Query 028595
Match_columns 207
No_of_seqs 132 out of 1295
Neff 10.0
Searched_HMMs 46136
Date Fri Mar 29 13:59:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028595.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028595hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0084 GTPase Rab1/YPT1, smal 100.0 1.9E-43 4.1E-48 251.6 14.8 166 3-180 8-175 (205)
2 KOG0092 GTPase Rab5/YPT51 and 100.0 9.9E-43 2.2E-47 247.0 17.2 168 2-182 3-172 (200)
3 KOG0094 GTPase Rab6/YPT6/Ryh1, 100.0 1.1E-41 2.3E-46 241.9 13.7 165 4-181 22-189 (221)
4 cd01875 RhoG RhoG subfamily. 100.0 2.6E-40 5.7E-45 245.5 18.2 188 3-196 2-191 (191)
5 cd04133 Rop_like Rop subfamily 100.0 3.7E-40 8E-45 241.1 18.4 175 4-179 1-175 (176)
6 KOG0078 GTP-binding protein SE 100.0 2.1E-40 4.6E-45 239.2 15.3 166 3-181 11-178 (207)
7 KOG0098 GTPase Rab2, small G p 100.0 4.9E-41 1.1E-45 236.8 11.5 164 3-179 5-170 (216)
8 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 100.0 3.1E-39 6.8E-44 244.7 17.3 175 4-179 13-190 (232)
9 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 100.0 5.3E-39 1.1E-43 236.3 17.0 175 3-178 4-181 (182)
10 cd04121 Rab40 Rab40 subfamily. 100.0 5.4E-39 1.2E-43 237.4 16.3 165 2-179 4-169 (189)
11 cd04131 Rnd Rnd subfamily. Th 100.0 1.2E-38 2.5E-43 233.9 17.3 173 4-177 1-176 (178)
12 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 100.0 1.2E-38 2.6E-43 240.4 16.9 175 4-179 1-178 (222)
13 KOG0079 GTP-binding protein H- 100.0 3.1E-40 6.8E-45 224.4 6.8 167 1-180 5-172 (198)
14 KOG0080 GTPase Rab18, small G 100.0 4.8E-39 1E-43 221.4 11.8 166 3-181 10-178 (209)
15 KOG0394 Ras-related GTPase [Ge 100.0 6.6E-39 1.4E-43 225.6 12.1 168 4-181 9-182 (210)
16 cd04134 Rho3 Rho3 subfamily. 100.0 1.1E-37 2.3E-42 231.2 18.4 187 5-196 1-189 (189)
17 cd04144 Ras2 Ras2 subfamily. 100.0 2.2E-38 4.8E-43 235.0 14.7 178 6-196 1-190 (190)
18 KOG0087 GTPase Rab11/YPT3, sma 100.0 4.8E-38 1E-42 226.2 14.2 164 2-178 12-177 (222)
19 cd04120 Rab12 Rab12 subfamily. 100.0 1.1E-37 2.4E-42 232.4 15.9 161 6-179 2-165 (202)
20 cd01874 Cdc42 Cdc42 subfamily. 100.0 3.6E-37 7.7E-42 225.7 17.4 171 5-176 2-174 (175)
21 KOG0093 GTPase Rab3, small G p 100.0 6.7E-38 1.5E-42 212.7 12.2 167 2-181 19-187 (193)
22 KOG0393 Ras-related small GTPa 100.0 4.9E-37 1.1E-41 222.7 17.3 178 3-181 3-183 (198)
23 cd04132 Rho4_like Rho4-like su 100.0 3.5E-37 7.5E-42 228.0 16.0 185 5-196 1-187 (187)
24 PTZ00369 Ras-like protein; Pro 100.0 7.4E-37 1.6E-41 226.7 17.6 180 4-196 5-189 (189)
25 KOG0086 GTPase Rab4, small G p 100.0 7.9E-38 1.7E-42 213.9 9.9 165 2-179 7-173 (214)
26 cd04141 Rit_Rin_Ric Rit/Rin/Ri 100.0 6.8E-37 1.5E-41 223.6 15.4 164 4-180 2-167 (172)
27 cd01871 Rac1_like Rac1-like su 100.0 2.6E-36 5.7E-41 220.8 16.6 170 5-175 2-173 (174)
28 cd04107 Rab32_Rab38 Rab38/Rab3 100.0 3.1E-36 6.8E-41 225.4 16.4 164 5-180 1-171 (201)
29 cd04122 Rab14 Rab14 subfamily. 100.0 6.3E-36 1.4E-40 217.3 16.1 162 4-178 2-165 (166)
30 cd04110 Rab35 Rab35 subfamily. 100.0 1.3E-35 2.8E-40 221.7 16.7 164 3-179 5-169 (199)
31 KOG0091 GTPase Rab39, small G 100.0 1.6E-36 3.5E-41 209.5 10.3 163 3-178 7-174 (213)
32 smart00174 RHO Rho (Ras homolo 100.0 3.8E-35 8.2E-40 214.6 16.9 171 7-178 1-173 (174)
33 cd04175 Rap1 Rap1 subgroup. T 100.0 4E-35 8.6E-40 212.6 15.8 160 5-177 2-163 (164)
34 PF00071 Ras: Ras family; Int 100.0 2.5E-35 5.4E-40 213.1 14.4 159 6-177 1-161 (162)
35 cd04136 Rap_like Rap-like subf 100.0 4.4E-35 9.5E-40 211.9 15.5 159 5-176 2-162 (163)
36 cd04109 Rab28 Rab28 subfamily. 100.0 5.7E-35 1.2E-39 220.7 16.7 161 5-178 1-167 (215)
37 cd01867 Rab8_Rab10_Rab13_like 100.0 5.6E-35 1.2E-39 212.5 15.9 164 2-178 1-166 (167)
38 cd04125 RabA_like RabA-like su 100.0 7.5E-35 1.6E-39 215.8 16.0 162 5-179 1-164 (188)
39 cd01873 RhoBTB RhoBTB subfamil 100.0 1.2E-34 2.7E-39 215.2 17.0 168 4-175 2-194 (195)
40 cd04126 Rab20 Rab20 subfamily. 100.0 9.1E-35 2E-39 219.1 16.3 167 5-177 1-190 (220)
41 cd04117 Rab15 Rab15 subfamily. 100.0 9.4E-35 2E-39 210.1 15.7 158 5-175 1-160 (161)
42 cd04128 Spg1 Spg1p. Spg1p (se 100.0 1E-34 2.2E-39 213.8 16.0 167 5-180 1-169 (182)
43 KOG0095 GTPase Rab30, small G 100.0 1.7E-35 3.7E-40 201.7 10.6 162 3-177 6-169 (213)
44 cd01865 Rab3 Rab3 subfamily. 100.0 1.6E-34 3.5E-39 209.7 16.3 160 5-177 2-163 (165)
45 cd04127 Rab27A Rab27a subfamil 100.0 1E-34 2.2E-39 213.4 15.0 163 3-178 3-178 (180)
46 cd04112 Rab26 Rab26 subfamily. 100.0 2E-34 4.3E-39 214.0 16.0 162 5-179 1-165 (191)
47 PLN03071 GTP-binding nuclear p 100.0 2.5E-34 5.5E-39 217.5 16.7 162 3-179 12-174 (219)
48 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 100.0 3.8E-34 8.2E-39 207.8 15.9 161 4-177 2-164 (166)
49 KOG0088 GTPase Rab21, small G 100.0 1.4E-35 3.1E-40 203.9 7.7 164 3-179 12-177 (218)
50 cd04135 Tc10 TC10 subfamily. 100.0 8.5E-34 1.8E-38 207.4 17.6 172 5-177 1-174 (174)
51 cd04176 Rap2 Rap2 subgroup. T 100.0 4.5E-34 9.7E-39 206.8 15.7 160 4-176 1-162 (163)
52 cd00877 Ran Ran (Ras-related n 100.0 7E-34 1.5E-38 206.6 16.7 161 5-180 1-162 (166)
53 cd04119 RJL RJL (RabJ-Like) su 100.0 4.5E-34 9.8E-39 207.3 15.4 161 5-178 1-168 (168)
54 cd04138 H_N_K_Ras_like H-Ras/N 100.0 6.8E-34 1.5E-38 205.2 15.6 159 4-176 1-161 (162)
55 KOG0081 GTPase Rab27, small G 100.0 5.1E-35 1.1E-39 201.3 9.1 165 3-180 8-184 (219)
56 cd04130 Wrch_1 Wrch-1 subfamil 100.0 1.4E-33 3E-38 206.3 17.2 169 5-174 1-171 (173)
57 smart00173 RAS Ras subfamily o 100.0 8E-34 1.7E-38 205.6 15.4 160 5-177 1-162 (164)
58 cd04106 Rab23_lke Rab23-like s 100.0 7.1E-34 1.5E-38 205.4 14.8 158 5-175 1-161 (162)
59 cd04108 Rab36_Rab34 Rab34/Rab3 100.0 1E-33 2.3E-38 206.4 15.7 163 5-178 1-166 (170)
60 cd04118 Rab24 Rab24 subfamily. 100.0 1.9E-33 4.2E-38 209.0 17.4 166 5-179 1-168 (193)
61 cd04140 ARHI_like ARHI subfami 100.0 1E-33 2.3E-38 205.4 15.3 158 5-175 2-163 (165)
62 cd04124 RabL2 RabL2 subfamily. 100.0 1.9E-33 4.1E-38 203.3 16.4 159 5-179 1-160 (161)
63 PLN03110 Rab GTPase; Provision 100.0 1.7E-33 3.6E-38 212.7 16.2 164 2-178 10-175 (216)
64 cd01866 Rab2 Rab2 subfamily. 100.0 2.2E-33 4.7E-38 204.3 16.2 164 2-178 2-167 (168)
65 cd04129 Rho2 Rho2 subfamily. 100.0 5.5E-33 1.2E-37 205.6 18.1 176 4-180 1-176 (187)
66 KOG0083 GTPase Rab26/Rab37, sm 100.0 2.1E-34 4.5E-39 193.0 9.3 159 8-179 1-162 (192)
67 cd01864 Rab19 Rab19 subfamily. 100.0 1.9E-33 4.1E-38 204.0 15.2 161 3-175 2-164 (165)
68 smart00176 RAN Ran (Ras-relate 100.0 1.8E-33 3.9E-38 209.5 15.0 155 10-179 1-156 (200)
69 cd01868 Rab11_like Rab11-like. 100.0 2.7E-33 5.9E-38 203.1 15.6 161 3-176 2-164 (165)
70 cd04111 Rab39 Rab39 subfamily. 100.0 1.9E-33 4E-38 211.7 15.2 163 4-179 2-168 (211)
71 cd01870 RhoA_like RhoA-like su 100.0 4.9E-33 1.1E-37 203.6 17.1 172 4-176 1-174 (175)
72 cd04116 Rab9 Rab9 subfamily. 100.0 2.9E-33 6.4E-38 203.9 15.5 160 3-175 4-169 (170)
73 cd04145 M_R_Ras_like M-Ras/R-R 100.0 2.9E-33 6.3E-38 202.5 15.3 160 4-176 2-163 (164)
74 KOG0395 Ras-related GTPase [Ge 100.0 9.8E-33 2.1E-37 204.1 17.7 163 4-179 3-167 (196)
75 cd04103 Centaurin_gamma Centau 100.0 4.4E-33 9.6E-38 200.7 15.0 155 5-175 1-157 (158)
76 cd04113 Rab4 Rab4 subfamily. 100.0 5.6E-33 1.2E-37 200.7 15.0 158 5-175 1-160 (161)
77 cd04143 Rhes_like Rhes_like su 100.0 1.1E-32 2.3E-37 211.5 16.0 163 5-179 1-173 (247)
78 PLN03108 Rab family protein; P 100.0 1.1E-32 2.4E-37 207.4 15.4 163 4-179 6-170 (210)
79 cd01892 Miro2 Miro2 subfamily. 100.0 1.1E-32 2.3E-37 200.9 14.8 163 4-179 4-168 (169)
80 cd04146 RERG_RasL11_like RERG/ 100.0 9.1E-33 2E-37 200.4 14.3 159 6-177 1-164 (165)
81 cd04115 Rab33B_Rab33A Rab33B/R 100.0 1.7E-32 3.7E-37 200.0 15.3 160 4-176 2-168 (170)
82 cd04177 RSR1 RSR1 subgroup. R 100.0 2.9E-32 6.2E-37 198.4 16.2 161 5-177 2-164 (168)
83 cd04148 RGK RGK subfamily. Th 100.0 1.5E-32 3.3E-37 208.0 14.6 161 5-180 1-166 (221)
84 cd04101 RabL4 RabL4 (Rab-like4 100.0 2.5E-32 5.4E-37 197.7 15.1 159 5-176 1-163 (164)
85 KOG0097 GTPase Rab14, small G 100.0 3.5E-33 7.5E-38 189.0 9.7 164 3-179 10-175 (215)
86 cd04142 RRP22 RRP22 subfamily. 100.0 3.9E-32 8.4E-37 202.5 16.3 164 5-181 1-178 (198)
87 smart00175 RAB Rab subfamily o 100.0 4.2E-32 9.2E-37 196.3 15.7 161 5-178 1-163 (164)
88 cd01860 Rab5_related Rab5-rela 100.0 9E-32 2E-36 194.6 15.6 160 4-176 1-162 (163)
89 cd01861 Rab6 Rab6 subfamily. 100.0 1.1E-31 2.4E-36 193.7 15.2 158 5-175 1-160 (161)
90 PLN03118 Rab family protein; P 100.0 1.6E-31 3.5E-36 201.3 16.7 165 3-180 13-180 (211)
91 cd00157 Rho Rho (Ras homology) 100.0 3.1E-31 6.7E-36 193.1 16.6 169 5-174 1-170 (171)
92 cd01862 Rab7 Rab7 subfamily. 100.0 3.5E-31 7.5E-36 193.1 15.9 164 5-180 1-170 (172)
93 cd01863 Rab18 Rab18 subfamily. 100.0 5.2E-31 1.1E-35 190.3 16.0 157 5-175 1-160 (161)
94 cd04123 Rab21 Rab21 subfamily. 100.0 1.1E-30 2.3E-35 188.5 15.7 159 5-176 1-161 (162)
95 cd04139 RalA_RalB RalA/RalB su 100.0 1.2E-30 2.6E-35 188.7 15.7 160 5-177 1-162 (164)
96 cd04137 RheB Rheb (Ras Homolog 100.0 1.1E-30 2.3E-35 192.1 15.2 176 5-195 2-179 (180)
97 cd01893 Miro1 Miro1 subfamily. 100.0 3.3E-30 7.3E-35 187.2 15.0 164 5-178 1-165 (166)
98 PLN00223 ADP-ribosylation fact 100.0 1.3E-30 2.8E-35 191.9 12.4 156 3-178 16-179 (181)
99 cd04114 Rab30 Rab30 subfamily. 100.0 7.9E-30 1.7E-34 185.5 16.1 161 3-176 6-168 (169)
100 cd04147 Ras_dva Ras-dva subfam 100.0 6.4E-30 1.4E-34 190.8 15.0 161 6-179 1-165 (198)
101 cd00876 Ras Ras family. The R 100.0 5.5E-30 1.2E-34 184.4 13.5 158 6-176 1-160 (160)
102 cd04149 Arf6 Arf6 subfamily. 100.0 1.9E-30 4.2E-35 188.8 11.1 155 3-174 8-167 (168)
103 cd04162 Arl9_Arfrp2_like Arl9/ 100.0 7.3E-31 1.6E-35 190.3 8.5 152 7-174 2-163 (164)
104 cd04158 ARD1 ARD1 subfamily. 100.0 4.6E-30 1E-34 187.0 12.7 157 6-180 1-164 (169)
105 KOG4252 GTP-binding protein [S 100.0 1.5E-32 3.2E-37 192.8 -1.7 168 1-181 17-185 (246)
106 cd00154 Rab Rab family. Rab G 100.0 1.7E-29 3.6E-34 181.1 14.0 156 5-173 1-158 (159)
107 PTZ00133 ADP-ribosylation fact 100.0 9.1E-30 2E-34 187.5 12.5 157 3-179 16-180 (182)
108 smart00177 ARF ARF-like small 100.0 1.5E-29 3.2E-34 185.4 12.8 157 3-177 12-174 (175)
109 cd04152 Arl4_Arl7 Arl4/Arl7 su 100.0 1.3E-29 2.9E-34 186.9 12.6 163 4-181 3-174 (183)
110 PTZ00132 GTP-binding nuclear p 100.0 5.9E-29 1.3E-33 187.9 16.2 163 4-181 9-172 (215)
111 cd04150 Arf1_5_like Arf1-Arf5- 100.0 6.5E-30 1.4E-34 184.4 10.3 152 5-174 1-158 (159)
112 PTZ00099 rab6; Provisional 100.0 4.9E-28 1.1E-32 177.0 17.2 142 28-181 3-146 (176)
113 cd04102 RabL3 RabL3 (Rab-like3 100.0 1.2E-28 2.5E-33 183.6 12.4 149 5-162 1-175 (202)
114 cd04154 Arl2 Arl2 subfamily. 100.0 2.7E-28 5.9E-33 178.3 12.4 152 4-174 14-172 (173)
115 PLN00023 GTP-binding protein; 100.0 7E-28 1.5E-32 188.0 13.3 145 4-154 21-192 (334)
116 cd04157 Arl6 Arl6 subfamily. 100.0 3.8E-28 8.3E-33 175.3 10.1 152 6-174 1-161 (162)
117 cd04153 Arl5_Arl8 Arl5/Arl8 su 100.0 1.8E-27 3.9E-32 174.1 12.2 152 4-174 15-173 (174)
118 cd04161 Arl2l1_Arl13_like Arl2 99.9 5.8E-28 1.2E-32 175.6 8.9 157 6-174 1-166 (167)
119 cd04151 Arl1 Arl1 subfamily. 99.9 2.5E-27 5.5E-32 170.6 11.3 151 6-174 1-157 (158)
120 cd04156 ARLTS1 ARLTS1 subfamil 99.9 6.5E-27 1.4E-31 168.7 11.4 151 6-174 1-159 (160)
121 cd00879 Sar1 Sar1 subfamily. 99.9 9.8E-27 2.1E-31 172.5 12.2 154 4-175 19-189 (190)
122 cd00878 Arf_Arl Arf (ADP-ribos 99.9 1.9E-26 4.2E-31 165.9 11.3 151 6-174 1-157 (158)
123 cd04160 Arfrp1 Arfrp1 subfamil 99.9 2.4E-26 5.2E-31 166.8 11.7 152 6-174 1-166 (167)
124 PF00025 Arf: ADP-ribosylation 99.9 3.1E-26 6.6E-31 167.7 12.1 158 2-176 12-175 (175)
125 cd01890 LepA LepA subfamily. 99.9 4.3E-26 9.3E-31 167.3 11.2 156 5-177 1-177 (179)
126 smart00178 SAR Sar1p-like memb 99.9 1.3E-25 2.8E-30 165.8 12.2 154 4-175 17-183 (184)
127 KOG0070 GTP-binding ADP-ribosy 99.9 1.5E-24 3.2E-29 154.0 16.1 159 4-179 17-180 (181)
128 KOG0073 GTP-binding ADP-ribosy 99.9 4.7E-25 1E-29 152.8 12.7 163 3-178 15-179 (185)
129 cd04159 Arl10_like Arl10-like 99.9 4.1E-25 8.8E-30 158.4 12.8 150 7-174 2-158 (159)
130 KOG1673 Ras GTPases [General f 99.9 1.3E-24 2.8E-29 149.4 13.6 165 4-180 20-189 (205)
131 COG1100 GTPase SAR1 and relate 99.9 6.4E-25 1.4E-29 166.2 12.9 175 5-181 6-189 (219)
132 TIGR02528 EutP ethanolamine ut 99.9 7.7E-26 1.7E-30 160.0 7.3 136 5-173 1-141 (142)
133 KOG0075 GTP-binding ADP-ribosy 99.9 3.3E-24 7.2E-29 146.1 13.1 155 4-177 20-182 (186)
134 cd01897 NOG NOG1 is a nucleola 99.9 2.6E-24 5.5E-29 156.3 13.0 155 6-177 2-168 (168)
135 KOG3883 Ras family small GTPas 99.9 3.2E-24 6.9E-29 147.1 12.3 170 1-183 6-181 (198)
136 TIGR00231 small_GTP small GTP- 99.9 7.6E-24 1.6E-28 151.3 13.1 156 4-172 1-159 (161)
137 cd01898 Obg Obg subfamily. Th 99.9 3.7E-24 8E-29 155.7 11.3 155 6-175 2-169 (170)
138 cd04155 Arl3 Arl3 subfamily. 99.9 1.2E-23 2.5E-28 153.6 12.7 150 4-174 14-172 (173)
139 cd04171 SelB SelB subfamily. 99.9 2.4E-23 5.3E-28 150.3 10.7 152 6-174 2-163 (164)
140 PRK12299 obgE GTPase CgtA; Rev 99.9 2.9E-23 6.2E-28 165.3 11.7 164 3-180 157-331 (335)
141 KOG0071 GTP-binding ADP-ribosy 99.9 2.9E-22 6.3E-27 135.6 12.8 158 3-177 16-178 (180)
142 cd01878 HflX HflX subfamily. 99.9 6.3E-23 1.4E-27 153.7 9.4 152 4-176 41-204 (204)
143 KOG0096 GTPase Ran/TC4/GSP1 (n 99.9 7.3E-23 1.6E-27 145.3 8.9 162 4-180 10-172 (216)
144 TIGR00436 era GTP-binding prot 99.9 1.3E-22 2.8E-27 158.2 11.0 156 6-180 2-167 (270)
145 cd01879 FeoB Ferrous iron tran 99.9 2.4E-22 5.2E-27 144.3 11.6 147 9-176 1-156 (158)
146 cd01887 IF2_eIF5B IF2/eIF5B (i 99.9 3.3E-22 7.1E-27 145.1 12.0 158 6-177 2-166 (168)
147 TIGR02729 Obg_CgtA Obg family 99.9 4.7E-22 1E-26 158.2 12.5 159 3-176 156-328 (329)
148 cd01891 TypA_BipA TypA (tyrosi 99.9 1.1E-22 2.5E-27 151.2 8.4 146 5-165 3-170 (194)
149 cd00882 Ras_like_GTPase Ras-li 99.9 8.2E-22 1.8E-26 139.5 11.8 152 9-173 1-156 (157)
150 PRK04213 GTP-binding protein; 99.9 1E-22 2.2E-27 152.2 7.2 154 4-179 9-194 (201)
151 PF08477 Miro: Miro-like prote 99.9 1.6E-22 3.5E-27 138.8 7.6 114 6-120 1-119 (119)
152 PRK15494 era GTPase Era; Provi 99.9 7.1E-22 1.5E-26 158.2 12.1 156 5-180 53-219 (339)
153 PRK03003 GTP-binding protein D 99.9 6.2E-22 1.3E-26 165.3 11.3 175 4-204 38-222 (472)
154 TIGR01393 lepA GTP-binding pro 99.9 8.2E-22 1.8E-26 167.6 11.9 160 4-180 3-183 (595)
155 PRK03003 GTP-binding protein D 99.9 7.5E-22 1.6E-26 164.8 11.0 159 4-177 211-382 (472)
156 cd01894 EngA1 EngA1 subfamily. 99.9 1.2E-21 2.5E-26 140.4 9.8 146 8-175 1-156 (157)
157 TIGR00450 mnmE_trmE_thdF tRNA 99.9 1.8E-21 4E-26 160.3 12.1 150 4-179 203-362 (442)
158 PRK15467 ethanolamine utilizat 99.9 8.7E-22 1.9E-26 141.8 7.6 143 5-179 2-149 (158)
159 TIGR03156 GTP_HflX GTP-binding 99.9 2.4E-21 5.3E-26 155.5 10.3 151 4-175 189-350 (351)
160 cd01881 Obg_like The Obg-like 99.9 2.2E-21 4.8E-26 141.7 9.0 153 9-175 1-175 (176)
161 PF02421 FeoB_N: Ferrous iron 99.9 1.3E-21 2.9E-26 138.7 6.9 147 5-172 1-156 (156)
162 PRK05291 trmE tRNA modificatio 99.9 4.2E-21 9.1E-26 159.0 10.9 147 4-178 215-371 (449)
163 TIGR03594 GTPase_EngA ribosome 99.9 1.6E-20 3.5E-25 155.6 14.2 156 4-177 172-344 (429)
164 PRK00093 GTP-binding protein D 99.8 1.3E-20 2.8E-25 156.4 12.9 150 5-176 2-161 (435)
165 PRK12297 obgE GTPase CgtA; Rev 99.8 2.1E-20 4.6E-25 152.6 13.6 159 4-180 158-330 (424)
166 cd00881 GTP_translation_factor 99.8 9.9E-21 2.1E-25 139.7 10.5 159 6-177 1-187 (189)
167 KOG4423 GTP-binding protein-li 99.8 4.7E-23 1E-27 145.9 -2.7 167 2-179 23-196 (229)
168 PRK00089 era GTPase Era; Revie 99.8 1.9E-20 4.1E-25 147.7 11.3 160 4-180 5-174 (292)
169 cd01889 SelB_euk SelB subfamil 99.8 1.2E-20 2.7E-25 140.1 9.6 162 5-180 1-189 (192)
170 cd04164 trmE TrmE (MnmE, ThdF, 99.8 3.7E-20 8.1E-25 132.5 11.7 145 5-176 2-156 (157)
171 TIGR00487 IF-2 translation ini 99.8 3.4E-20 7.4E-25 157.2 13.4 152 4-174 87-247 (587)
172 cd04163 Era Era subfamily. Er 99.8 2.3E-20 5.1E-25 134.5 10.3 157 4-175 3-167 (168)
173 PRK00454 engB GTP-binding prot 99.8 2.6E-20 5.5E-25 138.6 10.5 160 3-178 23-195 (196)
174 TIGR03594 GTPase_EngA ribosome 99.8 6.1E-20 1.3E-24 152.1 13.1 152 6-179 1-162 (429)
175 KOG0072 GTP-binding ADP-ribosy 99.8 1.2E-19 2.6E-24 123.5 11.6 159 3-179 17-181 (182)
176 PRK12296 obgE GTPase CgtA; Rev 99.8 5.7E-20 1.2E-24 151.9 11.7 162 3-180 158-343 (500)
177 PRK11058 GTPase HflX; Provisio 99.8 1.1E-19 2.4E-24 149.1 12.0 156 5-178 198-363 (426)
178 cd01895 EngA2 EngA2 subfamily. 99.8 1.9E-19 4.1E-24 130.8 11.9 155 4-175 2-173 (174)
179 KOG0074 GTP-binding ADP-ribosy 99.8 7.5E-20 1.6E-24 124.1 8.5 153 4-175 17-177 (185)
180 PRK05433 GTP-binding protein L 99.8 1.1E-19 2.4E-24 154.9 11.6 162 2-180 5-187 (600)
181 CHL00189 infB translation init 99.8 1.2E-19 2.7E-24 156.1 11.7 159 4-176 244-409 (742)
182 TIGR00437 feoB ferrous iron tr 99.8 1.5E-19 3.3E-24 153.9 11.8 145 11-176 1-154 (591)
183 TIGR03598 GTPase_YsxC ribosome 99.8 4.8E-20 1E-24 135.4 7.5 148 3-166 17-179 (179)
184 TIGR00475 selB selenocysteine- 99.8 2E-19 4.3E-24 153.0 12.2 156 6-179 2-168 (581)
185 PRK12298 obgE GTPase CgtA; Rev 99.8 2.9E-19 6.2E-24 145.1 11.7 162 4-179 159-335 (390)
186 COG1159 Era GTPase [General fu 99.8 1.2E-19 2.6E-24 138.6 8.8 162 4-180 6-175 (298)
187 PRK05306 infB translation init 99.8 5.3E-19 1.2E-23 153.4 13.6 154 4-175 290-450 (787)
188 COG1160 Predicted GTPases [Gen 99.8 2.7E-19 5.8E-24 143.7 10.8 176 5-205 4-190 (444)
189 PRK09518 bifunctional cytidyla 99.8 1.9E-19 4.1E-24 156.9 10.5 156 4-178 450-622 (712)
190 PRK09518 bifunctional cytidyla 99.8 7.9E-19 1.7E-23 153.0 13.9 153 4-178 275-437 (712)
191 cd04105 SR_beta Signal recogni 99.8 3.1E-19 6.7E-24 133.5 8.8 117 6-124 2-124 (203)
192 KOG0076 GTP-binding ADP-ribosy 99.8 1.9E-19 4.1E-24 126.3 5.5 159 5-179 18-189 (197)
193 PRK09554 feoB ferrous iron tra 99.8 2.4E-18 5.2E-23 149.9 13.1 152 4-176 3-167 (772)
194 cd01888 eIF2_gamma eIF2-gamma 99.8 1.2E-18 2.7E-23 130.4 9.4 113 53-180 83-202 (203)
195 PRK00093 GTP-binding protein D 99.8 2.5E-18 5.5E-23 142.7 12.1 159 4-177 173-344 (435)
196 TIGR00491 aIF-2 translation in 99.8 1.7E-18 3.8E-23 146.7 11.1 161 6-176 6-215 (590)
197 PF10662 PduV-EutP: Ethanolami 99.8 6E-19 1.3E-23 122.6 6.4 138 4-173 1-142 (143)
198 cd01896 DRG The developmentall 99.8 1.1E-17 2.4E-22 127.5 13.7 150 5-176 1-225 (233)
199 cd00880 Era_like Era (E. coli 99.8 3.3E-18 7.2E-23 122.1 9.3 150 9-175 1-162 (163)
200 COG2229 Predicted GTPase [Gene 99.8 1.1E-17 2.4E-22 118.9 11.6 153 4-175 10-176 (187)
201 PF00009 GTP_EFTU: Elongation 99.7 3.8E-18 8.2E-23 126.3 6.7 160 4-177 3-187 (188)
202 cd01876 YihA_EngB The YihA (En 99.7 1E-17 2.3E-22 121.0 8.8 154 6-175 1-169 (170)
203 PRK10218 GTP-binding protein; 99.7 3.8E-17 8.2E-22 139.0 12.5 164 2-180 3-198 (607)
204 COG1160 Predicted GTPases [Gen 99.7 2.2E-16 4.8E-21 127.0 15.2 163 4-179 178-353 (444)
205 PRK10512 selenocysteinyl-tRNA- 99.7 4.4E-17 9.6E-22 139.3 11.4 155 6-178 2-167 (614)
206 KOG1707 Predicted Ras related/ 99.7 4.1E-18 8.9E-23 139.6 4.7 165 3-179 8-177 (625)
207 TIGR00483 EF-1_alpha translati 99.7 1.8E-17 3.8E-22 137.1 7.4 157 4-169 7-199 (426)
208 KOG0077 Vesicle coat complex C 99.7 1.2E-17 2.6E-22 116.4 5.2 156 3-175 19-191 (193)
209 COG0486 ThdF Predicted GTPase 99.7 1.1E-16 2.3E-21 129.2 11.1 152 4-179 217-378 (454)
210 PRK04004 translation initiatio 99.7 1.3E-16 2.9E-21 135.7 11.4 161 5-175 7-216 (586)
211 TIGR01394 TypA_BipA GTP-bindin 99.7 6.4E-17 1.4E-21 137.7 9.1 161 5-180 2-194 (594)
212 PRK12317 elongation factor 1-a 99.7 9.3E-17 2E-21 132.8 9.1 158 4-169 6-197 (425)
213 KOG1423 Ras-like GTPase ERA [C 99.7 8.6E-17 1.9E-21 122.8 7.9 173 4-180 72-274 (379)
214 cd04167 Snu114p Snu114p subfam 99.7 6.7E-17 1.5E-21 121.9 6.8 113 5-122 1-136 (213)
215 COG0218 Predicted GTPase [Gene 99.7 4.3E-16 9.4E-21 113.1 9.9 156 4-178 24-198 (200)
216 COG0370 FeoB Fe2+ transport sy 99.7 3.4E-16 7.3E-21 131.3 10.2 155 4-179 3-166 (653)
217 TIGR03680 eif2g_arch translati 99.7 2.3E-16 5.1E-21 129.5 8.9 159 4-179 4-198 (406)
218 cd04166 CysN_ATPS CysN_ATPS su 99.7 3E-16 6.5E-21 117.9 7.7 153 6-168 1-185 (208)
219 PRK04000 translation initiatio 99.7 4.4E-16 9.6E-21 127.9 9.1 160 4-179 9-203 (411)
220 cd04165 GTPBP1_like GTPBP1-lik 99.7 7E-16 1.5E-20 116.9 9.3 155 6-173 1-219 (224)
221 cd04168 TetM_like Tet(M)-like 99.6 8.8E-16 1.9E-20 117.3 9.5 113 6-123 1-130 (237)
222 cd04104 p47_IIGP_like p47 (47- 99.6 8.8E-16 1.9E-20 114.4 9.1 170 4-181 1-188 (197)
223 cd01884 EF_Tu EF-Tu subfamily. 99.6 1.2E-15 2.5E-20 113.3 8.7 149 5-165 3-171 (195)
224 PF04670 Gtr1_RagA: Gtr1/RagA 99.6 7.3E-16 1.6E-20 116.5 7.2 168 6-181 1-180 (232)
225 KOG1489 Predicted GTP-binding 99.6 3E-15 6.6E-20 115.0 9.9 155 4-174 196-364 (366)
226 cd01899 Ygr210 Ygr210 subfamil 99.6 9.3E-15 2E-19 115.8 10.8 80 7-87 1-110 (318)
227 cd01885 EF2 EF2 (for archaea a 99.6 9.8E-15 2.1E-19 110.3 10.2 113 5-122 1-138 (222)
228 PRK12736 elongation factor Tu; 99.6 5.2E-15 1.1E-19 121.1 9.0 164 4-179 12-203 (394)
229 cd01850 CDC_Septin CDC/Septin. 99.6 1.1E-14 2.4E-19 113.6 10.4 145 3-161 3-186 (276)
230 cd01883 EF1_alpha Eukaryotic e 99.6 2.3E-15 5E-20 114.0 5.7 150 6-166 1-194 (219)
231 PRK12735 elongation factor Tu; 99.6 8.1E-15 1.8E-19 120.1 9.1 162 4-177 12-203 (396)
232 PRK13351 elongation factor G; 99.6 1.1E-14 2.4E-19 127.1 10.0 114 2-123 6-139 (687)
233 TIGR00485 EF-Tu translation el 99.6 8.9E-15 1.9E-19 119.8 8.8 148 4-163 12-179 (394)
234 COG0481 LepA Membrane GTPase L 99.6 1.3E-14 2.9E-19 116.8 9.0 167 2-185 7-194 (603)
235 KOG0462 Elongation factor-type 99.6 3.6E-14 7.8E-19 116.0 11.6 165 4-183 60-241 (650)
236 cd04169 RF3 RF3 subfamily. Pe 99.6 1.8E-14 3.9E-19 111.9 8.9 115 5-124 3-138 (267)
237 TIGR00157 ribosome small subun 99.5 1.2E-13 2.5E-18 106.1 12.6 96 64-174 24-120 (245)
238 COG0536 Obg Predicted GTPase [ 99.5 4.3E-14 9.4E-19 109.9 9.5 164 4-180 159-336 (369)
239 COG0532 InfB Translation initi 99.5 2.5E-13 5.5E-18 111.3 14.4 150 7-177 8-170 (509)
240 PRK00741 prfC peptide chain re 99.5 4.9E-14 1.1E-18 118.7 10.4 116 3-123 9-145 (526)
241 CHL00071 tufA elongation facto 99.5 5.5E-14 1.2E-18 115.7 8.7 149 4-164 12-180 (409)
242 COG4917 EutP Ethanolamine util 99.5 1.5E-14 3.3E-19 96.5 3.9 139 4-174 1-143 (148)
243 COG2262 HflX GTPases [General 99.5 3.9E-13 8.4E-18 107.0 11.4 157 4-179 192-358 (411)
244 PF09439 SRPRB: Signal recogni 99.5 1.3E-14 2.9E-19 105.2 2.2 118 4-125 3-128 (181)
245 cd04170 EF-G_bact Elongation f 99.5 1.2E-13 2.7E-18 107.7 7.7 114 6-124 1-131 (268)
246 TIGR00503 prfC peptide chain r 99.5 4.6E-13 1E-17 112.9 11.3 116 3-123 10-146 (527)
247 PRK00049 elongation factor Tu; 99.5 3.5E-13 7.6E-18 110.4 9.7 162 4-177 12-203 (396)
248 cd01886 EF-G Elongation factor 99.5 1.4E-13 3E-18 107.1 6.4 114 6-124 1-131 (270)
249 PLN03126 Elongation factor Tu; 99.4 3.5E-13 7.6E-18 112.3 8.6 149 4-164 81-249 (478)
250 TIGR02034 CysN sulfate adenyly 99.4 4.4E-13 9.5E-18 110.2 8.8 153 5-167 1-187 (406)
251 PRK09602 translation-associate 99.4 1.1E-12 2.3E-17 107.1 10.9 82 5-87 2-113 (396)
252 PLN03127 Elongation factor Tu; 99.4 9.1E-13 2E-17 109.2 10.7 163 4-179 61-254 (447)
253 KOG0705 GTPase-activating prot 99.4 8E-13 1.7E-17 108.1 10.0 160 4-179 30-191 (749)
254 COG1084 Predicted GTPase [Gene 99.4 8E-13 1.7E-17 102.4 9.3 156 4-179 168-338 (346)
255 KOG1707 Predicted Ras related/ 99.4 1.5E-12 3.4E-17 107.3 11.3 161 5-181 426-587 (625)
256 smart00010 small_GTPase Small 99.4 5.4E-14 1.2E-18 96.7 2.4 113 5-166 1-115 (124)
257 COG1163 DRG Predicted GTPase [ 99.4 4.1E-12 8.8E-17 98.3 12.8 152 5-177 64-289 (365)
258 PRK05124 cysN sulfate adenylyl 99.4 5.6E-13 1.2E-17 111.3 8.8 155 4-168 27-216 (474)
259 PF01926 MMR_HSR1: 50S ribosom 99.4 9.2E-13 2E-17 89.8 8.0 105 6-118 1-116 (116)
260 TIGR00484 EF-G translation elo 99.4 1.2E-12 2.6E-17 114.3 10.6 116 2-124 8-142 (689)
261 KOG3886 GTP-binding protein [S 99.4 3.9E-13 8.4E-18 99.2 6.1 171 1-181 1-182 (295)
262 PLN00043 elongation factor 1-a 99.4 1.3E-12 2.7E-17 108.4 8.9 155 4-167 7-203 (447)
263 KOG0090 Signal recognition par 99.4 1.1E-11 2.4E-16 90.5 12.6 112 5-123 39-159 (238)
264 PRK14845 translation initiatio 99.4 6.2E-12 1.4E-16 112.2 13.1 149 17-175 473-671 (1049)
265 PRK05506 bifunctional sulfate 99.4 6.4E-13 1.4E-17 115.0 6.8 154 4-167 24-211 (632)
266 KOG1145 Mitochondrial translat 99.4 9.8E-12 2.1E-16 102.0 11.9 148 7-176 156-315 (683)
267 PTZ00141 elongation factor 1- 99.3 3.2E-12 6.9E-17 106.1 8.2 153 4-167 7-203 (446)
268 PTZ00327 eukaryotic translatio 99.3 3.3E-12 7.2E-17 105.9 8.2 164 4-179 34-235 (460)
269 PRK12739 elongation factor G; 99.3 9.8E-12 2.1E-16 108.6 11.5 115 2-123 6-139 (691)
270 KOG1191 Mitochondrial GTPase [ 99.3 3.1E-12 6.7E-17 103.7 7.1 161 4-178 268-451 (531)
271 PRK09866 hypothetical protein; 99.3 1.3E-11 2.7E-16 104.1 10.8 111 53-175 230-351 (741)
272 PRK12740 elongation factor G; 99.3 5E-12 1.1E-16 110.3 8.5 107 10-123 1-126 (668)
273 cd01852 AIG1 AIG1 (avrRpt2-ind 99.3 2.2E-11 4.9E-16 90.6 10.8 163 5-178 1-185 (196)
274 COG3596 Predicted GTPase [Gene 99.3 3.4E-12 7.3E-17 96.9 5.2 172 4-180 39-225 (296)
275 TIGR00490 aEF-2 translation el 99.3 3.4E-12 7.3E-17 111.8 5.1 116 3-123 18-152 (720)
276 COG1217 TypA Predicted membran 99.3 5.8E-11 1.3E-15 95.9 11.3 166 1-180 2-198 (603)
277 KOG1490 GTP-binding protein CR 99.3 4E-12 8.6E-17 103.3 4.7 186 5-205 169-370 (620)
278 PRK00007 elongation factor G; 99.2 4.7E-11 1E-15 104.3 8.0 142 2-162 8-171 (693)
279 cd00066 G-alpha G protein alph 99.2 2.7E-10 5.8E-15 90.8 11.3 147 32-179 132-313 (317)
280 PRK00098 GTPase RsgA; Reviewed 99.2 4.7E-10 1E-14 88.7 11.5 87 73-173 77-163 (298)
281 TIGR02836 spore_IV_A stage IV 99.1 4.4E-10 9.5E-15 90.5 9.8 158 4-177 17-237 (492)
282 cd01854 YjeQ_engC YjeQ/EngC. 99.1 3E-09 6.5E-14 83.7 12.3 88 71-174 73-161 (287)
283 smart00275 G_alpha G protein a 99.1 1.5E-09 3.3E-14 87.2 10.4 125 53-179 184-336 (342)
284 TIGR00101 ureG urease accessor 99.1 8.4E-10 1.8E-14 82.2 8.2 102 53-177 92-196 (199)
285 TIGR00991 3a0901s02IAP34 GTP-b 99.0 7.5E-10 1.6E-14 86.7 7.9 116 4-123 38-167 (313)
286 cd01882 BMS1 Bms1. Bms1 is an 99.0 8.4E-10 1.8E-14 83.9 7.7 142 4-164 39-183 (225)
287 cd01853 Toc34_like Toc34-like 99.0 6.5E-10 1.4E-14 85.5 6.9 117 4-125 31-165 (249)
288 PF05783 DLIC: Dynein light in 99.0 5.5E-09 1.2E-13 86.8 12.4 168 5-180 26-267 (472)
289 cd01855 YqeH YqeH. YqeH is an 99.0 1.1E-09 2.4E-14 81.1 7.5 95 66-177 24-125 (190)
290 PTZ00258 GTP-binding protein; 99.0 2.5E-09 5.4E-14 86.8 9.9 83 4-87 21-126 (390)
291 PRK12289 GTPase RsgA; Reviewed 99.0 3.4E-09 7.4E-14 85.3 9.7 94 65-174 78-172 (352)
292 cd01859 MJ1464 MJ1464. This f 99.0 1.1E-09 2.5E-14 78.4 6.3 94 67-177 3-96 (156)
293 KOG3905 Dynein light intermedi 99.0 5.4E-09 1.2E-13 81.3 10.0 166 5-178 53-291 (473)
294 KOG1144 Translation initiation 99.0 2.9E-09 6.3E-14 90.4 8.4 169 4-180 474-690 (1064)
295 PRK09601 GTP-binding protein Y 98.9 2.8E-08 6.2E-13 79.8 12.3 82 5-87 3-107 (364)
296 PF04548 AIG1: AIG1 family; I 98.9 5.2E-09 1.1E-13 78.9 7.7 163 5-179 1-188 (212)
297 PRK07560 elongation factor EF- 98.9 5.4E-09 1.2E-13 92.1 8.9 115 3-122 19-152 (731)
298 COG2895 CysN GTPases - Sulfate 98.9 1.3E-08 2.9E-13 79.9 9.8 154 4-167 6-193 (431)
299 PLN00116 translation elongatio 98.9 1.1E-09 2.3E-14 97.7 4.3 115 3-122 18-163 (843)
300 COG5256 TEF1 Translation elong 98.9 1.2E-08 2.6E-13 81.8 9.7 157 4-168 7-202 (428)
301 TIGR00073 hypB hydrogenase acc 98.9 1.1E-08 2.3E-13 76.9 9.1 102 53-175 103-205 (207)
302 PTZ00416 elongation factor 2; 98.9 2E-09 4.3E-14 95.9 5.7 115 3-122 18-157 (836)
303 PRK12288 GTPase RsgA; Reviewed 98.9 1.9E-08 4E-13 81.0 10.2 90 73-175 117-206 (347)
304 PF00350 Dynamin_N: Dynamin fa 98.9 3.2E-09 7E-14 76.9 4.8 63 54-119 102-168 (168)
305 PF05049 IIGP: Interferon-indu 98.8 6.3E-09 1.4E-13 83.7 6.5 167 3-180 34-221 (376)
306 TIGR03597 GTPase_YqeH ribosome 98.8 8.5E-09 1.8E-13 83.6 6.8 96 63-175 50-151 (360)
307 PRK13768 GTPase; Provisional 98.8 2E-08 4.2E-13 77.7 8.5 124 54-177 98-247 (253)
308 KOG0461 Selenocysteine-specifi 98.8 2.1E-08 4.6E-13 78.7 8.5 169 3-183 6-199 (522)
309 cd01858 NGP_1 NGP-1. Autoanti 98.8 5.1E-08 1.1E-12 70.0 9.0 90 73-176 5-94 (157)
310 PRK09435 membrane ATPase/prote 98.8 3.9E-08 8.4E-13 78.4 8.8 107 52-177 148-260 (332)
311 PF03029 ATP_bind_1: Conserved 98.8 4E-10 8.6E-15 86.2 -2.8 121 54-176 92-236 (238)
312 cd01900 YchF YchF subfamily. 98.8 2.6E-08 5.7E-13 77.5 7.3 80 7-87 1-103 (274)
313 PF00735 Septin: Septin; Inte 98.7 1.1E-07 2.3E-12 74.6 10.0 116 3-124 3-157 (281)
314 KOG1532 GTPase XAB1, interacts 98.7 2.9E-08 6.4E-13 75.6 5.3 115 53-177 116-264 (366)
315 KOG2486 Predicted GTPase [Gene 98.7 1.7E-08 3.8E-13 76.9 3.5 158 4-175 136-314 (320)
316 KOG1486 GTP-binding protein DR 98.6 1.1E-06 2.4E-11 66.4 12.6 152 5-177 63-288 (364)
317 COG3276 SelB Selenocysteine-sp 98.6 3E-07 6.5E-12 74.4 10.2 151 7-177 3-162 (447)
318 cd01849 YlqF_related_GTPase Yl 98.6 2.1E-07 4.6E-12 66.6 8.2 83 78-176 1-84 (155)
319 TIGR00750 lao LAO/AO transport 98.6 1.1E-07 2.3E-12 75.4 6.8 105 52-177 126-238 (300)
320 cd01856 YlqF YlqF. Proteins o 98.6 2.8E-07 6.1E-12 67.1 8.4 89 70-177 13-101 (171)
321 TIGR00993 3a0901s04IAP86 chlor 98.6 7.3E-08 1.6E-12 82.1 5.8 117 3-124 117-251 (763)
322 cd01857 HSR1_MMR1 HSR1/MMR1. 98.6 1.2E-07 2.6E-12 66.8 6.0 78 72-164 7-84 (141)
323 COG5257 GCD11 Translation init 98.6 2.4E-07 5.1E-12 72.2 7.6 166 4-184 10-209 (415)
324 TIGR03596 GTPase_YlqF ribosome 98.6 4E-07 8.7E-12 71.4 8.8 91 70-179 15-105 (276)
325 KOG0468 U5 snRNP-specific prot 98.6 8.2E-08 1.8E-12 81.0 5.1 114 3-121 127-261 (971)
326 smart00053 DYNc Dynamin, GTPas 98.6 1.5E-07 3.2E-12 71.9 6.1 69 53-124 125-207 (240)
327 KOG0082 G-protein alpha subuni 98.6 4.9E-07 1.1E-11 72.1 9.2 132 45-180 189-347 (354)
328 KOG3887 Predicted small GTPase 98.5 7.3E-07 1.6E-11 66.9 8.4 166 5-181 28-206 (347)
329 COG0480 FusA Translation elong 98.5 5.7E-07 1.2E-11 78.2 8.1 118 2-124 8-143 (697)
330 KOG1547 Septin CDC10 and relat 98.5 1.1E-06 2.3E-11 66.0 8.3 162 2-177 44-243 (336)
331 KOG1143 Predicted translation 98.5 5.1E-06 1.1E-10 66.3 12.5 188 4-197 167-407 (591)
332 cd01857 HSR1_MMR1 HSR1/MMR1. 98.5 1.1E-07 2.5E-12 66.9 2.9 53 6-63 85-138 (141)
333 PRK09563 rbgA GTPase YlqF; Rev 98.5 1E-06 2.2E-11 69.5 8.4 90 70-178 18-107 (287)
334 PRK10463 hydrogenase nickel in 98.4 2.9E-07 6.3E-12 71.8 5.1 57 109-175 230-287 (290)
335 PF00503 G-alpha: G-protein al 98.4 5.4E-06 1.2E-10 68.2 11.8 124 53-176 236-389 (389)
336 COG4108 PrfC Peptide chain rel 98.4 1.8E-06 3.9E-11 70.0 8.5 132 3-151 11-163 (528)
337 COG0012 Predicted GTPase, prob 98.4 1E-05 2.3E-10 64.7 11.8 83 4-87 2-108 (372)
338 COG5258 GTPBP1 GTPase [General 98.3 2.3E-05 4.9E-10 62.8 13.4 163 5-172 118-334 (527)
339 cd01859 MJ1464 MJ1464. This f 98.3 6.2E-07 1.3E-11 64.2 3.3 54 4-62 101-155 (156)
340 COG5019 CDC3 Septin family pro 98.3 7.4E-06 1.6E-10 65.2 9.5 119 2-125 21-178 (373)
341 KOG0410 Predicted GTP binding 98.3 1E-06 2.2E-11 68.8 4.4 147 6-177 180-341 (410)
342 PRK13796 GTPase YqeH; Provisio 98.3 5.6E-06 1.2E-10 67.4 8.9 84 75-175 67-157 (365)
343 KOG0458 Elongation factor 1 al 98.2 2.2E-05 4.9E-10 65.7 11.8 155 5-168 178-373 (603)
344 PRK01889 GTPase RsgA; Reviewed 98.2 8.8E-06 1.9E-10 66.0 8.9 85 73-173 109-193 (356)
345 cd04178 Nucleostemin_like Nucl 98.2 1.7E-06 3.7E-11 63.0 3.5 54 4-62 117-171 (172)
346 COG0050 TufB GTPases - transla 98.2 7E-06 1.5E-10 63.5 6.6 167 4-182 12-206 (394)
347 KOG1954 Endocytosis/signaling 98.2 2.4E-06 5.2E-11 67.9 4.2 116 6-126 60-228 (532)
348 cd01858 NGP_1 NGP-1. Autoanti 98.1 2.3E-06 4.9E-11 61.4 3.6 54 4-62 102-156 (157)
349 cd01856 YlqF YlqF. Proteins o 98.1 1.7E-06 3.6E-11 63.0 2.9 54 5-63 116-170 (171)
350 COG1162 Predicted GTPases [Gen 98.1 4.2E-05 9E-10 59.8 9.7 98 65-175 68-165 (301)
351 KOG2655 Septin family protein 98.1 4.8E-05 1E-09 60.9 10.1 143 4-160 21-200 (366)
352 KOG0463 GTP-binding protein GP 98.0 0.00015 3.2E-09 58.2 12.2 154 4-170 133-351 (641)
353 TIGR03596 GTPase_YlqF ribosome 98.0 4.8E-06 1E-10 65.3 3.5 55 4-63 118-173 (276)
354 KOG0448 Mitofusin 1 GTPase, in 98.0 2.6E-05 5.6E-10 66.5 7.5 118 4-126 109-278 (749)
355 PRK09563 rbgA GTPase YlqF; Rev 98.0 7.6E-06 1.7E-10 64.5 3.9 56 4-64 121-177 (287)
356 COG1161 Predicted GTPases [Gen 97.9 5.8E-06 1.3E-10 66.2 2.9 55 4-63 132-187 (322)
357 cd01855 YqeH YqeH. YqeH is an 97.9 4.7E-06 1E-10 61.7 1.7 54 5-62 128-189 (190)
358 KOG0467 Translation elongation 97.9 2.3E-05 5E-10 67.5 5.9 113 3-120 8-135 (887)
359 COG1703 ArgK Putative periplas 97.8 5.8E-05 1.2E-09 58.7 6.6 103 52-177 143-254 (323)
360 PF09547 Spore_IV_A: Stage IV 97.8 0.00098 2.1E-08 54.6 13.5 156 5-176 18-236 (492)
361 PF03308 ArgK: ArgK protein; 97.8 1.1E-05 2.4E-10 61.6 2.1 101 53-177 122-230 (266)
362 KOG1487 GTP-binding protein DR 97.8 9.1E-05 2E-09 56.5 6.8 84 5-95 60-155 (358)
363 TIGR00092 GTP-binding protein 97.8 4E-05 8.6E-10 62.0 4.8 82 5-87 3-108 (368)
364 cd01849 YlqF_related_GTPase Yl 97.7 2.8E-05 6E-10 55.6 3.1 53 4-62 100-154 (155)
365 KOG0465 Mitochondrial elongati 97.7 0.00058 1.3E-08 57.9 10.2 116 2-122 37-169 (721)
366 KOG0466 Translation initiation 97.6 0.00011 2.4E-09 57.3 5.5 115 54-182 126-246 (466)
367 KOG4273 Uncharacterized conser 97.6 0.00074 1.6E-08 51.4 9.6 170 1-177 1-222 (418)
368 cd01851 GBP Guanylate-binding 97.6 7.2E-05 1.6E-09 56.9 4.3 88 5-93 8-108 (224)
369 PRK12289 GTPase RsgA; Reviewed 97.5 5.5E-05 1.2E-09 61.2 2.6 55 7-65 175-236 (352)
370 COG1618 Predicted nucleotide k 97.5 0.0012 2.7E-08 46.9 8.7 146 3-177 4-176 (179)
371 TIGR03348 VI_IcmF type VI secr 97.5 0.00052 1.1E-08 64.0 8.3 112 7-123 114-257 (1169)
372 PRK12288 GTPase RsgA; Reviewed 97.4 9.5E-05 2.1E-09 59.8 2.8 56 7-66 208-270 (347)
373 PF06858 NOG1: Nucleolar GTP-b 97.4 0.00066 1.4E-08 39.5 5.3 43 77-120 14-58 (58)
374 KOG1491 Predicted GTP-binding 97.4 0.0001 2.2E-09 58.2 2.3 83 5-88 21-126 (391)
375 TIGR03597 GTPase_YqeH ribosome 97.4 0.00012 2.6E-09 59.6 2.5 56 5-64 155-215 (360)
376 PF03193 DUF258: Protein of un 97.3 6.6E-05 1.4E-09 53.8 0.8 57 6-66 37-100 (161)
377 TIGR00157 ribosome small subun 97.3 0.0001 2.2E-09 56.8 1.9 23 6-29 122-144 (245)
378 KOG0099 G protein subunit Galp 97.3 0.00053 1.1E-08 52.5 5.6 70 53-123 202-283 (379)
379 KOG0464 Elongation factor G [T 97.3 0.00016 3.5E-09 58.7 2.9 117 3-124 36-169 (753)
380 PRK13796 GTPase YqeH; Provisio 97.3 0.00013 2.8E-09 59.5 2.3 56 5-64 161-221 (365)
381 KOG3929 Uncharacterized conser 97.3 0.00014 3.1E-09 55.4 2.1 86 9-95 47-138 (363)
382 KOG0447 Dynamin-like GTP bindi 97.3 0.00058 1.3E-08 57.4 5.7 70 54-126 413-496 (980)
383 KOG1424 Predicted GTP-binding 97.3 0.00015 3.3E-09 60.2 2.0 55 5-64 315-370 (562)
384 KOG0085 G protein subunit Galp 97.2 0.0002 4.4E-09 53.8 2.2 128 51-180 197-352 (359)
385 COG5192 BMS1 GTP-binding prote 97.2 0.0011 2.3E-08 56.1 6.0 111 5-126 70-180 (1077)
386 cd04178 Nucleostemin_like Nucl 97.1 0.0014 3.1E-08 47.6 5.7 45 78-124 1-45 (172)
387 KOG0460 Mitochondrial translat 97.1 0.0018 3.8E-08 51.5 6.4 164 5-180 55-248 (449)
388 KOG3859 Septins (P-loop GTPase 97.0 0.0014 3E-08 50.7 5.3 59 3-62 41-104 (406)
389 cd01854 YjeQ_engC YjeQ/EngC. 97.0 0.00026 5.6E-09 55.9 1.3 58 5-66 162-226 (287)
390 PRK00098 GTPase RsgA; Reviewed 97.0 0.0005 1.1E-08 54.6 2.4 23 6-29 166-188 (298)
391 PRK13695 putative NTPase; Prov 96.9 0.0075 1.6E-07 43.8 8.3 21 6-27 2-22 (174)
392 COG1162 Predicted GTPases [Gen 96.9 0.00066 1.4E-08 53.2 2.5 56 7-66 167-229 (301)
393 cd03110 Fer4_NifH_child This p 96.9 0.0056 1.2E-07 44.7 7.3 85 51-155 91-175 (179)
394 PRK10416 signal recognition pa 96.8 0.0032 6.8E-08 50.4 5.5 95 52-169 196-302 (318)
395 COG0378 HypB Ni2+-binding GTPa 96.7 0.0045 9.8E-08 45.5 5.3 81 78-176 119-200 (202)
396 cd03112 CobW_like The function 96.7 0.0019 4.2E-08 46.3 3.4 65 52-121 86-158 (158)
397 TIGR00064 ftsY signal recognit 96.7 0.0018 3.9E-08 50.7 3.3 95 52-169 154-260 (272)
398 PRK14974 cell division protein 96.5 0.0012 2.6E-08 53.1 1.7 95 53-170 223-323 (336)
399 TIGR01425 SRP54_euk signal rec 96.5 0.0022 4.7E-08 53.2 3.2 65 52-122 182-252 (429)
400 cd02038 FleN-like FleN is a me 96.5 0.0073 1.6E-07 42.3 5.2 65 53-121 45-109 (139)
401 COG1161 Predicted GTPases [Gen 96.2 0.0062 1.4E-07 48.9 3.8 94 59-171 16-111 (322)
402 KOG0469 Elongation factor 2 [T 96.1 0.0081 1.7E-07 50.3 4.0 70 49-122 94-163 (842)
403 KOG1424 Predicted GTP-binding 96.0 0.016 3.4E-07 48.6 5.3 80 66-161 165-244 (562)
404 KOG2484 GTPase [General functi 95.9 0.0023 5E-08 51.8 0.3 54 4-62 252-306 (435)
405 KOG2485 Conserved ATP/GTP bind 95.6 0.0073 1.6E-07 47.5 2.0 59 2-62 141-205 (335)
406 PF13521 AAA_28: AAA domain; P 95.6 0.0019 4.2E-08 46.4 -1.2 22 6-28 1-22 (163)
407 KOG0459 Polypeptide release fa 95.4 0.12 2.6E-06 42.3 8.3 161 4-170 79-279 (501)
408 COG3523 IcmF Type VI protein s 95.3 0.051 1.1E-06 50.5 6.5 111 7-123 128-270 (1188)
409 KOG2484 GTPase [General functi 95.3 0.014 3.1E-07 47.4 2.6 56 68-125 138-193 (435)
410 cd03111 CpaE_like This protein 95.1 0.022 4.9E-07 37.8 2.9 103 7-118 2-106 (106)
411 PRK12727 flagellar biosynthesi 95.1 0.087 1.9E-06 45.0 6.9 89 52-165 428-523 (559)
412 cd02042 ParA ParA and ParB of 95.0 0.044 9.5E-07 36.0 4.0 83 7-101 2-84 (104)
413 COG0523 Putative GTPases (G3E 95.0 0.13 2.8E-06 41.4 7.2 75 77-169 117-193 (323)
414 PF11111 CENP-M: Centromere pr 94.8 0.53 1.1E-05 34.1 9.2 137 5-176 16-152 (176)
415 PF03266 NTPase_1: NTPase; In 94.7 0.013 2.8E-07 42.5 1.0 52 6-60 1-52 (168)
416 KOG2423 Nucleolar GTPase [Gene 94.7 0.25 5.5E-06 40.5 8.1 115 74-202 211-342 (572)
417 PRK14722 flhF flagellar biosyn 94.6 0.09 2E-06 43.1 5.6 133 4-151 137-309 (374)
418 cd00009 AAA The AAA+ (ATPases 94.5 0.035 7.6E-07 38.2 2.8 24 5-29 20-43 (151)
419 PRK08118 topology modulation p 94.5 0.0089 1.9E-07 43.3 -0.4 23 5-28 2-24 (167)
420 COG1419 FlhF Flagellar GTP-bin 94.5 0.097 2.1E-06 43.0 5.4 125 4-151 203-366 (407)
421 PRK13505 formate--tetrahydrofo 94.4 0.78 1.7E-05 39.4 10.7 88 75-178 321-430 (557)
422 PRK00771 signal recognition pa 94.4 0.059 1.3E-06 45.1 4.1 83 53-157 176-265 (437)
423 COG1126 GlnQ ABC-type polar am 94.3 0.0093 2E-07 44.7 -0.5 24 156-179 163-186 (240)
424 PRK14738 gmk guanylate kinase; 94.3 0.012 2.5E-07 44.2 -0.1 23 5-28 14-36 (206)
425 cd01983 Fer4_NifH The Fer4_Nif 94.2 0.064 1.4E-06 34.2 3.4 69 7-89 2-71 (99)
426 COG1116 TauB ABC-type nitrate/ 94.2 0.01 2.2E-07 45.4 -0.6 22 7-29 32-53 (248)
427 KOG2423 Nucleolar GTPase [Gene 94.0 0.011 2.3E-07 48.2 -0.9 83 4-93 307-391 (572)
428 COG1117 PstB ABC-type phosphat 94.0 0.026 5.6E-07 42.3 1.2 41 7-53 36-76 (253)
429 PF13207 AAA_17: AAA domain; P 93.9 0.012 2.7E-07 39.7 -0.5 22 6-28 1-22 (121)
430 PRK14737 gmk guanylate kinase; 93.8 0.017 3.8E-07 42.5 0.1 24 5-29 5-28 (186)
431 PRK06217 hypothetical protein; 93.8 0.015 3.2E-07 42.7 -0.4 23 5-28 2-24 (183)
432 COG0194 Gmk Guanylate kinase [ 93.8 0.015 3.3E-07 42.4 -0.3 25 4-29 4-28 (191)
433 PRK07261 topology modulation p 93.8 0.015 3.2E-07 42.3 -0.5 22 6-28 2-23 (171)
434 PF00005 ABC_tran: ABC transpo 93.7 0.016 3.5E-07 40.1 -0.3 24 5-29 12-35 (137)
435 PRK10867 signal recognition pa 93.6 0.15 3.3E-06 42.6 5.2 85 52-158 183-274 (433)
436 COG0563 Adk Adenylate kinase a 93.5 0.017 3.6E-07 42.3 -0.5 22 6-28 2-23 (178)
437 PRK14723 flhF flagellar biosyn 93.5 0.2 4.4E-06 44.7 5.9 92 53-165 264-362 (767)
438 COG3640 CooC CO dehydrogenase 93.4 0.81 1.8E-05 35.0 8.1 63 53-122 134-198 (255)
439 PF03205 MobB: Molybdopterin g 93.2 0.014 3.1E-07 40.9 -1.2 22 6-28 2-23 (140)
440 PF04665 Pox_A32: Poxvirus A32 93.2 0.022 4.8E-07 43.6 -0.3 26 2-28 11-36 (241)
441 COG1136 SalX ABC-type antimicr 93.1 0.019 4.2E-07 43.5 -0.7 22 6-28 33-54 (226)
442 PF13671 AAA_33: AAA domain; P 93.1 0.02 4.2E-07 39.9 -0.6 19 7-26 2-20 (143)
443 cd02019 NK Nucleoside/nucleoti 93.1 0.019 4.1E-07 34.9 -0.7 21 7-28 2-22 (69)
444 COG3839 MalK ABC-type sugar tr 93.0 0.022 4.8E-07 45.8 -0.6 22 7-29 32-53 (338)
445 PF02263 GBP: Guanylate-bindin 93.0 0.041 8.8E-07 42.8 0.9 59 6-65 23-86 (260)
446 PRK08099 bifunctional DNA-bind 92.7 0.027 5.9E-07 46.6 -0.4 24 4-28 219-242 (399)
447 COG3638 ABC-type phosphate/pho 92.7 0.026 5.6E-07 42.9 -0.6 21 6-27 32-52 (258)
448 COG4598 HisP ABC-type histidin 92.6 0.081 1.8E-06 38.8 1.9 24 156-179 179-202 (256)
449 PHA02518 ParA-like protein; Pr 92.6 0.54 1.2E-05 34.9 6.6 67 52-121 76-145 (211)
450 COG1120 FepC ABC-type cobalami 92.5 0.027 5.9E-07 43.5 -0.6 20 7-27 31-50 (258)
451 PRK10078 ribose 1,5-bisphospho 92.5 0.027 5.9E-07 41.4 -0.7 22 6-28 4-25 (186)
452 TIGR03263 guanyl_kin guanylate 92.4 0.051 1.1E-06 39.5 0.7 22 6-28 3-24 (180)
453 PRK13900 type IV secretion sys 92.3 0.092 2E-06 42.4 2.1 25 4-29 160-184 (332)
454 PRK14530 adenylate kinase; Pro 92.3 0.036 7.7E-07 41.8 -0.3 24 1-26 1-24 (215)
455 KOG0780 Signal recognition par 92.2 0.12 2.6E-06 42.2 2.6 52 51-102 182-239 (483)
456 COG3172 NadR Predicted ATPase/ 92.1 0.032 6.8E-07 39.8 -0.6 21 5-26 9-29 (187)
457 PRK05057 aroK shikimate kinase 92.1 0.04 8.7E-07 40.0 -0.2 27 1-28 1-27 (172)
458 cd00071 GMPK Guanosine monopho 92.0 0.032 6.9E-07 39.0 -0.8 21 7-28 2-22 (137)
459 PF13238 AAA_18: AAA domain; P 92.0 0.034 7.3E-07 37.8 -0.6 21 7-28 1-21 (129)
460 TIGR02322 phosphon_PhnN phosph 91.9 0.03 6.6E-07 40.7 -1.0 22 6-28 3-24 (179)
461 COG0411 LivG ABC-type branched 91.9 0.12 2.6E-06 39.4 2.2 22 6-28 32-53 (250)
462 PRK00300 gmk guanylate kinase; 91.9 0.042 9E-07 40.9 -0.3 27 1-28 2-28 (205)
463 cd03222 ABC_RNaseL_inhibitor T 91.9 0.034 7.3E-07 40.7 -0.8 23 6-29 27-49 (177)
464 cd03255 ABC_MJ0796_Lo1CDE_FtsE 91.8 0.041 8.9E-07 41.4 -0.4 22 6-28 32-53 (218)
465 TIGR01360 aden_kin_iso1 adenyl 91.8 0.036 7.8E-07 40.5 -0.7 21 5-26 4-24 (188)
466 KOG0066 eIF2-interacting prote 91.8 0.21 4.5E-06 41.7 3.6 98 2-107 611-751 (807)
467 PRK05480 uridine/cytidine kina 91.8 0.046 1E-06 40.9 -0.1 26 2-28 4-29 (209)
468 COG4525 TauB ABC-type taurine 91.8 0.04 8.6E-07 40.9 -0.5 22 6-28 33-54 (259)
469 COG5008 PilU Tfp pilus assembl 91.7 0.14 2.9E-06 39.9 2.3 92 1-95 124-218 (375)
470 cd03225 ABC_cobalt_CbiO_domain 91.7 0.04 8.6E-07 41.3 -0.6 22 6-28 29-50 (211)
471 cd00820 PEPCK_HprK Phosphoenol 91.6 0.044 9.6E-07 36.5 -0.3 20 6-26 17-36 (107)
472 COG0410 LivF ABC-type branched 91.6 0.042 9E-07 41.6 -0.5 22 7-29 32-53 (237)
473 COG3842 PotA ABC-type spermidi 91.6 0.042 9.1E-07 44.5 -0.6 22 7-29 34-55 (352)
474 TIGR00960 3a0501s02 Type II (G 91.6 0.046 1E-06 41.1 -0.3 22 6-28 31-52 (216)
475 TIGR01166 cbiO cobalt transpor 91.6 0.042 9E-07 40.5 -0.6 22 6-28 20-41 (190)
476 PF13555 AAA_29: P-loop contai 91.5 0.037 8E-07 32.9 -0.8 20 6-26 25-44 (62)
477 PRK13851 type IV secretion sys 91.5 0.22 4.7E-06 40.5 3.3 25 4-29 162-186 (344)
478 cd03265 ABC_DrrA DrrA is the A 91.4 0.048 1E-06 41.2 -0.4 22 6-28 28-49 (220)
479 cd03221 ABCF_EF-3 ABCF_EF-3 E 91.3 0.047 1E-06 38.4 -0.5 23 6-29 28-50 (144)
480 cd03261 ABC_Org_Solvent_Resist 91.3 0.046 1E-06 41.7 -0.6 22 6-28 28-49 (235)
481 cd03264 ABC_drug_resistance_li 91.3 0.046 1E-06 40.9 -0.6 22 6-28 27-48 (211)
482 cd03226 ABC_cobalt_CbiO_domain 91.3 0.052 1.1E-06 40.5 -0.4 22 6-28 28-49 (205)
483 cd03238 ABC_UvrA The excision 91.2 0.05 1.1E-06 39.7 -0.4 21 5-26 22-42 (176)
484 cd03269 ABC_putative_ATPase Th 91.2 0.047 1E-06 40.8 -0.6 22 6-28 28-49 (210)
485 cd01131 PilT Pilus retraction 91.2 0.1 2.2E-06 38.8 1.2 23 6-29 3-25 (198)
486 cd02023 UMPK Uridine monophosp 91.2 0.038 8.3E-07 41.0 -1.1 21 7-28 2-22 (198)
487 TIGR01526 nadR_NMN_Atrans nico 91.2 0.047 1E-06 43.9 -0.7 24 4-28 162-185 (325)
488 TIGR02315 ABC_phnC phosphonate 91.2 0.049 1.1E-06 41.7 -0.6 22 6-28 30-51 (243)
489 cd03292 ABC_FtsE_transporter F 91.2 0.053 1.1E-06 40.7 -0.4 22 6-28 29-50 (214)
490 COG3840 ThiQ ABC-type thiamine 91.1 0.053 1.2E-06 39.8 -0.4 23 6-29 27-49 (231)
491 smart00382 AAA ATPases associa 91.1 0.052 1.1E-06 36.9 -0.5 24 5-29 3-26 (148)
492 PRK10751 molybdopterin-guanine 91.1 0.043 9.4E-07 39.9 -0.9 22 6-28 8-29 (173)
493 PRK13949 shikimate kinase; Pro 91.1 0.052 1.1E-06 39.3 -0.5 22 5-27 2-23 (169)
494 PRK11629 lolD lipoprotein tran 91.1 0.05 1.1E-06 41.5 -0.6 22 6-28 37-58 (233)
495 PRK13541 cytochrome c biogenes 91.0 0.054 1.2E-06 40.1 -0.4 23 6-29 28-50 (195)
496 cd03224 ABC_TM1139_LivF_branch 91.0 0.052 1.1E-06 40.9 -0.5 23 6-29 28-50 (222)
497 cd03257 ABC_NikE_OppD_transpor 91.0 0.052 1.1E-06 41.1 -0.5 22 6-28 33-54 (228)
498 PF05879 RHD3: Root hair defec 91.0 0.11 2.4E-06 46.5 1.4 53 10-63 1-58 (742)
499 cd03266 ABC_NatA_sodium_export 91.0 0.058 1.3E-06 40.6 -0.3 22 6-28 33-54 (218)
500 cd03263 ABC_subfamily_A The AB 91.0 0.051 1.1E-06 40.9 -0.6 23 6-29 30-52 (220)
No 1
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.9e-43 Score=251.56 Aligned_cols=166 Identities=30% Similarity=0.528 Sum_probs=157.0
Q ss_pred cceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeee-EEEECCeEEEEEEEeCCCCccccccccceecCCcEEE
Q 028595 3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSA-NVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 81 (207)
Q Consensus 3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i 81 (207)
.++||+++|+++|| ||+|+.||.++.|.+.|..|+|.++.. .+.++|+.+.|+||||+|||+|+++..+||++|+++|
T Consensus 8 ylFKiiliGds~VG-KtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~ahGii 86 (205)
T KOG0084|consen 8 YLFKIILIGDSGVG-KTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 86 (205)
T ss_pred eEEEEEEECCCCcC-hhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCCCeEE
Confidence 57999999999999 999999999999999999999999954 8999999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccC
Q 028595 82 LAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK 160 (207)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 160 (207)
+|||+++.+||+.+ ..|+.++.++. +++|.++||||+|+.+.+.+ ..+++++|+..++.+.|+|+||+
T Consensus 87 ~vyDiT~~~SF~~v-~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v----------~~~~a~~fa~~~~~~~f~ETSAK 155 (205)
T KOG0084|consen 87 FVYDITKQESFNNV-KRWIQEIDRYASENVPKLLVGNKCDLTEKRVV----------STEEAQEFADELGIPIFLETSAK 155 (205)
T ss_pred EEEEcccHHHhhhH-HHHHHHhhhhccCCCCeEEEeeccccHhheec----------CHHHHHHHHHhcCCcceeecccC
Confidence 99999999999999 99999999988 67899999999999998885 99999999999999449999999
Q ss_pred CCCCHHHHHHHHHHHHhCCC
Q 028595 161 TQQNVKAVFDAAIKVVIKPP 180 (207)
Q Consensus 161 ~~~~i~~~f~~i~~~~~~~~ 180 (207)
++.|++++|..+...+..+.
T Consensus 156 ~~~NVe~~F~~la~~lk~~~ 175 (205)
T KOG0084|consen 156 DSTNVEDAFLTLAKELKQRK 175 (205)
T ss_pred CccCHHHHHHHHHHHHHHhc
Confidence 99999999999999887543
No 2
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.9e-43 Score=247.01 Aligned_cols=168 Identities=29% Similarity=0.469 Sum_probs=156.3
Q ss_pred ccceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEE
Q 028595 2 ELLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF 80 (207)
Q Consensus 2 ~~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ 80 (207)
...+|||++|+.+|| ||||+.||..+.|.+...||+|.-| .+.+.+++..+++.||||+|||+|.++.++||++|+++
T Consensus 3 ~~~~KvvLLG~~~VG-KSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAGQERy~slapMYyRgA~AA 81 (200)
T KOG0092|consen 3 TREFKVVLLGDSGVG-KSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAGQERYHSLAPMYYRGANAA 81 (200)
T ss_pred cceEEEEEECCCCCC-chhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCCcccccccccceecCCcEE
Confidence 347899999999999 9999999999999988889999888 77899999999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEecc
Q 028595 81 VLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSS 159 (207)
Q Consensus 81 i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa 159 (207)
|+|||+++.+||..+ +.|...+++.. +++-+.|||||.|+.+.+.+ ..++++.++++.|. .|+|+||
T Consensus 82 ivvYDit~~~SF~~a-K~WvkeL~~~~~~~~vialvGNK~DL~~~R~V----------~~~ea~~yAe~~gl-l~~ETSA 149 (200)
T KOG0092|consen 82 IVVYDITDEESFEKA-KNWVKELQRQASPNIVIALVGNKADLLERREV----------EFEEAQAYAESQGL-LFFETSA 149 (200)
T ss_pred EEEEecccHHHHHHH-HHHHHHHHhhCCCCeEEEEecchhhhhhcccc----------cHHHHHHHHHhcCC-EEEEEec
Confidence 999999999999999 89999998877 56778899999999987775 99999999999998 9999999
Q ss_pred CCCCCHHHHHHHHHHHHhCCCcc
Q 028595 160 KTQQNVKAVFDAAIKVVIKPPQK 182 (207)
Q Consensus 160 ~~~~~i~~~f~~i~~~~~~~~~~ 182 (207)
+++.|++++|..|.+.++..+..
