BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028595
(207 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8
pdb|2NTY|D Chain D, Rop4-Gdp-Prone8
Length = 180
Score = 255 bits (652), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 115/140 (82%), Positives = 129/140 (92%)
Query: 33 DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
DY+PTVFDNFSANVV +G TVNLGLWDTAGQEDYNRLRPLSYRGADVF+LAFSL+S+ASY
Sbjct: 34 DYVPTVFDNFSANVVVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASY 93
Query: 93 ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGAS 152
ENV KKWIPEL+HY+PGVP++LVGTKLDLR+DK + DHPG VP+TT QGEEL+K IG+
Sbjct: 94 ENVAKKWIPELRHYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTNQGEELKKLIGSP 153
Query: 153 YYIECSSKTQQNVKAVFDAA 172
YIECSSKTQQNVKAVFDAA
Sbjct: 154 IYIECSSKTQQNVKAVFDAA 173
>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex
pdb|2WBL|D Chain D, Three-Dimensional Structure Of A Binary Rop-Prone Complex
Length = 180
Score = 254 bits (650), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 115/151 (76%), Positives = 135/151 (89%)
Query: 22 VLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 81
++S +G + DY+PTVFDNFSANVV +G+TVNLGLWDTAGQEDYNRLRPLSYRGADVF+
Sbjct: 23 LISYTGNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFL 82
Query: 82 LAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQ 141
LAFSL+S+ASYEN+ KKW+PEL+HY+PG+P+VLVGTKLDLR+DK +L DHPG +TTAQ
Sbjct: 83 LAFSLISKASYENIHKKWLPELKHYAPGIPIVLVGTKLDLRDDKQFLKDHPGAASITTAQ 142
Query: 142 GEELRKQIGASYYIECSSKTQQNVKAVFDAA 172
GEELRK IGA Y+ECSSKTQQNVKAVFD A
Sbjct: 143 GEELRKMIGAVRYLECSSKTQQNVKAVFDTA 173
>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5
Length = 182
Score = 252 bits (643), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 114/140 (81%), Positives = 127/140 (90%)
Query: 33 DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
DY+PTVFDNFSANVV G TVNLGLWDTAGQEDYNRLRPLSYRGADVF+LAFSL+S+ASY
Sbjct: 36 DYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASY 95
Query: 93 ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGAS 152
ENV KKWIPEL+HY+PGVP+VLVGTKLDLR+DK + DHPG VP+TT QGEEL+K IGA
Sbjct: 96 ENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAP 155
Query: 153 YYIECSSKTQQNVKAVFDAA 172
YIECSSK+Q+NVK VFDAA
Sbjct: 156 AYIECSSKSQENVKGVFDAA 175
>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|B Chain B, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|C Chain C, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
pdb|2J0V|D Chain D, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9:
The First Ras Superfamily Gtpase From The Plant Kingdom
Length = 212
Score = 238 bits (607), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 111/140 (79%), Positives = 126/140 (90%), Gaps = 2/140 (1%)
Query: 33 DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
DYIPTVFDNFSANV +G VNLGLWDTAGQEDY+RLRPLSYRGAD+FVLAFSL+S+ASY
Sbjct: 37 DYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASY 96
Query: 93 ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGAS 152
ENVLKKW+PEL+ ++P VP+VLVGTKLDLR+DK YLADH + +T+ QGEELRKQIGA+
Sbjct: 97 ENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLADHTNV--ITSTQGEELRKQIGAA 154
Query: 153 YYIECSSKTQQNVKAVFDAA 172
YIECSSKTQQNVKAVFD A
Sbjct: 155 AYIECSSKTQQNVKAVFDTA 174
>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With
Arfaptin (P21)
pdb|1I4L|D Chain D, Crystal Structure Analysis Of Rac1-Gdp In Complex With
Arfaptin (P41)
Length = 192
Score = 181 bits (459), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 85/142 (59%), Positives = 107/142 (75%), Gaps = 2/142 (1%)
Query: 33 DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
+YIPTVFDN+SANV+ +G VNLGLWDTAGQEDY+RLRPLSY DVF++ FSLVS AS+
Sbjct: 31 EYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASF 90
Query: 93 ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLVPVTTAQGEELRKQIG 150
ENV KW PE++H+ P P++LVGTKLDLR+DK + L P+T QG + K+IG
Sbjct: 91 ENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG 150
Query: 151 ASYYIECSSKTQQNVKAVFDAA 172
A Y+ECS+ TQ+ +K VFD A
Sbjct: 151 AVKYLECSALTQRGLKTVFDEA 172
>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1.
pdb|2YIN|D Chain D, Structure Of The Complex Between Dock2 And Rac1
Length = 196
Score = 181 bits (459), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 85/142 (59%), Positives = 107/142 (75%), Gaps = 2/142 (1%)
Query: 33 DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
+YIPTVFDN+SANV+ +G VNLGLWDTAGQEDY+RLRPLSY DVF++ FSLVS AS+
Sbjct: 50 EYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASF 109
Query: 93 ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLVPVTTAQGEELRKQIG 150
ENV KW PE++H+ P P++LVGTKLDLR+DK + L P+T QG + K+IG
Sbjct: 110 ENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG 169
Query: 151 ASYYIECSSKTQQNVKAVFDAA 172
A Y+ECS+ TQ+ +K VFD A
Sbjct: 170 AVKYLECSALTQRGLKTVFDEA 191
>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|B Chain B, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SUA|C Chain C, Crystal Structure Of The Intracellular Domain Of Plexin-B1
In Complex With Rac1
pdb|3SU8|A Chain A, Crystal Structure Of A Truncated Intracellular Domain Of
Plexin-B1 In Complex With Rac1
Length = 184
Score = 181 bits (458), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 85/142 (59%), Positives = 107/142 (75%), Gaps = 2/142 (1%)
Query: 33 DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
+YIPTVFDN+SANV+ +G VNLGLWDTAGQEDY+RLRPLSY DVF++ FSLVS AS+
Sbjct: 31 EYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASF 90
Query: 93 ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLVPVTTAQGEELRKQIG 150
ENV KW PE++H+ P P++LVGTKLDLR+DK + L P+T QG + K+IG
Sbjct: 91 ENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG 150
Query: 151 ASYYIECSSKTQQNVKAVFDAA 172
A Y+ECS+ TQ+ +K VFD A
Sbjct: 151 AVKYLECSALTQRGLKTVFDEA 172
>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta
2
Length = 178
Score = 181 bits (458), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 85/142 (59%), Positives = 107/142 (75%), Gaps = 2/142 (1%)
Query: 33 DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
+YIPTVFDN+SANV+ +G VNLGLWDTAGQEDY+RLRPLSY DVF++ FSLVS AS+
Sbjct: 31 EYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASF 90
Query: 93 ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLVPVTTAQGEELRKQIG 150
ENV KW PE++H+ P P++LVGTKLDLR+DK + L P+T QG + K+IG
Sbjct: 91 ENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG 150
Query: 151 ASYYIECSSKTQQNVKAVFDAA 172
A Y+ECS+ TQ+ +K VFD A
Sbjct: 151 AVKYLECSALTQRGLKTVFDEA 172
>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|D Chain D, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|F Chain F, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|1FOE|H Chain H, Crystal Structure Of Rac1 In Complex With The Guanine
Nucleotide Exchange Region Of Tiam1
pdb|2NZ8|A Chain A, N-Terminal Dhph Cassette Of Trio In Complex With
Nucleotide- Free Rac1
pdb|3BJI|C Chain C, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
pdb|3BJI|D Chain D, Structural Basis Of Promiscuous Guanine Nucleotide
Exchange By The T-Cell Essential Vav1
Length = 177
Score = 181 bits (458), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 85/142 (59%), Positives = 107/142 (75%), Gaps = 2/142 (1%)
Query: 33 DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
+YIPTVFDN+SANV+ +G VNLGLWDTAGQEDY+RLRPLSY DVF++ FSLVS AS+
Sbjct: 31 EYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASF 90
Query: 93 ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLVPVTTAQGEELRKQIG 150
ENV KW PE++H+ P P++LVGTKLDLR+DK + L P+T QG + K+IG
Sbjct: 91 ENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG 150
Query: 151 ASYYIECSSKTQQNVKAVFDAA 172
A Y+ECS+ TQ+ +K VFD A
Sbjct: 151 AVKYLECSALTQRGLKTVFDEA 172
>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The
Vav1 Exchange Factor
Length = 184
Score = 181 bits (458), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 85/142 (59%), Positives = 107/142 (75%), Gaps = 2/142 (1%)
Query: 33 DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
+YIPTVFDN+SANV+ +G VNLGLWDTAGQEDY+RLRPLSY DVF++ FSLVS AS+
Sbjct: 31 EYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASF 90
Query: 93 ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLVPVTTAQGEELRKQIG 150
ENV KW PE++H+ P P++LVGTKLDLR+DK + L P+T QG + K+IG
Sbjct: 91 ENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG 150
Query: 151 ASYYIECSSKTQQNVKAVFDAA 172
A Y+ECS+ TQ+ +K VFD A
Sbjct: 151 AVKYLECSALTQRGLKTVFDEA 172
>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
pdb|3B13|D Chain D, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex
With Rac1 (T17n Mutant)
Length = 184
Score = 181 bits (458), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 85/142 (59%), Positives = 107/142 (75%), Gaps = 2/142 (1%)
Query: 33 DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
+YIPTVFDN+SANV+ +G VNLGLWDTAGQEDY+RLRPLSY DVF++ FSLVS AS+
Sbjct: 38 EYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASF 97
Query: 93 ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLVPVTTAQGEELRKQIG 150
ENV KW PE++H+ P P++LVGTKLDLR+DK + L P+T QG + K+IG
Sbjct: 98 ENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG 157
Query: 151 ASYYIECSSKTQQNVKAVFDAA 172
A Y+ECS+ TQ+ +K VFD A
Sbjct: 158 AVKYLECSALTQRGLKTVFDEA 179
>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
pdb|1HE1|D Chain D, Crystal Structure Of The Complex Between The Gap Domain Of
The Pseudomonas Aeruginosa Exos Toxin And Human Rac
Length = 176
Score = 180 bits (457), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 85/142 (59%), Positives = 107/142 (75%), Gaps = 2/142 (1%)
Query: 33 DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
+YIPTVFDN+SANV+ +G VNLGLWDTAGQEDY+RLRPLSY DVF++ FSLVS AS+
Sbjct: 31 EYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASF 90
Query: 93 ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLVPVTTAQGEELRKQIG 150
ENV KW PE++H+ P P++LVGTKLDLR+DK + L P+T QG + K+IG
Sbjct: 91 ENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG 150
Query: 151 ASYYIECSSKTQQNVKAVFDAA 172
A Y+ECS+ TQ+ +K VFD A
Sbjct: 151 AVKYLECSALTQRGLKTVFDEA 172
>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBD|B Chain B, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBE|A Chain A, Crystal Structure Of Rac1 P29s Mutant
Length = 187
Score = 180 bits (457), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 85/142 (59%), Positives = 107/142 (75%), Gaps = 2/142 (1%)
Query: 33 DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
+YIPTVFDN+SANV+ +G VNLGLWDTAGQEDY+RLRPLSY DVF++ FSLVS AS+
Sbjct: 41 EYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASF 100
Query: 93 ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLVPVTTAQGEELRKQIG 150
ENV KW PE++H+ P P++LVGTKLDLR+DK + L P+T QG + K+IG
Sbjct: 101 ENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG 160
Query: 151 ASYYIECSSKTQQNVKAVFDAA 172
A Y+ECS+ TQ+ +K VFD A
Sbjct: 161 AVKYLECSALTQRGLKTVFDEA 182
>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant
pdb|4GZM|B Chain B, Crystal Structure Of Rac1 F28l Mutant
Length = 204
Score = 180 bits (457), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 85/142 (59%), Positives = 107/142 (75%), Gaps = 2/142 (1%)
Query: 33 DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
+YIPTVFDN+SANV+ +G VNLGLWDTAGQEDY+RLRPLSY DVF++ FSLVS AS+
Sbjct: 58 EYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASF 117
Query: 93 ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLVPVTTAQGEELRKQIG 150
ENV KW PE++H+ P P++LVGTKLDLR+DK + L P+T QG + K+IG
Sbjct: 118 ENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG 177
Query: 151 ASYYIECSSKTQQNVKAVFDAA 172
A Y+ECS+ TQ+ +K VFD A
Sbjct: 178 AVKYLECSALTQRGLKTVFDEA 199
>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1
pdb|3TH5|B Chain B, Crystal Structure Of Wild-Type Rac1
Length = 204
Score = 180 bits (456), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 85/142 (59%), Positives = 107/142 (75%), Gaps = 2/142 (1%)
Query: 33 DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
+YIPTVFDN+SANV+ +G VNLGLWDTAGQEDY+RLRPLSY DVF++ FSLVS AS+
Sbjct: 58 EYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASF 117
Query: 93 ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLVPVTTAQGEELRKQIG 150
ENV KW PE++H+ P P++LVGTKLDLR+DK + L P+T QG + K+IG
Sbjct: 118 ENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG 177
Query: 151 ASYYIECSSKTQQNVKAVFDAA 172
A Y+ECS+ TQ+ +K VFD A
Sbjct: 178 AVKYLECSALTQRGLKTVFDEA 199
>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With
Arfaptin
pdb|2RMK|A Chain A, Rac1PRK1 COMPLEX
Length = 192
Score = 178 bits (451), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 84/142 (59%), Positives = 106/142 (74%), Gaps = 2/142 (1%)
Query: 33 DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
+YIPTVFDN+SANV+ +G VNLGLWDTAG EDY+RLRPLSY DVF++ FSLVS AS+
Sbjct: 31 EYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASF 90
Query: 93 ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLVPVTTAQGEELRKQIG 150
ENV KW PE++H+ P P++LVGTKLDLR+DK + L P+T QG + K+IG
Sbjct: 91 ENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG 150
Query: 151 ASYYIECSSKTQQNVKAVFDAA 172
A Y+ECS+ TQ+ +K VFD A
Sbjct: 151 AVKYLECSALTQRGLKTVFDEA 172
>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX
Length = 192
Score = 178 bits (451), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 84/142 (59%), Positives = 106/142 (74%), Gaps = 2/142 (1%)
Query: 33 DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
+YIPTVFDN+SANV+ +G VNLGLWDTAG EDY+RLRPLSY DVF++ FSLVS AS+
Sbjct: 31 EYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASF 90
Query: 93 ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLVPVTTAQGEELRKQIG 150
ENV KW PE++H+ P P++LVGTKLDLR+DK + L P+T QG + K+IG
Sbjct: 91 ENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG 150
Query: 151 ASYYIECSSKTQQNVKAVFDAA 172
A Y+ECS+ TQ+ +K VFD A
Sbjct: 151 AVKYLECSALTQRGLKTVFDEA 172
>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
pdb|1HH4|B Chain B, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation
Length = 192
Score = 178 bits (451), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 84/142 (59%), Positives = 106/142 (74%), Gaps = 2/142 (1%)
Query: 33 DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
+YIPTVFDN+SANV+ +G VNLGLWDTAGQEDY+RLRPLSY DV ++ FSLVS AS+
Sbjct: 31 EYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASF 90
Query: 93 ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLVPVTTAQGEELRKQIG 150
ENV KW PE++H+ P P++LVGTKLDLR+DK + L P+T QG + K+IG
Sbjct: 91 ENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG 150
Query: 151 ASYYIECSSKTQQNVKAVFDAA 172
A Y+ECS+ TQ+ +K VFD A
Sbjct: 151 AVKYLECSALTQRGLKTVFDEA 172
>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex
Length = 192
Score = 177 bits (450), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 84/142 (59%), Positives = 105/142 (73%), Gaps = 2/142 (1%)
Query: 33 DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
+YIPTVFDN+SANV+ + VNLGLWDTAGQEDY+RLRPLSY DVF++ FSLVS ASY
Sbjct: 31 EYIPTVFDNYSANVMVDSKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASY 90
Query: 93 ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLVPVTTAQGEELRKQIG 150
ENV KW PE++H+ P P++LVGTKLDLR+DK + L P+T QG L K+I
Sbjct: 91 ENVRAKWFPEVRHHCPSTPIILVGTKLDLRDDKDTIEKLKEKKLAPITYPQGLALAKEID 150
Query: 151 ASYYIECSSKTQQNVKAVFDAA 172
+ Y+ECS+ TQ+ +K VFD A
Sbjct: 151 SVKYLECSALTQRGLKTVFDEA 172
>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1
pdb|2H7V|B Chain B, Co-crystal Structure Of Ypka-rac1
pdb|2P2L|A Chain A, Rac1-gdp-zinc Complex
pdb|2P2L|B Chain B, Rac1-gdp-zinc Complex
pdb|2P2L|C Chain C, Rac1-gdp-zinc Complex
Length = 188
Score = 177 bits (450), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 84/142 (59%), Positives = 106/142 (74%), Gaps = 2/142 (1%)
Query: 33 DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
+YIPTVFDN+SANV+ +G VNLGLWDTAGQEDY+RLRPLSY DV ++ FSLVS AS+
Sbjct: 35 EYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASF 94
Query: 93 ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLVPVTTAQGEELRKQIG 150
ENV KW PE++H+ P P++LVGTKLDLR+DK + L P+T QG + K+IG
Sbjct: 95 ENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG 154
Query: 151 ASYYIECSSKTQQNVKAVFDAA 172
A Y+ECS+ TQ+ +K VFD A
Sbjct: 155 AVKYLECSALTQRGLKTVFDEA 176
>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase
And Gtpase Activating Protein Sptp Bound To Rac1
Length = 184
Score = 177 bits (450), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 84/142 (59%), Positives = 106/142 (74%), Gaps = 2/142 (1%)
Query: 33 DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
+YIPTVFDN+SANV+ +G VNLGLWDTAGQEDY+RLRPLSY DV ++ FSLVS AS+
Sbjct: 31 EYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASF 90
Query: 93 ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLVPVTTAQGEELRKQIG 150
ENV KW PE++H+ P P++LVGTKLDLR+DK + L P+T QG + K+IG
Sbjct: 91 ENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG 150
Query: 151 ASYYIECSSKTQQNVKAVFDAA 172
A Y+ECS+ TQ+ +K VFD A
Sbjct: 151 AVKYLECSALTQRGLKTVFDEA 172
>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1
Length = 180
Score = 177 bits (449), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 84/142 (59%), Positives = 106/142 (74%), Gaps = 2/142 (1%)
Query: 33 DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
+YIPTVFDN+SANV+ +G VNLGLWDTAG EDY+RLRPLSY DVF++ FSLVS AS+
Sbjct: 34 EYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASF 93
Query: 93 ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLVPVTTAQGEELRKQIG 150
ENV KW PE++H+ P P++LVGTKLDLR+DK + L P+T QG + K+IG
Sbjct: 94 ENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG 153
Query: 151 ASYYIECSSKTQQNVKAVFDAA 172
A Y+ECS+ TQ+ +K VFD A
Sbjct: 154 AVKYLECSALTQRGLKTVFDEA 175
>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant
pdb|4GZL|B Chain B, Crystal Structure Of Rac1 Q61l Mutant
Length = 204
Score = 177 bits (449), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 84/142 (59%), Positives = 106/142 (74%), Gaps = 2/142 (1%)
Query: 33 DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
+YIPTVFDN+SANV+ +G VNLGLWDTAG EDY+RLRPLSY DVF++ FSLVS AS+
Sbjct: 58 EYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASF 117
Query: 93 ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLVPVTTAQGEELRKQIG 150
ENV KW PE++H+ P P++LVGTKLDLR+DK + L P+T QG + K+IG
Sbjct: 118 ENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG 177
Query: 151 ASYYIECSSKTQQNVKAVFDAA 172
A Y+ECS+ TQ+ +K VFD A
Sbjct: 178 AVKYLECSALTQRGLKTVFDEA 199
>pdb|1MH1|A Chain A, Small G-Protein
Length = 186
Score = 177 bits (449), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 84/142 (59%), Positives = 106/142 (74%), Gaps = 2/142 (1%)
Query: 33 DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
+YIPTVFDN+SANV+ +G VNLGLWDTAGQEDY+RLRPLSY DV ++ FSLVS AS+
Sbjct: 33 EYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASF 92
Query: 93 ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLVPVTTAQGEELRKQIG 150
ENV KW PE++H+ P P++LVGTKLDLR+DK + L P+T QG + K+IG
Sbjct: 93 ENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG 152
Query: 151 ASYYIECSSKTQQNVKAVFDAA 172
A Y+ECS+ TQ+ +K VFD A
Sbjct: 153 AVKYLECSALTQRGLKTVFDEA 174
>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|B Chain B, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|C Chain C, Rac2 (G12v) In Complex With Gtpgs
pdb|2W2V|D Chain D, Rac2 (G12v) In Complex With Gtpgs
Length = 184
Score = 176 bits (447), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 84/142 (59%), Positives = 105/142 (73%), Gaps = 2/142 (1%)
Query: 33 DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
+YIPTVFDN+SANV+ + VNLGLWDTAGQEDY+RLRPLSY DVF++ FSLVS ASY
Sbjct: 38 EYIPTVFDNYSANVMVDSKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASY 97
Query: 93 ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLVPVTTAQGEELRKQIG 150
ENV KW PE++H+ P P++LVGTKLDLR+DK + L P+T QG L K+I
Sbjct: 98 ENVRAKWFPEVRHHCPSTPIILVGTKLDLRDDKDTIEKLKEKKLAPITYPQGLALAKEID 157
Query: 151 ASYYIECSSKTQQNVKAVFDAA 172
+ Y+ECS+ TQ+ +K VFD A
Sbjct: 158 SVKYLECSALTQRGLKTVFDEA 179
>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp
pdb|2W2X|A Chain A, Complex Of Rac2 And Plcg2 Spph Domain
pdb|2W2X|B Chain B, Complex Of Rac2 And Plcg2 Spph Domain
Length = 185
Score = 176 bits (447), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 84/142 (59%), Positives = 105/142 (73%), Gaps = 2/142 (1%)
Query: 33 DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
+YIPTVFDN+SANV+ + VNLGLWDTAGQEDY+RLRPLSY DVF++ FSLVS ASY
Sbjct: 37 EYIPTVFDNYSANVMVDSKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASY 96
Query: 93 ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLVPVTTAQGEELRKQIG 150
ENV KW PE++H+ P P++LVGTKLDLR+DK + L P+T QG L K+I
Sbjct: 97 ENVRAKWFPEVRHHCPSTPIILVGTKLDLRDDKDTIEKLKEKKLAPITYPQGLALAKEID 156
Query: 151 ASYYIECSSKTQQNVKAVFDAA 172
+ Y+ECS+ TQ+ +K VFD A
Sbjct: 157 SVKYLECSALTQRGLKTVFDEA 178
>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp
pdb|2C2H|B Chain B, Crystal Structure Of The Human Rac3 In Complex With Gdp
Length = 192
Score = 176 bits (447), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 83/142 (58%), Positives = 107/142 (75%), Gaps = 2/142 (1%)
Query: 33 DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
+YIPTVFDN+SANV+ +G VNLGLWDTAGQEDY+RLRPLSY DVF++ FSLVS AS+
Sbjct: 31 EYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASF 90
Query: 93 ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLVPVTTAQGEELRKQIG 150
ENV KW PE++H+ P P++LVGTKLDLR+DK + L P+T QG + ++IG
Sbjct: 91 ENVRAKWYPEVRHHCPHTPILLVGTKLDLRDDKDTIERLRDKKLAPITYPQGLAMAREIG 150
Query: 151 ASYYIECSSKTQQNVKAVFDAA 172
+ Y+ECS+ TQ+ +K VFD A
Sbjct: 151 SVKYLECSALTQRGLKTVFDEA 172
>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2G0N|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
Gdp And Chloride
pdb|2OV2|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|F Chain F, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|B Chain B, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|C Chain C, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|G Chain G, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|D Chain D, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|E Chain E, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2OV2|H Chain H, The Crystal Structure Of The Human Rac3 In Complex With
The Crib Domain Of Human P21-Activated Kinase 4 (Pak4)
pdb|2QME|A Chain A, Crystal Structure Of Human Rac3 In Complex With Crib
Domain Of Human P21-Activated Kinase 1 (Pak1)
Length = 179
Score = 176 bits (446), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 83/142 (58%), Positives = 107/142 (75%), Gaps = 2/142 (1%)
Query: 33 DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
+YIPTVFDN+SANV+ +G VNLGLWDTAGQEDY+RLRPLSY DVF++ FSLVS AS+
Sbjct: 32 EYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASF 91
Query: 93 ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLVPVTTAQGEELRKQIG 150
ENV KW PE++H+ P P++LVGTKLDLR+DK + L P+T QG + ++IG
Sbjct: 92 ENVRAKWYPEVRHHCPHTPILLVGTKLDLRDDKDTIERLRDKKLAPITYPQGLAMAREIG 151
Query: 151 ASYYIECSSKTQQNVKAVFDAA 172
+ Y+ECS+ TQ+ +K VFD A
Sbjct: 152 SVKYLECSALTQRGLKTVFDEA 173
>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p.