T Consensus 150 KTg~Nv~~if~~Ia~~lp~~~~~ 172 (200)
T KOG0092|consen 150 KTGENVNEIFQAIAEKLPCSDPQ 172 (200)
T ss_pred ccccCHHHHHHHHHHhccCcccc
Confidence 99999999999999999876543
No 3
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.1e-41 Score=241.91 Aligned_cols=165 Identities=31% Similarity=0.423 Sum_probs=155.3
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEE
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 82 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~ 82 (207)
.+|++++|+.+|| |||||+||+.+.|...|.+|+|.+| ++++.+.|.++.|++|||+|||+|+++.+.|+++++++|+
T Consensus 22 ~~KlVflGdqsVG-KTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQERFrslipsY~Rds~vavi 100 (221)
T KOG0094|consen 22 KYKLVFLGDQSVG-KTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVI 100 (221)
T ss_pred EEEEEEEccCccc-hHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecccHHHHhhhhhhhccCCeEEEE
Confidence 3799999999999 9999999999999999999999999 7789999999999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhcC-C-CCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccC
Q 028595 83 AFSLVSRASYENVLKKWIPELQHYS-P-GVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK 160 (207)
Q Consensus 83 v~d~~~~~s~~~~~~~~~~~i~~~~-~-~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 160 (207)
|||++|..||++. .+|++.+...+ + ++-+++||||.||.+.+++ +.++++..+++++. .|+++||+
T Consensus 101 VyDit~~~Sfe~t-~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqv----------s~eEg~~kAkel~a-~f~etsak 168 (221)
T KOG0094|consen 101 VYDITDRNSFENT-SKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQV----------SIEEGERKAKELNA-EFIETSAK 168 (221)
T ss_pred EEeccccchHHHH-HHHHHHHHhccCCCceEEEEEcccccccchhhh----------hHHHHHHHHHHhCc-EEEEeccc
Confidence 9999999999999 89999998776 4 5788999999999999886 99999999999998 99999999
Q ss_pred CCCCHHHHHHHHHHHHhCCCc
Q 028595 161 TQQNVKAVFDAAIKVVIKPPQ 181 (207)
Q Consensus 161 ~~~~i~~~f~~i~~~~~~~~~ 181 (207)
.|.||.++|..|...+.....
T Consensus 169 ~g~NVk~lFrrIaa~l~~~~~ 189 (221)
T KOG0094|consen 169 AGENVKQLFRRIAAALPGMEV 189 (221)
T ss_pred CCCCHHHHHHHHHHhccCccc
Confidence 999999999998888877654
No 4
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=100.00 E-value=2.6e-40 Score=245.47 Aligned_cols=188 Identities=45% Similarity=0.730 Sum_probs=158.9
Q ss_pred cceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEE
Q 028595 3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 82 (207)
Q Consensus 3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~ 82 (207)
..+||+++|+.+|| ||||+++|..+.+...|.||+++.+...+.+++..+.+.+|||+|+++|+.+++.|++++|++|+
T Consensus 2 ~~~ki~~vG~~~vG-KTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~il 80 (191)
T cd01875 2 QSIKCVVVGDGAVG-KTCLLICYTTNAFPKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFII 80 (191)
T ss_pred CcEEEEEECCCCCC-HHHHHHHHHhCCCCcCCCCceEeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhccCCCEEEE
Confidence 45799999999999 99999999999999999999998887777889999999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCccccc--CCCCCcccCHHHHHHHHHHhCCcEEEEeccC
Q 028595 83 AFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSK 160 (207)
Q Consensus 83 v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 160 (207)
|||+++++|++.+...|...+....+++|++|||||.|+.+...... .....+.+..++++++++.++..+|+|+||+
T Consensus 81 vydit~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~SAk 160 (191)
T cd01875 81 CFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSAL 160 (191)
T ss_pred EEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeCCC
Confidence 99999999999995479888877667899999999999975432100 0012234678899999999985589999999
Q ss_pred CCCCHHHHHHHHHHHHhCCCcchhhhcccCCCeEEe
Q 028595 161 TQQNVKAVFDAAIKVVIKPPQKQKEKKKKQRGCLLN 196 (207)
Q Consensus 161 ~~~~i~~~f~~i~~~~~~~~~~~~~~~~~~~~c~~~ 196 (207)
+|.||+++|+++++.+..+.. . + ++++|.+|
T Consensus 161 ~g~~v~e~f~~l~~~~~~~~~---~-~-~~~~c~~~ 191 (191)
T cd01875 161 NQDGVKEVFAEAVRAVLNPTP---I-K-DTKSCVLL 191 (191)
T ss_pred CCCCHHHHHHHHHHHHhcccc---c-c-CCCCceeC
Confidence 999999999999999987642 1 1 22358764
No 5
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=100.00 E-value=3.7e-40 Score=241.08 Aligned_cols=175 Identities=74% Similarity=1.130 Sum_probs=156.8
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEE
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA 83 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v 83 (207)
.+||+++|++++| ||+|+.+|..+.+...|.||+++.+...+.+++..+.+.||||+|++++..++..+++++|++|+|
T Consensus 1 ~~kivv~G~~~vG-KTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv 79 (176)
T cd04133 1 FIKCVTVGDGAVG-KTCMLICYTSNKFPTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA 79 (176)
T ss_pred CeEEEEECCCCCc-HHHHHHHHhcCCCCCCCCCcceeeeEEEEEECCEEEEEEEEECCCCccccccchhhcCCCcEEEEE
Confidence 3699999999999 999999999999999999999998877888899999999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCCCC
Q 028595 84 FSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ 163 (207)
Q Consensus 84 ~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~ 163 (207)
||+++++||+.+...|+..+....+++|++|||||+|+.+.+......+..+.+..++++++++.++..+|+||||++|.
T Consensus 80 yd~~~~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk~~~ 159 (176)
T cd04133 80 FSLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIECSSKTQQ 159 (176)
T ss_pred EEcCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEECCCCccc
Confidence 99999999999856899999877778999999999999765433333445556789999999999997579999999999
Q ss_pred CHHHHHHHHHHHHhCC
Q 028595 164 NVKAVFDAAIKVVIKP 179 (207)
Q Consensus 164 ~i~~~f~~i~~~~~~~ 179 (207)
||+++|+.+++.+.++
T Consensus 160 nV~~~F~~~~~~~~~~ 175 (176)
T cd04133 160 NVKAVFDAAIKVVLQP 175 (176)
T ss_pred CHHHHHHHHHHHHhcC
Confidence 9999999999987554
No 6
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.1e-40 Score=239.20 Aligned_cols=166 Identities=28% Similarity=0.487 Sum_probs=156.8
Q ss_pred cceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEE
Q 028595 3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 81 (207)
Q Consensus 3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i 81 (207)
..+||+++|+++|| ||+|+.+|..+.+...+..|+|.+| ...+.++|..+.+++|||+||++++.+...|+++|++++
T Consensus 11 ~~~kvlliGDs~vG-Kt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyrgA~gi~ 89 (207)
T KOG0078|consen 11 YLFKLLLIGDSGVG-KTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGIL 89 (207)
T ss_pred eEEEEEEECCCCCc-hhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHhhcCeeE
Confidence 47899999999999 9999999999999999999999999 558999999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhcCC-CCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccC
Q 028595 82 LAFSLVSRASYENVLKKWIPELQHYSP-GVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK 160 (207)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~~i~~~~~-~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 160 (207)
+|||+++..||+++ ..|+..+.++.+ ++|.++||||+|+...+++ ..+.++++|.++|. .|+|+||+
T Consensus 90 LvyDitne~Sfeni-~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V----------~~e~ge~lA~e~G~-~F~EtSAk 157 (207)
T KOG0078|consen 90 LVYDITNEKSFENI-RNWIKNIDEHASDDVVKILVGNKCDLEEKRQV----------SKERGEALAREYGI-KFFETSAK 157 (207)
T ss_pred EEEEccchHHHHHH-HHHHHHHHhhCCCCCcEEEeeccccccccccc----------cHHHHHHHHHHhCC-eEEEcccc
Confidence 99999999999999 679999998884 8999999999999887775 99999999999998 99999999
Q ss_pred CCCCHHHHHHHHHHHHhCCCc
Q 028595 161 TQQNVKAVFDAAIKVVIKPPQ 181 (207)
Q Consensus 161 ~~~~i~~~f~~i~~~~~~~~~ 181 (207)
+|.||+++|..+++.+..+..
T Consensus 158 ~~~NI~eaF~~La~~i~~k~~ 178 (207)
T KOG0078|consen 158 TNFNIEEAFLSLARDILQKLE 178 (207)
T ss_pred CCCCHHHHHHHHHHHHHhhcc
Confidence 999999999999999986543
No 7
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.9e-41 Score=236.77 Aligned_cols=164 Identities=26% Similarity=0.423 Sum_probs=156.2
Q ss_pred cceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEE
Q 028595 3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 81 (207)
Q Consensus 3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i 81 (207)
.++|++++|+.+|| ||+|+.+|+.+.|.+.+..|+|.+| ...+.++++.++|+||||+|||.+++..+.||+++.++|
T Consensus 5 ~~fKyIiiGd~gVG-KSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~Gal 83 (216)
T KOG0098|consen 5 YLFKYIIIGDTGVG-KSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAGAL 83 (216)
T ss_pred ceEEEEEECCCCcc-HHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcceE
Confidence 57999999999999 9999999999999999999999999 668999999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccC
Q 028595 82 LAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK 160 (207)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 160 (207)
+|||+++++||.++ ..|+..+.+.. ++..++++|||+|+...+.+ +.+++++||+++|+ .|+|+||+
T Consensus 84 LVydit~r~sF~hL-~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~V----------s~EEGeaFA~ehgL-ifmETSak 151 (216)
T KOG0098|consen 84 LVYDITRRESFNHL-TSWLEDARQHSNENMVIMLIGNKSDLEARREV----------SKEEGEAFAREHGL-IFMETSAK 151 (216)
T ss_pred EEEEccchhhHHHH-HHHHHHHHHhcCCCcEEEEEcchhhhhccccc----------cHHHHHHHHHHcCc-eeehhhhh
Confidence 99999999999999 89999998885 89999999999999988885 99999999999998 99999999
Q ss_pred CCCCHHHHHHHHHHHHhCC
Q 028595 161 TQQNVKAVFDAAIKVVIKP 179 (207)
Q Consensus 161 ~~~~i~~~f~~i~~~~~~~ 179 (207)
+++|++++|..+...+++.
T Consensus 152 t~~~VEEaF~nta~~Iy~~ 170 (216)
T KOG0098|consen 152 TAENVEEAFINTAKEIYRK 170 (216)
T ss_pred hhhhHHHHHHHHHHHHHHH
Confidence 9999999999999888754
No 8
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=3.1e-39 Score=244.69 Aligned_cols=175 Identities=32% Similarity=0.578 Sum_probs=153.4
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEE
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA 83 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v 83 (207)
..||+++|+.+|| ||+|+++|..+.|...|.||++..+...+.+++..+.+.||||+|++.|..++..|++++|++|+|
T Consensus 13 ~~KIvvvGd~~VG-KTsLi~r~~~~~F~~~y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIlV 91 (232)
T cd04174 13 RCKLVLVGDVQCG-KTAMLQVLAKDCYPETYVPTVFENYTAGLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLC 91 (232)
T ss_pred eEEEEEECCCCCc-HHHHHHHHhcCCCCCCcCCceeeeeEEEEEECCEEEEEEEEeCCCchhhHHHHHHHcCCCcEEEEE
Confidence 5799999999999 999999999999999999999999988888999999999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCC--CCCcccCHHHHHHHHHHhCCcEEEEeccCC
Q 028595 84 FSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADH--PGLVPVTTAQGEELRKQIGASYYIECSSKT 161 (207)
Q Consensus 84 ~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 161 (207)
||+++++||+.+...|+..+.+..++.|+++||||+|+.+....+... ...+.+..++++++++.+++..|+||||++
T Consensus 92 yDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~~EtSAkt 171 (232)
T cd04174 92 FDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVYLECSAFT 171 (232)
T ss_pred EECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEEEEccCCc
Confidence 999999999986578999998877889999999999986432111000 012346899999999999986799999999
Q ss_pred CC-CHHHHHHHHHHHHhCC
Q 028595 162 QQ-NVKAVFDAAIKVVIKP 179 (207)
Q Consensus 162 ~~-~i~~~f~~i~~~~~~~ 179 (207)
|+ ||+++|..++..+.+.
T Consensus 172 g~~~V~e~F~~~~~~~~~~ 190 (232)
T cd04174 172 SEKSIHSIFRSASLLCLNK 190 (232)
T ss_pred CCcCHHHHHHHHHHHHHHh
Confidence 98 8999999999888753
No 9
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=100.00 E-value=5.3e-39 Score=236.28 Aligned_cols=175 Identities=33% Similarity=0.595 Sum_probs=153.3
Q ss_pred cceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEE
Q 028595 3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 82 (207)
Q Consensus 3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~ 82 (207)
...||+++|+.+|| ||||+++|..+.+...|.||++..+...+.+++..+.+.||||+|++.|..+++.+++++|++|+
T Consensus 4 ~~~KivvvGd~~vG-KTsli~~~~~~~f~~~~~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~il 82 (182)
T cd04172 4 VKCKIVVVGDSQCG-KTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLI 82 (182)
T ss_pred ceEEEEEECCCCCC-HHHHHHHHHhCCCCCccCCceeeeeEEEEEECCEEEEEEEEECCCchhhHhhhhhhcCCCCEEEE
Confidence 46799999999999 99999999999999999999999888888899999999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCC--CCCcccCHHHHHHHHHHhCCcEEEEeccC
Q 028595 83 AFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADH--PGLVPVTTAQGEELRKQIGASYYIECSSK 160 (207)
Q Consensus 83 v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 160 (207)
|||+++++|++.+...|+..+.+..++.|++|||||+|+.+....+... ...+.+..++++++++++++.+|+||||+
T Consensus 83 vyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E~SAk 162 (182)
T cd04172 83 CFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSAL 162 (182)
T ss_pred EEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEEEECCcC
Confidence 9999999999997678999998877899999999999996531110000 01234689999999999996689999999
Q ss_pred CCCC-HHHHHHHHHHHHhC
Q 028595 161 TQQN-VKAVFDAAIKVVIK 178 (207)
Q Consensus 161 ~~~~-i~~~f~~i~~~~~~ 178 (207)
+|.| |+++|..+++.++.
T Consensus 163 ~~~n~v~~~F~~~~~~~~~ 181 (182)
T cd04172 163 QSENSVRDIFHVATLACVN 181 (182)
T ss_pred CCCCCHHHHHHHHHHHHhc
Confidence 9998 99999999987653
No 10
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=100.00 E-value=5.4e-39 Score=237.38 Aligned_cols=165 Identities=25% Similarity=0.433 Sum_probs=151.6
Q ss_pred ccceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEE
Q 028595 2 ELLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF 80 (207)
Q Consensus 2 ~~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ 80 (207)
+..+||+++|+.+|| ||||+++|.++.+...+.||.+..+ ...+.+++..+.+++|||+|+++|..++..+++++|++
T Consensus 4 ~~~~KivviG~~~vG-KTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~i 82 (189)
T cd04121 4 DYLLKFLLVGDSDVG-KGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGI 82 (189)
T ss_pred CceeEEEEECCCCCC-HHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhcCCCEE
Confidence 456899999999999 9999999999998888888988777 44678899999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccC
Q 028595 81 VLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK 160 (207)
Q Consensus 81 i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 160 (207)
|+|||+++++|++++ ..|++.+....+++|++|||||.|+.+.+.+ ..++++.+++.+++ +|+|+||+
T Consensus 83 llVfD~t~~~Sf~~~-~~w~~~i~~~~~~~piilVGNK~DL~~~~~v----------~~~~~~~~a~~~~~-~~~e~SAk 150 (189)
T cd04121 83 ILVYDITNRWSFDGI-DRWIKEIDEHAPGVPKILVGNRLHLAFKRQV----------ATEQAQAYAERNGM-TFFEVSPL 150 (189)
T ss_pred EEEEECcCHHHHHHH-HHHHHHHHHhCCCCCEEEEEECccchhccCC----------CHHHHHHHHHHcCC-EEEEecCC
Confidence 999999999999999 8999999877789999999999999776654 88999999999998 99999999
Q ss_pred CCCCHHHHHHHHHHHHhCC
Q 028595 161 TQQNVKAVFDAAIKVVIKP 179 (207)
Q Consensus 161 ~~~~i~~~f~~i~~~~~~~ 179 (207)
+|.||+++|+++++.+..+
T Consensus 151 ~g~~V~~~F~~l~~~i~~~ 169 (189)
T cd04121 151 CNFNITESFTELARIVLMR 169 (189)
T ss_pred CCCCHHHHHHHHHHHHHHh
Confidence 9999999999999888744
No 11
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=1.2e-38 Score=233.91 Aligned_cols=173 Identities=33% Similarity=0.595 Sum_probs=151.5
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEE
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA 83 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v 83 (207)
+.||+++|+.+|| ||||+++|.++.+...|.||++..+...+.+++..+.+.+|||+|++.|..+...+++++|++|+|
T Consensus 1 ~~Kiv~vG~~~vG-KTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilv 79 (178)
T cd04131 1 RCKIVVVGDVQCG-KTALLQVFAKDCYPETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLIC 79 (178)
T ss_pred CeEEEEECCCCCC-HHHHHHHHHhCcCCCCcCCceEEEEEEEEEECCEEEEEEEEECCCchhhhhcchhhcCCCCEEEEE
Confidence 4799999999999 999999999999999999999988888888999999999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccC--CCCCcccCHHHHHHHHHHhCCcEEEEeccCC
Q 028595 84 FSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLAD--HPGLVPVTTAQGEELRKQIGASYYIECSSKT 161 (207)
Q Consensus 84 ~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 161 (207)
||+++++||+.+...|+..+.+.+++.|+++||||+|+.+....... ....+++..++++++++.+++.+|+||||++
T Consensus 80 fdit~~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SA~~ 159 (178)
T cd04131 80 FDISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIYLECSAFT 159 (178)
T ss_pred EECCChhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEEEECccCc
Confidence 99999999999657899999888889999999999999652110000 0012346889999999999976899999999
Q ss_pred CCC-HHHHHHHHHHHHh
Q 028595 162 QQN-VKAVFDAAIKVVI 177 (207)
Q Consensus 162 ~~~-i~~~f~~i~~~~~ 177 (207)
|+| |+++|..+++.++
T Consensus 160 ~~~~v~~~F~~~~~~~~ 176 (178)
T cd04131 160 SEKSVRDIFHVATMACL 176 (178)
T ss_pred CCcCHHHHHHHHHHHHh
Confidence 995 9999999998655
No 12
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=100.00 E-value=1.2e-38 Score=240.35 Aligned_cols=175 Identities=34% Similarity=0.606 Sum_probs=154.1
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEE
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA 83 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v 83 (207)
+.||+++|+.+|| ||+|+++|..+.+...|.||++..+...+.+++..+.|.||||+|++.|..+++.+++++|++|+|
T Consensus 1 ~~KIvvvGd~~vG-KTsLi~~~~~~~f~~~y~pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illv 79 (222)
T cd04173 1 RCKIVVVGDAECG-KTALLQVFAKDAYPGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLIC 79 (222)
T ss_pred CeEEEEECCCCCC-HHHHHHHHHcCCCCCccCCccccceEEEEEECCEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEE
Confidence 4799999999999 999999999999999999999998888888999999999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCC--CCCcccCHHHHHHHHHHhCCcEEEEeccCC
Q 028595 84 FSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADH--PGLVPVTTAQGEELRKQIGASYYIECSSKT 161 (207)
Q Consensus 84 ~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 161 (207)
||++++++++.+...|...+....++.|++|||||+|+.++...+... ....++..++++.+++.+|+.+|+||||++
T Consensus 80 fdis~~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y~E~SAk~ 159 (222)
T cd04173 80 FDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSYVECSSRS 159 (222)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEEEEcCCCc
Confidence 999999999999778988887777899999999999997543211111 112347889999999999976999999999
Q ss_pred CCC-HHHHHHHHHHHHhCC
Q 028595 162 QQN-VKAVFDAAIKVVIKP 179 (207)
Q Consensus 162 ~~~-i~~~f~~i~~~~~~~ 179 (207)
+++ |+++|..++...+.+
T Consensus 160 ~~~~V~~~F~~~~~~~~~~ 178 (222)
T cd04173 160 SERSVRDVFHVATVASLGR 178 (222)
T ss_pred CCcCHHHHHHHHHHHHHhc
Confidence 985 999999999988764
No 13
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=3.1e-40 Score=224.36 Aligned_cols=167 Identities=31% Similarity=0.477 Sum_probs=157.4
Q ss_pred CccceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeee-EEEECCeEEEEEEEeCCCCccccccccceecCCcE
Q 028595 1 MELLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSA-NVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADV 79 (207)
Q Consensus 1 m~~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~ 79 (207)
|.+++|.+|+|+++|| ||+|+.+|..+.|..+|..|+|.++.. .+.++|..+.++|||++|+|+|+.+...|+++.++
T Consensus 5 ~dhLfkllIigDsgVG-KssLl~rF~ddtFs~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqErFrtitstyyrgthg 83 (198)
T KOG0079|consen 5 YDHLFKLLIIGDSGVG-KSSLLLRFADDTFSGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYYRGTHG 83 (198)
T ss_pred HHHHHHHHeecCCccc-HHHHHHHHhhcccccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHccCCce
Confidence 5678999999999999 999999999999999999999999955 78999999999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEecc
Q 028595 80 FVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSS 159 (207)
Q Consensus 80 ~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa 159 (207)
+++|||++|.+||.++ ..|++.++..++.+|-++||||.|.++.+- +..++++.|+..+|+ .+||+||
T Consensus 84 v~vVYDVTn~ESF~Nv-~rWLeei~~ncdsv~~vLVGNK~d~~~Rrv----------V~t~dAr~~A~~mgi-e~FETSa 151 (198)
T KOG0079|consen 84 VIVVYDVTNGESFNNV-KRWLEEIRNNCDSVPKVLVGNKNDDPERRV----------VDTEDARAFALQMGI-ELFETSA 151 (198)
T ss_pred EEEEEECcchhhhHhH-HHHHHHHHhcCccccceecccCCCCcccee----------eehHHHHHHHHhcCc-hheehhh
Confidence 9999999999999999 899999999999999999999999987766 499999999999999 9999999
Q ss_pred CCCCCHHHHHHHHHHHHhCCC
Q 028595 160 KTQQNVKAVFDAAIKVVIKPP 180 (207)
Q Consensus 160 ~~~~~i~~~f~~i~~~~~~~~ 180 (207)
++.+|++.+|.-|.++..+..
T Consensus 152 Ke~~NvE~mF~cit~qvl~~k 172 (198)
T KOG0079|consen 152 KENENVEAMFHCITKQVLQAK 172 (198)
T ss_pred hhcccchHHHHHHHHHHHHHH
Confidence 999999999999998887543
No 14
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=4.8e-39 Score=221.43 Aligned_cols=166 Identities=28% Similarity=0.503 Sum_probs=154.8
Q ss_pred cceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEE
Q 028595 3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 81 (207)
Q Consensus 3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i 81 (207)
..+||++||.++|| ||+|+.+|..+.|.+....|+|.+| .+.+.++|..+++-||||+|||+|+.+.+.||++|+++|
T Consensus 10 ~t~KiLlIGeSGVG-KSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRgaqGiI 88 (209)
T KOG0080|consen 10 TTFKILLIGESGVG-KSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGAQGII 88 (209)
T ss_pred eeEEEEEEccCCcc-HHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccCceeE
Confidence 35899999999999 9999999999999999888899999 558999999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhcC--CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEecc
Q 028595 82 LAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSS 159 (207)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa 159 (207)
+|||++.+++|..+ ..|++++..++ +++-.++||||+|...++. |+.+++.+|++++++ -|+|+||
T Consensus 89 lVYDVT~Rdtf~kL-d~W~~Eld~Ystn~diikmlVgNKiDkes~R~----------V~reEG~kfAr~h~~-LFiE~SA 156 (209)
T KOG0080|consen 89 LVYDVTSRDTFVKL-DIWLKELDLYSTNPDIIKMLVGNKIDKESERV----------VDREEGLKFARKHRC-LFIECSA 156 (209)
T ss_pred EEEEccchhhHHhH-HHHHHHHHhhcCCccHhHhhhcccccchhccc----------ccHHHHHHHHHhhCc-EEEEcch
Confidence 99999999999999 99999999888 5677789999999876665 599999999999999 9999999
Q ss_pred CCCCCHHHHHHHHHHHHhCCCc
Q 028595 160 KTQQNVKAVFDAAIKVVIKPPQ 181 (207)
Q Consensus 160 ~~~~~i~~~f~~i~~~~~~~~~ 181 (207)
++.+|++..|++++.++++.+.
T Consensus 157 kt~~~V~~~FeelveKIi~tp~ 178 (209)
T KOG0080|consen 157 KTRENVQCCFEELVEKIIETPS 178 (209)
T ss_pred hhhccHHHHHHHHHHHHhcCcc
Confidence 9999999999999999997654
No 15
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=100.00 E-value=6.6e-39 Score=225.57 Aligned_cols=168 Identities=28% Similarity=0.436 Sum_probs=153.7
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEE
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 82 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~ 82 (207)
..||+++|+++|| ||||.|+|.+++|...|..|+|.+| .+.+.++++.+.++||||+|||+|.++.-.+|+++|++++
T Consensus 9 lLKViiLGDsGVG-KtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaDcCvl 87 (210)
T KOG0394|consen 9 LLKVIILGDSGVG-KTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGADCCVL 87 (210)
T ss_pred ceEEEEeCCCCcc-HHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCceEEE
Confidence 4799999999999 9999999999999999999999888 7799999999999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhcC-C----CCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEe
Q 028595 83 AFSLVSRASYENVLKKWIPELQHYS-P----GVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIEC 157 (207)
Q Consensus 83 v~d~~~~~s~~~~~~~~~~~i~~~~-~----~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~ 157 (207)
|||++++.||+.+ ..|.+++.... + ..|+||+|||+|+.... .|.++.+.++.||.+.|-.||||+
T Consensus 88 vydv~~~~Sfe~L-~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~--------~r~VS~~~Aq~WC~s~gnipyfEt 158 (210)
T KOG0394|consen 88 VYDVNNPKSFENL-ENWRKEFLIQASPQDPETFPFVILGNKIDVDGGK--------SRQVSEKKAQTWCKSKGNIPYFET 158 (210)
T ss_pred EeecCChhhhccH-HHHHHHHHHhcCCCCCCcccEEEEcccccCCCCc--------cceeeHHHHHHHHHhcCCceeEEe
Confidence 9999999999999 89988886554 2 58999999999997632 133699999999999987799999
Q ss_pred ccCCCCCHHHHHHHHHHHHhCCCc
Q 028595 158 SSKTQQNVKAVFDAAIKVVIKPPQ 181 (207)
Q Consensus 158 Sa~~~~~i~~~f~~i~~~~~~~~~ 181 (207)
||+...||+++|..+.+.++..+.
T Consensus 159 SAK~~~NV~~AFe~ia~~aL~~E~ 182 (210)
T KOG0394|consen 159 SAKEATNVDEAFEEIARRALANED 182 (210)
T ss_pred cccccccHHHHHHHHHHHHHhccc
Confidence 999999999999999999986654
No 16
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=1.1e-37 Score=231.16 Aligned_cols=187 Identities=34% Similarity=0.542 Sum_probs=159.5
Q ss_pred eeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEEE
Q 028595 5 AKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 84 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 84 (207)
.||+++|.+++| ||||+++|.++.+...+.||++..+...+.+++..+.+.||||+|++.+..++..+++++|++|+||
T Consensus 1 ~kivivG~~~vG-KTsli~~~~~~~~~~~~~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~ 79 (189)
T cd04134 1 RKVVVLGDGACG-KTSLLNVFTRGYFPQVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCF 79 (189)
T ss_pred CEEEEECCCCCC-HHHHHHHHhcCCCCCccCCcceeeeEEEEEECCEEEEEEEEECCCChhccccccccccCCCEEEEEE
Confidence 489999999999 9999999999999888999999888777778888999999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCccccc--CCCCCcccCHHHHHHHHHHhCCcEEEEeccCCC
Q 028595 85 SLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQ 162 (207)
Q Consensus 85 d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~ 162 (207)
|++++++++.+...|+..+....++.|+++||||+|+.+.+.... .......+..+++..+++..+..+|+++||++|
T Consensus 80 dv~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~ 159 (189)
T cd04134 80 SVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRYLECSAKLN 159 (189)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEccCCcC
Confidence 999999999985579998887778899999999999976543100 011112356788899999888558999999999
Q ss_pred CCHHHHHHHHHHHHhCCCcchhhhcccCCCeEEe
Q 028595 163 QNVKAVFDAAIKVVIKPPQKQKEKKKKQRGCLLN 196 (207)
Q Consensus 163 ~~i~~~f~~i~~~~~~~~~~~~~~~~~~~~c~~~ 196 (207)
.|++++|+++++.++.++. ..+.++.|+++
T Consensus 160 ~~v~e~f~~l~~~~~~~~~----~~~~~~~~~~~ 189 (189)
T cd04134 160 RGVNEAFTEAARVALNVRP----PHPHSSACTIA 189 (189)
T ss_pred CCHHHHHHHHHHHHhcccc----cCcCCCcceeC
Confidence 9999999999999987653 45667788874
No 17
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=100.00 E-value=2.2e-38 Score=235.05 Aligned_cols=178 Identities=31% Similarity=0.510 Sum_probs=154.0
Q ss_pred eEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEEEe
Q 028595 6 KLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS 85 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 85 (207)
||+++|.++|| ||||+++|+.+.+...+.||+++.+...+.+++..+.+.+|||+|++++..++..+++++|++|+|||
T Consensus 1 ki~ivG~~~vG-KTsli~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d 79 (190)
T cd04144 1 KLVVLGDGGVG-KTALTIQLCLNHFVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYS 79 (190)
T ss_pred CEEEECCCCCC-HHHHHHHHHhCCCCccCCCchHhhEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEE
Confidence 68999999999 99999999999998889999998887777889989999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhcC----CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCC
Q 028595 86 LVSRASYENVLKKWIPELQHYS----PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT 161 (207)
Q Consensus 86 ~~~~~s~~~~~~~~~~~i~~~~----~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 161 (207)
++++++++.+ ..|+..+.... ++.|+++||||+|+.+.+.+ ...++..+++.++. +|+++||++
T Consensus 80 ~~~~~s~~~~-~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v----------~~~~~~~~~~~~~~-~~~e~SAk~ 147 (190)
T cd04144 80 ITSRSTFERV-ERFREQIQRVKDESAADVPIMIVGNKCDKVYEREV----------STEEGAALARRLGC-EFIEASAKT 147 (190)
T ss_pred CCCHHHHHHH-HHHHHHHHHHhcccCCCCCEEEEEEChhccccCcc----------CHHHHHHHHHHhCC-EEEEecCCC
Confidence 9999999998 78887775432 47899999999999765553 77788899999997 899999999
Q ss_pred CCCHHHHHHHHHHHHhCCCc--------chhhhcccCCCeEEe
Q 028595 162 QQNVKAVFDAAIKVVIKPPQ--------KQKEKKKKQRGCLLN 196 (207)
Q Consensus 162 ~~~i~~~f~~i~~~~~~~~~--------~~~~~~~~~~~c~~~ 196 (207)
|.|++++|+++++.+..+.+ ...++++++++|++|
T Consensus 148 ~~~v~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (190)
T cd04144 148 NVNVERAFYTLVRALRQQRQGGQGPKGGPTKKKEKKKRKCVIM 190 (190)
T ss_pred CCCHHHHHHHHHHHHHHhhcccCCCcCCCCCcccccccCceeC
Confidence 99999999999998874322 333455566777764
No 18
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=4.8e-38 Score=226.16 Aligned_cols=164 Identities=27% Similarity=0.468 Sum_probs=155.5
Q ss_pred ccceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEE
Q 028595 2 ELLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF 80 (207)
Q Consensus 2 ~~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ 80 (207)
+..+||+++|+++|| ||-|+.||..+.|..+..+|+|.++ ...+.++++.+..+||||+|||+|+.....||++|.++
T Consensus 12 dylFKiVliGDS~VG-KsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgAvGA 90 (222)
T KOG0087|consen 12 DYLFKIVLIGDSAVG-KSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGAVGA 90 (222)
T ss_pred ceEEEEEEeCCCccc-hhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhccccee
Confidence 468999999999999 9999999999999999999999999 55899999999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEecc
Q 028595 81 VLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSS 159 (207)
Q Consensus 81 i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa 159 (207)
++|||++.+.+|+.+ ..|+.+++.+. +++++++||||+||.+.+.+ ..++++.++++.+. .|+|+||
T Consensus 91 llVYDITr~~Tfenv-~rWL~ELRdhad~nivimLvGNK~DL~~lraV----------~te~~k~~Ae~~~l-~f~EtSA 158 (222)
T KOG0087|consen 91 LLVYDITRRQTFENV-ERWLKELRDHADSNIVIMLVGNKSDLNHLRAV----------PTEDGKAFAEKEGL-FFLETSA 158 (222)
T ss_pred EEEEechhHHHHHHH-HHHHHHHHhcCCCCeEEEEeecchhhhhcccc----------chhhhHhHHHhcCc-eEEEecc
Confidence 999999999999999 89999999988 79999999999999887764 99999999999998 9999999
Q ss_pred CCCCCHHHHHHHHHHHHhC
Q 028595 160 KTQQNVKAVFDAAIKVVIK 178 (207)
Q Consensus 160 ~~~~~i~~~f~~i~~~~~~ 178 (207)
++..|++++|..++..+..
T Consensus 159 l~~tNVe~aF~~~l~~I~~ 177 (222)
T KOG0087|consen 159 LDATNVEKAFERVLTEIYK 177 (222)
T ss_pred cccccHHHHHHHHHHHHHH
Confidence 9999999999999988864
No 19
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=100.00 E-value=1.1e-37 Score=232.39 Aligned_cols=161 Identities=25% Similarity=0.469 Sum_probs=146.9
Q ss_pred eEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEEE
Q 028595 6 KLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 84 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 84 (207)
.|+++|..+|| ||||+++|..+.|...|.+|++..+ ...+.+++..+.+++|||+|+++|++++..|++++|++|+||
T Consensus 2 ~vvvlG~~gVG-KTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVf 80 (202)
T cd04120 2 QVIIIGSRGVG-KTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVY 80 (202)
T ss_pred EEEEECcCCCC-HHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEE
Confidence 58999999999 9999999999999999999998776 557888999999999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHh-CCcEEEEeccCCC
Q 028595 85 SLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI-GASYYIECSSKTQ 162 (207)
Q Consensus 85 d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~e~Sa~~~ 162 (207)
|+++++|++++ ..|+..+.... +++|+++||||+|+.+.++ +..++++++++.+ ++ .|++|||++|
T Consensus 81 Dvtd~~Sf~~l-~~w~~~i~~~~~~~~piilVgNK~DL~~~~~----------v~~~~~~~~a~~~~~~-~~~etSAktg 148 (202)
T cd04120 81 DITKKETFDDL-PKWMKMIDKYASEDAELLLVGNKLDCETDRE----------ISRQQGEKFAQQITGM-RFCEASAKDN 148 (202)
T ss_pred ECcCHHHHHHH-HHHHHHHHHhCCCCCcEEEEEECcccccccc----------cCHHHHHHHHHhcCCC-EEEEecCCCC
Confidence 99999999999 78999887765 5899999999999976665 3888999999886 65 8999999999
Q ss_pred CCHHHHHHHHHHHHhCC
Q 028595 163 QNVKAVFDAAIKVVIKP 179 (207)
Q Consensus 163 ~~i~~~f~~i~~~~~~~ 179 (207)
.||+++|+++++.+...
T Consensus 149 ~gV~e~F~~l~~~~~~~ 165 (202)
T cd04120 149 FNVDEIFLKLVDDILKK 165 (202)
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 99999999999988654
No 20
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=100.00 E-value=3.6e-37 Score=225.65 Aligned_cols=171 Identities=43% Similarity=0.730 Sum_probs=149.6
Q ss_pred eeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEEE
Q 028595 5 AKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 84 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 84 (207)
+||+++|.+++| ||||+++|..+.+...|.||++..+...+.+++..+.+.||||+|++++..++..+++++|++|+||
T Consensus 2 ~ki~vvG~~~vG-KTsl~~~~~~~~f~~~~~pt~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~ 80 (175)
T cd01874 2 IKCVVVGDGAVG-KTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCF 80 (175)
T ss_pred eEEEEECCCCCC-HHHHHHHHHcCCCCCCCCCceeeeeEEEEEECCEEEEEEEEECCCccchhhhhhhhcccCCEEEEEE
Confidence 699999999999 9999999999999889999999888777788999999999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccC--CCCCcccCHHHHHHHHHHhCCcEEEEeccCCC
Q 028595 85 SLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLAD--HPGLVPVTTAQGEELRKQIGASYYIECSSKTQ 162 (207)
Q Consensus 85 d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~ 162 (207)
|++++++++.+...|+..+....+++|+++||||+|+.+....... ....+.+..++++++++..+...|+++||++|
T Consensus 81 d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~~~e~SA~tg 160 (175)
T cd01874 81 SVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVKYVECSALTQ 160 (175)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcEEEEecCCCC
Confidence 9999999999955699888876678999999999998654321110 11224578899999999988558999999999
Q ss_pred CCHHHHHHHHHHHH
Q 028595 163 QNVKAVFDAAIKVV 176 (207)
Q Consensus 163 ~~i~~~f~~i~~~~ 176 (207)
.|++++|+.++...
T Consensus 161 ~~v~~~f~~~~~~~ 174 (175)
T cd01874 161 KGLKNVFDEAILAA 174 (175)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999998854
No 21
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=6.7e-38 Score=212.75 Aligned_cols=167 Identities=28% Similarity=0.522 Sum_probs=155.2
Q ss_pred ccceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeee-EEEECCeEEEEEEEeCCCCccccccccceecCCcEE
Q 028595 2 ELLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSA-NVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF 80 (207)
Q Consensus 2 ~~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ 80 (207)
+.++|+.++|++.+| ||+|+.++++..|.+.+..|.|..|.. .+....+.+.+++|||+|+|+|+.+...|+++++++
T Consensus 19 DymfKlliiGnssvG-KTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyRgamgf 97 (193)
T KOG0093|consen 19 DYMFKLLIIGNSSVG-KTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYRGAMGF 97 (193)
T ss_pred cceeeEEEEccCCcc-chhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhhccceE
Confidence 357899999999999 999999999999999999999999844 666677899999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEecc
Q 028595 81 VLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSS 159 (207)
Q Consensus 81 i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa 159 (207)
|++||++|.+|+..+ +.|...|..++ .+.|+++||||+|+..++.+ +.+.++.+++.+|. .|||+||
T Consensus 98 iLmyDitNeeSf~sv-qdw~tqIktysw~naqvilvgnKCDmd~eRvi----------s~e~g~~l~~~LGf-efFEtSa 165 (193)
T KOG0093|consen 98 ILMYDITNEESFNSV-QDWITQIKTYSWDNAQVILVGNKCDMDSERVI----------SHERGRQLADQLGF-EFFETSA 165 (193)
T ss_pred EEEEecCCHHHHHHH-HHHHHHheeeeccCceEEEEecccCCccceee----------eHHHHHHHHHHhCh-HHhhhcc
Confidence 999999999999999 99999999988 79999999999999888874 99999999999999 9999999
Q ss_pred CCCCCHHHHHHHHHHHHhCCCc
Q 028595 160 KTQQNVKAVFDAAIKVVIKPPQ 181 (207)
Q Consensus 160 ~~~~~i~~~f~~i~~~~~~~~~ 181 (207)
+.+.|++++|+.++..+-+...
T Consensus 166 K~NinVk~~Fe~lv~~Ic~kms 187 (193)
T KOG0093|consen 166 KENINVKQVFERLVDIICDKMS 187 (193)
T ss_pred cccccHHHHHHHHHHHHHHHhh
Confidence 9999999999999988866543
No 22
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=100.00 E-value=4.9e-37 Score=222.67 Aligned_cols=178 Identities=53% Similarity=0.853 Sum_probs=163.8
Q ss_pred cceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEEC-CeEEEEEEEeCCCCccccccccceecCCcEEE
Q 028595 3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAE-GTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 81 (207)
Q Consensus 3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i 81 (207)
...|+++||+..+| ||+|+..+..+.|...|.||+.++|+..+.++ |+.+.+.+|||+||+.|+.+++..|.++|+++
T Consensus 3 ~~~K~VvVGDga~G-KT~ll~~~t~~~fp~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl 81 (198)
T KOG0393|consen 3 RRIKCVVVGDGAVG-KTCLLISYTTNAFPEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFL 81 (198)
T ss_pred eeeEEEEECCCCcC-ceEEEEEeccCcCcccccCeEEccceEEEEecCCCEEEEeeeecCCCcccccccccCCCCCCEEE
Confidence 46899999999999 99999999999999999999999999999995 99999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccc--cCCCCCcccCHHHHHHHHHHhCCcEEEEecc
Q 028595 82 LAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYL--ADHPGLVPVTTAQGEELRKQIGASYYIECSS 159 (207)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa 159 (207)
+||++.+++|++++...|+.++.+++|++|+++||+|.||.++...+ .......+++.++++.++++.|...|+||||
T Consensus 82 ~cfsv~~p~S~~nv~~kW~pEi~~~cp~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y~EcSa 161 (198)
T KOG0393|consen 82 LCFSVVSPESFENVKSKWIPEIKHHCPNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKYLECSA 161 (198)
T ss_pred EEEEcCChhhHHHHHhhhhHHHHhhCCCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCcceeeeehh
Confidence 99999999999999999999999999999999999999998543221 1233456689999999999999889999999
Q ss_pred CCCCCHHHHHHHHHHHHhCCCc
Q 028595 160 KTQQNVKAVFDAAIKVVIKPPQ 181 (207)
Q Consensus 160 ~~~~~i~~~f~~i~~~~~~~~~ 181 (207)
++..|+.++|+..++.++.+++
T Consensus 162 ~tq~~v~~vF~~a~~~~l~~~~ 183 (198)
T KOG0393|consen 162 LTQKGVKEVFDEAIRAALRPPQ 183 (198)
T ss_pred hhhCCcHHHHHHHHHHHhcccc
Confidence 9999999999999999998876
No 23
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=100.00 E-value=3.5e-37 Score=228.02 Aligned_cols=185 Identities=42% Similarity=0.703 Sum_probs=158.1
Q ss_pred eeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEEC-CeEEEEEEEeCCCCccccccccceecCCcEEEEE
Q 028595 5 AKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAE-GTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA 83 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v 83 (207)
.||+++|.+++| ||||+++|.++.+...+.||++..+...+..+ +..+.+.+|||+|++++..++..+++++|++++|
T Consensus 1 ~ki~vvG~~~vG-KTsli~~l~~~~~~~~~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v 79 (187)
T cd04132 1 KKIVVVGDGGCG-KTCLLIVYSQGKFPEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLIC 79 (187)
T ss_pred CeEEEECCCCCC-HHHHHHHHHhCcCCCCCCCeeeeeeEEEEEecCCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEE
Confidence 489999999999 99999999999999899999988886666665 7789999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCCCC
Q 028595 84 FSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ 163 (207)
Q Consensus 84 ~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~ 163 (207)
||+++++|++.+...|+..+....++.|+++||||+|+.+... ....+..+++++++..++..+++++||++|.
T Consensus 80 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~------~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~ 153 (187)
T cd04132 80 YAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDKN------LDRKVTPAQAESVAKKQGAFAYLECSAKTME 153 (187)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhhCcc------ccCCcCHHHHHHHHHHcCCcEEEEccCCCCC
Confidence 9999999999996678888877667899999999999865431 1123578899999999987789999999999
Q ss_pred CHHHHHHHHHHHHhCCCcch-hhhcccCCCeEEe
Q 028595 164 NVKAVFDAAIKVVIKPPQKQ-KEKKKKQRGCLLN 196 (207)
Q Consensus 164 ~i~~~f~~i~~~~~~~~~~~-~~~~~~~~~c~~~ 196 (207)
|++++|+.+++.+....... ..+++++.+|++|
T Consensus 154 ~v~~~f~~l~~~~~~~~~~~~~~~~~~~~~c~~~ 187 (187)
T cd04132 154 NVEEVFDTAIEEALKKEGKAIFKKKKKKRKCVVL 187 (187)
T ss_pred CHHHHHHHHHHHHHhhhhhhhhccCCCCcccccC
Confidence 99999999999998766543 3345556777654
No 24
>PTZ00369 Ras-like protein; Provisional
Probab=100.00 E-value=7.4e-37 Score=226.68 Aligned_cols=180 Identities=29% Similarity=0.443 Sum_probs=156.4
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEE
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA 83 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v 83 (207)
.+||+++|.+++| ||||++++.++.+...+.||.+..+...+.+++..+.+.+|||+|++++..++..+++++|++++|
T Consensus 5 ~~Ki~iiG~~~~G-KTsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iilv 83 (189)
T PTZ00369 5 EYKLVVVGGGGVG-KSALTIQFIQNHFIDEYDPTIEDSYRKQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLCV 83 (189)
T ss_pred ceEEEEECCCCCC-HHHHHHHHhcCCCCcCcCCchhhEEEEEEEECCEEEEEEEEeCCCCccchhhHHHHhhcCCEEEEE
Confidence 4899999999999 999999999999988999999988888888999999999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcC--CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCC
Q 028595 84 FSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT 161 (207)
Q Consensus 84 ~d~~~~~s~~~~~~~~~~~i~~~~--~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 161 (207)
||++++++++.+ ..|...+.... +++|+++|+||+|+.+.+. +..+++..+++.++. +++++||++
T Consensus 84 ~D~s~~~s~~~~-~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~----------i~~~~~~~~~~~~~~-~~~e~Sak~ 151 (189)
T PTZ00369 84 YSITSRSSFEEI-ASFREQILRVKDKDRVPMILVGNKCDLDSERQ----------VSTGEGQELAKSFGI-PFLETSAKQ 151 (189)
T ss_pred EECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECcccccccc----------cCHHHHHHHHHHhCC-EEEEeeCCC
Confidence 999999999999 78888776543 4789999999999876554 377888999998887 999999999
Q ss_pred CCCHHHHHHHHHHHHhCC---CcchhhhcccCCCeEEe
Q 028595 162 QQNVKAVFDAAIKVVIKP---PQKQKEKKKKQRGCLLN 196 (207)
Q Consensus 162 ~~~i~~~f~~i~~~~~~~---~~~~~~~~~~~~~c~~~ 196 (207)
|.|++++|+++++.+.+. ....+.++++.+-|+++
T Consensus 152 ~~gi~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 189 (189)
T PTZ00369 152 RVNVDEAFYELVREIRKYLKEDMPSQKQKKKGGLCLIL 189 (189)
T ss_pred CCCHHHHHHHHHHHHHHHhhccchhhhhhccCCeeeeC
Confidence 999999999999888654 23334445555667764
No 25
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=7.9e-38 Score=213.87 Aligned_cols=165 Identities=25% Similarity=0.393 Sum_probs=155.9
Q ss_pred ccceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEE
Q 028595 2 ELLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF 80 (207)
Q Consensus 2 ~~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ 80 (207)
+..+|++++|..+.| ||+|+++|+.+++.++...|+|.+| +..+.++++.++++||||+|||+|++..+.||+++-+.
T Consensus 7 DyLfKfl~iG~aGtG-KSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGAAGA 85 (214)
T KOG0086|consen 7 DYLFKFLVIGSAGTG-KSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGA 85 (214)
T ss_pred hhhheeEEeccCCCC-hhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccccce
Confidence 357899999999999 9999999999999999999999999 67899999999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEecc
Q 028595 81 VLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSS 159 (207)
Q Consensus 81 i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa 159 (207)
++|||++++++|+.+ ..|+..++... +++-++++|||.|+.+.+++ +..++..|+++..+ .+.|+||
T Consensus 86 lLVYD~TsrdsfnaL-tnWL~DaR~lAs~nIvviL~GnKkDL~~~R~V----------tflEAs~FaqEnel-~flETSa 153 (214)
T KOG0086|consen 86 LLVYDITSRDSFNAL-TNWLTDARTLASPNIVVILCGNKKDLDPEREV----------TFLEASRFAQENEL-MFLETSA 153 (214)
T ss_pred EEEEeccchhhHHHH-HHHHHHHHhhCCCcEEEEEeCChhhcChhhhh----------hHHHHHhhhcccce-eeeeecc
Confidence 999999999999999 89999998877 68889999999999999885 99999999999998 9999999
Q ss_pred CCCCCHHHHHHHHHHHHhCC
Q 028595 160 KTQQNVKAVFDAAIKVVIKP 179 (207)
Q Consensus 160 ~~~~~i~~~f~~i~~~~~~~ 179 (207)
++|+|+++.|-...+.++..
T Consensus 154 ~TGeNVEEaFl~c~~tIl~k 173 (214)
T KOG0086|consen 154 LTGENVEEAFLKCARTILNK 173 (214)
T ss_pred cccccHHHHHHHHHHHHHHH
Confidence 99999999999999988754
No 26
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=100.00 E-value=6.8e-37 Score=223.58 Aligned_cols=164 Identities=22% Similarity=0.357 Sum_probs=149.2
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEE
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA 83 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v 83 (207)
.+||+++|.++|| ||||++++..+.+...+.||++..+...+.+++..+.+.+|||+|++.++.++..+++++|++|+|
T Consensus 2 ~~ki~vvG~~~vG-KTsL~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv 80 (172)
T cd04141 2 EYKIVMLGAGGVG-KSAVTMQFISHSFPDYHDPTIEDAYKQQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIIC 80 (172)
T ss_pred ceEEEEECCCCCc-HHHHHHHHHhCCCCCCcCCcccceEEEEEEECCEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEE
Confidence 3699999999999 999999999999988899999988877888899999999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcC--CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCC
Q 028595 84 FSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT 161 (207)
Q Consensus 84 ~d~~~~~s~~~~~~~~~~~i~~~~--~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 161 (207)
||+++++|++.+ ..|...+.+.. +++|+++||||+|+.+.+. +..++++.+++.+++ +|++|||++
T Consensus 81 ~d~~~~~Sf~~~-~~~~~~i~~~~~~~~~piilvgNK~Dl~~~~~----------v~~~~~~~~a~~~~~-~~~e~Sa~~ 148 (172)
T cd04141 81 YSVTDRHSFQEA-SEFKKLITRVRLTEDIPLVLVGNKVDLESQRQ----------VTTEEGRNLAREFNC-PFFETSAAL 148 (172)
T ss_pred EECCchhHHHHH-HHHHHHHHHhcCCCCCCEEEEEEChhhhhcCc----------cCHHHHHHHHHHhCC-EEEEEecCC
Confidence 999999999999 67887776643 5799999999999976655 388899999999998 999999999
Q ss_pred CCCHHHHHHHHHHHHhCCC
Q 028595 162 QQNVKAVFDAAIKVVIKPP 180 (207)
Q Consensus 162 ~~~i~~~f~~i~~~~~~~~ 180 (207)
|.||+++|+++++.+.+..
T Consensus 149 ~~~v~~~f~~l~~~~~~~~ 167 (172)
T cd04141 149 RHYIDDAFHGLVREIRRKE 167 (172)
T ss_pred CCCHHHHHHHHHHHHHHhc
Confidence 9999999999999887643
No 27
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=100.00 E-value=2.6e-36 Score=220.85 Aligned_cols=170 Identities=52% Similarity=0.848 Sum_probs=148.0
Q ss_pred eeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEEE
Q 028595 5 AKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 84 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 84 (207)
+||+++|.++|| ||||+.++..+.+...|.||++..+...+.+++..+.+.+|||+|++.+..++..+++++|++|+||
T Consensus 2 ~ki~iiG~~~vG-KSsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (174)
T cd01871 2 IKCVVVGDGAVG-KTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICF 80 (174)
T ss_pred eEEEEECCCCCC-HHHHHHHHhcCCCCCcCCCcceeeeEEEEEECCEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEE
Confidence 699999999999 9999999999999999999998888777888999999999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCccccc--CCCCCcccCHHHHHHHHHHhCCcEEEEeccCCC
Q 028595 85 SLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQ 162 (207)
Q Consensus 85 d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~ 162 (207)
|+++++|++.+...|+..+....++.|+++||||+|+.+.+.... .....+.+..+++++++++++..+|+|+||++|
T Consensus 81 d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~ 160 (174)
T cd01871 81 SLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 160 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEEEEeccccc
Confidence 999999999985578888877667899999999999965321100 011224468999999999999669999999999
Q ss_pred CCHHHHHHHHHHH
Q 028595 163 QNVKAVFDAAIKV 175 (207)
Q Consensus 163 ~~i~~~f~~i~~~ 175 (207)
.|++++|+.+++.
T Consensus 161 ~~i~~~f~~l~~~ 173 (174)
T cd01871 161 KGLKTVFDEAIRA 173 (174)
T ss_pred CCHHHHHHHHHHh
Confidence 9999999999864
No 28
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=3.1e-36 Score=225.39 Aligned_cols=164 Identities=23% Similarity=0.321 Sum_probs=146.2
Q ss_pred eeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEEC-CeEEEEEEEeCCCCccccccccceecCCcEEEE
Q 028595 5 AKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAE-GTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 82 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~ 82 (207)
+||+++|.+++| ||||+++|+++.+...+.||++.++ ...+.++ +..+.+.+|||+|++.+..+++.+++++|++|+
T Consensus 1 ~KivivG~~~vG-KTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~il 79 (201)
T cd04107 1 LKVLVIGDLGVG-KTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAII 79 (201)
T ss_pred CEEEEECCCCCC-HHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEE
Confidence 589999999999 9999999999999889999999776 4467777 789999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhc-----CCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEe
Q 028595 83 AFSLVSRASYENVLKKWIPELQHY-----SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIEC 157 (207)
Q Consensus 83 v~d~~~~~s~~~~~~~~~~~i~~~-----~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~ 157 (207)
|||++++++++.+ ..|+..+... ..++|++|||||+|+.+.+. +..++++++++.++..+|+++
T Consensus 80 v~D~t~~~s~~~~-~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~e~ 148 (201)
T cd04107 80 VFDVTRPSTFEAV-LKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLA----------KDGEQMDQFCKENGFIGWFET 148 (201)
T ss_pred EEECCCHHHHHHH-HHHHHHHHHhhcccCCCCCcEEEEEECCCcccccc----------cCHHHHHHHHHHcCCceEEEE
Confidence 9999999999999 7888877643 14789999999999975444 378899999999995599999
Q ss_pred ccCCCCCHHHHHHHHHHHHhCCC
Q 028595 158 SSKTQQNVKAVFDAAIKVVIKPP 180 (207)
Q Consensus 158 Sa~~~~~i~~~f~~i~~~~~~~~ 180 (207)
||++|.|++++|+++++.+....
T Consensus 149 Sak~~~~v~e~f~~l~~~l~~~~ 171 (201)
T cd04107 149 SAKEGINIEEAMRFLVKNILAND 171 (201)
T ss_pred eCCCCCCHHHHHHHHHHHHHHhc
Confidence 99999999999999999987653
No 29
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=100.00 E-value=6.3e-36 Score=217.26 Aligned_cols=162 Identities=23% Similarity=0.456 Sum_probs=147.0
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeee-eEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEE
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 82 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~ 82 (207)
.+||+++|.+++| ||||+++|.++.+...+.+|++.++. ..+.+++..+.+.+|||||++.+..++..+++++|++|+
T Consensus 2 ~~ki~iiG~~~vG-KTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~il 80 (166)
T cd04122 2 IFKYIIIGDMGVG-KSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALM 80 (166)
T ss_pred ceEEEEECCCCCC-HHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEE
Confidence 4799999999999 99999999999999899999988774 467788989999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCC
Q 028595 83 AFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT 161 (207)
Q Consensus 83 v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 161 (207)
|||++++++++.+ ..|+..+.... ++.|+++||||+|+.+.+.+ ..++++++++..++ +++++||++
T Consensus 81 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~----------~~~~~~~~~~~~~~-~~~e~Sa~~ 148 (166)
T cd04122 81 VYDITRRSTYNHL-SSWLTDARNLTNPNTVIFLIGNKADLEAQRDV----------TYEEAKQFADENGL-LFLECSAKT 148 (166)
T ss_pred EEECCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECcccccccCc----------CHHHHHHHHHHcCC-EEEEEECCC
Confidence 9999999999999 78988876654 67999999999999876653 78899999999988 999999999
Q ss_pred CCCHHHHHHHHHHHHhC
Q 028595 162 QQNVKAVFDAAIKVVIK 178 (207)
Q Consensus 162 ~~~i~~~f~~i~~~~~~ 178 (207)
|.|++++|.++++.+.+
T Consensus 149 ~~~i~e~f~~l~~~~~~ 165 (166)
T cd04122 149 GENVEDAFLETAKKIYQ 165 (166)
T ss_pred CCCHHHHHHHHHHHHhh
Confidence 99999999999988754
No 30
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=100.00 E-value=1.3e-35 Score=221.71 Aligned_cols=164 Identities=29% Similarity=0.442 Sum_probs=148.6
Q ss_pred cceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEE
Q 028595 3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 81 (207)
Q Consensus 3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i 81 (207)
..+||+++|.+++| ||||+++|.++.+...+.||++..+ ...+.+++..+.+.|||+||++.+..++..+++++|+++
T Consensus 5 ~~~kivvvG~~~vG-KTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~ii 83 (199)
T cd04110 5 HLFKLLIIGDSGVG-KSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVI 83 (199)
T ss_pred ceeEEEEECCCCCC-HHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCchhHHHHHHHHhCCCcEEE
Confidence 35799999999999 9999999999998888999998766 446777888899999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCC
Q 028595 82 LAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT 161 (207)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 161 (207)
+|||++++++++.+ ..|+..+....+..|++|||||+|+.+...+ ..+++..+++.++. +++++||++
T Consensus 84 lv~D~~~~~s~~~~-~~~~~~i~~~~~~~piivVgNK~Dl~~~~~~----------~~~~~~~~~~~~~~-~~~e~Sa~~ 151 (199)
T cd04110 84 VVYDVTNGESFVNV-KRWLQEIEQNCDDVCKVLVGNKNDDPERKVV----------ETEDAYKFAGQMGI-SLFETSAKE 151 (199)
T ss_pred EEEECCCHHHHHHH-HHHHHHHHHhCCCCCEEEEEECccccccccc----------CHHHHHHHHHHcCC-EEEEEECCC
Confidence 99999999999999 7899998877788999999999999766553 77889999999887 899999999
Q ss_pred CCCHHHHHHHHHHHHhCC
Q 028595 162 QQNVKAVFDAAIKVVIKP 179 (207)
Q Consensus 162 ~~~i~~~f~~i~~~~~~~ 179 (207)
|.||+++|+++++.++..
T Consensus 152 ~~gi~~lf~~l~~~~~~~ 169 (199)
T cd04110 152 NINVEEMFNCITELVLRA 169 (199)
T ss_pred CcCHHHHHHHHHHHHHHh
Confidence 999999999999999754
No 31
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=1.6e-36 Score=209.53 Aligned_cols=163 Identities=27% Similarity=0.393 Sum_probs=146.3
Q ss_pred cceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeee-EEE-ECCeEEEEEEEeCCCCccccccccceecCCcEE
Q 028595 3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSA-NVV-AEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF 80 (207)
Q Consensus 3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~-~~~-~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ 80 (207)
..+++++||++-|| ||+|++.|+.+++..-..||+|.+|-. .+. -+|..+++++|||+|||+++++.+.||+++-++
T Consensus 7 yqfrlivigdstvg-kssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrnsvgv 85 (213)
T KOG0091|consen 7 YQFRLIVIGDSTVG-KSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNSVGV 85 (213)
T ss_pred EEEEEEEEcCCccc-HHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcccce
Confidence 35789999999999 999999999999999999999988733 333 378899999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhcC--CCC-cEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEe
Q 028595 81 VLAFSLVSRASYENVLKKWIPELQHYS--PGV-PVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIEC 157 (207)
Q Consensus 81 i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~-piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~ 157 (207)
++|||++|++||+++ ..|..+...+. |.. -+.+||+|+|+...+++ +.++++.++..+|+ .|+|+
T Consensus 86 llvyditnr~sfehv-~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqV----------t~EEaEklAa~hgM-~FVET 153 (213)
T KOG0091|consen 86 LLVYDITNRESFEHV-ENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQV----------TAEEAEKLAASHGM-AFVET 153 (213)
T ss_pred EEEEeccchhhHHHH-HHHHHHHHHhcCCCCeeEEEEeccccchhhhccc----------cHHHHHHHHHhcCc-eEEEe
Confidence 999999999999999 89988776544 444 45799999999988885 99999999999999 99999
Q ss_pred ccCCCCCHHHHHHHHHHHHhC
Q 028595 158 SSKTQQNVKAVFDAAIKVVIK 178 (207)
Q Consensus 158 Sa~~~~~i~~~f~~i~~~~~~ 178 (207)
||++|.|+++.|.-+.+.+..
T Consensus 154 Sak~g~NVeEAF~mlaqeIf~ 174 (213)
T KOG0091|consen 154 SAKNGCNVEEAFDMLAQEIFQ 174 (213)
T ss_pred cccCCCcHHHHHHHHHHHHHH
Confidence 999999999999999888763
No 32
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=100.00 E-value=3.8e-35 Score=214.59 Aligned_cols=171 Identities=51% Similarity=0.842 Sum_probs=149.7
Q ss_pred EEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEEEeC
Q 028595 7 LACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSL 86 (207)
Q Consensus 7 i~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~ 86 (207)
|+++|.+++| ||||+++|.++.+...+.||.+..+...+.+++..+.+.+|||+|++.+..++..+++++|++|+|||+
T Consensus 1 i~i~G~~~vG-KTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~ 79 (174)
T smart00174 1 LVVVGDGAVG-KTCLLISYTTNAFPEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSV 79 (174)
T ss_pred CEEECCCCCC-HHHHHHHHHhCCCCCCCCCcEEeeeeEEEEECCEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEEC
Confidence 5899999999 999999999999998999999888887888899999999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCccccc--CCCCCcccCHHHHHHHHHHhCCcEEEEeccCCCCC
Q 028595 87 VSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQN 164 (207)
Q Consensus 87 ~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 164 (207)
++++|++.+...|+..+....++.|+++||||+|+.+...... .......+..++++++++.++..+|+++||++|.|
T Consensus 80 ~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 159 (174)
T smart00174 80 DSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYLECSALTQEG 159 (174)
T ss_pred CCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcCCcEEEEecCCCCCC
Confidence 9999999986679999988778999999999999976432110 01112346888999999999976899999999999
Q ss_pred HHHHHHHHHHHHhC
Q 028595 165 VKAVFDAAIKVVIK 178 (207)
Q Consensus 165 i~~~f~~i~~~~~~ 178 (207)
++++|+.+++.+.+
T Consensus 160 v~~lf~~l~~~~~~ 173 (174)
T smart00174 160 VREVFEEAIRAALN 173 (174)
T ss_pred HHHHHHHHHHHhcC
Confidence 99999999988765
No 33
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=100.00 E-value=4e-35 Score=212.57 Aligned_cols=160 Identities=26% Similarity=0.441 Sum_probs=144.6
Q ss_pred eeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEEE
Q 028595 5 AKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 84 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 84 (207)
+||+++|.+++| ||||+++++.+.+...+.||++..+...+.+++..+.+.+|||||++.+.+++..+++++|++++||
T Consensus 2 ~ki~~~G~~~~G-KTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~ 80 (164)
T cd04175 2 YKLVVLGSGGVG-KSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVY 80 (164)
T ss_pred cEEEEECCCCCC-HHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEE
Confidence 699999999999 9999999999998888999999888888888999999999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhcC--CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCCC
Q 028595 85 SLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQ 162 (207)
Q Consensus 85 d~~~~~s~~~~~~~~~~~i~~~~--~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~ 162 (207)
|+++.++++++ ..|+..+.... ++.|+++|+||+|+.+...+ ..++++.+++.+++ +++++||++|
T Consensus 81 d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~----------~~~~~~~~~~~~~~-~~~~~Sa~~~ 148 (164)
T cd04175 81 SITAQSTFNDL-QDLREQILRVKDTEDVPMILVGNKCDLEDERVV----------GKEQGQNLARQWGC-AFLETSAKAK 148 (164)
T ss_pred ECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECCcchhccEE----------cHHHHHHHHHHhCC-EEEEeeCCCC
Confidence 99999999999 67877775433 68999999999999776553 77778899999997 9999999999
Q ss_pred CCHHHHHHHHHHHHh
Q 028595 163 QNVKAVFDAAIKVVI 177 (207)
Q Consensus 163 ~~i~~~f~~i~~~~~ 177 (207)
.|++++|+++++.+.
T Consensus 149 ~~v~~~~~~l~~~l~ 163 (164)
T cd04175 149 INVNEIFYDLVRQIN 163 (164)
T ss_pred CCHHHHHHHHHHHhh
Confidence 999999999987653
No 34
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=100.00 E-value=2.5e-35 Score=213.13 Aligned_cols=159 Identities=33% Similarity=0.645 Sum_probs=148.3
Q ss_pred eEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEEE
Q 028595 6 KLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 84 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 84 (207)
||+++|++++| ||||+++|.++.+...+.||.+.+. ...+.+++..+.+.+||++|++.+..+...+++++|++|+||
T Consensus 1 Ki~vvG~~~vG-Ktsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~f 79 (162)
T PF00071_consen 1 KIVVVGDSGVG-KTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVF 79 (162)
T ss_dssp EEEEEESTTSS-HHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEE
T ss_pred CEEEECCCCCC-HHHHHHHHHhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 89999999999 9999999999999999999996555 678899999999999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhcCC-CCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCCCC
Q 028595 85 SLVSRASYENVLKKWIPELQHYSP-GVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ 163 (207)
Q Consensus 85 d~~~~~s~~~~~~~~~~~i~~~~~-~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~ 163 (207)
|+++++|++.+ ..|++.+....+ ++|++|+|||.|+.+.+. ++.++++++++.++. +|+++||+++.
T Consensus 80 d~~~~~S~~~~-~~~~~~i~~~~~~~~~iivvg~K~D~~~~~~----------v~~~~~~~~~~~~~~-~~~e~Sa~~~~ 147 (162)
T PF00071_consen 80 DVTDEESFENL-KKWLEEIQKYKPEDIPIIVVGNKSDLSDERE----------VSVEEAQEFAKELGV-PYFEVSAKNGE 147 (162)
T ss_dssp ETTBHHHHHTH-HHHHHHHHHHSTTTSEEEEEEETTTGGGGSS----------SCHHHHHHHHHHTTS-EEEEEBTTTTT
T ss_pred ccccccccccc-ccccccccccccccccceeeecccccccccc----------chhhHHHHHHHHhCC-EEEEEECCCCC
Confidence 99999999999 799999998886 799999999999988665 488999999999995 99999999999
Q ss_pred CHHHHHHHHHHHHh
Q 028595 164 NVKAVFDAAIKVVI 177 (207)
Q Consensus 164 ~i~~~f~~i~~~~~ 177 (207)
|+.++|..+++.+.
T Consensus 148 ~v~~~f~~~i~~i~ 161 (162)
T PF00071_consen 148 NVKEIFQELIRKIL 161 (162)
T ss_dssp THHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999999875
No 35
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=100.00 E-value=4.4e-35 Score=211.87 Aligned_cols=159 Identities=26% Similarity=0.447 Sum_probs=143.5
Q ss_pred eeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEEE
Q 028595 5 AKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 84 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 84 (207)
+||+++|.+++| ||||++++..+.+...+.||.++.+...+.+++..+.+.+|||||++++..++..+++++|++++||
T Consensus 2 ~ki~i~G~~~vG-KTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (163)
T cd04136 2 YKVVVLGSGGVG-KSALTVQFVQGIFVEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVY 80 (163)
T ss_pred eEEEEECCCCCC-HHHHHHHHHhCCCCcccCCchhhhEEEEEEECCEEEEEEEEECCCccccchHHHHHhhcCCEEEEEE
Confidence 699999999999 9999999999999888999998777778888999999999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhcC--CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCCC
Q 028595 85 SLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQ 162 (207)
Q Consensus 85 d~~~~~s~~~~~~~~~~~i~~~~--~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~ 162 (207)
|++++++++.+ ..|...+.... ++.|+++|+||+|+.+.+.+ ..+++..+++.++. +++++||++|
T Consensus 81 d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~----------~~~~~~~~~~~~~~-~~~~~Sa~~~ 148 (163)
T cd04136 81 SITSQSSFNDL-QDLREQILRVKDTENVPMVLVGNKCDLEDERVV----------SREEGQALARQWGC-PFYETSAKSK 148 (163)
T ss_pred ECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECcccccccee----------cHHHHHHHHHHcCC-eEEEecCCCC
Confidence 99999999998 78888776543 57999999999999765543 77788889998886 9999999999
Q ss_pred CCHHHHHHHHHHHH
Q 028595 163 QNVKAVFDAAIKVV 176 (207)
Q Consensus 163 ~~i~~~f~~i~~~~ 176 (207)
.|++++|+++++.+
T Consensus 149 ~~v~~l~~~l~~~~ 162 (163)
T cd04136 149 INVDEVFADLVRQI 162 (163)
T ss_pred CCHHHHHHHHHHhc
Confidence 99999999998765
No 36
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=100.00 E-value=5.7e-35 Score=220.70 Aligned_cols=161 Identities=23% Similarity=0.287 Sum_probs=143.9
Q ss_pred eeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECC-eEEEEEEEeCCCCccccccccceecCCcEEEE
Q 028595 5 AKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEG-TTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 82 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~-~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~ 82 (207)
+||+++|.+++| ||||+++|.++.+...|.||++.++ ...+.+++ ..+.+.||||+|++.+..++..+++++|++|+
T Consensus 1 ~Ki~ivG~~~vG-KSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iil 79 (215)
T cd04109 1 FKIVVLGDGAVG-KTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFL 79 (215)
T ss_pred CEEEEECcCCCC-HHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEE
Confidence 489999999999 9999999999999999999998665 55677754 57999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhcC----CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEec
Q 028595 83 AFSLVSRASYENVLKKWIPELQHYS----PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECS 158 (207)
Q Consensus 83 v~d~~~~~s~~~~~~~~~~~i~~~~----~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~S 158 (207)
|||++++++++.+ ..|+..+.+.. .++|+++|+||+|+.+.+. +..++++.+++.+++ +++++|
T Consensus 80 V~D~t~~~s~~~~-~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~----------v~~~~~~~~~~~~~~-~~~~iS 147 (215)
T cd04109 80 VYDVTNSQSFENL-EDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRT----------VKDDKHARFAQANGM-ESCLVS 147 (215)
T ss_pred EEECCCHHHHHHH-HHHHHHHHHhccccCCCceEEEEEECcccccccc----------cCHHHHHHHHHHcCC-EEEEEE
Confidence 9999999999999 78988887654 2578999999999976555 388899999999997 899999
Q ss_pred cCCCCCHHHHHHHHHHHHhC
Q 028595 159 SKTQQNVKAVFDAAIKVVIK 178 (207)
Q Consensus 159 a~~~~~i~~~f~~i~~~~~~ 178 (207)
|++|+|++++|+++++.+..
T Consensus 148 Aktg~gv~~lf~~l~~~l~~ 167 (215)
T cd04109 148 AKTGDRVNLLFQQLAAELLG 167 (215)
T ss_pred CCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999998864
No 37
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=100.00 E-value=5.6e-35 Score=212.49 Aligned_cols=164 Identities=29% Similarity=0.472 Sum_probs=148.0
Q ss_pred ccceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEE
Q 028595 2 ELLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF 80 (207)
Q Consensus 2 ~~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ 80 (207)
+..+||+++|.+++| ||||++++.++.+...+.||.+.++ ...+..++..+.+.+||++|++.+..++..+++++|++
T Consensus 1 ~~~~ki~vvG~~~~G-KSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~ 79 (167)
T cd01867 1 DYLFKLLLIGDSGVG-KSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTAYYRGAMGI 79 (167)
T ss_pred CcceEEEEECCCCCC-HHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhCCCCEE
Confidence 357899999999999 9999999999999999999998777 44677888889999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEecc
Q 028595 81 VLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSS 159 (207)
Q Consensus 81 i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa 159 (207)
++|||+++++++..+ ..|+..+.... +++|+++||||+|+.+.+.+ ..+++..+++.++. +++++||
T Consensus 80 i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~~~~----------~~~~~~~~~~~~~~-~~~~~Sa 147 (167)
T cd01867 80 ILVYDITDEKSFENI-RNWMRNIEEHASEDVERMLVGNKCDMEEKRVV----------SKEEGEALADEYGI-KFLETSA 147 (167)
T ss_pred EEEEECcCHHHHHhH-HHHHHHHHHhCCCCCcEEEEEECcccccccCC----------CHHHHHHHHHHcCC-EEEEEeC
Confidence 999999999999999 78999887765 57999999999999876553 77889999999998 9999999
Q ss_pred CCCCCHHHHHHHHHHHHhC
Q 028595 160 KTQQNVKAVFDAAIKVVIK 178 (207)
Q Consensus 160 ~~~~~i~~~f~~i~~~~~~ 178 (207)
+++.|++++|+++++.+..
T Consensus 148 ~~~~~v~~~~~~i~~~~~~ 166 (167)
T cd01867 148 KANINVEEAFFTLAKDIKK 166 (167)
T ss_pred CCCCCHHHHHHHHHHHHHh
Confidence 9999999999999998764
No 38
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=7.5e-35 Score=215.77 Aligned_cols=162 Identities=27% Similarity=0.390 Sum_probs=146.4
Q ss_pred eeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEE
Q 028595 5 AKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA 83 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v 83 (207)
+||+++|.++|| ||||+++|.++.+...+.||.+.++ ...+.+++..+.+.+||++|++.+..++..+++++|++|+|
T Consensus 1 ~ki~v~G~~~vG-KSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv 79 (188)
T cd04125 1 FKVVIIGDYGVG-KSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLV 79 (188)
T ss_pred CEEEEECCCCCC-HHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEE
Confidence 589999999999 9999999999999888999998777 45678888899999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCCC
Q 028595 84 FSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQ 162 (207)
Q Consensus 84 ~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~ 162 (207)
||+++++++..+ ..|+..+.... +.+|++++|||+|+.+...+ ..++++.+++..++ +++++||+++
T Consensus 80 ~d~~~~~s~~~i-~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~~v----------~~~~~~~~~~~~~~-~~~evSa~~~ 147 (188)
T cd04125 80 YDVTDQESFENL-KFWINEINRYARENVIKVIVANKSDLVNNKVV----------DSNIAKSFCDSLNI-PFFETSAKQS 147 (188)
T ss_pred EECcCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECCCCcccccC----------CHHHHHHHHHHcCC-eEEEEeCCCC
Confidence 999999999999 77999887765 46899999999999766553 77888999998888 9999999999
Q ss_pred CCHHHHHHHHHHHHhCC
Q 028595 163 QNVKAVFDAAIKVVIKP 179 (207)
Q Consensus 163 ~~i~~~f~~i~~~~~~~ 179 (207)
.|++++|+++++.+..+
T Consensus 148 ~~i~~~f~~l~~~~~~~ 164 (188)
T cd04125 148 INVEEAFILLVKLIIKR 164 (188)
T ss_pred CCHHHHHHHHHHHHHHH
Confidence 99999999999998754
No 39
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=100.00 E-value=1.2e-34 Score=215.21 Aligned_cols=168 Identities=35% Similarity=0.526 Sum_probs=135.7
Q ss_pred ceeEEEEecccccceeeeee-eccCC-----CCCccccCcee--eeeeeE--------EEECCeEEEEEEEeCCCCcccc
Q 028595 4 LAKLACLFATQVTSFLLYVL-SVSGR-----SSIWDYIPTVF--DNFSAN--------VVAEGTTVNLGLWDTAGQEDYN 67 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~-~l~~~-----~~~~~~~~t~~--~~~~~~--------~~~~~~~~~l~i~D~~G~~~~~ 67 (207)
.+||+++|+.+|| ||||+. ++.++ .+...|.||++ +.+... ..++|..+.+.||||+|++.
T Consensus 2 ~~Kiv~vG~~~vG-KTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~-- 78 (195)
T cd01873 2 TIKCVVVGDNAVG-KTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD-- 78 (195)
T ss_pred ceEEEEECCCCcC-HHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh--
Confidence 3699999999999 999995 55544 34567889986 334332 25789999999999999976
Q ss_pred ccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCccc---------ccCCCCCcccC
Q 028595 68 RLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHY---------LADHPGLVPVT 138 (207)
Q Consensus 68 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~---------~~~~~~~~~v~ 138 (207)
.+...+++++|++|+|||+++++|++.+...|+..+....++.|+++||||+|+.+.... .......+.+.
T Consensus 79 ~~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~~~~~~~~V~ 158 (195)
T cd01873 79 KDRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRYADLDEVNRARRPLARPIKNADILP 158 (195)
T ss_pred hhhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhcccccccccccCCccC
Confidence 356778999999999999999999999944699998877778999999999998642110 00011235579
Q ss_pred HHHHHHHHHHhCCcEEEEeccCCCCCHHHHHHHHHHH
Q 028595 139 TAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKV 175 (207)
Q Consensus 139 ~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i~~~ 175 (207)
.++++++++++++ +|+||||++|.||+++|+.+++.
T Consensus 159 ~~e~~~~a~~~~~-~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 159 PETGRAVAKELGI-PYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred HHHHHHHHHHhCC-EEEEcCCCCCCCHHHHHHHHHHh
Confidence 9999999999998 99999999999999999999864
No 40
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=100.00 E-value=9.1e-35 Score=219.10 Aligned_cols=167 Identities=25% Similarity=0.306 Sum_probs=135.2
Q ss_pred eeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEEE
Q 028595 5 AKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 84 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 84 (207)
.||+++|.+++| ||||+++|..+.+.. +.||++..+.... ...+.+.||||+|++.+..++..+++++|++|+||
T Consensus 1 ~KIvivG~~~vG-KTSLi~r~~~~~f~~-~~~Tig~~~~~~~---~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~ 75 (220)
T cd04126 1 LKVVLLGDMNVG-KTSLLHRYMERRFKD-TVSTVGGAFYLKQ---WGPYNISIWDTAGREQFHGLGSMYCRGAAAVILTY 75 (220)
T ss_pred CEEEEECCCCCc-HHHHHHHHhcCCCCC-CCCccceEEEEEE---eeEEEEEEEeCCCcccchhhHHHHhccCCEEEEEE
Confidence 489999999999 999999999999864 6788876553221 14688999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhc-CCCCcEEEEeeCCCcccCccc---------ccCCCCCcccCHHHHHHHHHHhCC---
Q 028595 85 SLVSRASYENVLKKWIPELQHY-SPGVPVVLVGTKLDLREDKHY---------LADHPGLVPVTTAQGEELRKQIGA--- 151 (207)
Q Consensus 85 d~~~~~s~~~~~~~~~~~i~~~-~~~~piivv~nK~D~~~~~~~---------~~~~~~~~~v~~~~~~~~~~~~~~--- 151 (207)
|++++++++++ ..|+..+.+. .+++|++|||||+|+.+.... .......+.+..++++.++++.+.
T Consensus 76 Dvt~~~Sf~~l-~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~~~~~~~ 154 (220)
T cd04126 76 DVSNVQSLEEL-EDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKM 154 (220)
T ss_pred ECCCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHHhCcccc
Confidence 99999999999 4554444433 367999999999999752110 001112455789999999999871
Q ss_pred ----------cEEEEeccCCCCCHHHHHHHHHHHHh
Q 028595 152 ----------SYYIECSSKTQQNVKAVFDAAIKVVI 177 (207)
Q Consensus 152 ----------~~~~e~Sa~~~~~i~~~f~~i~~~~~ 177 (207)
.+|+||||++|.||+++|..+++.+.
T Consensus 155 ~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~ 190 (220)
T cd04126 155 LDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVL 190 (220)
T ss_pred ccccccccccceEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 37999999999999999999998886
No 41
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=100.00 E-value=9.4e-35 Score=210.15 Aligned_cols=158 Identities=27% Similarity=0.467 Sum_probs=144.0
Q ss_pred eeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEE
Q 028595 5 AKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA 83 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v 83 (207)
+||+++|.+++| ||||+++|.++.+.+.+.||.+..+ ...+.+++..+.+.+||++|++++..++..+++++|++++|
T Consensus 1 ~ki~vvG~~~~G-KTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v 79 (161)
T cd04117 1 FRLLLIGDSGVG-KTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLV 79 (161)
T ss_pred CEEEEECcCCCC-HHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEE
Confidence 489999999999 9999999999999988999998776 45778888899999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCCC
Q 028595 84 FSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQ 162 (207)
Q Consensus 84 ~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~ 162 (207)
||+++++|++++ ..|+..+.... .+.|+++||||.|+.+.+.+ ..+++..+++.+++ +|+++||++|
T Consensus 80 ~d~~~~~sf~~~-~~~~~~~~~~~~~~~~iilvgnK~Dl~~~~~v----------~~~~~~~~~~~~~~-~~~e~Sa~~~ 147 (161)
T cd04117 80 YDISSERSYQHI-MKWVSDVDEYAPEGVQKILIGNKADEEQKRQV----------GDEQGNKLAKEYGM-DFFETSACTN 147 (161)
T ss_pred EECCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECcccccccCC----------CHHHHHHHHHHcCC-EEEEEeCCCC
Confidence 999999999999 78998887665 47999999999999776654 78899999999997 9999999999
Q ss_pred CCHHHHHHHHHHH
Q 028595 163 QNVKAVFDAAIKV 175 (207)
Q Consensus 163 ~~i~~~f~~i~~~ 175 (207)
.|++++|++|++.
T Consensus 148 ~~v~~~f~~l~~~ 160 (161)
T cd04117 148 SNIKESFTRLTEL 160 (161)
T ss_pred CCHHHHHHHHHhh
Confidence 9999999999864
No 42
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=100.00 E-value=1e-34 Score=213.82 Aligned_cols=167 Identities=25% Similarity=0.411 Sum_probs=142.8
Q ss_pred eeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEE
Q 028595 5 AKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA 83 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v 83 (207)
+||+++|..+|| ||||+++|..+.+...|.||++..+ ...+.+++..+.+.+|||+|++.+..++..+++++|++++|
T Consensus 1 ~Ki~vlG~~~vG-KTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv 79 (182)
T cd04128 1 LKIGLLGDAQIG-KTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCNDAVAILFM 79 (182)
T ss_pred CEEEEECCCCCC-HHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEE
Confidence 489999999999 9999999999999989999999777 45788899999999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcCC-CCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCCC
Q 028595 84 FSLVSRASYENVLKKWIPELQHYSP-GVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQ 162 (207)
Q Consensus 84 ~d~~~~~s~~~~~~~~~~~i~~~~~-~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~ 162 (207)
||++++++++++ ..|+..+.+..+ ..| ++||||+|+...... .... ...++++.+++.++. +++++||++|
T Consensus 80 ~D~t~~~s~~~i-~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~----~~~~-~~~~~~~~~a~~~~~-~~~e~SAk~g 151 (182)
T cd04128 80 FDLTRKSTLNSI-KEWYRQARGFNKTAIP-ILVGTKYDLFADLPP----EEQE-EITKQARKYAKAMKA-PLIFCSTSHS 151 (182)
T ss_pred EECcCHHHHHHH-HHHHHHHHHhCCCCCE-EEEEEchhccccccc----hhhh-hhHHHHHHHHHHcCC-EEEEEeCCCC
Confidence 999999999999 889988877553 456 688999999532100 0000 134678889999997 9999999999
Q ss_pred CCHHHHHHHHHHHHhCCC
Q 028595 163 QNVKAVFDAAIKVVIKPP 180 (207)
Q Consensus 163 ~~i~~~f~~i~~~~~~~~ 180 (207)
.|++++|+++++.+...+
T Consensus 152 ~~v~~lf~~l~~~l~~~~ 169 (182)
T cd04128 152 INVQKIFKIVLAKAFDLP 169 (182)
T ss_pred CCHHHHHHHHHHHHHhcC
Confidence 999999999999887643
No 43
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.7e-35 Score=201.73 Aligned_cols=162 Identities=26% Similarity=0.430 Sum_probs=150.8
Q ss_pred cceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEE
Q 028595 3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 81 (207)
Q Consensus 3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i 81 (207)
..+||+++|+.+|| ||+|+++|+.+-|++....|+|..| .+.+.++|..++++||||+|||+|+++...|++.++++|
T Consensus 6 flfkivlvgnagvg-ktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsahali 84 (213)
T KOG0095|consen 6 FLFKIVLVGNAGVG-KTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAHALI 84 (213)
T ss_pred eeEEEEEEccCCcC-cchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcceEE
Confidence 47999999999999 9999999999999999999999998 568999999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccC
Q 028595 82 LAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK 160 (207)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 160 (207)
+|||++-..||+-+ ..|+.+|+++. ..+--++||||+|+.+.+++ ....+++|++.... .|.|+||+
T Consensus 85 lvydiscqpsfdcl-pewlreie~yan~kvlkilvgnk~d~~drrev----------p~qigeefs~~qdm-yfletsak 152 (213)
T KOG0095|consen 85 LVYDISCQPSFDCL-PEWLREIEQYANNKVLKILVGNKIDLADRREV----------PQQIGEEFSEAQDM-YFLETSAK 152 (213)
T ss_pred EEEecccCcchhhh-HHHHHHHHHHhhcceEEEeeccccchhhhhhh----------hHHHHHHHHHhhhh-hhhhhccc
Confidence 99999999999999 99999999988 46667999999999988875 88889999998776 88899999
Q ss_pred CCCCHHHHHHHHHHHHh
Q 028595 161 TQQNVKAVFDAAIKVVI 177 (207)
Q Consensus 161 ~~~~i~~~f~~i~~~~~ 177 (207)
+-+|++++|..++-.+.
T Consensus 153 ea~nve~lf~~~a~rli 169 (213)
T KOG0095|consen 153 EADNVEKLFLDLACRLI 169 (213)
T ss_pred chhhHHHHHHHHHHHHH
Confidence 99999999999887765
No 44
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=100.00 E-value=1.6e-34 Score=209.70 Aligned_cols=160 Identities=29% Similarity=0.539 Sum_probs=144.4
Q ss_pred eeEEEEecccccceeeeeeeccCCCCCccccCceeeeee-eEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEE
Q 028595 5 AKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA 83 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v 83 (207)
+||+++|.+++| ||||+++|.++++...+.||.+.++. ..+..++..+.+.+|||+|++++..++..+++++|++++|
T Consensus 2 ~ki~i~G~~~~G-KSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v 80 (165)
T cd01865 2 FKLLIIGNSSVG-KTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILM 80 (165)
T ss_pred eEEEEECCCCCC-HHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHccCCcEEEEE
Confidence 799999999999 99999999999998889999987663 4667788889999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCCC
Q 028595 84 FSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQ 162 (207)
Q Consensus 84 ~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~ 162 (207)
||++++++++.+ ..|+..+.... +++|+++|+||+|+.+.+.. ..+++.++++.+++ +++++||++|
T Consensus 81 ~d~~~~~s~~~~-~~~~~~i~~~~~~~~piivv~nK~Dl~~~~~~----------~~~~~~~~~~~~~~-~~~~~Sa~~~ 148 (165)
T cd01865 81 YDITNEESFNAV-QDWSTQIKTYSWDNAQVILVGNKCDMEDERVV----------SSERGRQLADQLGF-EFFEASAKEN 148 (165)
T ss_pred EECCCHHHHHHH-HHHHHHHHHhCCCCCCEEEEEECcccCccccc----------CHHHHHHHHHHcCC-EEEEEECCCC
Confidence 999999999999 78999887765 57999999999999766543 67888899999998 8999999999
Q ss_pred CCHHHHHHHHHHHHh
Q 028595 163 QNVKAVFDAAIKVVI 177 (207)
Q Consensus 163 ~~i~~~f~~i~~~~~ 177 (207)
.|++++|+++++.+.
T Consensus 149 ~gv~~l~~~l~~~~~ 163 (165)
T cd01865 149 INVKQVFERLVDIIC 163 (165)
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999998764
No 45
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=100.00 E-value=1e-34 Score=213.44 Aligned_cols=163 Identities=31% Similarity=0.482 Sum_probs=144.8
Q ss_pred cceeEEEEecccccceeeeeeeccCCCCCccccCceeeeee-eEEEEC----------CeEEEEEEEeCCCCcccccccc
Q 028595 3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFS-ANVVAE----------GTTVNLGLWDTAGQEDYNRLRP 71 (207)
Q Consensus 3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~----------~~~~~l~i~D~~G~~~~~~~~~ 71 (207)
...||+++|.++|| ||||++++.++.+...+.||++.++. ..+... +..+.+.||||+|++.+..++.
T Consensus 3 ~~~ki~ivG~~~vG-KTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~ 81 (180)
T cd04127 3 YLIKFLALGDSGVG-KTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTT 81 (180)
T ss_pred ceEEEEEECCCCCC-HHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHH
Confidence 46899999999999 99999999999999999999987774 344443 4578999999999999999999
Q ss_pred ceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC--CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHh
Q 028595 72 LSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI 149 (207)
Q Consensus 72 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 149 (207)
.+++++|++++|||+++++|+.++ ..|+..+.... +++|+++||||+|+.+.+.+ ..++++++++.+
T Consensus 82 ~~~~~~~~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~~~v----------~~~~~~~~~~~~ 150 (180)
T cd04127 82 AFFRDAMGFLLIFDLTNEQSFLNV-RNWMSQLQTHAYCENPDIVLCGNKADLEDQRQV----------SEEQAKALADKY 150 (180)
T ss_pred HHhCCCCEEEEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCcEEEEEeCccchhcCcc----------CHHHHHHHHHHc
Confidence 999999999999999999999999 78998887653 57999999999999776553 778899999999
Q ss_pred CCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 028595 150 GASYYIECSSKTQQNVKAVFDAAIKVVIK 178 (207)
Q Consensus 150 ~~~~~~e~Sa~~~~~i~~~f~~i~~~~~~ 178 (207)
++ +++++||++|.|++++|+++++.+++
T Consensus 151 ~~-~~~e~Sak~~~~v~~l~~~l~~~~~~ 178 (180)
T cd04127 151 GI-PYFETSAATGTNVEKAVERLLDLVMK 178 (180)
T ss_pred CC-eEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence 98 99999999999999999999988764
No 46
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=2e-34 Score=213.99 Aligned_cols=162 Identities=29% Similarity=0.512 Sum_probs=144.6
Q ss_pred eeEEEEecccccceeeeeeeccCCCCC-ccccCceeeeeee-EEEECCeEEEEEEEeCCCCccccccccceecCCcEEEE
Q 028595 5 AKLACLFATQVTSFLLYVLSVSGRSSI-WDYIPTVFDNFSA-NVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 82 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~~~~~-~~~~~t~~~~~~~-~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~ 82 (207)
+||+++|.+++| ||||+++|.++.+. ..+.+|.+..+.. .+.+++..+.+.||||||++++..++..+++++|++|+
T Consensus 1 ~Ki~vvG~~~vG-KTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~ 79 (191)
T cd04112 1 FKVMLLGDSGVG-KTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLL 79 (191)
T ss_pred CEEEEECCCCCC-HHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEE
Confidence 489999999999 99999999999875 4678888877643 67788999999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCC
Q 028595 83 AFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT 161 (207)
Q Consensus 83 v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 161 (207)
|||++++++++++ ..|+..+.... .++|+++|+||+|+...+.+ ..++++.+++.++. +|+++||++
T Consensus 80 v~D~~~~~s~~~~-~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~~----------~~~~~~~l~~~~~~-~~~e~Sa~~ 147 (191)
T cd04112 80 LYDITNKASFDNI-RAWLTEIKEYAQEDVVIMLLGNKADMSGERVV----------KREDGERLAKEYGV-PFMETSAKT 147 (191)
T ss_pred EEECCCHHHHHHH-HHHHHHHHHhCCCCCcEEEEEEcccchhcccc----------CHHHHHHHHHHcCC-eEEEEeCCC
Confidence 9999999999999 78988887766 47999999999999765543 77889999999997 999999999
Q ss_pred CCCHHHHHHHHHHHHhCC
Q 028595 162 QQNVKAVFDAAIKVVIKP 179 (207)
Q Consensus 162 ~~~i~~~f~~i~~~~~~~ 179 (207)
|.|++++|+++++.+...
T Consensus 148 ~~~v~~l~~~l~~~~~~~ 165 (191)
T cd04112 148 GLNVELAFTAVAKELKHR 165 (191)
T ss_pred CCCHHHHHHHHHHHHHHh
Confidence 999999999999999865
No 47
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=100.00 E-value=2.5e-34 Score=217.46 Aligned_cols=162 Identities=23% Similarity=0.322 Sum_probs=143.6
Q ss_pred cceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEE
Q 028595 3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 81 (207)
Q Consensus 3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i 81 (207)
..+||+++|.++|| ||||+++++.+.+...+.||++..+ ...+..++..+.+.+|||+|++.+..++..+++++|++|
T Consensus 12 ~~~Ki~vvG~~gvG-KTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i 90 (219)
T PLN03071 12 PSFKLVIVGDGGTG-KTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAI 90 (219)
T ss_pred CceEEEEECcCCCC-HHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHcccccEEE
Confidence 35799999999999 9999999999999889999998766 446777788899999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCC
Q 028595 82 LAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT 161 (207)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 161 (207)
+|||++++++++.+ ..|+..+.+..++.|+++||||+|+.... +..+++ .+++..++ +|+++||++
T Consensus 91 lvfD~~~~~s~~~i-~~w~~~i~~~~~~~piilvgNK~Dl~~~~-----------v~~~~~-~~~~~~~~-~~~e~SAk~ 156 (219)
T PLN03071 91 IMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKNRQ-----------VKAKQV-TFHRKKNL-QYYEISAKS 156 (219)
T ss_pred EEEeCCCHHHHHHH-HHHHHHHHHhCCCCcEEEEEEchhhhhcc-----------CCHHHH-HHHHhcCC-EEEEcCCCC
Confidence 99999999999999 88999998777889999999999986432 244455 67777777 899999999
Q ss_pred CCCHHHHHHHHHHHHhCC
Q 028595 162 QQNVKAVFDAAIKVVIKP 179 (207)
Q Consensus 162 ~~~i~~~f~~i~~~~~~~ 179 (207)
|.|++++|+++++.+.+.
T Consensus 157 ~~~i~~~f~~l~~~~~~~ 174 (219)
T PLN03071 157 NYNFEKPFLYLARKLAGD 174 (219)
T ss_pred CCCHHHHHHHHHHHHHcC
Confidence 999999999999998754
No 48
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=100.00 E-value=3.8e-34 Score=207.82 Aligned_cols=161 Identities=28% Similarity=0.510 Sum_probs=146.0
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEE
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 82 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~ 82 (207)
.+||+++|.+++| ||||++++.++.+...+.+|.+.++ ...+.+++..+.+++||+||++++..++..+++++|++++
T Consensus 2 ~~ki~i~G~~~vG-KSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~ 80 (166)
T cd01869 2 LFKLLLIGDSGVG-KSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIII 80 (166)
T ss_pred eEEEEEECCCCCC-HHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEE
Confidence 4799999999999 9999999999998888889988776 4567788889999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCC
Q 028595 83 AFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT 161 (207)
Q Consensus 83 v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 161 (207)
|||+++++++..+ ..|+..+.... ++.|+++++||+|+.+...+ ..+++..+++.++. +++++||++
T Consensus 81 v~d~~~~~s~~~l-~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~~~----------~~~~~~~~~~~~~~-~~~~~Sa~~ 148 (166)
T cd01869 81 VYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLTDKRVV----------DYSEAQEFADELGI-PFLETSAKN 148 (166)
T ss_pred EEECcCHHHHHhH-HHHHHHHHHhCCCCCcEEEEEEChhcccccCC----------CHHHHHHHHHHcCC-eEEEEECCC
Confidence 9999999999999 78998887766 67999999999998766543 78889999999998 999999999
Q ss_pred CCCHHHHHHHHHHHHh
Q 028595 162 QQNVKAVFDAAIKVVI 177 (207)
Q Consensus 162 ~~~i~~~f~~i~~~~~ 177 (207)
|.|++++|.++++.+.
T Consensus 149 ~~~v~~~~~~i~~~~~ 164 (166)
T cd01869 149 ATNVEQAFMTMAREIK 164 (166)
T ss_pred CcCHHHHHHHHHHHHH
Confidence 9999999999998875
No 49
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=1.4e-35 Score=203.91 Aligned_cols=164 Identities=28% Similarity=0.496 Sum_probs=152.7
Q ss_pred cceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEE
Q 028595 3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 81 (207)
Q Consensus 3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i 81 (207)
..+|++++|..-|| ||+|+-+|+.++|......|....| .+.+.+.+....+.||||+|||+|..+.+.||+++++++
T Consensus 12 ~~FK~VLLGEGCVG-KtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIYYRgSnGal 90 (218)
T KOG0088|consen 12 FKFKIVLLGEGCVG-KTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIYYRGSNGAL 90 (218)
T ss_pred eeeEEEEEcCCccc-hhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceEEeCCCceE
Confidence 46899999999999 9999999999999998888887777 668999999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccC
Q 028595 82 LAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK 160 (207)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 160 (207)
+|||++|++||+.+ +.|..++.... ..+-++|||||+|+.+.+.+ +..+++.+++..|. .|+++||+
T Consensus 91 LVyDITDrdSFqKV-KnWV~Elr~mlGnei~l~IVGNKiDLEeeR~V----------t~qeAe~YAesvGA-~y~eTSAk 158 (218)
T KOG0088|consen 91 LVYDITDRDSFQKV-KNWVLELRTMLGNEIELLIVGNKIDLEEERQV----------TRQEAEAYAESVGA-LYMETSAK 158 (218)
T ss_pred EEEeccchHHHHHH-HHHHHHHHHHhCCeeEEEEecCcccHHHhhhh----------hHHHHHHHHHhhch-hheecccc
Confidence 99999999999999 89999998766 57889999999999999885 99999999999998 99999999
Q ss_pred CCCCHHHHHHHHHHHHhCC
Q 028595 161 TQQNVKAVFDAAIKVVIKP 179 (207)
Q Consensus 161 ~~~~i~~~f~~i~~~~~~~ 179 (207)
++.||.++|..+....+++
T Consensus 159 ~N~Gi~elFe~Lt~~MiE~ 177 (218)
T KOG0088|consen 159 DNVGISELFESLTAKMIEH 177 (218)
T ss_pred cccCHHHHHHHHHHHHHHH
Confidence 9999999999998887754
No 50
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=100.00 E-value=8.5e-34 Score=207.44 Aligned_cols=172 Identities=45% Similarity=0.765 Sum_probs=148.9
Q ss_pred eeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEEE
Q 028595 5 AKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 84 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 84 (207)
+||+++|.+++| ||||+++|..+.+...+.||.++.+...+.+++..+.+.+|||+|++.+..++..+++++|++++||
T Consensus 1 ~ki~i~G~~~~G-KTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 79 (174)
T cd04135 1 LKCVVVGDGAVG-KTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICF 79 (174)
T ss_pred CEEEEECCCCCC-HHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccccccCCCCCEEEEEE
Confidence 489999999999 9999999999999888999998887778888999999999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccc--cCCCCCcccCHHHHHHHHHHhCCcEEEEeccCCC
Q 028595 85 SLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYL--ADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQ 162 (207)
Q Consensus 85 d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~ 162 (207)
|++++++++.+...|...+....++.|++++|||+|+.+..... ......+.+..++++.+++.++..+|+++||++|
T Consensus 80 ~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~ 159 (174)
T cd04135 80 SVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHCYVECSALTQ 159 (174)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCCEEEEecCCcC
Confidence 99999999998667888887666789999999999986543210 0111123467889999999999778999999999
Q ss_pred CCHHHHHHHHHHHHh
Q 028595 163 QNVKAVFDAAIKVVI 177 (207)
Q Consensus 163 ~~i~~~f~~i~~~~~ 177 (207)
.|++++|+.+++.++
T Consensus 160 ~gi~~~f~~~~~~~~ 174 (174)
T cd04135 160 KGLKTVFDEAILAIL 174 (174)
T ss_pred CCHHHHHHHHHHHhC
Confidence 999999999998763
No 51
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=100.00 E-value=4.5e-34 Score=206.79 Aligned_cols=160 Identities=24% Similarity=0.442 Sum_probs=143.1
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEE
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA 83 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v 83 (207)
.+||+++|.+++| ||||++++..+.+...+.||.+..+...+.+++..+.+.||||+|++++..++..+++++|++++|
T Consensus 1 ~~ki~i~G~~~vG-KTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v 79 (163)
T cd04176 1 EYKVVVLGSGGVG-KSALTVQFVSGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVV 79 (163)
T ss_pred CeEEEEECCCCCC-HHHHHHHHHcCCCCCCCCCchhheEEEEEEECCEEEEEEEEECCCcccccchHHHHHhhCCEEEEE
Confidence 3699999999999 999999999999988889998877777888899899999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcC--CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCC
Q 028595 84 FSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT 161 (207)
Q Consensus 84 ~d~~~~~s~~~~~~~~~~~i~~~~--~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 161 (207)
||+++++++.++ ..|...+.... .++|+++|+||+|+.+.+. +..+++..+++.++. +++++||++
T Consensus 80 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~ 147 (163)
T cd04176 80 YSLVNQQTFQDI-KPMRDQIVRVKGYEKVPIILVGNKVDLESERE----------VSSAEGRALAEEWGC-PFMETSAKS 147 (163)
T ss_pred EECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccchhcCc----------cCHHHHHHHHHHhCC-EEEEecCCC
Confidence 999999999999 77877776543 5899999999999976544 366778899888887 999999999
Q ss_pred CCCHHHHHHHHHHHH
Q 028595 162 QQNVKAVFDAAIKVV 176 (207)
Q Consensus 162 ~~~i~~~f~~i~~~~ 176 (207)
+.|++++|.++++.+
T Consensus 148 ~~~v~~l~~~l~~~l 162 (163)
T cd04176 148 KTMVNELFAEIVRQM 162 (163)
T ss_pred CCCHHHHHHHHHHhc
Confidence 999999999998754
No 52
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=100.00 E-value=7e-34 Score=206.55 Aligned_cols=161 Identities=24% Similarity=0.385 Sum_probs=140.6
Q ss_pred eeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEE
Q 028595 5 AKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA 83 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v 83 (207)
+||+++|.++|| ||||+++++.+.+...+.||.+.++ ...+..++..+.+.+|||+|++.+..++..++..+|++|+|
T Consensus 1 ~ki~vvG~~~vG-KTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v 79 (166)
T cd00877 1 FKLVLVGDGGTG-KTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIM 79 (166)
T ss_pred CEEEEECCCCCC-HHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCChhhccccHHHhcCCCEEEEE
Confidence 589999999999 9999999999988888999998766 44566678889999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCCCC
Q 028595 84 FSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ 163 (207)
Q Consensus 84 ~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~ 163 (207)
||+++++++..+ ..|+..+....+++|+++||||+|+.+.. ...+..++++..++ +++++||++|.
T Consensus 80 ~d~~~~~s~~~~-~~~~~~i~~~~~~~piiiv~nK~Dl~~~~------------~~~~~~~~~~~~~~-~~~e~Sa~~~~ 145 (166)
T cd00877 80 FDVTSRVTYKNV-PNWHRDLVRVCGNIPIVLCGNKVDIKDRK------------VKAKQITFHRKKNL-QYYEISAKSNY 145 (166)
T ss_pred EECCCHHHHHHH-HHHHHHHHHhCCCCcEEEEEEchhccccc------------CCHHHHHHHHHcCC-EEEEEeCCCCC
Confidence 999999999999 78999998877789999999999997332 22344567776666 89999999999
Q ss_pred CHHHHHHHHHHHHhCCC
Q 028595 164 NVKAVFDAAIKVVIKPP 180 (207)
Q Consensus 164 ~i~~~f~~i~~~~~~~~ 180 (207)
|++++|+++++.+.+.+
T Consensus 146 ~v~~~f~~l~~~~~~~~ 162 (166)
T cd00877 146 NFEKPFLWLARKLLGNP 162 (166)
T ss_pred ChHHHHHHHHHHHHhcc
Confidence 99999999999987643
No 53
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=100.00 E-value=4.5e-34 Score=207.28 Aligned_cols=161 Identities=20% Similarity=0.386 Sum_probs=144.8
Q ss_pred eeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEE
Q 028595 5 AKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA 83 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v 83 (207)
+||+++|.+++| ||||+++|+++++...+.||++..+ ...+.+++..+.+++|||+|++.+..++..+++++|++|+|
T Consensus 1 ~ki~~vG~~~vG-KTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv 79 (168)
T cd04119 1 IKVISMGNSGVG-KSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLV 79 (168)
T ss_pred CEEEEECCCCCC-HHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCccHHHHHHHHHHhccCCEEEEE
Confidence 489999999999 9999999999999999999998777 55788889999999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcC------CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEe
Q 028595 84 FSLVSRASYENVLKKWIPELQHYS------PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIEC 157 (207)
Q Consensus 84 ~d~~~~~s~~~~~~~~~~~i~~~~------~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~ 157 (207)
||++++++++.+ ..|+..+.... .+.|+++|+||+|+.+... +..++++.+++..+. +++++
T Consensus 80 ~D~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~ 147 (168)
T cd04119 80 YDVTDRQSFEAL-DSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRA----------VSEDEGRLWAESKGF-KYFET 147 (168)
T ss_pred EECCCHHHHHhH-HHHHHHHHHhccccccCCCceEEEEEEchhcccccc----------cCHHHHHHHHHHcCC-eEEEE
Confidence 999999999998 78988887654 3689999999999975444 378888899999887 89999
Q ss_pred ccCCCCCHHHHHHHHHHHHhC
Q 028595 158 SSKTQQNVKAVFDAAIKVVIK 178 (207)
Q Consensus 158 Sa~~~~~i~~~f~~i~~~~~~ 178 (207)
||++|.|++++|+++++.+++
T Consensus 148 Sa~~~~gi~~l~~~l~~~l~~ 168 (168)
T cd04119 148 SACTGEGVNEMFQTLFSSIVD 168 (168)
T ss_pred ECCCCCCHHHHHHHHHHHHhC
Confidence 999999999999999988763
No 54
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=100.00 E-value=6.8e-34 Score=205.17 Aligned_cols=159 Identities=33% Similarity=0.499 Sum_probs=142.5
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEE
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA 83 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v 83 (207)
.+||+++|.+++| ||||+++|+++.+...+.||.++.+...+.+++..+.+.+|||+|++++..++..+++++|++++|
T Consensus 1 ~~ki~iiG~~~vG-KTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v 79 (162)
T cd04138 1 EYKLVVVGAGGVG-KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 79 (162)
T ss_pred CeEEEEECCCCCC-HHHHHHHHHhCCCcCCcCCcchheEEEEEEECCEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEE
Confidence 3699999999999 999999999999988999999888877888899889999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcC--CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCC
Q 028595 84 FSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT 161 (207)
Q Consensus 84 ~d~~~~~s~~~~~~~~~~~i~~~~--~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 161 (207)
||++++.+++.+ ..|...+.+.. ++.|+++|+||+|+.+.. +..+++.++++.++. +++++||++
T Consensus 80 ~~~~~~~s~~~~-~~~~~~i~~~~~~~~~piivv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~-~~~~~Sa~~ 146 (162)
T cd04138 80 FAINSRKSFEDI-HTYREQIKRVKDSDDVPMVLVGNKCDLAART-----------VSSRQGQDLAKSYGI-PYIETSAKT 146 (162)
T ss_pred EECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECcccccce-----------ecHHHHHHHHHHhCC-eEEEecCCC
Confidence 999999999998 67777776543 579999999999987632 367788899988888 999999999
Q ss_pred CCCHHHHHHHHHHHH
Q 028595 162 QQNVKAVFDAAIKVV 176 (207)
Q Consensus 162 ~~~i~~~f~~i~~~~ 176 (207)
|.|++++|+++++.+
T Consensus 147 ~~gi~~l~~~l~~~~ 161 (162)
T cd04138 147 RQGVEEAFYTLVREI 161 (162)
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999998754
No 55
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.1e-35 Score=201.33 Aligned_cols=165 Identities=31% Similarity=0.456 Sum_probs=149.1
Q ss_pred cceeEEEEecccccceeeeeeeccCCCCCccccCceeeeee-eEEEEC---------CeEEEEEEEeCCCCccccccccc
Q 028595 3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFS-ANVVAE---------GTTVNLGLWDTAGQEDYNRLRPL 72 (207)
Q Consensus 3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~---------~~~~~l~i~D~~G~~~~~~~~~~ 72 (207)
..+|.+.+|+++|| ||+++++++.++|....+.|+|.+|. +.+..+ +..+.+++|||+|||+|+++...
T Consensus 8 ylikfLaLGDSGVG-KTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTA 86 (219)
T KOG0081|consen 8 YLIKFLALGDSGVG-KTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTA 86 (219)
T ss_pred HHHHHHhhccCCCC-ceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHH
Confidence 35788999999999 99999999999999999999999984 455442 35799999999999999999999
Q ss_pred eecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhc--CCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhC
Q 028595 73 SYRGADVFVLAFSLVSRASYENVLKKWIPELQHY--SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG 150 (207)
Q Consensus 73 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~--~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 150 (207)
++++|-+++++||+++..||.++ ..|+..++.+ +.++.++++|||+|+.+.+.+ ..+++.++++++|
T Consensus 87 FfRDAMGFlLiFDlT~eqSFLnv-rnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~V----------s~~qa~~La~kyg 155 (219)
T KOG0081|consen 87 FFRDAMGFLLIFDLTSEQSFLNV-RNWLSQLQTHAYCENPDIVLCGNKADLEDQRVV----------SEDQAAALADKYG 155 (219)
T ss_pred HHHhhccceEEEeccchHHHHHH-HHHHHHHHHhhccCCCCEEEEcCccchhhhhhh----------hHHHHHHHHHHhC
Confidence 99999999999999999999999 8999988654 478899999999999888875 9999999999999
Q ss_pred CcEEEEeccCCCCCHHHHHHHHHHHHhCCC
Q 028595 151 ASYYIECSSKTQQNVKAVFDAAIKVVIKPP 180 (207)
Q Consensus 151 ~~~~~e~Sa~~~~~i~~~f~~i~~~~~~~~ 180 (207)
+ ||||+||-+|.||++..+-++..++++.
T Consensus 156 l-PYfETSA~tg~Nv~kave~LldlvM~Ri 184 (219)
T KOG0081|consen 156 L-PYFETSACTGTNVEKAVELLLDLVMKRI 184 (219)
T ss_pred C-CeeeeccccCcCHHHHHHHHHHHHHHHH
Confidence 9 9999999999999999999988887653
No 56
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=100.00 E-value=1.4e-33 Score=206.30 Aligned_cols=169 Identities=43% Similarity=0.716 Sum_probs=145.9
Q ss_pred eeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEEE
Q 028595 5 AKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 84 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 84 (207)
+|++++|.+++| ||||++++.++.+...+.||..+.+...+.+++..+.+.+||+||++.+..++..+++++|++|+||
T Consensus 1 ~k~~i~G~~~~G-Ktsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~ 79 (173)
T cd04130 1 LKCVLVGDGAVG-KTSLIVSYTTNGYPTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCF 79 (173)
T ss_pred CEEEEECCCCCC-HHHHHHHHHhCCCCCCCCCceeeeeeEEEEECCEEEEEEEEECCCChhhccccccccCCCcEEEEEE
Confidence 589999999999 9999999999999999999988877778888998999999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCccccc--CCCCCcccCHHHHHHHHHHhCCcEEEEeccCCC
Q 028595 85 SLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKTQ 162 (207)
Q Consensus 85 d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~ 162 (207)
|++++++++.+...|+..+....++.|++++|||+|+.+...... .....+.+..++++.+++..+..+|+++||++|
T Consensus 80 d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~e~Sa~~~ 159 (173)
T cd04130 80 SVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALTQ 159 (173)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCCeEEEEeCCCC
Confidence 999999999985578888876657899999999999865321100 001223468889999999998778999999999
Q ss_pred CCHHHHHHHHHH
Q 028595 163 QNVKAVFDAAIK 174 (207)
Q Consensus 163 ~~i~~~f~~i~~ 174 (207)
.|++++|+.++.
T Consensus 160 ~~v~~lf~~~~~ 171 (173)
T cd04130 160 KNLKEVFDTAIL 171 (173)
T ss_pred CCHHHHHHHHHh
Confidence 999999998864
No 57
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=100.00 E-value=8e-34 Score=205.62 Aligned_cols=160 Identities=30% Similarity=0.480 Sum_probs=143.3
Q ss_pred eeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEEE
Q 028595 5 AKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 84 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 84 (207)
+||+++|.+++| ||||+++++++.+...+.||.++.+.....+++..+.+.+|||||++++..++..+++++|++++||
T Consensus 1 ~ki~v~G~~~~G-KTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T smart00173 1 YKLVVLGSGGVG-KSALTIQFVQGHFVDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVY 79 (164)
T ss_pred CEEEEECCCCCC-HHHHHHHHHhCcCCcccCCchhhhEEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEE
Confidence 489999999999 9999999999999888899998877778888898999999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhcC--CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCCC
Q 028595 85 SLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQ 162 (207)
Q Consensus 85 d~~~~~s~~~~~~~~~~~i~~~~--~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~ 162 (207)
|++++++++.+ ..|...+.+.. .+.|+++|+||+|+.+.+.. ..++++.+++.++. +++++||++|
T Consensus 80 d~~~~~s~~~~-~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~~~----------~~~~~~~~~~~~~~-~~~~~Sa~~~ 147 (164)
T smart00173 80 SITDRQSFEEI-KKFREQILRVKDRDDVPIVLVGNKCDLESERVV----------STEEGKELARQWGC-PFLETSAKER 147 (164)
T ss_pred ECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccccccceE----------cHHHHHHHHHHcCC-EEEEeecCCC
Confidence 99999999999 77777665433 47899999999999765543 77888899999886 9999999999
Q ss_pred CCHHHHHHHHHHHHh
Q 028595 163 QNVKAVFDAAIKVVI 177 (207)
Q Consensus 163 ~~i~~~f~~i~~~~~ 177 (207)
.|++++|+++++.+.
T Consensus 148 ~~i~~l~~~l~~~~~ 162 (164)
T smart00173 148 VNVDEAFYDLVREIR 162 (164)
T ss_pred CCHHHHHHHHHHHHh
Confidence 999999999998765
No 58
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=100.00 E-value=7.1e-34 Score=205.43 Aligned_cols=158 Identities=28% Similarity=0.411 Sum_probs=143.1
Q ss_pred eeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEEC--CeEEEEEEEeCCCCccccccccceecCCcEEE
Q 028595 5 AKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAE--GTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 81 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~--~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i 81 (207)
.||+++|.+++| ||||+++++++.+...+.||++.++ ...+.++ +..+.+.+|||||++.+..++..+++++|+++
T Consensus 1 ~kv~~vG~~~~G-KTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v 79 (162)
T cd04106 1 IKVIVVGNGNVG-KSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACI 79 (162)
T ss_pred CEEEEECCCCCC-HHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEE
Confidence 489999999999 9999999999999888999998777 4466666 77899999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCC
Q 028595 82 LAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT 161 (207)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 161 (207)
+|||++++++++.+ ..|+..+....+++|+++|+||.|+.....+ ..++++.+++.+++ +++++||++
T Consensus 80 ~v~d~~~~~s~~~l-~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~v----------~~~~~~~~~~~~~~-~~~~~Sa~~ 147 (162)
T cd04106 80 LVFSTTDRESFEAI-ESWKEKVEAECGDIPMVLVQTKIDLLDQAVI----------TNEEAEALAKRLQL-PLFRTSVKD 147 (162)
T ss_pred EEEECCCHHHHHHH-HHHHHHHHHhCCCCCEEEEEEChhcccccCC----------CHHHHHHHHHHcCC-eEEEEECCC
Confidence 99999999999998 7899888776778999999999999776553 77889999999998 999999999
Q ss_pred CCCHHHHHHHHHHH
Q 028595 162 QQNVKAVFDAAIKV 175 (207)
Q Consensus 162 ~~~i~~~f~~i~~~ 175 (207)
+.|++++|+++...
T Consensus 148 ~~~v~~l~~~l~~~ 161 (162)
T cd04106 148 DFNVTELFEYLAEK 161 (162)
T ss_pred CCCHHHHHHHHHHh
Confidence 99999999999764
No 59
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=100.00 E-value=1e-33 Score=206.38 Aligned_cols=163 Identities=26% Similarity=0.393 Sum_probs=142.9
Q ss_pred eeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEE
Q 028595 5 AKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA 83 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v 83 (207)
.||+++|.+++| ||||+++|.++.+...|.||++..+ ...+.+++..+.+++|||+|++++..++..+++++|++++|
T Consensus 1 ~ki~ivG~~~vG-KTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv 79 (170)
T cd04108 1 SKVIVVGDLSVG-KTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIV 79 (170)
T ss_pred CEEEEECCCCCC-HHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEE
Confidence 389999999999 9999999999999999999999877 45778889999999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcC-C-CCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCC
Q 028595 84 FSLVSRASYENVLKKWIPELQHYS-P-GVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT 161 (207)
Q Consensus 84 ~d~~~~~s~~~~~~~~~~~i~~~~-~-~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 161 (207)
||+++++++..+ ..|+..+.+.. + +.|+++|+||+|+.+.... .+..++++.+++.++. +|+++||++
T Consensus 80 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~--------~~~~~~~~~~~~~~~~-~~~e~Sa~~ 149 (170)
T cd04108 80 FDLTDVASLEHT-RQWLEDALKENDPSSVLLFLVGTKKDLSSPAQY--------ALMEQDAIKLAAEMQA-EYWSVSALS 149 (170)
T ss_pred EECcCHHHHHHH-HHHHHHHHHhcCCCCCeEEEEEEChhcCccccc--------cccHHHHHHHHHHcCC-eEEEEECCC
Confidence 999999999999 78998875433 3 5789999999998654321 1246778889888887 899999999
Q ss_pred CCCHHHHHHHHHHHHhC
Q 028595 162 QQNVKAVFDAAIKVVIK 178 (207)
Q Consensus 162 ~~~i~~~f~~i~~~~~~ 178 (207)
|.|++++|+.+++.+.+
T Consensus 150 g~~v~~lf~~l~~~~~~ 166 (170)
T cd04108 150 GENVREFFFRVAALTFE 166 (170)
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999999988754
No 60
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=100.00 E-value=1.9e-33 Score=209.00 Aligned_cols=166 Identities=30% Similarity=0.431 Sum_probs=145.3
Q ss_pred eeEEEEecccccceeeeeeeccCCCCCc-cccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEE
Q 028595 5 AKLACLFATQVTSFLLYVLSVSGRSSIW-DYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 82 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~~~~~~-~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~ 82 (207)
.||+++|.+++| ||||+++|+++++.. .|.+|++..+ ...+.+++..+.+.+||++|++++..++..++.++|++++
T Consensus 1 ~ki~vvG~~~vG-KSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iil 79 (193)
T cd04118 1 VKVVMLGKESVG-KTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIV 79 (193)
T ss_pred CEEEEECCCCCC-HHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCchhhhhhhHhhcCCCCEEEE
Confidence 489999999999 999999999999874 6889998877 4578889999999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCCC
Q 028595 83 AFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQ 162 (207)
Q Consensus 83 v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~ 162 (207)
|||++++++++.+ ..|+..+....++.|+++|+||+|+.+... ....+..++++.++..++. +++++||+++
T Consensus 80 v~d~~~~~s~~~~-~~~~~~i~~~~~~~piilv~nK~Dl~~~~~------~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~ 151 (193)
T cd04118 80 CYDLTDSSSFERA-KFWVKELQNLEEHCKIYLCGTKSDLIEQDR------SLRQVDFHDVQDFADEIKA-QHFETSSKTG 151 (193)
T ss_pred EEECCCHHHHHHH-HHHHHHHHhcCCCCCEEEEEEccccccccc------ccCccCHHHHHHHHHHcCC-eEEEEeCCCC
Confidence 9999999999998 789998877667899999999999864321 1123466788899988887 8999999999
Q ss_pred CCHHHHHHHHHHHHhCC
Q 028595 163 QNVKAVFDAAIKVVIKP 179 (207)
Q Consensus 163 ~~i~~~f~~i~~~~~~~ 179 (207)
.|++++|+++++.+.+.
T Consensus 152 ~gv~~l~~~i~~~~~~~ 168 (193)
T cd04118 152 QNVDELFQKVAEDFVSR 168 (193)
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 99999999999988654
No 61
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=100.00 E-value=1e-33 Score=205.41 Aligned_cols=158 Identities=23% Similarity=0.365 Sum_probs=140.6
Q ss_pred eeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEEE
Q 028595 5 AKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 84 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 84 (207)
+||+++|.+++| ||||+++++++.+...+.||.+..+...+..++..+.+.+|||+|++++..++..+++++|++++||
T Consensus 2 ~kv~~vG~~~vG-KTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~ 80 (165)
T cd04140 2 YRVVVFGAGGVG-KSSLVLRFVKGTFRESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQFPAMQRLSISKGHAFILVY 80 (165)
T ss_pred eEEEEECCCCCC-HHHHHHHHHhCCCCCCcCCcchheEEEEEEECCEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEE
Confidence 689999999999 9999999999999888999998877777777888899999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhcC----CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccC
Q 028595 85 SLVSRASYENVLKKWIPELQHYS----PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK 160 (207)
Q Consensus 85 d~~~~~s~~~~~~~~~~~i~~~~----~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 160 (207)
|++++++++.+ ..|+..+.... +++|+++|+||+|+.+.+.+ ..+++..++..+++ +|+++||+
T Consensus 81 d~~~~~s~~~~-~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v----------~~~~~~~~~~~~~~-~~~e~SA~ 148 (165)
T cd04140 81 SVTSKQSLEEL-KPIYELICEIKGNNIEKIPIMLVGNKCDESHKREV----------SSNEGAACATEWNC-AFMETSAK 148 (165)
T ss_pred ECCCHHHHHHH-HHHHHHHHHHhcCCCCCCCEEEEEECccccccCee----------cHHHHHHHHHHhCC-cEEEeecC
Confidence 99999999998 77877765532 57999999999999765543 77888889988887 89999999
Q ss_pred CCCCHHHHHHHHHHH
Q 028595 161 TQQNVKAVFDAAIKV 175 (207)
Q Consensus 161 ~~~~i~~~f~~i~~~ 175 (207)
+|.|++++|++++..
T Consensus 149 ~g~~v~~~f~~l~~~ 163 (165)
T cd04140 149 TNHNVQELFQELLNL 163 (165)
T ss_pred CCCCHHHHHHHHHhc
Confidence 999999999999753
No 62
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=100.00 E-value=1.9e-33 Score=203.33 Aligned_cols=159 Identities=26% Similarity=0.383 Sum_probs=139.9
Q ss_pred eeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEE
Q 028595 5 AKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA 83 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v 83 (207)
+||+++|.+++| ||||++++.++.+.+.+.++.+..+ ...+.+++..+.+.+|||+|++.+..++..+++++|++++|
T Consensus 1 ~ki~vvG~~~vG-KTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v 79 (161)
T cd04124 1 VKIILLGDSAVG-KSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILV 79 (161)
T ss_pred CEEEEECCCCCC-HHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEE
Confidence 489999999999 9999999999998888888876554 45677788899999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCCCC
Q 028595 84 FSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ 163 (207)
Q Consensus 84 ~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~ 163 (207)
||++++.+++.+ ..|+..+.+..++.|+++|+||+|+.+. ..++...+++..++ +++++||++|.
T Consensus 80 ~d~~~~~s~~~~-~~~~~~i~~~~~~~p~ivv~nK~Dl~~~-------------~~~~~~~~~~~~~~-~~~~~Sa~~~~ 144 (161)
T cd04124 80 FDVTRKITYKNL-SKWYEELREYRPEIPCIVVANKIDLDPS-------------VTQKKFNFAEKHNL-PLYYVSAADGT 144 (161)
T ss_pred EECCCHHHHHHH-HHHHHHHHHhCCCCcEEEEEECccCchh-------------HHHHHHHHHHHcCC-eEEEEeCCCCC
Confidence 999999999998 7899999877678999999999998432 23456677777777 89999999999
Q ss_pred CHHHHHHHHHHHHhCC
Q 028595 164 NVKAVFDAAIKVVIKP 179 (207)
Q Consensus 164 ~i~~~f~~i~~~~~~~ 179 (207)
|++++|+.+++.+...
T Consensus 145 gv~~l~~~l~~~~~~~ 160 (161)
T cd04124 145 NVVKLFQDAIKLAVSY 160 (161)
T ss_pred CHHHHHHHHHHHHHhc
Confidence 9999999999888765
No 63
>PLN03110 Rab GTPase; Provisional
Probab=100.00 E-value=1.7e-33 Score=212.69 Aligned_cols=164 Identities=24% Similarity=0.431 Sum_probs=148.5
Q ss_pred ccceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEE
Q 028595 2 ELLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF 80 (207)
Q Consensus 2 ~~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ 80 (207)
+..+||+++|.++|| ||||+++|.++.+...+.+|++.++ ...+.+++..+.+.|||++|++++..++..++++++++
T Consensus 10 ~~~~Ki~ivG~~~vG-KStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~ 88 (216)
T PLN03110 10 DYLFKIVLIGDSGVG-KSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGA 88 (216)
T ss_pred CceeEEEEECCCCCC-HHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhCCCCEE
Confidence 356899999999999 9999999999998888899999887 55788899999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEecc
Q 028595 81 VLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSS 159 (207)
Q Consensus 81 i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa 159 (207)
++|||++++++++.+ ..|+..+.... .++|+++|+||+|+.+.+.+ ..++++.++..+++ +++++||
T Consensus 89 ilv~d~~~~~s~~~~-~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~----------~~~~~~~l~~~~~~-~~~e~SA 156 (216)
T PLN03110 89 LLVYDITKRQTFDNV-QRWLRELRDHADSNIVIMMAGNKSDLNHLRSV----------AEEDGQALAEKEGL-SFLETSA 156 (216)
T ss_pred EEEEECCChHHHHHH-HHHHHHHHHhCCCCCeEEEEEEChhcccccCC----------CHHHHHHHHHHcCC-EEEEEeC
Confidence 999999999999998 78998887765 47999999999999766553 77889999998887 9999999
Q ss_pred CCCCCHHHHHHHHHHHHhC
Q 028595 160 KTQQNVKAVFDAAIKVVIK 178 (207)
Q Consensus 160 ~~~~~i~~~f~~i~~~~~~ 178 (207)
++|.|++++|++++..+..
T Consensus 157 ~~g~~v~~lf~~l~~~i~~ 175 (216)
T PLN03110 157 LEATNVEKAFQTILLEIYH 175 (216)
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 9999999999999988853
No 64
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=100.00 E-value=2.2e-33 Score=204.34 Aligned_cols=164 Identities=26% Similarity=0.432 Sum_probs=146.8
Q ss_pred ccceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEE
Q 028595 2 ELLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF 80 (207)
Q Consensus 2 ~~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ 80 (207)
+..+||+++|.+++| ||||++++.++++...+.+|.+.++ ...+.+++..+.+.+||++|++++..+...+++++|++
T Consensus 2 ~~~~ki~vvG~~~vG-KSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 80 (168)
T cd01866 2 AYLFKYIIIGDTGVG-KSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGA 80 (168)
T ss_pred CcceEEEEECCCCCC-HHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEE
Confidence 456899999999999 9999999999998888888888776 45677888889999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEecc
Q 028595 81 VLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSS 159 (207)
Q Consensus 81 i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa 159 (207)
++|||++++++++.+ ..|+..+.... ++.|+++|+||.|+.+... +..++++.++..++. +++++||
T Consensus 81 l~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~e~Sa 148 (168)
T cd01866 81 LLVYDITRRETFNHL-TSWLEDARQHSNSNMTIMLIGNKCDLESRRE----------VSYEEGEAFAKEHGL-IFMETSA 148 (168)
T ss_pred EEEEECCCHHHHHHH-HHHHHHHHHhCCCCCcEEEEEECcccccccC----------CCHHHHHHHHHHcCC-EEEEEeC
Confidence 999999999999999 78998887654 6899999999999976544 378889999999987 9999999
Q ss_pred CCCCCHHHHHHHHHHHHhC
Q 028595 160 KTQQNVKAVFDAAIKVVIK 178 (207)
Q Consensus 160 ~~~~~i~~~f~~i~~~~~~ 178 (207)
++++|++++|.++++.+.+
T Consensus 149 ~~~~~i~~~~~~~~~~~~~ 167 (168)
T cd01866 149 KTASNVEEAFINTAKEIYE 167 (168)
T ss_pred CCCCCHHHHHHHHHHHHHh
Confidence 9999999999999988754
No 65
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=100.00 E-value=5.5e-33 Score=205.61 Aligned_cols=176 Identities=39% Similarity=0.594 Sum_probs=149.9
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEE
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA 83 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v 83 (207)
+.||+++|.+++| ||||+++|..+.+.+.+.+|.+..+...+.+++..+.+.+||++|++.+......+++++|+++++
T Consensus 1 ~~Ki~ivG~~g~G-KStLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv 79 (187)
T cd04129 1 RRKLVIVGDGACG-KTSLLSVFTLGEFPEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIG 79 (187)
T ss_pred CeEEEEECCCCCC-HHHHHHHHHhCCCCcccCCcccceEEEEEEECCEEEEEEEEECCCChhccccchhhcCCCCEEEEE
Confidence 4699999999999 999999999888888888888887777778888889999999999999888887888999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCCCC
Q 028595 84 FSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ 163 (207)
Q Consensus 84 ~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~ 163 (207)
||+++.++++.+...|+..+....+++|+++||||+|+.+...........+.+..++++.+++.++..+|+++||++|.
T Consensus 80 ~~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~ 159 (187)
T cd04129 80 FAVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYMECSALTGE 159 (187)
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcEEEEccCCCCC
Confidence 99999999999966799999877778999999999998643221111112233567889999999997689999999999
Q ss_pred CHHHHHHHHHHHHhCCC
Q 028595 164 NVKAVFDAAIKVVIKPP 180 (207)
Q Consensus 164 ~i~~~f~~i~~~~~~~~ 180 (207)
|++++|+++++.++.-+
T Consensus 160 ~v~~~f~~l~~~~~~~~ 176 (187)
T cd04129 160 GVDDVFEAATRAALLVR 176 (187)
T ss_pred CHHHHHHHHHHHHhccc
Confidence 99999999998887665
No 66
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=100.00 E-value=2.1e-34 Score=192.96 Aligned_cols=159 Identities=28% Similarity=0.469 Sum_probs=145.7
Q ss_pred EEEecccccceeeeeeeccCCCCC-ccccCceeeeee-eEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEEEe
Q 028595 8 ACLFATQVTSFLLYVLSVSGRSSI-WDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS 85 (207)
Q Consensus 8 ~iiG~~~~GgKssli~~l~~~~~~-~~~~~t~~~~~~-~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 85 (207)
+++|++.+| ||+|+-+|..+.|. ...++|+|.+|. +-+.++++.+++++|||+|||+|++....|++++|+.+++||
T Consensus 1 mllgds~~g-ktcllir~kdgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrda~allllyd 79 (192)
T KOG0083|consen 1 MLLGDSCTG-KTCLLIRFKDGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYD 79 (192)
T ss_pred CccccCccC-ceEEEEEeccCceecCceeeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcccceeeeeee
Confidence 368999999 99999999988874 457789999884 477889999999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCCCCC
Q 028595 86 LVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQN 164 (207)
Q Consensus 86 ~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 164 (207)
+.|+.||+++ ..|+.+|.++. ..+.+.++|||+|+.+++.+ ..++++++++.+++ ||+|+||++|.|
T Consensus 80 iankasfdn~-~~wlsei~ey~k~~v~l~llgnk~d~a~er~v----------~~ddg~kla~~y~i-pfmetsaktg~n 147 (192)
T KOG0083|consen 80 IANKASFDNC-QAWLSEIHEYAKEAVALMLLGNKCDLAHERAV----------KRDDGEKLAEAYGI-PFMETSAKTGFN 147 (192)
T ss_pred cccchhHHHH-HHHHHHHHHHHHhhHhHhhhccccccchhhcc----------ccchHHHHHHHHCC-Cceecccccccc
Confidence 9999999999 99999999987 57888999999999888775 88999999999999 999999999999
Q ss_pred HHHHHHHHHHHHhCC
Q 028595 165 VKAVFDAAIKVVIKP 179 (207)
Q Consensus 165 i~~~f~~i~~~~~~~ 179 (207)
++-.|..|.+.+.+.
T Consensus 148 vd~af~~ia~~l~k~ 162 (192)
T KOG0083|consen 148 VDLAFLAIAEELKKL 162 (192)
T ss_pred HhHHHHHHHHHHHHh
Confidence 999999999888643
No 67
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=100.00 E-value=1.9e-33 Score=204.00 Aligned_cols=161 Identities=28% Similarity=0.405 Sum_probs=144.2
Q ss_pred cceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEE
Q 028595 3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 81 (207)
Q Consensus 3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i 81 (207)
..+||+++|.+++| ||||++++..+.+...+.+|.+.++ ...+.+++..+.+.+||+||++.+..++..+++++|+++
T Consensus 2 ~~~kv~vvG~~~~G-KTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~l 80 (165)
T cd01864 2 FLFKIILIGDSNVG-KTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRTITQSYYRSANGAI 80 (165)
T ss_pred ceeEEEEECCCCCC-HHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEE
Confidence 46899999999999 9999999999998888888887666 456778888899999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccC
Q 028595 82 LAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK 160 (207)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 160 (207)
+|||++++++++.+ ..|+..+.... +++|+++|+||+|+.+.+.+ ..+++..+++.++...++++||+
T Consensus 81 lv~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~~~----------~~~~~~~~~~~~~~~~~~e~Sa~ 149 (165)
T cd01864 81 IAYDITRRSSFESV-PHWIEEVEKYGASNVVLLLIGNKCDLEEQREV----------LFEEACTLAEKNGMLAVLETSAK 149 (165)
T ss_pred EEEECcCHHHHHhH-HHHHHHHHHhCCCCCcEEEEEECccccccccc----------CHHHHHHHHHHcCCcEEEEEECC
Confidence 99999999999998 78999887654 58999999999999776553 77889999999887688999999
Q ss_pred CCCCHHHHHHHHHHH
Q 028595 161 TQQNVKAVFDAAIKV 175 (207)
Q Consensus 161 ~~~~i~~~f~~i~~~ 175 (207)
+|.|++++|+++++.
T Consensus 150 ~~~~v~~~~~~l~~~ 164 (165)
T cd01864 150 ESQNVEEAFLLMATE 164 (165)
T ss_pred CCCCHHHHHHHHHHh
Confidence 999999999999865
No 68
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=100.00 E-value=1.8e-33 Score=209.49 Aligned_cols=155 Identities=21% Similarity=0.346 Sum_probs=137.9
Q ss_pred EecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEEEeCCC
Q 028595 10 LFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVS 88 (207)
Q Consensus 10 iG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 88 (207)
+|.++|| ||||+++|+.+.+...|.||++.++ ...+.+++..+.+.||||+|++++..++..|++++|++|+|||+++
T Consensus 1 vG~~~vG-KTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~ 79 (200)
T smart00176 1 VGDGGTG-KTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTA 79 (200)
T ss_pred CCCCCCC-HHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCC
Confidence 6999999 9999999999998888999998777 5577888899999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCCCCCHHHH
Q 028595 89 RASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAV 168 (207)
Q Consensus 89 ~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~ 168 (207)
++|+..+ ..|+..+.+..+++|+++||||+|+... . +..+. ..+++..++ +|++|||++|.||+++
T Consensus 80 ~~S~~~i-~~w~~~i~~~~~~~piilvgNK~Dl~~~-~----------v~~~~-~~~~~~~~~-~~~e~SAk~~~~v~~~ 145 (200)
T smart00176 80 RVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDVKDR-K----------VKAKS-ITFHRKKNL-QYYDISAKSNYNFEKP 145 (200)
T ss_pred hHHHHHH-HHHHHHHHHhCCCCCEEEEEECcccccc-c----------CCHHH-HHHHHHcCC-EEEEEeCCCCCCHHHH
Confidence 9999999 7899999887788999999999998543 2 24333 467888887 8999999999999999
Q ss_pred HHHHHHHHhCC
Q 028595 169 FDAAIKVVIKP 179 (207)
Q Consensus 169 f~~i~~~~~~~ 179 (207)
|+++++.+...
T Consensus 146 F~~l~~~i~~~ 156 (200)
T smart00176 146 FLWLARKLIGD 156 (200)
T ss_pred HHHHHHHHHhc
Confidence 99999988754
No 69
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=100.00 E-value=2.7e-33 Score=203.06 Aligned_cols=161 Identities=26% Similarity=0.439 Sum_probs=144.9
Q ss_pred cceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEE
Q 028595 3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 81 (207)
Q Consensus 3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i 81 (207)
...||+++|.+++| ||||++++.++.+...+.||.+.++ ...+..++..+.+.+||+||++++..++..+++++++++
T Consensus 2 ~~~ki~vvG~~~~G-KSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i 80 (165)
T cd01868 2 YLFKIVLIGDSGVG-KSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGAL 80 (165)
T ss_pred CceEEEEECCCCCC-HHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHCCCCEEE
Confidence 35799999999999 9999999999998888889998777 557888888899999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhcCC-CCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccC
Q 028595 82 LAFSLVSRASYENVLKKWIPELQHYSP-GVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK 160 (207)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~~i~~~~~-~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 160 (207)
+|||+++++++.++ ..|+..+.+..+ ++|+++|+||+|+...+.. ..++.+.+++..+. +++++||+
T Consensus 81 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~~~~----------~~~~~~~~~~~~~~-~~~~~Sa~ 148 (165)
T cd01868 81 LVYDITKKQTFENV-ERWLKELRDHADSNIVIMLVGNKSDLRHLRAV----------PTEEAKAFAEKNGL-SFIETSAL 148 (165)
T ss_pred EEEECcCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECccccccccC----------CHHHHHHHHHHcCC-EEEEEECC
Confidence 99999999999999 789998877664 6999999999999766553 77889999998887 89999999
Q ss_pred CCCCHHHHHHHHHHHH
Q 028595 161 TQQNVKAVFDAAIKVV 176 (207)
Q Consensus 161 ~~~~i~~~f~~i~~~~ 176 (207)
+|.|++++|++++..+
T Consensus 149 ~~~~v~~l~~~l~~~i 164 (165)
T cd01868 149 DGTNVEEAFKQLLTEI 164 (165)
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999999998765
No 70
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=100.00 E-value=1.9e-33 Score=211.65 Aligned_cols=163 Identities=28% Similarity=0.411 Sum_probs=144.4
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEE-CCeEEEEEEEeCCCCccccccccceecCCcEEE
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVA-EGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 81 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i 81 (207)
.+||+++|.++|| ||||+++|+++.+...+.||++.++ ...+.+ ++..+.+++|||+|++.+..++..+++++|+++
T Consensus 2 ~~KIvvvG~~~vG-KTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 80 (211)
T cd04111 2 QFRLIVIGDSTVG-KSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVL 80 (211)
T ss_pred ceEEEEECCCCCC-HHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEE
Confidence 5799999999999 9999999999998888889988666 445655 567899999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhcC--CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEecc
Q 028595 82 LAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSS 159 (207)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa 159 (207)
+|||++++++++++ ..|+..+.... ..+|++|||||+|+.+.+.+ ..++++.+++.++. +|+++||
T Consensus 81 lv~D~~~~~Sf~~l-~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~~~v----------~~~~~~~~~~~~~~-~~~e~Sa 148 (211)
T cd04111 81 LVFDITNRESFEHV-HDWLEEARSHIQPHRPVFILVGHKCDLESQRQV----------TREEAEKLAKDLGM-KYIETSA 148 (211)
T ss_pred EEEECCCHHHHHHH-HHHHHHHHHhcCCCCCeEEEEEEcccccccccc----------CHHHHHHHHHHhCC-EEEEEeC
Confidence 99999999999999 78988886554 35788999999999776553 88889999999996 9999999
Q ss_pred CCCCCHHHHHHHHHHHHhCC
Q 028595 160 KTQQNVKAVFDAAIKVVIKP 179 (207)
Q Consensus 160 ~~~~~i~~~f~~i~~~~~~~ 179 (207)
++|.|++++|++|++.+.+.
T Consensus 149 k~g~~v~e~f~~l~~~~~~~ 168 (211)
T cd04111 149 RTGDNVEEAFELLTQEIYER 168 (211)
T ss_pred CCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999988754
No 71
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=100.00 E-value=4.9e-33 Score=203.56 Aligned_cols=172 Identities=41% Similarity=0.720 Sum_probs=147.3
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEE
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA 83 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v 83 (207)
+.||+++|.+++| ||||+++|.++.+...+.||.+..+...+.+++..+.+.+|||+|++.+..++..++.++|++++|
T Consensus 1 ~~ki~iiG~~~~G-KTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v 79 (175)
T cd01870 1 RKKLVIVGDGACG-KTCLLIVFSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMC 79 (175)
T ss_pred CcEEEEECCCCCC-HHHHHHHHhcCCCCCCCCCccccceEEEEEECCEEEEEEEEeCCCchhhhhccccccCCCCEEEEE
Confidence 4699999999999 999999999999988899999888777778889999999999999999999988999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccC--CCCCcccCHHHHHHHHHHhCCcEEEEeccCC
Q 028595 84 FSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLAD--HPGLVPVTTAQGEELRKQIGASYYIECSSKT 161 (207)
Q Consensus 84 ~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 161 (207)
||++++++++.+...|...+.+..++.|+++|+||+|+.+......+ ......+...+++++++.++..+++++||++
T Consensus 80 ~~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~ 159 (175)
T cd01870 80 FSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFGYMECSAKT 159 (175)
T ss_pred EECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCcEEEEecccc
Confidence 99999999999866788888776678999999999998654321110 0012235678899999998876899999999
Q ss_pred CCCHHHHHHHHHHHH
Q 028595 162 QQNVKAVFDAAIKVV 176 (207)
Q Consensus 162 ~~~i~~~f~~i~~~~ 176 (207)
|.|++++|+++++.+
T Consensus 160 ~~~v~~lf~~l~~~~ 174 (175)
T cd01870 160 KEGVREVFEMATRAA 174 (175)
T ss_pred CcCHHHHHHHHHHHh
Confidence 999999999998764
No 72
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=100.00 E-value=2.9e-33 Score=203.89 Aligned_cols=160 Identities=29% Similarity=0.452 Sum_probs=141.9
Q ss_pred cceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEE
Q 028595 3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 81 (207)
Q Consensus 3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i 81 (207)
...||+++|.+++| ||||+++|.++.+...+.+|.+..+ ...+.+++..+.+.|||+||++++..++..+++++|+++
T Consensus 4 ~~~ki~vvG~~~~G-KTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i 82 (170)
T cd04116 4 SLLKVILLGDGGVG-KSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCL 82 (170)
T ss_pred eEEEEEEECCCCCC-HHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCChHHHHHhHHHHhcCCCEEE
Confidence 46899999999999 9999999999999888888988776 457788999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhcC-----CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEE
Q 028595 82 LAFSLVSRASYENVLKKWIPELQHYS-----PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIE 156 (207)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~~i~~~~-----~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e 156 (207)
+|||++++++++.+ ..|...+.... +++|+++|+||+|+.+ +. +..++++++++.++..++++
T Consensus 83 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-~~----------~~~~~~~~~~~~~~~~~~~e 150 (170)
T cd04116 83 LTFAVDDSQSFQNL-SNWKKEFIYYADVKEPESFPFVVLGNKNDIPE-RQ----------VSTEEAQAWCRENGDYPYFE 150 (170)
T ss_pred EEEECCCHHHHHhH-HHHHHHHHHhcccccCCCCcEEEEEECccccc-cc----------cCHHHHHHHHHHCCCCeEEE
Confidence 99999999999998 78887665432 4689999999999863 22 37789999999998668999
Q ss_pred eccCCCCCHHHHHHHHHHH
Q 028595 157 CSSKTQQNVKAVFDAAIKV 175 (207)
Q Consensus 157 ~Sa~~~~~i~~~f~~i~~~ 175 (207)
+||++|.|+.++|+.+++.
T Consensus 151 ~Sa~~~~~v~~~~~~~~~~ 169 (170)
T cd04116 151 TSAKDATNVAAAFEEAVRR 169 (170)
T ss_pred EECCCCCCHHHHHHHHHhh
Confidence 9999999999999999875
No 73
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=100.00 E-value=2.9e-33 Score=202.54 Aligned_cols=160 Identities=29% Similarity=0.476 Sum_probs=143.1
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEE
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA 83 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v 83 (207)
.+||+++|.+++| ||||+++++++.+...+.||.+..+.....+++..+.+.+|||||++++..++..+++++|++++|
T Consensus 2 ~~ki~i~G~~~~G-Ktsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv 80 (164)
T cd04145 2 TYKLVVVGGGGVG-KSALTIQFIQSYFVTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFSAMREQYMRTGEGFLLV 80 (164)
T ss_pred ceEEEEECCCCCc-HHHHHHHHHhCCCCcccCCCccceEEEEEEECCEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEE
Confidence 4799999999999 999999999998888889999887777778899899999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcC--CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCC
Q 028595 84 FSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT 161 (207)
Q Consensus 84 ~d~~~~~s~~~~~~~~~~~i~~~~--~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 161 (207)
||+++.++++.+ ..|...+.... .+.|+++++||+|+...+. +..+++.++++.++. +++++||++
T Consensus 81 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~ 148 (164)
T cd04145 81 FSVTDRGSFEEV-DKFHTQILRVKDRDEFPMILVGNKADLEHQRK----------VSREEGQELARKLKI-PYIETSAKD 148 (164)
T ss_pred EECCCHHHHHHH-HHHHHHHHHHhCCCCCCEEEEeeCccccccce----------ecHHHHHHHHHHcCC-cEEEeeCCC
Confidence 999999999999 77877776542 5799999999999976554 377788999998887 999999999
Q ss_pred CCCHHHHHHHHHHHH
Q 028595 162 QQNVKAVFDAAIKVV 176 (207)
Q Consensus 162 ~~~i~~~f~~i~~~~ 176 (207)
|.|++++|+++++.+
T Consensus 149 ~~~i~~l~~~l~~~~ 163 (164)
T cd04145 149 RLNVDKAFHDLVRVI 163 (164)
T ss_pred CCCHHHHHHHHHHhh
Confidence 999999999998764
No 74
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=100.00 E-value=9.8e-33 Score=204.15 Aligned_cols=163 Identities=29% Similarity=0.476 Sum_probs=152.0
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEE
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA 83 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v 83 (207)
..||+++|..+|| ||+|..+|..+.|...|.||+++.|.+.+.+++..+.+.|+||+|++.+..+...++.++|++++|
T Consensus 3 ~~kvvvlG~~gVG-KSal~~qf~~~~f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lV 81 (196)
T KOG0395|consen 3 EYKVVVLGAGGVG-KSALTIQFLTGRFVEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLV 81 (196)
T ss_pred ceEEEEECCCCCC-cchheeeecccccccccCCCccccceEEEEECCEEEEEEEEcCCCcccChHHHHHhhccCcEEEEE
Confidence 5799999999999 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcC--CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCC
Q 028595 84 FSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT 161 (207)
Q Consensus 84 ~d~~~~~s~~~~~~~~~~~i~~~~--~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 161 (207)
|+++++.||+.+ ..+...|.+.. ..+|+++||||+|+...+.+ ..++++.++..+++ +|+|+||+.
T Consensus 82 ysitd~~SF~~~-~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V----------~~eeg~~la~~~~~-~f~E~Sak~ 149 (196)
T KOG0395|consen 82 YSITDRSSFEEA-KQLREQILRVKGRDDVPIILVGNKCDLERERQV----------SEEEGKALARSWGC-AFIETSAKL 149 (196)
T ss_pred EECCCHHHHHHH-HHHHHHHHHhhCcCCCCEEEEEEcccchhcccc----------CHHHHHHHHHhcCC-cEEEeeccC
Confidence 999999999999 77877774322 46899999999999888775 99999999999999 699999999
Q ss_pred CCCHHHHHHHHHHHHhCC
Q 028595 162 QQNVKAVFDAAIKVVIKP 179 (207)
Q Consensus 162 ~~~i~~~f~~i~~~~~~~ 179 (207)
+.+++++|..+++.+-..
T Consensus 150 ~~~v~~~F~~L~r~~~~~ 167 (196)
T KOG0395|consen 150 NYNVDEVFYELVREIRLP 167 (196)
T ss_pred CcCHHHHHHHHHHHHHhh
Confidence 999999999999988763
No 75
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=100.00 E-value=4.4e-33 Score=200.65 Aligned_cols=155 Identities=24% Similarity=0.273 Sum_probs=131.3
Q ss_pred eeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEEE
Q 028595 5 AKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 84 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 84 (207)
.||+++|..++| ||||++++..+.+...+.|+ +..+...+.++|..+.+.+|||+|++. ..+++++|++++||
T Consensus 1 ~ki~vvG~~gvG-KTsli~~~~~~~f~~~~~~~-~~~~~~~i~~~~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~ 73 (158)
T cd04103 1 LKLGIVGNLQSG-KSALVHRYLTGSYVQLESPE-GGRFKKEVLVDGQSHLLLIRDEGGAPD-----AQFASWVDAVIFVF 73 (158)
T ss_pred CEEEEECCCCCc-HHHHHHHHHhCCCCCCCCCC-ccceEEEEEECCEEEEEEEEECCCCCc-----hhHHhcCCEEEEEE
Confidence 489999999999 99999999999887777665 455667788999999999999999975 35678899999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhcC--CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCCC
Q 028595 85 SLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQ 162 (207)
Q Consensus 85 d~~~~~s~~~~~~~~~~~i~~~~--~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~ 162 (207)
|+++++||+++ ..|+..+.... +++|+++||||.|+.... .+.+..++++++++..+...|+||||++|
T Consensus 74 d~~~~~sf~~~-~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~--------~~~v~~~~~~~~~~~~~~~~~~e~SAk~~ 144 (158)
T cd04103 74 SLENEASFQTV-YNLYHQLSSYRNISEIPLILVGTQDAISESN--------PRVIDDARARQLCADMKRCSYYETCATYG 144 (158)
T ss_pred ECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEeeHHHhhhcC--------CcccCHHHHHHHHHHhCCCcEEEEecCCC
Confidence 99999999999 67988887654 579999999999985321 12258889999998875339999999999
Q ss_pred CCHHHHHHHHHHH
Q 028595 163 QNVKAVFDAAIKV 175 (207)
Q Consensus 163 ~~i~~~f~~i~~~ 175 (207)
.||+++|+.+++.
T Consensus 145 ~~i~~~f~~~~~~ 157 (158)
T cd04103 145 LNVERVFQEAAQK 157 (158)
T ss_pred CCHHHHHHHHHhh
Confidence 9999999999864
No 76
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=100.00 E-value=5.6e-33 Score=200.65 Aligned_cols=158 Identities=26% Similarity=0.415 Sum_probs=142.5
Q ss_pred eeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEE
Q 028595 5 AKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA 83 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v 83 (207)
.||+++|.+++| ||||++++.++.+...+.++.+..+ ...+.+++..+.+.+||+||++.+..++..+++++|++++|
T Consensus 1 ~ki~v~G~~~vG-KTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v 79 (161)
T cd04113 1 FKFIIIGSSGTG-KSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLV 79 (161)
T ss_pred CEEEEECCCCCC-HHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEE
Confidence 489999999999 9999999999998888888888766 45677888889999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCCC
Q 028595 84 FSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQ 162 (207)
Q Consensus 84 ~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~ 162 (207)
||+++++++..+ ..|+..+.... ++.|+++++||+|+.+.+. +..+++..+++.++. +++++||+++
T Consensus 80 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~ 147 (161)
T cd04113 80 YDITNRTSFEAL-PTWLSDARALASPNIVVILVGNKSDLADQRE----------VTFLEASRFAQENGL-LFLETSALTG 147 (161)
T ss_pred EECCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEEchhcchhcc----------CCHHHHHHHHHHcCC-EEEEEECCCC
Confidence 999999999999 78988876554 6899999999999976554 388899999999996 9999999999
Q ss_pred CCHHHHHHHHHHH
Q 028595 163 QNVKAVFDAAIKV 175 (207)
Q Consensus 163 ~~i~~~f~~i~~~ 175 (207)
.|++++|+++++.