pdb|2IC5|B Chain B, Crystal Structure Of Human Rac3 Grown In The Presence Of
Gpp(Nh)p
Length = 180
Score = 176 bits (445), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 83/142 (58%), Positives = 107/142 (75%), Gaps = 2/142 (1%)
Query: 33 DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
+YIPTVFDN+SANV+ +G VNLGLWDTAGQEDY+RLRPLSY DVF++ FSLVS AS+
Sbjct: 32 EYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASF 91
Query: 93 ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLVPVTTAQGEELRKQIG 150
ENV KW PE++H+ P P++LVGTKLDLR+DK + L P+T QG + ++IG
Sbjct: 92 ENVRAKWYPEVRHHCPHTPILLVGTKLDLRDDKDTIERLRDKKLAPITYPQGLAMAREIG 151
Query: 151 ASYYIECSSKTQQNVKAVFDAA 172
+ Y+ECS+ TQ+ +K VFD A
Sbjct: 152 SVKYLECSALTQRGLKTVFDEA 173
>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2
Wildtype
Length = 332
Score = 174 bits (440), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 82/142 (57%), Positives = 105/142 (73%), Gaps = 2/142 (1%)
Query: 33 DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
+YIPTVFDN+SANV+ +G VNLGLWDTAG EDY+RLRPLSY DVF++ FSLVS AS+
Sbjct: 183 EYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASF 242
Query: 93 ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLVPVTTAQGEELRKQIG 150
+V KW PE++H+ P P++LVGTKLDLR+DK + L P+T QG + K+IG
Sbjct: 243 HHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG 302
Query: 151 ASYYIECSSKTQQNVKAVFDAA 172
A Y+ECS+ TQ+ +K VFD A
Sbjct: 303 AVKYLECSALTQRGLKTVFDEA 324
>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450m Mutant
Length = 332
Score = 174 bits (440), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 82/142 (57%), Positives = 105/142 (73%), Gaps = 2/142 (1%)
Query: 33 DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
+YIPTVFDN+SANV+ +G VNLGLWDTAG EDY+RLRPLSY DVF++ FSLVS AS+
Sbjct: 183 EYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASF 242
Query: 93 ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLVPVTTAQGEELRKQIG 150
+V KW PE++H+ P P++LVGTKLDLR+DK + L P+T QG + K+IG
Sbjct: 243 HHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG 302
Query: 151 ASYYIECSSKTQQNVKAVFDAA 172
A Y+ECS+ TQ+ +K VFD A
Sbjct: 303 AVKYLECSALTQRGLKTVFDEA 324
>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2
C450a Mutant
Length = 332
Score = 173 bits (439), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 82/142 (57%), Positives = 105/142 (73%), Gaps = 2/142 (1%)
Query: 33 DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
+YIPTVFDN+SANV+ +G VNLGLWDTAG EDY+RLRPLSY DVF++ FSLVS AS+
Sbjct: 183 EYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASF 242
Query: 93 ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLVPVTTAQGEELRKQIG 150
+V KW PE++H+ P P++LVGTKLDLR+DK + L P+T QG + K+IG
Sbjct: 243 HHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIG 302
Query: 151 ASYYIECSSKTQQNVKAVFDAA 172
A Y+ECS+ TQ+ +K VFD A
Sbjct: 303 AVKYLECSALTQRGLKTVFDEA 324
>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYF|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
pdb|1RYH|B Chain B, Alternative Splicing Of Rac1 Generates Rac1b, A
Self-Activating Gtpase
Length = 203
Score = 172 bits (436), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 88/161 (54%), Positives = 110/161 (68%), Gaps = 21/161 (13%)
Query: 33 DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSY--------------RG-- 76
+YIPTVFDN+SANV+ +G VNLGLWDTAGQEDY+RLRPLSY RG
Sbjct: 33 EYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTVGETYGKDITSRGKD 92
Query: 77 ---ADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DH 131
ADVF++ FSLVS AS+ENV KW PE++H+ P P++LVGTKLDLR+DK +
Sbjct: 93 KPIADVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKE 152
Query: 132 PGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 172
L P+T QG + K+IGA Y+ECS+ TQ+ +K VFD A
Sbjct: 153 KKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEA 193
>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex
pdb|2ATX|B Chain B, Crystal Structure Of The Tc10 Gppnhp Complex
Length = 194
Score = 156 bits (395), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 72/142 (50%), Positives = 105/142 (73%), Gaps = 2/142 (1%)
Query: 33 DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
+Y+PTVFD+++ +V G LGL+DTAGQEDY+RLRPLSY DVF++ FS+V+ AS+
Sbjct: 46 EYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASF 105
Query: 93 ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGL--VPVTTAQGEELRKQIG 150
+NV ++W+PEL+ Y+P VP +L+GT++DLR+D LA + P+ QG++L K+IG
Sbjct: 106 QNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIG 165
Query: 151 ASYYIECSSKTQQNVKAVFDAA 172
A Y+ECS+ TQ+ +K VFD A
Sbjct: 166 ACCYVECSALTQKGLKTVFDEA 187
>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap
pdb|1FTN|A Chain A, Crystal Structure Of The Human RhoaGDP COMPLEX
Length = 193
Score = 151 bits (381), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 68/141 (48%), Positives = 97/141 (68%), Gaps = 2/141 (1%)
Query: 34 YIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYE 93
Y+PTVF+N+ A++ +G V L LWDTAGQEDY+RLRPLSY DV ++ FS+ S S E
Sbjct: 34 YVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLE 93
Query: 94 NVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLV--PVTTAQGEELRKQIGA 151
N+ +KW PE++H+ P VP++LVG K DLR D+H + + PV +G ++ +IGA
Sbjct: 94 NIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGA 153
Query: 152 SYYIECSSKTQQNVKAVFDAA 172
Y+ECS+KT+ V+ VF+ A
Sbjct: 154 FGYMECSAKTKDGVREVFEMA 174
>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex
pdb|3TVD|B Chain B, Crystal Structure Of Mouse Rhoa-Gtp Complex
Length = 193
Score = 151 bits (381), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 68/141 (48%), Positives = 97/141 (68%), Gaps = 2/141 (1%)
Query: 34 YIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYE 93
Y+PTVF+N+ A++ +G V L LWDTAGQEDY+RLRPLSY DV ++ FS+ S S E
Sbjct: 34 YVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLE 93
Query: 94 NVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLV--PVTTAQGEELRKQIGA 151
N+ +KW PE++H+ P VP++LVG K DLR D+H + + PV +G ++ +IGA
Sbjct: 94 NIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGA 153
Query: 152 SYYIECSSKTQQNVKAVFDAA 172
Y+ECS+KT+ V+ VF+ A
Sbjct: 154 FGYMECSAKTKDGVREVFEMA 174
>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
pdb|1CC0|C Chain C, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex
Length = 190
Score = 150 bits (380), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 68/141 (48%), Positives = 97/141 (68%), Gaps = 2/141 (1%)
Query: 34 YIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYE 93
Y+PTVF+N+ A++ +G V L LWDTAGQEDY+RLRPLSY DV ++ FS+ S S E
Sbjct: 34 YVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLE 93
Query: 94 NVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLV--PVTTAQGEELRKQIGA 151
N+ +KW PE++H+ P VP++LVG K DLR D+H + + PV +G ++ +IGA
Sbjct: 94 NIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGA 153
Query: 152 SYYIECSSKTQQNVKAVFDAA 172
Y+ECS+KT+ V+ VF+ A
Sbjct: 154 FGYMECSAKTKDGVREVFEMA 174
>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The
Effector Domain Of The Protein Kinase PknPRK1
pdb|1A2B|A Chain A, Human Rhoa Complexed With Gtp Analogue
Length = 182
Score = 150 bits (380), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 68/141 (48%), Positives = 97/141 (68%), Gaps = 2/141 (1%)
Query: 34 YIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYE 93
Y+PTVF+N+ A++ +G V L LWDTAGQEDY+RLRPLSY DV ++ FS+ S S E
Sbjct: 35 YVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLE 94
Query: 94 NVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLV--PVTTAQGEELRKQIGA 151
N+ +KW PE++H+ P VP++LVG K DLR D+H + + PV +G ++ +IGA
Sbjct: 95 NIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGA 154
Query: 152 SYYIECSSKTQQNVKAVFDAA 172
Y+ECS+KT+ V+ VF+ A
Sbjct: 155 FGYMECSAKTKDGVREVFEMA 175
>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With
Gdp
Length = 180
Score = 150 bits (380), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 68/141 (48%), Positives = 97/141 (68%), Gaps = 2/141 (1%)
Query: 34 YIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYE 93
Y+PTVF+N+ A++ +G V L LWDTAGQEDY+R RPLSY DV ++ FS+ S S E
Sbjct: 34 YVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRARPLSYPDTDVILMCFSIDSPDSLE 93
Query: 94 NVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLV--PVTTAQGEELRKQIGA 151
N+ +KW PE++H+ P VP++LVG K DLR D+H + + PV A+G ++ +IGA
Sbjct: 94 NIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTARELAKMKQEPVKPAEGRDMANRIGA 153
Query: 152 SYYIECSSKTQQNVKAVFDAA 172
Y+ECS+KT+ V+ VF+ A
Sbjct: 154 FGYMECSAKTKDGVREVFEMA 174
>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap
Domain Of Arhgap20
Length = 180
Score = 150 bits (380), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 68/141 (48%), Positives = 97/141 (68%), Gaps = 2/141 (1%)
Query: 34 YIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYE 93
Y+PTVF+N+ A++ +G V L LWDTAGQEDY+RLRPLSY DV ++ FS+ S S E
Sbjct: 34 YVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLE 93
Query: 94 NVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLV--PVTTAQGEELRKQIGA 151
N+ +KW PE++H+ P VP++LVG K DLR D+H + + PV +G ++ +IGA
Sbjct: 94 NIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGA 153
Query: 152 SYYIECSSKTQQNVKAVFDAA 172
Y+ECS+KT+ V+ VF+ A
Sbjct: 154 FGYMECSAKTKDGVREVFEMA 174
>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX
Length = 177
Score = 150 bits (380), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 68/141 (48%), Positives = 97/141 (68%), Gaps = 2/141 (1%)
Query: 34 YIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYE 93
Y+PTVF+N+ A++ +G V L LWDTAGQEDY+RLRPLSY DV ++ FS+ S S E
Sbjct: 32 YVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLE 91
Query: 94 NVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLV--PVTTAQGEELRKQIGA 151
N+ +KW PE++H+ P VP++LVG K DLR D+H + + PV +G ++ +IGA
Sbjct: 92 NIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGA 151
Query: 152 SYYIECSSKTQQNVKAVFDAA 172
Y+ECS+KT+ V+ VF+ A
Sbjct: 152 FGYMECSAKTKDGVREVFEMA 172
>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|D Chain D, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|F Chain F, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|1X86|H Chain H, Crystal Structure Of The DhPH DOMAINS OF
LEUKEMIA-Associated Rhogef In Complex With Rhoa
pdb|2RGN|C Chain C, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
pdb|2RGN|F Chain F, Crystal Structure Of P63rhogef Complex With Galpha-Q And
Rhoa
Length = 196
Score = 150 bits (380), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 68/141 (48%), Positives = 97/141 (68%), Gaps = 2/141 (1%)
Query: 34 YIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYE 93
Y+PTVF+N+ A++ +G V L LWDTAGQEDY+RLRPLSY DV ++ FS+ S S E
Sbjct: 37 YVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLE 96
Query: 94 NVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLV--PVTTAQGEELRKQIGA 151
N+ +KW PE++H+ P VP++LVG K DLR D+H + + PV +G ++ +IGA
Sbjct: 97 NIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGA 156
Query: 152 SYYIECSSKTQQNVKAVFDAA 172
Y+ECS+KT+ V+ VF+ A
Sbjct: 157 FGYMECSAKTKDGVREVFEMA 177
>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex
With Rhogdi In Its Active Gppnhp-Bound Form
Length = 195
Score = 150 bits (380), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 68/141 (48%), Positives = 97/141 (68%), Gaps = 2/141 (1%)
Query: 34 YIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYE 93
Y+PTVF+N+ A++ +G V L LWDTAGQEDY+RLRPLSY DV ++ FS+ S S E
Sbjct: 36 YVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLE 95
Query: 94 NVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLV--PVTTAQGEELRKQIGA 151
N+ +KW PE++H+ P VP++LVG K DLR D+H + + PV +G ++ +IGA
Sbjct: 96 NIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGA 155
Query: 152 SYYIECSSKTQQNVKAVFDAA 172
Y+ECS+KT+ V+ VF+ A
Sbjct: 156 FGYMECSAKTKDGVREVFEMA 176
>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
pdb|1Z2C|C Chain C, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc-
Gmppnp
Length = 193
Score = 150 bits (380), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 67/141 (47%), Positives = 99/141 (70%), Gaps = 2/141 (1%)
Query: 34 YIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYE 93
Y+PTVF+N+ A++ +G V L LWDTAGQEDY+RLRPLSY DV ++ FS+ S S E
Sbjct: 34 YVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLE 93
Query: 94 NVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLV--PVTTAQGEELRKQIGA 151
N+ +KW PE++H+ P VP++LVG K DLR+D+H + + PV + +G ++ +I A
Sbjct: 94 NIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISA 153
Query: 152 SYYIECSSKTQQNVKAVFDAA 172
Y+ECS+KT++ V+ VF+ A
Sbjct: 154 FGYLECSAKTKEGVREVFEMA 174
>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|D Chain D, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|F Chain F, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
pdb|1LB1|H Chain H, Crystal Structure Of The Dbl And Pleckstrin Homology
Domains Of Dbs In Complex With Rhoa
Length = 192
Score = 150 bits (380), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 68/141 (48%), Positives = 97/141 (68%), Gaps = 2/141 (1%)
Query: 34 YIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYE 93
Y+PTVF+N+ A++ +G V L LWDTAGQEDY+RLRPLSY DV ++ FS+ S S E
Sbjct: 36 YVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLE 95
Query: 94 NVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLV--PVTTAQGEELRKQIGA 151
N+ +KW PE++H+ P VP++LVG K DLR D+H + + PV +G ++ +IGA
Sbjct: 96 NIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGA 155
Query: 152 SYYIECSSKTQQNVKAVFDAA 172
Y+ECS+KT+ V+ VF+ A
Sbjct: 156 FGYMECSAKTKDGVREVFEMA 176
>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
pdb|1S1C|B Chain B, Crystal Structure Of The Complex Between The Human Rhoa
And Rho-Binding Domain Of Human Rocki
Length = 183
Score = 150 bits (380), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 68/141 (48%), Positives = 97/141 (68%), Gaps = 2/141 (1%)
Query: 34 YIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYE 93
Y+PTVF+N+ A++ +G V L LWDTAGQEDY+RLRPLSY DV ++ FS+ S S E
Sbjct: 36 YVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLE 95
Query: 94 NVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLV--PVTTAQGEELRKQIGA 151
N+ +KW PE++H+ P VP++LVG K DLR D+H + + PV +G ++ +IGA
Sbjct: 96 NIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGA 155
Query: 152 SYYIECSSKTQQNVKAVFDAA 172
Y+ECS+KT+ V+ VF+ A
Sbjct: 156 FGYMECSAKTKDGVREVFEMA 176
>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
pdb|3KZ1|F Chain F, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH
DOMAINS WITH GTP- Gamma-S Activated Rhoa
Length = 182
Score = 150 bits (380), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 68/141 (48%), Positives = 97/141 (68%), Gaps = 2/141 (1%)
Query: 34 YIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYE 93
Y+PTVF+N+ A++ +G V L LWDTAGQEDY+RLRPLSY DV ++ FS+ S S E
Sbjct: 35 YVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLE 94
Query: 94 NVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLV--PVTTAQGEELRKQIGA 151
N+ +KW PE++H+ P VP++LVG K DLR D+H + + PV +G ++ +IGA
Sbjct: 95 NIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGA 154
Query: 152 SYYIECSSKTQQNVKAVFDAA 172
Y+ECS+KT+ V+ VF+ A
Sbjct: 155 FGYMECSAKTKDGVREVFEMA 175
>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|1XCG|F Chain F, Crystal Structure Of Human Rhoa In Complex With DhPH
Fragment Of Pdzrhogef
pdb|3T06|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
pdb|3T06|F Chain F, Crystal Structure Of The DhPH FRAGMENT OF PDZRHOGEF WITH
N-Terminal Regulatory Elements In Complex With Human
Rhoa
Length = 178
Score = 150 bits (380), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 68/141 (48%), Positives = 97/141 (68%), Gaps = 2/141 (1%)
Query: 34 YIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYE 93
Y+PTVF+N+ A++ +G V L LWDTAGQEDY+RLRPLSY DV ++ FS+ S S E
Sbjct: 32 YVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLE 91
Query: 94 NVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLV--PVTTAQGEELRKQIGA 151
N+ +KW PE++H+ P VP++LVG K DLR D+H + + PV +G ++ +IGA
Sbjct: 92 NIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGA 151
Query: 152 SYYIECSSKTQQNVKAVFDAA 172
Y+ECS+KT+ V+ VF+ A
Sbjct: 152 FGYMECSAKTKDGVREVFEMA 172
>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|C Chain C, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LW8|D Chain D, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex A)
pdb|3LWN|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LWN|B Chain B, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+
(Complex B)
pdb|3LXR|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa And Gdp (Complex
C)
Length = 185
Score = 150 bits (379), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 68/141 (48%), Positives = 97/141 (68%), Gaps = 2/141 (1%)
Query: 34 YIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYE 93
Y+PTVF+N+ A++ +G V L LWDTAGQEDY+RLRPLSY DV ++ FS+ S S E
Sbjct: 38 YVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLE 97
Query: 94 NVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLV--PVTTAQGEELRKQIGA 151
N+ +KW PE++H+ P VP++LVG K DLR D+H + + PV +G ++ +IGA
Sbjct: 98 NIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGA 157
Query: 152 SYYIECSSKTQQNVKAVFDAA 172
Y+ECS+KT+ V+ VF+ A
Sbjct: 158 FGYMECSAKTKDGVREVFEMA 178
>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex
pdb|2GCO|B Chain B, Crystal Structure Of The Human Rhoc-gppnhp Complex
pdb|2GCP|A Chain A, Crystal Structure Of The Human Rhoc-Gsp Complex
Length = 201
Score = 150 bits (379), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 67/141 (47%), Positives = 99/141 (70%), Gaps = 2/141 (1%)
Query: 34 YIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYE 93
Y+PTVF+N+ A++ +G V L LWDTAGQEDY+RLRPLSY DV ++ FS+ S S E
Sbjct: 54 YVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLE 113
Query: 94 NVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLV--PVTTAQGEELRKQIGA 151
N+ +KW PE++H+ P VP++LVG K DLR+D+H + + PV + +G ++ +I A
Sbjct: 114 NIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISA 173
Query: 152 SYYIECSSKTQQNVKAVFDAA 172
Y+ECS+KT++ V+ VF+ A
Sbjct: 174 FGYLECSAKTKEGVREVFEMA 194
>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex
Length = 201
Score = 150 bits (379), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 67/141 (47%), Positives = 99/141 (70%), Gaps = 2/141 (1%)
Query: 34 YIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYE 93
Y+PTVF+N+ A++ +G V L LWDTAGQEDY+RLRPLSY DV ++ FS+ S S E
Sbjct: 54 YVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLE 113
Query: 94 NVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLV--PVTTAQGEELRKQIGA 151
N+ +KW PE++H+ P VP++LVG K DLR+D+H + + PV + +G ++ +I A
Sbjct: 114 NIPEKWTPEVKHFXPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISA 173
Query: 152 SYYIECSSKTQQNVKAVFDAA 172
Y+ECS+KT++ V+ VF+ A
Sbjct: 174 FGYLECSAKTKEGVREVFEMA 194
>pdb|1A4R|B Chain B, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
pdb|1A4R|A Chain A, G12v Mutant Of Human Placental Cdc42 Gtpase In The Gdp
Form
Length = 191
Score = 149 bits (375), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 71/143 (49%), Positives = 100/143 (69%), Gaps = 4/143 (2%)
Query: 33 DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
+Y+PTVFDN++ V+ G LGL+DTAGQEDY+RLRPLSY DVF++ FS+VS +S+
Sbjct: 31 EYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSF 90
Query: 93 ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK---HYLADHPGLVPVTTAQGEELRKQI 149
ENV +KW+PE+ H+ P P +LVGT++DLR+D LA + P+T E+L + +
Sbjct: 91 ENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKN-KQKPITPETAEKLARDL 149
Query: 150 GASYYIECSSKTQQNVKAVFDAA 172
A Y+ECS+ TQ+ +K VFD A
Sbjct: 150 KAVKYVECSALTQKGLKNVFDEA 172
>pdb|2ODB|A Chain A, The Crystal Structure Of Human Cdc42 In Complex With The
Crib Domain Of Human P21-Activated Kinase 6 (Pak6)
Length = 192
Score = 149 bits (375), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 71/143 (49%), Positives = 100/143 (69%), Gaps = 4/143 (2%)
Query: 33 DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
+Y+PTVFDN++ V+ G LGL+DTAGQEDY+RLRPLSY DVF++ FS+VS +S+
Sbjct: 32 EYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSF 91
Query: 93 ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK---HYLADHPGLVPVTTAQGEELRKQI 149
ENV +KW+PE+ H+ P P +LVGT++DLR+D LA + P+T E+L + +
Sbjct: 92 ENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKN-KQKPITPETAEKLARDL 150
Query: 150 GASYYIECSSKTQQNVKAVFDAA 172
A Y+ECS+ TQ+ +K VFD A
Sbjct: 151 KAVKYVECSALTQKGLKNVFDEA 173
>pdb|1GRN|A Chain A, Crystal Structure Of The Cdc42CDC42GAPALF3 COMPLEX.
pdb|2NGR|A Chain A, Transition State Complex For Gtp Hydrolysis By Cdc42:
Comparisons Of The High Resolution Structures For Cdc42
Bound To The Active And Catalytically Compromised Forms
Of The Cdc42-gap.
pdb|4ITR|C Chain C, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
pdb|4ITR|D Chain D, Crystal Structure Of Ibpafic2-h3717a In Complex With
Adenylylated Cdc42
Length = 191
Score = 148 bits (374), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 71/143 (49%), Positives = 100/143 (69%), Gaps = 4/143 (2%)
Query: 33 DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
+Y+PTVFDN++ V+ G LGL+DTAGQEDY+RLRPLSY DVF++ FS+VS +S+
Sbjct: 31 EYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSF 90
Query: 93 ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK---HYLADHPGLVPVTTAQGEELRKQI 149
ENV +KW+PE+ H+ P P +LVGT++DLR+D LA + P+T E+L + +
Sbjct: 91 ENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKN-KQKPITPETAEKLARDL 149
Query: 150 GASYYIECSSKTQQNVKAVFDAA 172
A Y+ECS+ TQ+ +K VFD A
Sbjct: 150 KAVKYVECSALTQKGLKNVFDEA 172
>pdb|2QRZ|A Chain A, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
pdb|2QRZ|B Chain B, Cdc42 Bound To Gmp-Pcp: Induced Fit By Effector Is
Required
Length = 189
Score = 148 bits (374), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 71/143 (49%), Positives = 100/143 (69%), Gaps = 4/143 (2%)
Query: 33 DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
+Y+PTVFDN++ V+ G LGL+DTAGQEDY+RLRPLSY DVF++ FS+VS +S+
Sbjct: 31 EYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSF 90
Query: 93 ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK---HYLADHPGLVPVTTAQGEELRKQI 149
ENV +KW+PE+ H+ P P +LVGT++DLR+D LA + P+T E+L + +
Sbjct: 91 ENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKN-KQKPITPETAEKLARDL 149
Query: 150 GASYYIECSSKTQQNVKAVFDAA 172
A Y+ECS+ TQ+ +K VFD A
Sbjct: 150 KAVKYVECSALTQKGLKNVFDEA 172
>pdb|4DID|A Chain A, Crystal Structure Of Salmonella Effector N-Terminal Domain
Sopb In Complex With Cdc42
Length = 193
Score = 148 bits (374), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 71/143 (49%), Positives = 100/143 (69%), Gaps = 4/143 (2%)
Query: 33 DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
+Y+PTVFDN++ V+ G LGL+DTAGQEDY+RLRPLSY DVF++ FS+VS +S+
Sbjct: 41 EYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSF 100
Query: 93 ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK---HYLADHPGLVPVTTAQGEELRKQI 149
ENV +KW+PE+ H+ P P +LVGT++DLR+D LA + P+T E+L + +
Sbjct: 101 ENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKN-KQKPITPETAEKLARDL 159
Query: 150 GASYYIECSSKTQQNVKAVFDAA 172
A Y+ECS+ TQ+ +K VFD A
Sbjct: 160 KAVKYVECSALTQKGLKNVFDEA 182
>pdb|1KZ7|B Chain B, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZ7|D Chain D, Crystal Structure Of The DhPH FRAGMENT OF MURINE DBS IN
Complex With The Placental Isoform Of Human Cdc42
pdb|1KZG|B Chain B, Dbscdc42(Y889f)
pdb|1KZG|D Chain D, Dbscdc42(Y889f)
pdb|1KI1|A Chain A, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
pdb|1KI1|C Chain C, Guanine Nucleotide Exchange Region Of Intersectin In
Complex With Cdc42
Length = 188
Score = 148 bits (374), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 71/143 (49%), Positives = 100/143 (69%), Gaps = 4/143 (2%)
Query: 33 DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
+Y+PTVFDN++ V+ G LGL+DTAGQEDY+RLRPLSY DVF++ FS+VS +S+
Sbjct: 31 EYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSF 90
Query: 93 ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK---HYLADHPGLVPVTTAQGEELRKQI 149
ENV +KW+PE+ H+ P P +LVGT++DLR+D LA + P+T E+L + +
Sbjct: 91 ENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKN-KQKPITPETAEKLARDL 149
Query: 150 GASYYIECSSKTQQNVKAVFDAA 172
A Y+ECS+ TQ+ +K VFD A
Sbjct: 150 KAVKYVECSALTQKGLKNVFDEA 172
>pdb|1AJE|A Chain A, Cdc42 From Human, Nmr, 20 Structures
Length = 194
Score = 148 bits (374), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 71/143 (49%), Positives = 100/143 (69%), Gaps = 4/143 (2%)
Query: 33 DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
+Y+PTVFDN++ V+ G LGL+DTAGQEDY+RLRPLSY DVF++ FS+VS +S+
Sbjct: 38 EYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSF 97
Query: 93 ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK---HYLADHPGLVPVTTAQGEELRKQI 149
ENV +KW+PE+ H+ P P +LVGT++DLR+D LA + P+T E+L + +
Sbjct: 98 ENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKN-KQKPITPETAEKLARDL 156
Query: 150 GASYYIECSSKTQQNVKAVFDAA 172
A Y+ECS+ TQ+ +K VFD A
Sbjct: 157 KAVKYVECSALTQKGLKNVFDEA 179
>pdb|2WM9|B Chain B, Structure Of The Complex Between Dock9 And Cdc42.
pdb|2WMN|B Chain B, Structure Of The Complex Between Dock9 And Cdc42-Gdp.
pdb|2WMO|B Chain B, Structure Of The Complex Between Dock9 And Cdc42
Length = 190
Score = 148 bits (374), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 71/143 (49%), Positives = 100/143 (69%), Gaps = 4/143 (2%)
Query: 33 DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
+Y+PTVFDN++ V+ G LGL+DTAGQEDY+RLRPLSY DVF++ FS+VS +S+
Sbjct: 33 EYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSF 92
Query: 93 ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK---HYLADHPGLVPVTTAQGEELRKQI 149
ENV +KW+PE+ H+ P P +LVGT++DLR+D LA + P+T E+L + +
Sbjct: 93 ENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKN-KQKPITPETAEKLARDL 151
Query: 150 GASYYIECSSKTQQNVKAVFDAA 172
A Y+ECS+ TQ+ +K VFD A
Sbjct: 152 KAVKYVECSALTQKGLKNVFDEA 174
>pdb|2DFK|B Chain B, Crystal Structure Of The Cdc42-Collybistin Ii Complex
pdb|2DFK|D Chain D, Crystal Structure Of The Cdc42-Collybistin Ii Complex
Length = 194
Score = 148 bits (374), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 71/143 (49%), Positives = 100/143 (69%), Gaps = 4/143 (2%)
Query: 33 DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
+Y+PTVFDN++ V+ G LGL+DTAGQEDY+RLRPLSY DVF++ FS+VS +S+
Sbjct: 34 EYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSF 93
Query: 93 ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK---HYLADHPGLVPVTTAQGEELRKQI 149
ENV +KW+PE+ H+ P P +LVGT++DLR+D LA + P+T E+L + +
Sbjct: 94 ENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKN-KQKPITPETAEKLARDL 152
Query: 150 GASYYIECSSKTQQNVKAVFDAA 172
A Y+ECS+ TQ+ +K VFD A
Sbjct: 153 KAVKYVECSALTQKGLKNVFDEA 175
>pdb|2ASE|A Chain A, Nmr Structure Of The F28l Mutant Of Cdc42hs
Length = 178
Score = 148 bits (374), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 69/142 (48%), Positives = 98/142 (69%), Gaps = 2/142 (1%)
Query: 33 DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
+Y+PTVFDN++ V+ G LGL+DTAGQEDY+RLRPLSY DVF++ FS+VS +S+
Sbjct: 31 EYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSF 90
Query: 93 ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLAD--HPGLVPVTTAQGEELRKQIG 150
ENV +KW+PE+ H+ P P +LVGT++DLR+D + P+T E+L + +
Sbjct: 91 ENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLK 150
Query: 151 ASYYIECSSKTQQNVKAVFDAA 172
A Y+ECS+ TQ+ +K VFD A
Sbjct: 151 AVKYVECSALTQKGLKNVFDEA 172
>pdb|1CEE|A Chain A, Solution Structure Of Cdc42 In Complex With The Gtpase
Binding Domain Of Wasp
Length = 179
Score = 148 bits (374), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 69/142 (48%), Positives = 98/142 (69%), Gaps = 2/142 (1%)
Query: 33 DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
+Y+PTVFDN++ V+ G LGL+DTAGQEDY+RLRPLSY DVF++ FS+VS +S+
Sbjct: 31 EYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSF 90
Query: 93 ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLAD--HPGLVPVTTAQGEELRKQIG 150
ENV +KW+PE+ H+ P P +LVGT++DLR+D + P+T E+L + +
Sbjct: 91 ENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLK 150
Query: 151 ASYYIECSSKTQQNVKAVFDAA 172
A Y+ECS+ TQ+ +K VFD A
Sbjct: 151 AVKYVECSALTQKGLKNVFDEA 172
>pdb|1GZS|A Chain A, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
pdb|1GZS|C Chain C, Crystal Structure Of The Complex Between The Gef Domain Of
The Salmonella Typhimurium Sope Toxin And Human Cdc42
Length = 180
Score = 148 bits (374), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 69/142 (48%), Positives = 98/142 (69%), Gaps = 2/142 (1%)
Query: 33 DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
+Y+PTVFDN++ V+ G LGL+DTAGQEDY+RLRPLSY DVF++ FS+VS +S+
Sbjct: 33 EYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSF 92
Query: 93 ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLAD--HPGLVPVTTAQGEELRKQIG 150
ENV +KW+PE+ H+ P P +LVGT++DLR+D + P+T E+L + +
Sbjct: 93 ENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLK 152
Query: 151 ASYYIECSSKTQQNVKAVFDAA 172
A Y+ECS+ TQ+ +K VFD A
Sbjct: 153 AVKYVECSALTQKGLKNVFDEA 174
>pdb|1EES|A Chain A, Solution Structure Of Cdc42hs Complexed With A Peptide
Derived From P-21 Activated Kinase, Nmr, 20 Structures
Length = 178
Score = 148 bits (373), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 69/142 (48%), Positives = 98/142 (69%), Gaps = 2/142 (1%)
Query: 33 DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
+Y+PTVFDN++ V+ G LGL+DTAGQEDY+RLRPLSY DVF++ FS+VS +S+
Sbjct: 31 EYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSF 90
Query: 93 ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLAD--HPGLVPVTTAQGEELRKQIG 150
ENV +KW+PE+ H+ P P +LVGT++DLR+D + P+T E+L + +
Sbjct: 91 ENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLK 150
Query: 151 ASYYIECSSKTQQNVKAVFDAA 172
A Y+ECS+ TQ+ +K VFD A
Sbjct: 151 AVKYVECSALTQKGLKNVFDEA 172
>pdb|1DOA|A Chain A, Structure Of The Rho Family Gtp-Binding Protein Cdc42 In
Complex With The Multifunctional Regulator Rhogdi
Length = 191
Score = 148 bits (373), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 71/143 (49%), Positives = 100/143 (69%), Gaps = 4/143 (2%)
Query: 33 DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
+Y+PTVFDN++ V+ G LGL+DTAGQEDY+RLRPLSY DVF++ FS+VS +S+
Sbjct: 34 EYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSF 93
Query: 93 ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK---HYLADHPGLVPVTTAQGEELRKQI 149
ENV +KW+PE+ H+ P P +LVGT++DLR+D LA + P+T E+L + +
Sbjct: 94 ENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKN-KQKPITPETAEKLARDL 152
Query: 150 GASYYIECSSKTQQNVKAVFDAA 172
A Y+ECS+ TQ+ +K VFD A
Sbjct: 153 KAVKYVECSALTQKGLKNVFDEA 175
>pdb|3EG5|A Chain A, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
pdb|3EG5|C Chain C, Crystal Structure Of Mdia1-Tsh Gbd-Fh3 In Complex With
Cdc42-Gmppnp
Length = 178
Score = 148 bits (373), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 69/142 (48%), Positives = 98/142 (69%), Gaps = 2/142 (1%)
Query: 33 DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
+Y+PTVFDN++ V+ G LGL+DTAGQEDY+RLRPLSY DVF++ FS+VS +S+
Sbjct: 31 EYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSF 90
Query: 93 ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLAD--HPGLVPVTTAQGEELRKQIG 150
ENV +KW+PE+ H+ P P +LVGT++DLR+D + P+T E+L + +
Sbjct: 91 ENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLK 150
Query: 151 ASYYIECSSKTQQNVKAVFDAA 172
A Y+ECS+ TQ+ +K VFD A
Sbjct: 151 AVKYVECSALTQRGLKNVFDEA 172
>pdb|3VHL|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock8 In Complex
With Cdc42 (T17n Mutant)
Length = 195
Score = 148 bits (373), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 71/143 (49%), Positives = 100/143 (69%), Gaps = 4/143 (2%)
Query: 33 DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
+Y+PTVFDN++ V+ G LGL+DTAGQEDY+RLRPLSY DVF++ FS+VS +S+
Sbjct: 38 EYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSF 97
Query: 93 ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK---HYLADHPGLVPVTTAQGEELRKQI 149
ENV +KW+PE+ H+ P P +LVGT++DLR+D LA + P+T E+L + +
Sbjct: 98 ENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKN-KQKPITPETAEKLARDL 156
Query: 150 GASYYIECSSKTQQNVKAVFDAA 172
A Y+ECS+ TQ+ +K VFD A
Sbjct: 157 KAVKYVECSALTQKGLKNVFDEA 179
>pdb|1AM4|D Chain D, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|E Chain E, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
pdb|1AM4|F Chain F, Complex Between Cdc42hs.Gmppnp And P50 Rhogap (H. Sapiens)
Length = 177
Score = 148 bits (373), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 69/142 (48%), Positives = 98/142 (69%), Gaps = 2/142 (1%)
Query: 33 DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
+Y+PTVFDN++ V+ G LGL+DTAGQEDY+RLRPLSY DVF++ FS+VS +S+
Sbjct: 31 EYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSF 90
Query: 93 ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLAD--HPGLVPVTTAQGEELRKQIG 150
ENV +KW+PE+ H+ P P +LVGT++DLR+D + P+T E+L + +
Sbjct: 91 ENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLK 150
Query: 151 ASYYIECSSKTQQNVKAVFDAA 172
A Y+ECS+ TQ+ +K VFD A
Sbjct: 151 AVKYVECSALTQRGLKNVFDEA 172
>pdb|3GCG|A Chain A, Crystal Structure Of Map And Cdc42 Complex
Length = 182
Score = 148 bits (373), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 69/142 (48%), Positives = 98/142 (69%), Gaps = 2/142 (1%)
Query: 33 DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
+Y+PTVFDN++ V+ G LGL+DTAGQEDY+RLRPLSY DVF++ FS+VS +S+
Sbjct: 35 EYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSF 94
Query: 93 ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLAD--HPGLVPVTTAQGEELRKQIG 150
ENV +KW+PE+ H+ P P +LVGT++DLR+D + P+T E+L + +
Sbjct: 95 ENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLK 154
Query: 151 ASYYIECSSKTQQNVKAVFDAA 172
A Y+ECS+ TQ+ +K VFD A
Sbjct: 155 AVKYVECSALTQKGLKNVFDEA 176
>pdb|1AN0|A Chain A, Cdc42hs-Gdp Complex
pdb|1AN0|B Chain B, Cdc42hs-Gdp Complex
Length = 190
Score = 147 bits (372), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 71/143 (49%), Positives = 99/143 (69%), Gaps = 4/143 (2%)
Query: 33 DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
+Y+PTVFDN++ V G LGL+DTAGQEDY+RLRPLSY DVF++ FS+VS +S+
Sbjct: 31 EYVPTVFDNYAVTVXIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSF 90
Query: 93 ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK---HYLADHPGLVPVTTAQGEELRKQI 149
ENV +KW+PE+ H+ P P +LVGT++DLR+D LA + P+T E+L + +
Sbjct: 91 ENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKN-KQKPITPETAEKLARDL 149
Query: 150 GASYYIECSSKTQQNVKAVFDAA 172
A Y+ECS+ TQ+ +K VFD A
Sbjct: 150 KAVKYVECSALTQKGLKNVFDEA 172
>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa
Mutant (Q63l)
Length = 184
Score = 147 bits (371), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 67/141 (47%), Positives = 96/141 (68%), Gaps = 2/141 (1%)
Query: 34 YIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYE 93
Y+PTVF+N+ A++ +G V L LWDTAG EDY+RLRPLSY DV ++ FS+ S S E
Sbjct: 37 YVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLE 96
Query: 94 NVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLV--PVTTAQGEELRKQIGA 151
N+ +KW PE++H+ P VP++LVG K DLR D+H + + PV +G ++ +IGA
Sbjct: 97 NIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGA 156
Query: 152 SYYIECSSKTQQNVKAVFDAA 172
Y+ECS+KT+ V+ VF+ A
Sbjct: 157 FGYMECSAKTKDGVREVFEMA 177
>pdb|3QBV|A Chain A, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
pdb|3QBV|C Chain C, Structure Of Designed Orthogonal Interaction Between Cdc42
And Nucleotide Exchange Domains Of Intersectin
Length = 178
Score = 147 bits (370), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 69/142 (48%), Positives = 97/142 (68%), Gaps = 2/142 (1%)
Query: 33 DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
+Y+PTVFDN++ V+ G LGL DTAGQEDY+RLRPLSY DVF++ FS+VS +S+
Sbjct: 31 EYVPTVFDNYAVTVMIGGEPYTLGLRDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSF 90
Query: 93 ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLAD--HPGLVPVTTAQGEELRKQIG 150
ENV +KW+PE+ H+ P P +LVGT++DLR+D + P+T E+L + +
Sbjct: 91 ENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLK 150
Query: 151 ASYYIECSSKTQQNVKAVFDAA 172
A Y+ECS+ TQ+ +K VFD A
Sbjct: 151 AVKYVECSALTQKGLKNVFDEA 172
>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State
Length = 201
Score = 147 bits (370), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 71/142 (50%), Positives = 99/142 (69%), Gaps = 2/142 (1%)
Query: 33 DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
+YIPT FDNFSA V +G V L L DTAGQ+++++LRPL Y D+F+L FS+VS +S+
Sbjct: 48 EYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSF 107
Query: 93 ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLVPVTTAQGEELRKQIG 150
+NV +KW+PE++ + P P++LVGT+ DLRED L D PV + L ++I
Sbjct: 108 QNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIK 167
Query: 151 ASYYIECSSKTQQNVKAVFDAA 172
A+ YIECS+ TQ+N+K VFDAA
Sbjct: 168 AASYIECSALTQKNLKEVFDAA 189
>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|D Chain D, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
pdb|3A58|F Chain F, Crystal Structure Of Sec3p - Rho1p Complex From
Saccharomyces Cerevisiae
Length = 188
Score = 147 bits (370), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 71/141 (50%), Positives = 97/141 (68%), Gaps = 2/141 (1%)
Query: 34 YIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYE 93
Y+PTVF+N+ A+V +G V L LWDTAGQEDY+RLRPLSY ++V ++ FS+ S E
Sbjct: 39 YVPTVFENYVADVEVDGRRVELALWDTAGQEDYDRLRPLSYPDSNVVLICFSIDLPDSLE 98
Query: 94 NVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLAD--HPGLVPVTTAQGEELRKQIGA 151
NV +KWI E+ H+ GVP++LVG K+DLR D + G PVT+ +G+ + QIGA
Sbjct: 99 NVQEKWIAEVLHFCQGVPIILVGCKVDLRNDPQTIEQLRQEGQQPVTSQEGQSVADQIGA 158
Query: 152 SYYIECSSKTQQNVKAVFDAA 172
+ Y ECS+KT V+ VF+AA
Sbjct: 159 TGYYECSAKTGYGVREVFEAA 179
>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State
Length = 207
Score = 146 bits (369), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 67/141 (47%), Positives = 96/141 (68%), Gaps = 2/141 (1%)
Query: 34 YIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYE 93
Y+PTVF+N+ A++ +G V L LWDTAGQEDY+RLRPLSY DV ++ FS+ S S E
Sbjct: 54 YVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLE 113
Query: 94 NVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLV--PVTTAQGEELRKQIGA 151
N+ +KW+PE++H+ P VP++LV K DLR D+H + + PV T G + +I A
Sbjct: 114 NIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQA 173
Query: 152 SYYIECSSKTQQNVKAVFDAA 172
Y+ECS+KT++ V+ VF+ A
Sbjct: 174 YDYLECSAKTKEGVREVFETA 194
>pdb|2KB0|A Chain A, Cdc42(T35a)
Length = 178
Score = 146 bits (368), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 68/142 (47%), Positives = 97/142 (68%), Gaps = 2/142 (1%)
Query: 33 DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
+Y+P VFDN++ V+ G LGL+DTAGQEDY+RLRPLSY DVF++ FS+VS +S+
Sbjct: 31 EYVPAVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSF 90
Query: 93 ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLAD--HPGLVPVTTAQGEELRKQIG 150
ENV +KW+PE+ H+ P P +LVGT++DLR+D + P+T E+L + +
Sbjct: 91 ENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLK 150
Query: 151 ASYYIECSSKTQQNVKAVFDAA 172
A Y+ECS+ TQ+ +K VFD A
Sbjct: 151 AVKYVECSALTQKGLKNVFDEA 172
>pdb|1CF4|A Chain A, Cdc42ACK GTPASE-Binding Domain Complex
pdb|1E0A|A Chain A, Cdc42 Complexed With The Gtpase Binding Domain Of P21
Activated Kinase
Length = 184
Score = 145 bits (366), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 70/143 (48%), Positives = 99/143 (69%), Gaps = 4/143 (2%)
Query: 33 DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
+Y+PTVFDN++ V+ G LGL+DTAG EDY+RLRPLSY DVF++ FS+VS +S+
Sbjct: 31 EYVPTVFDNYAVTVMIGGEPYTLGLFDTAGLEDYDRLRPLSYPQTDVFLVCFSVVSPSSF 90
Query: 93 ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK---HYLADHPGLVPVTTAQGEELRKQI 149
ENV +KW+PE+ H+ P P +LVGT++DLR+D LA + P+T E+L + +
Sbjct: 91 ENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKN-KQKPITPETAEKLARDL 149
Query: 150 GASYYIECSSKTQQNVKAVFDAA 172
A Y+ECS+ TQ+ +K VFD A
Sbjct: 150 KAVKYVECSALTQKGLKNVFDEA 172
>pdb|1NF3|A Chain A, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
pdb|1NF3|B Chain B, Structure Of Cdc42 In A Complex With The Gtpase-Binding
Domain Of The Cell Polarity Protein, Par6
Length = 195
Score = 145 bits (366), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 70/143 (48%), Positives = 99/143 (69%), Gaps = 4/143 (2%)
Query: 33 DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
+Y+PTVFDN++ V+ G LGL+DTAG EDY+RLRPLSY DVF++ FS+VS +S+
Sbjct: 35 EYVPTVFDNYAVTVMIGGEPYTLGLFDTAGLEDYDRLRPLSYPQTDVFLVCFSVVSPSSF 94
Query: 93 ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK---HYLADHPGLVPVTTAQGEELRKQI 149
ENV +KW+PE+ H+ P P +LVGT++DLR+D LA + P+T E+L + +
Sbjct: 95 ENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKN-KQKPITPETAEKLARDL 153
Query: 150 GASYYIECSSKTQQNVKAVFDAA 172
A Y+ECS+ TQ+ +K VFD A
Sbjct: 154 KAVKYVECSALTQKGLKNVFDEA 176
>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein
Rhod
Length = 214
Score = 137 bits (346), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 63/141 (44%), Positives = 92/141 (65%), Gaps = 2/141 (1%)
Query: 34 YIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYE 93
Y PTVF+ + N+ +G V+L +WDTAGQ+DY+RLRPL Y A V +L F + S S++
Sbjct: 63 YTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFD 122
Query: 94 NVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLAD--HPGLVPVTTAQGEELRKQIGA 151
N+ +W PE+ H+ VP+++VG K DLR+DK + GL PVT +G+E+ + +GA
Sbjct: 123 NIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGA 182
Query: 152 SYYIECSSKTQQNVKAVFDAA 172
Y+ECS++ NV AVF A
Sbjct: 183 VAYLECSARLHDNVHAVFQEA 203
>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To
Ehrho1-Gtpgammas
Length = 188
Score = 118 bits (296), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 60/139 (43%), Positives = 88/139 (63%), Gaps = 8/139 (5%)
Query: 34 YIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYE 93
Y+PTVF+NFS + + L LWDTAGQE+Y+RLRPLSY +DV +L F++ +R S++
Sbjct: 51 YVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFD 110
Query: 94 NVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASY 153
N+ KW PE++HY VLVG K+DLR+D G VT +G++L +++G
Sbjct: 111 NISTKWEPEIKHYIDTAKTVLVGLKVDLRKD--------GSDDVTKQEGDDLCQKLGCVA 162
Query: 154 YIECSSKTQQNVKAVFDAA 172
YIE SS + + VF+ +
Sbjct: 163 YIEASSVAKIGLNEVFEKS 181
>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REF|A Chain A, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium
pdb|3REG|A Chain A, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
pdb|3REG|B Chain B, Crystal Structure Of Ehrho1 Bound To A Gtp Analog And
Magnesium
Length = 194
Score = 118 bits (295), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 60/139 (43%), Positives = 88/139 (63%), Gaps = 8/139 (5%)
Query: 34 YIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYE 93
Y+PTVF+NFS + + L LWDTAGQE+Y+RLRPLSY +DV +L F++ +R S++
Sbjct: 52 YVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFD 111
Query: 94 NVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASY 153
N+ KW PE++HY VLVG K+DLR+D G VT +G++L +++G
Sbjct: 112 NISTKWEPEIKHYIDTAKTVLVGLKVDLRKD--------GSDDVTKQEGDDLCQKLGCVA 163
Query: 154 YIECSSKTQQNVKAVFDAA 172
YIE SS + + VF+ +
Sbjct: 164 YIEASSVAKIGLNEVFEKS 182
>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
pdb|2V55|D Chain D, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe
Complex Structure
Length = 200
Score = 112 bits (280), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 55/143 (38%), Positives = 89/143 (62%), Gaps = 3/143 (2%)
Query: 33 DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
+Y+PTVF+N++A+ + + L LWDT+G Y+ +RPLSY +D ++ F + +
Sbjct: 51 NYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETL 110
Query: 93 ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLAD--HPGLVPVTTAQGEELRKQIG 150
++VLKKW E+Q + P ++LVG K DLR D L + + PV+ QG + KQIG
Sbjct: 111 DSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIG 170
Query: 151 ASYYIECSS-KTQQNVKAVFDAA 172
A+ YIECS+ +++ +V+ +F A
Sbjct: 171 AATYIECSALQSENSVRDIFHVA 193
>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS
Length = 184
Score = 112 bits (280), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 55/143 (38%), Positives = 89/143 (62%), Gaps = 3/143 (2%)
Query: 33 DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
+Y+PTVF+N++A+ + + L LWDT+G Y+ +RPLSY +D ++ F + +
Sbjct: 35 NYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETL 94
Query: 93 ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLAD--HPGLVPVTTAQGEELRKQIG 150
++VLKKW E+Q + P ++LVG K DLR D L + + PV+ QG + KQIG
Sbjct: 95 DSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIG 154
Query: 151 ASYYIECSS-KTQQNVKAVFDAA 172
A+ YIECS+ +++ +V+ +F A
Sbjct: 155 AATYIECSALQSENSVRDIFHVA 177
>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
pdb|1GWN|C Chain C, The Crystal Structure Of The Core Domain Of RhoeRND3 - A
Constitutively Activated Small G Protein
Length = 205
Score = 112 bits (279), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 55/143 (38%), Positives = 89/143 (62%), Gaps = 3/143 (2%)
Query: 33 DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
+Y+PTVF+N++A+ + + L LWDT+G Y+ +RPLSY +D ++ F + +
Sbjct: 56 NYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETL 115
Query: 93 ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLAD--HPGLVPVTTAQGEELRKQIG 150
++VLKKW E+Q + P ++LVG K DLR D L + + PV+ QG + KQIG
Sbjct: 116 DSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIG 175
Query: 151 ASYYIECSS-KTQQNVKAVFDAA 172
A+ YIECS+ +++ +V+ +F A
Sbjct: 176 AATYIECSALQSENSVRDIFHVA 198
>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
pdb|2CLS|B Chain B, The Crystal Structure Of The Human Rnd1 Gtpase In The
Active Gtp Bound State
Length = 198
Score = 104 bits (260), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 53/142 (37%), Positives = 83/142 (58%), Gaps = 3/142 (2%)
Query: 34 YIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYE 93
Y+PTVF+N++A + E V L LWDT+G Y+ +RPL Y +D +L F + + +
Sbjct: 40 YVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVD 99
Query: 94 NVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLAD--HPGLVPVTTAQGEELRKQIGA 151
+ LKKW E+ Y P V+L+G K DLR D L + H P++ QG + KQ+GA
Sbjct: 100 SALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGA 159
Query: 152 SYYIECSSKT-QQNVKAVFDAA 172
Y+E S+ T ++++ ++F A
Sbjct: 160 EIYLEGSAFTSEKSIHSIFRTA 181
>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1
Length = 214
Score = 104 bits (259), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 53/142 (37%), Positives = 83/142 (58%), Gaps = 3/142 (2%)
Query: 34 YIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYE 93
Y+PTVF+N++A + E V L LWDT+G Y+ +RPL Y +D +L F + + +
Sbjct: 56 YVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVD 115
Query: 94 NVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLAD--HPGLVPVTTAQGEELRKQIGA 151
+ LKKW E+ Y P V+L+G K DLR D L + H P++ QG + KQ+GA
Sbjct: 116 SALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGA 175
Query: 152 SYYIECSSKT-QQNVKAVFDAA 172
Y+E S+ T ++++ ++F A
Sbjct: 176 EIYLEGSAFTSEKSIHSIFRTA 197
>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
pdb|2REX|D Chain D, Crystal Structure Of The Effector Domain Of Plxnb1 Bound
With Rnd1 Gtpase
Length = 197
Score = 104 bits (259), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 53/142 (37%), Positives = 83/142 (58%), Gaps = 3/142 (2%)
Query: 34 YIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYE 93
Y+PTVF+N++A + E V L LWDT+G Y+ +RPL Y +D +L F + + +
Sbjct: 39 YVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVD 98
Query: 94 NVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLAD--HPGLVPVTTAQGEELRKQIGA 151
+ LKKW E+ Y P V+L+G K DLR D L + H P++ QG + KQ+GA
Sbjct: 99 SALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGA 158
Query: 152 SYYIECSSKT-QQNVKAVFDAA 172
Y+E S+ T ++++ ++F A
Sbjct: 159 EIYLEGSAFTSEKSIHSIFRTA 180
>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A
pdb|2EFC|D Chain D, Ara7-GdpATVPS9A
pdb|2EFD|B Chain B, Ara7ATVPS9A
pdb|2EFD|D Chain D, Ara7ATVPS9A
pdb|2EFE|B Chain B, Ara7-Gdpnh2ATVPS9A
pdb|2EFE|D Chain D, Ara7-Gdpnh2ATVPS9A
pdb|2EFH|B Chain B, Ara7-GdpATVPS9A(D185N)
pdb|2EFH|D Chain D, Ara7-GdpATVPS9A(D185N)
pdb|4G01|B Chain B, Ara7-gdp-ca2+/vps9a
Length = 181
Score = 80.1 bits (196), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 45/129 (34%), Positives = 68/129 (52%), Gaps = 13/129 (10%)
Query: 42 FSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIP 101
FS + TV +WDTAGQE Y+ L P+ YRGA ++ F + ++AS+E KKW+
Sbjct: 50 FSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERA-KKWVQ 108
Query: 102 ELQ-HYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK 160
ELQ +P + + L G K DL + + TA+ + Q +++E S+K
Sbjct: 109 ELQAQGNPNMVMALAGNKSDLLDARK-----------VTAEDAQTYAQENGLFFMETSAK 157
Query: 161 TQQNVKAVF 169
T NVK +F
Sbjct: 158 TATNVKEIF 166
>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
pdb|2ERY|B Chain B, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
Length = 172
Score = 74.7 bits (182), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 74/141 (52%), Gaps = 14/141 (9%)
Query: 31 IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA 90
+ DY PT+ D+++ V + L + DTAGQE++ +R R + F+L FS+ R
Sbjct: 31 VTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLLVFSVTDRG 90
Query: 91 SYENVLK--KWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ 148
S+E + K + I ++ P++L+G K DL DH VT +G++L +Q
Sbjct: 91 SFEEIYKFQRQILRVKDRDE-FPMILIGNKADL--------DHQR--QVTQEEGQQLARQ 139
Query: 149 IGASYYIECSSKTQQNVKAVF 169
+ + Y+E S+K + NV F
Sbjct: 140 LKVT-YMEASAKIRMNVDQAF 159
>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase
Rab1a
Length = 175
Score = 73.6 bits (179), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 48/138 (34%), Positives = 71/138 (51%), Gaps = 14/138 (10%)
Query: 34 YIPTVFDNFSANVVA-EGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
YI T+ +F ++ E TV L +WDTAGQE + + YRGA ++ + + R S+
Sbjct: 38 YISTIGVDFKIRTISLENKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDRDSF 97
Query: 93 ENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA 151
+NV K+WI E+ Y+ V +LVG K DL + VT+ +G EL G
Sbjct: 98 DNV-KQWIQEIDRYAMENVNKLLVGNKCDLVSKR----------VVTSDEGRELADSHGI 146
Query: 152 SYYIECSSKTQQNVKAVF 169
+IE S+K NV+ F
Sbjct: 147 K-FIETSAKNAYNVEQAF 163
>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp
Analogue
Length = 180
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/162 (32%), Positives = 80/162 (49%), Gaps = 28/162 (17%)
Query: 27 GRSSIWD-YIPTVFDNFSANVVA----------EGTTVNLGLWDTAGQEDYNRLRPLSYR 75
G+SS+ + Y+ FD+ + + + +G V L +WDTAGQE + LR YR
Sbjct: 19 GKSSLMNRYVTNKFDSQAFHTIGVEFLNRDLEVDGRFVTLQIWDTAGQERFKSLRTPFYR 78
Query: 76 GADVFVLAFSLVSRASYENVLKKWIPELQHYS-----PGVPVVLVGTKLDLREDKHYLAD 130
GAD +L FS+ R S+EN L W E +Y+ P V++G K+D +ED+
Sbjct: 79 GADCCLLTFSVDDRQSFEN-LGNWQKEFIYYADVKDPEHFPFVVLGNKVD-KEDRQ---- 132
Query: 131 HPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 172
VTT + + + G Y+E S+K NV F+ A
Sbjct: 133 ------VTTEEAQTWCMENGDYPYLETSAKDDTNVTVAFEEA 168
>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|B Chain B, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|C Chain C, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|6Q21|D Chain D, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
pdb|1IOZ|A Chain A, Crystal Structure Of The C-Ha-Ras Protein Prepared By The
Cell-Free Synthesis
pdb|1AA9|A Chain A, Human C-Ha-Ras(1-171)(Dot)gdp, Nmr, Minimized Average
Structure
pdb|1Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 76/141 (53%), Gaps = 15/141 (10%)
Query: 31 IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA 90
+ +Y PT+ D++ VV +G T L + DTAGQE+Y+ +R R + F+ F++ +
Sbjct: 29 VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTK 88
Query: 91 SYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ 148
S+E++ ++ I ++ S VP+VLVG K DL V + Q ++L +
Sbjct: 89 SFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AARTVESRQAQDLARS 136
Query: 149 IGASYYIECSSKTQQNVKAVF 169
G YIE S+KT+Q V+ F
Sbjct: 137 YGIP-YIETSAKTRQGVEDAF 156
>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The
Catalytic Domains Of Normal Ras Protein And An Oncogenic
Mutant Complexed With Gsp
Length = 171
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 76/141 (53%), Gaps = 15/141 (10%)
Query: 31 IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA 90
+ +Y PT+ D++ VV +G T L + DTAGQE+Y+ +R R + F+ F++ +
Sbjct: 29 VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTK 88
Query: 91 SYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ 148
S+E++ ++ I ++ S VP+VLVG K DL V + Q ++L +
Sbjct: 89 SFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AARTVESRQAQDLARS 136
Query: 149 IGASYYIECSSKTQQNVKAVF 169
G YIE S+KT+Q V+ F
Sbjct: 137 YGIP-YIETSAKTRQGVEDAF 156
>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 72.0 bits (175), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 76/141 (53%), Gaps = 15/141 (10%)
Query: 31 IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA 90
+ +Y PT+ D++ VV +G T L + DTAGQE+Y+ +R R + F+ F++ +
Sbjct: 29 VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTK 88
Query: 91 SYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ 148
S+E++ ++ I ++ S VP+VLVG K DL V + Q ++L +
Sbjct: 89 SFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AARTVESRQAQDLARS 136
Query: 149 IGASYYIECSSKTQQNVKAVF 169
G YIE S+KT+Q V+ F
Sbjct: 137 YGIP-YIETSAKTRQGVEDAF 156
>pdb|1WQ1|R Chain R, Ras-Rasgap Complex
pdb|1BKD|R Chain R, Complex Of Human H-Ras With Human Sos-1
pdb|1CTQ|A Chain A, Structure Of P21ras In Complex With Gppnhp At 100 K
pdb|1QRA|A Chain A, Structure Of P21ras In Complex With Gtp At 100 K
pdb|1K8R|A Chain A, Crystal Structure Of Ras-Bry2rbd Complex
pdb|1NVV|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1NVW|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1P2S|A Chain A, H-Ras 166 In 50% 2,2,2 Triflouroethanol
pdb|1P2T|A Chain A, H-Ras 166 In Aqueous Mother Liqour, Rt
pdb|1P2U|A Chain A, H-Ras In 50% Isopropanol
pdb|1P2V|A Chain A, H-Ras 166 In 60 % 1,6 Hexanediol
pdb|1XD2|B Chain B, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
pdb|121P|A Chain A, Struktur Und Guanosintriphosphat-Hydrolysemechanismus Des
C- Terminal Verkuerzten Menschlichen Krebsproteins
P21-H-Ras
pdb|1CRP|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRQ|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1CRR|A Chain A, The Solution Structure And Dynamics Of Ras P21. Gdp
Determined By Heteronuclear Three And Four Dimensional
Nmr Spectroscopy
pdb|1GNP|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNQ|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|1GNR|A Chain A, X-Ray Crystal Structure Analysis Of The Catalytic Domain
Of The Oncogene Product P21h-Ras Complexed With Caged
Gtp And Mant Dgppnhp
pdb|5P21|A Chain A, Refined Crystal Structure Of The Triphosphate Conformation