T Consensus 148 ~~i~~~~~~~~~~ 160 (161)
T cd04113 148 ENVEEAFLKCARS 160 (161)
T ss_pred CCHHHHHHHHHHh
Confidence 9999999999875
No 77
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=100.00 E-value=1.1e-32 Score=211.54 Aligned_cols=163 Identities=27% Similarity=0.349 Sum_probs=141.9
Q ss_pred eeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEEE
Q 028595 5 AKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 84 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 84 (207)
+||+++|.+++| ||||+++|+++.+...|.||+++.+...+.+++..+.+.||||+|++.+..++..++.++|++|+||
T Consensus 1 ~KVvvlG~~gvG-KTSLi~r~~~~~f~~~y~pTi~d~~~k~~~i~~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVf 79 (247)
T cd04143 1 YRMVVLGASKVG-KTAIVSRFLGGRFEEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVF 79 (247)
T ss_pred CEEEEECcCCCC-HHHHHHHHHcCCCCCCCCCChhHhEEEEEEECCEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEE
Confidence 489999999999 9999999999999888999998777778888999999999999999999988888999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhc----------CCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEE
Q 028595 85 SLVSRASYENVLKKWIPELQHY----------SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYY 154 (207)
Q Consensus 85 d~~~~~s~~~~~~~~~~~i~~~----------~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 154 (207)
|+++++||+++ ..|+..+... ..+.|+++|+||+|+...+. +..+++.+++.......+
T Consensus 80 dv~~~~Sf~~i-~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~----------v~~~ei~~~~~~~~~~~~ 148 (247)
T cd04143 80 SLDNRESFEEV-CRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPRE----------VQRDEVEQLVGGDENCAY 148 (247)
T ss_pred eCCCHHHHHHH-HHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccc----------cCHHHHHHHHHhcCCCEE
Confidence 99999999999 7887777542 24799999999999976544 377788888765433389
Q ss_pred EEeccCCCCCHHHHHHHHHHHHhCC
Q 028595 155 IECSSKTQQNVKAVFDAAIKVVIKP 179 (207)
Q Consensus 155 ~e~Sa~~~~~i~~~f~~i~~~~~~~ 179 (207)
+++||++|.|++++|+++++.+..+
T Consensus 149 ~evSAktg~gI~elf~~L~~~~~~p 173 (247)
T cd04143 149 FEVSAKKNSNLDEMFRALFSLAKLP 173 (247)
T ss_pred EEEeCCCCCCHHHHHHHHHHHhccc
Confidence 9999999999999999999877543
No 78
>PLN03108 Rab family protein; Provisional
Probab=100.00 E-value=1.1e-32 Score=207.42 Aligned_cols=163 Identities=25% Similarity=0.421 Sum_probs=146.5
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEE
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 82 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~ 82 (207)
.+||+++|.+++| ||||+++|+++.+...+.||++.++ ...+.+++..+.+.+|||+|++.+..++..+++++|++++
T Consensus 6 ~~kivivG~~gvG-KStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~vl 84 (210)
T PLN03108 6 LFKYIIIGDTGVG-KSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALL 84 (210)
T ss_pred ceEEEEECCCCCC-HHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEE
Confidence 5899999999999 9999999999998888889998777 4577888989999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCC
Q 028595 83 AFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT 161 (207)
Q Consensus 83 v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 161 (207)
|||++++++++.+ ..|+..+.... +..|+++++||+|+.+.+.+ ..++++++++.+++ +|+++||++
T Consensus 85 v~D~~~~~s~~~l-~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~~~----------~~~~~~~~~~~~~~-~~~e~Sa~~ 152 (210)
T PLN03108 85 VYDITRRETFNHL-ASWLEDARQHANANMTIMLIGNKCDLAHRRAV----------STEEGEQFAKEHGL-IFMEASAKT 152 (210)
T ss_pred EEECCcHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECccCccccCC----------CHHHHHHHHHHcCC-EEEEEeCCC
Confidence 9999999999998 78887776544 58999999999999776553 88899999999998 999999999
Q ss_pred CCCHHHHHHHHHHHHhCC
Q 028595 162 QQNVKAVFDAAIKVVIKP 179 (207)
Q Consensus 162 ~~~i~~~f~~i~~~~~~~ 179 (207)
+.|++++|+++++.+.+.
T Consensus 153 ~~~v~e~f~~l~~~~~~~ 170 (210)
T PLN03108 153 AQNVEEAFIKTAAKIYKK 170 (210)
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 999999999999888753
No 79
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=100.00 E-value=1.1e-32 Score=200.92 Aligned_cols=163 Identities=20% Similarity=0.187 Sum_probs=141.4
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCC-ccccCceeeeee-eEEEECCeEEEEEEEeCCCCccccccccceecCCcEEE
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSI-WDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 81 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~-~~~~~t~~~~~~-~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i 81 (207)
.+||+++|.++|| ||||+++|+++.+. ..|.||++..+. ..+.+++..+.+.+||++|++.+..++..++.++|+++
T Consensus 4 ~~kv~~vG~~~vG-KTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~l 82 (169)
T cd01892 4 VFLCFVLGAKGSG-KSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVAILLNDAELAACDVAC 82 (169)
T ss_pred EEEEEEECCCCCc-HHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcccccccchhhhhcCCEEE
Confidence 4799999999999 99999999999998 889999998874 46778888899999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCC
Q 028595 82 LAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT 161 (207)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 161 (207)
+|||++++++++.+ ..|+..+... +++|+++|+||+|+.+.... ...+++++++.++...++++||++
T Consensus 83 lv~d~~~~~s~~~~-~~~~~~~~~~-~~~p~iiv~NK~Dl~~~~~~----------~~~~~~~~~~~~~~~~~~~~Sa~~ 150 (169)
T cd01892 83 LVYDSSDPKSFSYC-AEVYKKYFML-GEIPCLFVAAKADLDEQQQR----------YEVQPDEFCRKLGLPPPLHFSSKL 150 (169)
T ss_pred EEEeCCCHHHHHHH-HHHHHHhccC-CCCeEEEEEEcccccccccc----------cccCHHHHHHHcCCCCCEEEEecc
Confidence 99999999999988 6777765332 47999999999999655432 345667888888875579999999
Q ss_pred CCCHHHHHHHHHHHHhCC
Q 028595 162 QQNVKAVFDAAIKVVIKP 179 (207)
Q Consensus 162 ~~~i~~~f~~i~~~~~~~ 179 (207)
+.|++++|+.+++.+..+
T Consensus 151 ~~~v~~lf~~l~~~~~~~ 168 (169)
T cd01892 151 GDSSNELFTKLATAAQYP 168 (169)
T ss_pred CccHHHHHHHHHHHhhCC
Confidence 999999999999988753
No 80
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=100.00 E-value=9.1e-33 Score=200.40 Aligned_cols=159 Identities=31% Similarity=0.455 Sum_probs=139.5
Q ss_pred eEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccc-cccccceecCCcEEEEEE
Q 028595 6 KLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY-NRLRPLSYRGADVFVLAF 84 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~-~~~~~~~~~~~d~~i~v~ 84 (207)
||+++|.+++| ||||+++++.+.+...+.||.+..+...+.+++..+.+.+||+||++.+ ......+++++|++|+||
T Consensus 1 ki~vvG~~~~G-Ktsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~ 79 (165)
T cd04146 1 KIAVLGASGVG-KSALVVRFLTKRFIGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVY 79 (165)
T ss_pred CEEEECCCCCc-HHHHHHHHHhCccccccCCChHHhceEEEEECCEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEE
Confidence 68999999999 9999999999988888889887777777788999999999999999863 455678899999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhcC---CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCC
Q 028595 85 SLVSRASYENVLKKWIPELQHYS---PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT 161 (207)
Q Consensus 85 d~~~~~s~~~~~~~~~~~i~~~~---~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 161 (207)
|+++++|++.+ ..|+..+.... +++|+++||||+|+.+.+. +..++++++++.++. +|+++||++
T Consensus 80 d~~~~~s~~~~-~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----------v~~~~~~~~~~~~~~-~~~e~Sa~~ 147 (165)
T cd04146 80 SITDRSSFDEI-SQLKQLIREIKKRDREIPVILVGNKADLLHYRQ----------VSTEEGEKLASELGC-LFFEVSAAE 147 (165)
T ss_pred ECCCHHHHHHH-HHHHHHHHHHhcCCCCCCEEEEEECCchHHhCc----------cCHHHHHHHHHHcCC-EEEEeCCCC
Confidence 99999999999 78888777643 4899999999999876554 378889999999997 999999999
Q ss_pred C-CCHHHHHHHHHHHHh
Q 028595 162 Q-QNVKAVFDAAIKVVI 177 (207)
Q Consensus 162 ~-~~i~~~f~~i~~~~~ 177 (207)
+ .|++++|+.+++.+.
T Consensus 148 ~~~~v~~~f~~l~~~~~ 164 (165)
T cd04146 148 DYDGVHSVFHELCREVR 164 (165)
T ss_pred CchhHHHHHHHHHHHHh
Confidence 9 599999999998764
No 81
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=100.00 E-value=1.7e-32 Score=200.01 Aligned_cols=160 Identities=25% Similarity=0.375 Sum_probs=143.1
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCcccc-ccccceecCCcEEE
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYN-RLRPLSYRGADVFV 81 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~-~~~~~~~~~~d~~i 81 (207)
..||+++|.+++| ||||+++++.+.+...+.+|.+..+ ...+.+++..+.+.+||++|++.++ .++..+++++|+++
T Consensus 2 ~~ki~vvG~~~vG-KTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i 80 (170)
T cd04115 2 IFKIIVIGDSNVG-KTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVV 80 (170)
T ss_pred ceEEEEECCCCCC-HHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEE
Confidence 4799999999999 9999999999998888889988766 4577888989999999999999887 57889999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhcC--CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEecc
Q 028595 82 LAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSS 159 (207)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa 159 (207)
+|||+++++++..+ ..|+..+.... .++|+++|+||+|+...+.+ ..++++++++.+++ +|+++||
T Consensus 81 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~~----------~~~~~~~~~~~~~~-~~~e~Sa 148 (170)
T cd04115 81 FVYDVTNMASFHSL-PSWIEECEQHSLPNEVPRILVGNKCDLREQIQV----------PTDLAQRFADAHSM-PLFETSA 148 (170)
T ss_pred EEEECCCHHHHHhH-HHHHHHHHHhcCCCCCCEEEEEECccchhhcCC----------CHHHHHHHHHHcCC-cEEEEec
Confidence 99999999999999 78998887654 57999999999999876653 78889999999887 9999999
Q ss_pred CC---CCCHHHHHHHHHHHH
Q 028595 160 KT---QQNVKAVFDAAIKVV 176 (207)
Q Consensus 160 ~~---~~~i~~~f~~i~~~~ 176 (207)
++ +.+++++|..+++.+
T Consensus 149 ~~~~~~~~i~~~f~~l~~~~ 168 (170)
T cd04115 149 KDPSENDHVEAIFMTLAHKL 168 (170)
T ss_pred cCCcCCCCHHHHHHHHHHHh
Confidence 99 899999999998765
No 82
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=100.00 E-value=2.9e-32 Score=198.41 Aligned_cols=161 Identities=29% Similarity=0.435 Sum_probs=144.4
Q ss_pred eeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEEE
Q 028595 5 AKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 84 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 84 (207)
+||+++|.+++| ||||+++|.++.+...+.||.+..+...+.+++..+.+.+|||||++.+..+++.+++.++++++||
T Consensus 2 ~ki~liG~~~~G-KTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~ 80 (168)
T cd04177 2 YKIVVLGAGGVG-KSALTVQFVQNVFIESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVY 80 (168)
T ss_pred eEEEEECCCCCC-HHHHHHHHHhCCCCcccCCcchheEEEEEEECCEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEE
Confidence 689999999999 9999999999999888999998887777888898999999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhcC--CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCCC
Q 028595 85 SLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQ 162 (207)
Q Consensus 85 d~~~~~s~~~~~~~~~~~i~~~~--~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~ 162 (207)
|++++++++.+ ..|...+.+.. ++.|+++++||.|+.+.+.. ..+++..+++.++..+++++||+++
T Consensus 81 ~~~~~~s~~~~-~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~~~----------~~~~~~~~~~~~~~~~~~~~SA~~~ 149 (168)
T cd04177 81 SVTSEASLNEL-GELREQVLRIKDSDNVPMVLVGNKADLEDDRQV----------SREDGVSLSQQWGNVPFYETSARKR 149 (168)
T ss_pred ECCCHHHHHHH-HHHHHHHHHhhCCCCCCEEEEEEChhccccCcc----------CHHHHHHHHHHcCCceEEEeeCCCC
Confidence 99999999999 77877776532 57999999999999766543 7778888989888448999999999
Q ss_pred CCHHHHHHHHHHHHh
Q 028595 163 QNVKAVFDAAIKVVI 177 (207)
Q Consensus 163 ~~i~~~f~~i~~~~~ 177 (207)
.|++++|++++..++
T Consensus 150 ~~i~~~f~~i~~~~~ 164 (168)
T cd04177 150 TNVDEVFIDLVRQII 164 (168)
T ss_pred CCHHHHHHHHHHHHh
Confidence 999999999998765
No 83
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=100.00 E-value=1.5e-32 Score=208.00 Aligned_cols=161 Identities=20% Similarity=0.266 Sum_probs=138.2
Q ss_pred eeEEEEecccccceeeeeeeccCCCCC-ccccCcee-eeeeeEEEECCeEEEEEEEeCCCCccccccccceec-CCcEEE
Q 028595 5 AKLACLFATQVTSFLLYVLSVSGRSSI-WDYIPTVF-DNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYR-GADVFV 81 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~~~~~-~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~-~~d~~i 81 (207)
+||+++|.++|| ||||+++|..+.+. ..+.++.+ +.+...+.+++..+.+.+|||+|++ ......++. ++|+++
T Consensus 1 ~KI~lvG~~gvG-KTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~--~~~~~~~~~~~ad~ii 77 (221)
T cd04148 1 YRVVMLGSPGVG-KSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE--MWTEDSCMQYQGDAFV 77 (221)
T ss_pred CEEEEECCCCCc-HHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc--hHHHhHHhhcCCCEEE
Confidence 489999999999 99999999988876 77778876 4456778888999999999999998 233455666 899999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhcC--CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEecc
Q 028595 82 LAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSS 159 (207)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa 159 (207)
+|||++++++++.+ ..|+..+.... .++|+++|+||+|+.+.+.+ ..+++++++..+++ +|+++||
T Consensus 78 lV~d~td~~S~~~~-~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~~v----------~~~~~~~~a~~~~~-~~~e~SA 145 (221)
T cd04148 78 VVYSVTDRSSFERA-SELRIQLRRNRQLEDRPIILVGNKSDLARSREV----------SVQEGRACAVVFDC-KFIETSA 145 (221)
T ss_pred EEEECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEEChhcccccee----------cHHHHHHHHHHcCC-eEEEecC
Confidence 99999999999998 78888876654 57999999999999776653 77888899998888 8999999
Q ss_pred CCCCCHHHHHHHHHHHHhCCC
Q 028595 160 KTQQNVKAVFDAAIKVVIKPP 180 (207)
Q Consensus 160 ~~~~~i~~~f~~i~~~~~~~~ 180 (207)
+++.|++++|+++++.+...+
T Consensus 146 ~~~~gv~~l~~~l~~~~~~~~ 166 (221)
T cd04148 146 GLQHNVDELLEGIVRQIRLRR 166 (221)
T ss_pred CCCCCHHHHHHHHHHHHHhhh
Confidence 999999999999999987443
No 84
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=100.00 E-value=2.5e-32 Score=197.74 Aligned_cols=159 Identities=24% Similarity=0.371 Sum_probs=139.3
Q ss_pred eeEEEEecccccceeeeeeeccCC--CCCccccCceeeee-eeEEEEC-CeEEEEEEEeCCCCccccccccceecCCcEE
Q 028595 5 AKLACLFATQVTSFLLYVLSVSGR--SSIWDYIPTVFDNF-SANVVAE-GTTVNLGLWDTAGQEDYNRLRPLSYRGADVF 80 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~~--~~~~~~~~t~~~~~-~~~~~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ 80 (207)
.||+++|.+++| ||||++++..+ .+...+.+|.+.++ ...+.++ +..+.+.+|||+|++.+..++..++.++|++
T Consensus 1 ~ki~vvG~~~~G-Ktsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i 79 (164)
T cd04101 1 LRCAVVGDPAVG-KTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYSDMVSNYWESPSVF 79 (164)
T ss_pred CEEEEECCCCCC-HHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHHHHHHHHHHhCCCCEE
Confidence 489999999999 99999999865 67788999998776 3455554 6789999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccC
Q 028595 81 VLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK 160 (207)
Q Consensus 81 i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 160 (207)
++|||+++++++..+ ..|+..+....++.|+++|+||+|+.+..++ ...+++.++..+++ +++++||+
T Consensus 80 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~----------~~~~~~~~~~~~~~-~~~~~Sa~ 147 (164)
T cd04101 80 ILVYDVSNKASFENC-SRWVNKVRTASKHMPGVLVGNKMDLADKAEV----------TDAQAQAFAQANQL-KFFKTSAL 147 (164)
T ss_pred EEEEECcCHHHHHHH-HHHHHHHHHhCCCCCEEEEEECcccccccCC----------CHHHHHHHHHHcCC-eEEEEeCC
Confidence 999999999999988 7899888776678999999999999766553 66777888888887 89999999
Q ss_pred CCCCHHHHHHHHHHHH
Q 028595 161 TQQNVKAVFDAAIKVV 176 (207)
Q Consensus 161 ~~~~i~~~f~~i~~~~ 176 (207)
++.|++++|+.+++.+
T Consensus 148 ~~~gi~~l~~~l~~~~ 163 (164)
T cd04101 148 RGVGYEEPFESLARAF 163 (164)
T ss_pred CCCChHHHHHHHHHHh
Confidence 9999999999998865
No 85
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.5e-33 Score=189.00 Aligned_cols=164 Identities=24% Similarity=0.435 Sum_probs=153.0
Q ss_pred cceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEE
Q 028595 3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 81 (207)
Q Consensus 3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i 81 (207)
..+|.+++|+-+|| ||+|+++|...+|..+...|+|.+| ...+.+.|+.++++||||+||++|+...+.|++++-+.+
T Consensus 10 yifkyiiigdmgvg-kscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyrgaagal 88 (215)
T KOG0097|consen 10 YIFKYIIIGDMGVG-KSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGAL 88 (215)
T ss_pred heEEEEEEcccccc-HHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhcccccee
Confidence 46899999999999 9999999999999999999999999 557888999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccC
Q 028595 82 LAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK 160 (207)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 160 (207)
.|||++.+.+++++ ..|+....... |+..++++|||.|+...+++ +.+++++|+++.|+ .|.|+||+
T Consensus 89 mvyditrrstynhl-sswl~dar~ltnpnt~i~lignkadle~qrdv----------~yeeak~faeengl-~fle~sak 156 (215)
T KOG0097|consen 89 MVYDITRRSTYNHL-SSWLTDARNLTNPNTVIFLIGNKADLESQRDV----------TYEEAKEFAEENGL-MFLEASAK 156 (215)
T ss_pred EEEEehhhhhhhhH-HHHHhhhhccCCCceEEEEecchhhhhhcccC----------cHHHHHHHHhhcCe-EEEEeccc
Confidence 99999999999999 78988877665 78889999999999988885 99999999999998 99999999
Q ss_pred CCCCHHHHHHHHHHHHhCC
Q 028595 161 TQQNVKAVFDAAIKVVIKP 179 (207)
Q Consensus 161 ~~~~i~~~f~~i~~~~~~~ 179 (207)
+|.|+++.|-+...++.+.
T Consensus 157 tg~nvedafle~akkiyqn 175 (215)
T KOG0097|consen 157 TGQNVEDAFLETAKKIYQN 175 (215)
T ss_pred ccCcHHHHHHHHHHHHHHh
Confidence 9999999999999888753
No 86
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=100.00 E-value=3.9e-32 Score=202.45 Aligned_cols=164 Identities=22% Similarity=0.290 Sum_probs=136.3
Q ss_pred eeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCcccccc--------ccceec
Q 028595 5 AKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRL--------RPLSYR 75 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~--------~~~~~~ 75 (207)
.||+++|.++|| ||||+++|.++.+...+.||.+..+ ...+.+++..+.+.+|||||.+.+... ...+++
T Consensus 1 ~kI~ivG~~~vG-KTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~ 79 (198)
T cd04142 1 VRVAVLGAPGVG-KTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLR 79 (198)
T ss_pred CEEEEECCCCCc-HHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCCccchhHHHHHHHhhhc
Confidence 489999999999 9999999999999888999987554 456778898999999999997654321 234578
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHhhc----CCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHH-HhC
Q 028595 76 GADVFVLAFSLVSRASYENVLKKWIPELQHY----SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRK-QIG 150 (207)
Q Consensus 76 ~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~----~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~ 150 (207)
++|++|+|||+++++|++.+ ..|+..+... .+++|+++||||+|+.+.+.+ ..++++.++. .++
T Consensus 80 ~ad~iilv~D~~~~~S~~~~-~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~~~~----------~~~~~~~~~~~~~~ 148 (198)
T cd04142 80 NSRAFILVYDICSPDSFHYV-KLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFA----------PRHVLSVLVRKSWK 148 (198)
T ss_pred cCCEEEEEEECCCHHHHHHH-HHHHHHHHHhcccCCCCCCEEEEEECccccccccc----------cHHHHHHHHHHhcC
Confidence 99999999999999999999 7887777554 257999999999999765543 6667777765 456
Q ss_pred CcEEEEeccCCCCCHHHHHHHHHHHHhCCCc
Q 028595 151 ASYYIECSSKTQQNVKAVFDAAIKVVIKPPQ 181 (207)
Q Consensus 151 ~~~~~e~Sa~~~~~i~~~f~~i~~~~~~~~~ 181 (207)
+ +|+++||++|.|++++|+.+++.+..+..
T Consensus 149 ~-~~~e~Sak~g~~v~~lf~~i~~~~~~~~~ 178 (198)
T cd04142 149 C-GYLECSAKYNWHILLLFKELLISATTRGR 178 (198)
T ss_pred C-cEEEecCCCCCCHHHHHHHHHHHhhccCC
Confidence 6 99999999999999999999999886644
No 87
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=100.00 E-value=4.2e-32 Score=196.34 Aligned_cols=161 Identities=29% Similarity=0.522 Sum_probs=144.6
Q ss_pred eeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEE
Q 028595 5 AKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA 83 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v 83 (207)
+||+++|.+++| ||||++++.++.+...+.++.+.++ ...+..++..+.+.+||+||++.+..++..+++++|++++|
T Consensus 1 ~kv~v~G~~~~G-KTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv 79 (164)
T smart00175 1 FKIILIGDSGVG-KSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLV 79 (164)
T ss_pred CEEEEECCCCCC-HHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEE
Confidence 589999999999 9999999999998888888988776 44677888889999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCCC
Q 028595 84 FSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQ 162 (207)
Q Consensus 84 ~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~ 162 (207)
||++++++++.+ ..|+..+.... +++|+++++||+|+.....+ ..+.++++++.+++ +++++||.++
T Consensus 80 ~d~~~~~s~~~~-~~~l~~~~~~~~~~~pivvv~nK~D~~~~~~~----------~~~~~~~~~~~~~~-~~~e~Sa~~~ 147 (164)
T smart00175 80 YDITNRESFENL-KNWLKELREYADPNVVIMLVGNKSDLEDQRQV----------SREEAEAFAEEHGL-PFFETSAKTN 147 (164)
T ss_pred EECCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEEchhcccccCC----------CHHHHHHHHHHcCC-eEEEEeCCCC
Confidence 999999999998 67998887766 68999999999998765543 77889999999887 8999999999
Q ss_pred CCHHHHHHHHHHHHhC
Q 028595 163 QNVKAVFDAAIKVVIK 178 (207)
Q Consensus 163 ~~i~~~f~~i~~~~~~ 178 (207)
.|++++|+++++.+.+
T Consensus 148 ~~i~~l~~~i~~~~~~ 163 (164)
T smart00175 148 TNVEEAFEELAREILK 163 (164)
T ss_pred CCHHHHHHHHHHHHhh
Confidence 9999999999998754
No 88
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=100.00 E-value=9e-32 Score=194.57 Aligned_cols=160 Identities=33% Similarity=0.509 Sum_probs=143.9
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEE
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 82 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~ 82 (207)
.+||+++|.+++| ||||+++++++++...+.+|.+..+ ...+.+++..+.+.+||+||++++...+..+++++|++++
T Consensus 1 ~~ki~v~G~~~~G-KSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~ 79 (163)
T cd01860 1 QFKLVLLGDSSVG-KSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIV 79 (163)
T ss_pred CeEEEEECCCCCC-HHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCchHHHHHHHHHHhccCCEEEE
Confidence 3699999999999 9999999999998887889988776 5678889999999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCC
Q 028595 83 AFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT 161 (207)
Q Consensus 83 v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 161 (207)
|||+++++++..+ ..|+..+.... +++|+++++||+|+.+.... ..+++..+++.++. +++++||++
T Consensus 80 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~iivv~nK~D~~~~~~~----------~~~~~~~~~~~~~~-~~~~~Sa~~ 147 (163)
T cd01860 80 VYDITSEESFEKA-KSWVKELQRNASPNIIIALVGNKADLESKRQV----------STEEAQEYADENGL-LFFETSAKT 147 (163)
T ss_pred EEECcCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECccccccCcC----------CHHHHHHHHHHcCC-EEEEEECCC
Confidence 9999999999999 78888887665 67999999999998765443 77888999999986 899999999
Q ss_pred CCCHHHHHHHHHHHH
Q 028595 162 QQNVKAVFDAAIKVV 176 (207)
Q Consensus 162 ~~~i~~~f~~i~~~~ 176 (207)
|.|++++|+++++.+
T Consensus 148 ~~~v~~l~~~l~~~l 162 (163)
T cd01860 148 GENVNELFTEIAKKL 162 (163)
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999999876
No 89
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=100.00 E-value=1.1e-31 Score=193.73 Aligned_cols=158 Identities=33% Similarity=0.482 Sum_probs=140.3
Q ss_pred eeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEE
Q 028595 5 AKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA 83 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v 83 (207)
.||+++|.+++| ||||++++.+.++...+.|+.+.++ ...+.+++..+.+.+||+||++++..++..+++++|++++|
T Consensus 1 ~ki~liG~~~~G-KSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v 79 (161)
T cd01861 1 HKLVFLGDQSVG-KTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVV 79 (161)
T ss_pred CEEEEECCCCCC-HHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEE
Confidence 489999999999 9999999999998888888888665 55777888889999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCCC
Q 028595 84 FSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQ 162 (207)
Q Consensus 84 ~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~ 162 (207)
||+++++++..+ ..|+..+.... .+.|+++++||+|+.+.+.. ..++...+++..+. +++++||+++
T Consensus 80 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~~iilv~nK~D~~~~~~~----------~~~~~~~~~~~~~~-~~~~~Sa~~~ 147 (161)
T cd01861 80 YDITNRQSFDNT-DKWIDDVRDERGNDVIIVLVGNKTDLSDKRQV----------STEEGEKKAKELNA-MFIETSAKAG 147 (161)
T ss_pred EECcCHHHHHHH-HHHHHHHHHhCCCCCEEEEEEEChhccccCcc----------CHHHHHHHHHHhCC-EEEEEeCCCC
Confidence 999999999999 78888876544 36999999999999655443 77888999988887 8999999999
Q ss_pred CCHHHHHHHHHHH
Q 028595 163 QNVKAVFDAAIKV 175 (207)
Q Consensus 163 ~~i~~~f~~i~~~ 175 (207)
.|++++|+++.+.
T Consensus 148 ~~v~~l~~~i~~~ 160 (161)
T cd01861 148 HNVKELFRKIASA 160 (161)
T ss_pred CCHHHHHHHHHHh
Confidence 9999999999875
No 90
>PLN03118 Rab family protein; Provisional
Probab=100.00 E-value=1.6e-31 Score=201.31 Aligned_cols=165 Identities=28% Similarity=0.492 Sum_probs=143.2
Q ss_pred cceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEE
Q 028595 3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 81 (207)
Q Consensus 3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i 81 (207)
..+||+++|.+++| ||||+++|.++.+ ..+.||.+.++ ...+.+++..+.+.+|||||++.+..++..+++++|+++
T Consensus 13 ~~~kv~ivG~~~vG-KTsli~~l~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~v 90 (211)
T PLN03118 13 LSFKILLIGDSGVG-KSSLLVSFISSSV-EDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGII 90 (211)
T ss_pred cceEEEEECcCCCC-HHHHHHHHHhCCC-CCcCCCceeEEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEE
Confidence 46799999999999 9999999998876 46778888776 446778888899999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhcC--CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEecc
Q 028595 82 LAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSS 159 (207)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa 159 (207)
+|||++++++++.+...|...+.... .+.|+++|+||+|+...+.+ ..+++..++..+++ +|+++||
T Consensus 91 lv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~i----------~~~~~~~~~~~~~~-~~~e~SA 159 (211)
T PLN03118 91 LVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESERDV----------SREEGMALAKEHGC-LFLECSA 159 (211)
T ss_pred EEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccCcc----------CHHHHHHHHHHcCC-EEEEEeC
Confidence 99999999999999556777766543 46899999999999766543 77888889998887 8999999
Q ss_pred CCCCCHHHHHHHHHHHHhCCC
Q 028595 160 KTQQNVKAVFDAAIKVVIKPP 180 (207)
Q Consensus 160 ~~~~~i~~~f~~i~~~~~~~~ 180 (207)
+++.|++++|+++.+.+...+
T Consensus 160 k~~~~v~~l~~~l~~~~~~~~ 180 (211)
T PLN03118 160 KTRENVEQCFEELALKIMEVP 180 (211)
T ss_pred CCCCCHHHHHHHHHHHHHhhh
Confidence 999999999999999887543
No 91
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.98 E-value=3.1e-31 Score=193.14 Aligned_cols=169 Identities=51% Similarity=0.872 Sum_probs=145.8
Q ss_pred eeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEEE
Q 028595 5 AKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 84 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 84 (207)
+||+++|.+++| ||||+++|+++.+...+.|+....+...+..++..+.+.+||+||++.+......+++.+|++++||
T Consensus 1 iki~i~G~~~~G-KSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (171)
T cd00157 1 IKIVVVGDGAVG-KTCLLISYTTGKFPTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICF 79 (171)
T ss_pred CEEEEECCCCCC-HHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCcccccccchhhcCCCCEEEEEE
Confidence 589999999999 9999999999998888889988878777888899999999999999998888888899999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccC-CCCCcccCHHHHHHHHHHhCCcEEEEeccCCCC
Q 028595 85 SLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLAD-HPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ 163 (207)
Q Consensus 85 d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~ 163 (207)
|+++++++......|+..+....++.|+++|+||+|+.+....... ......+..+++..++..++..+|+++||++|.
T Consensus 80 d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~ 159 (171)
T cd00157 80 SVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGYMECSALTQE 159 (171)
T ss_pred ECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCeEEEEeecCCCC
Confidence 9999999999877898888877778999999999999766532000 001122467888999999997799999999999
Q ss_pred CHHHHHHHHHH
Q 028595 164 NVKAVFDAAIK 174 (207)
Q Consensus 164 ~i~~~f~~i~~ 174 (207)
|++++|+++++
T Consensus 160 gi~~l~~~i~~ 170 (171)
T cd00157 160 GVKEVFEEAIR 170 (171)
T ss_pred CHHHHHHHHhh
Confidence 99999999875
No 92
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.98 E-value=3.5e-31 Score=193.07 Aligned_cols=164 Identities=27% Similarity=0.446 Sum_probs=142.7
Q ss_pred eeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEE
Q 028595 5 AKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA 83 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v 83 (207)
+||+++|.+++| ||||++++.++.+...+.+|.+.++ ...+.+++..+.+.+||+||++.+..++..+++++|++|+|
T Consensus 1 ~ki~viG~~~~G-KSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v 79 (172)
T cd01862 1 LKVIILGDSGVG-KTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLV 79 (172)
T ss_pred CEEEEECCCCCC-HHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEE
Confidence 489999999999 9999999999998888888988666 45678888899999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcC-----CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEec
Q 028595 84 FSLVSRASYENVLKKWIPELQHYS-----PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECS 158 (207)
Q Consensus 84 ~d~~~~~s~~~~~~~~~~~i~~~~-----~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~S 158 (207)
||++++++++.+ ..|...+.... .++|+++|+||+|+...+. +..++.+.+++..+..+++++|
T Consensus 80 ~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~~~~~~~S 148 (172)
T cd01862 80 YDVTNPKSFESL-DSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQ----------VSTKKAQQWCQSNGNIPYFETS 148 (172)
T ss_pred EECCCHHHHHHH-HHHHHHHHHhcCccCCCCceEEEEEECcccccccc----------cCHHHHHHHHHHcCCceEEEEE
Confidence 999999999888 67776654433 2799999999999975443 2678888899888855999999
Q ss_pred cCCCCCHHHHHHHHHHHHhCCC
Q 028595 159 SKTQQNVKAVFDAAIKVVIKPP 180 (207)
Q Consensus 159 a~~~~~i~~~f~~i~~~~~~~~ 180 (207)
|++|.|++++|+++++.+.+..
T Consensus 149 a~~~~gv~~l~~~i~~~~~~~~ 170 (172)
T cd01862 149 AKEAINVEQAFETIARKALEQE 170 (172)
T ss_pred CCCCCCHHHHHHHHHHHHHhcc
Confidence 9999999999999999887763
No 93
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.97 E-value=5.2e-31 Score=190.28 Aligned_cols=157 Identities=28% Similarity=0.500 Sum_probs=139.6
Q ss_pred eeEEEEecccccceeeeeeeccCCCCCccccCceeeeee-eEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEE
Q 028595 5 AKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA 83 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v 83 (207)
+||+++|.+++| ||||+++|.++.+...+.|+.+.++. ..+.+++..+.+.+||+||++.+..++..+++++|++++|
T Consensus 1 ~ki~v~G~~~~G-KSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v 79 (161)
T cd01863 1 LKILLIGDSGVG-KSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILV 79 (161)
T ss_pred CEEEEECCCCCC-HHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEE
Confidence 589999999999 99999999999887778899887764 4566788889999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcC--CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCC
Q 028595 84 FSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT 161 (207)
Q Consensus 84 ~d~~~~~s~~~~~~~~~~~i~~~~--~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 161 (207)
||++++++++.+ ..|+..+.... ++.|+++|+||+|+.... +..++...+++..++ +++++||++
T Consensus 80 ~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~~-----------~~~~~~~~~~~~~~~-~~~~~Sa~~ 146 (161)
T cd01863 80 YDVTRRDTFTNL-ETWLNELETYSTNNDIVKMLVGNKIDKENRE-----------VTREEGLKFARKHNM-LFIETSAKT 146 (161)
T ss_pred EECCCHHHHHhH-HHHHHHHHHhCCCCCCcEEEEEECCcccccc-----------cCHHHHHHHHHHcCC-EEEEEecCC
Confidence 999999999998 67988887664 589999999999997443 267788999999887 899999999
Q ss_pred CCCHHHHHHHHHHH
Q 028595 162 QQNVKAVFDAAIKV 175 (207)
Q Consensus 162 ~~~i~~~f~~i~~~ 175 (207)
|.|++++|+++++.
T Consensus 147 ~~gi~~~~~~~~~~ 160 (161)
T cd01863 147 RDGVQQAFEELVEK 160 (161)
T ss_pred CCCHHHHHHHHHHh
Confidence 99999999999875
No 94
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.97 E-value=1.1e-30 Score=188.46 Aligned_cols=159 Identities=31% Similarity=0.486 Sum_probs=139.8
Q ss_pred eeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEE
Q 028595 5 AKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA 83 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v 83 (207)
+||+++|.+++| ||||++++.++.+...+.++.+..+ ...+...+..+.+.+||++|++.+..++..+++++|++++|
T Consensus 1 ~ki~i~G~~~~G-KStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v 79 (162)
T cd04123 1 FKVVLLGEGRVG-KTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILV 79 (162)
T ss_pred CEEEEECCCCCC-HHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCchHHHHHhhHHHhccCCEEEEE
Confidence 489999999999 9999999999988777777776665 44677778888999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCCC
Q 028595 84 FSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQ 162 (207)
Q Consensus 84 ~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~ 162 (207)
||++++++++.+ ..|+..+.... .++|+++++||+|+...... ..++++++++.++. +++++||+++
T Consensus 80 ~d~~~~~s~~~~-~~~~~~i~~~~~~~~piiiv~nK~D~~~~~~~----------~~~~~~~~~~~~~~-~~~~~s~~~~ 147 (162)
T cd04123 80 YDITDADSFQKV-KKWIKELKQMRGNNISLVIVGNKIDLERQRVV----------SKSEAEEYAKSVGA-KHFETSAKTG 147 (162)
T ss_pred EECCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECcccccccCC----------CHHHHHHHHHHcCC-EEEEEeCCCC
Confidence 999999999998 78888887665 37999999999999765543 67788888888887 8999999999
Q ss_pred CCHHHHHHHHHHHH
Q 028595 163 QNVKAVFDAAIKVV 176 (207)
Q Consensus 163 ~~i~~~f~~i~~~~ 176 (207)
+|++++|+++.+.+
T Consensus 148 ~gi~~~~~~l~~~~ 161 (162)
T cd04123 148 KGIEELFLSLAKRM 161 (162)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999998765
No 95
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.97 E-value=1.2e-30 Score=188.67 Aligned_cols=160 Identities=31% Similarity=0.459 Sum_probs=142.5
Q ss_pred eeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEEE
Q 028595 5 AKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 84 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 84 (207)
+||+++|.+++| ||||+++++.+.+...+.++.++.+......++..+.+.+||+||++.+..++..+++++|++++||
T Consensus 1 ~ki~~~G~~~~G-KTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~ 79 (164)
T cd04139 1 YKVIVVGAGGVG-KSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVF 79 (164)
T ss_pred CEEEEECCCCCC-HHHHHHHHHhCCCccccCCcchhhEEEEEEECCEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEE
Confidence 589999999999 9999999999999888999998888778888989999999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhcC--CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCCC
Q 028595 85 SLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQ 162 (207)
Q Consensus 85 d~~~~~s~~~~~~~~~~~i~~~~--~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~ 162 (207)
|++++.++..+ ..|...+.... .++|+++|+||+|+.+.+.. ...+...+++.++. +++++||+++
T Consensus 80 d~~~~~s~~~~-~~~~~~~~~~~~~~~~piiiv~NK~D~~~~~~~----------~~~~~~~~~~~~~~-~~~~~Sa~~~ 147 (164)
T cd04139 80 SITDMESFTAT-AEFREQILRVKDDDNVPLLLVGNKCDLEDKRQV----------SSEEAANLARQWGV-PYVETSAKTR 147 (164)
T ss_pred ECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEEcccccccccc----------CHHHHHHHHHHhCC-eEEEeeCCCC
Confidence 99999999998 66766665542 57999999999999764332 67778888888887 9999999999
Q ss_pred CCHHHHHHHHHHHHh
Q 028595 163 QNVKAVFDAAIKVVI 177 (207)
Q Consensus 163 ~~i~~~f~~i~~~~~ 177 (207)
.|++++|+++++.+.
T Consensus 148 ~gi~~l~~~l~~~~~ 162 (164)
T cd04139 148 QNVEKAFYDLVREIR 162 (164)
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999998775
No 96
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.97 E-value=1.1e-30 Score=192.09 Aligned_cols=176 Identities=28% Similarity=0.437 Sum_probs=148.2
Q ss_pred eeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEEE
Q 028595 5 AKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 84 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 84 (207)
.||+++|.+++| ||||++++.++.+...+.||.+..+...+.+++..+.+.+||+||++++..++..++..++++++||
T Consensus 2 ~kv~l~G~~g~G-KTtl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~ 80 (180)
T cd04137 2 RKIAVLGSRSVG-KSSLTVQFVEGHFVESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVY 80 (180)
T ss_pred eEEEEECCCCCC-HHHHHHHHHhCCCccccCcchhhhEEEEEEECCEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEE
Confidence 689999999999 9999999999998888889888777777888888899999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhc-C-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCCC
Q 028595 85 SLVSRASYENVLKKWIPELQHY-S-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQ 162 (207)
Q Consensus 85 d~~~~~s~~~~~~~~~~~i~~~-~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~ 162 (207)
|+++.++++.+ ..|...+... . .+.|+++++||+|+...+.+ ..++...+++.++. +++++||+++
T Consensus 81 d~~~~~~~~~~-~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~----------~~~~~~~~~~~~~~-~~~~~Sa~~~ 148 (180)
T cd04137 81 SVTSRKSFEVV-KVIYDKILDMLGKESVPIVLVGNKSDLHTQRQV----------STEEGKELAESWGA-AFLESSAREN 148 (180)
T ss_pred ECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEEchhhhhcCcc----------CHHHHHHHHHHcCC-eEEEEeCCCC
Confidence 99999999999 5554544432 2 47899999999999765543 66678888888887 8999999999
Q ss_pred CCHHHHHHHHHHHHhCCCcchhhhcccCCCeEE
Q 028595 163 QNVKAVFDAAIKVVIKPPQKQKEKKKKQRGCLL 195 (207)
Q Consensus 163 ~~i~~~f~~i~~~~~~~~~~~~~~~~~~~~c~~ 195 (207)
.|+.++|.++.+.+...+... ....+.+|.+
T Consensus 149 ~gv~~l~~~l~~~~~~~~~~~--~~~~~~~~~~ 179 (180)
T cd04137 149 ENVEEAFELLIEEIEKVENPL--DPGQKKKCSI 179 (180)
T ss_pred CCHHHHHHHHHHHHHHhcCCC--CCCCCCCcee
Confidence 999999999999887665433 2234567765
No 97
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.97 E-value=3.3e-30 Score=187.18 Aligned_cols=164 Identities=21% Similarity=0.275 Sum_probs=132.2
Q ss_pred eeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEEE
Q 028595 5 AKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 84 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 84 (207)
.||+++|..++| ||||+++|.++.+...+.++ ...+.....+++..+.+.+|||+|++.+...+..+++++|++++||
T Consensus 1 ~kv~ivG~~~vG-KTsl~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~ 78 (166)
T cd01893 1 VRIVLIGDEGVG-KSSLIMSLVSEEFPENVPRV-LPEITIPADVTPERVPTTIVDTSSRPQDRANLAAEIRKANVICLVY 78 (166)
T ss_pred CEEEEECCCCCC-HHHHHHHHHhCcCCccCCCc-ccceEeeeeecCCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEE
Confidence 489999999999 99999999999987665443 3444555566778899999999999988887788889999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhC-CcEEEEeccCCCC
Q 028595 85 SLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG-ASYYIECSSKTQQ 163 (207)
Q Consensus 85 d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~e~Sa~~~~ 163 (207)
|++++++++.+...|...+....++.|+++|+||+|+.+.... ....+++..+++.++ ..+++++||+++.
T Consensus 79 d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~~~--------~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~ 150 (166)
T cd01893 79 SVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSSQ--------AGLEEEMLPIMNEFREIETCVECSAKTLI 150 (166)
T ss_pred ECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccccch--------hHHHHHHHHHHHHHhcccEEEEecccccc
Confidence 9999999999855788888776678999999999999765431 001234444555543 2379999999999
Q ss_pred CHHHHHHHHHHHHhC
Q 028595 164 NVKAVFDAAIKVVIK 178 (207)
Q Consensus 164 ~i~~~f~~i~~~~~~ 178 (207)
|++++|+.+.+.+..
T Consensus 151 ~v~~lf~~~~~~~~~ 165 (166)
T cd01893 151 NVSEVFYYAQKAVLH 165 (166)
T ss_pred CHHHHHHHHHHHhcC
Confidence 999999999988765
No 98
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.97 E-value=1.3e-30 Score=191.86 Aligned_cols=156 Identities=13% Similarity=0.163 Sum_probs=122.8
Q ss_pred cceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEE
Q 028595 3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 82 (207)
Q Consensus 3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~ 82 (207)
...||+++|.+++| ||||++++..+.+. .+.||++..+. .+. ...+.+.+||+||++.++.++..+++++|++|+
T Consensus 16 ~~~ki~ivG~~~~G-KTsl~~~l~~~~~~-~~~pt~g~~~~-~~~--~~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~ 90 (181)
T PLN00223 16 KEMRILMVGLDAAG-KTTILYKLKLGEIV-TTIPTIGFNVE-TVE--YKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIF 90 (181)
T ss_pred CccEEEEECCCCCC-HHHHHHHHccCCCc-cccCCcceeEE-EEE--ECCEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence 35799999999999 99999999988775 46788876543 233 345889999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCc-------EE
Q 028595 83 AFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGAS-------YY 154 (207)
Q Consensus 83 v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-------~~ 154 (207)
|||+++++++.++...+...+.+.. +++|++|++||+|+.... ..+ ++.+.+++. .+
T Consensus 91 V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~------------~~~---~~~~~l~l~~~~~~~~~~ 155 (181)
T PLN00223 91 VVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM------------NAA---EITDKLGLHSLRQRHWYI 155 (181)
T ss_pred EEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCC------------CHH---HHHHHhCccccCCCceEE
Confidence 9999999999988444444443322 589999999999986542 323 333334432 35
Q ss_pred EEeccCCCCCHHHHHHHHHHHHhC
Q 028595 155 IECSSKTQQNVKAVFDAAIKVVIK 178 (207)
Q Consensus 155 ~e~Sa~~~~~i~~~f~~i~~~~~~ 178 (207)
+++||++|+|++++|++|++.+..
T Consensus 156 ~~~Sa~~g~gv~e~~~~l~~~~~~ 179 (181)
T PLN00223 156 QSTCATSGEGLYEGLDWLSNNIAN 179 (181)
T ss_pred EeccCCCCCCHHHHHHHHHHHHhh
Confidence 589999999999999999988764
No 99
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.97 E-value=7.9e-30 Score=185.51 Aligned_cols=161 Identities=26% Similarity=0.432 Sum_probs=140.2
Q ss_pred cceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEE
Q 028595 3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 81 (207)
Q Consensus 3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i 81 (207)
...||+++|.+++| ||||++++..+.+...+.+|.+..+ ...+.+++..+.+.+||++|++.+...+..+++.+|+++
T Consensus 6 ~~~~v~v~G~~~~G-KSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i 84 (169)
T cd04114 6 FLFKIVLIGNAGVG-KTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALI 84 (169)
T ss_pred ceeEEEEECCCCCC-HHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhcCCCEEE
Confidence 36899999999999 9999999998888777788887655 446788888899999999999999998899999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccC
Q 028595 82 LAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK 160 (207)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 160 (207)
+|||+++.++++.+ ..|+..+.... .++|+++++||+|+.+.+++ ..+..+.+.+.... +++++||+
T Consensus 85 ~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~~i----------~~~~~~~~~~~~~~-~~~~~Sa~ 152 (169)
T cd04114 85 LTYDITCEESFRCL-PEWLREIEQYANNKVITILVGNKIDLAERREV----------SQQRAEEFSDAQDM-YYLETSAK 152 (169)
T ss_pred EEEECcCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECccccccccc----------CHHHHHHHHHHcCC-eEEEeeCC
Confidence 99999999999988 78888887655 47999999999999766553 66677788777775 89999999
Q ss_pred CCCCHHHHHHHHHHHH
Q 028595 161 TQQNVKAVFDAAIKVV 176 (207)
Q Consensus 161 ~~~~i~~~f~~i~~~~ 176 (207)
+|.|++++|+++.+.+
T Consensus 153 ~~~gv~~l~~~i~~~~ 168 (169)
T cd04114 153 ESDNVEKLFLDLACRL 168 (169)
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999999998765
No 100
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.97 E-value=6.4e-30 Score=190.82 Aligned_cols=161 Identities=24% Similarity=0.324 Sum_probs=136.4
Q ss_pred eEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEEEe
Q 028595 6 KLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS 85 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 85 (207)
||+++|.+++| ||||+++|+++.+...+.+|....+...+.+++..+.+.+||++|++.+..++..++.++|++|+|||
T Consensus 1 kv~vvG~~~vG-KTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d 79 (198)
T cd04147 1 RLVFMGAAGVG-KTALIQRFLYDTFEPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYA 79 (198)
T ss_pred CEEEECCCCCC-HHHHHHHHHhCCCCccCCCchhhheeEEEEECCEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEE
Confidence 78999999999 99999999999988888888876666678888888999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhcC--CCCcEEEEeeCCCcccC-cccccCCCCCcccCHHHHHHHHH-HhCCcEEEEeccCC
Q 028595 86 LVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLRED-KHYLADHPGLVPVTTAQGEELRK-QIGASYYIECSSKT 161 (207)
Q Consensus 86 ~~~~~s~~~~~~~~~~~i~~~~--~~~piivv~nK~D~~~~-~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~e~Sa~~ 161 (207)
++++++++.+ ..|+..+.... .++|+++|+||+|+.+. .. +..+++.+... ..+. +++++||++
T Consensus 80 ~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~----------v~~~~~~~~~~~~~~~-~~~~~Sa~~ 147 (198)
T cd04147 80 VDDPESFEEV-ERLREEILEVKEDKFVPIVVVGNKADSLEEERQ----------VPAKDALSTVELDWNC-GFVETSAKD 147 (198)
T ss_pred CCCHHHHHHH-HHHHHHHHHhcCCCCCcEEEEEEcccccccccc----------ccHHHHHHHHHhhcCC-cEEEecCCC
Confidence 9999999999 78877766544 47999999999998653 32 24445544443 3454 899999999
Q ss_pred CCCHHHHHHHHHHHHhCC
Q 028595 162 QQNVKAVFDAAIKVVIKP 179 (207)
Q Consensus 162 ~~~i~~~f~~i~~~~~~~ 179 (207)
|.|++++|+++++.+...
T Consensus 148 g~gv~~l~~~l~~~~~~~ 165 (198)
T cd04147 148 NENVLEVFKELLRQANLP 165 (198)
T ss_pred CCCHHHHHHHHHHHhhcc
Confidence 999999999999987644
No 101
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.97 E-value=5.5e-30 Score=184.36 Aligned_cols=158 Identities=30% Similarity=0.533 Sum_probs=140.2
Q ss_pred eEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEEEe
Q 028595 6 KLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS 85 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 85 (207)
||+++|.+++| ||||+++++++.+...+.++.+..+...+..++..+.+.+||+||++.+..++..+++++|++++|||
T Consensus 1 ki~i~G~~~~G-KTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d 79 (160)
T cd00876 1 KVVVLGAGGVG-KSAITIQFVKGTFVEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYS 79 (160)
T ss_pred CEEEECCCCCC-HHHHHHHHHhCCCCcCcCCChhHeEEEEEEECCEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEE
Confidence 79999999999 99999999999888888899886667778888888999999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhcC--CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCCCC
Q 028595 86 LVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ 163 (207)
Q Consensus 86 ~~~~~s~~~~~~~~~~~i~~~~--~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~ 163 (207)
+++++++.++ ..|...+.... ...|+++++||+|+.+.... ..++++.++..++. +++++||+++.
T Consensus 80 ~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~~----------~~~~~~~~~~~~~~-~~~~~S~~~~~ 147 (160)
T cd00876 80 ITDRESFEEI-KGYREQILRVKDDEDIPIVLVGNKCDLENERQV----------SKEEGKALAKEWGC-PFIETSAKDNI 147 (160)
T ss_pred CCCHHHHHHH-HHHHHHHHHhcCCCCCcEEEEEECCccccccee----------cHHHHHHHHHHcCC-cEEEeccCCCC
Confidence 9999999998 67766666554 48999999999999875543 77889999998886 99999999999
Q ss_pred CHHHHHHHHHHHH
Q 028595 164 NVKAVFDAAIKVV 176 (207)
Q Consensus 164 ~i~~~f~~i~~~~ 176 (207)
|++++|++|++.+
T Consensus 148 ~i~~l~~~l~~~i 160 (160)
T cd00876 148 NIDEVFKLLVREI 160 (160)
T ss_pred CHHHHHHHHHhhC
Confidence 9999999998753
No 102
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.97 E-value=1.9e-30 Score=188.81 Aligned_cols=155 Identities=14% Similarity=0.138 Sum_probs=122.4
Q ss_pred cceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEE
Q 028595 3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 82 (207)
Q Consensus 3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~ 82 (207)
...||+++|.+++| ||||++++..+.+. .+.||++.++. .+. ...+.+.+|||+|+++++.++..+++++|++|+
T Consensus 8 ~~~kv~i~G~~~~G-KTsli~~l~~~~~~-~~~~t~g~~~~-~~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~ 82 (168)
T cd04149 8 KEMRILMLGLDAAG-KTTILYKLKLGQSV-TTIPTVGFNVE-TVT--YKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF 82 (168)
T ss_pred CccEEEEECcCCCC-HHHHHHHHccCCCc-cccCCcccceE-EEE--ECCEEEEEEECCCCHHHHHHHHHHhccCCEEEE
Confidence 35799999999999 99999999887764 46788876553 222 245889999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhc-CCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHh---C-CcEEEEe
Q 028595 83 AFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI---G-ASYYIEC 157 (207)
Q Consensus 83 v~d~~~~~s~~~~~~~~~~~i~~~-~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~---~-~~~~~e~ 157 (207)
|||++++.++.++...|...+... .+++|++||+||+|+.+.. ..++++.+++.. + ..+++++
T Consensus 83 v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~------------~~~~i~~~~~~~~~~~~~~~~~~~ 150 (168)
T cd04149 83 VVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAM------------KPHEIQEKLGLTRIRDRNWYVQPS 150 (168)
T ss_pred EEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccCC------------CHHHHHHHcCCCccCCCcEEEEEe
Confidence 999999999999844444444432 2679999999999986431 556666654321 1 1268999
Q ss_pred ccCCCCCHHHHHHHHHH
Q 028595 158 SSKTQQNVKAVFDAAIK 174 (207)
Q Consensus 158 Sa~~~~~i~~~f~~i~~ 174 (207)
||++|.|++++|++|.+
T Consensus 151 SAk~g~gv~~~~~~l~~ 167 (168)
T cd04149 151 CATSGDGLYEGLTWLSS 167 (168)
T ss_pred eCCCCCChHHHHHHHhc
Confidence 99999999999999864
No 103
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.97 E-value=7.3e-31 Score=190.31 Aligned_cols=152 Identities=15% Similarity=0.161 Sum_probs=126.9
Q ss_pred EEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEEEeC
Q 028595 7 LACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSL 86 (207)
Q Consensus 7 i~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~ 86 (207)
|+++|.+++| ||||+++|.++.+...+.||++..+ ..+++..+.+.+||++|++.++.++..+++++|++++|||.
T Consensus 2 i~ivG~~~vG-KTsli~~~~~~~~~~~~~pt~g~~~---~~i~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~ 77 (164)
T cd04162 2 ILVLGLDGAG-KTSLLHSLSSERSLESVVPTTGFNS---VAIPTQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDS 77 (164)
T ss_pred EEEECCCCCC-HHHHHHHHhcCCCcccccccCCcce---EEEeeCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEEC
Confidence 7899999999 9999999999988888899987543 33455678999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCH----HHHHHHHHHhCCcEEEEeccCC-
Q 028595 87 VSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTT----AQGEELRKQIGASYYIECSSKT- 161 (207)
Q Consensus 87 ~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~----~~~~~~~~~~~~~~~~e~Sa~~- 161 (207)
+++.++..+ ..|+..+....+++|+++|+||.|+...+.+ .. .++..++++.++ .++++||++
T Consensus 78 t~~~s~~~~-~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~----------~~i~~~~~~~~~~~~~~~-~~~~~Sa~~~ 145 (164)
T cd04162 78 ADSERLPLA-RQELHQLLQHPPDLPLVVLANKQDLPAARSV----------QEIHKELELEPIARGRRW-ILQGTSLDDD 145 (164)
T ss_pred CCHHHHHHH-HHHHHHHHhCCCCCcEEEEEeCcCCcCCCCH----------HHHHHHhCChhhcCCCce-EEEEeeecCC
Confidence 999999988 6777766544478999999999998765431 11 235667776776 889988888
Q ss_pred -----CCCHHHHHHHHHH
Q 028595 162 -----QQNVKAVFDAAIK 174 (207)
Q Consensus 162 -----~~~i~~~f~~i~~ 174 (207)
++|++++|..++.
T Consensus 146 ~s~~~~~~v~~~~~~~~~ 163 (164)
T cd04162 146 GSPSRMEAVKDLLSQLIN 163 (164)
T ss_pred CChhHHHHHHHHHHHHhc
Confidence 9999999998864
No 104
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.97 E-value=4.6e-30 Score=186.99 Aligned_cols=157 Identities=13% Similarity=0.176 Sum_probs=127.3
Q ss_pred eEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEEEe
Q 028595 6 KLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS 85 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 85 (207)
||+++|.+++| ||||++++.++.+. .+.||.+..+. .+. ...+.+.+|||||++.+..++..+++++|++++|||
T Consensus 1 ~vvlvG~~~~G-KTsl~~~l~~~~~~-~~~~T~~~~~~-~~~--~~~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D 75 (169)
T cd04158 1 RVVTLGLDGAG-KTTILFKLKQDEFM-QPIPTIGFNVE-TVE--YKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVD 75 (169)
T ss_pred CEEEECCCCCC-HHHHHHHHhcCCCC-CcCCcCceeEE-EEE--ECCEEEEEEECCCChhcchHHHHHhccCCEEEEEEe
Confidence 68999999999 99999999998765 47888875553 233 345889999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhcC--CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCC-----cEEEEec
Q 028595 86 LVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA-----SYYIECS 158 (207)
Q Consensus 86 ~~~~~s~~~~~~~~~~~i~~~~--~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~e~S 158 (207)
+++++++.++ ..|+..+.... .+.|+++++||+|+.+. +..++++++++..+. ..++++|
T Consensus 76 ~s~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~S 142 (169)
T cd04158 76 SSHRDRVSEA-HSELAKLLTEKELRDALLLIFANKQDVAGA------------LSVEEMTELLSLHKLCCGRSWYIQGCD 142 (169)
T ss_pred CCcHHHHHHH-HHHHHHHhcChhhCCCCEEEEEeCcCcccC------------CCHHHHHHHhCCccccCCCcEEEEeCc
Confidence 9999999998 66666664332 46899999999999643 266777777653321 2577999
Q ss_pred cCCCCCHHHHHHHHHHHHhCCC
Q 028595 159 SKTQQNVKAVFDAAIKVVIKPP 180 (207)
Q Consensus 159 a~~~~~i~~~f~~i~~~~~~~~ 180 (207)
|++|.|++++|++|++.+....
T Consensus 143 a~~g~gv~~~f~~l~~~~~~~~ 164 (169)
T cd04158 143 ARSGMGLYEGLDWLSRQLVAAG 164 (169)
T ss_pred CCCCCCHHHHHHHHHHHHhhcc
Confidence 9999999999999998877654
No 105
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.97 E-value=1.5e-32 Score=192.80 Aligned_cols=168 Identities=27% Similarity=0.337 Sum_probs=157.1
Q ss_pred CccceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeee-EEEECCeEEEEEEEeCCCCccccccccceecCCcE
Q 028595 1 MELLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSA-NVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADV 79 (207)
Q Consensus 1 m~~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~ 79 (207)
||.-+|++++|+.+|| |||+|+++|.+-|..+|..|+|.++.. ++.++++.+.+.+||++||+.++.+...|+++|++
T Consensus 17 ~e~aiK~vivGng~VG-KssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkAyyrgaqa 95 (246)
T KOG4252|consen 17 YERAIKFVIVGNGSVG-KSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKAYYRGAQA 95 (246)
T ss_pred hhhhEEEEEECCCccc-hHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHHHhccccc
Confidence 5778999999999999 999999999999999999999999844 78888888999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEecc
Q 028595 80 FVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSS 159 (207)
Q Consensus 80 ~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa 159 (207)
.++||+.+|+.||+.. ..|.+.+......+|.++|-||+|+.++..+ ..++++.+++.+++ .++.+|+
T Consensus 96 ~vLVFSTTDr~SFea~-~~w~~kv~~e~~~IPtV~vqNKIDlveds~~----------~~~evE~lak~l~~-RlyRtSv 163 (246)
T KOG4252|consen 96 SVLVFSTTDRYSFEAT-LEWYNKVQKETERIPTVFVQNKIDLVEDSQM----------DKGEVEGLAKKLHK-RLYRTSV 163 (246)
T ss_pred eEEEEecccHHHHHHH-HHHHHHHHHHhccCCeEEeeccchhhHhhhc----------chHHHHHHHHHhhh-hhhhhhh
Confidence 9999999999999999 8999999988889999999999999988875 89999999999998 8999999
Q ss_pred CCCCCHHHHHHHHHHHHhCCCc
Q 028595 160 KTQQNVKAVFDAAIKVVIKPPQ 181 (207)
Q Consensus 160 ~~~~~i~~~f~~i~~~~~~~~~ 181 (207)
+...|+..+|..|++++.+...
T Consensus 164 ked~NV~~vF~YLaeK~~q~~k 185 (246)
T KOG4252|consen 164 KEDFNVMHVFAYLAEKLTQQKK 185 (246)
T ss_pred hhhhhhHHHHHHHHHHHHHHHH
Confidence 9999999999999999876543
No 106
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.97 E-value=1.7e-29 Score=181.11 Aligned_cols=156 Identities=33% Similarity=0.600 Sum_probs=139.4
Q ss_pred eeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEE
Q 028595 5 AKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA 83 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v 83 (207)
.||+++|.+++| ||||++++.++.+...+.+|.+.++ ...+..++..+.+.+||+||++.+...+..+++++|++++|
T Consensus 1 ~~i~~~G~~~~G-KStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v 79 (159)
T cd00154 1 FKIVLIGDSGVG-KTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERFRSITPSYYRGAHGAILV 79 (159)
T ss_pred CeEEEECCCCCC-HHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEE
Confidence 489999999999 9999999999998888888888777 45777788889999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCCC
Q 028595 84 FSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQ 162 (207)
Q Consensus 84 ~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~ 162 (207)
+|+++++++..+ ..|+..+.... ++.|+++++||+|+..... ...++.+.++..++. +++++||+++
T Consensus 80 ~d~~~~~~~~~~-~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~~----------~~~~~~~~~~~~~~~-~~~~~sa~~~ 147 (159)
T cd00154 80 YDITNRESFENL-DKWLKELKEYAPENIPIILVGNKIDLEDQRQ----------VSTEEAQQFAKENGL-LFFETSAKTG 147 (159)
T ss_pred EECCCHHHHHHH-HHHHHHHHHhCCCCCcEEEEEEccccccccc----------ccHHHHHHHHHHcCC-eEEEEecCCC
Confidence 999999999999 77998887776 6899999999999974443 277889999998887 9999999999
Q ss_pred CCHHHHHHHHH
Q 028595 163 QNVKAVFDAAI 173 (207)
Q Consensus 163 ~~i~~~f~~i~ 173 (207)
.|++++|.+++
T Consensus 148 ~~i~~~~~~i~ 158 (159)
T cd00154 148 ENVEELFQSLA 158 (159)
T ss_pred CCHHHHHHHHh
Confidence 99999999986
No 107
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.97 E-value=9.1e-30 Score=187.52 Aligned_cols=157 Identities=15% Similarity=0.182 Sum_probs=122.2
Q ss_pred cceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEE
Q 028595 3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 82 (207)
Q Consensus 3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~ 82 (207)
..+||+++|.+++| ||||++++..+.+.. +.||++..+. .+.. ..+.+.+|||||++.++.++..+++++|++|+
T Consensus 16 ~~~kv~lvG~~~vG-KTsli~~~~~~~~~~-~~~T~~~~~~-~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~ 90 (182)
T PTZ00133 16 KEVRILMVGLDAAG-KTTILYKLKLGEVVT-TIPTIGFNVE-TVEY--KNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIF 90 (182)
T ss_pred CccEEEEEcCCCCC-HHHHHHHHhcCCccc-cCCccccceE-EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence 45899999999999 999999998887764 6788876553 2333 45889999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhc-CCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCC-------cEE
Q 028595 83 AFSLVSRASYENVLKKWIPELQHY-SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA-------SYY 154 (207)
Q Consensus 83 v~d~~~~~s~~~~~~~~~~~i~~~-~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-------~~~ 154 (207)
|||+++++++.++...+...+... .+++|++||+||.|+.+.. ..++. +..++. ..+
T Consensus 91 v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~------------~~~~i---~~~l~~~~~~~~~~~~ 155 (182)
T PTZ00133 91 VVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAM------------STTEV---TEKLGLHSVRQRNWYI 155 (182)
T ss_pred EEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCC------------CHHHH---HHHhCCCcccCCcEEE
Confidence 999999999999844444444332 2578999999999986532 22222 222222 146
Q ss_pred EEeccCCCCCHHHHHHHHHHHHhCC
Q 028595 155 IECSSKTQQNVKAVFDAAIKVVIKP 179 (207)
Q Consensus 155 ~e~Sa~~~~~i~~~f~~i~~~~~~~ 179 (207)
+++||++|.|++++|++|.+.+.+.
T Consensus 156 ~~~Sa~tg~gv~e~~~~l~~~i~~~ 180 (182)
T PTZ00133 156 QGCCATTAQGLYEGLDWLSANIKKS 180 (182)
T ss_pred EeeeCCCCCCHHHHHHHHHHHHHHh
Confidence 6999999999999999999877654
No 108
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.96 E-value=1.5e-29 Score=185.36 Aligned_cols=157 Identities=12% Similarity=0.124 Sum_probs=120.3
Q ss_pred cceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEE
Q 028595 3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 82 (207)
Q Consensus 3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~ 82 (207)
...||+++|.+++| ||||++++..+.+. .+.||++..+. .+.. ..+.+.+|||||++.++.++..|++++|++|+
T Consensus 12 ~~~ki~l~G~~~~G-KTsL~~~~~~~~~~-~~~~t~~~~~~-~~~~--~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~ 86 (175)
T smart00177 12 KEMRILMVGLDAAG-KTTILYKLKLGESV-TTIPTIGFNVE-TVTY--KNISFTVWDVGGQDKIRPLWRHYYTNTQGLIF 86 (175)
T ss_pred CccEEEEEcCCCCC-HHHHHHHHhcCCCC-CcCCccccceE-EEEE--CCEEEEEEECCCChhhHHHHHHHhCCCCEEEE
Confidence 35799999999999 99999999887764 57788876553 2333 35889999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHH-hhc-CCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHh----CCcEEEE
Q 028595 83 AFSLVSRASYENVLKKWIPEL-QHY-SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI----GASYYIE 156 (207)
Q Consensus 83 v~d~~~~~s~~~~~~~~~~~i-~~~-~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~----~~~~~~e 156 (207)
|||++++++++++ ..|+..+ ... .+++|++||+||.|+.+.. ..++........ ....+++
T Consensus 87 v~D~t~~~s~~~~-~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~------------~~~~i~~~~~~~~~~~~~~~~~~ 153 (175)
T smart00177 87 VVDSNDRDRIDEA-REELHRMLNEDELRDAVILVFANKQDLPDAM------------KAAEITEKLGLHSIRDRNWYIQP 153 (175)
T ss_pred EEECCCHHHHHHH-HHHHHHHhhCHhhcCCcEEEEEeCcCcccCC------------CHHHHHHHhCccccCCCcEEEEE
Confidence 9999999999998 4554444 332 2579999999999986542 222222221111 1114678
Q ss_pred eccCCCCCHHHHHHHHHHHHh
Q 028595 157 CSSKTQQNVKAVFDAAIKVVI 177 (207)
Q Consensus 157 ~Sa~~~~~i~~~f~~i~~~~~ 177 (207)
+||++|.|++++|++|.+.+.
T Consensus 154 ~Sa~~g~gv~e~~~~l~~~~~ 174 (175)
T smart00177 154 TCATSGDGLYEGLTWLSNNLK 174 (175)
T ss_pred eeCCCCCCHHHHHHHHHHHhc
Confidence 999999999999999987653
No 109
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.96 E-value=1.3e-29 Score=186.86 Aligned_cols=163 Identities=17% Similarity=0.197 Sum_probs=128.7
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEE-CCeEEEEEEEeCCCCccccccccceecCCcEEE
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVA-EGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 81 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i 81 (207)
-+||+++|.+++| ||||++++..+.+... .||.+... ...+.+ ++..+.+.+|||+|++.+..++..+++++|+++
T Consensus 3 ~~kv~~vG~~~~G-KTsli~~~~~~~~~~~-~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii 80 (183)
T cd04152 3 SLHIVMLGLDSAG-KTTVLYRLKFNEFVNT-VPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIV 80 (183)
T ss_pred ceEEEEECCCCCC-HHHHHHHHhcCCcCCc-CCccccceeEEEeeccCCCceEEEEEECCCcHhHHHHHHHHhccCCEEE
Confidence 4799999999999 9999999998887644 67776444 334443 446789999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhcC--CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhC-----CcEE
Q 028595 82 LAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG-----ASYY 154 (207)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-----~~~~ 154 (207)
+|||+++++++..+ ..|+..+.... .+.|+++|+||+|+.+.. ..++...+....+ ..++
T Consensus 81 ~v~D~~~~~~~~~~-~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~~------------~~~~~~~~~~~~~~~~~~~~~~ 147 (183)
T cd04152 81 FVVDSVDVERMEEA-KTELHKITRFSENQGVPVLVLANKQDLPNAL------------SVSEVEKLLALHELSASTPWHV 147 (183)
T ss_pred EEEECCCHHHHHHH-HHHHHHHHhhhhcCCCcEEEEEECcCccccC------------CHHHHHHHhCccccCCCCceEE
Confidence 99999999999888 66766665433 479999999999986432 3444554443111 1267
Q ss_pred EEeccCCCCCHHHHHHHHHHHHhCCCc
Q 028595 155 IECSSKTQQNVKAVFDAAIKVVIKPPQ 181 (207)
Q Consensus 155 ~e~Sa~~~~~i~~~f~~i~~~~~~~~~ 181 (207)
+++||++|+|++++|++|++.+...++
T Consensus 148 ~~~SA~~~~gi~~l~~~l~~~l~~~~~ 174 (183)
T cd04152 148 QPACAIIGEGLQEGLEKLYEMILKRRK 174 (183)
T ss_pred EEeecccCCCHHHHHHHHHHHHHHHHh
Confidence 899999999999999999999976544
No 110
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.96 E-value=5.9e-29 Score=187.89 Aligned_cols=163 Identities=23% Similarity=0.356 Sum_probs=141.5
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeee-eEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEE
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 82 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~ 82 (207)
.+||+++|.+++| ||||+++++.+.+...|.||.+..+. ..+..++..+.+.+|||+|++.+..++..++.+++++++
T Consensus 9 ~~kv~liG~~g~G-KTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~~i~ 87 (215)
T PTZ00132 9 EFKLILVGDGGVG-KTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQCAII 87 (215)
T ss_pred CceEEEECCCCCC-HHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCchhhhhhhHHHhccCCEEEE
Confidence 5799999999999 99999999989888899999988774 466678889999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCCC
Q 028595 83 AFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQ 162 (207)
Q Consensus 83 v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~ 162 (207)
|||+++..++..+ ..|+..+....++.|+++++||+|+.+... ..+ ...+++..++ .++++||++|
T Consensus 88 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~i~lv~nK~Dl~~~~~-----------~~~-~~~~~~~~~~-~~~e~Sa~~~ 153 (215)
T PTZ00132 88 MFDVTSRITYKNV-PNWHRDIVRVCENIPIVLVGNKVDVKDRQV-----------KAR-QITFHRKKNL-QYYDISAKSN 153 (215)
T ss_pred EEECcCHHHHHHH-HHHHHHHHHhCCCCCEEEEEECccCccccC-----------CHH-HHHHHHHcCC-EEEEEeCCCC
Confidence 9999999999999 789888877667899999999999864321 333 3457777777 8999999999
Q ss_pred CCHHHHHHHHHHHHhCCCc
Q 028595 163 QNVKAVFDAAIKVVIKPPQ 181 (207)
Q Consensus 163 ~~i~~~f~~i~~~~~~~~~ 181 (207)
.|++++|.++++.+...+.
T Consensus 154 ~~v~~~f~~ia~~l~~~p~ 172 (215)
T PTZ00132 154 YNFEKPFLWLARRLTNDPN 172 (215)
T ss_pred CCHHHHHHHHHHHHhhccc
Confidence 9999999999999886543
No 111
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.96 E-value=6.5e-30 Score=184.44 Aligned_cols=152 Identities=13% Similarity=0.152 Sum_probs=117.1
Q ss_pred eeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEEE
Q 028595 5 AKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 84 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 84 (207)
.||+++|.+++| ||||++++..+.+. .+.||++..+. .+.. ..+.+.+||+||++++..++..+++++|++++||
T Consensus 1 ~kv~~~G~~~~G-KTsli~~l~~~~~~-~~~pt~g~~~~-~~~~--~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~ 75 (159)
T cd04150 1 MRILMVGLDAAG-KTTILYKLKLGEIV-TTIPTIGFNVE-TVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 75 (159)
T ss_pred CEEEEECCCCCC-HHHHHHHHhcCCCc-ccCCCCCcceE-EEEE--CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEE
Confidence 489999999999 99999999888876 57888876543 2333 3588999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHH-HHHHHH----HhCCcEEEEec
Q 028595 85 SLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQ-GEELRK----QIGASYYIECS 158 (207)
Q Consensus 85 d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~-~~~~~~----~~~~~~~~e~S 158 (207)
|++++.++..+...|...+.... .++|+++++||+|+.+.. ..++ ...+.. ..+. .++++|
T Consensus 76 D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~------------~~~~i~~~~~~~~~~~~~~-~~~~~S 142 (159)
T cd04150 76 DSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAM------------SAAEVTDKLGLHSLRNRNW-YIQATC 142 (159)
T ss_pred eCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCC------------CHHHHHHHhCccccCCCCE-EEEEee
Confidence 99999999998433444443322 479999999999986432 2222 222211 1122 577999
Q ss_pred cCCCCCHHHHHHHHHH
Q 028595 159 SKTQQNVKAVFDAAIK 174 (207)
Q Consensus 159 a~~~~~i~~~f~~i~~ 174 (207)
|++|+|++++|++|.+
T Consensus 143 ak~g~gv~~~~~~l~~ 158 (159)
T cd04150 143 ATSGDGLYEGLDWLSN 158 (159)
T ss_pred CCCCCCHHHHHHHHhc
Confidence 9999999999999864
No 112
>PTZ00099 rab6; Provisional
Probab=99.96 E-value=4.9e-28 Score=177.05 Aligned_cols=142 Identities=28% Similarity=0.456 Sum_probs=125.2
Q ss_pred CCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhc
Q 028595 28 RSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY 106 (207)
Q Consensus 28 ~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~ 106 (207)
+.|.+.|.||+|..+ ...+.+++..+.+.||||+|++++..++..+++++|++|+|||++++++++.+ ..|+..+...