Of H-Ras P21 At 1.35 Angstroms Resolution: Implications
For The Mechanism Of Gtp Hydrolysis
pdb|2RGE|A Chain A, Crystal Structure Of H-Ras-Gppnhp
pdb|3K8Y|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3LBH|A Chain A, Ras Soaked In Calcium Acetate
pdb|3LBI|A Chain A, Ras Soaked In Magnesium Acetate And Back Soaked In Calcium
A
pdb|3LBN|A Chain A, Ras Soaked In Magnesium Acetate
pdb|3KUD|A Chain A, Complex Of Ras-Gdp With Rafrbd(A85k)
pdb|3L8Y|A Chain A, Complex Of Ras With Cyclen
pdb|3L8Z|A Chain A, H-Ras Wildtype New Crystal Form
pdb|3RRY|A Chain A, H-Ras Crosslinked Control, Soaked In Aqueous Solution: One
Of 10 In Mscs Set
pdb|3RRZ|A Chain A, H-Ras In 70% Glycerol: One Of 10 In Mscs Set
pdb|3RS0|A Chain A, H-Ras Soaked In Neat Cyclopentanol: One Of 10 In Mscs Set
pdb|3RS2|A Chain A, H-Ras Soaked In 50% 2,2,2-Trifluoroethanol: One Of 10 In
Mscs Set
pdb|3RS3|A Chain A, H-Ras Soaked In Neat Hexane: 1 Of 10 In Mscs Set
pdb|3RS4|A Chain A, H-Ras Soaked In 60% 1,6-Hexanediol: 1 Of 10 In Mscs Set
pdb|3RS5|A Chain A, H-Ras Soaked In 55% Dimethylformamide: 1 Of 10 In Mscs Set
pdb|3RS7|A Chain A, H-Ras Soaked In 50% Isopropanol: 1 Of 10 In Mscs Set
pdb|3RSL|A Chain A, H-Ras Soaked In 90% R,S,R-Bisfuranol: One Of 10 In Mscs
Set
pdb|3RSO|A Chain A, H-Ras Soaked In 20% S,R,S-Bisfuranol: 1 Of 10 In Mscs Set
pdb|3TGP|A Chain A, Room Temperature H-Ras
pdb|4DLS|A Chain A, H-Ras Set 1 Cacl2 'mixed'
pdb|4DLT|A Chain A, H-Ras Set 2 Ca(Oac)2, On
pdb|4DLU|A Chain A, H-Ras Set 1 Ca(Oac)2, On
pdb|4DLW|A Chain A, H-Ras Set 2 Ca(Oac)2DTT, ON
Length = 166
Score = 71.6 bits (174), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 76/141 (53%), Gaps = 15/141 (10%)
Query: 31 IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA 90
+ +Y PT+ D++ VV +G T L + DTAGQE+Y+ +R R + F+ F++ +
Sbjct: 29 VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTK 88
Query: 91 SYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ 148
S+E++ ++ I ++ S VP+VLVG K DL V + Q ++L +
Sbjct: 89 SFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AARTVESRQAQDLARS 136
Query: 149 IGASYYIECSSKTQQNVKAVF 169
G YIE S+KT+Q V+ F
Sbjct: 137 YGIP-YIETSAKTRQGVEDAF 156
>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1HE8|B Chain B, Ras G12v-Pi 3-Kinase Gamma Complex
pdb|2UZI|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv Complex
pdb|2VH5|R Chain R, Crystal Structure Of Hras(G12v) - Anti-Ras Fv (Disulfide
Free Mutant) Complex
pdb|3OIV|A Chain A, H-Rasg12v With Allosteric Switch In The "off" State
pdb|3OIW|A Chain A, H-Rasg12v With Allosteric Switch In The "on" State
Length = 166
Score = 71.6 bits (174), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 76/141 (53%), Gaps = 15/141 (10%)
Query: 31 IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA 90
+ +Y PT+ D++ VV +G T L + DTAGQE+Y+ +R R + F+ F++ +
Sbjct: 29 VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTK 88
Query: 91 SYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ 148
S+E++ ++ I ++ S VP+VLVG K DL V + Q ++L +
Sbjct: 89 SFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AARTVESRQAQDLARS 136
Query: 149 IGASYYIECSSKTQQNVKAVF 169
G YIE S+KT+Q V+ F
Sbjct: 137 YGIP-YIETSAKTRQGVEDAF 156
>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|C Chain C, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
pdb|3LO5|E Chain E, Crystal Structure Of The Dominant Negative S17n Mutant Of
Ras
Length = 166
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 76/141 (53%), Gaps = 15/141 (10%)
Query: 31 IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA 90
+ +Y PT+ D++ VV +G T L + DTAGQE+Y+ +R R + F+ F++ +
Sbjct: 29 VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTK 88
Query: 91 SYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ 148
S+E++ ++ I ++ S VP+VLVG K DL V + Q ++L +
Sbjct: 89 SFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AARTVESRQAQDLARS 136
Query: 149 IGASYYIECSSKTQQNVKAVF 169
G YIE S+KT+Q V+ F
Sbjct: 137 YGIP-YIETSAKTRQGVEDAF 156
>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural
Differences Between Active And Inactive Forms Of
Protooncogenic Ras Proteins
Length = 189
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 76/141 (53%), Gaps = 15/141 (10%)
Query: 31 IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA 90
+ +Y PT+ D++ VV +G T L + DTAGQE+Y+ +R R + F+ F++ +
Sbjct: 29 VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTK 88
Query: 91 SYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ 148
S+E++ ++ I ++ S VP+VLVG K DL V + Q ++L +
Sbjct: 89 SFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AARTVESRQAQDLARS 136
Query: 149 IGASYYIECSSKTQQNVKAVF 169
G YIE S+KT+Q V+ F
Sbjct: 137 YGIP-YIETSAKTRQGVEDAF 156
>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF
pdb|4DLR|A Chain A, H-Ras Peg 400CA(OAC)2, ORDERED OFF
pdb|4DLV|A Chain A, H-Ras Set 2 Cacl2DTT, ORDERED OFF
pdb|4DLX|A Chain A, H-Ras Set 1 Cacl2DTE, ORDERED OFF
pdb|4DLY|A Chain A, Set 1 Cacl2DTT, ORDERED OFF
pdb|4DLZ|A Chain A, H-Ras Set 2 Ca(Oac)2DTE, ORDERED OFF
Length = 166
Score = 71.6 bits (174), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 76/141 (53%), Gaps = 15/141 (10%)
Query: 31 IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA 90
+ +Y PT+ D++ VV +G T L + DTAGQE+Y+ +R R + F+ F++ +
Sbjct: 29 VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDEYMRTGEGFLCVFAINNTK 88
Query: 91 SYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ 148
S+E++ ++ I ++ S VP+VLVG K DL V + Q ++L +
Sbjct: 89 SFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AARTVESRQAQDLARS 136
Query: 149 IGASYYIECSSKTQQNVKAVF 169
G YIE S+KT+Q V+ F
Sbjct: 137 YGIP-YIETSAKTRQGVEDAF 156
>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras
Length = 166
Score = 71.2 bits (173), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 75/141 (53%), Gaps = 15/141 (10%)
Query: 31 IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA 90
+ Y PT+ D++ VV +G T L + DTAGQE+Y+ +R R + F+ F++ +
Sbjct: 29 VEKYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTK 88
Query: 91 SYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ 148
S+E++ ++ I ++ S VP+VLVG K DL V + Q ++L +
Sbjct: 89 SFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AARTVESRQAQDLARS 136
Query: 149 IGASYYIECSSKTQQNVKAVF 169
G YIE S+KT+Q V+ F
Sbjct: 137 YGIP-YIETSAKTRQGVEDAF 156
>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 71.2 bits (173), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 76/141 (53%), Gaps = 15/141 (10%)
Query: 31 IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA 90
+ +Y PT+ D++ VV +G T L + DTAGQE+Y+ +R R + F+ F++ +
Sbjct: 29 VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTK 88
Query: 91 SYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ 148
S+E++ ++ I ++ S VP+VLVG K DL V + Q ++L +
Sbjct: 89 SFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AARTVESRQAQDLARS 136
Query: 149 IGASYYIECSSKTQQNVKAVF 169
G YIE S+KT+Q V+ F
Sbjct: 137 YGIP-YIETSAKTRQGVEDAF 156
>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp
(State 1)
Length = 171
Score = 71.2 bits (173), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 76/141 (53%), Gaps = 15/141 (10%)
Query: 31 IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA 90
+ +Y PT+ D++ VV +G T L + DTAGQE+Y+ +R R + F+ F++ +
Sbjct: 34 VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTK 93
Query: 91 SYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ 148
S+E++ ++ I ++ S VP+VLVG K DL V + Q ++L +
Sbjct: 94 SFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AARTVESRQAQDLARS 141
Query: 149 IGASYYIECSSKTQQNVKAVF 169
G YIE S+KT+Q V+ F
Sbjct: 142 YGIP-YIETSAKTRQGVEDAF 161
>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp
(State 1)
Length = 171
Score = 71.2 bits (173), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 76/141 (53%), Gaps = 15/141 (10%)
Query: 31 IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA 90
+ +Y PT+ D++ VV +G T L + DTAGQE+Y+ +R R + F+ F++ +
Sbjct: 34 VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTK 93
Query: 91 SYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ 148
S+E++ ++ I ++ S VP+VLVG K DL V + Q ++L +
Sbjct: 94 SFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AARTVESRQAQDLARS 141
Query: 149 IGASYYIECSSKTQQNVKAVF 169
G YIE S+KT+Q V+ F
Sbjct: 142 YGIP-YIETSAKTRQGVEDAF 161
>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb
In Its Active Conformation: Significance For Effector
Protein Binding
Length = 174
Score = 71.2 bits (173), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 71/141 (50%), Gaps = 13/141 (9%)
Query: 31 IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA 90
+ DY PT D++ VV +G V + + DTAG EDY +R +R + F+L FS+
Sbjct: 29 VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGLEDYAAIRDNYFRSGEGFLLVFSITEHE 88
Query: 91 SYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ 148
S+ ++ I ++ +P+++VG K DL E + VPV A+ + +
Sbjct: 89 SFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEERRQ--------VPVEEARS---KAE 137
Query: 149 IGASYYIECSSKTQQNVKAVF 169
Y+E S+KT+ NV VF
Sbjct: 138 EWGVQYVETSAKTRANVDKVF 158
>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras
pdb|2C5L|B Chain B, Structure Of Plc Epsilon Ras Association Domain With Hras
Length = 173
Score = 71.2 bits (173), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 76/141 (53%), Gaps = 15/141 (10%)
Query: 31 IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA 90
+ +Y PT+ D++ VV +G T L + DTAGQE+Y+ +R R + F+ F++ +
Sbjct: 36 VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTK 95
Query: 91 SYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ 148
S+E++ ++ I ++ S VP+VLVG K DL V + Q ++L +
Sbjct: 96 SFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AARTVESRQAQDLARS 143
Query: 149 IGASYYIECSSKTQQNVKAVF 169
G YIE S+KT+Q V+ F
Sbjct: 144 YGIP-YIETSAKTRQGVEDAF 163
>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
pdb|1LFD|D Chain D, Crystal Structure Of The Active Ras Protein Complexed With
The Ras-interacting Domain Of Ralgds
Length = 167
Score = 71.2 bits (173), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 74/138 (53%), Gaps = 15/138 (10%)
Query: 34 YIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYE 93
Y PT+ D++ VV +G T L + DTAGQE+Y+ +R R + F+ F++ + S+E
Sbjct: 32 YDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFE 91
Query: 94 NV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA 151
++ ++ I ++ S VP+VLVG K DL V + Q ++L + G
Sbjct: 92 DIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AARTVESRQAQDLARSYGI 139
Query: 152 SYYIECSSKTQQNVKAVF 169
YIE S+KT+Q V+ F
Sbjct: 140 P-YIETSAKTRQGVEDAF 156
>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Gly-12 Mutant Of
P21-H-Ras
Length = 166
Score = 71.2 bits (173), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 76/141 (53%), Gaps = 15/141 (10%)
Query: 31 IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA 90
+ +Y PT+ D++ VV +G T L + DTAGQE+Y+ +R R + F+ F++ +
Sbjct: 29 VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTK 88
Query: 91 SYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ 148
S+E++ ++ I ++ S VP+VLVG K DL V + Q ++L +
Sbjct: 89 SFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AARTVESRQAQDLARS 136
Query: 149 IGASYYIECSSKTQQNVKAVF 169
G YIE S+KT+Q V+ F
Sbjct: 137 YGIP-YIETSAKTRQGVEDAF 156
>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex
Length = 178
Score = 71.2 bits (173), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 44/141 (31%), Positives = 71/141 (50%), Gaps = 13/141 (9%)
Query: 31 IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA 90
+ DY PT D++ VV +G V + + DTAG EDY +R +R + F+L FS+
Sbjct: 33 VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGLEDYAAIRDNYFRSGEGFLLVFSITEHE 92
Query: 91 SYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ 148
S+ ++ I ++ +P+++VG K DL E + VPV A+ + +
Sbjct: 93 SFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEERRQ--------VPVEEARS---KAE 141
Query: 149 IGASYYIECSSKTQQNVKAVF 169
Y+E S+KT+ NV VF
Sbjct: 142 EWGVQYVETSAKTRANVDKVF 162
>pdb|2CLD|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp (2)
Length = 166
Score = 70.9 bits (172), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 76/141 (53%), Gaps = 15/141 (10%)
Query: 31 IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA 90
+ +Y PT+ D++ VV +G T L + DTAGQE+Y+ +R R + F+ F++ +
Sbjct: 29 VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTK 88
Query: 91 SYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ 148
S+E++ ++ I ++ S VP+VLVG K DL V + Q ++L +
Sbjct: 89 SFEDIHQYREQIKRVKD-SDDVPMVLVGNKSDL-----------AARTVESRQAQDLARS 136
Query: 149 IGASYYIECSSKTQQNVKAVF 169
G YIE S+KT+Q V+ F
Sbjct: 137 YGIP-YIETSAKTRQGVEDAF 156
>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido-
Gtp
pdb|1JAI|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Manganese
pdb|1PLJ|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|1PLL|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
pdb|821P|A Chain A, Three-Dimensional Structures And Properties Of A
Transforming And A Nontransforming Glycine-12 Mutant Of
P21h-Ras
Length = 166
Score = 70.9 bits (172), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 76/141 (53%), Gaps = 15/141 (10%)
Query: 31 IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA 90
+ +Y PT+ D++ VV +G T L + DTAGQE+Y+ +R R + F+ F++ +
Sbjct: 29 VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTK 88
Query: 91 SYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ 148
S+E++ ++ I ++ S VP+VLVG K DL V + Q ++L +
Sbjct: 89 SFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AARTVESRQAQDLARS 136
Query: 149 IGASYYIECSSKTQQNVKAVF 169
G YIE S+KT+Q V+ F
Sbjct: 137 YGIP-YIETSAKTRQGVEDAF 156
>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp
Length = 190
Score = 70.9 bits (172), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 49/141 (34%), Positives = 75/141 (53%), Gaps = 15/141 (10%)
Query: 31 IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA 90
+ +Y PT+ D++ VV +G T L + DTAGQE+Y+ +R R + F+ F++ +
Sbjct: 47 VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSK 106
Query: 91 SYE--NVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ 148
S+ N+ ++ I ++ S VP+VLVG K DL P V T Q EL K
Sbjct: 107 SFADINLYREQIKRVKD-SDDVPMVLVGNKCDL----------PTRT-VDTKQAHELAKS 154
Query: 149 IGASYYIECSSKTQQNVKAVF 169
G +IE S+KT+Q V+ F
Sbjct: 155 YGIP-FIETSAKTRQGVEDAF 174
>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In
Costello Syndrome, Bound To Mg-Gdp
Length = 166
Score = 70.9 bits (172), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 76/141 (53%), Gaps = 15/141 (10%)
Query: 31 IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA 90
+ +Y PT+ D++ VV +G T L + DTAGQE+Y+ +R R + F+ F++ +
Sbjct: 29 VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTK 88
Query: 91 SYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ 148
S+E++ ++ I ++ S VP+VLVG + DL V + Q ++L +
Sbjct: 89 SFEDIHQYREQIKRVKD-SDDVPMVLVGNRCDL-----------AARTVESRQAQDLARS 136
Query: 149 IGASYYIECSSKTQQNVKAVF 169
G YIE S+KT+Q V+ F
Sbjct: 137 YGIP-YIETSAKTRQGVEDAF 156
>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DST|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSU|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
pdb|4DSN|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras
And Inhibit Sos-Mediated Nucleotide Exchange Activity
Length = 189
Score = 70.9 bits (172), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 76/141 (53%), Gaps = 15/141 (10%)
Query: 31 IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA 90
+ +Y PT+ D++ VV +G T L + DTAGQE+Y+ +R R + F+ F++ +
Sbjct: 30 VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTK 89
Query: 91 SYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ 148
S+E++ ++ I ++ S VP+VLVG K DL P V T Q ++L +
Sbjct: 90 SFEDIHHYREQIKRVKD-SEDVPMVLVGNKCDL----------PSRT-VDTKQAQDLARS 137
Query: 149 IGASYYIECSSKTQQNVKAVF 169
G +IE S+KT+Q V F
Sbjct: 138 YGIP-FIETSAKTRQGVDDAF 157
>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|B Chain B, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
pdb|1IAQ|C Chain C, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser
(T35s) Complexed With Guanosine-5'-[b,G-Imido]
Triphosphate
Length = 166
Score = 70.5 bits (171), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 76/141 (53%), Gaps = 15/141 (10%)
Query: 31 IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA 90
+ +Y P++ D++ VV +G T L + DTAGQE+Y+ +R R + F+ F++ +
Sbjct: 29 VDEYDPSIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTK 88
Query: 91 SYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ 148
S+E++ ++ I ++ S VP+VLVG K DL V + Q ++L +
Sbjct: 89 SFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AARTVESRQAQDLARS 136
Query: 149 IGASYYIECSSKTQQNVKAVF 169
G YIE S+KT+Q V+ F
Sbjct: 137 YGIP-YIETSAKTRQGVEDAF 156
>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPY|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 70.5 bits (171), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 76/141 (53%), Gaps = 15/141 (10%)
Query: 31 IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA 90
+ +Y PT+ D++ VV +G T L + DTAGQE+Y+ +R R + F+ F++ +
Sbjct: 30 VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTK 89
Query: 91 SYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ 148
S+E++ ++ I ++ S VP+VLVG K DL P V T Q ++L +
Sbjct: 90 SFEDIHHYREQIKRVKD-SEDVPMVLVGNKSDL----------PSRT-VDTKQAQDLARS 137
Query: 149 IGASYYIECSSKTQQNVKAVF 169
G +IE S+KT+Q V F
Sbjct: 138 YGIP-FIETSAKTRQGVDDAF 157
>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPV|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
pdb|4EPW|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 70.5 bits (171), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 76/141 (53%), Gaps = 15/141 (10%)
Query: 31 IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA 90
+ +Y PT+ D++ VV +G T L + DTAGQE+Y+ +R R + F+ F++ +
Sbjct: 30 VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTK 89
Query: 91 SYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ 148
S+E++ ++ I ++ S VP+VLVG K DL P V T Q ++L +
Sbjct: 90 SFEDIHHYREQIKRVKD-SEDVPMVLVGNKSDL----------PSRT-VDTKQAQDLARS 137
Query: 149 IGASYYIECSSKTQQNVKAVF 169
G +IE S+KT+Q V F
Sbjct: 138 YGIP-FIETSAKTRQGVDDAF 157
>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|A Chain A, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|B Chain B, Allosteric Modulation Of H-Ras Gtpase
pdb|3K9L|C Chain C, Allosteric Modulation Of H-Ras Gtpase
Length = 166
Score = 70.1 bits (170), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 76/141 (53%), Gaps = 15/141 (10%)
Query: 31 IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA 90
+ ++ PT+ D++ VV +G T L + DTAGQE+Y+ +R R + F+ F++ +
Sbjct: 29 VDEFDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTK 88
Query: 91 SYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ 148
S+E++ ++ I ++ S VP+VLVG K DL V + Q ++L +
Sbjct: 89 SFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AARTVESRQAQDLARS 136
Query: 149 IGASYYIECSSKTQQNVKAVF 169
G YIE S+KT+Q V+ F
Sbjct: 137 YGIP-YIETSAKTRQGVEDAF 156
>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp
Length = 166
Score = 70.1 bits (170), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 76/141 (53%), Gaps = 15/141 (10%)
Query: 31 IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA 90
+ +Y PT+ D++ VV +G T L + DTAG+E+Y+ +R R + F+ F++ +
Sbjct: 29 VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGKEEYSAMRDQYMRTGEGFLCVFAINNTK 88
Query: 91 SYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ 148
S+E++ ++ I ++ S VP+VLVG K DL V + Q ++L +
Sbjct: 89 SFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AARTVESRQAQDLARS 136
Query: 149 IGASYYIECSSKTQQNVKAVF 169
G YIE S+KT+Q V+ F
Sbjct: 137 YGIP-YIETSAKTRQGVEDAF 156
>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form
pdb|1LF5|A Chain A, Crystal Structure Of Rasa59g In The Gdp-Bound Form
pdb|1NVU|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVU|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
pdb|1NVX|R Chain R, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-Specific Nucleotide Exchange Factor Sos
Length = 166
Score = 70.1 bits (170), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 75/141 (53%), Gaps = 15/141 (10%)
Query: 31 IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA 90
+ +Y PT+ D++ VV +G T L + DT GQE+Y+ +R R + F+ F++ +
Sbjct: 29 VDEYDPTIEDSYRKQVVIDGETCLLDILDTGGQEEYSAMRDQYMRTGEGFLCVFAINNTK 88
Query: 91 SYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ 148
S+E++ ++ I ++ S VP+VLVG K DL V + Q ++L +
Sbjct: 89 SFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AARTVESRQAQDLARS 136
Query: 149 IGASYYIECSSKTQQNVKAVF 169
G YIE S+KT+Q V+ F
Sbjct: 137 YGIP-YIETSAKTRQGVEDAF 156
>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|3KKN|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp
pdb|2LCF|A Chain A, Solution Structure Of Gppnhp-Bound H-Rast35s Mutant
Protein
Length = 172
Score = 70.1 bits (170), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 76/141 (53%), Gaps = 15/141 (10%)
Query: 31 IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA 90
+ +Y P++ D++ VV +G T L + DTAGQE+Y+ +R R + F+ F++ +
Sbjct: 35 VDEYDPSIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTK 94
Query: 91 SYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ 148
S+E++ ++ I ++ S VP+VLVG K DL V + Q ++L +
Sbjct: 95 SFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AARTVESRQAQDLARS 142
Query: 149 IGASYYIECSSKTQQNVKAVF 169
G YIE S+KT+Q V+ F
Sbjct: 143 YGIP-YIETSAKTRQGVEDAF 162
>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With
Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And
Magnesium
pdb|1PLK|A Chain A, Crystallographic Studies On P21h-Ras Using Synchrotron
Laue Method: Improvement Of Crystal Quality And
Monitoring Of The Gtpase Reaction At Different Time
Points
Length = 166
Score = 70.1 bits (170), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 76/141 (53%), Gaps = 15/141 (10%)
Query: 31 IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA 90
+ +Y PT+ D++ VV +G T L + DTAGQE+Y+ +R R + F+ F++ +
Sbjct: 29 VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTK 88
Query: 91 SYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ 148
S+E++ ++ I ++ S VP+VLVG K DL V + Q ++L +
Sbjct: 89 SFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AGRTVESRQAQDLARS 136
Query: 149 IGASYYIECSSKTQQNVKAVF 169
G YIE S+KT+Q V+ F
Sbjct: 137 YGIP-YIETSAKTRQGVEDAF 156
>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase
Length = 179
Score = 70.1 bits (170), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 49/162 (30%), Positives = 78/162 (48%), Gaps = 28/162 (17%)
Query: 27 GRSSIWD-YIPTVFDN----------FSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYR 75
G+SS+ + Y+ FD+ + ++ +G V + +WDTAGQE + LR YR
Sbjct: 23 GKSSLMNRYVTNKFDSQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYR 82
Query: 76 GADVFVLAFSLVSRASYENVLKKWIPELQHYS-----PGVPVVLVGTKLDLREDKHYLAD 130
G+D +L FS+ S++N L W E +Y+ P V++G K D++E +
Sbjct: 83 GSDCCLLTFSVDDSQSFQN-LSNWKKEFIYYADVKEPESFPFVILGNKTDIKERQ----- 136
Query: 131 HPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 172
V+T + + K G Y E S+K NV A F+ A
Sbjct: 137 ------VSTEEAQAWCKDNGDYPYFETSAKDSTNVAAAFEEA 172
>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 70.1 bits (170), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 75/141 (53%), Gaps = 15/141 (10%)
Query: 31 IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA 90
+ +Y PT+ D++ VV +G T L + DT GQE+Y+ +R R + F+ F++ +
Sbjct: 29 VDEYDPTIEDSYRKQVVIDGETCLLDILDTTGQEEYSAMRDQYMRTGEGFLCVFAINNTK 88
Query: 91 SYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ 148
S+E++ ++ I ++ S VP+VLVG K DL V + Q ++L +
Sbjct: 89 SFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AARTVESRQAQDLARS 136
Query: 149 IGASYYIECSSKTQQNVKAVF 169
G YIE S+KT+Q V+ F
Sbjct: 137 YGIP-YIETSAKTRQGVEDAF 156
>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex
With Gdp
Length = 192
Score = 70.1 bits (170), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 61/121 (50%), Gaps = 12/121 (9%)
Query: 50 GTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SP 108
G + L +WDTAGQE +N + YR A +L + + + ++++ L KW+ + Y S
Sbjct: 72 GKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDD-LPKWMKMIDKYASE 130
Query: 109 GVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAV 168
++LVG KLD D+ +T QGE+ +QI + E S+K NV +
Sbjct: 131 DAELLLVGNKLDCETDRE----------ITRQQGEKFAQQITGMRFCEASAKDNFNVDEI 180
Query: 169 F 169
F
Sbjct: 181 F 181
>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 69.7 bits (169), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 76/141 (53%), Gaps = 15/141 (10%)
Query: 31 IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA 90
+ +Y PT+ +++ VV +G T L + DTAGQE+Y+ +R R + F+ F++ +
Sbjct: 29 VDEYDPTIEESYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTK 88
Query: 91 SYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ 148
S+E++ ++ I ++ S VP+VLVG K DL V + Q ++L +
Sbjct: 89 SFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AARTVESRQAQDLARS 136
Query: 149 IGASYYIECSSKTQQNVKAVF 169
G YIE S+KT+Q V+ F
Sbjct: 137 YGIP-YIETSAKTRQGVEDAF 156
>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And
Inhibit Sos- Mediated Activation
Length = 170
Score = 69.7 bits (169), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 76/141 (53%), Gaps = 15/141 (10%)
Query: 31 IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA 90
+ +Y PT+ D++ VV +G T L + DTAGQE+Y+ +R R + F+ F++ +
Sbjct: 30 VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTK 89
Query: 91 SYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ 148
S+E++ ++ I ++ S VP+VLVG K DL P V T Q ++L +
Sbjct: 90 SFEDIHHYREQIKRVKD-SEDVPMVLVGNKSDL----------PSRT-VDTKQAQDLARS 137
Query: 149 IGASYYIECSSKTQQNVKAVF 169
G +IE S+KT+Q V F
Sbjct: 138 YGIP-FIETSAKTRQGVDDAF 157
>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
Length = 166
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 75/141 (53%), Gaps = 15/141 (10%)
Query: 31 IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA 90
+ +Y PT+ D++ VV +G T L + DTAG E+Y+ +R R + F+ F++ +
Sbjct: 29 VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGHEEYSAMRDQYMRTGEGFLCVFAINNTK 88
Query: 91 SYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ 148
S+E++ ++ I ++ S VP+VLVG K DL V + Q ++L +
Sbjct: 89 SFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AARTVESRQAQDLARS 136
Query: 149 IGASYYIECSSKTQQNVKAVF 169
G YIE S+KT+Q V+ F
Sbjct: 137 YGIP-YIETSAKTRQGVEDAF 156
>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By
Isoleucine
Length = 166
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 75/141 (53%), Gaps = 15/141 (10%)
Query: 31 IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA 90
+ +Y PT+ D++ VV +G L + DTAGQE+Y+ +R R + F+ F++ +
Sbjct: 29 VDEYDPTIEDSYRKQVVIDGEICLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTK 88
Query: 91 SYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ 148
S+E++ ++ I ++ S VP+VLVG K DL V + Q ++L +
Sbjct: 89 SFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AARTVESRQAQDLARS 136
Query: 149 IGASYYIECSSKTQQNVKAVF 169
G YIE S+KT+Q V+ F
Sbjct: 137 YGIP-YIETSAKTRQGVEDAF 156
>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a
Mutant
Length = 166
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 75/141 (53%), Gaps = 15/141 (10%)
Query: 31 IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA 90
+ +Y PT+ D++ VV +G T L + DTA QE+Y+ +R R + F+ F++ +
Sbjct: 29 VDEYDPTIEDSYRKQVVIDGETCLLDILDTAAQEEYSAMRDQYMRTGEGFLCVFAINNTK 88
Query: 91 SYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ 148
S+E++ ++ I ++ S VP+VLVG K DL V + Q ++L +
Sbjct: 89 SFEDIHQYREQIKRVKD-SDDVPMVLVGNKXDL-----------AARTVESRQAQDLARS 136
Query: 149 IGASYYIECSSKTQQNVKAVF 169
G YIE S+KT+Q V+ F
Sbjct: 137 YGIP-YIETSAKTRQGVEDAF 156
>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant
Length = 167
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 75/141 (53%), Gaps = 15/141 (10%)
Query: 31 IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA 90
+ +Y PT+ D++ VV +G T L + DTA QE+Y+ +R R + F+ F++ +
Sbjct: 29 VDEYDPTIEDSYRKQVVIDGETCLLDILDTAAQEEYSAMRDQYMRTGEGFLCVFAINNTK 88
Query: 91 SYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ 148
S+E++ ++ I ++ S VP+VLVG K DL V + Q ++L +
Sbjct: 89 SFEDIHQYREQIKRVKD-SDDVPMVLVGNKXDL-----------AARTVESRQAQDLARS 136
Query: 149 IGASYYIECSSKTQQNVKAVF 169
G YIE S+KT+Q V+ F
Sbjct: 137 YGIP-YIETSAKTRQGVEDAF 156
>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gppnhp
pdb|2CL6|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With S-Caged Gtp
pdb|2CL7|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp
pdb|2CLC|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gtp (2)
pdb|2EVW|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With R-Caged Gtp
pdb|2CE2|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras
P21 In Complex With Gdp
Length = 166
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 73/136 (53%), Gaps = 15/136 (11%)
Query: 36 PTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV 95
PT+ D++ VV +G T L + DTAGQE+Y+ +R R + F+ F++ + S+E++
Sbjct: 34 PTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDI 93
Query: 96 --LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASY 153
++ I ++ S VP+VLVG K DL V + Q ++L + G
Sbjct: 94 HQYREQIKRVKD-SDDVPMVLVGNKSDL-----------AARTVESRQAQDLARSYGIP- 140
Query: 154 YIECSSKTQQNVKAVF 169
YIE S+KT+Q V+ F
Sbjct: 141 YIETSAKTRQGVEDAF 156
>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|B Chain B, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|C Chain C, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|D Chain D, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|E Chain E, Human K-Ras In Complex With A Gtp Analogue
pdb|3GFT|F Chain F, Human K-Ras In Complex With A Gtp Analogue
Length = 187
Score = 69.3 bits (168), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 75/141 (53%), Gaps = 15/141 (10%)
Query: 31 IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA 90
+ +Y PT+ D++ VV +G T L + DTAG E+Y+ +R R + F+ F++ +
Sbjct: 47 VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGHEEYSAMRDQYMRTGEGFLCVFAINNTK 106
Query: 91 SYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ 148
S+E++ ++ I ++ S VP+VLVG K DL P V T Q ++L +
Sbjct: 107 SFEDIHHYREQIKRVKD-SEDVPMVLVGNKCDL----------PSRT-VDTKQAQDLARS 154
Query: 149 IGASYYIECSSKTQQNVKAVF 169
G +IE S+KT+Q V F
Sbjct: 155 YGIP-FIETSAKTRQGVDDAF 174
>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|C Chain C, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|E Chain E, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|G Chain G, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
Length = 181
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 71/138 (51%), Gaps = 14/138 (10%)
Query: 34 YIPTVFDNFSANVVA-EGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
YI T+ +F + +G T+ L +WDTAGQE + + YRGA ++ + + + SY
Sbjct: 38 YISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESY 97
Query: 93 ENVLKKWIPELQHY-SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA 151
NV K+W+ E+ Y S V +LVG K DL K +V TTA+ E +G
Sbjct: 98 ANV-KQWLQEIDRYASENVNKLLVGNKSDLTTKK--------VVDNTTAK--EFADSLGI 146
Query: 152 SYYIECSSKTQQNVKAVF 169
++E S+K NV+ F
Sbjct: 147 P-FLETSAKNATNVEQAF 163
>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form
Length = 166
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 75/141 (53%), Gaps = 15/141 (10%)
Query: 31 IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA 90
+ +Y PT+ D++ VV +G T L + DTAG E+Y+ +R R + F+ F++ +
Sbjct: 29 VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGGEEYSAMRDQYMRTGEGFLCVFAINNTK 88
Query: 91 SYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ 148
S+E++ ++ I ++ S VP+VLVG K DL V + Q ++L +
Sbjct: 89 SFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AARTVESRQAQDLARS 136
Query: 149 IGASYYIECSSKTQQNVKAVF 169
G YIE S+KT+Q V+ F
Sbjct: 137 YGIP-YIETSAKTRQGVEDAF 156
>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With
Gppnhp
Length = 170
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 81/181 (44%), Gaps = 42/181 (23%)
Query: 13 TQVTSFLLYVL--SVSGRSS-IWDYIPTVFDNFSANVVA----------EGTTVNLGLWD 59
++ F L +L S+ G+SS + ++ F F + + + TTV +WD
Sbjct: 2 NKICQFKLVLLGESLVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWD 61
Query: 60 TAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ-HYSPGVPVVLVGTK 118
TAGQE Y+ L P+ YRGA ++ + + + S+ K W+ ELQ SP + + L G K
Sbjct: 62 TAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARA-KNWVKELQRQASPNIVIALSGNK 120
Query: 119 LDL--------REDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFD 170
DL +E + Y D+ L ++E S+KT NV +F
Sbjct: 121 ADLANKRAVDFQEAQSYADDNSLL-------------------FMETSAKTSMNVNEIFM 161
Query: 171 A 171
A
Sbjct: 162 A 162
>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
pdb|1WMS|B Chain B, High Resolution Crystal Structure Of Human Rab9 Gtpase: A
Novel Antiviral Drug Target
Length = 177
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 77/162 (47%), Gaps = 28/162 (17%)
Query: 27 GRSSIWD-YIPTVFDN----------FSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYR 75
G+SS+ + Y+ FD + ++ +G V + +WDTAGQE + LR YR
Sbjct: 19 GKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYR 78
Query: 76 GADVFVLAFSLVSRASYENVLKKWIPELQHYS-----PGVPVVLVGTKLDLREDKHYLAD 130
G+D +L FS+ S++N L W E +Y+ P V++G K+D+ E +
Sbjct: 79 GSDCCLLTFSVDDSQSFQN-LSNWKKEFIYYADVKEPESFPFVILGNKIDISERQ----- 132
Query: 131 HPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 172
V+T + + + G Y E S+K NV A F+ A
Sbjct: 133 ------VSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEA 168
>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef
Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA
pdb|3NKV|A Chain A, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|3NKV|B Chain B, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|4HLQ|B Chain B, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|D Chain D, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|F Chain F, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|H Chain H, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|J Chain J, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
Length = 175
Score = 68.6 bits (166), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 71/138 (51%), Gaps = 14/138 (10%)
Query: 34 YIPTVFDNFSANVVA-EGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
YI T+ +F + +G T+ L +WDTAGQE + + YRGA ++ + + + SY
Sbjct: 38 YISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESY 97
Query: 93 ENVLKKWIPELQHY-SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA 151
NV K+W+ E+ Y S V +LVG K DL K +V TTA+ E +G
Sbjct: 98 ANV-KQWLQEIDRYASENVNKLLVGNKSDLTTKK--------VVDNTTAK--EFADSLGI 146
Query: 152 SYYIECSSKTQQNVKAVF 169
++E S+K NV+ F
Sbjct: 147 P-FLETSAKNATNVEQAF 163
>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
pdb|1S8F|B Chain B, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer
With An Active Conformation Of Switch Ii
Length = 177
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 77/162 (47%), Gaps = 28/162 (17%)
Query: 27 GRSSIWD-YIPTVFDN----------FSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYR 75
G+SS+ + Y+ FD + ++ +G V + +WDTAGQE + LR YR
Sbjct: 21 GKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYR 80
Query: 76 GADVFVLAFSLVSRASYENVLKKWIPELQHYS-----PGVPVVLVGTKLDLREDKHYLAD 130
G+D +L FS+ S++N L W E +Y+ P V++G K+D+ E +
Sbjct: 81 GSDCCLLTFSVDDSQSFQN-LSNWKKEFIYYADVKEPESFPFVILGNKIDISERQ----- 134
Query: 131 HPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 172
V+T + + + G Y E S+K NV A F+ A
Sbjct: 135 ------VSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEA 170
>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|B Chain B, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|C Chain C, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|D Chain D, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|E Chain E, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
Length = 171
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 80/181 (44%), Gaps = 42/181 (23%)
Query: 13 TQVTSFLLYVL--SVSGRSS-IWDYIPTVFDNFSANVVA----------EGTTVNLGLWD 59
++ F L +L S G+SS + ++ F F + + + TTV +WD
Sbjct: 3 NKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWD 62
Query: 60 TAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ-HYSPGVPVVLVGTK 118
TAGQE Y+ L P+ YRGA ++ + + + S+ K W+ ELQ SP + + L G K
Sbjct: 63 TAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARA-KNWVKELQRQASPNIVIALSGNK 121
Query: 119 LDL--------REDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFD 170
DL +E + Y D+ L ++E S+KT NV +F
Sbjct: 122 ADLANKRAVDFQEAQSYADDNSLL-------------------FMETSAKTSMNVNEIFM 162
Query: 171 A 171
A
Sbjct: 163 A 163
>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants:
Molecular Basis For Their Inability To Function As
Signal Switch Molecules
pdb|2RGD|A Chain A, Crystal Structure Of H-Rasq61l-Gppnhp
pdb|3OIU|A Chain A, H-Rasq61l With Allosteric Switch In The "on" State
Length = 166
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 75/141 (53%), Gaps = 15/141 (10%)
Query: 31 IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA 90
+ +Y PT+ D++ VV +G T L + DTAG E+Y+ +R R + F+ F++ +
Sbjct: 29 VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGLEEYSAMRDQYMRTGEGFLCVFAINNTK 88
Query: 91 SYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ 148
S+E++ ++ I ++ S VP+VLVG K DL V + Q ++L +
Sbjct: 89 SFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AARTVESRQAQDLARS 136
Query: 149 IGASYYIECSSKTQQNVKAVF 169
G YIE S+KT+Q V+ F
Sbjct: 137 YGIP-YIETSAKTRQGVEDAF 156
>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g
Length = 166
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 75/141 (53%), Gaps = 15/141 (10%)
Query: 31 IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA 90
+ +Y PT+ D++ VV +G T L + DTAG E+Y+ +R R + F+ F++ +
Sbjct: 29 VDEYDPTIEDSYRKQVVIDGETXLLDILDTAGGEEYSAMRDQYMRTGEGFLCVFAINNTK 88
Query: 91 SYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ 148
S+E++ ++ I ++ S VP+VLVG K DL V + Q ++L +
Sbjct: 89 SFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AARTVESRQAQDLARS 136
Query: 149 IGASYYIECSSKTQQNVKAVF 169
G YIE S+KT+Q V+ F
Sbjct: 137 YGIP-YIETSAKTRQGVEDAF 156
>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp
Length = 166
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 75/141 (53%), Gaps = 15/141 (10%)
Query: 31 IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA 90
+ +Y PT+ D++ VV +G T L + DTAG E+Y+ +R R + F+ F++ +
Sbjct: 29 VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGVEEYSAMRDQYMRTGEGFLCVFAINNTK 88
Query: 91 SYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ 148
S+E++ ++ I ++ S VP+VLVG K DL V + Q ++L +
Sbjct: 89 SFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AARTVESRQAQDLARS 136
Query: 149 IGASYYIECSSKTQQNVKAVF 169
G YIE S+KT+Q V+ F
Sbjct: 137 YGIP-YIETSAKTRQGVEDAF 156
>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of
The Ras-specific Nucleotide Exchange Factor Sos
pdb|1XD2|A Chain A, Crystal Structure Of A Ternary Ras:sos:ras*gdp Complex
Length = 166
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 75/141 (53%), Gaps = 15/141 (10%)
Query: 31 IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA 90
+ +Y PT+ D++ VV +G T L + DTAGQE+ + +R R + F+ F++ +
Sbjct: 29 VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEASAMRDQYMRTGEGFLCVFAINNTK 88
Query: 91 SYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ 148
S+E++ ++ I ++ S VP+VLVG K DL V + Q ++L +
Sbjct: 89 SFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AARTVESRQAQDLARS 136
Query: 149 IGASYYIECSSKTQQNVKAVF 169
G YIE S+KT+Q V+ F
Sbjct: 137 YGIP-YIETSAKTRQGVEDAF 156
>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp
pdb|2RGG|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp, Trigonal Crystal
Form
Length = 166
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 75/141 (53%), Gaps = 15/141 (10%)
Query: 31 IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA 90
+ +Y PT+ D++ VV +G T L + DTAG E+Y+ +R R + F+ F++ +
Sbjct: 29 VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGIEEYSAMRDQYMRTGEGFLCVFAINNTK 88
Query: 91 SYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ 148
S+E++ ++ I ++ S VP+VLVG K DL V + Q ++L +
Sbjct: 89 SFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AARTVESRQAQDLARS 136
Query: 149 IGASYYIECSSKTQQNVKAVF 169
G YIE S+KT+Q V+ F
Sbjct: 137 YGIP-YIETSAKTRQGVEDAF 156
>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a
pdb|1R2Q|A Chain A, Crystal Structure Of Human Rab5a Gtpase Domain At 1.05 A
Resolution
Length = 170
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 80/181 (44%), Gaps = 42/181 (23%)
Query: 13 TQVTSFLLYVL--SVSGRSS-IWDYIPTVFDNFSANVVA----------EGTTVNLGLWD 59
++ F L +L S G+SS + ++ F F + + + TTV +WD
Sbjct: 2 NKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWD 61
Query: 60 TAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ-HYSPGVPVVLVGTK 118
TAGQE Y+ L P+ YRGA ++ + + + S+ K W+ ELQ SP + + L G K
Sbjct: 62 TAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARA-KNWVKELQRQASPNIVIALSGNK 120
Query: 119 LDL--------REDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFD 170
DL +E + Y D+ L ++E S+KT NV +F
Sbjct: 121 ADLANKRAVDFQEAQSYADDNSLL-------------------FMETSAKTSMNVNEIFM 161
Query: 171 A 171
A
Sbjct: 162 A 162
>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp
(State 1)
Length = 171
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 75/141 (53%), Gaps = 15/141 (10%)
Query: 31 IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA 90
+ +Y PT+ D++ VV +G T L + DTAG E+Y+ +R R + F+ F++ +
Sbjct: 34 VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGLEEYSAMRDQYMRTGEGFLCVFAINNTK 93
Query: 91 SYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ 148
S+E++ ++ I ++ S VP+VLVG K DL V + Q ++L +
Sbjct: 94 SFEDIHQYREQIKRVKD-SDDVPMVLVGNKCDL-----------AARTVESRQAQDLARS 141
Query: 149 IGASYYIECSSKTQQNVKAVF 169
G YIE S+KT+Q V+ F
Sbjct: 142 YGIP-YIETSAKTRQGVEDAF 161
>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With
Gppnhp
Length = 170
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 80/181 (44%), Gaps = 42/181 (23%)
Query: 13 TQVTSFLLYVLSVS--GRSS-IWDYIPTVFDNFSANVVA----------EGTTVNLGLWD 59
++ F L +L S G+SS + ++ F F + + + TTV +WD
Sbjct: 2 NKICQFKLVLLGESEVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWD 61
Query: 60 TAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ-HYSPGVPVVLVGTK 118
TAGQE Y+ L P+ YRGA ++ + + + S+ K W+ ELQ SP + + L G K
Sbjct: 62 TAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARA-KNWVKELQRQASPNIVIALSGNK 120
Query: 119 LDL--------REDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFD 170
DL +E + Y D+ L ++E S+KT NV +F
Sbjct: 121 ADLANKRAVDFQEAQSYADDNSLL-------------------FMETSAKTSMNVNEIFM 161
Query: 171 A 171
A
Sbjct: 162 A 162
>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With
Gppnhp
Length = 170
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 80/181 (44%), Gaps = 42/181 (23%)
Query: 13 TQVTSFLLYVLSVS--GRSS-IWDYIPTVFDNFSANVVA----------EGTTVNLGLWD 59
++ F L +L S G+SS + ++ F F + + + TTV +WD
Sbjct: 2 NKICQFKLVLLGESKVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWD 61
Query: 60 TAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ-HYSPGVPVVLVGTK 118
TAGQE Y+ L P+ YRGA ++ + + + S+ K W+ ELQ SP + + L G K
Sbjct: 62 TAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARA-KNWVKELQRQASPNIVIALSGNK 120
Query: 119 LDL--------REDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFD 170
DL +E + Y D+ L ++E S+KT NV +F
Sbjct: 121 ADLANKRAVDFQEAQSYADDNSLL-------------------FMETSAKTSMNVNEIFM 161
Query: 171 A 171
A
Sbjct: 162 A 162
>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With
Gppnhp
Length = 170
Score = 68.2 bits (165), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 80/181 (44%), Gaps = 42/181 (23%)
Query: 13 TQVTSFLLYVLSVS--GRSS-IWDYIPTVFDNFSANVVA----------EGTTVNLGLWD 59
++ F L +L S G+SS + ++ F F + + + TTV +WD
Sbjct: 2 NKICQFKLVLLGESRVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWD 61
Query: 60 TAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ-HYSPGVPVVLVGTK 118
TAGQE Y+ L P+ YRGA ++ + + + S+ K W+ ELQ SP + + L G K
Sbjct: 62 TAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARA-KNWVKELQRQASPNIVIALSGNK 120
Query: 119 LDL--------REDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFD 170
DL +E + Y D+ L ++E S+KT NV +F
Sbjct: 121 ADLANKRAVDFQEAQSYADDNSLL-------------------FMETSAKTSMNVNEIFM 161
Query: 171 A 171
A
Sbjct: 162 A 162
>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A
Length = 164
Score = 67.8 bits (164), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 71/138 (51%), Gaps = 14/138 (10%)
Query: 34 YIPTVFDNFSANVVA-EGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
YI T+ +F + +G T+ L +WDTAGQE + + YRGA ++ + + + S+
Sbjct: 28 YISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESF 87
Query: 93 ENVLKKWIPELQHY-SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA 151
NV K+W+ E+ Y S V +LVG K DL K +V TTA+ E +G
Sbjct: 88 NNV-KQWLQEIDRYASENVNKLLVGNKCDLTTKK--------VVDYTTAK--EFADSLGI 136
Query: 152 SYYIECSSKTQQNVKAVF 169
++E S+K NV+ F
Sbjct: 137 P-FLETSAKNATNVEQSF 153
>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp
pdb|1N6K|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp And Aluminum Fluoride
pdb|1N6L|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gtp
Length = 170
Score = 67.8 bits (164), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 80/181 (44%), Gaps = 42/181 (23%)
Query: 13 TQVTSFLLYVLSVS--GRSS-IWDYIPTVFDNFSANVVA----------EGTTVNLGLWD 59
++ F L +L S G+SS + ++ F F + + + TTV +WD
Sbjct: 2 NKICQFKLVLLGESPVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWD 61
Query: 60 TAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ-HYSPGVPVVLVGTK 118
TAGQE Y+ L P+ YRGA ++ + + + S+ K W+ ELQ SP + + L G K
Sbjct: 62 TAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARA-KNWVKELQRQASPNIVIALSGNK 120
Query: 119 LDL--------REDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFD 170
DL +E + Y D+ L ++E S+KT NV +F
Sbjct: 121 ADLANKRAVDFQEAQSYADDNSLL-------------------FMETSAKTSMNVNEIFM 161
Query: 171 A 171
A
Sbjct: 162 A 162
>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp
Length = 191
Score = 67.8 bits (164), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 74/139 (53%), Gaps = 14/139 (10%)
Query: 34 YIPTVFDNFSANVV-AEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
++ TV +F V V L +WDTAGQE Y + YRGA F+L + + + S+
Sbjct: 52 FVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESF 111
Query: 93 ENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA 151
N ++ W +++ YS V+LVG K D+ E++ +VP T +G+ L +Q+G
Sbjct: 112 -NAVQDWATQIKTYSWDNAQVILVGNKCDMEEER--------VVP--TEKGQLLAEQLGF 160
Query: 152 SYYIECSSKTQQNVKAVFD 170
++ E S+K +V+ F+
Sbjct: 161 DFF-EASAKENISVRQAFE 178
>pdb|4FMC|B Chain B, Espg-Rab1 Complex
pdb|4FMC|D Chain D, Espg-Rab1 Complex
pdb|4FMD|B Chain B, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FMD|D Chain D, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FME|B Chain B, Espg-Rab1-Arf6 Complex
pdb|4FME|E Chain E, Espg-Rab1-Arf6 Complex
Length = 171
Score = 67.8 bits (164), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 71/138 (51%), Gaps = 14/138 (10%)
Query: 34 YIPTVFDNFSANVVA-EGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
YI T+ +F + +G T+ L +WDTAGQE + + YRGA ++ + + + S+
Sbjct: 35 YISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESF 94
Query: 93 ENVLKKWIPELQHY-SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA 151
NV K+W+ E+ Y S V +LVG K DL K +V TTA+ E +G
Sbjct: 95 NNV-KQWLQEIDRYASENVNKLLVGNKCDLTTKK--------VVDYTTAK--EFADSLGI 143
Query: 152 SYYIECSSKTQQNVKAVF 169
++E S+K NV+ F
Sbjct: 144 P-FLETSAKNATNVEQSF 160
>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure
pdb|4FMB|D Chain D, Vira-Rab1 Complex Structure
pdb|4FMB|F Chain F, Vira-Rab1 Complex Structure
Length = 171
Score = 67.4 bits (163), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 71/138 (51%), Gaps = 14/138 (10%)
Query: 34 YIPTVFDNFSANVVA-EGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
YI T+ +F + +G T+ L +WDTAGQE + + YRGA ++ + + + S+
Sbjct: 35 YISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESF 94
Query: 93 ENVLKKWIPELQHY-SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA 151
NV K+W+ E+ Y S V +LVG K DL K +V TTA+ E +G
Sbjct: 95 NNV-KQWLQEIDRYASENVNKLLVGNKCDLTTKK--------VVDYTTAK--EFADSLGI 143
Query: 152 SYYIECSSKTQQNVKAVF 169
++E S+K NV+ F
Sbjct: 144 P-FLETSAKNATNVEQSF 160
>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp
pdb|2HEI|B Chain B, Crystal Structure Of Human Rab5b In Complex With Gdp
Length = 179
Score = 67.4 bits (163), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 81/172 (47%), Gaps = 26/172 (15%)
Query: 12 ATQVTSFLLYVL--SVSGRSS-IWDYIPTVFDNFSANVVA----------EGTTVNLGLW 58
A+++ F L +L S G+SS + ++ F + + + + TTV +W
Sbjct: 3 ASKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAAFLTQSVCLDDTTVKFEIW 62
Query: 59 DTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ-HYSPGVPVVLVGT 117
DTAGQE Y+ L P+ YRGA ++ + + ++ ++ K W+ ELQ SP + + L G
Sbjct: 63 DTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARA-KTWVKELQRQASPSIVIALAGN 121
Query: 118 KLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 169
K DL + +V AQ + ++E S+KT NV +F
Sbjct: 122 KADLANKR--------MVEYEEAQAYADDNSL---LFMETSAKTAMNVNDLF 162
>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1YZU|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1Z0I|A Chain A, Gdp-Bound Rab21 Gtpase
pdb|2OT3|B Chain B, Crystal Structure Of Rabex-5 Vps9 Domain In Complex With
Nucleotide Free Rab21
Length = 170
Score = 67.4 bits (163), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 66/121 (54%), Gaps = 13/121 (10%)
Query: 50 GTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SP 108
G VNL +WDTAGQE ++ L P+ YR ++ +L + + S++ V K W+ EL+
Sbjct: 52 GKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKV-KNWVKELRKMLGN 110
Query: 109 GVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAV 168
+ + +VG K+DL +++H V+ + E + +GA +Y S+K + ++ +
Sbjct: 111 EICLCIVGNKIDLEKERH----------VSIQEAESYAESVGAKHY-HTSAKQNKGIEEL 159
Query: 169 F 169
F
Sbjct: 160 F 160
>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp
Analogue
Length = 180
Score = 67.4 bits (163), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 74/140 (52%), Gaps = 14/140 (10%)
Query: 34 YIPTVFDNFSANVV-AEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
+I TV +F V+ +G V L +WDTAGQE + + YR A +L + + ++AS+
Sbjct: 40 FISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASF 99
Query: 93 ENVLKKWIPELQHYSP-GVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA 151
+N+ + W+ E+ Y+ V ++L+G K+D ++ V GE+L K+ G
Sbjct: 100 DNI-QAWLTEIHEYAQHDVALMLLGNKVDSAHER----------VVKREDGEKLAKEYGL 148
Query: 152 SYYIECSSKTQQNVKAVFDA 171
++E S+KT NV F A
Sbjct: 149 P-FMETSAKTGLNVDLAFTA 167
>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium
Botulinum C3 Exoenzyme By Rala Gtpase
Length = 206
Score = 67.4 bits (163), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 70/141 (49%), Gaps = 14/141 (9%)
Query: 31 IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA 90
+ DY PT D++ VV +G V + + DTAGQEDY +R +R + F+ FS+
Sbjct: 40 VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEME 99
Query: 91 SYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ 148
S+ ++ I ++ VP +LVG K DL EDK V V A+ R +
Sbjct: 100 SFAATADFREQILRVKE-DENVPFLLVGNKSDL-EDKRQ-------VSVEEAKN---RAE 147
Query: 149 IGASYYIECSSKTQQNVKAVF 169
Y+E S+KT+ NV VF
Sbjct: 148 QWNVNYVETSAKTRANVDKVF 168
>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In
Complex With The Coiled-Coil Domain Of Lida From
Legionella Pneumophila
Length = 181
Score = 67.4 bits (163), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 71/138 (51%), Gaps = 14/138 (10%)
Query: 34 YIPTVFDNFSANVVA-EGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
YI T+ +F + +G T+ L +WDTAGQE + + YRGA ++ + + + S+
Sbjct: 45 YISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESF 104
Query: 93 ENVLKKWIPELQHY-SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA 151
NV K+W+ E+ Y S V +LVG K DL K +V TTA+ E +G
Sbjct: 105 NNV-KQWLQEIDRYASENVNKLLVGNKCDLTTKK--------VVDYTTAK--EFADSLGI 153
Query: 152 SYYIECSSKTQQNVKAVF 169
++E S+K NV+ F
Sbjct: 154 P-FLETSAKNATNVEQSF 170
>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|B Chain B, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|C Chain C, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|D Chain D, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
Length = 170
Score = 67.4 bits (163), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 66/121 (54%), Gaps = 13/121 (10%)
Query: 50 GTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SP 108
G VNL +WDTAGQE ++ L P+ YR ++ +L + + S++ V K W+ EL+
Sbjct: 52 GKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKV-KNWVKELRKMLGN 110
Query: 109 GVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAV 168
+ + +VG K+DL +++H V+ + E + +GA +Y S+K + ++ +
Sbjct: 111 EICLCIVGNKIDLEKERH----------VSIQEAESYAESVGAKHY-HTSAKQNKGIEEL 159
Query: 169 F 169
F
Sbjct: 160 F 160
>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase
pdb|2F9M|A Chain A, 3d Structure Of Active Human Rab11b Gtpase
Length = 199
Score = 67.4 bits (163), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 62/122 (50%), Gaps = 13/122 (10%)
Query: 49 EGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ-HYS 107
+G T+ +WDTAGQE Y R+ YRGA +L + + +YENV ++W+ EL+ H
Sbjct: 50 DGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELRDHAD 108
Query: 108 PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKA 167
+ ++LVG K DLR H VP A+ + + +IE S+ NV+
Sbjct: 109 SNIVIMLVGNKSDLR--------HLRAVPTDEARAFAEKNNLS---FIETSALDSTNVEE 157
Query: 168 VF 169
F
Sbjct: 158 AF 159
>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp
Length = 191
Score = 67.4 bits (163), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 71/138 (51%), Gaps = 14/138 (10%)
Query: 34 YIPTVFDNFSANVVA-EGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
YI T+ +F + +G T+ L +WDTAGQE + + YRGA ++ + + + S+
Sbjct: 54 YISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESF 113
Query: 93 ENVLKKWIPELQHY-SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA 151
NV K+W+ E+ Y S V +LVG K DL K +V TTA+ E +G
Sbjct: 114 NNV-KQWLQEIDRYASENVNKLLVGNKCDLTTKK--------VVDYTTAK--EFADSLGI 162
Query: 152 SYYIECSSKTQQNVKAVF 169
++E S+K NV+ F
Sbjct: 163 P-FLETSAKNATNVEQSF 179
>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
pdb|1YZT|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
Length = 184
Score = 67.4 bits (163), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 66/121 (54%), Gaps = 13/121 (10%)
Query: 50 GTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SP 108
G VNL +WDTAGQE ++ L P+ YR ++ +L + + S++ V K W+ EL+
Sbjct: 66 GKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKV-KNWVKELRKMLGN 124
Query: 109 GVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAV 168
+ + +VG K+DL +++H V+ + E + +GA +Y S+K + ++ +
Sbjct: 125 EICLCIVGNKIDLEKERH----------VSIQEAESYAESVGAKHY-HTSAKQNKGIEEL 173
Query: 169 F 169
F
Sbjct: 174 F 174
>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
pdb|2A9K|A Chain A, Crystal Structure Of The C3bot-Nad-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
Length = 187
Score = 67.0 bits (162), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 70/141 (49%), Gaps = 14/141 (9%)
Query: 31 IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA 90
+ DY PT D++ VV +G V + + DTAGQEDY +R +R + F+ FS+
Sbjct: 44 VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEME 103
Query: 91 SYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ 148
S+ ++ I ++ VP +LVG K DL EDK V V A+ R +
Sbjct: 104 SFAATADFREQILRVKE-DENVPFLLVGNKSDL-EDKRQ-------VSVEEAKN---RAE 151
Query: 149 IGASYYIECSSKTQQNVKAVF 169
Y+E S+KT+ NV VF
Sbjct: 152 QWNVNYVETSAKTRANVDKVF 172
>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
pdb|1UAD|B Chain B, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
Length = 175
Score = 67.0 bits (162), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 70/141 (49%), Gaps = 14/141 (9%)
Query: 31 IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA 90
+ DY PT D++ VV +G V + + DTAGQEDY +R +R + F+ FS+
Sbjct: 32 VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEME 91
Query: 91 SYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ 148
S+ ++ I ++ VP +LVG K DL EDK V V A+ R +
Sbjct: 92 SFAATADFREQILRVKE-DENVPFLLVGNKSDL-EDKRQ-------VSVEEAKN---RAE 139
Query: 149 IGASYYIECSSKTQQNVKAVF 169
Y+E S+KT+ NV VF
Sbjct: 140 QWNVNYVETSAKTRANVDKVF 160
>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With
The Coiled- Coil Domain Of Lida From Legionella
Pneumophila
Length = 196
Score = 67.0 bits (162), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 71/138 (51%), Gaps = 14/138 (10%)
Query: 34 YIPTVFDNFSANVVA-EGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
YI T+ +F + +G T+ L +WDTAGQE + + YRGA ++ + + + S+
Sbjct: 45 YISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESF 104
Query: 93 ENVLKKWIPELQHY-SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA 151
NV K+W+ E+ Y S V +LVG K DL K +V TTA+ E +G
Sbjct: 105 NNV-KQWLQEIDRYASENVNKLLVGNKCDLTTKK--------VVDYTTAK--EFADSLGI 153
Query: 152 SYYIECSSKTQQNVKAVF 169
++E S+K NV+ F
Sbjct: 154 P-FLETSAKNATNVEQSF 170
>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1
(Gtpase Domain) Complex
Length = 175
Score = 67.0 bits (162), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 71/138 (51%), Gaps = 14/138 (10%)
Query: 34 YIPTVFDNFSANVVA-EGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
YI T+ +F + +G T+ L +WDTAGQE + + YRGA ++ + + + S+
Sbjct: 37 YISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESF 96
Query: 93 ENVLKKWIPELQHY-SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA 151
NV K+W+ E+ Y S V +LVG K DL K +V TTA+ E +G
Sbjct: 97 NNV-KQWLQEIDRYASENVNKLLVGIKCDLTTKK--------VVDYTTAK--EFADSLGI 145
Query: 152 SYYIECSSKTQQNVKAVF 169
++E S+K NV+ F
Sbjct: 146 P-FLETSAKNATNVEQSF 162
>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1
pdb|3L0I|D Chain D, Complex Structure Of Sidm/drra With The Wild Type Rab1
Length = 199
Score = 67.0 bits (162), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 71/138 (51%), Gaps = 14/138 (10%)
Query: 34 YIPTVFDNFSANVVA-EGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
YI T+ +F + +G T+ L +WDTAGQE + + YRGA ++ + + + S+
Sbjct: 62 YISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESF 121
Query: 93 ENVLKKWIPELQHY-SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA 151
NV K+W+ E+ Y S V +LVG K DL K +V TTA+ E +G
Sbjct: 122 NNV-KQWLQEIDRYASENVNKLLVGNKCDLTTKK--------VVDYTTAK--EFADSLGI 170
Query: 152 SYYIECSSKTQQNVKAVF 169
++E S+K NV+ F
Sbjct: 171 P-FLETSAKNATNVEQSF 187
>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c
(Mouse)
Length = 164
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 63/135 (46%), Gaps = 29/135 (21%)
Query: 46 VVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ- 104
V + TTV +WDTAGQE Y+ L P+ YRGA ++ + + + ++ K W+ ELQ
Sbjct: 45 VCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARA-KNWVKELQR 103
Query: 105 HYSPGVPVVLVGTKLDL--------REDKHYLADHPGLVPVTTAQGEELRKQIGASYYIE 156
SP + + L G K DL +E + Y D+ L ++E