T Consensus 3 ~~F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~-~~w~~~i~~~ 81 (176)
T PTZ00099 3 DTFDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENT-TKWIQDILNE 81 (176)
T ss_pred CCcCCCCCCccceEEEEEEEEECCEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHH-HHHHHHHHHh
Confidence 456778999999777 55788899999999999999999999999999999999999999999999999 7888877654
Q ss_pred C-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCCCCCHHHHHHHHHHHHhCCCc
Q 028595 107 S-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPPQ 181 (207)
Q Consensus 107 ~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i~~~~~~~~~ 181 (207)
. +++|++|||||+|+.+.+. +..+++..+++.++. .|+++||++|.||+++|++|++.+.+.++
T Consensus 82 ~~~~~piilVgNK~DL~~~~~----------v~~~e~~~~~~~~~~-~~~e~SAk~g~nV~~lf~~l~~~l~~~~~ 146 (176)
T PTZ00099 82 RGKDVIIALVGNKTDLGDLRK----------VTYEEGMQKAQEYNT-MFHETSAKAGHNIKVLFKKIAAKLPNLDN 146 (176)
T ss_pred cCCCCeEEEEEECcccccccC----------CCHHHHHHHHHHcCC-EEEEEECCCCCCHHHHHHHHHHHHHhccc
Confidence 4 6799999999999976554 378889999999988 89999999999999999999999876543
No 113
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.96 E-value=1.2e-28 Score=183.63 Aligned_cols=149 Identities=19% Similarity=0.211 Sum_probs=122.1
Q ss_pred eeEEEEecccccceeeeeeeccCCCCCccccCceeeeeee-EEEEC-----CeEEEEEEEeCCCCccccccccceecCCc
Q 028595 5 AKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSA-NVVAE-----GTTVNLGLWDTAGQEDYNRLRPLSYRGAD 78 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~-~~~~~-----~~~~~l~i~D~~G~~~~~~~~~~~~~~~d 78 (207)
+||+++|+.+|| ||||+++|+++.+...+.||++..+.. .+.++ +..+.+.||||+|++.+..++..+++++|
T Consensus 1 vKIvlvGd~gVG-KTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad 79 (202)
T cd04102 1 VRVLVVGDSGVG-KSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVN 79 (202)
T ss_pred CEEEEECCCCCC-HHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCC
Confidence 489999999999 999999999999998999999876633 44443 57899999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhhc-------------------C-CCCcEEEEeeCCCcccCcccccCCCCCcccC
Q 028595 79 VFVLAFSLVSRASYENVLKKWIPELQHY-------------------S-PGVPVVLVGTKLDLREDKHYLADHPGLVPVT 138 (207)
Q Consensus 79 ~~i~v~d~~~~~s~~~~~~~~~~~i~~~-------------------~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~ 138 (207)
++|+|||+++++|++.+ ..|+..+... . +++|++|||||.|+.+.+.+ .....
T Consensus 80 ~iIlVyDvtn~~Sf~~l-~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r~~------~~~~~ 152 (202)
T cd04102 80 GIILVHDLTNRKSSQNL-QRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKES------SGNLV 152 (202)
T ss_pred EEEEEEECcChHHHHHH-HHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhccc------chHHH
Confidence 99999999999999999 7999888652 1 46899999999999766542 00001
Q ss_pred HHHHHHHHHHhCCcEEEEeccCCC
Q 028595 139 TAQGEELRKQIGASYYIECSSKTQ 162 (207)
Q Consensus 139 ~~~~~~~~~~~~~~~~~e~Sa~~~ 162 (207)
......+++..|. +.++.++.+.
T Consensus 153 ~~~~~~ia~~~~~-~~i~~~c~~~ 175 (202)
T cd04102 153 LTARGFVAEQGNA-EEINLNCTNG 175 (202)
T ss_pred hhHhhhHHHhcCC-ceEEEecCCc
Confidence 1235567888898 8888888754
No 114
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.96 E-value=2.7e-28 Score=178.28 Aligned_cols=152 Identities=16% Similarity=0.162 Sum_probs=120.7
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEE
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA 83 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v 83 (207)
..||+++|.+++| ||||+++|.+..+ ..+.||.+.. ...+.++ .+.+.+|||||++.++.++..++.++|++++|
T Consensus 14 ~~kv~ivG~~~~G-KTsL~~~l~~~~~-~~~~~t~g~~-~~~~~~~--~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v 88 (173)
T cd04154 14 EMRILILGLDNAG-KTTILKKLLGEDI-DTISPTLGFQ-IKTLEYE--GYKLNIWDVGGQKTLRPYWRNYFESTDALIWV 88 (173)
T ss_pred ccEEEEECCCCCC-HHHHHHHHccCCC-CCcCCccccc-eEEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEEEE
Confidence 5799999999999 9999999998754 4567887632 2334444 47899999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhc--CCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHH-----hCCcEEEE
Q 028595 84 FSLVSRASYENVLKKWIPELQHY--SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ-----IGASYYIE 156 (207)
Q Consensus 84 ~d~~~~~s~~~~~~~~~~~i~~~--~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~-----~~~~~~~e 156 (207)
||++++.++.++ ..|+..+... .+++|+++|+||+|+.+.. ..++++.+.+. .++ ++++
T Consensus 89 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~~~~-~~~~ 154 (173)
T cd04154 89 VDSSDRLRLDDC-KRELKELLQEERLAGATLLILANKQDLPGAL------------SEEEIREALELDKISSHHW-RIQP 154 (173)
T ss_pred EECCCHHHHHHH-HHHHHHHHhChhhcCCCEEEEEECcccccCC------------CHHHHHHHhCccccCCCce-EEEe
Confidence 999999999988 5565555322 2689999999999996543 34455555432 234 8999
Q ss_pred eccCCCCCHHHHHHHHHH
Q 028595 157 CSSKTQQNVKAVFDAAIK 174 (207)
Q Consensus 157 ~Sa~~~~~i~~~f~~i~~ 174 (207)
+||++|.|++++|++++.
T Consensus 155 ~Sa~~g~gi~~l~~~l~~ 172 (173)
T cd04154 155 CSAVTGEGLLQGIDWLVD 172 (173)
T ss_pred ccCCCCcCHHHHHHHHhc
Confidence 999999999999999864
No 115
>PLN00023 GTP-binding protein; Provisional
Probab=99.95 E-value=7e-28 Score=187.97 Aligned_cols=145 Identities=19% Similarity=0.230 Sum_probs=121.1
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEEC-------------CeEEEEEEEeCCCCcccccc
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAE-------------GTTVNLGLWDTAGQEDYNRL 69 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~-------------~~~~~l~i~D~~G~~~~~~~ 69 (207)
.+||+++|..+|| ||||+++|+++.+...+.+|+|..+ .+.+.++ +..+.++||||+|+++|+.+
T Consensus 21 ~iKIVLLGdsGVG-KTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfrsL 99 (334)
T PLN00023 21 QVRVLVVGDSGVG-KSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYKDC 99 (334)
T ss_pred ceEEEEECCCCCc-HHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhhhh
Confidence 4799999999999 9999999999999889999999876 4455554 35789999999999999999
Q ss_pred ccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC-------------CCCcEEEEeeCCCcccCcccccCCCCCcc
Q 028595 70 RPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-------------PGVPVVLVGTKLDLREDKHYLADHPGLVP 136 (207)
Q Consensus 70 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-------------~~~piivv~nK~D~~~~~~~~~~~~~~~~ 136 (207)
+..|++++|++|+|||++++++++++ ..|+..+.... .++|++|||||+|+...+.. .....
T Consensus 100 ~~~yyr~AdgiILVyDITdr~SFenL-~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~----r~~s~ 174 (334)
T PLN00023 100 RSLFYSQINGVIFVHDLSQRRTKTSL-QKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGT----RGSSG 174 (334)
T ss_pred hHHhccCCCEEEEEEeCCCHHHHHHH-HHHHHHHHHhcccccccccccccCCCCcEEEEEECccccccccc----ccccc
Confidence 99999999999999999999999999 89999987642 25899999999999654310 00111
Q ss_pred cCHHHHHHHHHHhCCcEE
Q 028595 137 VTTAQGEELRKQIGASYY 154 (207)
Q Consensus 137 v~~~~~~~~~~~~~~~~~ 154 (207)
+..+++++||++.|+.+.
T Consensus 175 ~~~e~a~~~A~~~g~l~~ 192 (334)
T PLN00023 175 NLVDAARQWVEKQGLLPS 192 (334)
T ss_pred ccHHHHHHHHHHcCCCcc
Confidence 367899999999987543
No 116
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.95 E-value=3.8e-28 Score=175.30 Aligned_cols=152 Identities=14% Similarity=0.130 Sum_probs=116.3
Q ss_pred eEEEEecccccceeeeeeeccCCC-CCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEEE
Q 028595 6 KLACLFATQVTSFLLYVLSVSGRS-SIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 84 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 84 (207)
+|+++|.+++| ||||+++|.++. ....+.||++.... .+. ...+.+.+|||||++.+..++..+++++|++|+|+
T Consensus 1 ~i~~vG~~~~G-KTsl~~~l~~~~~~~~~~~~t~g~~~~-~~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~ 76 (162)
T cd04157 1 NILVVGLDNSG-KTTIINQLKPENAQSQIIVPTVGFNVE-SFE--KGNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVI 76 (162)
T ss_pred CEEEECCCCCC-HHHHHHHHcccCCCcceecCccccceE-EEE--ECCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEE
Confidence 58999999999 999999999876 35677888874432 222 34578999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhc----CCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHH---HHHhC-CcEEEE
Q 028595 85 SLVSRASYENVLKKWIPELQHY----SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEEL---RKQIG-ASYYIE 156 (207)
Q Consensus 85 d~~~~~s~~~~~~~~~~~i~~~----~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~~-~~~~~e 156 (207)
|++++.++..+ ..|+..+... ..++|+++|+||+|+.+.. ..++.... ....+ ..++++
T Consensus 77 D~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~------------~~~~~~~~l~~~~~~~~~~~~~~ 143 (162)
T cd04157 77 DSSDRLRLVVV-KDELELLLNHPDIKHRRVPILFFANKMDLPDAL------------TAVKITQLLGLENIKDKPWHIFA 143 (162)
T ss_pred eCCcHHHHHHH-HHHHHHHHcCcccccCCCCEEEEEeCccccCCC------------CHHHHHHHhCCccccCceEEEEE
Confidence 99999999887 5666555332 1479999999999986542 22222221 11111 125899
Q ss_pred eccCCCCCHHHHHHHHHH
Q 028595 157 CSSKTQQNVKAVFDAAIK 174 (207)
Q Consensus 157 ~Sa~~~~~i~~~f~~i~~ 174 (207)
+||++|.|++++|++|.+
T Consensus 144 ~Sa~~g~gv~~~~~~l~~ 161 (162)
T cd04157 144 SNALTGEGLDEGVQWLQA 161 (162)
T ss_pred eeCCCCCchHHHHHHHhc
Confidence 999999999999999864
No 117
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.95 E-value=1.8e-27 Score=174.14 Aligned_cols=152 Identities=17% Similarity=0.198 Sum_probs=118.7
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEE
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA 83 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v 83 (207)
.+||+++|.+++| ||||++++..+.+.. +.||.+..+. .+..+ .+.+.+||+||++.+...+..+++++|++++|
T Consensus 15 ~~kv~~~G~~~~G-KTsl~~~l~~~~~~~-~~~t~~~~~~-~~~~~--~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V 89 (174)
T cd04153 15 EYKVIIVGLDNAG-KTTILYQFLLGEVVH-TSPTIGSNVE-EIVYK--NIRFLMWDIGGQESLRSSWNTYYTNTDAVILV 89 (174)
T ss_pred ccEEEEECCCCCC-HHHHHHHHccCCCCC-cCCccccceE-EEEEC--CeEEEEEECCCCHHHHHHHHHHhhcCCEEEEE
Confidence 5799999999999 999999999888764 5788876653 33333 47899999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHH-hhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHH-HHHHH----HHhCCcEEEE
Q 028595 84 FSLVSRASYENVLKKWIPEL-QHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQ-GEELR----KQIGASYYIE 156 (207)
Q Consensus 84 ~d~~~~~s~~~~~~~~~~~i-~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~-~~~~~----~~~~~~~~~e 156 (207)
+|+++++++... ..++..+ .... +++|+++++||+|+.+.. ..++ .+.+. +..++ ++++
T Consensus 90 ~D~s~~~~~~~~-~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~~------------~~~~i~~~l~~~~~~~~~~-~~~~ 155 (174)
T cd04153 90 IDSTDRERLPLT-KEELYKMLAHEDLRKAVLLVLANKQDLKGAM------------TPAEISESLGLTSIRDHTW-HIQG 155 (174)
T ss_pred EECCCHHHHHHH-HHHHHHHHhchhhcCCCEEEEEECCCCCCCC------------CHHHHHHHhCcccccCCce-EEEe
Confidence 999999999888 4444444 3322 579999999999986532 2222 22221 22344 7899
Q ss_pred eccCCCCCHHHHHHHHHH
Q 028595 157 CSSKTQQNVKAVFDAAIK 174 (207)
Q Consensus 157 ~Sa~~~~~i~~~f~~i~~ 174 (207)
+||++|.|++++|++|.+
T Consensus 156 ~SA~~g~gi~e~~~~l~~ 173 (174)
T cd04153 156 CCALTGEGLPEGLDWIAS 173 (174)
T ss_pred cccCCCCCHHHHHHHHhc
Confidence 999999999999999864
No 118
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.95 E-value=5.8e-28 Score=175.63 Aligned_cols=157 Identities=15% Similarity=0.140 Sum_probs=120.4
Q ss_pred eEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEEEe
Q 028595 6 KLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS 85 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 85 (207)
+|+++|.+++| ||||++++.++ +...+.||++.. ...+..+ .+.+.+||+||++.++.++..|++++|++|+|||
T Consensus 1 ~i~~~G~~~~G-KTsl~~~l~~~-~~~~~~~t~g~~-~~~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D 75 (167)
T cd04161 1 TLLTVGLDNAG-KTTLVSALQGE-IPKKVAPTVGFT-PTKLRLD--KYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVD 75 (167)
T ss_pred CEEEECCCCCC-HHHHHHHHhCC-CCccccCcccce-EEEEEEC--CEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEE
Confidence 48999999999 99999999977 677788998754 2344443 4789999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhcC--CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCC-cEEEEeccCCC
Q 028595 86 LVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA-SYYIECSSKTQ 162 (207)
Q Consensus 86 ~~~~~s~~~~~~~~~~~i~~~~--~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~e~Sa~~~ 162 (207)
++++.++.++ ..|+..+.... .++|+++|+||+|+.+..... ..+....+..++++.+. .+++++||++|
T Consensus 76 ~s~~~s~~~~-~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~~~------~i~~~~~l~~~~~~~~~~~~~~~~Sa~~g 148 (167)
T cd04161 76 SSDDDRVQEV-KEILRELLQHPRVSGKPILVLANKQDKKNALLGA------DVIEYLSLEKLVNENKSLCHIEPCSAIEG 148 (167)
T ss_pred CCchhHHHHH-HHHHHHHHcCccccCCcEEEEEeCCCCcCCCCHH------HHHHhcCcccccCCCCceEEEEEeEceeC
Confidence 9999999998 66776665432 579999999999997654210 00011112334433333 25677999998
Q ss_pred ------CCHHHHHHHHHH
Q 028595 163 ------QNVKAVFDAAIK 174 (207)
Q Consensus 163 ------~~i~~~f~~i~~ 174 (207)
.|+.+.|+||..
T Consensus 149 ~~~~~~~g~~~~~~wl~~ 166 (167)
T cd04161 149 LGKKIDPSIVEGLRWLLA 166 (167)
T ss_pred CCCccccCHHHHHHHHhc
Confidence 899999999964
No 119
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.95 E-value=2.5e-27 Score=170.65 Aligned_cols=151 Identities=15% Similarity=0.167 Sum_probs=115.1
Q ss_pred eEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEEEe
Q 028595 6 KLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS 85 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 85 (207)
||+++|.+++| ||||++++..+.+. .+.||++.++. .+. +..+.+.+|||||++.++.++..+++++|++++|+|
T Consensus 1 kv~lvG~~~~G-KTsl~~~l~~~~~~-~~~~t~~~~~~-~~~--~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d 75 (158)
T cd04151 1 RILILGLDNAG-KTTILYRLQLGEVV-TTIPTIGFNVE-TVT--YKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVD 75 (158)
T ss_pred CEEEECCCCCC-HHHHHHHHccCCCc-CcCCccCcCeE-EEE--ECCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEE
Confidence 68999999999 99999999888765 45677765442 222 345789999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHH-HHH----HHhCCcEEEEecc
Q 028595 86 LVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGE-ELR----KQIGASYYIECSS 159 (207)
Q Consensus 86 ~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~-~~~----~~~~~~~~~e~Sa 159 (207)
++++.++......|...+.... ++.|+++++||+|+.+.. ...+.. .+. ...+. +++++||
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~------------~~~~i~~~~~~~~~~~~~~-~~~~~Sa 142 (158)
T cd04151 76 STDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGAL------------SEAEISEKLGLSELKDRTW-SIFKTSA 142 (158)
T ss_pred CCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCC------------CHHHHHHHhCccccCCCcE-EEEEeec
Confidence 9999888776444444444322 579999999999986542 122221 111 11123 6999999
Q ss_pred CCCCCHHHHHHHHHH
Q 028595 160 KTQQNVKAVFDAAIK 174 (207)
Q Consensus 160 ~~~~~i~~~f~~i~~ 174 (207)
++|.|++++|+++++
T Consensus 143 ~~~~gi~~l~~~l~~ 157 (158)
T cd04151 143 IKGEGLDEGMDWLVN 157 (158)
T ss_pred cCCCCHHHHHHHHhc
Confidence 999999999999975
No 120
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.94 E-value=6.5e-27 Score=168.67 Aligned_cols=151 Identities=21% Similarity=0.234 Sum_probs=116.3
Q ss_pred eEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEEEe
Q 028595 6 KLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS 85 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 85 (207)
+|+++|.+++| ||||+++|.++.+.. +.||.+..+. .+.. +..+.+.+||+||++.+...+..++.++|++++|+|
T Consensus 1 ~i~i~G~~~~G-KTsl~~~~~~~~~~~-~~~t~~~~~~-~~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D 76 (160)
T cd04156 1 QVLLLGLDSAG-KSTLLYKLKHAELVT-TIPTVGFNVE-MLQL-EKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVD 76 (160)
T ss_pred CEEEEcCCCCC-HHHHHHHHhcCCccc-ccCccCcceE-EEEe-CCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEE
Confidence 58999999999 999999999998754 4677764432 2333 345889999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhc-C-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHH------HHHHHhCCcEEEEe
Q 028595 86 LVSRASYENVLKKWIPELQHY-S-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGE------ELRKQIGASYYIEC 157 (207)
Q Consensus 86 ~~~~~s~~~~~~~~~~~i~~~-~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~------~~~~~~~~~~~~e~ 157 (207)
++++.++..+ ..|+..+.+. . .+.|+++|+||+|+.... ..++.. .++...+. +++++
T Consensus 77 ~~~~~~~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~------------~~~~i~~~~~~~~~~~~~~~-~~~~~ 142 (160)
T cd04156 77 SSDEARLDES-QKELKHILKNEHIKGVPVVLLANKQDLPGAL------------TAEEITRRFKLKKYCSDRDW-YVQPC 142 (160)
T ss_pred CCcHHHHHHH-HHHHHHHHhchhhcCCCEEEEEECcccccCc------------CHHHHHHHcCCcccCCCCcE-EEEec
Confidence 9999999888 5555554332 2 589999999999986432 222222 22222333 68999
Q ss_pred ccCCCCCHHHHHHHHHH
Q 028595 158 SSKTQQNVKAVFDAAIK 174 (207)
Q Consensus 158 Sa~~~~~i~~~f~~i~~ 174 (207)
||++|+|++++|++|.+
T Consensus 143 Sa~~~~gv~~~~~~i~~ 159 (160)
T cd04156 143 SAVTGEGLAEAFRKLAS 159 (160)
T ss_pred ccccCCChHHHHHHHhc
Confidence 99999999999999864
No 121
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.94 E-value=9.8e-27 Score=172.47 Aligned_cols=154 Identities=17% Similarity=0.199 Sum_probs=122.7
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEE
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA 83 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v 83 (207)
..||+++|.+++| ||||++++.++.+. .+.||.+.. ...+.+++ +.+.+||+||++.+..++..+++++|++++|
T Consensus 19 ~~ki~ilG~~~~G-KStLi~~l~~~~~~-~~~~T~~~~-~~~i~~~~--~~~~l~D~~G~~~~~~~~~~~~~~ad~iilV 93 (190)
T cd00879 19 EAKILFLGLDNAG-KTTLLHMLKDDRLA-QHVPTLHPT-SEELTIGN--IKFKTFDLGGHEQARRLWKDYFPEVDGIVFL 93 (190)
T ss_pred CCEEEEECCCCCC-HHHHHHHHhcCCCc-ccCCccCcc-eEEEEECC--EEEEEEECCCCHHHHHHHHHHhccCCEEEEE
Confidence 5799999999999 99999999988764 567777653 33455555 6788999999999988899999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcC--CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHh------------
Q 028595 84 FSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI------------ 149 (207)
Q Consensus 84 ~d~~~~~s~~~~~~~~~~~i~~~~--~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~------------ 149 (207)
+|+++.+++... ..|+..+.... .+.|+++++||+|+... +..++.+.++...
T Consensus 94 ~D~~~~~s~~~~-~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (190)
T cd00879 94 VDAADPERFQES-KEELDSLLSDEELANVPFLILGNKIDLPGA------------VSEEELRQALGLYGTTTGKGVSLKV 160 (190)
T ss_pred EECCcHHHHHHH-HHHHHHHHcCccccCCCEEEEEeCCCCCCC------------cCHHHHHHHhCcccccccccccccc
Confidence 999999999887 45555543322 57999999999998642 2556666666432
Q ss_pred ---CCcEEEEeccCCCCCHHHHHHHHHHH
Q 028595 150 ---GASYYIECSSKTQQNVKAVFDAAIKV 175 (207)
Q Consensus 150 ---~~~~~~e~Sa~~~~~i~~~f~~i~~~ 175 (207)
...++++|||++|+|++++|+++++.
T Consensus 161 ~~~~~~~~~~~Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 161 SGIRPIEVFMCSVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred cCceeEEEEEeEecCCCChHHHHHHHHhh
Confidence 11368999999999999999999865
No 122
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.94 E-value=1.9e-26 Score=165.90 Aligned_cols=151 Identities=19% Similarity=0.213 Sum_probs=117.8
Q ss_pred eEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEEEe
Q 028595 6 KLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS 85 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 85 (207)
||+++|.+++| ||||+++++++. ...+.+|.+..+. .+.++ .+.+.+||+||++.+...+..+++++|++++|||
T Consensus 1 ki~iiG~~~~G-Kssli~~~~~~~-~~~~~~t~~~~~~-~~~~~--~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D 75 (158)
T cd00878 1 RILILGLDGAG-KTTILYKLKLGE-VVTTIPTIGFNVE-TVEYK--NVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVD 75 (158)
T ss_pred CEEEEcCCCCC-HHHHHHHHhcCC-CCCCCCCcCcceE-EEEEC--CEEEEEEECCCChhhHHHHHHHhccCCEEEEEEE
Confidence 79999999999 999999999988 4456677765442 23333 4789999999999999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhcC--CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHh----CCcEEEEecc
Q 028595 86 LVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI----GASYYIECSS 159 (207)
Q Consensus 86 ~~~~~s~~~~~~~~~~~i~~~~--~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~----~~~~~~e~Sa 159 (207)
+++++++..+ ..|+..+.... ++.|+++++||+|+.... ..++........ ...+++++||
T Consensus 76 ~~~~~~~~~~-~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~Sa 142 (158)
T cd00878 76 SSDRERIEEA-KEELHKLLNEEELKGVPLLIFANKQDLPGAL------------SVSELIEKLGLEKILGRRWHIQPCSA 142 (158)
T ss_pred CCCHHHHHHH-HHHHHHHHhCcccCCCcEEEEeeccCCcccc------------CHHHHHHhhChhhccCCcEEEEEeeC
Confidence 9999999998 55555544332 589999999999987643 223333332211 1237999999
Q ss_pred CCCCCHHHHHHHHHH
Q 028595 160 KTQQNVKAVFDAAIK 174 (207)
Q Consensus 160 ~~~~~i~~~f~~i~~ 174 (207)
++|.|++++|++|+.
T Consensus 143 ~~~~gv~~~~~~l~~ 157 (158)
T cd00878 143 VTGDGLDEGLDWLLQ 157 (158)
T ss_pred CCCCCHHHHHHHHhh
Confidence 999999999999875
No 123
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.94 E-value=2.4e-26 Score=166.83 Aligned_cols=152 Identities=17% Similarity=0.231 Sum_probs=116.8
Q ss_pred eEEEEecccccceeeeeeeccCCCC------CccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcE
Q 028595 6 KLACLFATQVTSFLLYVLSVSGRSS------IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADV 79 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~~~~------~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~ 79 (207)
+|+++|.+++| ||||++++.+... ...+.||.+..+. .+..+ ...+.+|||||++.+..++..+++++|+
T Consensus 1 ~i~~vG~~~~G-KstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~-~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 76 (167)
T cd04160 1 SVLILGLDNAG-KTTFLEQLKTLFSKYKGLPPSKITPTVGLNIG-TIEVG--NARLKFWDLGGQESLRSLWDKYYAECHA 76 (167)
T ss_pred CEEEEecCCCC-HHHHHHHHhhhcccccCCcccccCCccccceE-EEEEC--CEEEEEEECCCChhhHHHHHHHhCCCCE
Confidence 58999999999 9999999975422 2345666665542 33444 4788999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhcC--CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHh------CC
Q 028595 80 FVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI------GA 151 (207)
Q Consensus 80 ~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~------~~ 151 (207)
+++|+|+++++++... ..|+..+.+.. .+.|+++++||+|+.+.. ..++...+.+.. ..
T Consensus 77 ~v~vvd~~~~~~~~~~-~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~------------~~~~~~~~~~~~~~~~~~~~ 143 (167)
T cd04160 77 IIYVIDSTDRERFEES-KSALEKVLRNEALEGVPLLILANKQDLPDAL------------SVEEIKEVFQDKAEEIGRRD 143 (167)
T ss_pred EEEEEECchHHHHHHH-HHHHHHHHhChhhcCCCEEEEEEccccccCC------------CHHHHHHHhccccccccCCc
Confidence 9999999999998888 55655554322 579999999999986542 444455554432 12
Q ss_pred cEEEEeccCCCCCHHHHHHHHHH
Q 028595 152 SYYIECSSKTQQNVKAVFDAAIK 174 (207)
Q Consensus 152 ~~~~e~Sa~~~~~i~~~f~~i~~ 174 (207)
.+++++||++|.|++++|++|.+
T Consensus 144 ~~~~~~Sa~~g~gv~e~~~~l~~ 166 (167)
T cd04160 144 CLVLPVSALEGTGVREGIEWLVE 166 (167)
T ss_pred eEEEEeeCCCCcCHHHHHHHHhc
Confidence 37999999999999999999864
No 124
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.94 E-value=3.1e-26 Score=167.66 Aligned_cols=158 Identities=18% Similarity=0.229 Sum_probs=125.3
Q ss_pred ccceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEE
Q 028595 2 ELLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 81 (207)
Q Consensus 2 ~~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i 81 (207)
....||+++|.+++| ||||++++..+... .+.||.|... ..+..++ +.+.+||++|++.++.+|+.|++++|++|
T Consensus 12 ~~~~~ililGl~~sG-KTtll~~l~~~~~~-~~~pT~g~~~-~~i~~~~--~~~~~~d~gG~~~~~~~w~~y~~~~~~iI 86 (175)
T PF00025_consen 12 KKEIKILILGLDGSG-KTTLLNRLKNGEIS-ETIPTIGFNI-EEIKYKG--YSLTIWDLGGQESFRPLWKSYFQNADGII 86 (175)
T ss_dssp TSEEEEEEEESTTSS-HHHHHHHHHSSSEE-EEEEESSEEE-EEEEETT--EEEEEEEESSSGGGGGGGGGGHTTESEEE
T ss_pred CcEEEEEEECCCccc-hHHHHHHhhhcccc-ccCccccccc-ceeeeCc--EEEEEEeccccccccccceeeccccceeE
Confidence 356899999999999 99999999887643 4778877543 3444455 67899999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhC-----CcEEE
Q 028595 82 LAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG-----ASYYI 155 (207)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-----~~~~~ 155 (207)
||+|.++.+.+.+....+...+.... .+.|++|++||.|+.+.. ..++......... ....+
T Consensus 87 fVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~------------~~~~i~~~l~l~~l~~~~~~~v~ 154 (175)
T PF00025_consen 87 FVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAM------------SEEEIKEYLGLEKLKNKRPWSVF 154 (175)
T ss_dssp EEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSS------------THHHHHHHTTGGGTTSSSCEEEE
T ss_pred EEEecccceeecccccchhhhcchhhcccceEEEEeccccccCcc------------hhhHHHhhhhhhhcccCCceEEE
Confidence 99999999999998555555555433 589999999999987643 4444444333221 12577
Q ss_pred EeccCCCCCHHHHHHHHHHHH
Q 028595 156 ECSSKTQQNVKAVFDAAIKVV 176 (207)
Q Consensus 156 e~Sa~~~~~i~~~f~~i~~~~ 176 (207)
.|||.+|+|+.+.|+||.+++
T Consensus 155 ~~sa~~g~Gv~e~l~WL~~~~ 175 (175)
T PF00025_consen 155 SCSAKTGEGVDEGLEWLIEQI 175 (175)
T ss_dssp EEBTTTTBTHHHHHHHHHHHH
T ss_pred eeeccCCcCHHHHHHHHHhcC
Confidence 899999999999999999875
No 125
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.94 E-value=4.3e-26 Score=167.35 Aligned_cols=156 Identities=14% Similarity=0.138 Sum_probs=117.0
Q ss_pred eeEEEEecccccceeeeeeeccCCC-------CCccccCce------eeeee-eEEEE-----CCeEEEEEEEeCCCCcc
Q 028595 5 AKLACLFATQVTSFLLYVLSVSGRS-------SIWDYIPTV------FDNFS-ANVVA-----EGTTVNLGLWDTAGQED 65 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~~~-------~~~~~~~t~------~~~~~-~~~~~-----~~~~~~l~i~D~~G~~~ 65 (207)
.+|+++|..++| ||||+++|++.. +...+.++. +.++. ..+.+ ++..+.+.+|||||++.
T Consensus 1 rni~~vG~~~~G-KssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~ 79 (179)
T cd01890 1 RNFSIIAHIDHG-KSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVD 79 (179)
T ss_pred CcEEEEeecCCC-HHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChh
Confidence 379999999999 999999998632 222333332 22332 12222 66788999999999999
Q ss_pred ccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHH
Q 028595 66 YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEEL 145 (207)
Q Consensus 66 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~ 145 (207)
+...+..+++++|++|+|||+++..+.+.. ..|..... .++|+++|+||+|+.+.. ..+..+++
T Consensus 80 ~~~~~~~~~~~ad~~i~v~D~~~~~~~~~~-~~~~~~~~---~~~~iiiv~NK~Dl~~~~------------~~~~~~~~ 143 (179)
T cd01890 80 FSYEVSRSLAACEGALLLVDATQGVEAQTL-ANFYLALE---NNLEIIPVINKIDLPSAD------------PERVKQQI 143 (179)
T ss_pred hHHHHHHHHHhcCeEEEEEECCCCccHhhH-HHHHHHHH---cCCCEEEEEECCCCCcCC------------HHHHHHHH
Confidence 999999999999999999999998777665 44543332 378999999999986432 23344566
Q ss_pred HHHhCCc--EEEEeccCCCCCHHHHHHHHHHHHh
Q 028595 146 RKQIGAS--YYIECSSKTQQNVKAVFDAAIKVVI 177 (207)
Q Consensus 146 ~~~~~~~--~~~e~Sa~~~~~i~~~f~~i~~~~~ 177 (207)
++.+++. +++++||++|.|++++|+++.+.+.
T Consensus 144 ~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~ 177 (179)
T cd01890 144 EDVLGLDPSEAILVSAKTGLGVEDLLEAIVERIP 177 (179)
T ss_pred HHHhCCCcccEEEeeccCCCCHHHHHHHHHhhCC
Confidence 7777652 4899999999999999999998764
No 126
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.93 E-value=1.3e-25 Score=165.76 Aligned_cols=154 Identities=13% Similarity=0.112 Sum_probs=118.2
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEE
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA 83 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v 83 (207)
..||+++|.+++| ||||++++.++.+. .+.||.+... ..+.++ .+.+.+||+||++.++.++..++.++|++++|
T Consensus 17 ~~~i~ivG~~~~G-KTsli~~l~~~~~~-~~~~t~~~~~-~~~~~~--~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~v 91 (184)
T smart00178 17 HAKILFLGLDNAG-KTTLLHMLKNDRLA-QHQPTQHPTS-EELAIG--NIKFTTFDLGGHQQARRLWKDYFPEVNGIVYL 91 (184)
T ss_pred cCEEEEECCCCCC-HHHHHHHHhcCCCc-ccCCccccce-EEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEEEE
Confidence 5799999999999 99999999988754 3456665432 233444 37789999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhc-C-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHh-----------C
Q 028595 84 FSLVSRASYENVLKKWIPELQHY-S-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI-----------G 150 (207)
Q Consensus 84 ~d~~~~~s~~~~~~~~~~~i~~~-~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-----------~ 150 (207)
+|+++++++... ..++..+.+. . .+.|+++++||+|+.... ..++..+..... +
T Consensus 92 vD~~~~~~~~~~-~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~------------~~~~i~~~l~l~~~~~~~~~~~~~ 158 (184)
T smart00178 92 VDAYDKERFAES-KRELDALLSDEELATVPFLILGNKIDAPYAA------------SEDELRYALGLTNTTGSKGKVGVR 158 (184)
T ss_pred EECCcHHHHHHH-HHHHHHHHcChhhcCCCEEEEEeCccccCCC------------CHHHHHHHcCCCcccccccccCCc
Confidence 999999999888 4454444332 2 579999999999986432 444444333211 2
Q ss_pred CcEEEEeccCCCCCHHHHHHHHHHH
Q 028595 151 ASYYIECSSKTQQNVKAVFDAAIKV 175 (207)
Q Consensus 151 ~~~~~e~Sa~~~~~i~~~f~~i~~~ 175 (207)
...++++||++++|+++++++|..+
T Consensus 159 ~~~i~~~Sa~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 159 PLEVFMCSVVRRMGYGEGFKWLSQY 183 (184)
T ss_pred eeEEEEeecccCCChHHHHHHHHhh
Confidence 2358899999999999999999765
No 127
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=1.5e-24 Score=153.96 Aligned_cols=159 Identities=13% Similarity=0.115 Sum_probs=127.4
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEE
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA 83 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v 83 (207)
..+|+++|-+++| |||+++++..+++... .||+|-..+. +.+. ++.+.+||.+||++++.+|++|+++++++|||
T Consensus 17 e~~IlmlGLD~AG-KTTILykLk~~E~vtt-vPTiGfnVE~-v~yk--n~~f~vWDvGGq~k~R~lW~~Y~~~t~~lIfV 91 (181)
T KOG0070|consen 17 EMRILMVGLDAAG-KTTILYKLKLGEIVTT-VPTIGFNVET-VEYK--NISFTVWDVGGQEKLRPLWKHYFQNTQGLIFV 91 (181)
T ss_pred eEEEEEEeccCCC-ceeeeEeeccCCcccC-CCccccceeE-EEEc--ceEEEEEecCCCcccccchhhhccCCcEEEEE
Confidence 5789999999999 9999999998886655 8999855433 3333 68999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHh---CCc-EEEEec
Q 028595 84 FSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI---GAS-YYIECS 158 (207)
Q Consensus 84 ~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~---~~~-~~~e~S 158 (207)
.|.+|++.+.++...+...+.+.. .+.|+++.+||.|++..-. ..+..+..... +.. .+..|+
T Consensus 92 vDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als------------~~ei~~~L~l~~l~~~~w~iq~~~ 159 (181)
T KOG0070|consen 92 VDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALS------------AAEITNKLGLHSLRSRNWHIQSTC 159 (181)
T ss_pred EeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccCC------------HHHHHhHhhhhccCCCCcEEeecc
Confidence 999999999999777777776654 5899999999999987653 22222222222 111 344699
Q ss_pred cCCCCCHHHHHHHHHHHHhCC
Q 028595 159 SKTQQNVKAVFDAAIKVVIKP 179 (207)
Q Consensus 159 a~~~~~i~~~f~~i~~~~~~~ 179 (207)
|.+|+|+.+.++++...+...
T Consensus 160 a~~G~GL~egl~wl~~~~~~~ 180 (181)
T KOG0070|consen 160 AISGEGLYEGLDWLSNNLKKR 180 (181)
T ss_pred ccccccHHHHHHHHHHHHhcc
Confidence 999999999999999887543
No 128
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.93 E-value=4.7e-25 Score=152.82 Aligned_cols=163 Identities=16% Similarity=0.167 Sum_probs=129.5
Q ss_pred cceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEE
Q 028595 3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 82 (207)
Q Consensus 3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~ 82 (207)
....|.++|.+|+| |||++++|.+.. .+...||.|-. -+.+.++ .+++++||++||...++.|++||..+|+.|+
T Consensus 15 rE~riLiLGLdNsG-KTti~~kl~~~~-~~~i~pt~gf~-Iktl~~~--~~~L~iwDvGGq~~lr~~W~nYfestdglIw 89 (185)
T KOG0073|consen 15 REVRILILGLDNSG-KTTIVKKLLGED-TDTISPTLGFQ-IKTLEYK--GYTLNIWDVGGQKTLRSYWKNYFESTDGLIW 89 (185)
T ss_pred heeEEEEEecCCCC-chhHHHHhcCCC-ccccCCcccee-eEEEEec--ceEEEEEEcCCcchhHHHHHHhhhccCeEEE
Confidence 46789999999999 999999998776 55667777633 2234444 4889999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCccc-CHHHHHHHHHHhCCcEEEEeccC
Q 028595 83 AFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPV-TTAQGEELRKQIGASYYIECSSK 160 (207)
Q Consensus 83 v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~~~~~~e~Sa~ 160 (207)
|+|.+|+..+++....+...+.... .+.|+++++||.|++..-.. ..+ ..-+.+.++++..+ +.+.|||.
T Consensus 90 vvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~-------~~i~~~~~L~~l~ks~~~-~l~~cs~~ 161 (185)
T KOG0073|consen 90 VVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSL-------EEISKALDLEELAKSHHW-RLVKCSAV 161 (185)
T ss_pred EEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccccCH-------HHHHHhhCHHHhccccCc-eEEEEecc
Confidence 9999999999998665655555443 68999999999999743211 000 11235556666777 89999999
Q ss_pred CCCCHHHHHHHHHHHHhC
Q 028595 161 TQQNVKAVFDAAIKVVIK 178 (207)
Q Consensus 161 ~~~~i~~~f~~i~~~~~~ 178 (207)
+|+++.+.+.|++..+..
T Consensus 162 tge~l~~gidWL~~~l~~ 179 (185)
T KOG0073|consen 162 TGEDLLEGIDWLCDDLMS 179 (185)
T ss_pred ccccHHHHHHHHHHHHHH
Confidence 999999999999998876
No 129
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.93 E-value=4.1e-25 Score=158.37 Aligned_cols=150 Identities=25% Similarity=0.291 Sum_probs=117.8
Q ss_pred EEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEEEeC
Q 028595 7 LACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSL 86 (207)
Q Consensus 7 i~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~ 86 (207)
|+++|.+++| ||||++++.+..+...+.||.+..+.. +..++ +.+.+||+||++.++.++..++.++|++++|+|+
T Consensus 2 i~i~G~~~~G-Kssl~~~l~~~~~~~~~~~t~~~~~~~-~~~~~--~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~ 77 (159)
T cd04159 2 ITLVGLQNSG-KTTLVNVIAGGQFSEDTIPTVGFNMRK-VTKGN--VTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDA 77 (159)
T ss_pred EEEEcCCCCC-HHHHHHHHccCCCCcCccCCCCcceEE-EEECC--EEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEEC
Confidence 7999999999 999999999999998999998766542 33333 7899999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHhhc-C-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHH-----HHhCCcEEEEecc
Q 028595 87 VSRASYENVLKKWIPELQHY-S-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELR-----KQIGASYYIECSS 159 (207)
Q Consensus 87 ~~~~s~~~~~~~~~~~i~~~-~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~~~~~~~~e~Sa 159 (207)
++.+++... ..|+..+... . +++|+++++||.|+.+... ..+..... ...+. +++++||
T Consensus 78 ~~~~~~~~~-~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~------------~~~~~~~~~~~~~~~~~~-~~~~~Sa 143 (159)
T cd04159 78 ADRTALEAA-KNELHDLLEKPSLEGIPLLVLGNKNDLPGALS------------VDELIEQMNLKSITDREV-SCYSISC 143 (159)
T ss_pred CCHHHHHHH-HHHHHHHHcChhhcCCCEEEEEeCccccCCcC------------HHHHHHHhCcccccCCce-EEEEEEe
Confidence 999998887 4444444322 2 5789999999999865432 22221111 11223 7899999
Q ss_pred CCCCCHHHHHHHHHH
Q 028595 160 KTQQNVKAVFDAAIK 174 (207)
Q Consensus 160 ~~~~~i~~~f~~i~~ 174 (207)
+++.|++++|+++++
T Consensus 144 ~~~~gi~~l~~~l~~ 158 (159)
T cd04159 144 KEKTNIDIVLDWLIK 158 (159)
T ss_pred ccCCChHHHHHHHhh
Confidence 999999999999875
No 130
>KOG1673 consensus Ras GTPases [General function prediction only]
Probab=99.93 E-value=1.3e-24 Score=149.42 Aligned_cols=165 Identities=22% Similarity=0.379 Sum_probs=146.6
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEE
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 82 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~ 82 (207)
..||.++|+++.| ||||+-.+.++.+.+++..+.|..+ .+.+.+.|..+.+.|||.+|++++..+.+...+++-+++|
T Consensus 20 slkv~llGD~qiG-KTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIlF 98 (205)
T KOG1673|consen 20 SLKVGLLGDAQIG-KTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGGQREFINMLPIACKDSVAILF 98 (205)
T ss_pred EEEEEeecccccC-ceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCCcHhhhccCceeecCcEEEEE
Confidence 5799999999999 9999999999999999999999998 6689999999999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcc----cCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEec
Q 028595 83 AFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLR----EDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECS 158 (207)
Q Consensus 83 v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~S 158 (207)
+||++.++++..+ ..|+.+.+..+...--++||+|.|+. ++.++ -...+++.+++.++. +.+.+|
T Consensus 99 mFDLt~r~TLnSi-~~WY~QAr~~NktAiPilvGTKyD~fi~lp~e~Q~---------~I~~qar~YAk~mnA-sL~F~S 167 (205)
T KOG1673|consen 99 MFDLTRRSTLNSI-KEWYRQARGLNKTAIPILVGTKYDLFIDLPPELQE---------TISRQARKYAKVMNA-SLFFCS 167 (205)
T ss_pred EEecCchHHHHHH-HHHHHHHhccCCccceEEeccchHhhhcCCHHHHH---------HHHHHHHHHHHHhCC-cEEEee
Confidence 9999999999999 89999998887655557899999953 22222 134678999999998 999999
Q ss_pred cCCCCCHHHHHHHHHHHHhCCC
Q 028595 159 SKTQQNVKAVFDAAIKVVIKPP 180 (207)
Q Consensus 159 a~~~~~i~~~f~~i~~~~~~~~ 180 (207)
+....|++++|..+..++.+-+
T Consensus 168 ts~sINv~KIFK~vlAklFnL~ 189 (205)
T KOG1673|consen 168 TSHSINVQKIFKIVLAKLFNLP 189 (205)
T ss_pred ccccccHHHHHHHHHHHHhCCc
Confidence 9999999999999999987654
No 131
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.93 E-value=6.4e-25 Score=166.20 Aligned_cols=175 Identities=26% Similarity=0.380 Sum_probs=139.2
Q ss_pred eeEEEEecccccceeeeeeeccCCCCCccccCceeeeeee-EEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEE
Q 028595 5 AKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSA-NVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA 83 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v 83 (207)
+||+++|..++| ||||+++|..+.+...+.+|++..+.. .....+..+.+.+|||+|++.++.++..|+.+++++++|
T Consensus 6 ~kivv~G~~g~G-KTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~ 84 (219)
T COG1100 6 FKIVVLGDGGVG-KTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIV 84 (219)
T ss_pred EEEEEEcCCCcc-HHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEE
Confidence 799999999999 999999999999999999999887755 444444588999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCC--cccCHHHHHHHHHHh---CCcEEEEe
Q 028595 84 FSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGL--VPVTTAQGEELRKQI---GASYYIEC 157 (207)
Q Consensus 84 ~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~---~~~~~~e~ 157 (207)
||.++..++.++...|...+.... .+.|+++++||+|+............. +..........+... .. .++++
T Consensus 85 ~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 163 (219)
T COG1100 85 YDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANP-ALLET 163 (219)
T ss_pred EecccchhhhHHHHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhccc-ceeEe
Confidence 999998888778799999998877 479999999999998764310000000 011233333333322 33 48999
Q ss_pred ccC--CCCCHHHHHHHHHHHHhCCCc
Q 028595 158 SSK--TQQNVKAVFDAAIKVVIKPPQ 181 (207)
Q Consensus 158 Sa~--~~~~i~~~f~~i~~~~~~~~~ 181 (207)
|++ ++.+++++|..+++.+.....
T Consensus 164 s~~~~~~~~v~~~~~~~~~~~~~~~~ 189 (219)
T COG1100 164 SAKSLTGPNVNELFKELLRKLLEEIE 189 (219)
T ss_pred ecccCCCcCHHHHHHHHHHHHHHhhh
Confidence 999 999999999999999976543
No 132
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.93 E-value=7.7e-26 Score=160.04 Aligned_cols=136 Identities=24% Similarity=0.215 Sum_probs=105.1
Q ss_pred eeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCc-----cccccccceecCCcE
Q 028595 5 AKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQE-----DYNRLRPLSYRGADV 79 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~-----~~~~~~~~~~~~~d~ 79 (207)
.||+++|.+++| ||||+++|.++.+ .+.+|.+..+. -.+|||||+. .+..+.. .++++|+
T Consensus 1 ~kv~liG~~~vG-KSsL~~~l~~~~~--~~~~t~~~~~~-----------~~~iDt~G~~~~~~~~~~~~~~-~~~~ad~ 65 (142)
T TIGR02528 1 KRIMFIGSVGCG-KTTLTQALQGEEI--LYKKTQAVEYN-----------DGAIDTPGEYVENRRLYSALIV-TAADADV 65 (142)
T ss_pred CeEEEECCCCCC-HHHHHHHHcCCcc--ccccceeEEEc-----------CeeecCchhhhhhHHHHHHHHH-HhhcCCE
Confidence 389999999999 9999999998865 34555543321 1689999983 3444433 4789999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEecc
Q 028595 80 FVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSS 159 (207)
Q Consensus 80 ~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa 159 (207)
+++|||++++.++... .|...+ ..|+++|+||+|+.+.. ...++++++++..+..+++++||
T Consensus 66 vilv~d~~~~~s~~~~--~~~~~~-----~~p~ilv~NK~Dl~~~~-----------~~~~~~~~~~~~~~~~~~~~~Sa 127 (142)
T TIGR02528 66 IALVQSATDPESRFPP--GFASIF-----VKPVIGLVTKIDLAEAD-----------VDIERAKELLETAGAEPIFEISS 127 (142)
T ss_pred EEEEecCCCCCcCCCh--hHHHhc-----cCCeEEEEEeeccCCcc-----------cCHHHHHHHHHHcCCCcEEEEec
Confidence 9999999999998653 454432 34999999999986532 25677888888887668999999
Q ss_pred CCCCCHHHHHHHHH
Q 028595 160 KTQQNVKAVFDAAI 173 (207)
Q Consensus 160 ~~~~~i~~~f~~i~ 173 (207)
++|.|++++|+++.
T Consensus 128 ~~~~gi~~l~~~l~ 141 (142)
T TIGR02528 128 VDEQGLEALVDYLN 141 (142)
T ss_pred CCCCCHHHHHHHHh
Confidence 99999999999874
No 133
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.92 E-value=3.3e-24 Score=146.05 Aligned_cols=155 Identities=21% Similarity=0.247 Sum_probs=129.7
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEE
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA 83 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v 83 (207)
+..+.++|-.++| ||||+|.+..+.+..+..||.|-+. ..++..++.+.+||.|||.+++++|+.|+++++++++|
T Consensus 20 emel~lvGLq~sG-Ktt~Vn~ia~g~~~edmiptvGfnm---rk~tkgnvtiklwD~gGq~rfrsmWerycR~v~aivY~ 95 (186)
T KOG0075|consen 20 EMELSLVGLQNSG-KTTLVNVIARGQYLEDMIPTVGFNM---RKVTKGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYV 95 (186)
T ss_pred eeeEEEEeeccCC-cceEEEEEeeccchhhhccccccee---EEeccCceEEEEEecCCCccHHHHHHHHhhcCcEEEEE
Confidence 3467899999999 9999999999999999999998543 33445578999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCC-------cEEE
Q 028595 84 FSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA-------SYYI 155 (207)
Q Consensus 84 ~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-------~~~~ 155 (207)
.|+.+++.+.....++..++.+.. .++|+++.|||.|+++.-.. +.+..++|. .-+|
T Consensus 96 VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~---------------~~li~rmgL~sitdREvcC~ 160 (186)
T KOG0075|consen 96 VDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSK---------------IALIERMGLSSITDREVCCF 160 (186)
T ss_pred eecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCcccccH---------------HHHHHHhCccccccceEEEE
Confidence 999999988887677777776655 68999999999999765431 334444543 2478
Q ss_pred EeccCCCCCHHHHHHHHHHHHh
Q 028595 156 ECSSKTQQNVKAVFDAAIKVVI 177 (207)
Q Consensus 156 e~Sa~~~~~i~~~f~~i~~~~~ 177 (207)
.+|+++..|++.+.+|+++...
T Consensus 161 siScke~~Nid~~~~Wli~hsk 182 (186)
T KOG0075|consen 161 SISCKEKVNIDITLDWLIEHSK 182 (186)
T ss_pred EEEEcCCccHHHHHHHHHHHhh
Confidence 9999999999999999998754
No 134
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.92 E-value=2.6e-24 Score=156.30 Aligned_cols=155 Identities=18% Similarity=0.127 Sum_probs=106.7
Q ss_pred eEEEEecccccceeeeeeeccCCCCCcc-ccCceeeeeeeEEEECCeEEEEEEEeCCCCcccccccc---------ceec
Q 028595 6 KLACLFATQVTSFLLYVLSVSGRSSIWD-YIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRP---------LSYR 75 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~---------~~~~ 75 (207)
+|+++|.+++| ||||+++|++..+... +..+........+ +...+.+.+|||||+.......+ ....
T Consensus 2 ~i~~~G~~~~G-Kssli~~l~~~~~~~~~~~~~t~~~~~~~~--~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~ 78 (168)
T cd01897 2 TLVIAGYPNVG-KSSLVNKLTRAKPEVAPYPFTTKSLFVGHF--DYKYLRWQVIDTPGLLDRPLEERNTIEMQAITALAH 78 (168)
T ss_pred eEEEEcCCCCC-HHHHHHHHhcCCCccCCCCCcccceeEEEE--ccCceEEEEEECCCcCCccccCCchHHHHHHHHHHh
Confidence 79999999999 9999999998876422 2111111111112 22347899999999843211000 0112
Q ss_pred CCcEEEEEEeCCChhhH--HHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcE
Q 028595 76 GADVFVLAFSLVSRASY--ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASY 153 (207)
Q Consensus 76 ~~d~~i~v~d~~~~~s~--~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 153 (207)
.+|++++|+|+++..++ ... ..|+..+....++.|+++|+||.|+.+.... ...+++++..+. +
T Consensus 79 ~~d~~l~v~d~~~~~~~~~~~~-~~~~~~l~~~~~~~pvilv~NK~Dl~~~~~~------------~~~~~~~~~~~~-~ 144 (168)
T cd01897 79 LRAAVLFLFDPSETCGYSLEEQ-LSLFEEIKPLFKNKPVIVVLNKIDLLTFEDL------------SEIEEEEELEGE-E 144 (168)
T ss_pred ccCcEEEEEeCCcccccchHHH-HHHHHHHHhhcCcCCeEEEEEccccCchhhH------------HHHHHhhhhccC-c
Confidence 36899999999987653 444 5677777655468999999999999765431 224555555555 8
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHh
Q 028595 154 YIECSSKTQQNVKAVFDAAIKVVI 177 (207)
Q Consensus 154 ~~e~Sa~~~~~i~~~f~~i~~~~~ 177 (207)
++++||++|.|++++|+++.+.++
T Consensus 145 ~~~~Sa~~~~gi~~l~~~l~~~~~ 168 (168)
T cd01897 145 VLKISTLTEEGVDEVKNKACELLL 168 (168)
T ss_pred eEEEEecccCCHHHHHHHHHHHhC
Confidence 999999999999999999998763
No 135
>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]
Probab=99.92 E-value=3.2e-24 Score=147.12 Aligned_cols=170 Identities=21% Similarity=0.232 Sum_probs=145.1
Q ss_pred CccceeEEEEecccccceeeeeeeccCCCC--CccccCceeeeeeeEEEE-CCeEEEEEEEeCCCCccc-cccccceecC
Q 028595 1 MELLAKLACLFATQVTSFLLYVLSVSGRSS--IWDYIPTVFDNFSANVVA-EGTTVNLGLWDTAGQEDY-NRLRPLSYRG 76 (207)
Q Consensus 1 m~~~~ki~iiG~~~~GgKssli~~l~~~~~--~~~~~~t~~~~~~~~~~~-~~~~~~l~i~D~~G~~~~-~~~~~~~~~~ 76 (207)
|..-.||+++|..+|| ||+++.++..++. ..++.||+.+.|...+.- .|..-.+.++||.|-..+ ..+-++|++-
T Consensus 6 mGk~~kVvVcG~k~VG-KTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~~~eLprhy~q~ 84 (198)
T KOG3883|consen 6 MGKVCKVVVCGMKSVG-KTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGGQQELPRHYFQF 84 (198)
T ss_pred hCcceEEEEECCcccc-HHHHHHHHHhccCCCCCccccchhhheeEeeecCCChhheEEEeecccccCchhhhhHhHhcc
Confidence 5667899999999999 9999999987764 356889999988665544 345678999999997666 5678899999
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHHhhcC--CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEE
Q 028595 77 ADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYY 154 (207)
Q Consensus 77 ~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 154 (207)
+|++++|||..|++||+.+ .-+...|.+.. ..+|+++.+||+|+.+..++ ..+-++.||++-.. ..
T Consensus 85 aDafVLVYs~~d~eSf~rv-~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~v----------d~d~A~~Wa~rEkv-kl 152 (198)
T KOG3883|consen 85 ADAFVLVYSPMDPESFQRV-ELLKKEIDKHKDKKEVPIVVLANKRDRAEPREV----------DMDVAQIWAKREKV-KL 152 (198)
T ss_pred CceEEEEecCCCHHHHHHH-HHHHHHHhhccccccccEEEEechhhcccchhc----------CHHHHHHHHhhhhe-eE
Confidence 9999999999999999988 66666776544 47999999999999887774 88999999999998 99
Q ss_pred EEeccCCCCCHHHHHHHHHHHHhCCCcch
Q 028595 155 IECSSKTQQNVKAVFDAAIKVVIKPPQKQ 183 (207)
Q Consensus 155 ~e~Sa~~~~~i~~~f~~i~~~~~~~~~~~ 183 (207)
++++|++..++-+.|..+...+.+++.+.
T Consensus 153 ~eVta~dR~sL~epf~~l~~rl~~pqskS 181 (198)
T KOG3883|consen 153 WEVTAMDRPSLYEPFTYLASRLHQPQSKS 181 (198)
T ss_pred EEEEeccchhhhhHHHHHHHhccCCcccc
Confidence 99999999999999999999998776543
No 136
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.91 E-value=7.6e-24 Score=151.34 Aligned_cols=156 Identities=29% Similarity=0.419 Sum_probs=126.3
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeee-EEEECCeEEEEEEEeCCCCccccccccceecCCcEEEE
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSA-NVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 82 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~ 82 (207)
.+||+++|.+++| ||||++++..+.+...+.++.+..+.. .+..++..+.+.+||+||+..+..++..+.+.+++++.
T Consensus 1 ~~ki~~~G~~~~G-Kstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~ 79 (161)
T TIGR00231 1 EIKIVIVGDPNVG-KSTLLNRLLGNKFITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLR 79 (161)
T ss_pred CeEEEEECCCCCC-HHHHHHHHhCCCCcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcccchHHHHHHHhhhhEEEE
Confidence 3699999999999 999999999998777777888777644 46777777899999999999999988888999999999
Q ss_pred EEeCCCh-hhHHHHHHHHHHHHhhcCC-CCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccC
Q 028595 83 AFSLVSR-ASYENVLKKWIPELQHYSP-GVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK 160 (207)
Q Consensus 83 v~d~~~~-~s~~~~~~~~~~~i~~~~~-~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 160 (207)
++|+... .++......|...+..... +.|+++++||.|+.... ............+..+++++||.
T Consensus 80 ~~d~~~~v~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~------------~~~~~~~~~~~~~~~~~~~~sa~ 147 (161)
T TIGR00231 80 VFDIVILVLDVEEILEKQTKEIIHHAESNVPIILVGNKIDLRDAK------------LKTHVAFLFAKLNGEPIIPLSAE 147 (161)
T ss_pred EEEEeeeehhhhhHhHHHHHHHHHhcccCCcEEEEEEcccCCcch------------hhHHHHHHHhhccCCceEEeecC
Confidence 9999888 7777764466666665554 89999999999996543 12333333444444589999999
Q ss_pred CCCCHHHHHHHH
Q 028595 161 TQQNVKAVFDAA 172 (207)
Q Consensus 161 ~~~~i~~~f~~i 172 (207)
++.|+.++|+++
T Consensus 148 ~~~gv~~~~~~l 159 (161)
T TIGR00231 148 TGKNIDSAFKIV 159 (161)
T ss_pred CCCCHHHHHHHh
Confidence 999999999986
No 137
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.91 E-value=3.7e-24 Score=155.68 Aligned_cols=155 Identities=16% Similarity=0.134 Sum_probs=109.7
Q ss_pred eEEEEecccccceeeeeeeccCCCCCc-cccCceeeeeeeEEEECCeEEEEEEEeCCCCc----ccccccccee---cCC
Q 028595 6 KLACLFATQVTSFLLYVLSVSGRSSIW-DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQE----DYNRLRPLSY---RGA 77 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~----~~~~~~~~~~---~~~ 77 (207)
.|+++|.+++| ||||++++.+..... .+..+........+..++ ...+.+|||||+. ....+...++ ..+
T Consensus 2 ~v~ivG~~~~G-KStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~~-~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~ 79 (170)
T cd01898 2 DVGLVGLPNAG-KSTLLSAISNAKPKIADYPFTTLVPNLGVVRVDD-GRSFVVADIPGLIEGASEGKGLGHRFLRHIERT 79 (170)
T ss_pred CeEEECCCCCC-HHHHHHHHhcCCccccCCCccccCCcceEEEcCC-CCeEEEEecCcccCcccccCCchHHHHHHHHhC
Confidence 68999999999 999999998765321 111111111111223333 2478999999963 2223333433 459
Q ss_pred cEEEEEEeCCCh-hhHHHHHHHHHHHHhhcC---CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHh-CCc
Q 028595 78 DVFVLAFSLVSR-ASYENVLKKWIPELQHYS---PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI-GAS 152 (207)
Q Consensus 78 d~~i~v~d~~~~-~s~~~~~~~~~~~i~~~~---~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~ 152 (207)
|++++|+|++++ ++++.+ ..|.+.+.... ...|+++|+||+|+.+... ..+..+.+.... +.
T Consensus 80 d~vi~v~D~~~~~~~~~~~-~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~-----------~~~~~~~~~~~~~~~- 146 (170)
T cd01898 80 RLLLHVIDLSGDDDPVEDY-KTIRNELELYNPELLEKPRIVVLNKIDLLDEEE-----------LFELLKELLKELWGK- 146 (170)
T ss_pred CEEEEEEecCCCCCHHHHH-HHHHHHHHHhCccccccccEEEEEchhcCCchh-----------hHHHHHHHHhhCCCC-
Confidence 999999999999 788888 78888876654 3689999999999866543 334455555553 54
Q ss_pred EEEEeccCCCCCHHHHHHHHHHH
Q 028595 153 YYIECSSKTQQNVKAVFDAAIKV 175 (207)
Q Consensus 153 ~~~e~Sa~~~~~i~~~f~~i~~~ 175 (207)
+++++||+++.|++++|+++.+.
T Consensus 147 ~~~~~Sa~~~~gi~~l~~~i~~~ 169 (170)
T cd01898 147 PVFPISALTGEGLDELLRKLAEL 169 (170)
T ss_pred CEEEEecCCCCCHHHHHHHHHhh
Confidence 89999999999999999999865
No 138
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.91 E-value=1.2e-23 Score=153.61 Aligned_cols=150 Identities=19% Similarity=0.268 Sum_probs=114.3
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEE
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA 83 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v 83 (207)
.++|+++|.+++| ||||++++.+..+. .+.||.+..+ ..+..++ ..+.+||++|+..+...+..+++++|++++|
T Consensus 14 ~~~v~i~G~~g~G-KStLl~~l~~~~~~-~~~~t~g~~~-~~i~~~~--~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v 88 (173)
T cd04155 14 EPRILILGLDNAG-KTTILKQLASEDIS-HITPTQGFNI-KTVQSDG--FKLNVWDIGGQRAIRPYWRNYFENTDCLIYV 88 (173)
T ss_pred ccEEEEEccCCCC-HHHHHHHHhcCCCc-ccCCCCCcce-EEEEECC--EEEEEEECCCCHHHHHHHHHHhcCCCEEEEE
Confidence 5789999999999 99999999987653 4567766433 2344444 6789999999998888888899999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcC--CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCC-------cEE
Q 028595 84 FSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA-------SYY 154 (207)
Q Consensus 84 ~d~~~~~s~~~~~~~~~~~i~~~~--~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-------~~~ 154 (207)
+|+++..++... ..++..+.... .++|+++++||.|+.+.. .. +.+.+.++. .++
T Consensus 89 ~D~~~~~~~~~~-~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~------------~~---~~i~~~l~~~~~~~~~~~~ 152 (173)
T cd04155 89 IDSADKKRLEEA-GAELVELLEEEKLAGVPVLVFANKQDLATAA------------PA---EEIAEALNLHDLRDRTWHI 152 (173)
T ss_pred EeCCCHHHHHHH-HHHHHHHHhChhhcCCCEEEEEECCCCccCC------------CH---HHHHHHcCCcccCCCeEEE
Confidence 999999999887 44444433222 479999999999986533 11 223333332 146
Q ss_pred EEeccCCCCCHHHHHHHHHH
Q 028595 155 IECSSKTQQNVKAVFDAAIK 174 (207)
Q Consensus 155 ~e~Sa~~~~~i~~~f~~i~~ 174 (207)
+++||++|+|++++|++|++
T Consensus 153 ~~~Sa~~~~gi~~~~~~l~~ 172 (173)
T cd04155 153 QACSAKTGEGLQEGMNWVCK 172 (173)
T ss_pred EEeECCCCCCHHHHHHHHhc
Confidence 79999999999999999975
No 139
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.90 E-value=2.4e-23 Score=150.30 Aligned_cols=152 Identities=14% Similarity=0.080 Sum_probs=103.4
Q ss_pred eEEEEecccccceeeeeeeccCCC---CCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEE
Q 028595 6 KLACLFATQVTSFLLYVLSVSGRS---SIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 81 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~~~---~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i 81 (207)
.|+++|.+++| ||||+++|++.. +...+.++.+... ...+..++ ...+.+|||||++++......++.++|+++
T Consensus 2 ~i~i~G~~~~G-Kssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii 79 (164)
T cd04171 2 IIGTAGHIDHG-KTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPS-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVL 79 (164)
T ss_pred EEEEEecCCCC-HHHHHHHHhCcccccchhhhccCceEEeeeEEEEecC-CcEEEEEECCChHHHHHHHHhhhhcCCEEE
Confidence 58999999999 999999998643 2223333332222 12333332 357899999999988776677888999999
Q ss_pred EEEeCCC---hhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHH---hCCcEEE
Q 028595 82 LAFSLVS---RASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ---IGASYYI 155 (207)
Q Consensus 82 ~v~d~~~---~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~---~~~~~~~ 155 (207)
+|+|+++ .++.+.+ . + +... ...|+++++||+|+.+.... ....++..++.+. .+. +++
T Consensus 80 ~V~d~~~~~~~~~~~~~-~-~---~~~~-~~~~~ilv~NK~Dl~~~~~~--------~~~~~~~~~~~~~~~~~~~-~~~ 144 (164)
T cd04171 80 LVVAADEGIMPQTREHL-E-I---LELL-GIKRGLVVLTKADLVDEDWL--------ELVEEEIRELLAGTFLADA-PIF 144 (164)
T ss_pred EEEECCCCccHhHHHHH-H-H---HHHh-CCCcEEEEEECccccCHHHH--------HHHHHHHHHHHHhcCcCCC-cEE
Confidence 9999987 4444433 1 2 2221 23499999999999654210 0022344444444 234 899
Q ss_pred EeccCCCCCHHHHHHHHHH
Q 028595 156 ECSSKTQQNVKAVFDAAIK 174 (207)
Q Consensus 156 e~Sa~~~~~i~~~f~~i~~ 174 (207)
++||+++.|++++|+.+..
T Consensus 145 ~~Sa~~~~~v~~l~~~l~~ 163 (164)
T cd04171 145 PVSAVTGEGIEELKEYLDE 163 (164)
T ss_pred EEeCCCCcCHHHHHHHHhh
Confidence 9999999999999998754
No 140
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.90 E-value=2.9e-23 Score=165.34 Aligned_cols=164 Identities=18% Similarity=0.157 Sum_probs=119.4
Q ss_pred cceeEEEEecccccceeeeeeeccCCCCC-ccccCceeeeeeeEEEECCeEEEEEEEeCCCCcc----ccccccc---ee
Q 028595 3 LLAKLACLFATQVTSFLLYVLSVSGRSSI-WDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED----YNRLRPL---SY 74 (207)
Q Consensus 3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~----~~~~~~~---~~ 74 (207)
....|++||.+++| ||||++++++.+.. ..|.-|+.......+.++ ....+.+||+||.-. ...+... ++
T Consensus 157 ~~adVglVG~PNaG-KSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~-~~~~~~i~D~PGli~ga~~~~gLg~~flrhi 234 (335)
T PRK12299 157 LLADVGLVGLPNAG-KSTLISAVSAAKPKIADYPFTTLHPNLGVVRVD-DYKSFVIADIPGLIEGASEGAGLGHRFLKHI 234 (335)
T ss_pred ccCCEEEEcCCCCC-HHHHHHHHHcCCCccCCCCCceeCceEEEEEeC-CCcEEEEEeCCCccCCCCccccHHHHHHHHh
Confidence 35679999999999 99999999976532 334333322222333332 234578999999632 2223333 45
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCC---CCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCC
Q 028595 75 RGADVFVLAFSLVSRASYENVLKKWIPELQHYSP---GVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA 151 (207)
Q Consensus 75 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~---~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 151 (207)
..++++++|+|+++.++++.+ ..|..++..+.+ ++|+++|+||+|+.+.... ..+..+.+++..+.
T Consensus 235 e~a~vlI~ViD~s~~~s~e~~-~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~----------~~~~~~~~~~~~~~ 303 (335)
T PRK12299 235 ERTRLLLHLVDIEAVDPVEDY-KTIRNELEKYSPELADKPRILVLNKIDLLDEEEE----------REKRAALELAALGG 303 (335)
T ss_pred hhcCEEEEEEcCCCCCCHHHH-HHHHHHHHHhhhhcccCCeEEEEECcccCCchhH----------HHHHHHHHHHhcCC
Confidence 679999999999998888888 789888877653 7899999999999765432 33445556666666
Q ss_pred cEEEEeccCCCCCHHHHHHHHHHHHhCCC
Q 028595 152 SYYIECSSKTQQNVKAVFDAAIKVVIKPP 180 (207)
Q Consensus 152 ~~~~e~Sa~~~~~i~~~f~~i~~~~~~~~ 180 (207)
+++++||++++|++++|+++.+.+...+
T Consensus 304 -~i~~iSAktg~GI~eL~~~L~~~l~~~~ 331 (335)
T PRK12299 304 -PVFLISAVTGEGLDELLRALWELLEEAR 331 (335)
T ss_pred -CEEEEEcCCCCCHHHHHHHHHHHHHhhh
Confidence 8999999999999999999998876543
No 141
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=2.9e-22 Score=135.59 Aligned_cols=158 Identities=14% Similarity=0.139 Sum_probs=125.7
Q ss_pred cceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEE
Q 028595 3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 82 (207)
Q Consensus 3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~ 82 (207)
+..+|+++|-..+| |||+++.++.+. .....||+|-.... + ..+++.+++||.+|+++.+.+|++||+++.++||
T Consensus 16 KE~~ilmlGLd~aG-KTtiLyKLkl~~-~~~~ipTvGFnvet-V--tykN~kfNvwdvGGqd~iRplWrhYy~gtqglIF 90 (180)
T KOG0071|consen 16 KEMRILMLGLDAAG-KTTILYKLKLGQ-SVTTIPTVGFNVET-V--TYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF 90 (180)
T ss_pred ccceEEEEecccCC-ceehhhHHhcCC-CcccccccceeEEE-E--EeeeeEEeeeeccCchhhhHHHHhhccCCceEEE
Confidence 35689999999999 999999998776 44567888744322 2 2357899999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHh---CCc-EEEEe
Q 028595 83 AFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI---GAS-YYIEC 157 (207)
Q Consensus 83 v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~---~~~-~~~e~ 157 (207)
|.|..+++..+++..++...|.+.- .+.|++|.+||.|++... ...+++.+.+.- +-. ....+
T Consensus 91 V~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~------------~pqei~d~leLe~~r~~~W~vqp~ 158 (180)
T KOG0071|consen 91 VVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAM------------KPQEIQDKLELERIRDRNWYVQPS 158 (180)
T ss_pred EEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCccccccc------------CHHHHHHHhccccccCCccEeecc
Confidence 9999999999999777777775543 589999999999998775 445555444322 111 34469
Q ss_pred ccCCCCCHHHHHHHHHHHHh
Q 028595 158 SSKTQQNVKAVFDAAIKVVI 177 (207)
Q Consensus 158 Sa~~~~~i~~~f~~i~~~~~ 177 (207)
||.+|+++.+.|.|+...+.
T Consensus 159 ~a~~gdgL~eglswlsnn~~ 178 (180)
T KOG0071|consen 159 CALSGDGLKEGLSWLSNNLK 178 (180)
T ss_pred ccccchhHHHHHHHHHhhcc
Confidence 99999999999999987653
No 142
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.89 E-value=6.3e-23 Score=153.73 Aligned_cols=152 Identities=16% Similarity=0.119 Sum_probs=108.8
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCCcc--ccCceeeeeeeEEEECCeEEEEEEEeCCCCccc---------cccccc
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSIWD--YIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY---------NRLRPL 72 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~---------~~~~~~ 72 (207)
..+|+++|.+++| ||||++++++..+... +.+|... ....+..++. ..+.+|||||.... .... .
T Consensus 41 ~~~I~iiG~~g~G-KStLl~~l~~~~~~~~~~~~~t~~~-~~~~~~~~~~-~~~~i~Dt~G~~~~~~~~~~~~~~~~~-~ 116 (204)
T cd01878 41 IPTVALVGYTNAG-KSTLFNALTGADVYAEDQLFATLDP-TTRRLRLPDG-REVLLTDTVGFIRDLPHQLVEAFRSTL-E 116 (204)
T ss_pred CCeEEEECCCCCC-HHHHHHHHhcchhccCCccceeccc-eeEEEEecCC-ceEEEeCCCccccCCCHHHHHHHHHHH-H
Confidence 4699999999999 9999999998864322 2233322 2223344442 36889999997332 1111 1
Q ss_pred eecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCC
Q 028595 73 SYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA 151 (207)
Q Consensus 73 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 151 (207)
.+.++|++++|+|++++.+.... ..|...+.... .++|+++|+||+|+.+.... . .++...+.
T Consensus 117 ~~~~~d~ii~v~D~~~~~~~~~~-~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~~------------~---~~~~~~~~ 180 (204)
T cd01878 117 EVAEADLLLHVVDASDPDYEEQI-ETVEKVLKELGAEDIPMILVLNKIDLLDDEEL------------E---ERLEAGRP 180 (204)
T ss_pred HHhcCCeEEEEEECCCCChhhHH-HHHHHHHHHcCcCCCCEEEEEEccccCChHHH------------H---HHhhcCCC
Confidence 35689999999999999888876 66777776544 47899999999999655421 1 33444444
Q ss_pred cEEEEeccCCCCCHHHHHHHHHHHH
Q 028595 152 SYYIECSSKTQQNVKAVFDAAIKVV 176 (207)
Q Consensus 152 ~~~~e~Sa~~~~~i~~~f~~i~~~~ 176 (207)
+++++||+++.|++++|++|.+.+
T Consensus 181 -~~~~~Sa~~~~gi~~l~~~L~~~~ 204 (204)
T cd01878 181 -DAVFISAKTGEGLDELLEAIEELL 204 (204)
T ss_pred -ceEEEEcCCCCCHHHHHHHHHhhC
Confidence 899999999999999999997653
No 143
>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=7.3e-23 Score=145.28 Aligned_cols=162 Identities=23% Similarity=0.326 Sum_probs=140.0
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCe-EEEEEEEeCCCCccccccccceecCCcEEEE
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGT-TVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 82 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~ 82 (207)
.+|++++|+-+.| ||++++++..+.|...|.+|+|......+..++. .+.+..|||+|+|.+..+...|+-.+.+.|+
T Consensus 10 ~fklvlvGdgg~g-Ktt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtagqEk~gglrdgyyI~~qcAii 88 (216)
T KOG0096|consen 10 TFKLVLVGDGGTG-KTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAII 88 (216)
T ss_pred eEEEEEecCCccc-ccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeecccceeecccccccEEecceeEE
Confidence 5789999999999 9999999999999999999999887665555554 5999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCCC
Q 028595 83 AFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQ 162 (207)
Q Consensus 83 v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~ 162 (207)
+||++.+-.+.++ ..|...+.+.+.++|+++.|||.|..... .....-.+-+..++ .|+++||+++
T Consensus 89 mFdVtsr~t~~n~-~rwhrd~~rv~~NiPiv~cGNKvDi~~r~------------~k~k~v~~~rkknl-~y~~iSaksn 154 (216)
T KOG0096|consen 89 MFDVTSRFTYKNV-PRWHRDLVRVRENIPIVLCGNKVDIKARK------------VKAKPVSFHRKKNL-QYYEISAKSN 154 (216)
T ss_pred Eeeeeehhhhhcc-hHHHHHHHHHhcCCCeeeeccceeccccc------------cccccceeeecccc-eeEEeecccc
Confidence 9999999999999 89999998888899999999999975543 12223345555666 8999999999
Q ss_pred CCHHHHHHHHHHHHhCCC
Q 028595 163 QNVKAVFDAAIKVVIKPP 180 (207)
Q Consensus 163 ~~i~~~f~~i~~~~~~~~ 180 (207)
.|++..|.++++++...+
T Consensus 155 ~NfekPFl~LarKl~G~p 172 (216)
T KOG0096|consen 155 YNFERPFLWLARKLTGDP 172 (216)
T ss_pred cccccchHHHhhhhcCCC
Confidence 999999999999987543
No 144
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.89 E-value=1.3e-22 Score=158.19 Aligned_cols=156 Identities=16% Similarity=0.079 Sum_probs=111.4
Q ss_pred eEEEEecccccceeeeeeeccCCCCCc--cccCceeeeeeeEEEECCeEEEEEEEeCCCCcccc-c-------cccceec
Q 028595 6 KLACLFATQVTSFLLYVLSVSGRSSIW--DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYN-R-------LRPLSYR 75 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~-~-------~~~~~~~ 75 (207)
+|+++|.+|+| ||||+|+|++.++.. ....|+..... .+...+ ..++.+|||||..... . ....++.