Sbjct: 104 QASPNIVIALAGNKADLASKRAVEFQEAQAYADDNSLL-------------------FME 144
Query: 157 CSSKTQQNVKAVFDA 171
S+KT NV +F A
Sbjct: 145 TSAKTAMNVNEIFMA 159
>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase
Length = 184
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 66/126 (52%), Gaps = 13/126 (10%)
Query: 45 NVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ 104
++ +G T+ +WDTAGQE Y + YRGA +L + + +YENV ++W+ EL+
Sbjct: 61 SIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELR 119
Query: 105 -HYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ 163
H + ++LVG K DLR H VP T + ++ G S +IE S+
Sbjct: 120 DHADSNIVIMLVGNKSDLR--------HLRAVP--TDEARAFAEKNGLS-FIETSALDST 168
Query: 164 NVKAVF 169
NV+A F
Sbjct: 169 NVEAAF 174
>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase
Length = 166
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 63/135 (46%), Gaps = 29/135 (21%)
Query: 46 VVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ- 104
V + TTV +WDTAGQE Y+ L P+ YRGA ++ + + + ++ K W+ ELQ
Sbjct: 47 VCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARA-KNWVKELQR 105
Query: 105 HYSPGVPVVLVGTKLDL--------REDKHYLADHPGLVPVTTAQGEELRKQIGASYYIE 156
SP + + L G K DL +E + Y D+ L ++E
Sbjct: 106 QASPNIVIALAGNKADLASKRAVEFQEAQAYADDNSLL-------------------FME 146
Query: 157 CSSKTQQNVKAVFDA 171
S+KT NV +F A
Sbjct: 147 TSAKTAMNVNEIFMA 161
>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Y|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
Length = 168
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 70/141 (49%), Gaps = 14/141 (9%)
Query: 31 IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA 90
+ DY PT D++ VV +G V + + DTAGQEDY +R +R + F+ FS+
Sbjct: 30 VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEME 89
Query: 91 SYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ 148
S+ ++ I ++ VP +LVG K DL EDK V V A+ +
Sbjct: 90 SFAATADFREQILRVKE-DENVPFLLVGNKSDL-EDKRQ-------VSVEEAKNRADQWN 140
Query: 149 IGASYYIECSSKTQQNVKAVF 169
+ Y+E S+KT+ NV VF
Sbjct: 141 VN---YVETSAKTRANVDKVF 158
>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|B Chain B, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|C Chain C, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|D Chain D, Crystal Structure Of Rab5-Gdp Complex
Length = 171
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 78/181 (43%), Gaps = 42/181 (23%)
Query: 13 TQVTSFLLYVL--SVSGRSS-IWDYIPTVFDNFSANVVA----------EGTTVNLGLWD 59
++ F L +L S G+SS + ++ F F + + + TTV +WD
Sbjct: 3 NKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWD 62
Query: 60 TAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ-HYSPGVPVVLVGTK 118
TAGQE Y+ L P YRGA ++ + + + S+ K W+ ELQ SP + + L G K
Sbjct: 63 TAGQERYHSLAPXYYRGAQAAIVVYDITNEESFARA-KNWVKELQRQASPNIVIALSGNK 121
Query: 119 LDL--------REDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFD 170
DL +E + Y D+ L + E S+KT NV +F
Sbjct: 122 ADLANKRAVDFQEAQSYADDNSLL-------------------FXETSAKTSXNVNEIFX 162
Query: 171 A 171
A
Sbjct: 163 A 163
>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
pdb|1OIV|B Chain B, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
Length = 191
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 66/126 (52%), Gaps = 13/126 (10%)
Query: 45 NVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ 104
++ +G T+ +WDTAGQE Y + YRGA +L + + +YENV ++W+ EL+
Sbjct: 70 SIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELR 128
Query: 105 -HYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ 163
H + ++LVG K DLR H VP T + ++ G S +IE S+
Sbjct: 129 DHADSNIVIMLVGNKSDLR--------HLRAVP--TDEARAFAEKNGLS-FIETSALDST 177
Query: 164 NVKAVF 169
NV+A F
Sbjct: 178 NVEAAF 183
>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi
Length = 213
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 67/138 (48%), Gaps = 15/138 (10%)
Query: 34 YIPTVFDNFSANVV-AEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
+I T+ +F V G V L LWDTAGQE + + YRGA +L + + ++
Sbjct: 49 FITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTF 108
Query: 93 ENVLKKWIPEL-QHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA 151
N+ K+W + +H + ++LVG K D+ VT QGE L K++G
Sbjct: 109 TNI-KQWFKTVNEHANDEAQLLLVGNKSDMETR-----------VVTADQGEALAKELGI 156
Query: 152 SYYIECSSKTQQNVKAVF 169
+IE S+K NV +F
Sbjct: 157 P-FIESSAKNDDNVNEIF 173
>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution
Length = 169
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 71/139 (51%), Gaps = 14/139 (10%)
Query: 34 YIPTVFDNFSANVVAEGTT-VNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
++ TV +F + + L +WDTAGQE Y + YRGA F+L + + + S+
Sbjct: 34 FVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESF 93
Query: 93 ENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA 151
N ++ W +++ YS V+LVG K D+ +++ V++ +G +L +G
Sbjct: 94 -NAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDER----------VVSSERGRQLADHLGF 142
Query: 152 SYYIECSSKTQQNVKAVFD 170
++ E S+K NVK F+
Sbjct: 143 EFF-EASAKDNINVKQTFE 160
>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef
Domain, And Phosphate Complex
Length = 174
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 67/138 (48%), Gaps = 15/138 (10%)
Query: 34 YIPTVFDNFSANVV-AEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
+I T+ +F V G V L LWDTAGQE + + YRGA +L + + ++
Sbjct: 36 FITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTF 95
Query: 93 ENVLKKWIPEL-QHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA 151
N+ K+W + +H + ++LVG K D+ VT QGE L K++G
Sbjct: 96 TNI-KQWFKTVNEHANDEAQLLLVGNKSDMETR-----------VVTADQGEALAKELGI 143
Query: 152 SYYIECSSKTQQNVKAVF 169
+IE S+K NV +F
Sbjct: 144 P-FIESSAKNDDNVNEIF 160
>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
pdb|1G17|B Chain B, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
Length = 170
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 67/138 (48%), Gaps = 15/138 (10%)
Query: 34 YIPTVFDNFSANVV-AEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
+I T+ +F V G V L +WDTAGQE + + YRGA +L + + ++
Sbjct: 32 FITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTF 91
Query: 93 ENVLKKWIPEL-QHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA 151
N+ K+W + +H + ++LVG K D+ VT QGE L K++G
Sbjct: 92 TNI-KQWFKTVNEHANDEAQLLLVGNKSDME-----------TRVVTADQGEALAKELGI 139
Query: 152 SYYIECSSKTQQNVKAVF 169
+IE S+K NV +F
Sbjct: 140 P-FIESSAKNDDNVNEIF 156
>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue
Length = 201
Score = 65.1 bits (157), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 61/121 (50%), Gaps = 13/121 (10%)
Query: 50 GTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SP 108
G V L +WDTAGQE + + YR A+ +L + + S+ L +W+ E++ Y S
Sbjct: 72 GEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESF-RCLPEWLREIEQYASN 130
Query: 109 GVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAV 168
V VLVG K+DL E + V+ + EE + YY+E S+K NV+ +
Sbjct: 131 KVITVLVGNKIDLAERRE----------VSQQRAEEF-SEAQDMYYLETSAKESDNVEKL 179
Query: 169 F 169
F
Sbjct: 180 F 180
>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Inactive Gdp-Bound Form
pdb|2FFQ|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Active Gtpgs-Bound Form
pdb|2E9S|A Chain A, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|B Chain B, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|C Chain C, Human Neuronal Rab6b In Three Intermediate Forms
Length = 171
Score = 65.1 bits (157), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 67/131 (51%), Gaps = 13/131 (9%)
Query: 40 DNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKW 99
D S + E TV L LWDTAGQE + L P R + V V+ + + + S++ KW
Sbjct: 38 DFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNLNSFQQT-SKW 96
Query: 100 IPELQ-HYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECS 158
I +++ V ++LVG K DL + + +T +GE+ K++ +IE S
Sbjct: 97 IDDVRTERGSDVIIMLVGNKTDLADKRQ----------ITIEEGEQRAKELSV-MFIETS 145
Query: 159 SKTQQNVKAVF 169
+KT NVK +F
Sbjct: 146 AKTGYNVKQLF 156
>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State
Length = 196
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 46/142 (32%), Positives = 74/142 (52%), Gaps = 16/142 (11%)
Query: 31 IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA 90
IW+Y PT+ + + V++ + DTAGQED + R R + FVL + + R
Sbjct: 54 IWEYDPTLESTYRHQATIDDEVVSMEILDTAGQEDTIQ-REGHMRWGEGFVLVYDITDRG 112
Query: 91 SYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ 148
S+E V LK + E++ V ++LVG K DL DH V+T +GE+L +
Sbjct: 113 SFEEVLPLKNILDEIKK-PKNVTLILVGNKADL--------DHSR--QVSTEEGEKLATE 161
Query: 149 IGASYYIECSSKT-QQNVKAVF 169
+ ++Y ECS+ T + N+ +F
Sbjct: 162 LACAFY-ECSACTGEGNITEIF 182
>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab
Gtpase Sec4p
Length = 170
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 66/138 (47%), Gaps = 15/138 (10%)
Query: 34 YIPTVFDNFSANVV-AEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
+I T+ +F V G V L LWDTAGQE + + YRGA +L + + ++
Sbjct: 32 FITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAXGIILVYDVTDERTF 91
Query: 93 ENVLKKWIPEL-QHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA 151
N+ K+W + +H + ++LVG K D VT QGE L K++G
Sbjct: 92 TNI-KQWFKTVNEHANDEAQLLLVGNKSDXE-----------TRVVTADQGEALAKELGI 139
Query: 152 SYYIECSSKTQQNVKAVF 169
+IE S+K NV +F
Sbjct: 140 P-FIESSAKNDDNVNEIF 156
>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
pdb|3MJH|C Chain C, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
Length = 168
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 79/180 (43%), Gaps = 42/180 (23%)
Query: 14 QVTSFLLYVL--SVSGRSS-IWDYIPTVFDNFSANVVA----------EGTTVNLGLWDT 60
++ F L +L S G+SS + ++ F F + + + TTV +WDT
Sbjct: 2 KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDT 61
Query: 61 AGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ-HYSPGVPVVLVGTKL 119
AG E Y+ L P+ YRGA ++ + + + S+ K W+ ELQ SP + + L G K
Sbjct: 62 AGLERYHSLAPMYYRGAQAAIVVYDITNEESFARA-KNWVKELQRQASPNIVIALSGNKA 120
Query: 120 DL--------REDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDA 171
DL +E + Y D+ L ++E S+KT NV +F A
Sbjct: 121 DLANKRAVDFQEAQSYADDNSLL-------------------FMETSAKTSMNVNEIFMA 161
>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp
pdb|1G16|B Chain B, Crystal Structure Of Sec4-Gdp
pdb|1G16|C Chain C, Crystal Structure Of Sec4-Gdp
pdb|1G16|D Chain D, Crystal Structure Of Sec4-Gdp
Length = 170
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 66/138 (47%), Gaps = 15/138 (10%)
Query: 34 YIPTVFDNFSANVV-AEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
+I T+ +F V G V L +WDTAGQE + + YRGA +L + + ++
Sbjct: 32 FITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAXGIILVYDITDERTF 91
Query: 93 ENVLKKWIPEL-QHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA 151
N+ K+W + +H + ++LVG K D VT QGE L K++G
Sbjct: 92 TNI-KQWFKTVNEHANDEAQLLLVGNKSDXE-----------TRVVTADQGEALAKELGI 139
Query: 152 SYYIECSSKTQQNVKAVF 169
+IE S+K NV +F
Sbjct: 140 P-FIESSAKNDDNVNEIF 156
>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp
Analogue
Length = 192
Score = 64.3 bits (155), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 43/136 (31%), Positives = 72/136 (52%), Gaps = 14/136 (10%)
Query: 36 PTVFDNFSANVVAEGTTVNLGL-WDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYEN 94
PT+ +F V G ++ L WDTAGQE ++ L P+ YRG+ V+ + + + S+
Sbjct: 54 PTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSF-Y 112
Query: 95 VLKKWIPELQHYSP-GVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASY 153
LKKW+ EL+ + P + + + G K DL + + VP+ A+ E + IGA
Sbjct: 113 TLKKWVKELKEHGPENIVMAIAGNKCDLSDIRE--------VPLKDAK--EYAESIGA-I 161
Query: 154 YIECSSKTQQNVKAVF 169
+E S+K N++ +F
Sbjct: 162 VVETSAKNAINIEELF 177
>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|B Chain B, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|C Chain C, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
Length = 172
Score = 63.9 bits (154), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 65/126 (51%), Gaps = 13/126 (10%)
Query: 45 NVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ 104
++ +G T+ +WDTAG E Y + YRGA +L + + +YENV ++W+ EL+
Sbjct: 49 SIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELR 107
Query: 105 -HYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ 163
H + ++LVG K DLR H VP T + ++ G S +IE S+
Sbjct: 108 DHADSNIVIMLVGNKSDLR--------HLRAVP--TDEARAFAEKNGLS-FIETSALDST 156
Query: 164 NVKAVF 169
NV+A F
Sbjct: 157 NVEAAF 162
>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC3|C Chain C, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|A Chain A, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|C Chain C, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
Length = 175
Score = 63.9 bits (154), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 47/141 (33%), Positives = 69/141 (48%), Gaps = 14/141 (9%)
Query: 31 IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA 90
+ DY PT D++ VV +G V + + DTAG EDY +R +R + F+ FS+
Sbjct: 32 VEDYEPTKADSYRKKVVLDGEEVQIDILDTAGLEDYAAIRDNYFRSGEGFLCVFSITEME 91
Query: 91 SYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ 148
S+ ++ I ++ VP +LVG K DL EDK V V A+ R +
Sbjct: 92 SFAATADFREQILRVKE-DENVPFLLVGNKSDL-EDKRQ-------VSVEEAKN---RAE 139
Query: 149 IGASYYIECSSKTQQNVKAVF 169
Y+E S+KT+ NV VF
Sbjct: 140 QWNVNYVETSAKTRANVDKVF 160
>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp
Length = 189
Score = 63.5 bits (153), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 70/139 (50%), Gaps = 14/139 (10%)
Query: 34 YIPTVFDNFSANVV-AEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
++ TV +F V + L +WDTAGQE Y + YRGA F+L + + ++ S+
Sbjct: 51 FVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESF 110
Query: 93 ENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA 151
V + W +++ YS V+LVG K DL +++ +VP G L +G
Sbjct: 111 AAV-QDWATQIKTYSWDNAQVILVGNKCDLEDER--------VVP--AEDGRRLADDLGF 159
Query: 152 SYYIECSSKTQQNVKAVFD 170
++ E S+K NVK VF+
Sbjct: 160 EFF-EASAKENINVKQVFE 177
>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp
pdb|2F7S|B Chain B, The Crystal Structure Of Human Rab27b Bound To Gdp
Length = 217
Score = 63.2 bits (152), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 47/119 (39%), Positives = 61/119 (51%), Gaps = 15/119 (12%)
Query: 53 VNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ--HYSPGV 110
V+L LWDTAGQE + L +R A F+L F L S+ S+ NV + W+ +LQ Y
Sbjct: 84 VHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNV-RNWMSQLQANAYCENP 142
Query: 111 PVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNV-KAV 168
+VL+G K DL P V Q EL + G Y+ E S+ T QNV KAV
Sbjct: 143 DIVLIGNKADL----------PDQREVNERQARELADKYGIPYF-ETSAATGQNVEKAV 190
>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
pdb|2D7C|B Chain B, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
Length = 167
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 64/126 (50%), Gaps = 13/126 (10%)
Query: 45 NVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ 104
++ +G T+ +WDTAG E Y + YRGA +L + + +YENV ++W+ EL+
Sbjct: 46 SIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELR 104
Query: 105 -HYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ 163
H + + LVG K DLR H VP T + ++ G S +IE S+
Sbjct: 105 DHADSNIVIXLVGNKSDLR--------HLRAVP--TDEARAFAEKNGLS-FIETSALDST 153
Query: 164 NVKAVF 169
NV+A F
Sbjct: 154 NVEAAF 159
>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZD|B Chain B, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZH|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Family
Interacting Protein 2
Length = 173
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 64/126 (50%), Gaps = 13/126 (10%)
Query: 45 NVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ 104
++ +G T+ +WDTAG E Y + YRGA +L + + +YENV ++W+ EL+
Sbjct: 52 SIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELR 110
Query: 105 -HYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ 163
H + + LVG K DLR H VP T + ++ G S +IE S+
Sbjct: 111 DHADSNIVIXLVGNKSDLR--------HLRAVP--TDEARAFAEKNGLS-FIETSALDST 159
Query: 164 NVKAVF 169
NV+A F
Sbjct: 160 NVEAAF 165
>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase
pdb|1Z0D|C Chain C, Gdp-bound Rab5c Gtpase
Length = 167
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 63/139 (45%), Gaps = 29/139 (20%)
Query: 42 FSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIP 101
+ V + TTV +WDTAG E Y+ L P+ YRGA ++ + + + ++ K W+
Sbjct: 43 LTQTVCLDDTTVKFEIWDTAGLERYHSLAPMYYRGAQAAIVVYDITNTDTFARA-KNWVK 101
Query: 102 ELQ-HYSPGVPVVLVGTKLDL--------REDKHYLADHPGLVPVTTAQGEELRKQIGAS 152
ELQ SP + + L G K DL +E + Y D+ L
Sbjct: 102 ELQRQASPNIVIALAGNKADLASKRAVEFQEAQAYADDNSLL------------------ 143
Query: 153 YYIECSSKTQQNVKAVFDA 171
++E S+KT NV +F A
Sbjct: 144 -FMETSAKTAMNVNEIFMA 161
>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex
With Gtpgammas
pdb|1OIX|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp And Pi
Length = 191
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 65/126 (51%), Gaps = 13/126 (10%)
Query: 45 NVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ 104
++ +G T+ +WDTAG E Y + YRGA +L + + +YENV ++W+ EL+
Sbjct: 70 SIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENV-ERWLKELR 128
Query: 105 -HYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ 163
H + ++LVG K DLR H VP T + ++ G S +IE S+
Sbjct: 129 DHADSNIVIMLVGNKSDLR--------HLRAVP--TDEARAFAEKNGLS-FIETSALDST 177
Query: 164 NVKAVF 169
NV+A F
Sbjct: 178 NVEAAF 183
>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
pdb|2Y8E|B Chain B, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
Length = 179
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 65/131 (49%), Gaps = 13/131 (9%)
Query: 40 DNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKW 99
D S + E TV L LWDTAGQE + L P R + V V+ + + + S+ KW
Sbjct: 50 DFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQT-SKW 108
Query: 100 IPELQ-HYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECS 158
I +++ V ++LVG K DL + + V+T +GE K++ +IE S
Sbjct: 109 IDDVRTERGSDVIIMLVGNKTDLSDKRQ----------VSTEEGERKAKELNV-MFIETS 157
Query: 159 SKTQQNVKAVF 169
+K NVK +F
Sbjct: 158 AKAGYNVKQLF 168
>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1
Length = 169
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/166 (27%), Positives = 82/166 (49%), Gaps = 14/166 (8%)
Query: 6 KLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED 65
KL L + V L V V G + Y PT+ D++ V + L + DTAG E
Sbjct: 7 KLVVLGSVGVGKSALTVQFVQG-IFVEKYDPTIEDSYRKQVEVDAQQCMLEILDTAGTEQ 65
Query: 66 YNRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLDLRE 123
+ +R L + F L +S+ +++++ ++ L++ I ++ + VP++LVG K DL +
Sbjct: 66 FTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKD-TDDVPMILVGNKCDLED 124
Query: 124 DKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 169
++ V QG+ L +Q ++E S+K++ NV +F
Sbjct: 125 ER----------VVGKEQGQNLARQWNNCAFLESSAKSKINVNEIF 160
>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|C Chain C, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|E Chain E, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|G Chain G, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3TNF|A Chain A, Lida From Legionella In Complex With Active Rab8a
Length = 174
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 70/138 (50%), Gaps = 14/138 (10%)
Query: 34 YIPTVFDNFSANVVA-EGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
+I T+ +F + +G + L +WDTAGQE + + YRGA +L + + + S+
Sbjct: 35 FISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSF 94
Query: 93 ENVLKKWIPEL-QHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA 151
+N+ + WI + +H S V +++G K D+ + + V+ +GE+L G
Sbjct: 95 DNI-RNWIRNIEEHASADVEKMILGNKCDVNDKRQ----------VSKERGEKLALDYGI 143
Query: 152 SYYIECSSKTQQNVKAVF 169
++E S+K NV+ F
Sbjct: 144 K-FMETSAKANINVENAF 160
>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex
pdb|3CF6|R Chain R, Structure Of Epac2 In Complex With Cyclic-Amp And Rap
Length = 167
Score = 62.8 bits (151), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 72/138 (52%), Gaps = 13/138 (9%)
Query: 34 YIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYE 93
Y PT+ D++ V + L + DTAG E + +R L + F L +S+ +++++
Sbjct: 32 YDPTIEDSYRKQVEVDAQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFN 91
Query: 94 NV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA 151
++ L++ I ++ + VP++LVG K DL +++ V QG+ L +Q
Sbjct: 92 DLQDLREQILRVKD-TDDVPMILVGNKCDLEDER----------VVGKEQGQNLARQWNN 140
Query: 152 SYYIECSSKTQQNVKAVF 169
++E S+K++ NV +F
Sbjct: 141 CAFLESSAKSKINVNEIF 158
>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4
pdb|2FU5|D Chain D, Structure Of Rab8 In Complex With Mss4
Length = 183
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 70/138 (50%), Gaps = 14/138 (10%)
Query: 34 YIPTVFDNFSANVVA-EGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
+I T+ +F + +G + L +WDTAGQE + + YRGA +L + + + S+
Sbjct: 37 FISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSF 96
Query: 93 ENVLKKWIPEL-QHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA 151
+N+ + WI + +H S V +++G K D+ + + V+ +GE+L G
Sbjct: 97 DNI-RNWIRNIEEHASADVEKMILGNKCDVNDKRQ----------VSKERGEKLALDYGI 145
Query: 152 SYYIECSSKTQQNVKAVF 169
++E S+K NV+ F
Sbjct: 146 K-FMETSAKANINVENAF 162
>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras,
In The Gdp- Bound State
Length = 181
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 67/144 (46%), Gaps = 18/144 (12%)
Query: 31 IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA 90
+ DY PT+ D+++ +G L + DTAGQE++ +R R F+L F++ R
Sbjct: 35 VSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQ 94
Query: 91 SYENVLKKWIPELQ-HYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI 149
S+ V K + L+ PVVLVG K DL + VP + A
Sbjct: 95 SFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQRQ--------VPRSEASA------F 140
Query: 150 GASY---YIECSSKTQQNVKAVFD 170
GAS+ Y E S+K + NV F+
Sbjct: 141 GASHHVAYFEASAKLRLNVDEAFE 164
>pdb|4FMC|F Chain F, Espg-Rab1 Complex
Length = 117
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 51/90 (56%), Gaps = 3/90 (3%)
Query: 34 YIPTVFDNFSANVVA-EGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
YI T+ +F + +G T+ L +WDTAGQE + + YRGA ++ + + + S+
Sbjct: 27 YISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESF 86
Query: 93 ENVLKKWIPELQHY-SPGVPVVLVGTKLDL 121
NV K+W+ E+ Y S V +LVG K DL
Sbjct: 87 NNV-KQWLQEIDRYASENVNKLLVGNKCDL 115
>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex
Length = 206
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 54/95 (56%), Gaps = 3/95 (3%)
Query: 33 DYIPTVFDNFSANVVA-EGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRAS 91
DYI T+ +F V +G TV L +WDTAGQE + + YRG+ ++ + + + S
Sbjct: 36 DYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQES 95
Query: 92 YENVLKKWIPELQHYSPG-VPVVLVGTKLDLREDK 125
+ N +K W+ E+ Y+ V +LVG K DL++ +
Sbjct: 96 F-NGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKR 129
>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e)
Complexed With Gppnhp And The Ras-Binding-Domain Of
Human C-Raf1, Residues 51-131
pdb|3KUC|A Chain A, Complex Of Rap1a(E30dK31E)GDP WITH RAFRBD(A85KN71R)
Length = 167
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 73/139 (52%), Gaps = 13/139 (9%)
Query: 33 DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
+Y PT+ D++ V + L + DTAG E + +R L + F L +S+ +++++
Sbjct: 31 EYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTF 90
Query: 93 ENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG 150
++ L++ I ++ + VP++LVG K DL +++ V QG+ L +Q
Sbjct: 91 NDLQDLREQILRVKD-TEDVPMILVGNKCDLEDER----------VVGKEQGQNLARQWC 139
Query: 151 ASYYIECSSKTQQNVKAVF 169
++E S+K++ NV +F
Sbjct: 140 NCAFLESSAKSKINVNEIF 158
>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With
Prenylated Ypt1 Gtpase
pdb|3CUE|F Chain F, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|L Chain L, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|R Chain R, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|X Chain X, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 206
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 54/95 (56%), Gaps = 3/95 (3%)
Query: 33 DYIPTVFDNFSANVVA-EGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRAS 91
DYI T+ +F V +G TV L +WDTAGQE + + YRG+ ++ + + + S
Sbjct: 36 DYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQES 95
Query: 92 YENVLKKWIPELQHYSPG-VPVVLVGTKLDLREDK 125
+ N +K W+ E+ Y+ V +LVG K DL++ +
Sbjct: 96 F-NGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKR 129
>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IF0|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 200
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 59/116 (50%), Gaps = 14/116 (12%)
Query: 53 VNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ--HYSPGV 110
V+L LWDTAG E + L +R A F+L F L S+ S+ NV + W+ +LQ Y
Sbjct: 70 VHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNV-RNWMSQLQANAYCENP 128
Query: 111 PVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVK 166
+VL+G K DL P V Q EL ++ G Y+ E S+ T QNV+
Sbjct: 129 DIVLIGNKADL----------PDQREVNERQARELAEKYGIPYF-ETSAATGQNVE 173
>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras-
Binding-Domain Of C-Raf1 Kinase (Rafrbd)
Length = 167
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 72/138 (52%), Gaps = 13/138 (9%)
Query: 34 YIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYE 93
Y PT+ D++ V + L + DTAG E + +R L + F L +S+ +++++
Sbjct: 32 YDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFN 91
Query: 94 NV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA 151
++ L++ I ++ + VP++LVG K DL +++ V QG+ L +Q
Sbjct: 92 DLQDLREQILRVKD-TEDVPMILVGNKCDLEDER----------VVGKEQGQNLARQWCN 140
Query: 152 SYYIECSSKTQQNVKAVF 169
++E S+K++ NV +F
Sbjct: 141 CAFLESSAKSKINVNEIF 158
>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
pdb|2IEY|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
Length = 195
Score = 60.8 bits (146), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 58/116 (50%), Gaps = 14/116 (12%)
Query: 53 VNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ--HYSPGV 110
V+L LWDTAG E + L +R A F+L F L S+ S+ NV + W +LQ Y
Sbjct: 70 VHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNV-RNWXSQLQANAYCENP 128
Query: 111 PVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVK 166
+VL+G K DL P V Q EL ++ G Y+ E S+ T QNV+
Sbjct: 129 DIVLIGNKADL----------PDQREVNERQARELAEKYGIPYF-ETSAATGQNVE 173
>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase
Length = 185
Score = 60.8 bits (146), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 54/95 (56%), Gaps = 3/95 (3%)
Query: 33 DYIPTVFDNFSANVVA-EGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRAS 91
DYI T+ +F V +G TV L +WDTAGQE + + YRG+ ++ + + + S
Sbjct: 49 DYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQES 108
Query: 92 YENVLKKWIPELQHYSPG-VPVVLVGTKLDLREDK 125
+ N +K W+ E+ Y+ V +LVG K DL++ +
Sbjct: 109 F-NGVKMWLQEIDRYATSTVLKLLVGNKCDLKDKR 142
>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|B Chain B, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|C Chain C, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|D Chain D, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
Length = 162
Score = 60.8 bits (146), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 65/131 (49%), Gaps = 13/131 (9%)
Query: 40 DNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKW 99
D S + E TV L LWDTAGQE + L P R + V V+ + + + S++ KW
Sbjct: 37 DFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQT-TKW 95
Query: 100 IPELQ-HYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECS 158
I +++ V ++LVG K DL + + V+ +GE K++ +IE S
Sbjct: 96 IDDVRTERGSDVIIMLVGNKTDLADKRQ----------VSIEEGERKAKELNV-MFIETS 144
Query: 159 SKTQQNVKAVF 169
+K NVK +F
Sbjct: 145 AKAGYNVKQLF 155
>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|H Chain H, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|I Chain I, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 220
Score = 60.8 bits (146), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 59/116 (50%), Gaps = 14/116 (12%)
Query: 53 VNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ--HYSPGV 110
V+L LWDTAG E + L +R A F+L F L S+ S+ NV + W+ +LQ Y
Sbjct: 70 VHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNV-RNWMSQLQANAYCENP 128
Query: 111 PVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVK 166
+VL+G K DL P V Q EL ++ G Y+ E S+ T QNV+
Sbjct: 129 DIVLIGNKADL----------PDQREVNERQARELAEKYGIPYF-ETSAATGQNVE 173
>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b
Length = 191
Score = 60.8 bits (146), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 67/135 (49%), Gaps = 14/135 (10%)
Query: 37 TVFDNFSANVV-AEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV 95
T+ F A +V +G + L +WDTAGQE + + YRGA +L + + R ++ N
Sbjct: 53 TIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETF-NH 111
Query: 96 LKKWIPEL-QHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYY 154
L W+ + QH S + ++L+G K DL + V +GE ++ G +
Sbjct: 112 LTSWLEDARQHSSSNMVIMLIGNKSDLESRR----------DVKREEGEAFAREHGL-IF 160
Query: 155 IECSSKTQQNVKAVF 169
+E S+KT NV+ F
Sbjct: 161 METSAKTACNVEEAF 175
>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
pdb|2ZET|B Chain B, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
Length = 203
Score = 60.8 bits (146), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 43/116 (37%), Positives = 58/116 (50%), Gaps = 14/116 (12%)
Query: 53 VNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ--HYSPGV 110
V+L LWDTAG E + L +R A F+L F L S+ S+ NV + W +LQ Y
Sbjct: 70 VHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNV-RNWXSQLQANAYCENP 128
Query: 111 PVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVK 166
+VL+G K DL P V Q EL ++ G Y+ E S+ T QNV+
Sbjct: 129 DIVLIGNKADL----------PDQREVNERQARELAEKYGIPYF-ETSAATGQNVE 173
>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group