T Consensus 2 ~V~liG~pnvG-KSTLln~L~~~~~~~vs~~~~TTr~~i~-~i~~~~-~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~ 78 (270)
T TIGR00436 2 FVAILGRPNVG-KSTLLNQLHGQKISITSPKAQTTRNRIS-GIHTTG-ASQIIFIDTPGFHEKKHSLNRLMMKEARSAIG 78 (270)
T ss_pred EEEEECCCCCC-HHHHHHHHhCCcEeecCCCCCcccCcEE-EEEEcC-CcEEEEEECcCCCCCcchHHHHHHHHHHHHHh
Confidence 79999999999 999999999987542 23334333222 222222 3568999999975431 1 1235678
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEE
Q 028595 76 GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYI 155 (207)
Q Consensus 76 ~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 155 (207)
++|++++|+|+++..+.. ..++..+.. .+.|+++|+||+|+.+... ..+....++...+..+++
T Consensus 79 ~aDvvl~VvD~~~~~~~~---~~i~~~l~~--~~~p~ilV~NK~Dl~~~~~-----------~~~~~~~~~~~~~~~~v~ 142 (270)
T TIGR00436 79 GVDLILFVVDSDQWNGDG---EFVLTKLQN--LKRPVVLTRNKLDNKFKDK-----------LLPLIDKYAILEDFKDIV 142 (270)
T ss_pred hCCEEEEEEECCCCCchH---HHHHHHHHh--cCCCEEEEEECeeCCCHHH-----------HHHHHHHHHhhcCCCceE
Confidence 999999999999876664 234444443 3789999999999964332 334555666666655789
Q ss_pred EeccCCCCCHHHHHHHHHHHHhCCC
Q 028595 156 ECSSKTQQNVKAVFDAAIKVVIKPP 180 (207)
Q Consensus 156 e~Sa~~~~~i~~~f~~i~~~~~~~~ 180 (207)
++||++|.|++++++.+.+.+...+
T Consensus 143 ~iSA~~g~gi~~L~~~l~~~l~~~~ 167 (270)
T TIGR00436 143 PISALTGDNTSFLAAFIEVHLPEGP 167 (270)
T ss_pred EEecCCCCCHHHHHHHHHHhCCCCC
Confidence 9999999999999999999886543
No 145
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.89 E-value=2.4e-22 Score=144.29 Aligned_cols=147 Identities=14% Similarity=0.118 Sum_probs=108.3
Q ss_pred EEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCcccccc------ccceec--CCcE
Q 028595 9 CLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRL------RPLSYR--GADV 79 (207)
Q Consensus 9 iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~------~~~~~~--~~d~ 79 (207)
++|.+++| ||||++++++......+.++.+... ...+..++ ..+.+|||||++.+... +..++. ++|+
T Consensus 1 l~G~~~~G-Kssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~ 77 (158)
T cd01879 1 LVGNPNVG-KTTLFNALTGARQKVGNWPGVTVEKKEGRFKLGG--KEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDL 77 (158)
T ss_pred CCCCCCCC-HHHHHHHHhcCcccccCCCCcccccceEEEeeCC--eEEEEEECCCccccCCCChhHHHHHHHhcCCCCcE
Confidence 58999999 9999999998864433334433333 44566665 46899999999876643 455554 8999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEecc
Q 028595 80 FVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSS 159 (207)
Q Consensus 80 ~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa 159 (207)
+++|+|.++.++.. .+...+.. .++|+++++||+|+.+... .....+.+++.++. +++++||
T Consensus 78 vi~v~d~~~~~~~~----~~~~~~~~--~~~~~iiv~NK~Dl~~~~~-----------~~~~~~~~~~~~~~-~~~~iSa 139 (158)
T cd01879 78 IVNVVDATNLERNL----YLTLQLLE--LGLPVVVALNMIDEAEKRG-----------IKIDLDKLSELLGV-PVVPTSA 139 (158)
T ss_pred EEEEeeCCcchhHH----HHHHHHHH--cCCCEEEEEehhhhccccc-----------chhhHHHHHHhhCC-CeEEEEc
Confidence 99999999865533 23333333 2799999999999976543 22335677777887 8999999
Q ss_pred CCCCCHHHHHHHHHHHH
Q 028595 160 KTQQNVKAVFDAAIKVV 176 (207)
Q Consensus 160 ~~~~~i~~~f~~i~~~~ 176 (207)
.++.|+.++|+++.+.+
T Consensus 140 ~~~~~~~~l~~~l~~~~ 156 (158)
T cd01879 140 RKGEGIDELKDAIAELA 156 (158)
T ss_pred cCCCCHHHHHHHHHHHh
Confidence 99999999999998753
No 146
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.88 E-value=3.3e-22 Score=145.08 Aligned_cols=158 Identities=14% Similarity=0.131 Sum_probs=109.1
Q ss_pred eEEEEecccccceeeeeeeccCCCCCccccCceeeeee-eEEEEC-CeEEEEEEEeCCCCccccccccceecCCcEEEEE
Q 028595 6 KLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFS-ANVVAE-GTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA 83 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v 83 (207)
.|+++|.+++| ||||+++|..+.+...+.++....+. ..+..+ +....+.+|||||++.+..++..++..+|++++|
T Consensus 2 ~i~iiG~~~~G-Ktsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v 80 (168)
T cd01887 2 VVTVMGHVDHG-KTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTNMRARGASLTDIAILV 80 (168)
T ss_pred EEEEEecCCCC-HHHHHHHHHhcccccccCCCeEEeeccEEEecccCCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEE
Confidence 48999999999 99999999988876654444433332 233332 2357889999999999988888889999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHH----HhC-CcEEEEec
Q 028595 84 FSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRK----QIG-ASYYIECS 158 (207)
Q Consensus 84 ~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~----~~~-~~~~~e~S 158 (207)
+|+++....+.. ..+..+.. .+.|+++|+||+|+...... ...+....+.. ..+ ..+++++|
T Consensus 81 ~d~~~~~~~~~~--~~~~~~~~--~~~p~ivv~NK~Dl~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~S 147 (168)
T cd01887 81 VAADDGVMPQTI--EAIKLAKA--ANVPFIVALNKIDKPNANPE---------RVKNELSELGLQGEDEWGGDVQIVPTS 147 (168)
T ss_pred EECCCCccHHHH--HHHHHHHH--cCCCEEEEEEceecccccHH---------HHHHHHHHhhccccccccCcCcEEEee
Confidence 999985332222 12222332 37899999999998643210 01111222211 111 13789999
Q ss_pred cCCCCCHHHHHHHHHHHHh
Q 028595 159 SKTQQNVKAVFDAAIKVVI 177 (207)
Q Consensus 159 a~~~~~i~~~f~~i~~~~~ 177 (207)
|.+|+|++++|+++.+...
T Consensus 148 a~~~~gi~~l~~~l~~~~~ 166 (168)
T cd01887 148 AKTGEGIDDLLEAILLLAE 166 (168)
T ss_pred cccCCCHHHHHHHHHHhhh
Confidence 9999999999999987643
No 147
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.88 E-value=4.7e-22 Score=158.25 Aligned_cols=159 Identities=19% Similarity=0.179 Sum_probs=115.4
Q ss_pred cceeEEEEecccccceeeeeeeccCCCC-CccccCceeeeeeeEEEECCeEEEEEEEeCCCCccc----cccccce---e
Q 028595 3 LLAKLACLFATQVTSFLLYVLSVSGRSS-IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY----NRLRPLS---Y 74 (207)
Q Consensus 3 ~~~ki~iiG~~~~GgKssli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~----~~~~~~~---~ 74 (207)
....|+++|.+++| ||||++++++.+. ...|.-|........+.+++ ...+.+||+||.... ..+...+ +
T Consensus 156 ~~adV~lvG~pnaG-KSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~~-~~~~~i~D~PGli~~a~~~~gLg~~flrhi 233 (329)
T TIGR02729 156 LLADVGLVGLPNAG-KSTLISAVSAAKPKIADYPFTTLVPNLGVVRVDD-GRSFVIADIPGLIEGASEGAGLGHRFLKHI 233 (329)
T ss_pred ccccEEEEcCCCCC-HHHHHHHHhcCCccccCCCCCccCCEEEEEEeCC-ceEEEEEeCCCcccCCcccccHHHHHHHHH
Confidence 35789999999999 9999999998753 22333332222222334433 356899999997432 2333344 4
Q ss_pred cCCcEEEEEEeCCCh---hhHHHHHHHHHHHHhhcC---CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHH
Q 028595 75 RGADVFVLAFSLVSR---ASYENVLKKWIPELQHYS---PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ 148 (207)
Q Consensus 75 ~~~d~~i~v~d~~~~---~s~~~~~~~~~~~i~~~~---~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 148 (207)
..++++++|+|+++. ++++.+ ..|.+++..+. .+.|+++|+||+|+.+... ..+..+.+++.
T Consensus 234 erad~ll~VvD~s~~~~~~~~e~l-~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~-----------~~~~~~~l~~~ 301 (329)
T TIGR02729 234 ERTRVLLHLIDISPLDGRDPIEDY-EIIRNELKKYSPELAEKPRIVVLNKIDLLDEEE-----------LAELLKELKKA 301 (329)
T ss_pred HhhCEEEEEEcCccccccCHHHHH-HHHHHHHHHhhhhhccCCEEEEEeCccCCChHH-----------HHHHHHHHHHH
Confidence 569999999999987 677777 67777776654 4789999999999965532 34456667777
Q ss_pred hCCcEEEEeccCCCCCHHHHHHHHHHHH
Q 028595 149 IGASYYIECSSKTQQNVKAVFDAAIKVV 176 (207)
Q Consensus 149 ~~~~~~~e~Sa~~~~~i~~~f~~i~~~~ 176 (207)
++. +++++||++++|++++++++.+.+
T Consensus 302 ~~~-~vi~iSAktg~GI~eL~~~I~~~l 328 (329)
T TIGR02729 302 LGK-PVFPISALTGEGLDELLYALAELL 328 (329)
T ss_pred cCC-cEEEEEccCCcCHHHHHHHHHHHh
Confidence 776 899999999999999999998754
No 148
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.88 E-value=1.1e-22 Score=151.22 Aligned_cols=146 Identities=11% Similarity=0.009 Sum_probs=102.8
Q ss_pred eeEEEEecccccceeeeeeeccC--CCCCccc------------cCceeeee-eeEEEECCeEEEEEEEeCCCCcccccc
Q 028595 5 AKLACLFATQVTSFLLYVLSVSG--RSSIWDY------------IPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRL 69 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~--~~~~~~~------------~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~ 69 (207)
.+|+++|..++| ||||+++|+. +.+...+ .++.+.++ .....+++..+.+.+|||||++++...
T Consensus 3 r~i~ivG~~~~G-KTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~ 81 (194)
T cd01891 3 RNIAIIAHVDHG-KTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGE 81 (194)
T ss_pred cEEEEEecCCCC-HHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcHHHHHH
Confidence 589999999999 9999999986 4444332 12233333 233445556688999999999999999
Q ss_pred ccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHh
Q 028595 70 RPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI 149 (207)
Q Consensus 70 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 149 (207)
+..+++++|++++|+|+++.. .... ..++..+.. .++|+++++||+|+.+.+.. ...+++.++...+
T Consensus 82 ~~~~~~~~d~~ilV~d~~~~~-~~~~-~~~~~~~~~--~~~p~iiv~NK~Dl~~~~~~---------~~~~~~~~~~~~~ 148 (194)
T cd01891 82 VERVLSMVDGVLLLVDASEGP-MPQT-RFVLKKALE--LGLKPIVVINKIDRPDARPE---------EVVDEVFDLFIEL 148 (194)
T ss_pred HHHHHHhcCEEEEEEECCCCc-cHHH-HHHHHHHHH--cCCCEEEEEECCCCCCCCHH---------HHHHHHHHHHHHh
Confidence 999999999999999998742 1222 233333332 37899999999999653321 1234555554332
Q ss_pred -------CCcEEEEeccCCCCCH
Q 028595 150 -------GASYYIECSSKTQQNV 165 (207)
Q Consensus 150 -------~~~~~~e~Sa~~~~~i 165 (207)
++ +++++||++|.|+
T Consensus 149 ~~~~~~~~~-~iv~~Sa~~g~~~ 170 (194)
T cd01891 149 GATEEQLDF-PVLYASAKNGWAS 170 (194)
T ss_pred CCccccCcc-CEEEeehhccccc
Confidence 45 8899999999766
No 149
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.88 E-value=8.2e-22 Score=139.48 Aligned_cols=152 Identities=34% Similarity=0.604 Sum_probs=118.1
Q ss_pred EEecccccceeeeeeeccCCCC-CccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEEEeCC
Q 028595 9 CLFATQVTSFLLYVLSVSGRSS-IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLV 87 (207)
Q Consensus 9 iiG~~~~GgKssli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~ 87 (207)
++|.+++| ||||++++.+... .....+|....+.......+....+.+||+||+..+...+..+++.+|++++|+|++
T Consensus 1 iiG~~~~G-KStl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 79 (157)
T cd00882 1 VVGDSGVG-KTSLLNRLLGGEFVPEEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVT 79 (157)
T ss_pred CCCcCCCc-HHHHHHHHHhCCcCCcccccchhheeeEEEEECCEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECc
Confidence 58999999 9999999998876 455666663334556666677899999999999988888888899999999999999
Q ss_pred ChhhHHHHHHHH--HHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHH-HHHHHHHhCCcEEEEeccCCCCC
Q 028595 88 SRASYENVLKKW--IPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQ-GEELRKQIGASYYIECSSKTQQN 164 (207)
Q Consensus 88 ~~~s~~~~~~~~--~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~~~~~~~e~Sa~~~~~ 164 (207)
++.+.... ..| .........+.|+++++||+|+...... .... ........+ .+++++|+.++.|
T Consensus 80 ~~~~~~~~-~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~----------~~~~~~~~~~~~~~-~~~~~~s~~~~~~ 147 (157)
T cd00882 80 DRESFENV-KEWLLLILINKEGENIPIILVGNKIDLPEERVV----------SEEELAEQLAKELG-VPYFETSAKTGEN 147 (157)
T ss_pred CHHHHHHH-HHHHHHHHHhhccCCCcEEEEEeccccccccch----------HHHHHHHHHHhhcC-CcEEEEecCCCCC
Confidence 99999988 555 2233333368999999999998765431 2221 333444444 4999999999999
Q ss_pred HHHHHHHHH
Q 028595 165 VKAVFDAAI 173 (207)
Q Consensus 165 i~~~f~~i~ 173 (207)
++++++++.
T Consensus 148 i~~~~~~l~ 156 (157)
T cd00882 148 VEELFEELA 156 (157)
T ss_pred hHHHHHHHh
Confidence 999999985
No 150
>PRK04213 GTP-binding protein; Provisional
Probab=99.88 E-value=1e-22 Score=152.22 Aligned_cols=154 Identities=16% Similarity=0.098 Sum_probs=104.5
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCC-----------Cccccccccc
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAG-----------QEDYNRLRPL 72 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G-----------~~~~~~~~~~ 72 (207)
..+|+++|.+++| ||||+|+|.+..+...+.|+.+.. ...+..+ .+.+||||| ++.++..+..
T Consensus 9 ~~~i~i~G~~~~G-KSsLin~l~~~~~~~~~~~~~t~~-~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 82 (201)
T PRK04213 9 KPEIVFVGRSNVG-KSTLVRELTGKKVRVGKRPGVTRK-PNHYDWG----DFILTDLPGFGFMSGVPKEVQEKIKDEIVR 82 (201)
T ss_pred CCEEEEECCCCCC-HHHHHHHHhCCCCccCCCCceeeC-ceEEeec----ceEEEeCCccccccccCHHHHHHHHHHHHH
Confidence 5699999999999 999999999887655455544221 2233222 588999999 4566666555
Q ss_pred eec----CCcEEEEEEeCCChhhHHH---------HHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCH
Q 028595 73 SYR----GADVFVLAFSLVSRASYEN---------VLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTT 139 (207)
Q Consensus 73 ~~~----~~d~~i~v~d~~~~~s~~~---------~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~ 139 (207)
++. .++++++|.|.++...... ....+...+.. .++|+++|+||+|+.+.. .
T Consensus 83 ~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~p~iiv~NK~Dl~~~~-------------~ 147 (201)
T PRK04213 83 YIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRE--LGIPPIVAVNKMDKIKNR-------------D 147 (201)
T ss_pred HHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHH--cCCCeEEEEECccccCcH-------------H
Confidence 654 3578888888765322210 00122233332 379999999999985432 2
Q ss_pred HHHHHHHHHhCCc--------EEEEeccCCCCCHHHHHHHHHHHHhCC
Q 028595 140 AQGEELRKQIGAS--------YYIECSSKTQQNVKAVFDAAIKVVIKP 179 (207)
Q Consensus 140 ~~~~~~~~~~~~~--------~~~e~Sa~~~~~i~~~f~~i~~~~~~~ 179 (207)
+.+.++++.++.. +++++||++| |++++|++|.+.+...
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~~ 194 (201)
T PRK04213 148 EVLDEIAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHEA 194 (201)
T ss_pred HHHHHHHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcCc
Confidence 3456666666641 4799999999 9999999999886543
No 151
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.88 E-value=1.6e-22 Score=138.75 Aligned_cols=114 Identities=24% Similarity=0.370 Sum_probs=88.8
Q ss_pred eEEEEecccccceeeeeeeccCCCCC--ccccCceeeeee-eEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEE
Q 028595 6 KLACLFATQVTSFLLYVLSVSGRSSI--WDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 82 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~~~~~--~~~~~t~~~~~~-~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~ 82 (207)
||+++|..++| ||||+++|++..+. ..+.++.+.++. ....+......+.+||++|++.+...+..++.++|++++
T Consensus 1 kI~V~G~~g~G-KTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~il 79 (119)
T PF08477_consen 1 KIVVLGDSGVG-KTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQEEFYSQHQFFLKKADAVIL 79 (119)
T ss_dssp EEEEECSTTSS-HHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEE
T ss_pred CEEEECcCCCC-HHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccceecccccchhhcCcEEEE
Confidence 79999999999 99999999988865 222333333342 355667777779999999999988888888999999999
Q ss_pred EEeCCChhhHHHHH--HHHHHHHhhcCCCCcEEEEeeCCC
Q 028595 83 AFSLVSRASYENVL--KKWIPELQHYSPGVPVVLVGTKLD 120 (207)
Q Consensus 83 v~d~~~~~s~~~~~--~~~~~~i~~~~~~~piivv~nK~D 120 (207)
|||+++++|++.+. ..|+..+....+++|+++||||.|
T Consensus 80 v~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 80 VYDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp EEECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred EEcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 99999999999972 235666666667899999999998
No 152
>PRK15494 era GTPase Era; Provisional
Probab=99.87 E-value=7.1e-22 Score=158.22 Aligned_cols=156 Identities=12% Similarity=0.165 Sum_probs=109.0
Q ss_pred eeEEEEecccccceeeeeeeccCCCCCc--cccCceeeeeeeEEEECCeEEEEEEEeCCCCcc-cccccc-------cee
Q 028595 5 AKLACLFATQVTSFLLYVLSVSGRSSIW--DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED-YNRLRP-------LSY 74 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~-~~~~~~-------~~~ 74 (207)
.+|+++|.++|| ||||+|+|++.++.. ....|........+..++ .++.+|||||... +..+.. .++
T Consensus 53 ~kV~ivG~~nvG-KSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~~--~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l 129 (339)
T PRK15494 53 VSVCIIGRPNSG-KSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLKD--TQVILYDTPGIFEPKGSLEKAMVRCAWSSL 129 (339)
T ss_pred eEEEEEcCCCCC-HHHHHHHHhCCceeeccCCCCCccCcEEEEEEeCC--eEEEEEECCCcCCCcccHHHHHHHHHHHHh
Confidence 489999999999 999999999887642 111222222233455555 4679999999843 332221 246
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhC-CcE
Q 028595 75 RGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG-ASY 153 (207)
Q Consensus 75 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~ 153 (207)
.++|++++|+|.++ ++......|+..+... +.|.++|+||+|+.+. ...++.+++...+ ...
T Consensus 130 ~~aDvil~VvD~~~--s~~~~~~~il~~l~~~--~~p~IlViNKiDl~~~-------------~~~~~~~~l~~~~~~~~ 192 (339)
T PRK15494 130 HSADLVLLIIDSLK--SFDDITHNILDKLRSL--NIVPIFLLNKIDIESK-------------YLNDIKAFLTENHPDSL 192 (339)
T ss_pred hhCCEEEEEEECCC--CCCHHHHHHHHHHHhc--CCCEEEEEEhhcCccc-------------cHHHHHHHHHhcCCCcE
Confidence 78999999999765 4444434556665543 5677889999998532 2345556665544 247
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHhCCC
Q 028595 154 YIECSSKTQQNVKAVFDAAIKVVIKPP 180 (207)
Q Consensus 154 ~~e~Sa~~~~~i~~~f~~i~~~~~~~~ 180 (207)
++++||++|.|++++|+++...+.+.+
T Consensus 193 i~~iSAktg~gv~eL~~~L~~~l~~~~ 219 (339)
T PRK15494 193 LFPISALSGKNIDGLLEYITSKAKISP 219 (339)
T ss_pred EEEEeccCccCHHHHHHHHHHhCCCCC
Confidence 999999999999999999999887653
No 153
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.87 E-value=6.2e-22 Score=165.28 Aligned_cols=175 Identities=20% Similarity=0.226 Sum_probs=117.7
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCC-ccccCcee-eeeeeEEEECCeEEEEEEEeCCCCcc--------ccccccce
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSI-WDYIPTVF-DNFSANVVAEGTTVNLGLWDTAGQED--------YNRLRPLS 73 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~-~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~--------~~~~~~~~ 73 (207)
+.+|+++|.++|| ||||+|+|+++... ....|.++ +.....+..++. .+.+|||||.+. +...+..+
T Consensus 38 ~~~V~IvG~~nvG-KSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~ 114 (472)
T PRK03003 38 LPVVAVVGRPNVG-KSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWNGR--RFTVVDTGGWEPDAKGLQASVAEQAEVA 114 (472)
T ss_pred CCEEEEEcCCCCC-HHHHHHHHhCcCcccccCCCCCCEeeEEEEEEECCc--EEEEEeCCCcCCcchhHHHHHHHHHHHH
Confidence 4689999999999 99999999987642 22233322 222334555554 578999999763 22334567
Q ss_pred ecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcE
Q 028595 74 YRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASY 153 (207)
Q Consensus 74 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 153 (207)
++.+|++|+|+|+++..+... ..+...+.. .+.|+++|+||+|+.... .+..+.+ .++...
T Consensus 115 ~~~aD~il~VvD~~~~~s~~~--~~i~~~l~~--~~~piilV~NK~Dl~~~~-------------~~~~~~~--~~g~~~ 175 (472)
T PRK03003 115 MRTADAVLFVVDATVGATATD--EAVARVLRR--SGKPVILAANKVDDERGE-------------ADAAALW--SLGLGE 175 (472)
T ss_pred HHhCCEEEEEEECCCCCCHHH--HHHHHHHHH--cCCCEEEEEECccCCccc-------------hhhHHHH--hcCCCC
Confidence 889999999999999866654 345555554 479999999999985422 1122223 234434
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHhCCCcchhhhcccCCCeEEeeecCCccc
Q 028595 154 YIECSSKTQQNVKAVFDAAIKVVIKPPQKQKEKKKKQRGCLLNVFCGRNLV 204 (207)
Q Consensus 154 ~~e~Sa~~~~~i~~~f~~i~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~ 204 (207)
.+++||++|.|++++|+++++.+.+....... ...-......|++.+
T Consensus 176 ~~~iSA~~g~gi~eL~~~i~~~l~~~~~~~~~----~~~~~kI~iiG~~nv 222 (472)
T PRK03003 176 PHPVSALHGRGVGDLLDAVLAALPEVPRVGSA----SGGPRRVALVGKPNV 222 (472)
T ss_pred eEEEEcCCCCCcHHHHHHHHhhcccccccccc----cccceEEEEECCCCC
Confidence 57999999999999999999988653221110 112234456787765
No 154
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.87 E-value=8.2e-22 Score=167.65 Aligned_cols=160 Identities=17% Similarity=0.151 Sum_probs=120.2
Q ss_pred ceeEEEEecccccceeeeeeeccCCC-------CCccccCc------eeeeee-eEEEE-----CCeEEEEEEEeCCCCc
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRS-------SIWDYIPT------VFDNFS-ANVVA-----EGTTVNLGLWDTAGQE 64 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~-------~~~~~~~t------~~~~~~-~~~~~-----~~~~~~l~i~D~~G~~ 64 (207)
..+++++|..++| ||||+++|+... +...+..+ .|.++. ..+.+ ++..+.+++|||||++
T Consensus 3 iRNi~IIGh~d~G-KTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~ 81 (595)
T TIGR01393 3 IRNFSIIAHIDHG-KSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHV 81 (595)
T ss_pred eeEEEEECCCCCC-HHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcH
Confidence 4689999999999 999999998642 22223222 133332 22222 5677999999999999
Q ss_pred cccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHH
Q 028595 65 DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEE 144 (207)
Q Consensus 65 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~ 144 (207)
+|...+..+++.+|++|+|+|+++..+.+.. ..|...+. .++|+++|+||+|+.... ..+..++
T Consensus 82 dF~~~v~~~l~~aD~aILVvDat~g~~~qt~-~~~~~~~~---~~ipiIiViNKiDl~~~~------------~~~~~~e 145 (595)
T TIGR01393 82 DFSYEVSRSLAACEGALLLVDAAQGIEAQTL-ANVYLALE---NDLEIIPVINKIDLPSAD------------PERVKKE 145 (595)
T ss_pred HHHHHHHHHHHhCCEEEEEecCCCCCCHhHH-HHHHHHHH---cCCCEEEEEECcCCCccC------------HHHHHHH
Confidence 9999999999999999999999997777766 45544443 378999999999986432 2233455
Q ss_pred HHHHhCCc--EEEEeccCCCCCHHHHHHHHHHHHhCCC
Q 028595 145 LRKQIGAS--YYIECSSKTQQNVKAVFDAAIKVVIKPP 180 (207)
Q Consensus 145 ~~~~~~~~--~~~e~Sa~~~~~i~~~f~~i~~~~~~~~ 180 (207)
+.+.++.. .++++||++|.|++++|+++++.+..+.
T Consensus 146 l~~~lg~~~~~vi~vSAktG~GI~~Lle~I~~~lp~p~ 183 (595)
T TIGR01393 146 IEEVIGLDASEAILASAKTGIGIEEILEAIVKRVPPPK 183 (595)
T ss_pred HHHHhCCCcceEEEeeccCCCCHHHHHHHHHHhCCCCC
Confidence 66666652 4899999999999999999999887654
No 155
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.87 E-value=7.5e-22 Score=164.78 Aligned_cols=159 Identities=19% Similarity=0.166 Sum_probs=112.0
Q ss_pred ceeEEEEecccccceeeeeeeccCCCC--CccccCceeeeeeeEEEECCeEEEEEEEeCCCCcc----------ccccc-
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSS--IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED----------YNRLR- 70 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~----------~~~~~- 70 (207)
..||+++|.+++| ||||+|+|++... ...+..|..+.....+..++.. +.+|||||..+ +..+.
T Consensus 211 ~~kI~iiG~~nvG-KSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~~~~--~~l~DTaG~~~~~~~~~~~e~~~~~~~ 287 (472)
T PRK03003 211 PRRVALVGKPNVG-KSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELGGKT--WRFVDTAGLRRRVKQASGHEYYASLRT 287 (472)
T ss_pred ceEEEEECCCCCC-HHHHHHHHhCCCcccccCCCCccCCcceEEEEECCEE--EEEEECCCccccccccchHHHHHHHHH
Confidence 4799999999999 9999999998864 2333344334445566677755 46999999532 22221
Q ss_pred cceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhC
Q 028595 71 PLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG 150 (207)
Q Consensus 71 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 150 (207)
..+++++|++++|+|+++..+++++ .++..+.. .+.|+++|+||+|+.+.... .....+.........
T Consensus 288 ~~~i~~ad~vilV~Da~~~~s~~~~--~~~~~~~~--~~~piIiV~NK~Dl~~~~~~--------~~~~~~i~~~l~~~~ 355 (472)
T PRK03003 288 HAAIEAAEVAVVLIDASEPISEQDQ--RVLSMVIE--AGRALVLAFNKWDLVDEDRR--------YYLEREIDRELAQVP 355 (472)
T ss_pred HHHHhcCCEEEEEEeCCCCCCHHHH--HHHHHHHH--cCCCEEEEEECcccCChhHH--------HHHHHHHHHhcccCC
Confidence 2356899999999999999888886 45555543 47999999999999653210 001122222222233
Q ss_pred CcEEEEeccCCCCCHHHHHHHHHHHHh
Q 028595 151 ASYYIECSSKTQQNVKAVFDAAIKVVI 177 (207)
Q Consensus 151 ~~~~~e~Sa~~~~~i~~~f~~i~~~~~ 177 (207)
..+++++||++|.|++++|+.+.+.+.
T Consensus 356 ~~~~~~~SAk~g~gv~~lf~~i~~~~~ 382 (472)
T PRK03003 356 WAPRVNISAKTGRAVDKLVPALETALE 382 (472)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 348999999999999999999998775
No 156
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.87 E-value=1.2e-21 Score=140.42 Aligned_cols=146 Identities=19% Similarity=0.159 Sum_probs=104.6
Q ss_pred EEEecccccceeeeeeeccCCC--CCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccc--------cccceecCC
Q 028595 8 ACLFATQVTSFLLYVLSVSGRS--SIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNR--------LRPLSYRGA 77 (207)
Q Consensus 8 ~iiG~~~~GgKssli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~--------~~~~~~~~~ 77 (207)
+++|.+++| ||||++++++.+ +...+.++..+........++ ..+.+|||||...+.. .+..++.++
T Consensus 1 ~l~G~~~~G-Kssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~ 77 (157)
T cd01894 1 AIVGRPNVG-KSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGG--REFILIDTGGIEPDDEGISKEIREQAELAIEEA 77 (157)
T ss_pred CccCCCCCC-HHHHHHHHhCCcEEeecCCCCceeCceeEEEEECC--eEEEEEECCCCCCchhHHHHHHHHHHHHHHHhC
Confidence 579999999 999999999875 233444444333344444454 6789999999887544 234567889
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEe
Q 028595 78 DVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIEC 157 (207)
Q Consensus 78 d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~ 157 (207)
|++++|+|..+..+.... .+...+... +.|+++|+||+|+.+... . ......++..+++++
T Consensus 78 d~ii~v~d~~~~~~~~~~--~~~~~~~~~--~~piiiv~nK~D~~~~~~-----------~----~~~~~~~~~~~~~~~ 138 (157)
T cd01894 78 DVILFVVDGREGLTPADE--EIAKYLRKS--KKPVILVVNKVDNIKEED-----------E----AAEFYSLGFGEPIPI 138 (157)
T ss_pred CEEEEEEeccccCCccHH--HHHHHHHhc--CCCEEEEEECcccCChHH-----------H----HHHHHhcCCCCeEEE
Confidence 999999999876555443 333444332 699999999999965432 1 222334565578999
Q ss_pred ccCCCCCHHHHHHHHHHH
Q 028595 158 SSKTQQNVKAVFDAAIKV 175 (207)
Q Consensus 158 Sa~~~~~i~~~f~~i~~~ 175 (207)
|++++.|++++|+++++.
T Consensus 139 Sa~~~~gv~~l~~~l~~~ 156 (157)
T cd01894 139 SAEHGRGIGDLLDAILEL 156 (157)
T ss_pred ecccCCCHHHHHHHHHhh
Confidence 999999999999999875
No 157
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.86 E-value=1.8e-21 Score=160.34 Aligned_cols=150 Identities=19% Similarity=0.159 Sum_probs=114.0
Q ss_pred ceeEEEEecccccceeeeeeeccCCC--CCccccCceeeeeeeEEEECCeEEEEEEEeCCCCcccccc--------ccce
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRS--SIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRL--------RPLS 73 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~--------~~~~ 73 (207)
..||+++|.+++| ||||+|+|++.. +...+..|..+.+...+.++| +.+.+|||||....... ...+
T Consensus 203 g~kVvIvG~~nvG-KSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~g--~~v~l~DTaG~~~~~~~ie~~gi~~~~~~ 279 (442)
T TIGR00450 203 GFKLAIVGSPNVG-KSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELNG--ILIKLLDTAGIREHADFVERLGIEKSFKA 279 (442)
T ss_pred CCEEEEECCCCCc-HHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEECC--EEEEEeeCCCcccchhHHHHHHHHHHHHH
Confidence 4799999999999 999999999875 344555555455566777777 45689999998655432 2357
Q ss_pred ecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcE
Q 028595 74 YRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASY 153 (207)
Q Consensus 74 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 153 (207)
++++|++++|+|++++.+++.. |+..+.. .+.|+++|+||+|+.+. +...+++.++. +
T Consensus 280 ~~~aD~il~V~D~s~~~s~~~~---~l~~~~~--~~~piIlV~NK~Dl~~~----------------~~~~~~~~~~~-~ 337 (442)
T TIGR00450 280 IKQADLVIYVLDASQPLTKDDF---LIIDLNK--SKKPFILVLNKIDLKIN----------------SLEFFVSSKVL-N 337 (442)
T ss_pred HhhCCEEEEEEECCCCCChhHH---HHHHHhh--CCCCEEEEEECccCCCc----------------chhhhhhhcCC-c
Confidence 8899999999999998887653 5555433 37899999999998532 12345566676 7
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHhCC
Q 028595 154 YIECSSKTQQNVKAVFDAAIKVVIKP 179 (207)
Q Consensus 154 ~~e~Sa~~~~~i~~~f~~i~~~~~~~ 179 (207)
++++||++ .||+++|+.+.+.+...
T Consensus 338 ~~~vSak~-~gI~~~~~~L~~~i~~~ 362 (442)
T TIGR00450 338 SSNLSAKQ-LKIKALVDLLTQKINAF 362 (442)
T ss_pred eEEEEEec-CCHHHHHHHHHHHHHHH
Confidence 89999998 69999999999887643
No 158
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.86 E-value=8.7e-22 Score=141.75 Aligned_cols=143 Identities=15% Similarity=0.091 Sum_probs=102.1
Q ss_pred eeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccc----cceecCCcEE
Q 028595 5 AKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLR----PLSYRGADVF 80 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~----~~~~~~~d~~ 80 (207)
.+|+++|.+++| ||||+|++.+.. . ...+|.+..+ ++. .+|||||+......+ ...+.++|++
T Consensus 2 ~~i~~iG~~~~G-Kstl~~~l~~~~-~-~~~~~~~v~~------~~~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~i 68 (158)
T PRK15467 2 KRIAFVGAVGAG-KTTLFNALQGNY-T-LARKTQAVEF------NDK----GDIDTPGEYFSHPRWYHALITTLQDVDML 68 (158)
T ss_pred cEEEEECCCCCC-HHHHHHHHcCCC-c-cCccceEEEE------CCC----CcccCCccccCCHHHHHHHHHHHhcCCEE
Confidence 389999999999 999999987653 1 1123333222 221 269999973222111 1236789999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCC-cEEEEecc
Q 028595 81 VLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA-SYYIECSS 159 (207)
Q Consensus 81 i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~e~Sa 159 (207)
++|+|+++.+++.. .|+..+ ..+.|+++++||+|+.+. ..+.+.++++.++. .|++++||
T Consensus 69 l~v~d~~~~~s~~~---~~~~~~---~~~~~ii~v~nK~Dl~~~-------------~~~~~~~~~~~~~~~~p~~~~Sa 129 (158)
T PRK15467 69 IYVHGANDPESRLP---AGLLDI---GVSKRQIAVISKTDMPDA-------------DVAATRKLLLETGFEEPIFELNS 129 (158)
T ss_pred EEEEeCCCcccccC---HHHHhc---cCCCCeEEEEEccccCcc-------------cHHHHHHHHHHcCCCCCEEEEEC
Confidence 99999999877633 333333 236799999999998542 44567788888875 38999999
Q ss_pred CCCCCHHHHHHHHHHHHhCC
Q 028595 160 KTQQNVKAVFDAAIKVVIKP 179 (207)
Q Consensus 160 ~~~~~i~~~f~~i~~~~~~~ 179 (207)
++|+|++++|+.+.+.+.+.
T Consensus 130 ~~g~gi~~l~~~l~~~~~~~ 149 (158)
T PRK15467 130 HDPQSVQQLVDYLASLTKQE 149 (158)
T ss_pred CCccCHHHHHHHHHHhchhh
Confidence 99999999999998777543
No 159
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.86 E-value=2.4e-21 Score=155.47 Aligned_cols=151 Identities=18% Similarity=0.164 Sum_probs=107.3
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCCc-cccCceeeeeeeEEEECCeEEEEEEEeCCCCcc---------ccccccce
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSIW-DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED---------YNRLRPLS 73 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~---------~~~~~~~~ 73 (207)
..+|+++|.+|+| ||||+|+|++..... .+..|..+.....+.+++ ...+.+|||+|..+ +.+.. ..
T Consensus 189 ~~~ValvG~~NvG-KSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~-~~~i~l~DT~G~~~~l~~~lie~f~~tl-e~ 265 (351)
T TIGR03156 189 VPTVALVGYTNAG-KSTLFNALTGADVYAADQLFATLDPTTRRLDLPD-GGEVLLTDTVGFIRDLPHELVAAFRATL-EE 265 (351)
T ss_pred CcEEEEECCCCCC-HHHHHHHHhCCceeeccCCccccCCEEEEEEeCC-CceEEEEecCcccccCCHHHHHHHHHHH-HH
Confidence 4789999999999 999999999886432 222233333445566643 24788999999722 22221 24
Q ss_pred ecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCc
Q 028595 74 YRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGAS 152 (207)
Q Consensus 74 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 152 (207)
+.++|++++|+|++++.+.+.. ..|...+.... .+.|+++|+||+|+.+... ...+.. +..
T Consensus 266 ~~~ADlil~VvD~s~~~~~~~~-~~~~~~L~~l~~~~~piIlV~NK~Dl~~~~~---------------v~~~~~--~~~ 327 (351)
T TIGR03156 266 VREADLLLHVVDASDPDREEQI-EAVEKVLEELGAEDIPQLLVYNKIDLLDEPR---------------IERLEE--GYP 327 (351)
T ss_pred HHhCCEEEEEEECCCCchHHHH-HHHHHHHHHhccCCCCEEEEEEeecCCChHh---------------HHHHHh--CCC
Confidence 7789999999999999888776 56666665543 4789999999999864321 111111 223
Q ss_pred EEEEeccCCCCCHHHHHHHHHHH
Q 028595 153 YYIECSSKTQQNVKAVFDAAIKV 175 (207)
Q Consensus 153 ~~~e~Sa~~~~~i~~~f~~i~~~ 175 (207)
+++++||++|.|++++++.+.+.
T Consensus 328 ~~i~iSAktg~GI~eL~~~I~~~ 350 (351)
T TIGR03156 328 EAVFVSAKTGEGLDLLLEAIAER 350 (351)
T ss_pred CEEEEEccCCCCHHHHHHHHHhh
Confidence 68999999999999999998764
No 160
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.85 E-value=2.2e-21 Score=141.66 Aligned_cols=153 Identities=18% Similarity=0.187 Sum_probs=104.2
Q ss_pred EEecccccceeeeeeeccCCCC-CccccCceeeeeeeEEEECCeEEEEEEEeCCCCcc----ccccc---cceecCCcEE
Q 028595 9 CLFATQVTSFLLYVLSVSGRSS-IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED----YNRLR---PLSYRGADVF 80 (207)
Q Consensus 9 iiG~~~~GgKssli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~----~~~~~---~~~~~~~d~~ 80 (207)
++|.+++| ||||+|++.+... ...+..+........+..++ ...+.+|||||... .+.+. ..+++++|++
T Consensus 1 iiG~~~~G-KStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~i 78 (176)
T cd01881 1 LVGLPNVG-KSTLLNALTNAKPKVANYPFTTLEPNLGVVEVPD-GARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAI 78 (176)
T ss_pred CCCCCCCc-HHHHHHHHhcCCccccCCCceeecCcceEEEcCC-CCeEEEEeccccchhhhcCCCccHHHHHHHhccCEE
Confidence 58999999 9999999998864 22333332222222344441 35679999999642 22232 2346789999
Q ss_pred EEEEeCCCh------hhHHHHHHHHHHHHhhcC--------CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHH
Q 028595 81 VLAFSLVSR------ASYENVLKKWIPELQHYS--------PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELR 146 (207)
Q Consensus 81 i~v~d~~~~------~s~~~~~~~~~~~i~~~~--------~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~ 146 (207)
++|+|+++. .++.+. ..|...+.... .+.|+++|+||+|+...... .........
T Consensus 79 i~v~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~----------~~~~~~~~~ 147 (176)
T cd01881 79 LHVVDASEDDDIGGVDPLEDY-EILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEEL----------EEELVRELA 147 (176)
T ss_pred EEEEeccCCccccccCHHHHH-HHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHH----------HHHHHHHHh
Confidence 999999998 467766 56666665432 37999999999999755431 222223333
Q ss_pred HHhCCcEEEEeccCCCCCHHHHHHHHHHH
Q 028595 147 KQIGASYYIECSSKTQQNVKAVFDAAIKV 175 (207)
Q Consensus 147 ~~~~~~~~~e~Sa~~~~~i~~~f~~i~~~ 175 (207)
...+. +++++||+++.|++++++++.+.
T Consensus 148 ~~~~~-~~~~~Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 148 LEEGA-EVVPISAKTEEGLDELIRAIYEL 175 (176)
T ss_pred cCCCC-CEEEEehhhhcCHHHHHHHHHhh
Confidence 33444 79999999999999999998764
No 161
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.85 E-value=1.3e-21 Score=138.73 Aligned_cols=147 Identities=18% Similarity=0.190 Sum_probs=103.6
Q ss_pred eeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCcccc------cccccee--c
Q 028595 5 AKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYN------RLRPLSY--R 75 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~------~~~~~~~--~ 75 (207)
++|+++|.+|+| ||||+|+|++.+......|..+.+. ...+..++ ..+.++|+||-.... .....++ .
T Consensus 1 i~ialvG~PNvG-KStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~~--~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~ 77 (156)
T PF02421_consen 1 IRIALVGNPNVG-KSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLGD--QQVELVDLPGIYSLSSKSEEERVARDYLLSE 77 (156)
T ss_dssp -EEEEEESTTSS-HHHHHHHHHTTSEEEEESTTSSSEEEEEEEEETT--EEEEEEE----SSSSSSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCC-HHHHHHHHHCCCceecCCCCCCeeeeeEEEEecC--ceEEEEECCCcccCCCCCcHHHHHHHHHhhc
Confidence 489999999999 9999999999985433334433333 44666666 567899999943322 2233444 5
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEE
Q 028595 76 GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYI 155 (207)
Q Consensus 76 ~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 155 (207)
..|+++.|.|.++.+.-.++ ..++.+. ++|+++++||+|..+... ...+...+++.+|+ |.+
T Consensus 78 ~~D~ii~VvDa~~l~r~l~l----~~ql~e~--g~P~vvvlN~~D~a~~~g-----------~~id~~~Ls~~Lg~-pvi 139 (156)
T PF02421_consen 78 KPDLIIVVVDATNLERNLYL----TLQLLEL--GIPVVVVLNKMDEAERKG-----------IEIDAEKLSERLGV-PVI 139 (156)
T ss_dssp SSSEEEEEEEGGGHHHHHHH----HHHHHHT--TSSEEEEEETHHHHHHTT-----------EEE-HHHHHHHHTS--EE
T ss_pred CCCEEEEECCCCCHHHHHHH----HHHHHHc--CCCEEEEEeCHHHHHHcC-----------CEECHHHHHHHhCC-CEE
Confidence 79999999999987655444 2233332 899999999999876654 22357888888998 999
Q ss_pred EeccCCCCCHHHHHHHH
Q 028595 156 ECSSKTQQNVKAVFDAA 172 (207)
Q Consensus 156 e~Sa~~~~~i~~~f~~i 172 (207)
.+||.+++|++++++.|
T Consensus 140 ~~sa~~~~g~~~L~~~I 156 (156)
T PF02421_consen 140 PVSARTGEGIDELKDAI 156 (156)
T ss_dssp EEBTTTTBTHHHHHHHH
T ss_pred EEEeCCCcCHHHHHhhC
Confidence 99999999999999875
No 162
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.85 E-value=4.2e-21 Score=158.96 Aligned_cols=147 Identities=20% Similarity=0.185 Sum_probs=111.0
Q ss_pred ceeEEEEecccccceeeeeeeccCCCC--CccccCceeeeeeeEEEECCeEEEEEEEeCCCCcccccc--------ccce
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSS--IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRL--------RPLS 73 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~--------~~~~ 73 (207)
.++|+++|.+++| ||||+|+|++... ...+..|..+.....+.+++ ..+.+|||||.+.+... ...+
T Consensus 215 ~~kV~ivG~~nvG-KSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~i~l~DT~G~~~~~~~ie~~gi~~~~~~ 291 (449)
T PRK05291 215 GLKVVIAGRPNVG-KSSLLNALLGEERAIVTDIAGTTRDVIEEHINLDG--IPLRLIDTAGIRETDDEVEKIGIERSREA 291 (449)
T ss_pred CCEEEEECCCCCC-HHHHHHHHhCCCCcccCCCCCcccccEEEEEEECC--eEEEEEeCCCCCCCccHHHHHHHHHHHHH
Confidence 3689999999999 9999999998764 33444444444455667776 45789999998765432 2346
Q ss_pred ecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcE
Q 028595 74 YRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASY 153 (207)
Q Consensus 74 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 153 (207)
+.++|++++|+|++++.+++.. ..|.. ..+.|+++|+||+|+.+.... . ...+. +
T Consensus 292 ~~~aD~il~VvD~s~~~s~~~~-~~l~~-----~~~~piiiV~NK~DL~~~~~~----------~--------~~~~~-~ 346 (449)
T PRK05291 292 IEEADLVLLVLDASEPLTEEDD-EILEE-----LKDKPVIVVLNKADLTGEIDL----------E--------EENGK-P 346 (449)
T ss_pred HHhCCEEEEEecCCCCCChhHH-HHHHh-----cCCCCcEEEEEhhhccccchh----------h--------hccCC-c
Confidence 7889999999999998887765 44433 347899999999999654321 1 22333 7
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHhC
Q 028595 154 YIECSSKTQQNVKAVFDAAIKVVIK 178 (207)
Q Consensus 154 ~~e~Sa~~~~~i~~~f~~i~~~~~~ 178 (207)
++++||++|.|++++++++.+.+..
T Consensus 347 ~i~iSAktg~GI~~L~~~L~~~l~~ 371 (449)
T PRK05291 347 VIRISAKTGEGIDELREAIKELAFG 371 (449)
T ss_pred eEEEEeeCCCCHHHHHHHHHHHHhh
Confidence 8999999999999999999988753
No 163
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.85 E-value=1.6e-20 Score=155.58 Aligned_cols=156 Identities=23% Similarity=0.228 Sum_probs=111.7
Q ss_pred ceeEEEEecccccceeeeeeeccCCCC--CccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccc-----------
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSS--IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLR----------- 70 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~----------- 70 (207)
..+|+++|.+++| ||||+|+|++... ...+..|..+.....+..++. .+.+|||||..+.....
T Consensus 172 ~~~v~ivG~~~~G-KSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~liDT~G~~~~~~~~~~~e~~~~~~~ 248 (429)
T TIGR03594 172 PIKIAIIGRPNVG-KSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGK--KYLLIDTAGIRRKGKVTEGVEKYSVLRT 248 (429)
T ss_pred ceEEEEECCCCCC-HHHHHHHHHCCCeeecCCCCCceECcEeEEEEECCc--EEEEEECCCccccccchhhHHHHHHHHH
Confidence 4689999999999 9999999998763 334444544444455555664 67899999976654332
Q ss_pred cceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHH-HHHHH-
Q 028595 71 PLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGE-ELRKQ- 148 (207)
Q Consensus 71 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~-~~~~~- 148 (207)
..+++.+|++++|+|+++..+.++. .++..+.. .+.|+++|+||+|+.+... ..++.. .+.+.
T Consensus 249 ~~~~~~ad~~ilV~D~~~~~~~~~~--~~~~~~~~--~~~~iiiv~NK~Dl~~~~~-----------~~~~~~~~~~~~~ 313 (429)
T TIGR03594 249 LKAIERADVVLLVLDATEGITEQDL--RIAGLILE--AGKALVIVVNKWDLVKDEK-----------TREEFKKELRRKL 313 (429)
T ss_pred HHHHHhCCEEEEEEECCCCccHHHH--HHHHHHHH--cCCcEEEEEECcccCCCHH-----------HHHHHHHHHHHhc
Confidence 2357889999999999998887775 44444443 3799999999999973221 122222 22222
Q ss_pred --hCCcEEEEeccCCCCCHHHHHHHHHHHHh
Q 028595 149 --IGASYYIECSSKTQQNVKAVFDAAIKVVI 177 (207)
Q Consensus 149 --~~~~~~~e~Sa~~~~~i~~~f~~i~~~~~ 177 (207)
.+..+++++||++|.|++++|+++.+.+.
T Consensus 314 ~~~~~~~vi~~SA~~g~~v~~l~~~i~~~~~ 344 (429)
T TIGR03594 314 PFLDFAPIVFISALTGQGVDKLLDAIDEVYE 344 (429)
T ss_pred ccCCCCceEEEeCCCCCCHHHHHHHHHHHHH
Confidence 23458999999999999999999988765
No 164
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.85 E-value=1.3e-20 Score=156.39 Aligned_cols=150 Identities=19% Similarity=0.178 Sum_probs=107.0
Q ss_pred eeEEEEecccccceeeeeeeccCCCC--CccccCceeeeeeeEEEECCeEEEEEEEeCCCCcc--------cccccccee
Q 028595 5 AKLACLFATQVTSFLLYVLSVSGRSS--IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED--------YNRLRPLSY 74 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~--------~~~~~~~~~ 74 (207)
.+|+++|.++|| ||||+|+|.+.+. ...+..+..+.....+..++ ..+.+|||||++. .......++
T Consensus 2 ~~I~ivG~~~vG-KStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~~ 78 (435)
T PRK00093 2 PVVAIVGRPNVG-KSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLG--REFILIDTGGIEPDDDGFEKQIREQAELAI 78 (435)
T ss_pred CEEEEECCCCCC-HHHHHHHHhCCCceeeCCCCCCcccceEEEEEECC--cEEEEEECCCCCCcchhHHHHHHHHHHHHH
Confidence 589999999999 9999999998874 33333333344444566666 6789999999886 222345567
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEE
Q 028595 75 RGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYY 154 (207)
Q Consensus 75 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 154 (207)
..+|++++|+|.++..+..+. .+...+... +.|+++|+||+|+.+.. ....++ ..++...+
T Consensus 79 ~~ad~il~vvd~~~~~~~~~~--~~~~~l~~~--~~piilv~NK~D~~~~~--------------~~~~~~-~~lg~~~~ 139 (435)
T PRK00093 79 EEADVILFVVDGRAGLTPADE--EIAKILRKS--NKPVILVVNKVDGPDEE--------------ADAYEF-YSLGLGEP 139 (435)
T ss_pred HhCCEEEEEEECCCCCCHHHH--HHHHHHHHc--CCcEEEEEECccCccch--------------hhHHHH-HhcCCCCC
Confidence 899999999999886444332 223333332 79999999999964321 122222 34566458
Q ss_pred EEeccCCCCCHHHHHHHHHHHH
Q 028595 155 IECSSKTQQNVKAVFDAAIKVV 176 (207)
Q Consensus 155 ~e~Sa~~~~~i~~~f~~i~~~~ 176 (207)
+++||.+|.|++++|+.++...
T Consensus 140 ~~iSa~~g~gv~~l~~~I~~~~ 161 (435)
T PRK00093 140 YPISAEHGRGIGDLLDAILEEL 161 (435)
T ss_pred EEEEeeCCCCHHHHHHHHHhhC
Confidence 9999999999999999998844
No 165
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.85 E-value=2.1e-20 Score=152.58 Aligned_cols=159 Identities=20% Similarity=0.190 Sum_probs=114.3
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCC-ccccCceeeeeeeEEEECCeEEEEEEEeCCCCc----cccccccce---ec
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSI-WDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQE----DYNRLRPLS---YR 75 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~----~~~~~~~~~---~~ 75 (207)
..-|+++|.+++| ||||++++++.+.. ..|.-|+-......+.+++ ...+.+||+||.. ....+...| +.
T Consensus 158 ~adVglVG~pNaG-KSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~~-~~~~~laD~PGliega~~~~gLg~~fLrhie 235 (424)
T PRK12297 158 LADVGLVGFPNVG-KSTLLSVVSNAKPKIANYHFTTLVPNLGVVETDD-GRSFVMADIPGLIEGASEGVGLGHQFLRHIE 235 (424)
T ss_pred cCcEEEEcCCCCC-HHHHHHHHHcCCCccccCCcceeceEEEEEEEeC-CceEEEEECCCCcccccccchHHHHHHHHHh
Confidence 4579999999999 99999999987632 2333222221122233331 3568899999963 223344444 44
Q ss_pred CCcEEEEEEeCCCh---hhHHHHHHHHHHHHhhcC---CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHh
Q 028595 76 GADVFVLAFSLVSR---ASYENVLKKWIPELQHYS---PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI 149 (207)
Q Consensus 76 ~~d~~i~v~d~~~~---~s~~~~~~~~~~~i~~~~---~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 149 (207)
+++++++|+|+++. ++++.. ..|.+++..+. .+.|++||+||+|+.. ..+..+.+.+.+
T Consensus 236 r~~llI~VID~s~~~~~dp~e~~-~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~--------------~~e~l~~l~~~l 300 (424)
T PRK12297 236 RTRVIVHVIDMSGSEGRDPIEDY-EKINKELKLYNPRLLERPQIVVANKMDLPE--------------AEENLEEFKEKL 300 (424)
T ss_pred hCCEEEEEEeCCccccCChHHHH-HHHHHHHhhhchhccCCcEEEEEeCCCCcC--------------CHHHHHHHHHHh
Confidence 59999999999865 666766 67777777665 3789999999999832 234556677777
Q ss_pred CCcEEEEeccCCCCCHHHHHHHHHHHHhCCC
Q 028595 150 GASYYIECSSKTQQNVKAVFDAAIKVVIKPP 180 (207)
Q Consensus 150 ~~~~~~e~Sa~~~~~i~~~f~~i~~~~~~~~ 180 (207)
+. +++++||++++|++++++++.+.+...+
T Consensus 301 ~~-~i~~iSA~tgeGI~eL~~~L~~~l~~~~ 330 (424)
T PRK12297 301 GP-KVFPISALTGQGLDELLYAVAELLEETP 330 (424)
T ss_pred CC-cEEEEeCCCCCCHHHHHHHHHHHHHhCc
Confidence 75 8999999999999999999998886543
No 166
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.85 E-value=9.9e-21 Score=139.69 Aligned_cols=159 Identities=14% Similarity=0.066 Sum_probs=112.4
Q ss_pred eEEEEecccccceeeeeeeccCCCCCccccCcee--------------eeeee-EEEECCeEEEEEEEeCCCCccccccc
Q 028595 6 KLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVF--------------DNFSA-NVVAEGTTVNLGLWDTAGQEDYNRLR 70 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~--------------~~~~~-~~~~~~~~~~l~i~D~~G~~~~~~~~ 70 (207)
+|+++|..++| ||||+++|++......+.++.. ..... ....+.....+.+|||||+..+...+
T Consensus 1 ~v~v~G~~~~G-KStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~ 79 (189)
T cd00881 1 NVGIAGHVDHG-KTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHEDFSSEV 79 (189)
T ss_pred CEEEEeCCCCC-HHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcHHHHHHH
Confidence 48999999999 9999999998876544322221 11110 11112224678999999999888888
Q ss_pred cceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhC
Q 028595 71 PLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG 150 (207)
Q Consensus 71 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 150 (207)
..+++.+|++++|+|.++..+.... .++..+.. .+.|+++++||+|+...... ....+++++..+..+
T Consensus 80 ~~~~~~~d~~i~v~d~~~~~~~~~~--~~~~~~~~--~~~~i~iv~nK~D~~~~~~~--------~~~~~~~~~~~~~~~ 147 (189)
T cd00881 80 IRGLSVSDGAILVVDANEGVQPQTR--EHLRIARE--GGLPIIVAINKIDRVGEEDL--------EEVLREIKELLGLIG 147 (189)
T ss_pred HHHHHhcCEEEEEEECCCCCcHHHH--HHHHHHHH--CCCCeEEEEECCCCcchhcH--------HHHHHHHHHHHcccc
Confidence 8999999999999999987655443 34444443 48999999999999753221 002334444444422
Q ss_pred -------------CcEEEEeccCCCCCHHHHHHHHHHHHh
Q 028595 151 -------------ASYYIECSSKTQQNVKAVFDAAIKVVI 177 (207)
Q Consensus 151 -------------~~~~~e~Sa~~~~~i~~~f~~i~~~~~ 177 (207)
..+++++||++|.|++++|.++.+.+.
T Consensus 148 ~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l~ 187 (189)
T cd00881 148 FISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHLP 187 (189)
T ss_pred ccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhCC
Confidence 248999999999999999999998874
No 167
>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]
Probab=99.84 E-value=4.7e-23 Score=145.85 Aligned_cols=167 Identities=23% Similarity=0.326 Sum_probs=143.4
Q ss_pred ccceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECC-eEEEEEEEeCCCCccccccccceecCCcE
Q 028595 2 ELLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEG-TTVNLGLWDTAGQEDYNRLRPLSYRGADV 79 (207)
Q Consensus 2 ~~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~-~~~~l~i~D~~G~~~~~~~~~~~~~~~d~ 79 (207)
++++|+.++|.-++| ||+++.++.-..+...|..|+|..+ .+...-++ ..+.++|||+.||+++..+...|++.+.+
T Consensus 23 ~hL~k~lVig~~~vg-kts~i~ryv~~nfs~~yRAtIgvdfalkVl~wdd~t~vRlqLwdIagQerfg~mtrVyykea~~ 101 (229)
T KOG4423|consen 23 EHLFKVLVIGDLGVG-KTSSIKRYVHQNFSYHYRATIGVDFALKVLQWDDKTIVRLQLWDIAGQERFGNMTRVYYKEAHG 101 (229)
T ss_pred hhhhhhheeeecccc-chhHHHHHHHHHHHHHHHHHHhHHHHHHHhccChHHHHHHHHhcchhhhhhcceEEEEecCCcc
Confidence 467899999999999 9999999999999999999999888 34444444 45788999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhcC-----CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEE
Q 028595 80 FVLAFSLVSRASYENVLKKWIPELQHYS-----PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYY 154 (207)
Q Consensus 80 ~i~v~d~~~~~s~~~~~~~~~~~i~~~~-----~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 154 (207)
..+|||+++.-+|+.. ..|.+.+-... ..+|+++..||+|..+.-.. -...+..++++.+|...+
T Consensus 102 ~~iVfdvt~s~tfe~~-skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~---------~~~~~~d~f~kengf~gw 171 (229)
T KOG4423|consen 102 AFIVFDVTRSLTFEPV-SKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKN---------EATRQFDNFKKENGFEGW 171 (229)
T ss_pred eEEEEEccccccccHH-HHHHHhccCcccCCCCCcchheeccchhccChHhhh---------hhHHHHHHHHhccCccce
Confidence 9999999999999999 78988886544 25788999999998765321 134677888999999999
Q ss_pred EEeccCCCCCHHHHHHHHHHHHhCC
Q 028595 155 IECSSKTQQNVKAVFDAAIKVVIKP 179 (207)
Q Consensus 155 ~e~Sa~~~~~i~~~f~~i~~~~~~~ 179 (207)
+++|++.+.|++|+-..+++.+.-.
T Consensus 172 tets~Kenkni~Ea~r~lVe~~lvn 196 (229)
T KOG4423|consen 172 TETSAKENKNIPEAQRELVEKILVN 196 (229)
T ss_pred eeeccccccChhHHHHHHHHHHHhh
Confidence 9999999999999999999988744
No 168
>PRK00089 era GTPase Era; Reviewed
Probab=99.84 E-value=1.9e-20 Score=147.74 Aligned_cols=160 Identities=19% Similarity=0.174 Sum_probs=111.1
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCCccc--cCceeeeeeeEEEECCeEEEEEEEeCCCCccccc--------cccce
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDY--IPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNR--------LRPLS 73 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~--------~~~~~ 73 (207)
...|+++|.+++| ||||+|++++.++.... ..|...... .+... ...++.+|||||...... .....
T Consensus 5 ~g~V~iiG~pn~G-KSTLin~L~g~~~~~vs~~~~tt~~~i~-~i~~~-~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~ 81 (292)
T PRK00089 5 SGFVAIVGRPNVG-KSTLLNALVGQKISIVSPKPQTTRHRIR-GIVTE-DDAQIIFVDTPGIHKPKRALNRAMNKAAWSS 81 (292)
T ss_pred eEEEEEECCCCCC-HHHHHHHHhCCceeecCCCCCcccccEE-EEEEc-CCceEEEEECCCCCCchhHHHHHHHHHHHHH
Confidence 4579999999999 99999999988764322 222222111 12222 237889999999654321 22345
Q ss_pred ecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcE
Q 028595 74 YRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASY 153 (207)
Q Consensus 74 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 153 (207)
+.++|++++|+|+++..+... ..++..+.. .+.|+++|+||+|+...... .....+.+.+..+..+
T Consensus 82 ~~~~D~il~vvd~~~~~~~~~--~~i~~~l~~--~~~pvilVlNKiDl~~~~~~----------l~~~~~~l~~~~~~~~ 147 (292)
T PRK00089 82 LKDVDLVLFVVDADEKIGPGD--EFILEKLKK--VKTPVILVLNKIDLVKDKEE----------LLPLLEELSELMDFAE 147 (292)
T ss_pred HhcCCEEEEEEeCCCCCChhH--HHHHHHHhh--cCCCEEEEEECCcCCCCHHH----------HHHHHHHHHhhCCCCe
Confidence 678999999999998322221 234444442 36899999999999743321 4456667777667668
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHhCCC
Q 028595 154 YIECSSKTQQNVKAVFDAAIKVVIKPP 180 (207)
Q Consensus 154 ~~e~Sa~~~~~i~~~f~~i~~~~~~~~ 180 (207)
++++||+++.|++++++++.+.+...+
T Consensus 148 i~~iSA~~~~gv~~L~~~L~~~l~~~~ 174 (292)
T PRK00089 148 IVPISALKGDNVDELLDVIAKYLPEGP 174 (292)
T ss_pred EEEecCCCCCCHHHHHHHHHHhCCCCC
Confidence 999999999999999999999886543
No 169
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.84 E-value=1.2e-20 Score=140.07 Aligned_cols=162 Identities=12% Similarity=0.007 Sum_probs=102.8
Q ss_pred eeEEEEecccccceeeeeeeccCC----CCCccc-----cCceeeee-eeEEE----------ECCeEEEEEEEeCCCCc
Q 028595 5 AKLACLFATQVTSFLLYVLSVSGR----SSIWDY-----IPTVFDNF-SANVV----------AEGTTVNLGLWDTAGQE 64 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~~----~~~~~~-----~~t~~~~~-~~~~~----------~~~~~~~l~i~D~~G~~ 64 (207)
++|+++|..++| ||||+++|+.. .+...+ ..|....+ ...+. .++..+.+.+|||||+.
T Consensus 1 ~~i~i~G~~~~G-KstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~ 79 (192)
T cd01889 1 VNVGVLGHVDSG-KTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHA 79 (192)
T ss_pred CeEEEEecCCCC-HHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcH
Confidence 479999999999 99999999863 121111 12322222 11221 12346789999999986
Q ss_pred cccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHH
Q 028595 65 DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEE 144 (207)
Q Consensus 65 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~ 144 (207)
.+..........+|++++|+|+++....... ..+. .... .+.|+++++||+|+...... ....++.++
T Consensus 80 ~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~-~~~~-~~~~--~~~~~iiv~NK~Dl~~~~~~--------~~~~~~~~~ 147 (192)
T cd01889 80 SLIRTIIGGAQIIDLMLLVVDATKGIQTQTA-ECLV-IGEI--LCKKLIVVLNKIDLIPEEER--------ERKIEKMKK 147 (192)
T ss_pred HHHHHHHHHHhhCCEEEEEEECCCCccHHHH-HHHH-HHHH--cCCCEEEEEECcccCCHHHH--------HHHHHHHHH
Confidence 5433222334568999999999885444432 1221 1121 26799999999998643210 002233332
Q ss_pred HHH-H------hCCcEEEEeccCCCCCHHHHHHHHHHHHhCCC
Q 028595 145 LRK-Q------IGASYYIECSSKTQQNVKAVFDAAIKVVIKPP 180 (207)
Q Consensus 145 ~~~-~------~~~~~~~e~Sa~~~~~i~~~f~~i~~~~~~~~ 180 (207)
... . .+. +++++||++|+|+++++.++..++..+.
T Consensus 148 ~l~~~~~~~~~~~~-~vi~iSa~~g~gi~~L~~~l~~~~~~~~ 189 (192)
T cd01889 148 KLQKTLEKTRFKNS-PIIPVSAKPGGGEAELGKDLNNLIVLPL 189 (192)
T ss_pred HHHHHHHhcCcCCC-CEEEEeccCCCCHHHHHHHHHhcccccc
Confidence 221 1 233 8999999999999999999999887653
No 170
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.84 E-value=3.7e-20 Score=132.49 Aligned_cols=145 Identities=20% Similarity=0.207 Sum_probs=104.8
Q ss_pred eeEEEEecccccceeeeeeeccCCCCC--ccccCceeeeeeeEEEECCeEEEEEEEeCCCCcccccc--------cccee
Q 028595 5 AKLACLFATQVTSFLLYVLSVSGRSSI--WDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRL--------RPLSY 74 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~--------~~~~~ 74 (207)
.+|+++|.+++| ||||++++.+.... ..+.++........+..++ ..+.+|||||...+... ...++
T Consensus 2 ~~i~l~G~~~~G-Kstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~ 78 (157)
T cd04164 2 IKVVIVGKPNVG-KSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGG--IPVRLIDTAGIRETEDEIEKIGIERAREAI 78 (157)
T ss_pred cEEEEECCCCCC-HHHHHHHHHCCceEeccCCCCCccceEEEEEEeCC--EEEEEEECCCcCCCcchHHHHHHHHHHHHH
Confidence 589999999999 99999999988642 2222222222233444444 56899999997655322 22456
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEE
Q 028595 75 RGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYY 154 (207)
Q Consensus 75 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 154 (207)
.++|++++|+|++++.+.... ..+.. ....|+++++||+|+.+... . .....+. ++
T Consensus 79 ~~~~~~v~v~d~~~~~~~~~~-~~~~~-----~~~~~vi~v~nK~D~~~~~~-----------~------~~~~~~~-~~ 134 (157)
T cd04164 79 EEADLVLFVIDASRGLDEEDL-EILEL-----PADKPIIVVLNKSDLLPDSE-----------L------LSLLAGK-PI 134 (157)
T ss_pred hhCCEEEEEEECCCCCCHHHH-HHHHh-----hcCCCEEEEEEchhcCCccc-----------c------ccccCCC-ce
Confidence 789999999999998888776 33332 24799999999999875442 1 2233344 89
Q ss_pred EEeccCCCCCHHHHHHHHHHHH
Q 028595 155 IECSSKTQQNVKAVFDAAIKVV 176 (207)
Q Consensus 155 ~e~Sa~~~~~i~~~f~~i~~~~ 176 (207)
+++||+++.|++++++++.+.+
T Consensus 135 ~~~Sa~~~~~v~~l~~~l~~~~ 156 (157)
T cd04164 135 IAISAKTGEGLDELKEALLELA 156 (157)
T ss_pred EEEECCCCCCHHHHHHHHHHhh
Confidence 9999999999999999987754
No 171
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.84 E-value=3.4e-20 Score=157.18 Aligned_cols=152 Identities=14% Similarity=0.180 Sum_probs=108.5
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEE
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 82 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~ 82 (207)
..+|+++|..++| ||||+++|.+.++...+.+.++... ...+..++. ..+.+|||||++.|..++...+..+|++|+
T Consensus 87 ~p~V~I~Ghvd~G-KTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~~-~~i~~iDTPGhe~F~~~r~rga~~aDiaIL 164 (587)
T TIGR00487 87 PPVVTIMGHVDHG-KTSLLDSIRKTKVAQGEAGGITQHIGAYHVENEDG-KMITFLDTPGHEAFTSMRARGAKVTDIVVL 164 (587)
T ss_pred CCEEEEECCCCCC-HHHHHHHHHhCCcccccCCceeecceEEEEEECCC-cEEEEEECCCCcchhhHHHhhhccCCEEEE
Confidence 3689999999999 9999999998887665544443332 223444332 268899999999999999989999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhC-------C-cEE
Q 028595 83 AFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG-------A-SYY 154 (207)
Q Consensus 83 v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-------~-~~~ 154 (207)
|+|+++....+.. . .+..... .++|+++++||+|+.+. ..+.....+..++ . .++
T Consensus 165 VVda~dgv~~qT~-e-~i~~~~~--~~vPiIVviNKiDl~~~-------------~~e~v~~~L~~~g~~~~~~~~~~~~ 227 (587)
T TIGR00487 165 VVAADDGVMPQTI-E-AISHAKA--ANVPIIVAINKIDKPEA-------------NPDRVKQELSEYGLVPEDWGGDTIF 227 (587)
T ss_pred EEECCCCCCHhHH-H-HHHHHHH--cCCCEEEEEECcccccC-------------CHHHHHHHHHHhhhhHHhcCCCceE
Confidence 9999874332222 1 1122222 37999999999998643 2223333333322 1 378
Q ss_pred EEeccCCCCCHHHHHHHHHH
Q 028595 155 IECSSKTQQNVKAVFDAAIK 174 (207)
Q Consensus 155 ~e~Sa~~~~~i~~~f~~i~~ 174 (207)
+++||++|+|++++|+++..
T Consensus 228 v~iSAktGeGI~eLl~~I~~ 247 (587)
T TIGR00487 228 VPVSALTGDGIDELLDMILL 247 (587)
T ss_pred EEEECCCCCChHHHHHhhhh
Confidence 99999999999999999874
No 172
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.84 E-value=2.3e-20 Score=134.54 Aligned_cols=157 Identities=15% Similarity=0.083 Sum_probs=106.5
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccc--------cccceec
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNR--------LRPLSYR 75 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~--------~~~~~~~ 75 (207)
..+|+++|.+++| ||||++++.+...........................+.+|||||...... .....+.
T Consensus 3 ~~~i~~~G~~g~G-Kttl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~ 81 (168)
T cd04163 3 SGFVAIVGRPNVG-KSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALK 81 (168)
T ss_pred eeEEEEECCCCCC-HHHHHHHHhCCceEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHH
Confidence 3589999999999 999999999876532221111111222222233346788999999754332 2234577
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEE
Q 028595 76 GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYI 155 (207)
Q Consensus 76 ~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 155 (207)
.+|++++|+|++++.+... ..+...+... +.|+++++||+|+...... ..+....+....+..+++
T Consensus 82 ~~d~i~~v~d~~~~~~~~~--~~~~~~~~~~--~~~~iiv~nK~Dl~~~~~~----------~~~~~~~~~~~~~~~~~~ 147 (168)
T cd04163 82 DVDLVLFVVDASEPIGEGD--EFILELLKKS--KTPVILVLNKIDLVKDKED----------LLPLLEKLKELGPFAEIF 147 (168)
T ss_pred hCCEEEEEEECCCccCchH--HHHHHHHHHh--CCCEEEEEEchhccccHHH----------HHHHHHHHHhccCCCceE
Confidence 8999999999998722222 2344444432 6899999999999743331 344455555555545899
Q ss_pred EeccCCCCCHHHHHHHHHHH
Q 028595 156 ECSSKTQQNVKAVFDAAIKV 175 (207)
Q Consensus 156 e~Sa~~~~~i~~~f~~i~~~ 175 (207)
++|++++.+++++++.|.+.
T Consensus 148 ~~s~~~~~~~~~l~~~l~~~ 167 (168)
T cd04163 148 PISALKGENVDELLEEIVKY 167 (168)
T ss_pred EEEeccCCChHHHHHHHHhh
Confidence 99999999999999999764
No 173
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.83 E-value=2.6e-20 Score=138.60 Aligned_cols=160 Identities=18% Similarity=0.060 Sum_probs=108.0
Q ss_pred cceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCc----------cccccccc
Q 028595 3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQE----------DYNRLRPL 72 (207)
Q Consensus 3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~----------~~~~~~~~ 72 (207)
...+|+++|.+++| ||||++++++.++...+.++.+.+.......- ...+.+|||||.. .+..+...
T Consensus 23 ~~~~v~ivG~~~~G-KSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~--~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~ 99 (196)
T PRK00454 23 DGPEIAFAGRSNVG-KSSLINALTNRKNLARTSKTPGRTQLINFFEV--NDKLRLVDLPGYGYAKVSKEEKEKWQKLIEE 99 (196)
T ss_pred CCCEEEEEcCCCCC-HHHHHHHHhCCCCcccccCCCCceeEEEEEec--CCeEEEeCCCCCCCcCCCchHHHHHHHHHHH
Confidence 35789999999999 99999999998766666667665443332211 3678999999943 23333444
Q ss_pred eecC---CcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHh
Q 028595 73 SYRG---ADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI 149 (207)
Q Consensus 73 ~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 149 (207)
+++. .+++++|+|.+++.+.... .+...+.. .+.|+++++||+|+....+. ....+.+..+....
T Consensus 100 ~~~~~~~~~~~~~v~d~~~~~~~~~~--~i~~~l~~--~~~~~iiv~nK~Dl~~~~~~--------~~~~~~i~~~l~~~ 167 (196)
T PRK00454 100 YLRTRENLKGVVLLIDSRHPLKELDL--QMIEWLKE--YGIPVLIVLTKADKLKKGER--------KKQLKKVRKALKFG 167 (196)
T ss_pred HHHhCccceEEEEEEecCCCCCHHHH--HHHHHHHH--cCCcEEEEEECcccCCHHHH--------HHHHHHHHHHHHhc
Confidence 5554 3678889998876544332 22233332 37899999999998654321 01223344444444
Q ss_pred CCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 028595 150 GASYYIECSSKTQQNVKAVFDAAIKVVIK 178 (207)
Q Consensus 150 ~~~~~~e~Sa~~~~~i~~~f~~i~~~~~~ 178 (207)
.. +++++||+++.|++++|+.+.+.+.+
T Consensus 168 ~~-~~~~~Sa~~~~gi~~l~~~i~~~~~~ 195 (196)
T PRK00454 168 DD-EVILFSSLKKQGIDELRAAIAKWLAE 195 (196)
T ss_pred CC-ceEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 44 88999999999999999999876643
No 174
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.83 E-value=6.1e-20 Score=152.10 Aligned_cols=152 Identities=19% Similarity=0.210 Sum_probs=109.6
Q ss_pred eEEEEecccccceeeeeeeccCCCC--CccccCceeeeeeeEEEECCeEEEEEEEeCCCCc--------cccccccceec
Q 028595 6 KLACLFATQVTSFLLYVLSVSGRSS--IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQE--------DYNRLRPLSYR 75 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~--------~~~~~~~~~~~ 75 (207)
+|+++|.++|| ||||+|+|++... ...+..+..+.....+..++. .+.+|||||.. .+......+++
T Consensus 1 ~i~ivG~~nvG-KStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~~~--~~~liDTpG~~~~~~~~~~~~~~~~~~~~~ 77 (429)
T TIGR03594 1 VVAIVGRPNVG-KSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWGGR--EFILIDTGGIEEDDDGLDKQIREQAEIAIE 77 (429)
T ss_pred CEEEECCCCCC-HHHHHHHHhCCCcceecCCCCcccCceEEEEEECCe--EEEEEECCCCCCcchhHHHHHHHHHHHHHh
Confidence 58999999999 9999999998763 233333333334445555664 58999999963 23344556788
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEE
Q 028595 76 GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYI 155 (207)
Q Consensus 76 ~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 155 (207)
.+|++++|+|.++..+..+. .+...+.+ .+.|+++|+||+|+.+... . ..+ ...+|..+++
T Consensus 78 ~ad~vl~vvD~~~~~~~~d~--~i~~~l~~--~~~piilVvNK~D~~~~~~-----------~---~~~-~~~lg~~~~~ 138 (429)
T TIGR03594 78 EADVILFVVDGREGLTPEDE--EIAKWLRK--SGKPVILVANKIDGKKEDA-----------V---AAE-FYSLGFGEPI 138 (429)
T ss_pred hCCEEEEEEeCCCCCCHHHH--HHHHHHHH--hCCCEEEEEECccCCcccc-----------c---HHH-HHhcCCCCeE
Confidence 99999999999886544432 34444443 3789999999999865432 1 112 3456766899
Q ss_pred EeccCCCCCHHHHHHHHHHHHhCC
Q 028595 156 ECSSKTQQNVKAVFDAAIKVVIKP 179 (207)
Q Consensus 156 e~Sa~~~~~i~~~f~~i~~~~~~~ 179 (207)
++||.+|.|+.++++++.+.+...