pdb|1Z2A|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In P2(1)2(1)2(1) Space
Group
Length = 168
Score = 60.5 bits (145), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 61/138 (44%), Gaps = 13/138 (9%)
Query: 33 DYIPTV-FDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRAS 91
DY T+ D + V L LWDTAGQE+++ + YRGA VL FS R S
Sbjct: 33 DYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRES 92
Query: 92 YENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA 151
+E + W ++ +P LV K+DL +D + + E L K++
Sbjct: 93 FE-AISSWREKVVAEVGDIPTALVQNKIDLLDDS----------CIKNEEAEGLAKRLKL 141
Query: 152 SYYIECSSKTQQNVKAVF 169
+Y S K NV VF
Sbjct: 142 RFY-RTSVKEDLNVSEVF 158
>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
pdb|3TW8|D Chain D, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
Length = 181
Score = 60.5 bits (145), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 63/138 (45%), Gaps = 13/138 (9%)
Query: 34 YIPTVFDNFSANVVA-EGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
YI T+ +F V G V L +WDTAGQE + + YRG ++ + + S S+
Sbjct: 38 YITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESF 97
Query: 93 ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGAS 152
NV K+W+ E+ V +LVG K D P V T + Q+G
Sbjct: 98 VNV-KRWLHEINQNCDDVCRILVGNK----------NDDPERKVVETEDAYKFAGQMGIQ 146
Query: 153 YYIECSSKTQQNVKAVFD 170
+ E S+K NV+ +F+
Sbjct: 147 LF-ETSAKENVNVEEMFN 163
>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal
Structure Of The Small G Protein Rab3a Complexed With
The Effector Domain Of Rabphilin-3a
Length = 203
Score = 60.5 bits (145), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 69/139 (49%), Gaps = 14/139 (10%)
Query: 34 YIPTVFDNFSANVVAEGTT-VNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
++ TV +F + + L +WDTAG E Y + YRGA F+L + + + S+
Sbjct: 37 FVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAXGFILXYDITNEESF 96
Query: 93 ENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA 151
N ++ W +++ YS V+LVG K D +++ V++ +G +L +G
Sbjct: 97 -NAVQDWSTQIKTYSWDNAQVLLVGNKCDXEDER----------VVSSERGRQLADHLGF 145
Query: 152 SYYIECSSKTQQNVKAVFD 170
++ E S+K NVK F+
Sbjct: 146 EFF-EASAKDNINVKQTFE 163
>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|B Chain B, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|C Chain C, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|D Chain D, Gdp-Bound Rab2a Gtpase
Length = 174
Score = 60.5 bits (145), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 67/135 (49%), Gaps = 14/135 (10%)
Query: 37 TVFDNFSANVVA-EGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV 95
T+ F A ++ +G + L +WDTAGQE + + YRGA +L + + R ++ N
Sbjct: 42 TIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTF-NH 100
Query: 96 LKKWIPEL-QHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYY 154
L W+ + QH + + ++L+G K DL + V +GE ++ G +
Sbjct: 101 LTTWLEDARQHSNSNMVIMLIGNKSDLESRR----------EVKKEEGEAFAREHGL-IF 149
Query: 155 IECSSKTQQNVKAVF 169
+E S+KT NV+ F
Sbjct: 150 METSAKTASNVEEAF 164
>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution
Length = 170
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 67/136 (49%), Gaps = 11/136 (8%)
Query: 36 PTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYEN 94
PT+ F + V TV +WDTAGQE + L P YR A ++ + + S+
Sbjct: 34 PTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALVVYDVTKPQSFIK 93
Query: 95 VLKKWIPEL-QHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASY 153
+ W+ EL + S + + LVG K+D ++ G V +GE+L ++ G +
Sbjct: 94 A-RHWVKELHEQASKDIIIALVGNKIDXLQE-------GGERKVAREEGEKLAEEKGLLF 145
Query: 154 YIECSSKTQQNVKAVF 169
+ E S+KT +NV VF
Sbjct: 146 F-ETSAKTGENVNDVF 160
>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase
Length = 169
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 72/155 (46%), Gaps = 24/155 (15%)
Query: 27 GRSSI-WDYIPTVFD-NFSANVVAEGTTVNLG---------LWDTAGQEDYNRLRPLSYR 75
G+SSI W ++ FD N + + A T + +WDTAGQE + L P+ YR
Sbjct: 17 GKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQERFRALAPMYYR 76
Query: 76 GADVFVLAFSLVSRASYENVLKKWIPEL-QHYSPGVPVVLVGTKLDLREDKHYLADHPGL 134
G+ ++ + + ++ + LK W+ EL QH P + V + G K DL + +
Sbjct: 77 GSAAAIIVYDITKEETF-STLKNWVRELRQHGPPSIVVAIAGNKCDLTDVRE-------- 127
Query: 135 VPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 169
V ++ I A ++E S+K N+ +F
Sbjct: 128 --VMERDAKDYADSIHA-IFVETSAKNAININELF 159
>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution
pdb|1KY3|A Chain A, Gdp-Bound Ypt7p At 1.35 A Resolution
Length = 182
Score = 59.3 bits (142), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/144 (32%), Positives = 70/144 (48%), Gaps = 17/144 (11%)
Query: 34 YIPTVFDNF-SANVVAEGTTV-NLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRAS 91
Y T+ +F + V +G V + +WDTAGQE + L YRGAD VL + + + +S
Sbjct: 37 YKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASS 96
Query: 92 YENVLKKWIPE-LQHY---SPGV-PVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELR 146
+EN+ K W E L H SP P V++G K+D E K +++ +EL
Sbjct: 97 FENI-KSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKS---------AQELA 146
Query: 147 KQIGASYYIECSSKTQQNVKAVFD 170
K +G S+K NV F+
Sbjct: 147 KSLGDIPLFLTSAKNAINVDTAFE 170
>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp
pdb|2O52|B Chain B, Crystal Structure Of Human Rab4b In Complex With Gdp
Length = 200
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/139 (33%), Positives = 67/139 (48%), Gaps = 14/139 (10%)
Query: 33 DYIPTVFDNFSANVV-AEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRAS 91
D T+ F + VV G TV L +WDTAGQE + + YRGA +L + + SR +
Sbjct: 53 DSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRET 112
Query: 92 YENVLKKWIPELQHY-SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG 150
Y N L W+ + + SP + V+L G K DL ++ L AQ EL
Sbjct: 113 Y-NSLAAWLTDARTLASPNIVVILCGNKKDLDPEREVTF----LEASRFAQENEL----- 162
Query: 151 ASYYIECSSKTQQNVKAVF 169
++E S+ T +NV+ F
Sbjct: 163 --MFLETSALTGENVEEAF 179
>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase
Length = 170
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 64/131 (48%), Gaps = 13/131 (9%)
Query: 40 DNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKW 99
D S + E T+ L LWDTAGQE + L P R + V+ + + + S++ KW
Sbjct: 42 DFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQT-TKW 100
Query: 100 IPELQ-HYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECS 158
I +++ V ++LVG K DL + + V+ +GE K++ +IE S
Sbjct: 101 IDDVRTERGSDVIIMLVGNKTDLADKRQ----------VSIEEGERKAKELNV-MFIETS 149
Query: 159 SKTQQNVKAVF 169
+K NVK +F
Sbjct: 150 AKAGYNVKQLF 160
>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp
pdb|2HUP|B Chain B, Crystal Structure Of Human Rab43 In Complex With Gdp
Length = 201
Score = 58.2 bits (139), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 62/122 (50%), Gaps = 12/122 (9%)
Query: 49 EGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS- 107
+G V L +WDTAGQE + + YR A+ +LA+ + R+S+ +V WI +++ Y+
Sbjct: 74 QGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSV-PHWIEDVRKYAG 132
Query: 108 PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKA 167
+ +L+G K DL E L V+ A+ + L + IE S+K NV+
Sbjct: 133 SNIVQLLIGNKSDLSE----------LREVSLAEAQSLAEHYDILCAIETSAKDSSNVEE 182
Query: 168 VF 169
F
Sbjct: 183 AF 184
>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed
With Gdp
Length = 162
Score = 57.4 bits (137), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 58/118 (49%), Gaps = 13/118 (11%)
Query: 53 VNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPE-LQHYSPGVP 111
V L LWDTAGQE + L P R + ++ + + +R S+EN KWI + L V
Sbjct: 50 VRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTT-KWIQDILNERGKDVI 108
Query: 112 VVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 169
+ LVG K DL + L VT +G + ++ ++ E S+K N+K +F
Sbjct: 109 IALVGNKTDLGD----------LRKVTYEEGXQKAQEYNTXFH-ETSAKAGHNIKVLF 155
>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a
pdb|3BC1|E Chain E, Crystal Structure Of The Complex Rab27a-slp2a
Length = 195
Score = 57.4 bits (137), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 40/122 (32%), Positives = 58/122 (47%), Gaps = 14/122 (11%)
Query: 46 VVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQH 105
V G ++L LWDTAG E + L +R A F+L F L + S+ NV + WI +LQ
Sbjct: 63 AVGRGQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNV-RNWISQLQM 121
Query: 106 --YSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ 163
YS +VL G K DL + + V + EL ++ G Y+ E S+
Sbjct: 122 HAYSENPDIVLCGNKSDLEDQR----------AVKEEEARELAEKYGIPYF-ETSAANGT 170
Query: 164 NV 165
N+
Sbjct: 171 NI 172
>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase
Length = 179
Score = 57.4 bits (137), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 63/121 (52%), Gaps = 13/121 (10%)
Query: 50 GTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-P 108
G + L +WDTAGQE + + YRGA ++ + + R++Y N L W+ + ++ + P
Sbjct: 61 GQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTY-NHLSSWLTDARNLTNP 119
Query: 109 GVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAV 168
++L+G K DL + VT + ++ ++ G ++E S+KT +NV+
Sbjct: 120 NTVIILIGNKADLEAQR----------DVTYEEAKQFAEENGL-LFLEASAKTGENVEDA 168
Query: 169 F 169
F
Sbjct: 169 F 169
>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex
Length = 188
Score = 57.4 bits (137), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 64/132 (48%), Gaps = 13/132 (9%)
Query: 39 FDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKK 98
D S + E TV L LWDTAG E + L P R + V V+ + + + S++ K
Sbjct: 41 IDFLSKTMYLEDRTVRLQLWDTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTT-K 99
Query: 99 WIPELQ-HYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIEC 157
WI +++ V ++LVG K DL + + V+ +GE K++ +IE
Sbjct: 100 WIDDVRTERGSDVIIMLVGNKTDLADKRQ----------VSIEEGERKAKELNV-MFIET 148
Query: 158 SSKTQQNVKAVF 169
S+K NVK +F
Sbjct: 149 SAKAGYNVKQLF 160
>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|B Chain B, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|C Chain C, Rab6-Gtp:gcc185 Rab Binding Domain Complex
Length = 211
Score = 57.0 bits (136), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 77/173 (44%), Gaps = 26/173 (15%)
Query: 11 FATQVTSFLLYVL---SVSGRSSIWDYIPTVFDN----------FSANVVAEGTTVNLGL 57
F + F L L SV S I ++ FDN S + E TV L L
Sbjct: 10 FGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQL 69
Query: 58 WDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ-HYSPGVPVVLVG 116
WDTAG E + L P R + V V+ + + + S++ KWI +++ V ++LVG
Sbjct: 70 WDTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQT-TKWIDDVRTERGSDVIIMLVG 128
Query: 117 TKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 169
K DL + + V+ +GE K++ +IE S+K NVK +F
Sbjct: 129 NKTDLADKRQ----------VSIEEGERKAKELNV-MFIETSAKAGYNVKQLF 170
>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With
The Minimal Rab Binding Domain Of Rabenosyn-5
Length = 170
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/155 (27%), Positives = 71/155 (45%), Gaps = 24/155 (15%)
Query: 27 GRSSI-WDYIPTVFD-NFSANVVAEGTTVNLG---------LWDTAGQEDYNRLRPLSYR 75
G+SSI W ++ FD N + + A T + +WDTAG E + L P+ YR
Sbjct: 18 GKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYR 77
Query: 76 GADVFVLAFSLVSRASYENVLKKWIPEL-QHYSPGVPVVLVGTKLDLREDKHYLADHPGL 134
G+ ++ + + ++ + LK W+ EL QH P + V + G K DL + +
Sbjct: 78 GSAAAIIVYDITKEETF-STLKNWVRELRQHGPPSIVVAIAGNKCDLTDVRE-------- 128
Query: 135 VPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 169
V ++ I A ++E S+K N+ +F
Sbjct: 129 --VMERDAKDYADSIHA-IFVETSAKNAININELF 160
>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
pdb|2ERX|B Chain B, Crystal Structure Of Diras2 In Complex With Gdp And
Inorganic Phosphate
Length = 172
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 66/138 (47%), Gaps = 13/138 (9%)
Query: 34 YIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYE 93
YIPTV D + + + + L + DT G + ++ LS F+L +S+ SR S E
Sbjct: 32 YIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLE 91
Query: 94 NV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA 151
+ + + I E++ +P++LVG K D + V +++ E L +
Sbjct: 92 ELKPIYEQICEIKGDVESIPIMLVGNKCDESPSRE----------VQSSEAEALARTWKC 141
Query: 152 SYYIECSSKTQQNVKAVF 169
+ ++E S+K NVK +F
Sbjct: 142 A-FMETSAKLNHNVKELF 158
>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp
Length = 195
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 63/127 (49%), Gaps = 15/127 (11%)
Query: 46 VVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQH 105
+ +G L +WDTAGQE + L P YRGA +L + + R ++ L W+ EL+
Sbjct: 57 ISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVK-LDNWLNELET 115
Query: 106 YSPGVPVV--LVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ 163
Y +V LVG K+D +E++ V +G + ++ + +IE S+KT
Sbjct: 116 YCTRNDIVNXLVGNKID-KENRE----------VDRNEGLKFARK-HSXLFIEASAKTCD 163
Query: 164 NVKAVFD 170
V+ F+
Sbjct: 164 GVQCAFE 170
>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|3RAP|S Chain S, The Small G Protein Rap2 In A Non Catalytic Complex With
Gtp
pdb|1KAO|A Chain A, Crystal Structure Of The Small G Protein Rap2a With Gdp
pdb|2RAP|A Chain A, The Small G Protein Rap2a In Complex With Gtp
Length = 167
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 53/93 (56%), Gaps = 3/93 (3%)
Query: 31 IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA 90
I Y PT+ D + + + + L + DTAG E + +R L + F+L +SLV++
Sbjct: 29 IEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQ 88
Query: 91 SYENV--LKKWIPELQHYSPGVPVVLVGTKLDL 121
S++++ ++ I ++ Y VPV+LVG K+DL
Sbjct: 89 SFQDIKPMRDQIIRVKRYEK-VPVILVGNKVDL 120
>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp
pdb|2P5S|B Chain B, Rab Domain Of Human Rasef In Complex With Gdp
Length = 199
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/160 (28%), Positives = 76/160 (47%), Gaps = 9/160 (5%)
Query: 7 LACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY 66
LA A +SFL+ + R +I + F ++ +G L LWDTAGQE +
Sbjct: 33 LAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQ--MKTLIVDGERTVLQLWDTAGQERF 90
Query: 67 NRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDK 125
+ +R AD +L + + S+ N+ ++W+ ++ + VP++LVG K D+R+
Sbjct: 91 RSIAKSYFRKADGVLLLYDVTCEKSFLNI-REWVDMIEDAAHETVPIMLVGNKADIRD-- 147
Query: 126 HYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNV 165
A G V GE+L GA + E S+K N+
Sbjct: 148 --TAATEGQKCVPGHFGEKLAMTYGA-LFCETSAKDGSNI 184
>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant
pdb|1QG4|B Chain B, Canine Gdp-Ran F72y Mutant
Length = 216
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 53 VNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPV 112
+ +WDTAGQE Y LR Y A ++ F + SR +Y+NV W +L +P+
Sbjct: 59 IKFNVWDTAGQEKYGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPI 117
Query: 113 VLVGTKLDLREDK 125
VL G K+D+++ K
Sbjct: 118 VLCGNKVDIKDRK 130
>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp
pdb|1X1S|A Chain A, Crystal Structure Of M-ras In Complex With Gppnhp
Length = 178
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 66/130 (50%), Gaps = 14/130 (10%)
Query: 33 DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
DY PT+ D++ + + L + DTAGQE+++ +R R D F++ +S+ +AS+
Sbjct: 41 DYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASF 100
Query: 93 ENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG 150
E+V + I ++ P++LV K+DL L VT QG+E+ +
Sbjct: 101 EHVDRFHQLILRVKDRE-SFPMILVANKVDLMH----------LRKVTRDQGKEMATKYN 149
Query: 151 ASYYIECSSK 160
YIE S+K
Sbjct: 150 IP-YIETSAK 158
>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp
pdb|3KKQ|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gdp
Length = 183
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 66/130 (50%), Gaps = 14/130 (10%)
Query: 33 DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
DY PT+ D++ + + L + DTAGQE+++ +R R D F++ +S+ +AS+
Sbjct: 46 DYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASF 105
Query: 93 ENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG 150
E+V + I ++ P++LV K+DL L VT QG+E+ +
Sbjct: 106 EHVDRFHQLILRVKDRE-SFPMILVANKVDLMH----------LRKVTRDQGKEMATKYN 154
Query: 151 ASYYIECSSK 160
YIE S+K
Sbjct: 155 IP-YIETSAK 163
>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a
pdb|2BME|A Chain A, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|B Chain B, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|C Chain C, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|D Chain D, High Resolution Structure Of Gppnhp-Bound Human Rab4a
Length = 186
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/121 (32%), Positives = 58/121 (47%), Gaps = 13/121 (10%)
Query: 50 GTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SP 108
G V L +WDTAGQE + + YRGA +L + + SR +Y N L W+ + + S
Sbjct: 56 GKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETY-NALTNWLTDARMLASQ 114
Query: 109 GVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAV 168
+ ++L G K DL D+ L AQ EL ++E S+ T +NV+
Sbjct: 115 NIVIILCGNKKDLDADREV----TFLEASRFAQENEL-------MFLETSALTGENVEEA 163
Query: 169 F 169
F
Sbjct: 164 F 164
>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
pdb|3TSO|B Chain B, Structure Of The Cancer Associated Rab25 Protein In
Complex With Fip2
Length = 178
Score = 55.1 bits (131), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 57/117 (48%), Gaps = 10/117 (8%)
Query: 33 DYIPTVFDNFSANVVAEGTT-VNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRAS 91
D T+ FS V GT V +WDTAG E Y + YRGA +L F L +
Sbjct: 38 DSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQT 97
Query: 92 YENVLKKWIPEL-QHYSPGVPVVLVGTKLDLR-------EDKHYLADHPGLVPVTTA 140
Y V+++W+ EL H + V+LVG K DL E+ A++ GL+ + T+
Sbjct: 98 YA-VVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETS 153
>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its
Cargo (Kap60p) And Rangtp
Length = 176
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 53 VNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPV 112
+ +WDTAGQE + LR Y A ++ F + SR +Y+NV W +L +P+
Sbjct: 59 IKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPI 117
Query: 113 VLVGTKLDLREDK 125
VL G K+D+++ K
Sbjct: 118 VLCGNKVDIKDRK 130
>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l)
pdb|4DKX|B Chain B, Crystal Structure Of The Rab 6a'(Q72l)
Length = 216
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 49/173 (28%), Positives = 76/173 (43%), Gaps = 26/173 (15%)
Query: 11 FATQVTSFLLYVL---SVSGRSSIWDYIPTVFDN----------FSANVVAEGTTVNLGL 57
F + F L L SV S I ++ FDN S + E T+ L L
Sbjct: 7 FGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQL 66
Query: 58 WDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ-HYSPGVPVVLVG 116
WDTAG E + L P R + V+ + + + S++ KWI +++ V ++LVG
Sbjct: 67 WDTAGLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTT-KWIDDVRTERGSDVIIMLVG 125
Query: 117 TKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 169
K DL + + V+ +GE K++ +IE S+K NVK +F
Sbjct: 126 NKTDLADKRQ----------VSIEEGERKAKELNV-MFIETSAKAGYNVKQLF 167
>pdb|2BKU|A Chain A, Kap95p:rangtp Complex
pdb|2BKU|C Chain C, Kap95p:rangtp Complex
Length = 177
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 53 VNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPV 112
+ +WDTAGQE + LR Y A ++ F + SR +Y+NV W +L +P+
Sbjct: 59 IKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPI 117
Query: 113 VLVGTKLDLREDK 125
VL G K+D+++ K
Sbjct: 118 VLCGNKVDIKDRK 130
>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp
Length = 193
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 57/117 (48%), Gaps = 10/117 (8%)
Query: 33 DYIPTVFDNFSANVVAEGTT-VNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRAS 91
D T+ FS V GT V +WDTAG E Y + YRGA +L F L +
Sbjct: 53 DSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQT 112
Query: 92 YENVLKKWIPEL-QHYSPGVPVVLVGTKLDLR-------EDKHYLADHPGLVPVTTA 140
Y V+++W+ EL H + V+LVG K DL E+ A++ GL+ + T+
Sbjct: 113 YA-VVERWLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETS 168
>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|B Chain B, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|P Chain P, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
Length = 183
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 66/130 (50%), Gaps = 14/130 (10%)
Query: 33 DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
+Y PT+ D++ + + L + DTAGQE+++ +R R D F++ +S+ +AS+
Sbjct: 46 EYDPTIEDSYRKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASF 105
Query: 93 ENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG 150
E+V + I ++ P++LV K+DL L VT QG+E+ +
Sbjct: 106 EHVDRFHQLILRVKDRE-SFPMILVANKVDLMH----------LRKVTRDQGKEMATKYN 154
Query: 151 ASYYIECSSK 160
YIE S+K
Sbjct: 155 IP-YIETSAK 163
>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
pdb|3EA5|C Chain C, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt
The Gtp- Bound Conformation: Implications For Nuclear
Import Complex Assembly Dynamics
Length = 216
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 53 VNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPV 112
+ +WDTAGQE + LR Y A ++ F + SR +Y+NV W +L +P+
Sbjct: 59 IKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPI 117
Query: 113 VLVGTKLDLREDK 125
VL G K+D+++ K
Sbjct: 118 VLCGNKVDIKDRK 130
>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14
Length = 196
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 62/121 (51%), Gaps = 13/121 (10%)
Query: 50 GTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-P 108
G + L +WDTAGQ + + YRGA ++ + + R++Y N L W+ + ++ + P
Sbjct: 76 GQKIKLQIWDTAGQGRFRAVTRSYYRGAAGALMVYDITRRSTY-NHLSSWLTDARNLTNP 134
Query: 109 GVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAV 168
++L+G K DL + VT + ++ ++ G ++E S+KT +NV+
Sbjct: 135 NTVIILIGNKADLEAQR----------DVTYEEAKQFAEENGL-LFLEASAKTGENVEDA 183
Query: 169 F 169
F
Sbjct: 184 F 184
>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex
pdb|1RRP|C Chain C, Structure Of The Ran-Gppnhp-Ranbd1 Complex
Length = 204
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 53 VNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPV 112
+ +WDTAGQE + LR Y A ++ F + SR +Y+NV W +L +P+
Sbjct: 52 IKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPI 110
Query: 113 VLVGTKLDLREDK 125
VL G K+D+++ K
Sbjct: 111 VLCGNKVDIKDRK 123
>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|B Chain B, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|C Chain C, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|D Chain D, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|E Chain E, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
Length = 181
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 42/67 (62%), Gaps = 2/67 (2%)
Query: 57 LWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ-HYSPGVPVVLV 115
+WDTAGQE Y + YRGA +L + + + S+EN+ +KW+ EL+ + + ++LV
Sbjct: 61 IWDTAGQERYRAITSAYYRGAVGALLVYDITKKNSFENI-EKWLKELRDNADSNIVILLV 119
Query: 116 GTKLDLR 122
G K DL+
Sbjct: 120 GNKSDLK 126
>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear
Transport Complex
Length = 216
Score = 54.3 bits (129), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 53 VNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPV 112
+ +WDTAGQE + LR Y A ++ F + SR +Y+NV W +L +P+
Sbjct: 59 IKFNVWDTAGQEKFGGLRDGYYIQAQCAIIXFDVTSRVTYKNV-PNWHRDLVRVCENIPI 117
Query: 113 VLVGTKLDLREDK 125
VL G K+D+++ K
Sbjct: 118 VLCGNKVDIKDRK 130
>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex
pdb|1A2K|D Chain D, Gdpran-Ntf2 Complex
pdb|1A2K|E Chain E, Gdpran-Ntf2 Complex
pdb|1IBR|A Chain A, Complex Of Ran With Importin Beta
pdb|1IBR|C Chain C, Complex Of Ran With Importin Beta
pdb|1I2M|A Chain A, Ran-Rcc1-So4 Complex
pdb|1I2M|C Chain C, Ran-Rcc1-So4 Complex
pdb|1K5D|A Chain A, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|D Chain D, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|G Chain G, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|J Chain J, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|A Chain A, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|D Chain D, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|G Chain G, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|J Chain J, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|3CH5|A Chain A, The Crystal Structure Of The Rangdp-Nup153znf2 Complex
pdb|3A6P|C Chain C, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|3A6P|H Chain H, Crystal Structure Of Exportin-5:rangtp:pre-Mirna Complex
pdb|4GPT|A Chain A, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
pdb|4GMX|A Chain A, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
pdb|4HAT|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1- Ran-ranbp1
pdb|4HAV|A Chain A, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
pdb|4HAW|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
pdb|4HAX|A Chain A, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1(k579a)-ran-ranbp1
pdb|4HAY|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
pdb|4HAZ|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
pdb|4HB0|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
pdb|4HB2|A Chain A, Crystal Structure Of Crm1-ran-ranbp1
pdb|4HB3|A Chain A, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
pdb|4HB4|A Chain A, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 216
Score = 54.3 bits (129), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 53 VNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPV 112
+ +WDTAGQE + LR Y A ++ F + SR +Y+NV W +L +P+
Sbjct: 59 IKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPI 117
Query: 113 VLVGTKLDLREDK 125
VL G K+D+++ K
Sbjct: 118 VLCGNKVDIKDRK 130
>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp
pdb|3GJ0|B Chain B, Crystal Structure Of Human Rangdp
pdb|3GJ3|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf2 Complex
Length = 221
Score = 54.3 bits (129), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 53 VNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPV 112
+ +WDTAGQE + LR Y A ++ F + SR +Y+NV W +L +P+
Sbjct: 64 IKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPI 122
Query: 113 VLVGTKLDLREDK 125
VL G K+D+++ K
Sbjct: 123 VLCGNKVDIKDRK 135
>pdb|1BYU|A Chain A, Canine Gdp-Ran
pdb|1BYU|B Chain B, Canine Gdp-Ran
Length = 216
Score = 54.3 bits (129), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 53 VNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPV 112
+ +WDTAGQE + LR Y A ++ F + SR +Y+NV W +L +P+
Sbjct: 59 IKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPI 117
Query: 113 VLVGTKLDLREDK 125
VL G K+D+++ K
Sbjct: 118 VLCGNKVDIKDRK 130
>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ4|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf3 Complex
pdb|3GJ5|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ5|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf4 Complex
pdb|3GJ6|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf1 Complex
pdb|3GJ7|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ7|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf12 Complex
pdb|3GJ8|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
pdb|3GJ8|C Chain C, Crystal Structure Of Human Rangdp-Nup153znf34 Complex
Length = 221
Score = 53.9 bits (128), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 53 VNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPV 112
+ +WDTAGQE + LR Y A ++ F + SR +Y+NV W +L +P+
Sbjct: 64 IKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPI 122
Query: 113 VLVGTKLDLREDK 125
VL G K+D+++ K
Sbjct: 123 VLCGNKVDIKDRK 135
>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1
Length = 201
Score = 53.9 bits (128), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 73/139 (52%), Gaps = 16/139 (11%)
Query: 34 YIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSY-RGADVFVLAFSLVSRASY 92
Y PTV + +S V +L L DTAGQ++Y+ L P S+ G +VL +S+ S S+
Sbjct: 53 YDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSIL-PYSFIIGVHGYVLVYSVTSLHSF 111
Query: 93 ENVLKKWIPELQ--HYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG 150
+ V++ +L H VPVVLVG K DL ++ V +G++L + G
Sbjct: 112 Q-VIESLYQKLHEGHGKTRVPVVLVGNKADLSPER----------EVQAVEGKKLAESWG 160
Query: 151 ASYYIECSSKTQQNVKAVF 169
A+ ++E S++ Q + +F
Sbjct: 161 AT-FMESSARENQLTQGIF 178
>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 1)
pdb|3PIT|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 2)
Length = 183
Score = 53.5 bits (127), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 67/132 (50%), Gaps = 14/132 (10%)
Query: 31 IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA 90
+ +Y PT+ D++ + + L + DTAGQE+++ +R R D F++ +S+ +A
Sbjct: 44 VPEYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKA 103
Query: 91 SYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ 148
S+E+V + I ++ P++LV K+DL L VT QG+E+ +
Sbjct: 104 SFEHVDRFHQLILRVKDRE-SFPMILVANKVDLMH----------LRKVTRDQGKEMATK 152
Query: 149 IGASYYIECSSK 160
YIE S+K
Sbjct: 153 YNIP-YIETSAK 163
>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|B Chain B, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|C Chain C, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
pdb|2GF0|D Chain D, The Crystal Structure Of The Human Diras1 Gtpase In The
Inactive Gdp Bound State
Length = 199
Score = 53.5 bits (127), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 67/138 (48%), Gaps = 14/138 (10%)
Query: 34 YIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYE 93
YIPT+ D + + + + L + DT G + ++ LS F+L FS+ S+ S E
Sbjct: 37 YIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLE 96
Query: 94 NV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA 151
+ + K I +++ +PV+LVG K D + + V T + + + ++
Sbjct: 97 ELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQRE-----------VDTREAQAVAQEWKC 145
Query: 152 SYYIECSSKTQQNVKAVF 169
+ ++E S+K NVK +F
Sbjct: 146 A-FMETSAKMNYNVKELF 162
>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a
Length = 175
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 58/121 (47%), Gaps = 13/121 (10%)