T Consensus 139 ~vSa~~g~gv~~ll~~i~~~l~~~ 162 (429)
T TIGR03594 139 PISAEHGRGIGDLLDAILELLPEE 162 (429)
T ss_pred EEeCCcCCChHHHHHHHHHhcCcc
Confidence 999999999999999999887553
No 175
>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=1.2e-19 Score=123.51 Aligned_cols=159 Identities=11% Similarity=0.054 Sum_probs=123.3
Q ss_pred cceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEE
Q 028595 3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 82 (207)
Q Consensus 3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~ 82 (207)
....+.++|-.+.| ||+++.++--++ .....||++.... .+..++..+++||.+|+-..+.+|+.||.++|++|+
T Consensus 17 ~e~rililgldGaG-kttIlyrlqvge-vvttkPtigfnve---~v~yKNLk~~vwdLggqtSirPyWRcYy~dt~avIy 91 (182)
T KOG0072|consen 17 REMRILILGLDGAG-KTTILYRLQVGE-VVTTKPTIGFNVE---TVPYKNLKFQVWDLGGQTSIRPYWRCYYADTDAVIY 91 (182)
T ss_pred cceEEEEeeccCCC-eeEEEEEcccCc-ccccCCCCCcCcc---ccccccccceeeEccCcccccHHHHHHhcccceEEE
Confidence 45679999999999 999999998776 3456788764432 223467899999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHH-----HHHHhCCcEEEE
Q 028595 83 AFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEE-----LRKQIGASYYIE 156 (207)
Q Consensus 83 v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~~~~~~~~e 156 (207)
|.|.+|++........++.++.+.. ....+++++||.|...... ..++.. -.+..- ..+++
T Consensus 92 VVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~t------------~~E~~~~L~l~~Lk~r~-~~Iv~ 158 (182)
T KOG0072|consen 92 VVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGALT------------RSEVLKMLGLQKLKDRI-WQIVK 158 (182)
T ss_pred EEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhhh------------HHHHHHHhChHHHhhhe-eEEEe
Confidence 9999999888777667777776544 5678899999999865432 222111 111112 37899
Q ss_pred eccCCCCCHHHHHHHHHHHHhCC
Q 028595 157 CSSKTQQNVKAVFDAAIKVVIKP 179 (207)
Q Consensus 157 ~Sa~~~~~i~~~f~~i~~~~~~~ 179 (207)
+||.+|+|++++++|+.+.+..+
T Consensus 159 tSA~kg~Gld~~~DWL~~~l~~~ 181 (182)
T KOG0072|consen 159 TSAVKGEGLDPAMDWLQRPLKSR 181 (182)
T ss_pred eccccccCCcHHHHHHHHHHhcc
Confidence 99999999999999999887653
No 176
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.83 E-value=5.7e-20 Score=151.93 Aligned_cols=162 Identities=15% Similarity=0.088 Sum_probs=109.5
Q ss_pred cceeEEEEecccccceeeeeeeccCCCCC-ccccCceeeeeeeEEEECCeEEEEEEEeCCCCcc----ccccc---ccee
Q 028595 3 LLAKLACLFATQVTSFLLYVLSVSGRSSI-WDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED----YNRLR---PLSY 74 (207)
Q Consensus 3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~----~~~~~---~~~~ 74 (207)
....|+++|.+++| ||||+|+|++.+.. ..|.-|+.......+..++ ..+.+||+||... ...+. -.++
T Consensus 158 ~~adV~LVG~PNAG-KSTLln~Ls~akpkIadypfTTl~P~lGvv~~~~--~~f~laDtPGliegas~g~gLg~~fLrhi 234 (500)
T PRK12296 158 SVADVGLVGFPSAG-KSSLISALSAAKPKIADYPFTTLVPNLGVVQAGD--TRFTVADVPGLIPGASEGKGLGLDFLRHI 234 (500)
T ss_pred ccceEEEEEcCCCC-HHHHHHHHhcCCccccccCcccccceEEEEEECC--eEEEEEECCCCccccchhhHHHHHHHHHH
Confidence 35789999999999 99999999987542 2333333222233444444 5789999999532 11221 2245
Q ss_pred cCCcEEEEEEeCCCh----hhHHHHHHHHHHHHhhcC------------CCCcEEEEeeCCCcccCcccccCCCCCcccC
Q 028595 75 RGADVFVLAFSLVSR----ASYENVLKKWIPELQHYS------------PGVPVVLVGTKLDLREDKHYLADHPGLVPVT 138 (207)
Q Consensus 75 ~~~d~~i~v~d~~~~----~s~~~~~~~~~~~i~~~~------------~~~piivv~nK~D~~~~~~~~~~~~~~~~v~ 138 (207)
.++|++|+|+|+++. +.+.++ ..+..++..+. .+.|++||+||+|+.+... .
T Consensus 235 eradvLv~VVD~s~~e~~rdp~~d~-~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~e-----------l 302 (500)
T PRK12296 235 ERCAVLVHVVDCATLEPGRDPLSDI-DALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARE-----------L 302 (500)
T ss_pred HhcCEEEEEECCcccccccCchhhH-HHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHH-----------H
Confidence 679999999999863 344444 44444444332 3689999999999965432 2
Q ss_pred HHHHHHHHHHhCCcEEEEeccCCCCCHHHHHHHHHHHHhCCC
Q 028595 139 TAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPP 180 (207)
Q Consensus 139 ~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i~~~~~~~~ 180 (207)
.+.........++ +++++||++++|+++++.++.+.+...+
T Consensus 303 ~e~l~~~l~~~g~-~Vf~ISA~tgeGLdEL~~~L~ell~~~r 343 (500)
T PRK12296 303 AEFVRPELEARGW-PVFEVSAASREGLRELSFALAELVEEAR 343 (500)
T ss_pred HHHHHHHHHHcCC-eEEEEECCCCCCHHHHHHHHHHHHHhhh
Confidence 2233333444566 8999999999999999999998886543
No 177
>PRK11058 GTPase HflX; Provisional
Probab=99.82 E-value=1.1e-19 Score=149.08 Aligned_cols=156 Identities=15% Similarity=0.084 Sum_probs=106.6
Q ss_pred eeEEEEecccccceeeeeeeccCCCCCcccc-CceeeeeeeEEEECCeEEEEEEEeCCCCccc--ccccc------ceec
Q 028595 5 AKLACLFATQVTSFLLYVLSVSGRSSIWDYI-PTVFDNFSANVVAEGTTVNLGLWDTAGQEDY--NRLRP------LSYR 75 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~--~~~~~------~~~~ 75 (207)
.+|+++|.+|+| ||||+|+|++........ .+.-+.....+.+.+. ..+.+|||+|..+. ..++. ..+.
T Consensus 198 p~ValVG~~NaG-KSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~~-~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~ 275 (426)
T PRK11058 198 PTVSLVGYTNAG-KSTLFNRITEARVYAADQLFATLDPTLRRIDVADV-GETVLADTVGFIRHLPHDLVAAFKATLQETR 275 (426)
T ss_pred CEEEEECCCCCC-HHHHHHHHhCCceeeccCCCCCcCCceEEEEeCCC-CeEEEEecCcccccCCHHHHHHHHHHHHHhh
Confidence 589999999999 999999999876432222 2222222334555542 25679999997432 22222 2367
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEE
Q 028595 76 GADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYY 154 (207)
Q Consensus 76 ~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 154 (207)
.+|++++|+|++++.+...+ ..|...+.... .++|+++|+||+|+.+... .. .. ....+...+
T Consensus 276 ~ADlIL~VvDaS~~~~~e~l-~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~-----------~~--~~--~~~~~~~~~ 339 (426)
T PRK11058 276 QATLLLHVVDAADVRVQENI-EAVNTVLEEIDAHEIPTLLVMNKIDMLDDFE-----------PR--ID--RDEENKPIR 339 (426)
T ss_pred cCCEEEEEEeCCCccHHHHH-HHHHHHHHHhccCCCCEEEEEEcccCCCchh-----------HH--HH--HHhcCCCce
Confidence 89999999999999887776 44444444433 4799999999999864321 11 11 112344235
Q ss_pred EEeccCCCCCHHHHHHHHHHHHhC
Q 028595 155 IECSSKTQQNVKAVFDAAIKVVIK 178 (207)
Q Consensus 155 ~e~Sa~~~~~i~~~f~~i~~~~~~ 178 (207)
+.+||++|.|++++++++.+.+..
T Consensus 340 v~ISAktG~GIdeL~e~I~~~l~~ 363 (426)
T PRK11058 340 VWLSAQTGAGIPLLFQALTERLSG 363 (426)
T ss_pred EEEeCCCCCCHHHHHHHHHHHhhh
Confidence 889999999999999999998853
No 178
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.82 E-value=1.9e-19 Score=130.82 Aligned_cols=155 Identities=23% Similarity=0.241 Sum_probs=104.5
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCC--ccccCceeeeeeeEEEECCeEEEEEEEeCCCCcccccc-----------c
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSI--WDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRL-----------R 70 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~-----------~ 70 (207)
..+|+++|.+++| ||||++++++.... .....+........+..++. .+.+|||||....... .
T Consensus 2 ~~~i~i~G~~~~G-Kstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~iiDtpG~~~~~~~~~~~e~~~~~~~ 78 (174)
T cd01895 2 PIRIAIIGRPNVG-KSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGK--KYTLIDTAGIRRKGKVEEGIEKYSVLRT 78 (174)
T ss_pred CcEEEEEcCCCCC-HHHHHHHHhCccceeccCCCCCccCceeeEEEECCe--eEEEEECCCCccccchhccHHHHHHHHH
Confidence 3689999999999 99999999987632 22222322223334455554 4679999997543110 1
Q ss_pred cceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHH-HHHHHHHh
Q 028595 71 PLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQ-GEELRKQI 149 (207)
Q Consensus 71 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~ 149 (207)
..++.++|++++|+|.+++.+.... .+...+.. .+.|+++++||+|+.+.... ..+. ...+.+.+
T Consensus 79 ~~~~~~~d~vi~v~d~~~~~~~~~~--~~~~~~~~--~~~~~iiv~nK~Dl~~~~~~----------~~~~~~~~~~~~~ 144 (174)
T cd01895 79 LKAIERADVVLLVIDATEGITEQDL--RIAGLILE--EGKALVIVVNKWDLVEKDSK----------TMKEFKKEIRRKL 144 (174)
T ss_pred HHHHhhcCeEEEEEeCCCCcchhHH--HHHHHHHh--cCCCEEEEEeccccCCccHH----------HHHHHHHHHHhhc
Confidence 2345689999999999998776654 33333333 36899999999998765311 2222 22233333
Q ss_pred C---CcEEEEeccCCCCCHHHHHHHHHHH
Q 028595 150 G---ASYYIECSSKTQQNVKAVFDAAIKV 175 (207)
Q Consensus 150 ~---~~~~~e~Sa~~~~~i~~~f~~i~~~ 175 (207)
+ ..+++++||++++|++++++.+.+.
T Consensus 145 ~~~~~~~~~~~Sa~~~~~i~~~~~~l~~~ 173 (174)
T cd01895 145 PFLDYAPIVFISALTGQGVDKLFDAIDEV 173 (174)
T ss_pred ccccCCceEEEeccCCCCHHHHHHHHHHh
Confidence 2 3489999999999999999998764
No 179
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.82 E-value=7.5e-20 Score=124.14 Aligned_cols=153 Identities=18% Similarity=0.230 Sum_probs=119.7
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEE
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA 83 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v 83 (207)
.++|.++|-.++| ||||+..+.+.. .....||.|-. .+.+..+| .+.+++||++||...+..|..||.+.|++|+|
T Consensus 17 EirilllGldnAG-KTT~LKqL~sED-~~hltpT~GFn-~k~v~~~g-~f~LnvwDiGGqr~IRpyWsNYyenvd~lIyV 92 (185)
T KOG0074|consen 17 EIRILLLGLDNAG-KTTFLKQLKSED-PRHLTPTNGFN-TKKVEYDG-TFHLNVWDIGGQRGIRPYWSNYYENVDGLIYV 92 (185)
T ss_pred eEEEEEEecCCCc-chhHHHHHccCC-hhhccccCCcc-eEEEeecC-cEEEEEEecCCccccchhhhhhhhccceEEEE
Confidence 5799999999999 999999997665 34556777632 33444444 78999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCC-------cEEE
Q 028595 84 FSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA-------SYYI 155 (207)
Q Consensus 84 ~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-------~~~~ 155 (207)
.|.+|..-++++...+.++++... ..+|+.+.+||.|+.-.- .++..+..++. -.+-
T Consensus 93 IDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa---------------~~eeia~klnl~~lrdRswhIq 157 (185)
T KOG0074|consen 93 IDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAA---------------KVEEIALKLNLAGLRDRSWHIQ 157 (185)
T ss_pred EeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhc---------------chHHHHHhcchhhhhhceEEee
Confidence 999999999999777777776544 689999999999985432 22333333332 1345
Q ss_pred EeccCCCCCHHHHHHHHHHH
Q 028595 156 ECSSKTQQNVKAVFDAAIKV 175 (207)
Q Consensus 156 e~Sa~~~~~i~~~f~~i~~~ 175 (207)
++||++++++.....++...
T Consensus 158 ~csals~eg~~dg~~wv~sn 177 (185)
T KOG0074|consen 158 ECSALSLEGSTDGSDWVQSN 177 (185)
T ss_pred eCccccccCccCcchhhhcC
Confidence 79999999999988887543
No 180
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.82 E-value=1.1e-19 Score=154.90 Aligned_cols=162 Identities=15% Similarity=0.139 Sum_probs=117.0
Q ss_pred ccceeEEEEecccccceeeeeeeccCCC--CC-----cccc------Cceeeee-eeEEEE-----CCeEEEEEEEeCCC
Q 028595 2 ELLAKLACLFATQVTSFLLYVLSVSGRS--SI-----WDYI------PTVFDNF-SANVVA-----EGTTVNLGLWDTAG 62 (207)
Q Consensus 2 ~~~~ki~iiG~~~~GgKssli~~l~~~~--~~-----~~~~------~t~~~~~-~~~~~~-----~~~~~~l~i~D~~G 62 (207)
+...+++++|..++| ||||+.+|+... +. ..+. .+.|.++ ...+.+ ++..+.+++|||||
T Consensus 5 ~~iRNi~IiGhvd~G-KTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPG 83 (600)
T PRK05433 5 KNIRNFSIIAHIDHG-KSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPG 83 (600)
T ss_pred ccCCEEEEECCCCCC-HHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCC
Confidence 345799999999999 999999997531 11 1111 1112222 111211 56689999999999
Q ss_pred CccccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHH
Q 028595 63 QEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQG 142 (207)
Q Consensus 63 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~ 142 (207)
+.++...+..+++.+|++|+|+|+++....+.. ..|..... .+.|+++|+||+|+.... .....
T Consensus 84 h~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~-~~~~~~~~---~~lpiIvViNKiDl~~a~------------~~~v~ 147 (600)
T PRK05433 84 HVDFSYEVSRSLAACEGALLVVDASQGVEAQTL-ANVYLALE---NDLEIIPVLNKIDLPAAD------------PERVK 147 (600)
T ss_pred cHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHH-HHHHHHHH---CCCCEEEEEECCCCCccc------------HHHHH
Confidence 999998899999999999999999987666655 44543332 378999999999986432 22233
Q ss_pred HHHHHHhCCc--EEEEeccCCCCCHHHHHHHHHHHHhCCC
Q 028595 143 EELRKQIGAS--YYIECSSKTQQNVKAVFDAAIKVVIKPP 180 (207)
Q Consensus 143 ~~~~~~~~~~--~~~e~Sa~~~~~i~~~f~~i~~~~~~~~ 180 (207)
.++.+.+++. .++.+||++|.|++++++++++.+..+.
T Consensus 148 ~ei~~~lg~~~~~vi~iSAktG~GI~~Ll~~I~~~lp~P~ 187 (600)
T PRK05433 148 QEIEDVIGIDASDAVLVSAKTGIGIEEVLEAIVERIPPPK 187 (600)
T ss_pred HHHHHHhCCCcceEEEEecCCCCCHHHHHHHHHHhCcccc
Confidence 4555556652 4899999999999999999999887664
No 181
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.81 E-value=1.2e-19 Score=156.09 Aligned_cols=159 Identities=12% Similarity=0.153 Sum_probs=110.8
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCCccccCceee---eeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEE
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFD---NFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF 80 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~---~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ 80 (207)
...|+++|..++| ||||+++|.+..+.....++++. .+...+..++....+.+|||||++.|..++..++..+|++
T Consensus 244 ~p~V~IvGhvdvG-KTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~F~~mr~rg~~~aDia 322 (742)
T CHL00189 244 PPIVTILGHVDHG-KTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEAFSSMRSRGANVTDIA 322 (742)
T ss_pred CCEEEEECCCCCC-HHHHHHHHHhccCccccCCccccccceEEEEEEecCCceEEEEEECCcHHHHHHHHHHHHHHCCEE
Confidence 4689999999999 99999999988765443333321 1233334445568899999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHH---HHHHhC-CcEEEE
Q 028595 81 VLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEE---LRKQIG-ASYYIE 156 (207)
Q Consensus 81 i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~~-~~~~~e 156 (207)
|+|+|+++....+.. .. +..+.. .++|+++++||+|+...... ....+... +...++ ..++++
T Consensus 323 ILVVDA~dGv~~QT~-E~-I~~~k~--~~iPiIVViNKiDl~~~~~e---------~v~~eL~~~~ll~e~~g~~vpvv~ 389 (742)
T CHL00189 323 ILIIAADDGVKPQTI-EA-INYIQA--ANVPIIVAINKIDKANANTE---------RIKQQLAKYNLIPEKWGGDTPMIP 389 (742)
T ss_pred EEEEECcCCCChhhH-HH-HHHHHh--cCceEEEEEECCCccccCHH---------HHHHHHHHhccchHhhCCCceEEE
Confidence 999999874333222 11 122222 37999999999998653210 00111111 123333 248999
Q ss_pred eccCCCCCHHHHHHHHHHHH
Q 028595 157 CSSKTQQNVKAVFDAAIKVV 176 (207)
Q Consensus 157 ~Sa~~~~~i~~~f~~i~~~~ 176 (207)
+||++|.|++++|+.+....
T Consensus 390 VSAktG~GIdeLle~I~~l~ 409 (742)
T CHL00189 390 ISASQGTNIDKLLETILLLA 409 (742)
T ss_pred EECCCCCCHHHHHHhhhhhh
Confidence 99999999999999988764
No 182
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.81 E-value=1.5e-19 Score=153.93 Aligned_cols=145 Identities=16% Similarity=0.155 Sum_probs=107.3
Q ss_pred ecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCcccccc------cccee--cCCcEEE
Q 028595 11 FATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRL------RPLSY--RGADVFV 81 (207)
Q Consensus 11 G~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~------~~~~~--~~~d~~i 81 (207)
|.+|+| ||||+|++++.+......|+.+.+. ...+..++. .+.+|||||++.+... .+.++ .++|+++
T Consensus 1 G~pNvG-KSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~~~--~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvvI 77 (591)
T TIGR00437 1 GNPNVG-KSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQGE--DIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLVV 77 (591)
T ss_pred CCCCCC-HHHHHHHHhCCCCeecCCCCeEEEEEEEEEEECCe--EEEEEECCCccccCccchHHHHHHHHHhhcCCCEEE
Confidence 789999 9999999998876444445444433 335555653 5789999999887654 23343 3689999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCC
Q 028595 82 LAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT 161 (207)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 161 (207)
+|+|.++.+... .+..++.+ .++|+++++||+|+.+.+. ...+.+.+++.+|. +++++||++
T Consensus 78 ~VvDat~ler~l----~l~~ql~~--~~~PiIIVlNK~Dl~~~~~-----------i~~d~~~L~~~lg~-pvv~tSA~t 139 (591)
T TIGR00437 78 NVVDASNLERNL----YLTLQLLE--LGIPMILALNLVDEAEKKG-----------IRIDEEKLEERLGV-PVVPTSATE 139 (591)
T ss_pred EEecCCcchhhH----HHHHHHHh--cCCCEEEEEehhHHHHhCC-----------ChhhHHHHHHHcCC-CEEEEECCC
Confidence 999999855432 22223322 3799999999999865543 23457888888997 999999999
Q ss_pred CCCHHHHHHHHHHHH
Q 028595 162 QQNVKAVFDAAIKVV 176 (207)
Q Consensus 162 ~~~i~~~f~~i~~~~ 176 (207)
|+|++++|+.+.+..
T Consensus 140 g~Gi~eL~~~i~~~~ 154 (591)
T TIGR00437 140 GRGIERLKDAIRKAI 154 (591)
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999998764
No 183
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.81 E-value=4.8e-20 Score=135.43 Aligned_cols=148 Identities=15% Similarity=0.066 Sum_probs=100.0
Q ss_pred cceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeE-EEECCeEEEEEEEeCCCCc----------ccccccc
Q 028595 3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSAN-VVAEGTTVNLGLWDTAGQE----------DYNRLRP 71 (207)
Q Consensus 3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~l~i~D~~G~~----------~~~~~~~ 71 (207)
...+|+++|.+++| ||||+|++++..+...+.++.+.+.... +..++ .+.+|||||.. .+..+..
T Consensus 17 ~~~~i~ivG~~~~G-KStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpG~~~~~~~~~~~~~~~~~~~ 92 (179)
T TIGR03598 17 DGPEIAFAGRSNVG-KSSLINALTNRKKLARTSKTPGRTQLINFFEVND---GFRLVDLPGYGYAKVSKEEKEKWQKLIE 92 (179)
T ss_pred CCCEEEEEcCCCCC-HHHHHHHHhCCCCcccccCCCCcceEEEEEEeCC---cEEEEeCCCCccccCChhHHHHHHHHHH
Confidence 35799999999999 9999999998875555556655444332 22232 58899999953 2233333
Q ss_pred ceecC---CcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHH
Q 028595 72 LSYRG---ADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ 148 (207)
Q Consensus 72 ~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 148 (207)
.|++. ++++++|+|.+++-+..+. .++..+.. .+.|+++++||+|+.+.... ....+++++.+..
T Consensus 93 ~~l~~~~~~~~ii~vvd~~~~~~~~~~--~~~~~~~~--~~~pviiv~nK~D~~~~~~~--------~~~~~~i~~~l~~ 160 (179)
T TIGR03598 93 EYLEKRENLKGVVLLMDIRHPLKELDL--EMLEWLRE--RGIPVLIVLTKADKLKKSEL--------NKQLKKIKKALKK 160 (179)
T ss_pred HHHHhChhhcEEEEEecCCCCCCHHHH--HHHHHHHH--cCCCEEEEEECcccCCHHHH--------HHHHHHHHHHHhh
Confidence 45543 5799999999886555554 33444443 27899999999998643321 0133455555555
Q ss_pred hCC-cEEEEeccCCCCCHH
Q 028595 149 IGA-SYYIECSSKTQQNVK 166 (207)
Q Consensus 149 ~~~-~~~~e~Sa~~~~~i~ 166 (207)
.+. .+++++||++|+|++
T Consensus 161 ~~~~~~v~~~Sa~~g~gi~ 179 (179)
T TIGR03598 161 DADDPSVQLFSSLKKTGID 179 (179)
T ss_pred ccCCCceEEEECCCCCCCC
Confidence 542 279999999999974
No 184
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.81 E-value=2e-19 Score=153.01 Aligned_cols=156 Identities=15% Similarity=0.087 Sum_probs=114.5
Q ss_pred eEEEEecccccceeeeeeeccCC---CCCccccCceeeeee-eEEEECCeEEEEEEEeCCCCccccccccceecCCcEEE
Q 028595 6 KLACLFATQVTSFLLYVLSVSGR---SSIWDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 81 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~~---~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i 81 (207)
.|+++|..++| ||||+++|++. .+..++.++++.... ..+..++ ..+.+||+||+++|......++.++|+++
T Consensus 2 ~I~iiG~~d~G-KTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~--~~v~~iDtPGhe~f~~~~~~g~~~aD~aI 78 (581)
T TIGR00475 2 IIATAGHVDHG-KTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPD--YRLGFIDVPGHEKFISNAIAGGGGIDAAL 78 (581)
T ss_pred EEEEECCCCCC-HHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCC--EEEEEEECCCHHHHHHHHHhhhccCCEEE
Confidence 58999999999 99999999963 333444455544442 2344454 78899999999998877777889999999
Q ss_pred EEEeCCC---hhhHHHHHHHHHHHHhhcCCCCc-EEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhC---CcEE
Q 028595 82 LAFSLVS---RASYENVLKKWIPELQHYSPGVP-VVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG---ASYY 154 (207)
Q Consensus 82 ~v~d~~~---~~s~~~~~~~~~~~i~~~~~~~p-iivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---~~~~ 154 (207)
+|+|+++ +++.+.+ .++ .. .++| +++|+||+|+.+.... ....++++.+++.++ ..++
T Consensus 79 LVVDa~~G~~~qT~ehl--~il---~~--lgi~~iIVVlNK~Dlv~~~~~--------~~~~~ei~~~l~~~~~~~~~~i 143 (581)
T TIGR00475 79 LVVDADEGVMTQTGEHL--AVL---DL--LGIPHTIVVITKADRVNEEEI--------KRTEMFMKQILNSYIFLKNAKI 143 (581)
T ss_pred EEEECCCCCcHHHHHHH--HHH---HH--cCCCeEEEEEECCCCCCHHHH--------HHHHHHHHHHHHHhCCCCCCcE
Confidence 9999998 5555554 222 22 2677 9999999999754321 012345667776653 2389
Q ss_pred EEeccCCCCCHHHHHHHHHHHHhCC
Q 028595 155 IECSSKTQQNVKAVFDAAIKVVIKP 179 (207)
Q Consensus 155 ~e~Sa~~~~~i~~~f~~i~~~~~~~ 179 (207)
+++||++|+|+++++..+...+...
T Consensus 144 i~vSA~tG~GI~eL~~~L~~l~~~~ 168 (581)
T TIGR00475 144 FKTSAKTGQGIGELKKELKNLLESL 168 (581)
T ss_pred EEEeCCCCCCchhHHHHHHHHHHhC
Confidence 9999999999999999988776544
No 185
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.81 E-value=2.9e-19 Score=145.12 Aligned_cols=162 Identities=19% Similarity=0.162 Sum_probs=114.5
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCC-ccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccc----cc---cceec
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSI-WDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNR----LR---PLSYR 75 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~----~~---~~~~~ 75 (207)
..-|+++|.+|+| ||||+|+|++.+.. ..|..|+.....-.+..++ ...+.++||||...-.. +. ..++.
T Consensus 159 iadValVG~PNaG-KSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~~-~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~ 236 (390)
T PRK12298 159 LADVGLLGLPNAG-KSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVDD-ERSFVVADIPGLIEGASEGAGLGIRFLKHLE 236 (390)
T ss_pred cccEEEEcCCCCC-HHHHHHHHhCCcccccCCCCCccCcEEEEEEeCC-CcEEEEEeCCCccccccchhhHHHHHHHHHH
Confidence 4579999999999 99999999987642 2333333333333333332 23578999999643211 11 13477
Q ss_pred CCcEEEEEEeCC---ChhhHHHHHHHHHHHHhhcC---CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHh
Q 028595 76 GADVFVLAFSLV---SRASYENVLKKWIPELQHYS---PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI 149 (207)
Q Consensus 76 ~~d~~i~v~d~~---~~~s~~~~~~~~~~~i~~~~---~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 149 (207)
.+|++++|+|++ +.+.++.. ..|++.+..+. .+.|+++|+||+|+..... ..+..+.+.+.+
T Consensus 237 radvlL~VVD~s~~~~~d~~e~~-~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~e-----------l~~~l~~l~~~~ 304 (390)
T PRK12298 237 RCRVLLHLIDIAPIDGSDPVENA-RIIINELEKYSPKLAEKPRWLVFNKIDLLDEEE-----------AEERAKAIVEAL 304 (390)
T ss_pred hCCEEEEEeccCcccccChHHHH-HHHHHHHHhhhhhhcCCCEEEEEeCCccCChHH-----------HHHHHHHHHHHh
Confidence 899999999998 45666666 67777777654 3689999999999865432 234455566655
Q ss_pred CCc-EEEEeccCCCCCHHHHHHHHHHHHhCC
Q 028595 150 GAS-YYIECSSKTQQNVKAVFDAAIKVVIKP 179 (207)
Q Consensus 150 ~~~-~~~e~Sa~~~~~i~~~f~~i~~~~~~~ 179 (207)
+.. +++.+||+++.|++++++.+.+.+...
T Consensus 305 ~~~~~Vi~ISA~tg~GIdeLl~~I~~~L~~~ 335 (390)
T PRK12298 305 GWEGPVYLISAASGLGVKELCWDLMTFIEEN 335 (390)
T ss_pred CCCCCEEEEECCCCcCHHHHHHHHHHHhhhC
Confidence 532 689999999999999999999988654
No 186
>COG1159 Era GTPase [General function prediction only]
Probab=99.81 E-value=1.2e-19 Score=138.56 Aligned_cols=162 Identities=13% Similarity=0.073 Sum_probs=116.9
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccc--------cccceec
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNR--------LRPLSYR 75 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~--------~~~~~~~ 75 (207)
..-|+++|.+|+| ||||+|++++.+.........+.+...+-.+.....++.+.||||-...+. .....+.
T Consensus 6 sGfVaIiGrPNvG-KSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~ 84 (298)
T COG1159 6 SGFVAIIGRPNVG-KSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARSALK 84 (298)
T ss_pred EEEEEEEcCCCCc-HHHHHHHHhcCceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcchHHHHHHHHHHHHHhc
Confidence 3568999999999 999999999999765444444444444333333478899999999544322 2335577
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEE
Q 028595 76 GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYI 155 (207)
Q Consensus 76 ~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 155 (207)
++|+++||.|+++...-.+ ...++.+.. .+.|++++.||+|..++... .......+.........+
T Consensus 85 dvDlilfvvd~~~~~~~~d--~~il~~lk~--~~~pvil~iNKID~~~~~~~----------l~~~~~~~~~~~~f~~iv 150 (298)
T COG1159 85 DVDLILFVVDADEGWGPGD--EFILEQLKK--TKTPVILVVNKIDKVKPKTV----------LLKLIAFLKKLLPFKEIV 150 (298)
T ss_pred cCcEEEEEEeccccCCccH--HHHHHHHhh--cCCCeEEEEEccccCCcHHH----------HHHHHHHHHhhCCcceEE
Confidence 8999999999988544433 244555544 36899999999998776531 233444455555666889
Q ss_pred EeccCCCCCHHHHHHHHHHHHhCCC
Q 028595 156 ECSSKTQQNVKAVFDAAIKVVIKPP 180 (207)
Q Consensus 156 e~Sa~~~~~i~~~f~~i~~~~~~~~ 180 (207)
++||++|.|++.+.+.+...+.+.+
T Consensus 151 piSA~~g~n~~~L~~~i~~~Lpeg~ 175 (298)
T COG1159 151 PISALKGDNVDTLLEIIKEYLPEGP 175 (298)
T ss_pred EeeccccCCHHHHHHHHHHhCCCCC
Confidence 9999999999999999999987654
No 187
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.80 E-value=5.3e-19 Score=153.43 Aligned_cols=154 Identities=14% Similarity=0.204 Sum_probs=107.7
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEE
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 82 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~ 82 (207)
...|+++|..++| ||||+++|.+.++.....+.++... ...+..++ ..+.+|||||++.|..++...+..+|++|+
T Consensus 290 ~pvV~ImGhvd~G-KTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~~--~~ItfiDTPGhe~F~~m~~rga~~aDiaIL 366 (787)
T PRK05306 290 PPVVTIMGHVDHG-KTSLLDAIRKTNVAAGEAGGITQHIGAYQVETNG--GKITFLDTPGHEAFTAMRARGAQVTDIVVL 366 (787)
T ss_pred CCEEEEECCCCCC-HHHHHHHHHhCCccccccCceeeeccEEEEEECC--EEEEEEECCCCccchhHHHhhhhhCCEEEE
Confidence 3579999999999 9999999988876654433332222 22344444 568899999999999999989999999999
Q ss_pred EEeCCCh---hhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHH--HHHHHHHHhC-CcEEEE
Q 028595 83 AFSLVSR---ASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTA--QGEELRKQIG-ASYYIE 156 (207)
Q Consensus 83 v~d~~~~---~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~--~~~~~~~~~~-~~~~~e 156 (207)
|+|+++. ++.+.+ ..+.. .++|+++++||+|+...+.. .+..+ +...+++.++ ..++++
T Consensus 367 VVdAddGv~~qT~e~i-----~~a~~--~~vPiIVviNKiDl~~a~~e--------~V~~eL~~~~~~~e~~g~~vp~vp 431 (787)
T PRK05306 367 VVAADDGVMPQTIEAI-----NHAKA--AGVPIIVAINKIDKPGANPD--------RVKQELSEYGLVPEEWGGDTIFVP 431 (787)
T ss_pred EEECCCCCCHhHHHHH-----HHHHh--cCCcEEEEEECccccccCHH--------HHHHHHHHhcccHHHhCCCceEEE
Confidence 9999884 333332 12222 37999999999999643210 00111 1111233344 138999
Q ss_pred eccCCCCCHHHHHHHHHHH
Q 028595 157 CSSKTQQNVKAVFDAAIKV 175 (207)
Q Consensus 157 ~Sa~~~~~i~~~f~~i~~~ 175 (207)
+||++|.|++++|+++...
T Consensus 432 vSAktG~GI~eLle~I~~~ 450 (787)
T PRK05306 432 VSAKTGEGIDELLEAILLQ 450 (787)
T ss_pred EeCCCCCCchHHHHhhhhh
Confidence 9999999999999998753
No 188
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.80 E-value=2.7e-19 Score=143.70 Aligned_cols=176 Identities=18% Similarity=0.178 Sum_probs=125.8
Q ss_pred eeEEEEecccccceeeeeeeccCCCC--CccccCceeeeeeeEEEECCeEEEEEEEeCCCCcccc---------ccccce
Q 028595 5 AKLACLFATQVTSFLLYVLSVSGRSS--IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYN---------RLRPLS 73 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~---------~~~~~~ 73 (207)
..|+++|.+||| ||||.|+|++.+. .+++.-++.++........+.. +.++||+|-+... ......
T Consensus 4 ~~VAIVGRPNVG-KSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~--f~lIDTgGl~~~~~~~l~~~i~~Qa~~A 80 (444)
T COG1160 4 PVVAIVGRPNVG-KSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGRE--FILIDTGGLDDGDEDELQELIREQALIA 80 (444)
T ss_pred CEEEEECCCCCc-HHHHHHHHhCCeeeEeecCCCCccCCccceeEEcCce--EEEEECCCCCcCCchHHHHHHHHHHHHH
Confidence 579999999999 9999999999985 4566666666665566666644 8899999966432 223456
Q ss_pred ecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcE
Q 028595 74 YRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASY 153 (207)
Q Consensus 74 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 153 (207)
+..||++|||+|....-+..+ ....+.+.. .++|+++|.||+|-... .+.+. -...+|...
T Consensus 81 i~eADvilfvVD~~~Git~~D--~~ia~~Lr~--~~kpviLvvNK~D~~~~--------------e~~~~-efyslG~g~ 141 (444)
T COG1160 81 IEEADVILFVVDGREGITPAD--EEIAKILRR--SKKPVILVVNKIDNLKA--------------EELAY-EFYSLGFGE 141 (444)
T ss_pred HHhCCEEEEEEeCCCCCCHHH--HHHHHHHHh--cCCCEEEEEEcccCchh--------------hhhHH-HHHhcCCCC
Confidence 778999999999987544444 244445542 37999999999996421 22222 234577778
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHhCCCcchhhhcccCCCeEEeeecCCcccc
Q 028595 154 YIECSSKTQQNVKAVFDAAIKVVIKPPQKQKEKKKKQRGCLLNVFCGRNLVR 205 (207)
Q Consensus 154 ~~e~Sa~~~~~i~~~f~~i~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~ 205 (207)
.+.+||..|.|+.++.+++++.+. .....+.... ..+.-....|||++.
T Consensus 142 ~~~ISA~Hg~Gi~dLld~v~~~l~-~~e~~~~~~~--~~~ikiaiiGrPNvG 190 (444)
T COG1160 142 PVPISAEHGRGIGDLLDAVLELLP-PDEEEEEEEE--TDPIKIAIIGRPNVG 190 (444)
T ss_pred ceEeehhhccCHHHHHHHHHhhcC-Cccccccccc--CCceEEEEEeCCCCC
Confidence 999999999999999999999985 2221111111 567777888999864
No 189
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.80 E-value=1.9e-19 Score=156.92 Aligned_cols=156 Identities=18% Similarity=0.159 Sum_probs=111.8
Q ss_pred ceeEEEEecccccceeeeeeeccCCCC--CccccCceeeeeeeEEEECCeEEEEEEEeCCCCccc----------ccc-c
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSS--IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY----------NRL-R 70 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~----------~~~-~ 70 (207)
..||+++|.+++| ||||+|+|++.+. ...+.+|..+.+...+.+++.. +.+|||||..+. ..+ .
T Consensus 450 ~~kI~ivG~~nvG-KSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~~~~--~~liDTaG~~~~~~~~~~~e~~~~~r~ 526 (712)
T PRK09518 450 LRRVALVGRPNVG-KSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEIDGED--WLFIDTAGIKRRQHKLTGAEYYSSLRT 526 (712)
T ss_pred CcEEEEECCCCCC-HHHHHHHHhCccccccCCCCCCCcCcceeEEEECCCE--EEEEECCCcccCcccchhHHHHHHHHH
Confidence 3699999999999 9999999998874 3455556555555566677755 569999996421 111 1
Q ss_pred cceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHH-HHH--
Q 028595 71 PLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEE-LRK-- 147 (207)
Q Consensus 71 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~-~~~-- 147 (207)
..+++.+|++++|+|+++..+.++. .+...+.. .+.|+++|+||+|+.+... .+..+. +..
T Consensus 527 ~~~i~~advvilViDat~~~s~~~~--~i~~~~~~--~~~piIiV~NK~DL~~~~~------------~~~~~~~~~~~l 590 (712)
T PRK09518 527 QAAIERSELALFLFDASQPISEQDL--KVMSMAVD--AGRALVLVFNKWDLMDEFR------------RQRLERLWKTEF 590 (712)
T ss_pred HHHhhcCCEEEEEEECCCCCCHHHH--HHHHHHHH--cCCCEEEEEEchhcCChhH------------HHHHHHHHHHhc
Confidence 2346789999999999999888876 34444433 3799999999999965321 111221 222
Q ss_pred -HhCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 028595 148 -QIGASYYIECSSKTQQNVKAVFDAAIKVVIK 178 (207)
Q Consensus 148 -~~~~~~~~e~Sa~~~~~i~~~f~~i~~~~~~ 178 (207)
.....+.+.+||++|.|++++|+.+.+.+..
T Consensus 591 ~~~~~~~ii~iSAktg~gv~~L~~~i~~~~~~ 622 (712)
T PRK09518 591 DRVTWARRVNLSAKTGWHTNRLAPAMQEALES 622 (712)
T ss_pred cCCCCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 2233467899999999999999999988764
No 190
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.80 E-value=7.9e-19 Score=153.03 Aligned_cols=153 Identities=21% Similarity=0.213 Sum_probs=104.7
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCCc-cccCcee-eeeeeEEEECCeEEEEEEEeCCCCccc--------cccccce
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSIW-DYIPTVF-DNFSANVVAEGTTVNLGLWDTAGQEDY--------NRLRPLS 73 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~-~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~--------~~~~~~~ 73 (207)
..+|+++|.++|| ||||+|+|++.+... ...|.++ +........++ ..+.+|||||.+.. ......+
T Consensus 275 ~~~V~IvG~~nvG-KSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~~--~~~~liDT~G~~~~~~~~~~~~~~~~~~~ 351 (712)
T PRK09518 275 VGVVAIVGRPNVG-KSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAG--TDFKLVDTGGWEADVEGIDSAIASQAQIA 351 (712)
T ss_pred CcEEEEECCCCCC-HHHHHHHHhCCCceeecCCCCeeEEEEEEEEEECC--EEEEEEeCCCcCCCCccHHHHHHHHHHHH
Confidence 4689999999999 999999999876421 2223322 22222334444 46789999997642 2233456
Q ss_pred ecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcE
Q 028595 74 YRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASY 153 (207)
Q Consensus 74 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 153 (207)
+..+|++++|+|.++.-...+ ..|...+.. .+.|+++|+||+|+.... .....+ ..++...
T Consensus 352 ~~~aD~iL~VvDa~~~~~~~d--~~i~~~Lr~--~~~pvIlV~NK~D~~~~~--------------~~~~~~-~~lg~~~ 412 (712)
T PRK09518 352 VSLADAVVFVVDGQVGLTSTD--ERIVRMLRR--AGKPVVLAVNKIDDQASE--------------YDAAEF-WKLGLGE 412 (712)
T ss_pred HHhCCEEEEEEECCCCCCHHH--HHHHHHHHh--cCCCEEEEEECcccccch--------------hhHHHH-HHcCCCC
Confidence 789999999999987433332 345555554 489999999999985321 111222 1234435
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHhC
Q 028595 154 YIECSSKTQQNVKAVFDAAIKVVIK 178 (207)
Q Consensus 154 ~~e~Sa~~~~~i~~~f~~i~~~~~~ 178 (207)
.+++||++|.|+.++|+++++.+..
T Consensus 413 ~~~iSA~~g~GI~eLl~~i~~~l~~ 437 (712)
T PRK09518 413 PYPISAMHGRGVGDLLDEALDSLKV 437 (712)
T ss_pred eEEEECCCCCCchHHHHHHHHhccc
Confidence 6799999999999999999998865
No 191
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.79 E-value=3.1e-19 Score=133.54 Aligned_cols=117 Identities=13% Similarity=0.080 Sum_probs=88.6
Q ss_pred eEEEEecccccceeeeeeeccCCCCCccccCceeeeeee-EEEECCeEEEEEEEeCCCCccccccccceecCC-cEEEEE
Q 028595 6 KLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSA-NVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGA-DVFVLA 83 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~-d~~i~v 83 (207)
.|+++|.+++| ||+|+++|..+.+...+.++ ...+.. ....++....+.+||+||+++++..+..+++++ +++|+|
T Consensus 2 ~vll~G~~~sG-KTsL~~~l~~~~~~~t~~s~-~~~~~~~~~~~~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~V 79 (203)
T cd04105 2 TVLLLGPSDSG-KTALFTKLTTGKYRSTVTSI-EPNVATFILNSEGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFV 79 (203)
T ss_pred eEEEEcCCCCC-HHHHHHHHhcCCCCCccCcE-eecceEEEeecCCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEE
Confidence 68999999999 99999999998876655443 222221 222224457799999999999998888899998 999999
Q ss_pred EeCCCh-hhHHHHHHHHHHHHhh---cCCCCcEEEEeeCCCcccC
Q 028595 84 FSLVSR-ASYENVLKKWIPELQH---YSPGVPVVLVGTKLDLRED 124 (207)
Q Consensus 84 ~d~~~~-~s~~~~~~~~~~~i~~---~~~~~piivv~nK~D~~~~ 124 (207)
+|.++. .++..+...++..+.. ..+++|+++++||+|+...
T Consensus 80 vD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a 124 (203)
T cd04105 80 VDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTA 124 (203)
T ss_pred EECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhccc
Confidence 999998 6777764444444332 2268999999999998654
No 192
>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.78 E-value=1.9e-19 Score=126.27 Aligned_cols=159 Identities=19% Similarity=0.208 Sum_probs=121.0
Q ss_pred eeEEEEecccccceeeeeeeccCCC-------CCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCC
Q 028595 5 AKLACLFATQVTSFLLYVLSVSGRS-------SIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGA 77 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~~~-------~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~ 77 (207)
..|+++|..++| ||||+-+..... ......||+|.... .+.++ ...+.+||.+||+..+++|..||..+
T Consensus 18 y~vlIlgldnAG-KttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig-~i~v~--~~~l~fwdlgGQe~lrSlw~~yY~~~ 93 (197)
T KOG0076|consen 18 YSVLILGLDNAG-KTTFLEALKTDFSKAYGGLNPSKITPTVGLNIG-TIEVC--NAPLSFWDLGGQESLRSLWKKYYWLA 93 (197)
T ss_pred hhheeeccccCC-chhHHHHHHHHHHhhhcCCCHHHeecccceeec-ceeec--cceeEEEEcCChHHHHHHHHHHHHHh
Confidence 468999999999 999998764221 12344566664431 22333 46789999999999999999999999
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHH---HHhC--C
Q 028595 78 DVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELR---KQIG--A 151 (207)
Q Consensus 78 d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~---~~~~--~ 151 (207)
+++|+++|+++++-+++....+...+.... .++|+++.+||.|+.+... ..+..... +..+ -
T Consensus 94 H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~------------~~El~~~~~~~e~~~~rd 161 (197)
T KOG0076|consen 94 HGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAME------------AAELDGVFGLAELIPRRD 161 (197)
T ss_pred ceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhh------------HHHHHHHhhhhhhcCCcc
Confidence 999999999999999998666666665444 6899999999999976543 23333333 3322 1
Q ss_pred cEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 028595 152 SYYIECSSKTQQNVKAVFDAAIKVVIKP 179 (207)
Q Consensus 152 ~~~~e~Sa~~~~~i~~~f~~i~~~~~~~ 179 (207)
.++..+||.+|+||++...|++..+..+
T Consensus 162 ~~~~pvSal~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 162 NPFQPVSALTGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred CccccchhhhcccHHHHHHHHHHHHhhc
Confidence 2688999999999999999999998766
No 193
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.78 E-value=2.4e-18 Score=149.90 Aligned_cols=152 Identities=13% Similarity=0.047 Sum_probs=112.0
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccc----------cc
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLR----------PL 72 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~----------~~ 72 (207)
..+|+++|.+|+| ||||+|++++.+... .+..|.+. .+...++.....+.+|||||...+.... ..
T Consensus 3 ~~~IaLvG~pNvG-KSTLfN~Ltg~~~~v--gn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~ 79 (772)
T PRK09554 3 KLTIGLIGNPNSG-KTTLFNQLTGARQRV--GNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACH 79 (772)
T ss_pred ceEEEEECCCCCC-HHHHHHHHhCCCCcc--CCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHH
Confidence 4689999999999 999999999876422 22233333 2233334455778999999987765321 22
Q ss_pred ee--cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhC
Q 028595 73 SY--RGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG 150 (207)
Q Consensus 73 ~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 150 (207)
++ ..+|++++|+|.++.+.... +..++.+. ++|+++++||+|+.+.+. ...+.+++.+.+|
T Consensus 80 ~l~~~~aD~vI~VvDat~ler~l~----l~~ql~e~--giPvIvVlNK~Dl~~~~~-----------i~id~~~L~~~LG 142 (772)
T PRK09554 80 YILSGDADLLINVVDASNLERNLY----LTLQLLEL--GIPCIVALNMLDIAEKQN-----------IRIDIDALSARLG 142 (772)
T ss_pred HHhccCCCEEEEEecCCcchhhHH----HHHHHHHc--CCCEEEEEEchhhhhccC-----------cHHHHHHHHHHhC
Confidence 33 37999999999998765433 33333332 799999999999875543 3456788889999
Q ss_pred CcEEEEeccCCCCCHHHHHHHHHHHH
Q 028595 151 ASYYIECSSKTQQNVKAVFDAAIKVV 176 (207)
Q Consensus 151 ~~~~~e~Sa~~~~~i~~~f~~i~~~~ 176 (207)
. +++++||.+++|++++.+.+.+..
T Consensus 143 ~-pVvpiSA~~g~GIdeL~~~I~~~~ 167 (772)
T PRK09554 143 C-PVIPLVSTRGRGIEALKLAIDRHQ 167 (772)
T ss_pred C-CEEEEEeecCCCHHHHHHHHHHhh
Confidence 8 999999999999999999988764
No 194
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.78 E-value=1.2e-18 Score=130.35 Aligned_cols=113 Identities=18% Similarity=0.177 Sum_probs=80.4
Q ss_pred EEEEEEeCCCCccccccccceecCCcEEEEEEeCCCh----hhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccc
Q 028595 53 VNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSR----ASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYL 128 (207)
Q Consensus 53 ~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~ 128 (207)
..+.+|||||++.+...+...+.++|++++|+|++++ ++...+ . .+... ...|+++++||+|+.+....
T Consensus 83 ~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l-~----~~~~~-~~~~iiivvNK~Dl~~~~~~- 155 (203)
T cd01888 83 RHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHL-A----ALEIM-GLKHIIIVQNKIDLVKEEQA- 155 (203)
T ss_pred cEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHH-H----HHHHc-CCCcEEEEEEchhccCHHHH-
Confidence 6789999999998877777778889999999999873 233322 2 22221 23579999999999653221
Q ss_pred cCCCCCcccCHHHHHHHHHHh---CCcEEEEeccCCCCCHHHHHHHHHHHHhCCC
Q 028595 129 ADHPGLVPVTTAQGEELRKQI---GASYYIECSSKTQQNVKAVFDAAIKVVIKPP 180 (207)
Q Consensus 129 ~~~~~~~~v~~~~~~~~~~~~---~~~~~~e~Sa~~~~~i~~~f~~i~~~~~~~~ 180 (207)
....++++++++.+ +. +++++||++|+|++++|+.+.+.+..++
T Consensus 156 -------~~~~~~i~~~~~~~~~~~~-~i~~vSA~~g~gi~~L~~~l~~~l~~~~ 202 (203)
T cd01888 156 -------LENYEQIKKFVKGTIAENA-PIIPISAQLKYNIDVLLEYIVKKIPTPP 202 (203)
T ss_pred -------HHHHHHHHHHHhccccCCC-cEEEEeCCCCCCHHHHHHHHHHhCCCCC
Confidence 00224445555443 33 7899999999999999999998876653
No 195
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.78 E-value=2.5e-18 Score=142.70 Aligned_cols=159 Identities=18% Similarity=0.146 Sum_probs=107.3
Q ss_pred ceeEEEEecccccceeeeeeeccCCCC--CccccCceeeeeeeEEEECCeEEEEEEEeCCCCcccccc-----------c
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSS--IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRL-----------R 70 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~-----------~ 70 (207)
.++|+++|.+++| ||||+|++++... ......|..+.....+..++ ..+.+|||||..+.... .
T Consensus 173 ~~~v~ivG~~n~G-KStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~~--~~~~lvDT~G~~~~~~~~~~~e~~~~~~~ 249 (435)
T PRK00093 173 PIKIAIIGRPNVG-KSSLINALLGEERVIVSDIAGTTRDSIDTPFERDG--QKYTLIDTAGIRRKGKVTEGVEKYSVIRT 249 (435)
T ss_pred ceEEEEECCCCCC-HHHHHHHHhCCCceeecCCCCceEEEEEEEEEECC--eeEEEEECCCCCCCcchhhHHHHHHHHHH
Confidence 4799999999999 9999999997652 22333333333333444555 44679999996543222 1
Q ss_pred cceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhC
Q 028595 71 PLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG 150 (207)
Q Consensus 71 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 150 (207)
..++..+|++++|+|+++..+.++. .+...+.. .+.|+++++||+|+.+.... ....++........+
T Consensus 250 ~~~~~~ad~~ilViD~~~~~~~~~~--~i~~~~~~--~~~~~ivv~NK~Dl~~~~~~--------~~~~~~~~~~l~~~~ 317 (435)
T PRK00093 250 LKAIERADVVLLVIDATEGITEQDL--RIAGLALE--AGRALVIVVNKWDLVDEKTM--------EEFKKELRRRLPFLD 317 (435)
T ss_pred HHHHHHCCEEEEEEeCCCCCCHHHH--HHHHHHHH--cCCcEEEEEECccCCCHHHH--------HHHHHHHHHhccccc
Confidence 2357789999999999998777765 44444443 27899999999998643210 001111222222233
Q ss_pred CcEEEEeccCCCCCHHHHHHHHHHHHh
Q 028595 151 ASYYIECSSKTQQNVKAVFDAAIKVVI 177 (207)
Q Consensus 151 ~~~~~e~Sa~~~~~i~~~f~~i~~~~~ 177 (207)
..+++++||++|.|++++|+.+.+...
T Consensus 318 ~~~i~~~SA~~~~gv~~l~~~i~~~~~ 344 (435)
T PRK00093 318 YAPIVFISALTGQGVDKLLEAIDEAYE 344 (435)
T ss_pred CCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 458999999999999999999877554
No 196
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.77 E-value=1.7e-18 Score=146.67 Aligned_cols=161 Identities=15% Similarity=0.063 Sum_probs=103.6
Q ss_pred eEEEEecccccceeeeeeeccCCCCCccc----cCceeeeeeeEEEEC-------------CeEEEEEEEeCCCCccccc
Q 028595 6 KLACLFATQVTSFLLYVLSVSGRSSIWDY----IPTVFDNFSANVVAE-------------GTTVNLGLWDTAGQEDYNR 68 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~~~~~~~~----~~t~~~~~~~~~~~~-------------~~~~~l~i~D~~G~~~~~~ 68 (207)
-|+++|..++| ||||+++|.+..+.... .++++..+...-... .....+.+|||||++.|..
T Consensus 6 iV~IiG~~d~G-KTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~~ 84 (590)
T TIGR00491 6 IVSVLGHVDHG-KTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFTN 84 (590)
T ss_pred EEEEECCCCCC-HHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHHH
Confidence 48999999999 99999999988765432 223333321110001 0112388999999999999
Q ss_pred cccceecCCcEEEEEEeCCC---hhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcc----cCHH-
Q 028595 69 LRPLSYRGADVFVLAFSLVS---RASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVP----VTTA- 140 (207)
Q Consensus 69 ~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~----v~~~- 140 (207)
++..+++.+|++++|+|+++ +++++.+ . .+.. .++|+++++||+|+.+.... ....+.- ...+
T Consensus 85 l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i-~----~l~~--~~vpiIVv~NK~Dl~~~~~~--~~~~~f~e~sak~~~~ 155 (590)
T TIGR00491 85 LRKRGGALADLAILIVDINEGFKPQTQEAL-N----ILRM--YKTPFVVAANKIDRIPGWRS--HEGRPFMESFSKQEIQ 155 (590)
T ss_pred HHHHHHhhCCEEEEEEECCcCCCHhHHHHH-H----HHHH--cCCCEEEEEECCCccchhhh--ccCchHHHHHHhhhHH
Confidence 99999999999999999997 5555544 2 2222 37899999999999642110 0000000 0000
Q ss_pred -----------HHHHHHH------------Hh-CCcEEEEeccCCCCCHHHHHHHHHHHH
Q 028595 141 -----------QGEELRK------------QI-GASYYIECSSKTQQNVKAVFDAAIKVV 176 (207)
Q Consensus 141 -----------~~~~~~~------------~~-~~~~~~e~Sa~~~~~i~~~f~~i~~~~ 176 (207)
....+.+ .+ +..+++++||++|+|+++++.++....
T Consensus 156 v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~ 215 (590)
T TIGR00491 156 VQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLA 215 (590)
T ss_pred HHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHH
Confidence 0011111 11 234899999999999999999886543
No 197
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.77 E-value=6e-19 Score=122.57 Aligned_cols=138 Identities=18% Similarity=0.165 Sum_probs=105.7
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCcc----ccccccceecCCcE
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED----YNRLRPLSYRGADV 79 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~----~~~~~~~~~~~~d~ 79 (207)
+.||+++|..++| ||||+++|.+... .|..|+...| .=.++||||.-. +....-....+||.
T Consensus 1 MkrimliG~~g~G-KTTL~q~L~~~~~--~~~KTq~i~~-----------~~~~IDTPGEyiE~~~~y~aLi~ta~dad~ 66 (143)
T PF10662_consen 1 MKRIMLIGPSGSG-KTTLAQALNGEEI--RYKKTQAIEY-----------YDNTIDTPGEYIENPRFYHALIVTAQDADV 66 (143)
T ss_pred CceEEEECCCCCC-HHHHHHHHcCCCC--CcCccceeEe-----------cccEEECChhheeCHHHHHHHHHHHhhCCE
Confidence 4689999999999 9999999988753 4445543222 124599999532 22223334568999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEecc
Q 028595 80 FVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSS 159 (207)
Q Consensus 80 ~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa 159 (207)
+++|.|.+++.+.-. ..+...+ +.|++-|.||+|+..+.. ..+.++++.+.-|..+.|++|+
T Consensus 67 V~ll~dat~~~~~~p--P~fa~~f-----~~pvIGVITK~Dl~~~~~-----------~i~~a~~~L~~aG~~~if~vS~ 128 (143)
T PF10662_consen 67 VLLLQDATEPRSVFP--PGFASMF-----NKPVIGVITKIDLPSDDA-----------NIERAKKWLKNAGVKEIFEVSA 128 (143)
T ss_pred EEEEecCCCCCccCC--chhhccc-----CCCEEEEEECccCccchh-----------hHHHHHHHHHHcCCCCeEEEEC
Confidence 999999999766554 3455454 689999999999985443 7788999999999988999999
Q ss_pred CCCCCHHHHHHHHH
Q 028595 160 KTQQNVKAVFDAAI 173 (207)
Q Consensus 160 ~~~~~i~~~f~~i~ 173 (207)
.+|+|++++.+.|-
T Consensus 129 ~~~eGi~eL~~~L~ 142 (143)
T PF10662_consen 129 VTGEGIEELKDYLE 142 (143)
T ss_pred CCCcCHHHHHHHHh
Confidence 99999999998873
No 198
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.77 E-value=1.1e-17 Score=127.54 Aligned_cols=150 Identities=16% Similarity=0.123 Sum_probs=101.0
Q ss_pred eeEEEEecccccceeeeeeeccCCCCC-ccccCceeeeeeeEEEECCeEEEEEEEeCCCCcccc----c---cccceecC
Q 028595 5 AKLACLFATQVTSFLLYVLSVSGRSSI-WDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYN----R---LRPLSYRG 76 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~----~---~~~~~~~~ 76 (207)
.+|+++|.+++| ||||+++|++.... ..+..|..+.....+..++ ..+++||+||..... . ....++++
T Consensus 1 ~~v~lvG~~~~G-KStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~~--~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ 77 (233)
T cd01896 1 ARVALVGFPSVG-KSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYKG--AKIQLLDLPGIIEGAADGKGRGRQVIAVART 77 (233)
T ss_pred CEEEEECCCCCC-HHHHHHHHHCCCccccCCCCccccceEEEEEECC--eEEEEEECCCcccccccchhHHHHHHHhhcc
Confidence 379999999999 99999999987632 2333332222233444555 578899999975432 1 12346889
Q ss_pred CcEEEEEEeCCChhh-HHHHHHHHHH--------------------------------------------HH--------
Q 028595 77 ADVFVLAFSLVSRAS-YENVLKKWIP--------------------------------------------EL-------- 103 (207)
Q Consensus 77 ~d~~i~v~d~~~~~s-~~~~~~~~~~--------------------------------------------~i-------- 103 (207)
+|++++|+|+++++. ...+ ...+. .+
T Consensus 78 ad~il~V~D~t~~~~~~~~~-~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~~~v~ 156 (233)
T cd01896 78 ADLILMVLDATKPEGHREIL-ERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVL 156 (233)
T ss_pred CCEEEEEecCCcchhHHHHH-HHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeeeEEEE
Confidence 999999999988653 2222 12221 11
Q ss_pred --------------hhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCCCCCHHHHH
Q 028595 104 --------------QHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 169 (207)
Q Consensus 104 --------------~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f 169 (207)
.....-+|+++|+||+|+. ..++++.+++.. +++++||+++.|++++|
T Consensus 157 ~~~~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~---------------~~~~~~~~~~~~---~~~~~SA~~g~gi~~l~ 218 (233)
T cd01896 157 IREDITVDDLIDVIEGNRVYIPCLYVYNKIDLI---------------SIEELDLLARQP---NSVVISAEKGLNLDELK 218 (233)
T ss_pred EccCCCHHHHHHHHhCCceEeeEEEEEECccCC---------------CHHHHHHHhcCC---CEEEEcCCCCCCHHHHH
Confidence 1111236999999999984 334444555432 68999999999999999
Q ss_pred HHHHHHH
Q 028595 170 DAAIKVV 176 (207)
Q Consensus 170 ~~i~~~~ 176 (207)
+.+.+.+
T Consensus 219 ~~i~~~L 225 (233)
T cd01896 219 ERIWDKL 225 (233)
T ss_pred HHHHHHh
Confidence 9998765
No 199
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.76 E-value=3.3e-18 Score=122.11 Aligned_cols=150 Identities=21% Similarity=0.130 Sum_probs=102.7
Q ss_pred EEecccccceeeeeeeccCCCCC-cc-ccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccc-------cceecCCcE
Q 028595 9 CLFATQVTSFLLYVLSVSGRSSI-WD-YIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLR-------PLSYRGADV 79 (207)
Q Consensus 9 iiG~~~~GgKssli~~l~~~~~~-~~-~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~-------~~~~~~~d~ 79 (207)
++|..++| ||||++++++.... .. ..++...........+. ...+.+||+||........ ..++..+|+
T Consensus 1 i~G~~gsG-Kstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~ 78 (163)
T cd00880 1 LFGRTNAG-KSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGP-LGPVVLIDTPGIDEAGGLGREREELARRVLERADL 78 (163)
T ss_pred CcCCCCCC-HHHHHHHHhCccccccCCCCCcEECCeEEEEEecC-CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCE
Confidence 58999999 99999999977543 22 22222222232333221 4678999999987665433 347789999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHH---HHHHHHHHhCCcEEEE
Q 028595 80 FVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTA---QGEELRKQIGASYYIE 156 (207)
Q Consensus 80 ~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~---~~~~~~~~~~~~~~~e 156 (207)
+++|+|.++..+.... . +...... .+.|+++++||.|+...... ... .........+ .++++
T Consensus 79 il~v~~~~~~~~~~~~-~-~~~~~~~--~~~~~ivv~nK~D~~~~~~~----------~~~~~~~~~~~~~~~~-~~~~~ 143 (163)
T cd00880 79 ILFVVDADLRADEEEE-K-LLELLRE--RGKPVLLVLNKIDLLPEEEE----------EELLELRLLILLLLLG-LPVIA 143 (163)
T ss_pred EEEEEeCCCCCCHHHH-H-HHHHHHh--cCCeEEEEEEccccCChhhH----------HHHHHHHHhhcccccC-CceEE
Confidence 9999999998888776 2 3333332 48999999999998765431 111 1122222223 48999
Q ss_pred eccCCCCCHHHHHHHHHHH
Q 028595 157 CSSKTQQNVKAVFDAAIKV 175 (207)
Q Consensus 157 ~Sa~~~~~i~~~f~~i~~~ 175 (207)
+||.++.|++++++++.+.
T Consensus 144 ~sa~~~~~v~~l~~~l~~~ 162 (163)
T cd00880 144 VSALTGEGIDELREALIEA 162 (163)
T ss_pred EeeeccCCHHHHHHHHHhh
Confidence 9999999999999999875
No 200
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.76 E-value=1.1e-17 Score=118.92 Aligned_cols=153 Identities=18% Similarity=0.207 Sum_probs=117.1
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCCc--------cccC----ceeeeeeeEEEECCeEEEEEEEeCCCCcccccccc
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSIW--------DYIP----TVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRP 71 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~--------~~~~----t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~ 71 (207)
..||+++|..++| |||++.+++...... ++.. |+.-+|-. ..++ ....+.++|||||++++.+|.
T Consensus 10 ~~KIvv~G~~~ag-KtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~-~~~~-~~~~v~LfgtPGq~RF~fm~~ 86 (187)
T COG2229 10 ETKIVVIGPVGAG-KTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGS-IELD-EDTGVHLFGTPGQERFKFMWE 86 (187)
T ss_pred ceeEEEEcccccc-hhhHHHHhhccccceeeccccccccccccceeEeecccc-eEEc-CcceEEEecCCCcHHHHHHHH
Confidence 4699999999999 999999998776421 1111 11222211 1122 235688999999999999999
Q ss_pred ceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHh--
Q 028595 72 LSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI-- 149 (207)
Q Consensus 72 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-- 149 (207)
.+++++.+.|++.|.+.+..+ +. ...++.+....+ +|++|+.||.|+.+.. ..++.+++....
T Consensus 87 ~l~~ga~gaivlVDss~~~~~-~a-~~ii~f~~~~~~-ip~vVa~NK~DL~~a~------------ppe~i~e~l~~~~~ 151 (187)
T COG2229 87 ILSRGAVGAIVLVDSSRPITF-HA-EEIIDFLTSRNP-IPVVVAINKQDLFDAL------------PPEKIREALKLELL 151 (187)
T ss_pred HHhCCcceEEEEEecCCCcch-HH-HHHHHHHhhccC-CCEEEEeeccccCCCC------------CHHHHHHHHHhccC
Confidence 999999999999999999988 44 466666665433 9999999999998776 455655555554
Q ss_pred CCcEEEEeccCCCCCHHHHHHHHHHH
Q 028595 150 GASYYIECSSKTQQNVKAVFDAAIKV 175 (207)
Q Consensus 150 ~~~~~~e~Sa~~~~~i~~~f~~i~~~ 175 (207)
.. +.++.+|.++++..+.+..+...
T Consensus 152 ~~-~vi~~~a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 152 SV-PVIEIDATEGEGARDQLDVLLLK 176 (187)
T ss_pred CC-ceeeeecccchhHHHHHHHHHhh
Confidence 44 89999999999999999998877
No 201
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.74 E-value=3.8e-18 Score=126.30 Aligned_cols=160 Identities=19% Similarity=0.221 Sum_probs=107.6
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCCccc-------------cC---ceeeee-eeEEEEC--CeEEEEEEEeCCCCc
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDY-------------IP---TVFDNF-SANVVAE--GTTVNLGLWDTAGQE 64 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~-------------~~---t~~~~~-~~~~~~~--~~~~~l~i~D~~G~~ 64 (207)
..+|+++|..++| ||||+.+|+...-.... .+ ..+.+. ....... .....+.++|+||+.
T Consensus 3 ~~~I~i~G~~~sG-KTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~ 81 (188)
T PF00009_consen 3 IRNIAIIGHVDSG-KTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE 81 (188)
T ss_dssp EEEEEEEESTTSS-HHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH
T ss_pred EEEEEEECCCCCC-cEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc
Confidence 4689999999999 99999999844311000 00 001111 1122222 445789999999999
Q ss_pred cccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHH-
Q 028595 65 DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGE- 143 (207)
Q Consensus 65 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~- 143 (207)
.|.......+..+|++|+|.|+.+....+.. .++..+... ++|++++.||+|+...+-. ...++..
T Consensus 82 ~f~~~~~~~~~~~D~ailvVda~~g~~~~~~--~~l~~~~~~--~~p~ivvlNK~D~~~~~~~---------~~~~~~~~ 148 (188)
T PF00009_consen 82 DFIKEMIRGLRQADIAILVVDANDGIQPQTE--EHLKILREL--GIPIIVVLNKMDLIEKELE---------EIIEEIKE 148 (188)
T ss_dssp HHHHHHHHHHTTSSEEEEEEETTTBSTHHHH--HHHHHHHHT--T-SEEEEEETCTSSHHHHH---------HHHHHHHH
T ss_pred ceeecccceecccccceeeeecccccccccc--ccccccccc--ccceEEeeeeccchhhhHH---------HHHHHHHH
Confidence 9877777778899999999999976554443 444444443 7899999999999733210 0122222
Q ss_pred HHHHHhC-----CcEEEEeccCCCCCHHHHHHHHHHHHh
Q 028595 144 ELRKQIG-----ASYYIECSSKTQQNVKAVFDAAIKVVI 177 (207)
Q Consensus 144 ~~~~~~~-----~~~~~e~Sa~~~~~i~~~f~~i~~~~~ 177 (207)
.+.+.++ ..+++.+||.+|.|++++++.+.+.++
T Consensus 149 ~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 149 KLLKEYGENGEEIVPVIPISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp HHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS-
T ss_pred HhccccccCccccceEEEEecCCCCCHHHHHHHHHHhCc
Confidence 4444443 247999999999999999999988764
No 202
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.74 E-value=1e-17 Score=120.95 Aligned_cols=154 Identities=15% Similarity=0.033 Sum_probs=100.0
Q ss_pred eEEEEecccccceeeeeeeccCCCCCccccCceeeeeee-EEEECCeEEEEEEEeCCCCcc----------cccccccee
Q 028595 6 KLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSA-NVVAEGTTVNLGLWDTAGQED----------YNRLRPLSY 74 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~l~i~D~~G~~~----------~~~~~~~~~ 74 (207)
.|+++|..++| ||||+++++++.+...+.++.+.+... .+..++ .+.+|||||... +......|+
T Consensus 1 ~i~l~G~~g~G-KTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~ 76 (170)
T cd01876 1 EIAFAGRSNVG-KSSLINALTNRKKLARTSKTPGKTQLINFFNVND---KFRLVDLPGYGYAKVSKEVKEKWGKLIEEYL 76 (170)
T ss_pred CEEEEcCCCCC-HHHHHHHHhcCCceeeecCCCCcceeEEEEEccC---eEEEecCCCccccccCHHHHHHHHHHHHHHH
Confidence 48999999999 999999999776666666665544332 222232 788999999433 233334444
Q ss_pred c---CCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHH-HhC
Q 028595 75 R---GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRK-QIG 150 (207)
Q Consensus 75 ~---~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~ 150 (207)
. +.+++++++|.++..+.... .....+... +.|+++++||+|+...... ...........+ ...
T Consensus 77 ~~~~~~~~~~~v~d~~~~~~~~~~--~~~~~l~~~--~~~vi~v~nK~D~~~~~~~--------~~~~~~~~~~l~~~~~ 144 (170)
T cd01876 77 ENRENLKGVVLLIDSRHGPTEIDL--EMLDWLEEL--GIPFLVVLTKADKLKKSEL--------AKALKEIKKELKLFEI 144 (170)
T ss_pred HhChhhhEEEEEEEcCcCCCHhHH--HHHHHHHHc--CCCEEEEEEchhcCChHHH--------HHHHHHHHHHHHhccC
Confidence 4 35788999998876332221 222233322 6899999999998543221 002222333333 233
Q ss_pred CcEEEEeccCCCCCHHHHHHHHHHH
Q 028595 151 ASYYIECSSKTQQNVKAVFDAAIKV 175 (207)
Q Consensus 151 ~~~~~e~Sa~~~~~i~~~f~~i~~~ 175 (207)
..+++++||+++.++.++++++.+.
T Consensus 145 ~~~~~~~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 145 DPPIILFSSLKGQGIDELRALIEKW 169 (170)
T ss_pred CCceEEEecCCCCCHHHHHHHHHHh
Confidence 3488999999999999999999765
No 203
>PRK10218 GTP-binding protein; Provisional
Probab=99.73 E-value=3.8e-17 Score=139.02 Aligned_cols=164 Identities=13% Similarity=0.025 Sum_probs=116.0
Q ss_pred ccceeEEEEecccccceeeeeeeccC--CCCCccc------------cCceeeee-eeEEEECCeEEEEEEEeCCCCccc
Q 028595 2 ELLAKLACLFATQVTSFLLYVLSVSG--RSSIWDY------------IPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDY 66 (207)
Q Consensus 2 ~~~~ki~iiG~~~~GgKssli~~l~~--~~~~~~~------------~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~ 66 (207)
+...+|+++|..++| ||||+++|+. +.+...+ ..+.+.++ .....+....+.+++|||||+.+|
T Consensus 3 ~~iRnIaIiGh~d~G-KTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~df 81 (607)
T PRK10218 3 EKLRNIAIIAHVDHG-KTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADF 81 (607)
T ss_pred CCceEEEEECCCCCc-HHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcchh
Confidence 345799999999999 9999999986 3332211 12233333 334455556789999999999999
Q ss_pred cccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHH
Q 028595 67 NRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELR 146 (207)
Q Consensus 67 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~ 146 (207)
...+..+++.+|++++|+|+++....+.. .++..+.. .++|.+++.||+|+...+.. ...++...+.
T Consensus 82 ~~~v~~~l~~aDg~ILVVDa~~G~~~qt~--~~l~~a~~--~gip~IVviNKiD~~~a~~~---------~vl~ei~~l~ 148 (607)
T PRK10218 82 GGEVERVMSMVDSVLLVVDAFDGPMPQTR--FVTKKAFA--YGLKPIVVINKVDRPGARPD---------WVVDQVFDLF 148 (607)
T ss_pred HHHHHHHHHhCCEEEEEEecccCccHHHH--HHHHHHHH--cCCCEEEEEECcCCCCCchh---------HHHHHHHHHH
Confidence 99999999999999999999885444332 23333333 37899999999998754321 0223444443
Q ss_pred HH-------hCCcEEEEeccCCCC----------CHHHHHHHHHHHHhCCC
Q 028595 147 KQ-------IGASYYIECSSKTQQ----------NVKAVFDAAIKVVIKPP 180 (207)
Q Consensus 147 ~~-------~~~~~~~e~Sa~~~~----------~i~~~f~~i~~~~~~~~ 180 (207)
.. ..+ |++.+||.+|. ++..+|+.++..+..+.
T Consensus 149 ~~l~~~~~~~~~-PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P~ 198 (607)
T PRK10218 149 VNLDATDEQLDF-PIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAPD 198 (607)
T ss_pred hccCccccccCC-CEEEeEhhcCcccCCccccccchHHHHHHHHHhCCCCC
Confidence 22 223 78999999998 58999999999887664
No 204
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.72 E-value=2.2e-16 Score=127.04 Aligned_cols=163 Identities=18% Similarity=0.160 Sum_probs=120.1
Q ss_pred ceeEEEEecccccceeeeeeeccCCCC--CccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccc-----------
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSS--IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLR----------- 70 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~----------- 70 (207)
.+||+++|.||+| ||||+|++++..- ......|+.+.....+..+++. +.++||+|-.+-....
T Consensus 178 ~ikiaiiGrPNvG-KSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~--~~liDTAGiRrk~ki~e~~E~~Sv~rt 254 (444)
T COG1160 178 PIKIAIIGRPNVG-KSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRK--YVLIDTAGIRRKGKITESVEKYSVART 254 (444)
T ss_pred ceEEEEEeCCCCC-chHHHHHhccCceEEecCCCCccccceeeeEEECCeE--EEEEECCCCCcccccccceEEEeehhh
Confidence 5899999999999 9999999998863 3444455555556677777765 4699999954322211
Q ss_pred cceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhC
Q 028595 71 PLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG 150 (207)
Q Consensus 71 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 150 (207)
...+..+|++++|.|.+.+-+-++. .....+.+. +.+++++.||+|+.+.++. ......++........+
T Consensus 255 ~~aI~~a~vvllviDa~~~~~~qD~--~ia~~i~~~--g~~~vIvvNKWDl~~~~~~------~~~~~k~~i~~~l~~l~ 324 (444)
T COG1160 255 LKAIERADVVLLVIDATEGISEQDL--RIAGLIEEA--GRGIVIVVNKWDLVEEDEA------TMEEFKKKLRRKLPFLD 324 (444)
T ss_pred HhHHhhcCEEEEEEECCCCchHHHH--HHHHHHHHc--CCCeEEEEEccccCCchhh------HHHHHHHHHHHHhcccc
Confidence 2345679999999999999888885 667777664 8999999999998775322 00012234444555567
Q ss_pred CcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 028595 151 ASYYIECSSKTQQNVKAVFDAAIKVVIKP 179 (207)
Q Consensus 151 ~~~~~e~Sa~~~~~i~~~f~~i~~~~~~~ 179 (207)
+.+.+.+||+++.++.++|+.+.......