Query: 50 GTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SP 108
G V L +WDTAGQE + + YRGA +L + + SR +Y N L W+ + + S
Sbjct: 57 GKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETY-NALTNWLTDARMLASQ 115
Query: 109 GVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAV 168
+ ++L G K DL D+ L AQ EL ++E S+ T ++V+
Sbjct: 116 NIVIILCGNKKDLDADREV----TFLEASRFAQENEL-------MFLETSALTGEDVEEA 164
Query: 169 F 169
F
Sbjct: 165 F 165
>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi
Length = 223
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 57/123 (46%), Gaps = 13/123 (10%)
Query: 49 EGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPEL-QHYS 107
EG + +WDTAGQE Y + YRGA ++ + + +SYEN W+ EL ++
Sbjct: 58 EGKRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENC-NHWLSELRENAD 116
Query: 108 PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKA 167
V V L+G K DL +L P T AQ +L + E S+ +NV
Sbjct: 117 DNVAVGLIGNKSDLA----HLRAVPTEESKTFAQENQL-------LFTETSALNSENVDK 165
Query: 168 VFD 170
F+
Sbjct: 166 AFE 168
>pdb|3ICQ|B Chain B, Karyopherin Nuclear State
pdb|3ICQ|C Chain C, Karyopherin Nuclear State
Length = 171
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 53 VNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPV 112
+ +WDTAG E + LR Y A ++ F + SR +Y+NV W +L +P+
Sbjct: 53 IKFDVWDTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNV-PNWHRDLVRVCENIPI 111
Query: 113 VLVGTKLDLREDK 125
VL G K+D++E K
Sbjct: 112 VLCGNKVDVKERK 124
>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex
Length = 172
Score = 52.8 bits (125), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 53 VNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPV 112
+ +WDTAG E + LR Y A ++ F + SR +Y+NV W +L +P+
Sbjct: 54 IKFDVWDTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNV-PNWHRDLVRVCENIPI 112
Query: 113 VLVGTKLDLREDK 125
VL G K+D++E K
Sbjct: 113 VLCGNKVDVKERK 125
>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum,
Pfb0500c
Length = 208
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 65/142 (45%), Gaps = 32/142 (22%)
Query: 35 IPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYEN 94
I +N++ N+ + +WDTAGQE Y + PL YRGA ++ F +S ++ +
Sbjct: 79 ITNQHNNYNENLC----NIKFDIWDTAGQERYASIVPLYYRGATCAIVVFD-ISNSNTLD 133
Query: 95 VLKKWIPELQHYSPGVPVVLVGTKL-------DLREDKHYLADHPGLVPVTTAQGEELRK 147
K W+ +L+ S ++LV K+ D+ E + Y D+ L
Sbjct: 134 RAKTWVNQLK-ISSNYIIILVANKIDKNKFQVDILEVQKYAQDNNLL------------- 179
Query: 148 QIGASYYIECSSKTQQNVKAVF 169
+I+ S+KT N+K +F
Sbjct: 180 ------FIQTSAKTGTNIKNIF 195
>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
Length = 219
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/73 (35%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 53 VNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPV 112
+ +WDTAG E + LR Y A ++ F + SR +Y+NV W +L +P+
Sbjct: 61 IKFDVWDTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNV-PNWHRDLVRVCENIPI 119
Query: 113 VLVGTKLDLREDK 125
VL G K+D++E K
Sbjct: 120 VLCGNKVDVKERK 132
>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant
Length = 216
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 53 VNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPV 112
+ +WDTAGQE + L Y A ++ F + SR +Y+NV W +L +P+
Sbjct: 59 IKFNVWDTAGQEKFGGLEDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPI 117
Query: 113 VLVGTKLDLREDK 125
VL G K+D+++ K
Sbjct: 118 VLCGNKVDIKDRK 130
>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex
Length = 182
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 53 VNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPV 112
+ +WDTAG E + LR Y A ++ F + SR +Y+NV W +L +P+
Sbjct: 61 IKFNVWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPI 119
Query: 113 VLVGTKLDLREDK 125
VL G K+D+++ K
Sbjct: 120 VLCGNKVDIKDRK 132
>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBY|F Chain F, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear
Export Complex
pdb|3NBZ|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NBZ|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal I)
pdb|3NC0|C Chain C, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
pdb|3NC0|F Chain F, Crystal Structure Of The Hiv-1 Rev Nes-Crm1-Rangtp Nuclear
Export Complex (Crystal Ii)
Length = 176
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 53 VNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPV 112
+ +WDTAG E + LR Y A ++ F + SR +Y+NV W +L +P+
Sbjct: 55 IKFNVWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPI 113
Query: 113 VLVGTKLDLREDK 125
VL G K+D+++ K
Sbjct: 114 VLCGNKVDIKDRK 126
>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|C Chain C, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|D Chain D, Canine Gdp-Ran Q69l Mutant
pdb|3RAN|B Chain B, Canine Gdp-Ran Q69l Mutant
pdb|3GJX|C Chain C, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
pdb|3GJX|F Chain F, Crystal Structure Of The Nuclear Export Complex Crm1-
Snurportin1-Rangtp
Length = 216
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 53 VNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPV 112
+ +WDTAG E + LR Y A ++ F + SR +Y+NV W +L +P+
Sbjct: 59 IKFNVWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNV-PNWHRDLVRVCENIPI 117
Query: 113 VLVGTKLDLREDK 125
VL G K+D+++ K
Sbjct: 118 VLCGNKVDIKDRK 130
>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp
pdb|3RWO|B Chain B, Crystal Structure Of Ypt32 In Complex With Gdp
pdb|3RWO|A Chain A, Crystal Structure Of Ypt32 In Complex With Gdp
Length = 185
Score = 50.4 bits (119), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 36/122 (29%), Positives = 53/122 (43%), Gaps = 13/122 (10%)
Query: 49 EGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPEL-QHYS 107
E + +WDTAG E Y + YRGA ++ + + +SYEN W+ EL ++
Sbjct: 55 ENKKIKAQIWDTAGLERYRAITSAYYRGAVGALIVYDISKSSSYENC-NHWLTELRENAD 113
Query: 108 PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKA 167
V V L+G K DL H VP A+ + Q+ + E S+ NV
Sbjct: 114 DNVAVGLIGNKSDLA--------HLRAVPTDEAKNFAMENQM---LFTETSALNSDNVDK 162
Query: 168 VF 169
F
Sbjct: 163 AF 164
>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
pdb|1Z0K|C Chain C, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
Length = 172
Score = 50.4 bits (119), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 57/121 (47%), Gaps = 13/121 (10%)
Query: 50 GTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY-SP 108
G V L +WDTAG E + + YRGA +L + + SR +Y N L W+ + + S
Sbjct: 54 GKYVKLQIWDTAGLERFRSVTRSYYRGAAGALLVYDITSRETY-NALTNWLTDARMLASQ 112
Query: 109 GVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAV 168
+ ++L G K DL D+ L AQ EL ++E S+ T ++V+
Sbjct: 113 NIVIILCGNKKDLDADREV----TFLEASRFAQENEL-------MFLETSALTGEDVEEA 161
Query: 169 F 169
F
Sbjct: 162 F 162
>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With Monoprenylated Rab7 Protein
pdb|1VG8|A Chain A, Gppnhp-Bound Rab7
pdb|1VG8|B Chain B, Gppnhp-Bound Rab7
pdb|1VG8|C Chain C, Gppnhp-Bound Rab7
pdb|1VG8|D Chain D, Gppnhp-Bound Rab7
Length = 207
Score = 50.1 bits (118), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 45/87 (51%), Gaps = 6/87 (6%)
Query: 40 DNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKW 99
D + V+ + V + +WDTAGQE + L YRGAD VL F + + +++ L W
Sbjct: 44 DFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFK-TLDSW 102
Query: 100 IPE-LQHYSP----GVPVVLVGTKLDL 121
E L SP P V++G K+DL
Sbjct: 103 RDEFLIQASPRDPENFPFVVLGNKIDL 129
>pdb|1VG1|A Chain A, Gdp-bound Rab7
pdb|1VG9|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|D Chain D, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|F Chain F, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|H Chain H, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
Length = 185
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 45/87 (51%), Gaps = 6/87 (6%)
Query: 40 DNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKW 99
D + V+ + V + +WDTAGQE + L YRGAD VL F + + +++ L W
Sbjct: 44 DFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFK-TLDSW 102
Query: 100 IPE-LQHYSP----GVPVVLVGTKLDL 121
E L SP P V++G K+DL
Sbjct: 103 RDEFLIQASPRDPENFPFVVLGNKIDL 129
>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
pdb|4DJT|B Chain B, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
Length = 218
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Query: 49 EGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQH-YS 107
+G + +WDTAGQE L+ + Y GA +L F + SR + +N L +W+ E Q
Sbjct: 57 QGNVIKFNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQN-LARWVKEFQAVVG 115
Query: 108 PGVPVVLVGTKLDLR 122
P+V+ K+D++
Sbjct: 116 NEAPIVVCANKIDIK 130
>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase
Length = 189
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 42/77 (54%), Gaps = 4/77 (5%)
Query: 49 EGTTVNLGLWDTAGQEDYNR-LRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY- 106
+G + + LWDTAGQE + + + YR V + + + AS+ + L WI E + +
Sbjct: 65 DGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHS-LPAWIEECKQHL 123
Query: 107 -SPGVPVVLVGTKLDLR 122
+ +P +LVG K DLR
Sbjct: 124 LANDIPRILVGNKCDLR 140
>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|B Chain B, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|C Chain C, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|D Chain D, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|E Chain E, Structure Of Gtp-Bound L129f Mutant Rab7
Length = 207
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 6/87 (6%)
Query: 40 DNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKW 99
D + V+ + V + +WDTAGQE + L YRGAD VL F + + +++ L W
Sbjct: 44 DFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFK-TLDSW 102
Query: 100 IPE-LQHYSP----GVPVVLVGTKLDL 121
E L SP P V++G K+D
Sbjct: 103 RDEFLIQASPRDPENFPFVVLGNKIDF 129
>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33
Gtpase Bound To Gdp And Alf3
Length = 198
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 4/77 (5%)
Query: 49 EGTTVNLGLWDTAGQEDYNR-LRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY- 106
+G + + LWDTAGQE + + + YR V + + AS+ + L WI E + +
Sbjct: 74 DGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDXTNXASFHS-LPAWIEECKQHL 132
Query: 107 -SPGVPVVLVGTKLDLR 122
+ +P +LVG K DLR
Sbjct: 133 LANDIPRILVGNKCDLR 149
>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|B Chain B, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|C Chain C, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|D Chain D, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1YHN|A Chain A, Structure Basis Of Rilp Recruitment By Rab7
Length = 207
Score = 47.0 bits (110), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 6/87 (6%)
Query: 40 DNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKW 99
D + V+ + V + +WDTAG E + L YRGAD VL F + + +++ L W
Sbjct: 44 DFLTKEVMVDDRLVTMQIWDTAGLERFQSLGVAFYRGADCCVLVFDVTAPNTFK-TLDSW 102
Query: 100 IPE-LQHYSP----GVPVVLVGTKLDL 121
E L SP P V++G K+DL
Sbjct: 103 RDEFLIQASPRDPENFPFVVLGNKIDL 129
>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp
Length = 169
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 73/144 (50%), Gaps = 26/144 (18%)
Query: 34 YIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADV--FVLAFSLVSRAS 91
Y PT+ + F+ + G +L L DTAGQ++Y+ + P +Y D+ ++L +S+ S S
Sbjct: 30 YDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYS-IFPQTY-SIDINGYILVYSVTSIKS 87
Query: 92 YENV------LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEEL 145
+E + L + ++Q +P++LVG K DL ++ ++ +G+ L
Sbjct: 88 FEVIKVIHGKLLDMVGKVQ-----IPIMLVGNKKDLHMER----------VISYEEGKAL 132
Query: 146 RKQIGASYYIECSSKTQQNVKAVF 169
+ A+ ++E S+K Q VF
Sbjct: 133 AESWNAA-FLESSAKENQTAVDVF 155
>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp
pdb|1XTR|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With
Gppnhp
pdb|1XTS|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gtp
Length = 177
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 73/144 (50%), Gaps = 26/144 (18%)
Query: 34 YIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADV--FVLAFSLVSRAS 91
Y PT+ + F+ + G +L L DTAGQ++Y+ + P +Y D+ ++L +S+ S S
Sbjct: 35 YDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYS-IFPQTY-SIDINGYILVYSVTSIKS 92
Query: 92 YENV------LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEEL 145
+E + L + ++Q +P++LVG K DL ++ ++ +G+ L
Sbjct: 93 FEVIKVIHGKLLDMVGKVQ-----IPIMLVGNKKDLHMER----------VISYEEGKAL 137
Query: 146 RKQIGASYYIECSSKTQQNVKAVF 169
+ A+ ++E S+K Q VF
Sbjct: 138 AESWNAA-FLESSAKENQTAVDVF 160
>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex
With Pde6d
Length = 181
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 72/143 (50%), Gaps = 24/143 (16%)
Query: 34 YIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYR-GADVFVLAFSLVSRASY 92
Y PT+ + F+ + G +L L DTAGQ++Y+ + P +Y + ++L +S+ S S+
Sbjct: 35 YDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYS-IFPQTYSIDINGYILVYSVTSIKSF 93
Query: 93 ENV------LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELR 146
E + L + ++Q +P++LVG K DL ++ ++ +G+ L
Sbjct: 94 EVIKVIHGKLLDMVGKVQ-----IPIMLVGNKKDLHMER----------VISYEEGKALA 138
Query: 147 KQIGASYYIECSSKTQQNVKAVF 169
+ A+ ++E S+K Q VF
Sbjct: 139 ESWNAA-FLESSAKENQTAVDVF 160
>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
pdb|3SEA|B Chain B, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
Length = 167
Score = 43.9 bits (102), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 38/142 (26%), Positives = 72/142 (50%), Gaps = 26/142 (18%)
Query: 36 PTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADV--FVLAFSLVSRASYE 93
PT+ + F+ + G +L L DTAGQ++Y+ + P +Y D+ ++L +S+ S S+E
Sbjct: 35 PTIENTFTKLITVNGQEYHLQLVDTAGQDEYS-IFPQTY-SIDINGYILVYSVTSIKSFE 92
Query: 94 NV------LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRK 147
+ L + ++Q +P++LVG K DL ++ ++ +G+ L +
Sbjct: 93 VIKVIHGKLLDMVGKVQ-----IPIMLVGNKKDLHMER----------VISYEEGKALAE 137
Query: 148 QIGASYYIECSSKTQQNVKAVF 169
A+ ++E S+K Q VF
Sbjct: 138 SWNAA-FLESSAKENQTAVDVF 158
>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 62/136 (45%), Gaps = 17/136 (12%)
Query: 40 DNFSANVVAEG---TTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVL 96
D + ++ +G T + L +W+ G+ ++ L + D +++ +S+ RAS+E
Sbjct: 43 DTYERTLMVDGESATIILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKAS 100
Query: 97 KKWIP-ELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYI 155
+ I + +P++LVG K DL + V V+ + + + +I
Sbjct: 101 ELRIQLRRARQTEDIPIILVGNKSDLVRXRE--------VSVSEGRAXAV---VFDXKFI 149
Query: 156 ECSSKTQQNVKAVFDA 171
E S+ Q NVK +F+
Sbjct: 150 ETSAAVQHNVKELFEG 165
>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In
Complex To Mg.Gdp
Length = 192
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 62/136 (45%), Gaps = 17/136 (12%)
Query: 40 DNFSANVVAEG---TTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVL 96
D + ++ +G T + L +W+ G+ ++ L + D +++ +S+ RAS+E
Sbjct: 43 DTYERTLMVDGESATIILLDMWENKGENEW--LHDHXMQVGDAYLIVYSITDRASFEKAS 100
Query: 97 KKWIP-ELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYI 155
+ I + +P++LVG K DL + V V+ + + + +I
Sbjct: 101 ELRIQLRRARQTEDIPIILVGNKSDLVRXRE--------VSVSEGRAXAV---VFDCKFI 149
Query: 156 ECSSKTQQNVKAVFDA 171
E S+ Q NVK +F+
Sbjct: 150 ETSAAVQHNVKELFEG 165
>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c
Length = 186
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 44/96 (45%), Gaps = 16/96 (16%)
Query: 33 DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
D IPTV F+ V +G V + +WD GQ + + RG + V R
Sbjct: 50 DMIPTV--GFNMRKVTKGN-VTIKIWDIGGQPRFRSMWERYCRGVNAIVYMIDAADREKI 106
Query: 93 E-------NVLKKWIPELQHYSPGVPVVLVGTKLDL 121
E N+L K P+LQ G+PV+++G K DL
Sbjct: 107 EASRNELHNLLDK--PQLQ----GIPVLVLGNKRDL 136
>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp
pdb|2HT6|B Chain B, Crystal Structure Of Human Gem G-Domain Bound To Gdp
Length = 174
Score = 41.2 bits (95), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 62/136 (45%), Gaps = 17/136 (12%)
Query: 40 DNFSANVVAEG---TTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVL 96
D + ++ +G T + L +W+ G+ ++ L + D +++ +S+ RAS+E
Sbjct: 43 DTYERTLMVDGESATIILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKAS 100
Query: 97 KKWIP-ELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYI 155
+ I + +P++LVG K DL + V+ ++G + +I
Sbjct: 101 ELRIQLRRARQTEDIPIILVGNKSDLVRCR----------EVSVSEGRAC-AVVFDCKFI 149
Query: 156 ECSSKTQQNVKAVFDA 171
E S+ Q NVK +F+
Sbjct: 150 ETSAAVQHNVKELFEG 165
>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem
Length = 211
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 62/136 (45%), Gaps = 17/136 (12%)
Query: 40 DNFSANVVAEG---TTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVL 96
D + ++ +G T + L +W+ G+ ++ L + D +++ +S+ RAS+E
Sbjct: 74 DTYERTLMVDGESATIILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKAS 131
Query: 97 KKWIP-ELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYI 155
+ I + +P++LVG K DL + V+ ++G + +I
Sbjct: 132 ELRIQLRRARQTEDIPIILVGNKSDLVRCR----------EVSVSEGRAC-AVVFDCKFI 180
Query: 156 ECSSKTQQNVKAVFDA 171
E S+ Q NVK +F+
Sbjct: 181 ETSAAVQHNVKELFEG 196
>pdb|3D6T|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-Associated Leucine-Rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 171
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 38/75 (50%)
Query: 55 LGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVL 114
L +WD AG+E++ P +++ + L + + K W+ ++ + PV+L
Sbjct: 56 LNVWDFAGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSSPVIL 115
Query: 115 VGTKLDLREDKHYLA 129
VGT LD+ ++K A
Sbjct: 116 VGTHLDVSDEKQRKA 130
>pdb|2ZEJ|A Chain A, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
pdb|2ZEJ|B Chain B, Structure Of The Roc Domain From The Parkinson's
Disease-associated Leucine-rich Repeat Kinase 2 Reveals
A Dimeric Gtpase
Length = 184
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 38/75 (50%)
Query: 55 LGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVL 114
L +WD AG+E++ P +++ + L + + K W+ ++ + PV+L
Sbjct: 58 LNVWDFAGREEFYSTHPHFXTQRALYLAVYDLSKGQAEVDAXKPWLFNIKARASSSPVIL 117
Query: 115 VGTKLDLREDKHYLA 129
VGT LD+ ++K A
Sbjct: 118 VGTHLDVSDEKQRKA 132
>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
Length = 188
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 43/96 (44%), Gaps = 16/96 (16%)
Query: 33 DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
D IPTV F+ + +G V + LWD GQ + + RG V +
Sbjct: 50 DMIPTV--GFNMRKITKGN-VTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKI 106
Query: 93 E-------NVLKKWIPELQHYSPGVPVVLVGTKLDL 121
E N+L K P+LQ G+PV+++G K DL
Sbjct: 107 EASKNELHNLLDK--PQLQ----GIPVLVLGNKRDL 136
>pdb|2H18|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b
(Arl10b)
Length = 193
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 43/96 (44%), Gaps = 16/96 (16%)
Query: 33 DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY 92
D IPTV F+ + +G V + LWD GQ + + RG V +
Sbjct: 59 DMIPTV--GFNMRKITKGN-VTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKI 115
Query: 93 E-------NVLKKWIPELQHYSPGVPVVLVGTKLDL 121
E N+L K P+LQ G+PV+++G K DL
Sbjct: 116 EASKNELHNLLDK--PQLQ----GIPVLVLGNKRDL 145
>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp
Length = 195
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 60/136 (44%), Gaps = 15/136 (11%)
Query: 40 DNFSANVVAEGTTVNLGLWDTAGQEDYNR-LRPLSYRGADVFVLAFSLVSRASYENVLKK 98
D + ++ + V L ++D Q D LR + D F++ FS+ R S+ V +
Sbjct: 59 DTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPET 118
Query: 99 WIPELQHYSP--GVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIE 156
+ L+ P +PV+LVG K DL + V+ +G L + + +IE
Sbjct: 119 LL-RLRAGRPHHDLPVILVGNKSDLARSR----------EVSLEEGRHLAGTL-SCKHIE 166
Query: 157 CSSKTQQNVKAVFDAA 172
S+ N + +F+ A
Sbjct: 167 TSAALHHNTRELFEGA 182
>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
pdb|3Q85|B Chain B, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex
Length = 169
Score = 37.0 bits (84), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 60/136 (44%), Gaps = 15/136 (11%)
Query: 40 DNFSANVVAEGTTVNLGLWDTAGQEDYNR-LRPLSYRGADVFVLAFSLVSRASYENVLKK 98
D + ++ + V L ++D Q D L+ + D F++ FS+ R S+ V +
Sbjct: 38 DTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPET 97
Query: 99 WIPELQHYSP--GVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIE 156
+ L+ P +PV+LVG K DL + V+ +G L + + +IE
Sbjct: 98 LL-RLRAGRPHHDLPVILVGNKSDLARSR----------EVSLEEGRHLAGTL-SCKHIE 145
Query: 157 CSSKTQQNVKAVFDAA 172
S+ N + +F+ A
Sbjct: 146 TSAALHHNTRELFEGA 161
>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
pdb|4AII|B Chain B, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound
To Gdp
Length = 180
Score = 36.6 bits (83), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 60/136 (44%), Gaps = 15/136 (11%)
Query: 40 DNFSANVVAEGTTVNLGLWDTAGQEDYNR-LRPLSYRGADVFVLAFSLVSRASYENVLKK 98
D + ++ + V L ++D Q D L+ + D F++ FS+ R S+ V +
Sbjct: 48 DTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPET 107
Query: 99 WIPELQHYSP--GVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIE 156
+ L+ P +PV+LVG K DL + V+ +G L + + +IE
Sbjct: 108 LL-RLRAGRPHHDLPVILVGNKSDLARSR----------EVSLEEGRHLAGTL-SCKHIE 155
Query: 157 CSSKTQQNVKAVFDAA 172
S+ N + +F+ A
Sbjct: 156 TSAALHHNTRELFEGA 171
>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|B Chain B, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|C Chain C, The Crystal Structure Of Rem1 In Complex With Gdp
pdb|2NZJ|D Chain D, The Crystal Structure Of Rem1 In Complex With Gdp
Length = 175
Score = 35.8 bits (81), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 31/135 (22%), Positives = 56/135 (41%), Gaps = 14/135 (10%)
Query: 40 DNFSANVVAEGTTVNLGLWDT--AGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLK 97
D + + +G L + DT A + D + + +G +V+ +S+ R S+E+ +
Sbjct: 39 DVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASE 98
Query: 98 KWIP-ELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIE 156
I H + VP++LVG K DL + + V + +IE
Sbjct: 99 LRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAV-----------VFDCKFIE 147
Query: 157 CSSKTQQNVKAVFDA 171
S+ Q NV +F+
Sbjct: 148 TSATLQHNVAELFEG 162
>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q72|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7P|B Chain B, Crystal Structure Of Rad G-Domain-Gtp Analog Complex
pdb|3Q7Q|A Chain A, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
pdb|3Q7Q|B Chain B, Crystal Structure Of Rad G-Domain Q148a-Gtp Analog Complex
Length = 166
Score = 35.0 bits (79), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 28/132 (21%), Positives = 54/132 (40%), Gaps = 12/132 (9%)
Query: 41 NFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWI 100
+ ++V +G +L ++D Q+ L D +V+ +S+ + S+E + +
Sbjct: 37 TYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRV 96
Query: 101 P-ELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSS 159
+ VP++LVG K DL + D V + +IE S+
Sbjct: 97 QLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAV-----------VFDCKFIETSA 145
Query: 160 KTQQNVKAVFDA 171
NV+A+F+
Sbjct: 146 ALHHNVQALFEG 157
>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase
pdb|2DPX|B Chain B, Crystal Structure Of Human Rad Gtpase
Length = 174
Score = 34.7 bits (78), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 28/132 (21%), Positives = 54/132 (40%), Gaps = 12/132 (9%)
Query: 41 NFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWI 100
+ ++V +G +L ++D Q+ L D +V+ +S+ + S+E + +
Sbjct: 42 TYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRV 101
Query: 101 P-ELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSS 159
+ VP++LVG K DL + D V + +IE S+
Sbjct: 102 QLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAV-----------VFDCKFIETSA 150
Query: 160 KTQQNVKAVFDA 171
NV+A+F+
Sbjct: 151 ALHHNVQALFEG 162
>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp
pdb|2GJS|B Chain B, The Crystal Structure Of Human Rrad In Complex With Gdp
Length = 176
Score = 34.7 bits (78), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 28/132 (21%), Positives = 54/132 (40%), Gaps = 12/132 (9%)
Query: 41 NFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWI 100
+ ++V +G +L ++D Q+ L D +V+ +S+ + S+E + +
Sbjct: 42 TYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRV 101
Query: 101 P-ELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSS 159
+ VP++LVG K DL + D V + +IE S+
Sbjct: 102 QLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAV-----------VFDCKFIETSA 150
Query: 160 KTQQNVKAVFDA 171
NV+A+F+
Sbjct: 151 ALHHNVQALFEG 162
>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive
(Gdp-3'p- Bound) Form
pdb|3E5H|A Chain A, Crystal Structure Of Rab28 Gtpase In The Active
(Gppnhp-Bound) Form
Length = 178
Score = 34.3 bits (77), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 5/75 (6%)
Query: 53 VNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKW---IPELQHYSPG 109
V L +WD GQ ++ GA +L + + + S+EN L+ W + ++ S
Sbjct: 56 VTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFEN-LEDWYTVVKKVSEESET 114
Query: 110 VPVV-LVGTKLDLRE 123
P+V LVG K+DL
Sbjct: 115 QPLVALVGNKIDLEH 129
>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC2|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
Length = 208
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 58/138 (42%), Gaps = 13/138 (9%)
Query: 1 MELLAKLACLFA-----TQVTSFLLYVLSVSGRSSIWDYIPTV-FDNFSANVVAEGTTVN 54
+++ A L C A T S L+ + + G + DY T + A V TTV+
Sbjct: 13 IDITATLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVS 72
Query: 55 --LGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPG--- 109
L L DTAG + Y + G +L F + S S+E+ K W L+ P
Sbjct: 73 VELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESC-KAWFELLKSARPDRER 131
Query: 110 -VPVVLVGTKLDLREDKH 126
+ VLV K DL +H
Sbjct: 132 PLRAVLVANKTDLPPQRH 149
>pdb|4ARZ|A Chain A, The Crystal Structure Of Gtr1p-Gtr2p Complexed With
Gtp-Gdp
Length = 310
Score = 31.6 bits (70), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 56/124 (45%), Gaps = 24/124 (19%)
Query: 19 LLYVLSVSGRSSIWDYIPTVFDNFSA-NVVAEGTTVN-------------LGLWDTAGQ- 63
LL S SG+SS+ I F N+SA + G T++ L LWD GQ
Sbjct: 10 LLMGRSGSGKSSMRSII---FSNYSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQD 66
Query: 64 ---EDY-NRLRPLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGT 117
E+Y + + ++ V + F + S +++ K + +L+ YSP + ++
Sbjct: 67 VFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLH 126
Query: 118 KLDL 121
K+DL
Sbjct: 127 KMDL 130
>pdb|3C5C|A Chain A, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|B Chain B, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|C Chain C, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
pdb|3C5C|D Chain D, Crystal Structure Of Human Ras-Like, Family 12 Protein In
Complex With Gdp
Length = 187
Score = 31.2 bits (69), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 68/149 (45%), Gaps = 22/149 (14%)
Query: 31 IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED-YNRLRPLSYRGADVFVLAFSL--- 86
I +Y P + D +S+ + V+L + DTA + N R L++ A F++ +S+
Sbjct: 47 ISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNCERYLNW--AHAFLVVYSVDSR 104
Query: 87 ---VSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGE 143
S +SY +L E Q +P +L+G KLD+ + + VT A+G
Sbjct: 105 QSFDSSSSYLELLALHAKETQR---SIPALLLGNKLDMAQYRQ----------VTKAEGV 151
Query: 144 ELRKQIGASYYIECSSKTQQNVKAVFDAA 172
L + G ++ + ++V+ VF A
Sbjct: 152 ALAGRFGCLFFEVSACLDFEHVQHVFHEA 180
>pdb|3EG4|A Chain A, Crystal Structure Of 2,3,4,5-Tetrahydropyridine-2-
Carboxylate N-Succinyltransferase From Brucella
Melitensis Biovar Abortus 2308
Length = 304
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 4/33 (12%)
Query: 17 SFLLYVLSV----SGRSSIWDYIPTVFDNFSAN 45
SF L + V G+SS WD +P+ FD ++AN
Sbjct: 91 SFRLNPMEVIKGGPGQSSWWDKVPSKFDGWTAN 123
>pdb|2V6B|A Chain A, Crystal Structure Of Lactate Dehydrogenase From
Deinococcus Radiodurans (Apo Form)
pdb|2V6B|B Chain B, Crystal Structure Of Lactate Dehydrogenase From
Deinococcus Radiodurans (Apo Form)
pdb|2V6B|C Chain C, Crystal Structure Of Lactate Dehydrogenase From
Deinococcus Radiodurans (Apo Form)
pdb|2V6B|D Chain D, Crystal Structure Of Lactate Dehydrogenase From
Deinococcus Radiodurans (Apo Form)
Length = 304
Score = 28.9 bits (63), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 7/67 (10%)
Query: 75 RGADVFVLAFSLVSRASYENVL------KKWIPEL-QHYSPGVPVVLVGTKLDLREDKHY 127
+ AD+F ++RA+ + VL + +L +PG PV+ GT LD +H
Sbjct: 91 KNADIFRELVPQITRAAPDAVLLVTSNPVDLLTDLATQLAPGQPVIGSGTVLDSARFRHL 150
Query: 128 LADHPGL 134
+A H G+
Sbjct: 151 MAQHAGV 157
>pdb|3A52|A Chain A, Crystal Structure Of Cold-Active Alkailne Phosphatase From
Psychrophile Shewanella Sp.
pdb|3A52|B Chain B, Crystal Structure Of Cold-Active Alkailne Phosphatase From
Psychrophile Shewanella Sp
Length = 400
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 45/112 (40%), Gaps = 20/112 (17%)
Query: 65 DYNRLRPLSYRGAD---------VFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLV 115
D N L L+ + D V ++ SL+ A + N + + E+Q ++ + VV
Sbjct: 195 DANTLSKLTQKSLDLLSQNEKGFVLLVEGSLIDWAGHNNDIATAMAEMQGFANAIEVV-- 252
Query: 116 GTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKA 167
+ Y+ HP + V TA IGA+ + +K + + A
Sbjct: 253 ---------EQYIRQHPDTLLVVTADHNTGGLSIGANGEYQWDTKLPKGISA 295
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,403,460
Number of Sequences: 62578
Number of extensions: 208476
Number of successful extensions: 1034
Number of sequences better than 100.0: 299
Number of HSP's better than 100.0 without gapping: 280
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 513
Number of HSP's gapped (non-prelim): 299
length of query: 207
length of database: 14,973,337
effective HSP length: 94
effective length of query: 113
effective length of database: 9,091,005
effective search space: 1027283565
effective search space used: 1027283565
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)