T Consensus 325 ~a~i~~iSA~~~~~i~~l~~~i~~~~~~~ 353 (444)
T COG1160 325 FAPIVFISALTGQGLDKLFEAIKEIYECA 353 (444)
T ss_pred CCeEEEEEecCCCChHHHHHHHHHHHHHh
Confidence 77999999999999999999998777543
No 205
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.72 E-value=4.4e-17 Score=139.26 Aligned_cols=155 Identities=15% Similarity=0.122 Sum_probs=103.8
Q ss_pred eEEEEecccccceeeeeeeccCCC---CCccc--cCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEE
Q 028595 6 KLACLFATQVTSFLLYVLSVSGRS---SIWDY--IPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF 80 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~~~---~~~~~--~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ 80 (207)
-|+++|..++| ||||+++|++.. +.++. -.|+...|......++ ..+.+|||||+++|.......+.++|++
T Consensus 2 ii~~~GhvdhG-KTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g--~~i~~IDtPGhe~fi~~m~~g~~~~D~~ 78 (614)
T PRK10512 2 IIATAGHVDHG-KTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDG--RVLGFIDVPGHEKFLSNMLAGVGGIDHA 78 (614)
T ss_pred EEEEECCCCCC-HHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCC--cEEEEEECCCHHHHHHHHHHHhhcCCEE
Confidence 37899999999 999999998643 22232 2222222211111133 3478999999999866555667889999
Q ss_pred EEEEeCCC---hhhHHHHHHHHHHHHhhcCCCCc-EEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCC--cEE
Q 028595 81 VLAFSLVS---RASYENVLKKWIPELQHYSPGVP-VVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA--SYY 154 (207)
Q Consensus 81 i~v~d~~~---~~s~~~~~~~~~~~i~~~~~~~p-iivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~~ 154 (207)
++|+|+++ +++.+.+ ..+... ++| +++|+||+|+.+.... ....+++++++...++ .++
T Consensus 79 lLVVda~eg~~~qT~ehl-----~il~~l--gi~~iIVVlNKiDlv~~~~~--------~~v~~ei~~~l~~~~~~~~~i 143 (614)
T PRK10512 79 LLVVACDDGVMAQTREHL-----AILQLT--GNPMLTVALTKADRVDEARI--------AEVRRQVKAVLREYGFAEAKL 143 (614)
T ss_pred EEEEECCCCCcHHHHHHH-----HHHHHc--CCCeEEEEEECCccCCHHHH--------HHHHHHHHHHHHhcCCCCCcE
Confidence 99999987 4444443 222222 455 5799999999653221 0023455666665553 489
Q ss_pred EEeccCCCCCHHHHHHHHHHHHhC
Q 028595 155 IECSSKTQQNVKAVFDAAIKVVIK 178 (207)
Q Consensus 155 ~e~Sa~~~~~i~~~f~~i~~~~~~ 178 (207)
+++||++|.|++++++.|......
T Consensus 144 i~VSA~tG~gI~~L~~~L~~~~~~ 167 (614)
T PRK10512 144 FVTAATEGRGIDALREHLLQLPER 167 (614)
T ss_pred EEEeCCCCCCCHHHHHHHHHhhcc
Confidence 999999999999999999875543
No 206
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.72 E-value=4.1e-18 Score=139.56 Aligned_cols=165 Identities=21% Similarity=0.275 Sum_probs=127.5
Q ss_pred cceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEE
Q 028595 3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 82 (207)
Q Consensus 3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~ 82 (207)
.-.+|+++|+.++| |||||-++....|.+.. |...++......+....+...|.|++..+..+.....-++.||++.+
T Consensus 8 kdVRIvliGD~G~G-KtSLImSL~~eef~~~V-P~rl~~i~IPadvtPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi~l 85 (625)
T KOG1707|consen 8 KDVRIVLIGDEGVG-KTSLIMSLLEEEFVDAV-PRRLPRILIPADVTPENVPTSIVDTSSDSDDRLCLRKEIRKADVICL 85 (625)
T ss_pred cceEEEEECCCCcc-HHHHHHHHHhhhccccc-cccCCccccCCccCcCcCceEEEecccccchhHHHHHHHhhcCEEEE
Confidence 35789999999999 99999999999887553 33334444444444445668999998766655555667889999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhcC---CCCcEEEEeeCCCcccCcccccCCCCCcccCHH-HHHHHHHHhC-CcEEEEe
Q 028595 83 AFSLVSRASYENVLKKWIPELQHYS---PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTA-QGEELRKQIG-ASYYIEC 157 (207)
Q Consensus 83 v~d~~~~~s~~~~~~~~~~~i~~~~---~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~~-~~~~~e~ 157 (207)
+|+++++++++.+..+|++++++.. .++|+|+||||.|......- +.+ ....+-..+. +..+++|
T Consensus 86 vyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~----------s~e~~~~pim~~f~EiEtciec 155 (625)
T KOG1707|consen 86 VYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENN----------SDEVNTLPIMIAFAEIETCIEC 155 (625)
T ss_pred EEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCcccccc----------chhHHHHHHHHHhHHHHHHHhh
Confidence 9999999999999999999999887 68999999999998765431 222 2333333332 2246899
Q ss_pred ccCCCCCHHHHHHHHHHHHhCC
Q 028595 158 SSKTQQNVKAVFDAAIKVVIKP 179 (207)
Q Consensus 158 Sa~~~~~i~~~f~~i~~~~~~~ 179 (207)
||++..++.++|...-++++.+
T Consensus 156 SA~~~~n~~e~fYyaqKaVihP 177 (625)
T KOG1707|consen 156 SALTLANVSELFYYAQKAVIHP 177 (625)
T ss_pred hhhhhhhhHhhhhhhhheeecc
Confidence 9999999999999998888754
No 207
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.71 E-value=1.8e-17 Score=137.12 Aligned_cols=157 Identities=13% Similarity=-0.036 Sum_probs=101.5
Q ss_pred ceeEEEEecccccceeeeeeeccC--CCCCccc-----------------------------cCceeeeeeeEEEECCeE
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSG--RSSIWDY-----------------------------IPTVFDNFSANVVAEGTT 52 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~--~~~~~~~-----------------------------~~t~~~~~~~~~~~~~~~ 52 (207)
..+|+++|..++| ||||+.+|+. +.+.... ...++.+.. ...+....
T Consensus 7 ~~~v~i~Ghvd~G-KSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~-~~~~~~~~ 84 (426)
T TIGR00483 7 HINVAFIGHVDHG-KSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVA-HWKFETDK 84 (426)
T ss_pred eeEEEEEeccCCc-HHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEE-EEEEccCC
Confidence 4689999999999 9999999985 2222100 011111111 12233345
Q ss_pred EEEEEEeCCCCccccccccceecCCcEEEEEEeCCChhhHHHH-HHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCC
Q 028595 53 VNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV-LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADH 131 (207)
Q Consensus 53 ~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~ 131 (207)
+.+.+|||||++.|.......+..+|++++|+|+++.++.... ...++..... ....|+++++||+|+.+....
T Consensus 85 ~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~-~~~~~iIVviNK~Dl~~~~~~---- 159 (426)
T TIGR00483 85 YEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLART-LGINQLIVAINKMDSVNYDEE---- 159 (426)
T ss_pred eEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHH-cCCCeEEEEEEChhccCccHH----
Confidence 7899999999998866555667889999999999987543211 0111222222 224679999999999642210
Q ss_pred CCCcccCHHHHHHHHHHhCC----cEEEEeccCCCCCHHHHH
Q 028595 132 PGLVPVTTAQGEELRKQIGA----SYYIECSSKTQQNVKAVF 169 (207)
Q Consensus 132 ~~~~~v~~~~~~~~~~~~~~----~~~~e~Sa~~~~~i~~~f 169 (207)
......++++.+++..++ .+++++||++|.|+.+++
T Consensus 160 --~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~~~ 199 (426)
T TIGR00483 160 --EFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIKKS 199 (426)
T ss_pred --HHHHHHHHHHHHHHHcCCCcccceEEEeeccccccccccc
Confidence 000134567778887763 379999999999998743
No 208
>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.71 E-value=1.2e-17 Score=116.39 Aligned_cols=156 Identities=15% Similarity=0.170 Sum_probs=118.9
Q ss_pred cceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEE
Q 028595 3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 82 (207)
Q Consensus 3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~ 82 (207)
+..|++++|-+|+| ||||++++.+.+. ..+.||...+ +..+.+.| ++++.+|.+|+..-+..|+.|+..+|++++
T Consensus 19 K~gKllFlGLDNAG-KTTLLHMLKdDrl-~qhvPTlHPT-SE~l~Ig~--m~ftt~DLGGH~qArr~wkdyf~~v~~iv~ 93 (193)
T KOG0077|consen 19 KFGKLLFLGLDNAG-KTTLLHMLKDDRL-GQHVPTLHPT-SEELSIGG--MTFTTFDLGGHLQARRVWKDYFPQVDAIVY 93 (193)
T ss_pred cCceEEEEeecCCc-hhhHHHHHccccc-cccCCCcCCC-hHHheecC--ceEEEEccccHHHHHHHHHHHHhhhceeEe
Confidence 46799999999999 9999999998884 4566776543 34455565 778899999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHH------HHHHHhC-----
Q 028595 83 AFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGE------ELRKQIG----- 150 (207)
Q Consensus 83 v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~------~~~~~~~----- 150 (207)
.+|+-+.+.+.+....+...+.... ..+|+++.+||+|.+..- ..++.+ .++-..+
T Consensus 94 lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~------------se~~l~~~l~l~~~t~~~~~v~~~ 161 (193)
T KOG0077|consen 94 LVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAA------------SEDELRFHLGLSNFTTGKGKVNLT 161 (193)
T ss_pred eeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcc------------cHHHHHHHHHHHHHhccccccccc
Confidence 9999999999998666655554433 689999999999987653 222221 1221111
Q ss_pred ---C--cEEEEeccCCCCCHHHHHHHHHHH
Q 028595 151 ---A--SYYIECSSKTQQNVKAVFDAAIKV 175 (207)
Q Consensus 151 ---~--~~~~e~Sa~~~~~i~~~f~~i~~~ 175 (207)
. ...+.||...+.+.-+.|.|+...
T Consensus 162 ~~~~rp~evfmcsi~~~~gy~e~fkwl~qy 191 (193)
T KOG0077|consen 162 DSNVRPLEVFMCSIVRKMGYGEGFKWLSQY 191 (193)
T ss_pred CCCCCeEEEEEEEEEccCccceeeeehhhh
Confidence 1 245678998888888888887654
No 209
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.71 E-value=1.1e-16 Score=129.15 Aligned_cols=152 Identities=20% Similarity=0.203 Sum_probs=113.1
Q ss_pred ceeEEEEecccccceeeeeeeccCCCC--CccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccc--------cce
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSS--IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLR--------PLS 73 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~--------~~~ 73 (207)
-+|++++|.||+| ||||+|.|++..- ..+...|+.+.....+.++| +.+.+.||+|-....... ...
T Consensus 217 G~kvvIiG~PNvG-KSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~G--~pv~l~DTAGiRet~d~VE~iGIeRs~~~ 293 (454)
T COG0486 217 GLKVVIIGRPNVG-KSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLNG--IPVRLVDTAGIRETDDVVERIGIERAKKA 293 (454)
T ss_pred CceEEEECCCCCc-HHHHHHHHhcCCceEecCCCCCccceEEEEEEECC--EEEEEEecCCcccCccHHHHHHHHHHHHH
Confidence 4699999999999 9999999998863 45556666666677888898 778899999965443332 345
Q ss_pred ecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcE
Q 028595 74 YRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASY 153 (207)
Q Consensus 74 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 153 (207)
++.||.+++|+|.+.+.+-.+. ..+. ...++.|+++|.||.|+...... ... +..+..+
T Consensus 294 i~~ADlvL~v~D~~~~~~~~d~--~~~~---~~~~~~~~i~v~NK~DL~~~~~~---------------~~~-~~~~~~~ 352 (454)
T COG0486 294 IEEADLVLFVLDASQPLDKEDL--ALIE---LLPKKKPIIVVLNKADLVSKIEL---------------ESE-KLANGDA 352 (454)
T ss_pred HHhCCEEEEEEeCCCCCchhhH--HHHH---hcccCCCEEEEEechhccccccc---------------chh-hccCCCc
Confidence 7789999999999997444443 2222 22257999999999999765431 111 1122226
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHhCC
Q 028595 154 YIECSSKTQQNVKAVFDAAIKVVIKP 179 (207)
Q Consensus 154 ~~e~Sa~~~~~i~~~f~~i~~~~~~~ 179 (207)
++.+|+++++|++.+.+.|.+.+...
T Consensus 353 ~i~iSa~t~~Gl~~L~~~i~~~~~~~ 378 (454)
T COG0486 353 IISISAKTGEGLDALREAIKQLFGKG 378 (454)
T ss_pred eEEEEecCccCHHHHHHHHHHHHhhc
Confidence 89999999999999999998888665
No 210
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.70 E-value=1.3e-16 Score=135.67 Aligned_cols=161 Identities=14% Similarity=0.100 Sum_probs=101.8
Q ss_pred eeEEEEecccccceeeeeeeccCCCCCcccc----CceeeeeeeEEEE---CCeEE----------EEEEEeCCCCcccc
Q 028595 5 AKLACLFATQVTSFLLYVLSVSGRSSIWDYI----PTVFDNFSANVVA---EGTTV----------NLGLWDTAGQEDYN 67 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~~~~~~~~~----~t~~~~~~~~~~~---~~~~~----------~l~i~D~~G~~~~~ 67 (207)
.-|+++|..++| ||||+++|.+........ +++|..+...-.. .+..+ .+.+|||||++.|.
T Consensus 7 p~V~i~Gh~~~G-KTSLl~~l~~~~v~~~~~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e~f~ 85 (586)
T PRK04004 7 PIVVVLGHVDHG-KTTLLDKIRGTAVAAKEAGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHEAFT 85 (586)
T ss_pred cEEEEECCCCCC-HHHHHHHHhCcccccCCCCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChHHHH
Confidence 358899999999 999999998765443322 2333332111100 11111 16899999999999
Q ss_pred ccccceecCCcEEEEEEeCCC---hhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcc--c--C--
Q 028595 68 RLRPLSYRGADVFVLAFSLVS---RASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVP--V--T-- 138 (207)
Q Consensus 68 ~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~--v--~-- 138 (207)
.++...+..+|++++|+|+++ +++++.+ . + +.. .++|+++++||+|+.+.... ....+.. + .
T Consensus 86 ~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i-~-~---~~~--~~vpiIvviNK~D~~~~~~~--~~~~~~~e~~~~~~~ 156 (586)
T PRK04004 86 NLRKRGGALADIAILVVDINEGFQPQTIEAI-N-I---LKR--RKTPFVVAANKIDRIPGWKS--TEDAPFLESIEKQSQ 156 (586)
T ss_pred HHHHHhHhhCCEEEEEEECCCCCCHhHHHHH-H-H---HHH--cCCCEEEEEECcCCchhhhh--hcCchHHHHHhhhhH
Confidence 888888899999999999997 6666655 2 2 222 37999999999998532110 0000000 0 0
Q ss_pred --H-------HHHHHHHHHh--------------CCcEEEEeccCCCCCHHHHHHHHHHH
Q 028595 139 --T-------AQGEELRKQI--------------GASYYIECSSKTQQNVKAVFDAAIKV 175 (207)
Q Consensus 139 --~-------~~~~~~~~~~--------------~~~~~~e~Sa~~~~~i~~~f~~i~~~ 175 (207)
. .+...+.... +..+++++||++|+|+++++..+...
T Consensus 157 ~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~ 216 (586)
T PRK04004 157 RVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGL 216 (586)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHH
Confidence 0 0011111222 22478999999999999999887643
No 211
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.70 E-value=6.4e-17 Score=137.69 Aligned_cols=161 Identities=13% Similarity=0.080 Sum_probs=112.6
Q ss_pred eeEEEEecccccceeeeeeeccCC--CCCcccc------------Cceeeee-eeEEEECCeEEEEEEEeCCCCcccccc
Q 028595 5 AKLACLFATQVTSFLLYVLSVSGR--SSIWDYI------------PTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRL 69 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~~--~~~~~~~------------~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~ 69 (207)
.+|+++|..++| ||||+.+|+.. .+..... ..-|.+. .....+....+.+++|||||+++|...
T Consensus 2 RNIaIiGHvd~G-KTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~DF~~e 80 (594)
T TIGR01394 2 RNIAIIAHVDHG-KTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHADFGGE 80 (594)
T ss_pred cEEEEEcCCCCC-HHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHHHHHHH
Confidence 589999999999 99999999852 2221110 0112222 223334445688999999999999888
Q ss_pred ccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHH-
Q 028595 70 RPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ- 148 (207)
Q Consensus 70 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~- 148 (207)
+..+++.+|++++|+|+++....+. ..|+..+... ++|+++++||+|+...+.. ...++...+...
T Consensus 81 v~~~l~~aD~alLVVDa~~G~~~qT--~~~l~~a~~~--~ip~IVviNKiD~~~a~~~---------~v~~ei~~l~~~~ 147 (594)
T TIGR01394 81 VERVLGMVDGVLLLVDASEGPMPQT--RFVLKKALEL--GLKPIVVINKIDRPSARPD---------EVVDEVFDLFAEL 147 (594)
T ss_pred HHHHHHhCCEEEEEEeCCCCCcHHH--HHHHHHHHHC--CCCEEEEEECCCCCCcCHH---------HHHHHHHHHHHhh
Confidence 8999999999999999987433222 3455555443 7899999999998654310 022344444432
Q ss_pred ------hCCcEEEEeccCCCC----------CHHHHHHHHHHHHhCCC
Q 028595 149 ------IGASYYIECSSKTQQ----------NVKAVFDAAIKVVIKPP 180 (207)
Q Consensus 149 ------~~~~~~~e~Sa~~~~----------~i~~~f~~i~~~~~~~~ 180 (207)
+.+ +++.+||++|. |+..+|+.+++.+..+.
T Consensus 148 g~~~e~l~~-pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P~ 194 (594)
T TIGR01394 148 GADDEQLDF-PIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAPK 194 (594)
T ss_pred ccccccccC-cEEechhhcCcccccCcccccCHHHHHHHHHHhCCCCC
Confidence 234 78999999995 89999999999887664
No 212
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.69 E-value=9.3e-17 Score=132.85 Aligned_cols=158 Identities=13% Similarity=-0.017 Sum_probs=98.7
Q ss_pred ceeEEEEecccccceeeeeeeccCCC--CCcc------------------------ccC---ceeeee-eeEEEECCeEE
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRS--SIWD------------------------YIP---TVFDNF-SANVVAEGTTV 53 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~--~~~~------------------------~~~---t~~~~~-~~~~~~~~~~~ 53 (207)
..+|+++|..++| ||||+++|+... +... ..+ .-|.+. .....++...+
T Consensus 6 ~~~v~iiGh~d~G-KSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~~~ 84 (425)
T PRK12317 6 HLNLAVIGHVDHG-KSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDKY 84 (425)
T ss_pred EEEEEEECCCCCC-hHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecCCe
Confidence 4689999999999 999999998332 1110 000 011111 11223334457
Q ss_pred EEEEEeCCCCccccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCC
Q 028595 54 NLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPG 133 (207)
Q Consensus 54 ~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~ 133 (207)
.+.+|||||++.|.......+..+|++++|+|+++..........++..+... ...|+++++||+|+.+....
T Consensus 85 ~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~-~~~~iivviNK~Dl~~~~~~------ 157 (425)
T PRK12317 85 YFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL-GINQLIVAINKMDAVNYDEK------ 157 (425)
T ss_pred EEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc-CCCeEEEEEEccccccccHH------
Confidence 89999999998876554455788999999999987312211111222233222 23469999999999752210
Q ss_pred CcccCHHHHHHHHHHhCC----cEEEEeccCCCCCHHHHH
Q 028595 134 LVPVTTAQGEELRKQIGA----SYYIECSSKTQQNVKAVF 169 (207)
Q Consensus 134 ~~~v~~~~~~~~~~~~~~----~~~~e~Sa~~~~~i~~~f 169 (207)
......+++..+++..++ .+++++||++|+|+++++
T Consensus 158 ~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~~ 197 (425)
T PRK12317 158 RYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKKS 197 (425)
T ss_pred HHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCccccc
Confidence 000133566677766664 379999999999998744
No 213
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.69 E-value=8.6e-17 Score=122.85 Aligned_cols=173 Identities=14% Similarity=0.056 Sum_probs=116.8
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCcc------------cccccc
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED------------YNRLRP 71 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~------------~~~~~~ 71 (207)
...|++||.+|+| ||||.|.+++.+..+....+.+.+....-.+.....++.++||||--. ..+...
T Consensus 72 ~L~vavIG~PNvG-KStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~~ 150 (379)
T KOG1423|consen 72 SLYVAVIGAPNVG-KSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQNPR 150 (379)
T ss_pred EEEEEEEcCCCcc-hhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhhCHH
Confidence 3579999999999 999999999999877666666656655555555678999999999321 122334
Q ss_pred ceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccC---CCCCcccC---HHHHHHH
Q 028595 72 LSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLAD---HPGLVPVT---TAQGEEL 145 (207)
Q Consensus 72 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~---~~~~~~v~---~~~~~~~ 145 (207)
..+.+||+++.|+|+++.-...+ ...+..++.+ .++|-+++.||+|.......+-+ ......+. .+-.+++
T Consensus 151 ~a~q~AD~vvVv~Das~tr~~l~--p~vl~~l~~y-s~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~~f 227 (379)
T KOG1423|consen 151 DAAQNADCVVVVVDASATRTPLH--PRVLHMLEEY-SKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQEKF 227 (379)
T ss_pred HHHhhCCEEEEEEeccCCcCccC--hHHHHHHHHH-hcCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHHHHh
Confidence 56778999999999997444433 3445555554 48999999999998664432111 00000011 1111222
Q ss_pred HHHh------------CCcEEEEeccCCCCCHHHHHHHHHHHHhCCC
Q 028595 146 RKQI------------GASYYIECSSKTQQNVKAVFDAAIKVVIKPP 180 (207)
Q Consensus 146 ~~~~------------~~~~~~e~Sa~~~~~i~~~f~~i~~~~~~~~ 180 (207)
...- ++..+|.+||++|+||+++-++|+.++...+
T Consensus 228 ~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~gp 274 (379)
T KOG1423|consen 228 TDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPGP 274 (379)
T ss_pred ccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCCCCC
Confidence 1111 1223788999999999999999999987653
No 214
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.68 E-value=6.7e-17 Score=121.90 Aligned_cols=113 Identities=19% Similarity=0.171 Sum_probs=80.5
Q ss_pred eeEEEEecccccceeeeeeeccCCCCCcc-----------ccCc------eeeee-ee--EEEE---CCeEEEEEEEeCC
Q 028595 5 AKLACLFATQVTSFLLYVLSVSGRSSIWD-----------YIPT------VFDNF-SA--NVVA---EGTTVNLGLWDTA 61 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~~~~~~~-----------~~~t------~~~~~-~~--~~~~---~~~~~~l~i~D~~ 61 (207)
.+|+++|..++| ||||+++|+....... +..+ .+..+ .. .+.. ++..+.+.+||||
T Consensus 1 rnv~iiG~~~~G-KTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtp 79 (213)
T cd04167 1 RNVAIAGHLHHG-KTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTP 79 (213)
T ss_pred CcEEEEcCCCCC-HHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECC
Confidence 379999999999 9999999986543211 1111 11111 11 1111 3567899999999
Q ss_pred CCccccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcc
Q 028595 62 GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLR 122 (207)
Q Consensus 62 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~ 122 (207)
|++.+......++..+|++++|+|+++..+... ..++..+.. .+.|+++++||+|+.
T Consensus 80 G~~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~--~~~~~~~~~--~~~p~iiviNK~D~~ 136 (213)
T cd04167 80 GHVNFMDEVAAALRLSDGVVLVVDVVEGVTSNT--ERLIRHAIL--EGLPIVLVINKIDRL 136 (213)
T ss_pred CCcchHHHHHHHHHhCCEEEEEEECCCCCCHHH--HHHHHHHHH--cCCCEEEEEECcccC
Confidence 999998888888999999999999988766654 344444432 369999999999975
No 215
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.67 E-value=4.3e-16 Score=113.13 Aligned_cols=156 Identities=16% Similarity=0.145 Sum_probs=114.1
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeE-EEECCeEEEEEEEeCCC----------Cccccccccc
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSAN-VVAEGTTVNLGLWDTAG----------QEDYNRLRPL 72 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~l~i~D~~G----------~~~~~~~~~~ 72 (207)
..-|+++|.+||| ||||||++++++-......|.|.+.... +.+++. +.+.|.|| ++.+..+..+
T Consensus 24 ~~EIaF~GRSNVG-KSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~---~~lVDlPGYGyAkv~k~~~e~w~~~i~~ 99 (200)
T COG0218 24 LPEIAFAGRSNVG-KSSLINALTNQKNLARTSKTPGRTQLINFFEVDDE---LRLVDLPGYGYAKVPKEVKEKWKKLIEE 99 (200)
T ss_pred CcEEEEEccCccc-HHHHHHHHhCCcceeecCCCCCccceeEEEEecCc---EEEEeCCCcccccCCHHHHHHHHHHHHH
Confidence 3479999999999 9999999999887777788888877664 444443 78999999 4555666677
Q ss_pred eecC---CcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHh
Q 028595 73 SYRG---ADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI 149 (207)
Q Consensus 73 ~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 149 (207)
|++. -.+++++.|+...-.-.+. +.++.+... ++|+++++||+|.....+ ........++.+
T Consensus 100 YL~~R~~L~~vvlliD~r~~~~~~D~--em~~~l~~~--~i~~~vv~tK~DKi~~~~-----------~~k~l~~v~~~l 164 (200)
T COG0218 100 YLEKRANLKGVVLLIDARHPPKDLDR--EMIEFLLEL--GIPVIVVLTKADKLKKSE-----------RNKQLNKVAEEL 164 (200)
T ss_pred HHhhchhheEEEEEEECCCCCcHHHH--HHHHHHHHc--CCCeEEEEEccccCChhH-----------HHHHHHHHHHHh
Confidence 7764 4688899998876555443 445555443 899999999999876544 233334444433
Q ss_pred CC----c-EEEEeccCCCCCHHHHHHHHHHHHhC
Q 028595 150 GA----S-YYIECSSKTQQNVKAVFDAAIKVVIK 178 (207)
Q Consensus 150 ~~----~-~~~e~Sa~~~~~i~~~f~~i~~~~~~ 178 (207)
+. . .++.+|+.++.|++++...|.+.+..
T Consensus 165 ~~~~~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~~ 198 (200)
T COG0218 165 KKPPPDDQWVVLFSSLKKKGIDELKAKILEWLKE 198 (200)
T ss_pred cCCCCccceEEEEecccccCHHHHHHHHHHHhhc
Confidence 32 1 16779999999999999999887654
No 216
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.67 E-value=3.4e-16 Score=131.31 Aligned_cols=155 Identities=14% Similarity=0.124 Sum_probs=118.2
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCcccc------ccccceec-
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYN------RLRPLSYR- 75 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~------~~~~~~~~- 75 (207)
..+|+++|+||+| ||||.|++++.+..-..-|-++.+. .-.+...+ ..+++.|+||--... ...++|+.
T Consensus 3 ~~~valvGNPNvG-KTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~~--~~i~ivDLPG~YSL~~~S~DE~Var~~ll~ 79 (653)
T COG0370 3 KLTVALVGNPNVG-KTTLFNALTGANQKVGNWPGVTVEKKEGKLKYKG--HEIEIVDLPGTYSLTAYSEDEKVARDFLLE 79 (653)
T ss_pred cceEEEecCCCcc-HHHHHHHHhccCceecCCCCeeEEEEEEEEEecC--ceEEEEeCCCcCCCCCCCchHHHHHHHHhc
Confidence 4569999999999 9999999999886555555555444 22455455 448899999944332 23344543
Q ss_pred -CCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEE
Q 028595 76 -GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYY 154 (207)
Q Consensus 76 -~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 154 (207)
+.|+++-|.|.+|.+..-.+.-++++. +.|++++.|++|..+.+. ..-+.+++.+.+|. |.
T Consensus 80 ~~~D~ivnVvDAtnLeRnLyltlQLlE~------g~p~ilaLNm~D~A~~~G-----------i~ID~~~L~~~LGv-PV 141 (653)
T COG0370 80 GKPDLIVNVVDATNLERNLYLTLQLLEL------GIPMILALNMIDEAKKRG-----------IRIDIEKLSKLLGV-PV 141 (653)
T ss_pred CCCCEEEEEcccchHHHHHHHHHHHHHc------CCCeEEEeccHhhHHhcC-----------CcccHHHHHHHhCC-CE
Confidence 479999999999988777763333332 899999999999987765 45677889999999 99
Q ss_pred EEeccCCCCCHHHHHHHHHHHHhCC
Q 028595 155 IECSSKTQQNVKAVFDAAIKVVIKP 179 (207)
Q Consensus 155 ~e~Sa~~~~~i~~~f~~i~~~~~~~ 179 (207)
+++||++|.|++++...+++....+
T Consensus 142 v~tvA~~g~G~~~l~~~i~~~~~~~ 166 (653)
T COG0370 142 VPTVAKRGEGLEELKRAIIELAESK 166 (653)
T ss_pred EEEEeecCCCHHHHHHHHHHhcccc
Confidence 9999999999999999998765544
No 217
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.67 E-value=2.3e-16 Score=129.51 Aligned_cols=159 Identities=15% Similarity=0.095 Sum_probs=104.2
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCCccccC------ceeee-----------------eeeEEEECC------eEEE
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIP------TVFDN-----------------FSANVVAEG------TTVN 54 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~------t~~~~-----------------~~~~~~~~~------~~~~ 54 (207)
..+|+++|..++| ||||+++|.+.... .+.. |+... |......++ ....
T Consensus 4 ~~~i~iiG~~~~G-KSTL~~~Lt~~~~d-~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (406)
T TIGR03680 4 EVNIGMVGHVDHG-KTTLTKALTGVWTD-THSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR 81 (406)
T ss_pred eEEEEEEccCCCC-HHHHHHHHhCeecc-cCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence 4689999999999 99999999754221 1111 11100 101001011 1467
Q ss_pred EEEEeCCCCccccccccceecCCcEEEEEEeCCChh----hHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccC
Q 028595 55 LGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA----SYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLAD 130 (207)
Q Consensus 55 l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~----s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~ 130 (207)
+.+||+||+++|...+...+..+|++++|+|+++.. +.+.+ ..+... ...|+++++||+|+.+....
T Consensus 82 i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l-----~~l~~~-gi~~iIVvvNK~Dl~~~~~~--- 152 (406)
T TIGR03680 82 VSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHL-----MALEII-GIKNIVIVQNKIDLVSKEKA--- 152 (406)
T ss_pred EEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHH-----HHHHHc-CCCeEEEEEEccccCCHHHH---
Confidence 899999999999877777777899999999999643 33333 222221 23579999999999754321
Q ss_pred CCCCcccCHHHHHHHHHHh---CCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 028595 131 HPGLVPVTTAQGEELRKQI---GASYYIECSSKTQQNVKAVFDAAIKVVIKP 179 (207)
Q Consensus 131 ~~~~~~v~~~~~~~~~~~~---~~~~~~e~Sa~~~~~i~~~f~~i~~~~~~~ 179 (207)
....+++..+.+.. +. +++++||++|+|+++++++|...+..+
T Consensus 153 -----~~~~~~i~~~l~~~~~~~~-~ii~vSA~~g~gi~~L~e~L~~~l~~~ 198 (406)
T TIGR03680 153 -----LENYEEIKEFVKGTVAENA-PIIPVSALHNANIDALLEAIEKFIPTP 198 (406)
T ss_pred -----HHHHHHHHhhhhhcccCCC-eEEEEECCCCCChHHHHHHHHHhCCCC
Confidence 00224444554443 44 899999999999999999999876543
No 218
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.66 E-value=3e-16 Score=117.92 Aligned_cols=153 Identities=16% Similarity=0.027 Sum_probs=93.7
Q ss_pred eEEEEecccccceeeeeeeccCCC--CCccc------------------------cCc---eeeee-eeEEEECCeEEEE
Q 028595 6 KLACLFATQVTSFLLYVLSVSGRS--SIWDY------------------------IPT---VFDNF-SANVVAEGTTVNL 55 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~~~--~~~~~------------------------~~t---~~~~~-~~~~~~~~~~~~l 55 (207)
+|+++|..++| ||||+++|+... ..... .+. -+.+. ............+
T Consensus 1 ~i~iiG~~~~G-KStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~ 79 (208)
T cd04166 1 RFLTCGSVDDG-KSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKF 79 (208)
T ss_pred CEEEEECCCCC-HHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceE
Confidence 58999999999 999999997432 11000 000 00011 0111111223567
Q ss_pred EEEeCCCCccccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCc
Q 028595 56 GLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLV 135 (207)
Q Consensus 56 ~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~ 135 (207)
.+|||||++.+.......++.+|++++|+|+++....+.. .....+... ...++++|+||+|+...... ..
T Consensus 80 ~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~--~~~~~~~~~-~~~~iIvviNK~D~~~~~~~------~~ 150 (208)
T cd04166 80 IIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTR--RHSYILSLL-GIRHVVVAVNKMDLVDYSEE------VF 150 (208)
T ss_pred EEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHH--HHHHHHHHc-CCCcEEEEEEchhcccCCHH------HH
Confidence 8999999988766556678899999999999875433222 222222222 23457889999998643210 00
Q ss_pred ccCHHHHHHHHHHhCC--cEEEEeccCCCCCHHHH
Q 028595 136 PVTTAQGEELRKQIGA--SYYIECSSKTQQNVKAV 168 (207)
Q Consensus 136 ~v~~~~~~~~~~~~~~--~~~~e~Sa~~~~~i~~~ 168 (207)
.....+.+.+++.++. .+++.+||++|.|+.+.
T Consensus 151 ~~i~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~ 185 (208)
T cd04166 151 EEIVADYLAFAAKLGIEDITFIPISALDGDNVVSR 185 (208)
T ss_pred HHHHHHHHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence 0023456666777774 25899999999998753
No 219
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.65 E-value=4.4e-16 Score=127.89 Aligned_cols=160 Identities=16% Similarity=0.080 Sum_probs=101.2
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCCcccc------Cceeeee-----------------eeEEEEC--C----eEEE
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYI------PTVFDNF-----------------SANVVAE--G----TTVN 54 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~------~t~~~~~-----------------~~~~~~~--~----~~~~ 54 (207)
..+|+++|..++| ||||+.+|.+.- .+... -|+...+ ......+ + ....
T Consensus 9 ~~ni~v~Gh~d~G-KSTL~~~L~~~~-~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (411)
T PRK04000 9 EVNIGMVGHVDHG-KTTLVQALTGVW-TDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLRR 86 (411)
T ss_pred cEEEEEEccCCCC-HHHHHHHhhCee-cccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccccE
Confidence 4689999999999 999999986532 11111 1111111 0100011 1 1367
Q ss_pred EEEEeCCCCccccccccceecCCcEEEEEEeCCCh----hhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccC
Q 028595 55 LGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSR----ASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLAD 130 (207)
Q Consensus 55 l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~ 130 (207)
+.+|||||++.+..........+|++++|+|+++. ++.+.+ ..+... ...|+++|+||+|+.+....
T Consensus 87 i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l-----~~l~~~-~i~~iiVVlNK~Dl~~~~~~--- 157 (411)
T PRK04000 87 VSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHL-----MALDII-GIKNIVIVQNKIDLVSKERA--- 157 (411)
T ss_pred EEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHH-----HHHHHc-CCCcEEEEEEeeccccchhH---
Confidence 89999999988765444445567999999999964 333332 122221 23478999999999754321
Q ss_pred CCCCcccCHHHHHHHHHHh--CCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 028595 131 HPGLVPVTTAQGEELRKQI--GASYYIECSSKTQQNVKAVFDAAIKVVIKP 179 (207)
Q Consensus 131 ~~~~~~v~~~~~~~~~~~~--~~~~~~e~Sa~~~~~i~~~f~~i~~~~~~~ 179 (207)
....++++.+++.+ ...+++++||++|.|++++++.|...+..+
T Consensus 158 -----~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l~~~ 203 (411)
T PRK04000 158 -----LENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEIPTP 203 (411)
T ss_pred -----HHHHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhCCCC
Confidence 00224455555432 123899999999999999999998877543
No 220
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.65 E-value=7e-16 Score=116.86 Aligned_cols=155 Identities=14% Similarity=0.040 Sum_probs=97.0
Q ss_pred eEEEEecccccceeeeeeeccCCCCCccccCc-----------------------eeeeeeeE--------------EEE
Q 028595 6 KLACLFATQVTSFLLYVLSVSGRSSIWDYIPT-----------------------VFDNFSAN--------------VVA 48 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t-----------------------~~~~~~~~--------------~~~ 48 (207)
||+++|..++| ||||+++|..+.+....... .+-+.... -..
T Consensus 1 ~v~~~G~~~~G-Kttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 79 (224)
T cd04165 1 RVAVVGNVDAG-KSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEIC 79 (224)
T ss_pred CEEEECCCCCC-HHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceee
Confidence 68999999999 99999999976654311100 00000000 000
Q ss_pred CCeEEEEEEEeCCCCcccccccccee--cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcc
Q 028595 49 EGTTVNLGLWDTAGQEDYNRLRPLSY--RGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKH 126 (207)
Q Consensus 49 ~~~~~~l~i~D~~G~~~~~~~~~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~ 126 (207)
......+.+.||||+++|.......+ ..+|++++|.|+.....-.. ..++..+... ++|+++|.||+|+.+...
T Consensus 80 ~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d--~~~l~~l~~~--~ip~ivvvNK~D~~~~~~ 155 (224)
T cd04165 80 EKSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMT--KEHLGLALAL--NIPVFVVVTKIDLAPANI 155 (224)
T ss_pred eeCCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHH--HHHHHHHHHc--CCCEEEEEECccccCHHH
Confidence 11235688999999988854333333 36899999999887644443 3444454443 789999999999864332
Q ss_pred cccCCCCCcccCHHHHHHHHHHh-------------------------CCcEEEEeccCCCCCHHHHHHHHH
Q 028595 127 YLADHPGLVPVTTAQGEELRKQI-------------------------GASYYIECSSKTQQNVKAVFDAAI 173 (207)
Q Consensus 127 ~~~~~~~~~~v~~~~~~~~~~~~-------------------------~~~~~~e~Sa~~~~~i~~~f~~i~ 173 (207)
. ....++..++.... ...|++.+||.+|+|++++.+.|.
T Consensus 156 ~--------~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~ 219 (224)
T cd04165 156 L--------QETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLN 219 (224)
T ss_pred H--------HHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHH
Confidence 1 00222233332211 123889999999999999987764
No 221
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.65 E-value=8.8e-16 Score=117.34 Aligned_cols=113 Identities=18% Similarity=0.094 Sum_probs=79.7
Q ss_pred eEEEEecccccceeeeeeeccCCCCC--------c-----cccC---ceeeee-eeEEEECCeEEEEEEEeCCCCccccc
Q 028595 6 KLACLFATQVTSFLLYVLSVSGRSSI--------W-----DYIP---TVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNR 68 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~~~~~--------~-----~~~~---t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~ 68 (207)
+|+++|..++| ||||+++++...-. . ++.+ ..+... .....+......+.+|||||+..+..
T Consensus 1 ni~i~G~~~~G-KTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~f~~ 79 (237)
T cd04168 1 NIGILAHVDAG-KTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFIA 79 (237)
T ss_pred CEEEEcCCCCC-HHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccchHH
Confidence 58999999999 99999999753110 0 0100 001111 11223333457899999999999988
Q ss_pred cccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCccc
Q 028595 69 LRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRE 123 (207)
Q Consensus 69 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~ 123 (207)
.+..+++.+|++++|+|.++....+. ..+...+... ++|+++++||+|+..
T Consensus 80 ~~~~~l~~aD~~IlVvd~~~g~~~~~--~~~~~~~~~~--~~P~iivvNK~D~~~ 130 (237)
T cd04168 80 EVERSLSVLDGAILVISAVEGVQAQT--RILWRLLRKL--NIPTIIFVNKIDRAG 130 (237)
T ss_pred HHHHHHHHhCeEEEEEeCCCCCCHHH--HHHHHHHHHc--CCCEEEEEECccccC
Confidence 88889999999999999998655433 3455555443 799999999999874
No 222
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.64 E-value=8.8e-16 Score=114.42 Aligned_cols=170 Identities=13% Similarity=0.061 Sum_probs=100.8
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCCccccCceee---eeeeEEEECCeEEEEEEEeCCCCccccccccce-----ec
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFD---NFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLS-----YR 75 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~---~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~-----~~ 75 (207)
+.||+++|.+++| ||||+|.+++........++.+. +........+....+.+|||||..........| +.
T Consensus 1 ~~kI~i~G~~g~G-KSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~~~l~~~~~~ 79 (197)
T cd04104 1 PLNIAVTGESGAG-KSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPPDDYLEEMKFS 79 (197)
T ss_pred CeEEEEECCCCCC-HHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCCHHHHHHHhCcc
Confidence 3689999999999 99999999986654322222221 001111111112368999999975432222223 56
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCC--cccCHHH----HHHHHHHh
Q 028595 76 GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGL--VPVTTAQ----GEELRKQI 149 (207)
Q Consensus 76 ~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~--~~v~~~~----~~~~~~~~ 149 (207)
++|+++++.+- .+......|+..+.+. +.|+++|+||+|+........ .+.. .....++ ........
T Consensus 80 ~~d~~l~v~~~----~~~~~d~~~~~~l~~~--~~~~ilV~nK~D~~~~~~~~~-~~~~~~~~~~l~~i~~~~~~~~~~~ 152 (197)
T cd04104 80 EYDFFIIISST----RFSSNDVKLAKAIQCM--GKKFYFVRTKVDRDLSNEQRS-KPRSFNREQVLQEIRDNCLENLQEA 152 (197)
T ss_pred CcCEEEEEeCC----CCCHHHHHHHHHHHHh--CCCEEEEEecccchhhhhhcc-ccccccHHHHHHHHHHHHHHHHHHc
Confidence 78998888542 2333324666677664 689999999999853322100 0000 0001112 22222222
Q ss_pred C--CcEEEEeccC--CCCCHHHHHHHHHHHHhCCCc
Q 028595 150 G--ASYYIECSSK--TQQNVKAVFDAAIKVVIKPPQ 181 (207)
Q Consensus 150 ~--~~~~~e~Sa~--~~~~i~~~f~~i~~~~~~~~~ 181 (207)
+ ..++|.+|+. .+.++..+.+.++..+..++.
T Consensus 153 ~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~~~~ 188 (197)
T cd04104 153 GVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPAHKR 188 (197)
T ss_pred CCCCCCEEEEeCCChhhcChHHHHHHHHHHhhHHHH
Confidence 2 3478899998 578999999999998876543
No 223
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.63 E-value=1.2e-15 Score=113.32 Aligned_cols=149 Identities=15% Similarity=0.128 Sum_probs=96.5
Q ss_pred eeEEEEecccccceeeeeeeccCCCC--------C---ccccC---ceeeee-eeEEEECCeEEEEEEEeCCCCcccccc
Q 028595 5 AKLACLFATQVTSFLLYVLSVSGRSS--------I---WDYIP---TVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRL 69 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~~~~--------~---~~~~~---t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~ 69 (207)
.+|+++|..++| ||||+++|+.... . -+..+ .-|.+. ...........++.+.||||+..+...
T Consensus 3 ~ni~iiGh~~~G-KTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~~~~~ 81 (195)
T cd01884 3 VNVGTIGHVDHG-KTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYIKN 81 (195)
T ss_pred EEEEEECCCCCC-HHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHHHHHHH
Confidence 689999999999 9999999975310 0 00000 011111 112223334567889999999887666
Q ss_pred ccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCc-EEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHH
Q 028595 70 RPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVP-VVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ 148 (207)
Q Consensus 70 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~p-iivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 148 (207)
....+..+|++++|+|++....-+. ..++..+... ++| ++++.||+|+....+. .....+++..+...
T Consensus 82 ~~~~~~~~D~~ilVvda~~g~~~~~--~~~~~~~~~~--~~~~iIvviNK~D~~~~~~~-------~~~~~~~i~~~l~~ 150 (195)
T cd01884 82 MITGAAQMDGAILVVSATDGPMPQT--REHLLLARQV--GVPYIVVFLNKADMVDDEEL-------LELVEMEVRELLSK 150 (195)
T ss_pred HHHHhhhCCEEEEEEECCCCCcHHH--HHHHHHHHHc--CCCcEEEEEeCCCCCCcHHH-------HHHHHHHHHHHHHH
Confidence 6667788999999999987533332 2334444432 566 7899999998643321 00123456667666
Q ss_pred hCC----cEEEEeccCCCCCH
Q 028595 149 IGA----SYYIECSSKTQQNV 165 (207)
Q Consensus 149 ~~~----~~~~e~Sa~~~~~i 165 (207)
.++ .+++.+||++|.|+
T Consensus 151 ~g~~~~~v~iipiSa~~g~n~ 171 (195)
T cd01884 151 YGFDGDNTPIVRGSALKALEG 171 (195)
T ss_pred hcccccCCeEEEeeCccccCC
Confidence 654 58999999999885
No 224
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.63 E-value=7.3e-16 Score=116.45 Aligned_cols=168 Identities=18% Similarity=0.227 Sum_probs=105.1
Q ss_pred eEEEEecccccceeeeeeeccCCCCCcccc---CceeeeeeeEEEECCeEEEEEEEeCCCCccccc-----cccceecCC
Q 028595 6 KLACLFATQVTSFLLYVLSVSGRSSIWDYI---PTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNR-----LRPLSYRGA 77 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~~~~~~~~~---~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~-----~~~~~~~~~ 77 (207)
||+++|..++| |||+.+.+..+-.+.++. +|...+... +. ....+.+++||+|||..+-. .....++++
T Consensus 1 KiLLmG~~~SG-KTSi~~vIF~~~~p~dT~~L~~T~~ve~~~-v~-~~~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v 77 (232)
T PF04670_consen 1 KILLMGPRRSG-KTSIRSVIFHKYSPRDTLRLEPTIDVEKSH-VR-FLSFLPLNIWDCPGQDDFMENYFNSQREEIFSNV 77 (232)
T ss_dssp EEEEEESTTSS-HHHHHHHHHS---GGGGGG-----SEEEEE-EE-CTTSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTE
T ss_pred CEEEEcCCCCC-hhhHHHHHHcCCCchhccccCCcCCceEEE-Ee-cCCCcEEEEEEcCCccccccccccccHHHHHhcc
Confidence 79999999999 999999988775443322 443322211 11 12347899999999975533 346778999
Q ss_pred cEEEEEEeCCChhhHHHH--HHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhC--CcE
Q 028595 78 DVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG--ASY 153 (207)
Q Consensus 78 d~~i~v~d~~~~~s~~~~--~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~~~ 153 (207)
.++|+|+|+.+.+-.+.+ ....+..+.+.+|++.+-++.+|.|+..+.... .......+.....+...+ ...
T Consensus 78 ~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~~r~----~~~~~~~~~i~~~~~~~~~~~~~ 153 (232)
T PF04670_consen 78 GVLIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSEDERE----EIFRDIQQRIRDELEDLGIEDIT 153 (232)
T ss_dssp SEEEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-HHHHH----HHHHHHHHHHHHHHHHTT-TSEE
T ss_pred CEEEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCHHHHH----HHHHHHHHHHHHHhhhccccceE
Confidence 999999999955433333 133445556677999999999999986543210 000002233444455555 127
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHhCCCc
Q 028595 154 YIECSSKTQQNVKAVFDAAIKVVIKPPQ 181 (207)
Q Consensus 154 ~~e~Sa~~~~~i~~~f~~i~~~~~~~~~ 181 (207)
++.||.-+ +.+-++|..+++.+++..+
T Consensus 154 ~~~TSI~D-~Sly~A~S~Ivq~LiP~~~ 180 (232)
T PF04670_consen 154 FFLTSIWD-ESLYEAWSKIVQKLIPNLS 180 (232)
T ss_dssp EEEE-TTS-THHHHHHHHHHHTTSTTHC
T ss_pred EEeccCcC-cHHHHHHHHHHHHHcccHH
Confidence 88899887 7999999999999987644
No 225
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.62 E-value=3e-15 Score=114.99 Aligned_cols=155 Identities=15% Similarity=0.194 Sum_probs=109.6
Q ss_pred ceeEEEEecccccceeeeeeeccCCCC-CccccCceeeeeeeEEEECCeEEEEEEEeCCCC----ccccccccce---ec
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSS-IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQ----EDYNRLRPLS---YR 75 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~----~~~~~~~~~~---~~ 75 (207)
+.-|.+||.||+| ||||++.+...+- ...|.-|+-....-.+..++ -.++.+-|+||- ..-+.+-..| +.
T Consensus 196 iadvGLVG~PNAG-KSTLL~als~AKpkVa~YaFTTL~P~iG~v~ydd-f~q~tVADiPGiI~GAh~nkGlG~~FLrHiE 273 (366)
T KOG1489|consen 196 IADVGLVGFPNAG-KSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYDD-FSQITVADIPGIIEGAHMNKGLGYKFLRHIE 273 (366)
T ss_pred ecccceecCCCCc-HHHHHHHhhccCCcccccceeeeccccceeeccc-cceeEeccCccccccccccCcccHHHHHHHH
Confidence 4568899999999 9999999987763 33444333222222333333 233889999983 2334444444 45
Q ss_pred CCcEEEEEEeCCCh---hhHHHHHHHHHHHHhhcC---CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHh
Q 028595 76 GADVFVLAFSLVSR---ASYENVLKKWIPELQHYS---PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI 149 (207)
Q Consensus 76 ~~d~~i~v~d~~~~---~s~~~~~~~~~~~i~~~~---~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 149 (207)
.++..+||.|++.. +.++.+ ..+..+++.+. .+.|.++|+||+|+++.. ....+++++.+
T Consensus 274 R~~~l~fVvD~s~~~~~~p~~~~-~lL~~ELe~yek~L~~rp~liVaNKiD~~eae-------------~~~l~~L~~~l 339 (366)
T KOG1489|consen 274 RCKGLLFVVDLSGKQLRNPWQQL-QLLIEELELYEKGLADRPALIVANKIDLPEAE-------------KNLLSSLAKRL 339 (366)
T ss_pred hhceEEEEEECCCcccCCHHHHH-HHHHHHHHHHhhhhccCceEEEEeccCchhHH-------------HHHHHHHHHHc
Confidence 69999999999998 777776 55555555443 589999999999986432 23357788887
Q ss_pred CCcEEEEeccCCCCCHHHHHHHHHH
Q 028595 150 GASYYIECSSKTQQNVKAVFDAAIK 174 (207)
Q Consensus 150 ~~~~~~e~Sa~~~~~i~~~f~~i~~ 174 (207)
.-...+++||+++++++++...+-+
T Consensus 340 q~~~V~pvsA~~~egl~~ll~~lr~ 364 (366)
T KOG1489|consen 340 QNPHVVPVSAKSGEGLEELLNGLRE 364 (366)
T ss_pred CCCcEEEeeeccccchHHHHHHHhh
Confidence 7645899999999999999987754
No 226
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.60 E-value=9.3e-15 Score=115.76 Aligned_cols=80 Identities=15% Similarity=0.074 Sum_probs=57.0
Q ss_pred EEEEecccccceeeeeeeccCCCCC------ccccCceeeeeeeE----------------EEECC-eEEEEEEEeCCCC
Q 028595 7 LACLFATQVTSFLLYVLSVSGRSSI------WDYIPTVFDNFSAN----------------VVAEG-TTVNLGLWDTAGQ 63 (207)
Q Consensus 7 i~iiG~~~~GgKssli~~l~~~~~~------~~~~~t~~~~~~~~----------------~~~~~-~~~~l~i~D~~G~ 63 (207)
|+++|.+++| ||||+|++++.... ..+.|++|..+... ...++ ..+.+++||+||.
T Consensus 1 i~ivG~pnvG-KStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGl 79 (318)
T cd01899 1 IGLVGKPNAG-KSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGL 79 (318)
T ss_pred CEEECCCCCC-HHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCC
Confidence 5899999999 99999999988743 12234444333211 11233 3478999999997
Q ss_pred ----ccccccccce---ecCCcEEEEEEeCC
Q 028595 64 ----EDYNRLRPLS---YRGADVFVLAFSLV 87 (207)
Q Consensus 64 ----~~~~~~~~~~---~~~~d~~i~v~d~~ 87 (207)
+.+.++.+.+ +++||++++|+|++
T Consensus 80 v~ga~~~~glg~~fL~~ir~aD~ii~Vvd~~ 110 (318)
T cd01899 80 VPGAHEGKGLGNKFLDDLRDADALIHVVDAS 110 (318)
T ss_pred CCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 5556665554 88999999999997
No 227
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.59 E-value=9.8e-15 Score=110.26 Aligned_cols=113 Identities=13% Similarity=0.075 Sum_probs=78.6
Q ss_pred eeEEEEecccccceeeeeeeccCCC--CCccc------cCce------eeee---eeEEEE--------CCeEEEEEEEe
Q 028595 5 AKLACLFATQVTSFLLYVLSVSGRS--SIWDY------IPTV------FDNF---SANVVA--------EGTTVNLGLWD 59 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~~~--~~~~~------~~t~------~~~~---~~~~~~--------~~~~~~l~i~D 59 (207)
.+|+++|...+| ||||+.+|+... ..... ..+. +.+. ...+.. ++..+.+.+||
T Consensus 1 RNvaiiGhvd~G-KTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiD 79 (222)
T cd01885 1 RNICIIAHVDHG-KTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLID 79 (222)
T ss_pred CeEEEECCCCCC-HHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEEC
Confidence 379999999999 999999997432 11000 0000 0000 001112 24578999999
Q ss_pred CCCCccccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcc
Q 028595 60 TAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLR 122 (207)
Q Consensus 60 ~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~ 122 (207)
|||++.|......+++.+|++++|+|+++..+.+.. ..+..... .++|+++++||+|+.
T Consensus 80 TPG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~--~~l~~~~~--~~~p~ilviNKiD~~ 138 (222)
T cd01885 80 SPGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTE--TVLRQALK--ERVKPVLVINKIDRL 138 (222)
T ss_pred CCCccccHHHHHHHHHhcCeeEEEEECCCCCCHHHH--HHHHHHHH--cCCCEEEEEECCCcc
Confidence 999999999889999999999999999987666653 23333322 268999999999975
No 228
>PRK12736 elongation factor Tu; Reviewed
Probab=99.59 E-value=5.2e-15 Score=121.15 Aligned_cols=164 Identities=18% Similarity=0.146 Sum_probs=104.2
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCCc------ccc-----C---ceeeee-eeEEEECCeEEEEEEEeCCCCccccc
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSIW------DYI-----P---TVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNR 68 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~------~~~-----~---t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~ 68 (207)
..+|+++|..++| ||||+++|++..... .+. + .-|.+. ............+.+|||||+++|..
T Consensus 12 ~~ni~i~Ghvd~G-KSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~~f~~ 90 (394)
T PRK12736 12 HVNIGTIGHVDHG-KTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHADYVK 90 (394)
T ss_pred eeEEEEEccCCCc-HHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHHHHHH
Confidence 4679999999999 999999998531100 000 0 111111 11223333445778999999988765
Q ss_pred cccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCc-EEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHH
Q 028595 69 LRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVP-VVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRK 147 (207)
Q Consensus 69 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~p-iivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~ 147 (207)
.....+..+|++++|+|+++...-+.. .++..+... ++| ++++.||+|+.+..+.. ....++...++.
T Consensus 91 ~~~~~~~~~d~~llVvd~~~g~~~~t~--~~~~~~~~~--g~~~~IvviNK~D~~~~~~~~-------~~i~~~i~~~l~ 159 (394)
T PRK12736 91 NMITGAAQMDGAILVVAATDGPMPQTR--EHILLARQV--GVPYLVVFLNKVDLVDDEELL-------ELVEMEVRELLS 159 (394)
T ss_pred HHHHHHhhCCEEEEEEECCCCCchhHH--HHHHHHHHc--CCCEEEEEEEecCCcchHHHH-------HHHHHHHHHHHH
Confidence 555556778999999999874333222 233333332 677 67899999987433210 002246667776
Q ss_pred HhCC----cEEEEeccCCCC--------CHHHHHHHHHHHHhCC
Q 028595 148 QIGA----SYYIECSSKTQQ--------NVKAVFDAAIKVVIKP 179 (207)
Q Consensus 148 ~~~~----~~~~e~Sa~~~~--------~i~~~f~~i~~~~~~~ 179 (207)
..++ .+++.+||++|. ++.++++.+.+.+..+
T Consensus 160 ~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp~~ 203 (394)
T PRK12736 160 EYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYIPTP 203 (394)
T ss_pred HhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhCCCC
Confidence 6664 479999999983 5778888877766533
No 229
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.59 E-value=1.1e-14 Score=113.58 Aligned_cols=145 Identities=12% Similarity=0.039 Sum_probs=93.6
Q ss_pred cceeEEEEecccccceeeeeeeccCCCCCcc----------ccCceeeee-eeEEEECCeEEEEEEEeCCCCccc-----
Q 028595 3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWD----------YIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDY----- 66 (207)
Q Consensus 3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~----------~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~----- 66 (207)
..++|+++|.+++| ||||+|+|++..+... ..+|..... ...+..+|..+.+.+|||||....
T Consensus 3 ~~f~I~vvG~sg~G-KSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~ 81 (276)
T cd01850 3 FQFNIMVVGESGLG-KSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSD 81 (276)
T ss_pred cEEEEEEEcCCCCC-HHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchh
Confidence 56899999999999 9999999998876543 344443332 445566788899999999993221
Q ss_pred ---------------------cccccceecC--CcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCccc
Q 028595 67 ---------------------NRLRPLSYRG--ADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRE 123 (207)
Q Consensus 67 ---------------------~~~~~~~~~~--~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~ 123 (207)
...+...+.+ +|+++++.+.+.. ........++..+.. .+|+++|+||+|+..
T Consensus 82 ~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~-~l~~~D~~~lk~l~~---~v~vi~VinK~D~l~ 157 (276)
T cd01850 82 CWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGH-GLKPLDIEFMKRLSK---RVNIIPVIAKADTLT 157 (276)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCC-CCCHHHHHHHHHHhc---cCCEEEEEECCCcCC
Confidence 1112244554 5566666665531 111111234444443 689999999999865
Q ss_pred CcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCC
Q 028595 124 DKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT 161 (207)
Q Consensus 124 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 161 (207)
..+. ......+.+.++.+++ ++|.+....
T Consensus 158 ~~e~--------~~~k~~i~~~l~~~~i-~~~~~~~~~ 186 (276)
T cd01850 158 PEEL--------KEFKQRIMEDIEEHNI-KIYKFPEDE 186 (276)
T ss_pred HHHH--------HHHHHHHHHHHHHcCC-ceECCCCCc
Confidence 3221 0245667788888887 777766543
No 230
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.58 E-value=2.3e-15 Score=113.95 Aligned_cols=150 Identities=13% Similarity=-0.022 Sum_probs=91.3
Q ss_pred eEEEEecccccceeeeeeeccCCC--CCc------------------------cccCc---eeeee-eeEEEECCeEEEE
Q 028595 6 KLACLFATQVTSFLLYVLSVSGRS--SIW------------------------DYIPT---VFDNF-SANVVAEGTTVNL 55 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~~~--~~~------------------------~~~~t---~~~~~-~~~~~~~~~~~~l 55 (207)
+|+++|..++| ||||+.+|+... ... ++.+. -|.+. .....+......+
T Consensus 1 nv~i~Gh~~~G-KttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i 79 (219)
T cd01883 1 NLVVIGHVDAG-KSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRF 79 (219)
T ss_pred CEEEecCCCCC-hHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEE
Confidence 48999999999 999999986321 000 00000 01111 1112222335788
Q ss_pred EEEeCCCCccccccccceecCCcEEEEEEeCCChh-------hHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccC---c
Q 028595 56 GLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA-------SYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED---K 125 (207)
Q Consensus 56 ~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~-------s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~---~ 125 (207)
.+|||||+..+.......+..+|++++|+|+++.. ..+.. ..+ ...... ...|+++++||+|+... .
T Consensus 80 ~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~-~~~-~~~~~~-~~~~iiivvNK~Dl~~~~~~~ 156 (219)
T cd01883 80 TILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTR-EHA-LLARTL-GVKQLIVAVNKMDDVTVNWSE 156 (219)
T ss_pred EEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchH-HHH-HHHHHc-CCCeEEEEEEccccccccccH
Confidence 99999999877666666677899999999999842 11211 222 222221 24689999999999742 1
Q ss_pred ccccCCCCCcccCHHHHHHHHHHhCC----cEEEEeccCCCCCHH
Q 028595 126 HYLADHPGLVPVTTAQGEELRKQIGA----SYYIECSSKTQQNVK 166 (207)
Q Consensus 126 ~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~e~Sa~~~~~i~ 166 (207)
.. .....+++..+.+.++. .+++++||++|.|++
T Consensus 157 ~~-------~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 157 ER-------YDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred HH-------HHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence 10 00022334445555554 379999999999987
No 231
>PRK12735 elongation factor Tu; Reviewed
Probab=99.58 E-value=8.1e-15 Score=120.09 Aligned_cols=162 Identities=14% Similarity=0.083 Sum_probs=102.9
Q ss_pred ceeEEEEecccccceeeeeeeccCC-------CCC--ccccC-----ceeeee-eeEEEECCeEEEEEEEeCCCCccccc
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGR-------SSI--WDYIP-----TVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNR 68 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~-------~~~--~~~~~-----t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~ 68 (207)
..+|+++|..++| ||||+++|++. .+. ..... .-|.+. ...........++.++||||++.|..
T Consensus 12 ~~~i~iiGhvd~G-KSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~~f~~ 90 (396)
T PRK12735 12 HVNVGTIGHVDHG-KTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADYVK 90 (396)
T ss_pred eEEEEEECcCCCC-HHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHHHHHH
Confidence 3579999999999 99999999852 110 00000 011111 11222333345678999999988765
Q ss_pred cccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEE-EEeeCCCcccCcccccCCCCCcccCHHHHHHHHH
Q 028595 69 LRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVV-LVGTKLDLREDKHYLADHPGLVPVTTAQGEELRK 147 (207)
Q Consensus 69 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~pii-vv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~ 147 (207)
.....+..+|++++|+|+.+....+. ..++..+.. .++|.+ ++.||+|+.+..+. .....+++..+++
T Consensus 91 ~~~~~~~~aD~~llVvda~~g~~~qt--~e~l~~~~~--~gi~~iivvvNK~Dl~~~~~~-------~~~~~~ei~~~l~ 159 (396)
T PRK12735 91 NMITGAAQMDGAILVVSAADGPMPQT--REHILLARQ--VGVPYIVVFLNKCDMVDDEEL-------LELVEMEVRELLS 159 (396)
T ss_pred HHHhhhccCCEEEEEEECCCCCchhH--HHHHHHHHH--cCCCeEEEEEEecCCcchHHH-------HHHHHHHHHHHHH
Confidence 55566778999999999987433332 233334433 267855 68999999743221 0012346777777
Q ss_pred HhCC----cEEEEeccCCCC----------CHHHHHHHHHHHHh
Q 028595 148 QIGA----SYYIECSSKTQQ----------NVKAVFDAAIKVVI 177 (207)
Q Consensus 148 ~~~~----~~~~e~Sa~~~~----------~i~~~f~~i~~~~~ 177 (207)
.++. .+++++||.++. ++.++++.+...+.
T Consensus 160 ~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~ 203 (396)
T PRK12735 160 KYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSYIP 203 (396)
T ss_pred HcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhcCC
Confidence 7653 478999999984 57777777776654
No 232
>PRK13351 elongation factor G; Reviewed
Probab=99.57 E-value=1.1e-14 Score=127.05 Aligned_cols=114 Identities=17% Similarity=0.144 Sum_probs=82.2
Q ss_pred ccceeEEEEecccccceeeeeeeccCCC-------------CCcc-------ccCceeeeeeeEEEECCeEEEEEEEeCC
Q 028595 2 ELLAKLACLFATQVTSFLLYVLSVSGRS-------------SIWD-------YIPTVFDNFSANVVAEGTTVNLGLWDTA 61 (207)
Q Consensus 2 ~~~~ki~iiG~~~~GgKssli~~l~~~~-------------~~~~-------~~~t~~~~~~~~~~~~~~~~~l~i~D~~ 61 (207)
+...+|+++|..++| ||||+++|+... ...+ +..|+.... ..+....+.+++||||
T Consensus 6 ~~irni~iiG~~~~G-KTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~---~~~~~~~~~i~liDtP 81 (687)
T PRK13351 6 MQIRNIGILAHIDAG-KTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAA---TSCDWDNHRINLIDTP 81 (687)
T ss_pred ccccEEEEECCCCCc-chhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccce---EEEEECCEEEEEEECC
Confidence 345799999999999 999999997421 0001 111221111 1222235789999999
Q ss_pred CCccccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCccc
Q 028595 62 GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRE 123 (207)
Q Consensus 62 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~ 123 (207)
|+.++...+..+++.+|++++|+|.++..+.+.. ..| ..+.. .++|+++++||+|+..
T Consensus 82 G~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~-~~~-~~~~~--~~~p~iiviNK~D~~~ 139 (687)
T PRK13351 82 GHIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTE-TVW-RQADR--YGIPRLIFINKMDRVG 139 (687)
T ss_pred CcHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHH-HHH-HHHHh--cCCCEEEEEECCCCCC
Confidence 9999988889999999999999999987766654 334 34433 3799999999999875
No 233
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.57 E-value=8.9e-15 Score=119.85 Aligned_cols=148 Identities=16% Similarity=0.084 Sum_probs=93.1
Q ss_pred ceeEEEEecccccceeeeeeeccCCC-------C-----Ccccc--Cceeeee-eeEEEECCeEEEEEEEeCCCCccccc
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRS-------S-----IWDYI--PTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNR 68 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~-------~-----~~~~~--~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~ 68 (207)
..+|+++|..++| ||||+++|++.. . .+... ..-|.+. ...+..+.....+.+|||||+++|..
T Consensus 12 ~~~i~i~Ghvd~G-KStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~~f~~ 90 (394)
T TIGR00485 12 HVNIGTIGHVDHG-KTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHADYVK 90 (394)
T ss_pred eEEEEEEeecCCC-HHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchHHHHH
Confidence 4679999999999 999999997320 0 00000 0011111 12233444456789999999998865
Q ss_pred cccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEE-EEeeCCCcccCcccccCCCCCcccCHHHHHHHHH
Q 028595 69 LRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVV-LVGTKLDLREDKHYLADHPGLVPVTTAQGEELRK 147 (207)
Q Consensus 69 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~pii-vv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~ 147 (207)
........+|++++|+|+++....+.. .++..+... ++|.+ +++||+|+.+..+.. ....++++.+++
T Consensus 91 ~~~~~~~~~D~~ilVvda~~g~~~qt~--e~l~~~~~~--gi~~iIvvvNK~Dl~~~~~~~-------~~~~~~i~~~l~ 159 (394)
T TIGR00485 91 NMITGAAQMDGAILVVSATDGPMPQTR--EHILLARQV--GVPYIVVFLNKCDMVDDEELL-------ELVEMEVRELLS 159 (394)
T ss_pred HHHHHHhhCCEEEEEEECCCCCcHHHH--HHHHHHHHc--CCCEEEEEEEecccCCHHHHH-------HHHHHHHHHHHH
Confidence 444455678999999999874332222 223333332 66755 689999987543210 012346777888
Q ss_pred HhCC----cEEEEeccCCCC
Q 028595 148 QIGA----SYYIECSSKTQQ 163 (207)
Q Consensus 148 ~~~~----~~~~e~Sa~~~~ 163 (207)
.++. .+++++||.++.
T Consensus 160 ~~~~~~~~~~ii~vSa~~g~ 179 (394)
T TIGR00485 160 EYDFPGDDTPIIRGSALKAL 179 (394)
T ss_pred hcCCCccCccEEECcccccc
Confidence 7763 489999999875
No 234
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.56 E-value=1.3e-14 Score=116.82 Aligned_cols=167 Identities=16% Similarity=0.154 Sum_probs=124.0
Q ss_pred ccceeEEEEecccccceeeeeeeccCCC--CCc-----cccCce------eeee-----eeEEEE-CCeEEEEEEEeCCC
Q 028595 2 ELLAKLACLFATQVTSFLLYVLSVSGRS--SIW-----DYIPTV------FDNF-----SANVVA-EGTTVNLGLWDTAG 62 (207)
Q Consensus 2 ~~~~ki~iiG~~~~GgKssli~~l~~~~--~~~-----~~~~t~------~~~~-----~~~~~~-~~~~~~l~i~D~~G 62 (207)
+...+.+++.--..| ||||..|++... +.. ....+. |.+. ...+.. +|++|.++++||||
T Consensus 7 ~~IRNFsIIAHIDHG-KSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPG 85 (603)
T COG0481 7 KNIRNFSIIAHIDHG-KSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPG 85 (603)
T ss_pred hhccceEEEEEecCC-cchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCC
Confidence 445688999999999 999999987432 111 111111 2121 112222 56899999999999
Q ss_pred CccccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHH
Q 028595 63 QEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQG 142 (207)
Q Consensus 63 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~ 142 (207)
+-+|..-..+.+..|.+.++|.|+++.-..+.+ .+.+..+.. +.-++-|.||+|++..+ ...-.
T Consensus 86 HVDFsYEVSRSLAACEGalLvVDAsQGveAQTl-AN~YlAle~---~LeIiPViNKIDLP~Ad------------pervk 149 (603)
T COG0481 86 HVDFSYEVSRSLAACEGALLVVDASQGVEAQTL-ANVYLALEN---NLEIIPVLNKIDLPAAD------------PERVK 149 (603)
T ss_pred ccceEEEehhhHhhCCCcEEEEECccchHHHHH-HHHHHHHHc---CcEEEEeeecccCCCCC------------HHHHH
Confidence 999998888899999999999999998888877 555555554 78889999999998764 33344
Q ss_pred HHHHHHhCC--cEEEEeccCCCCCHHHHHHHHHHHHhCCCcchhh
Q 028595 143 EELRKQIGA--SYYIECSSKTQQNVKAVFDAAIKVVIKPPQKQKE 185 (207)
Q Consensus 143 ~~~~~~~~~--~~~~e~Sa~~~~~i~~~f~~i~~~~~~~~~~~~~ 185 (207)
+++.+-.|+ ...+.+||++|.||+++++.+++.+..+.-+.+.
T Consensus 150 ~eIe~~iGid~~dav~~SAKtG~gI~~iLe~Iv~~iP~P~g~~~~ 194 (603)
T COG0481 150 QEIEDIIGIDASDAVLVSAKTGIGIEDVLEAIVEKIPPPKGDPDA 194 (603)
T ss_pred HHHHHHhCCCcchheeEecccCCCHHHHHHHHHhhCCCCCCCCCC
Confidence 555555665 3468899999999999999999999988755444
No 235
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.56 E-value=3.6e-14 Score=115.97 Aligned_cols=165 Identities=18% Similarity=0.120 Sum_probs=119.5
Q ss_pred ceeEEEEecccccceeeeeeeccCCC--CCc-----ccc------Cceeeee----eeEEEECCeEEEEEEEeCCCCccc
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRS--SIW-----DYI------PTVFDNF----SANVVAEGTTVNLGLWDTAGQEDY 66 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~--~~~-----~~~------~t~~~~~----~~~~~~~~~~~~l~i~D~~G~~~~ 66 (207)
..++.+|.--..| ||||..+++... ... ... -.-|.+. ...+..+|+.+.++++||||+-+|
T Consensus 60 iRNfsIIAHVDHG-KSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvDF 138 (650)
T KOG0462|consen 60 IRNFSIIAHVDHG-KSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVDF 138 (650)
T ss_pred ccceEEEEEecCC-cchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCcccc
Confidence 4578899999999 999999986321 110 000 0001122 112334578899999999999999
Q ss_pred cccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHH
Q 028595 67 NRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELR 146 (207)
Q Consensus 67 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~ 146 (207)
.....+.+..+|++|+|.|+++.-..+.+ ..++..++. +.-+|.|.||+|++..+.. --..+.+++.
T Consensus 139 s~EVsRslaac~G~lLvVDA~qGvqAQT~-anf~lAfe~---~L~iIpVlNKIDlp~adpe---------~V~~q~~~lF 205 (650)
T KOG0462|consen 139 SGEVSRSLAACDGALLVVDASQGVQAQTV-ANFYLAFEA---GLAIIPVLNKIDLPSADPE---------RVENQLFELF 205 (650)
T ss_pred cceehehhhhcCceEEEEEcCcCchHHHH-HHHHHHHHc---CCeEEEeeeccCCCCCCHH---------HHHHHHHHHh
Confidence 99999999999999999999998888877 555555554 7889999999999876421 0122333333
Q ss_pred HHhCCcEEEEeccCCCCCHHHHHHHHHHHHhCCCcch
Q 028595 147 KQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPPQKQ 183 (207)
Q Consensus 147 ~~~~~~~~~e~Sa~~~~~i~~~f~~i~~~~~~~~~~~ 183 (207)
...+ .+.+.+||++|.|++++++++++.+..+.-..
T Consensus 206 ~~~~-~~~i~vSAK~G~~v~~lL~AII~rVPpP~~~~ 241 (650)
T KOG0462|consen 206 DIPP-AEVIYVSAKTGLNVEELLEAIIRRVPPPKGIR 241 (650)
T ss_pred cCCc-cceEEEEeccCccHHHHHHHHHhhCCCCCCCC
Confidence 3233 37899999999999999999999998876433
No 236
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.56 E-value=1.8e-14 Score=111.90 Aligned_cols=115 Identities=16% Similarity=0.111 Sum_probs=78.9
Q ss_pred eeEEEEecccccceeeeeeeccCCC--CCc---------------cccCce---eeee-eeEEEECCeEEEEEEEeCCCC
Q 028595 5 AKLACLFATQVTSFLLYVLSVSGRS--SIW---------------DYIPTV---FDNF-SANVVAEGTTVNLGLWDTAGQ 63 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~~~--~~~---------------~~~~t~---~~~~-~~~~~~~~~~~~l~i~D~~G~ 63 (207)
.+|+++|..++| ||||+++++... ... ++.+.. +..+ .....+....+.+++|||||+
T Consensus 3 Rni~ivGh~~~G-KTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~ 81 (267)
T cd04169 3 RTFAIISHPDAG-KTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGH 81 (267)
T ss_pred cEEEEEcCCCCC-HHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCc
Confidence 589999999999 999999987421 110 010000 1111 122334455688999999999
Q ss_pred ccccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccC
Q 028595 64 EDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED 124 (207)
Q Consensus 64 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~ 124 (207)
.+|......+++.+|++|+|+|.++...... ..++..... .++|+++++||+|+...
T Consensus 82 ~df~~~~~~~l~~aD~~IlVvda~~g~~~~~--~~i~~~~~~--~~~P~iivvNK~D~~~a 138 (267)
T cd04169 82 EDFSEDTYRTLTAVDSAVMVIDAAKGVEPQT--RKLFEVCRL--RGIPIITFINKLDREGR 138 (267)
T ss_pred hHHHHHHHHHHHHCCEEEEEEECCCCccHHH--HHHHHHHHh--cCCCEEEEEECCccCCC
Confidence 9887767778899999999999987543332 234444433 37899999999998654
No 237
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.55 E-value=1.2e-13 Score=106.14 Aligned_cols=96 Identities=24% Similarity=0.288 Sum_probs=79.4
Q ss_pred ccccccccceecCCcEEEEEEeCCChh-hHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHH
Q 028595 64 EDYNRLRPLSYRGADVFVLAFSLVSRA-SYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQG 142 (207)
Q Consensus 64 ~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~ 142 (207)
+++..+.+.+++++|++++|||++++. ++..+ ..|+..+.. .++|+++|+||+|+.+.+.+ ..+.+
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l-~r~l~~~~~--~~i~~vIV~NK~DL~~~~~~----------~~~~~ 90 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQL-DRFLVVAEA--QNIEPIIVLNKIDLLDDEDM----------EKEQL 90 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHH-HHHHHHHHH--CCCCEEEEEECcccCCCHHH----------HHHHH
Confidence 678889999999999999999999887 78887 889887764 58999999999999755432 33455
Q ss_pred HHHHHHhCCcEEEEeccCCCCCHHHHHHHHHH
Q 028595 143 EELRKQIGASYYIECSSKTQQNVKAVFDAAIK 174 (207)
Q Consensus 143 ~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i~~ 174 (207)
+.+. ..++ +++++||++|.|++++|+.+..
T Consensus 91 ~~~~-~~g~-~v~~~SAktg~gi~eLf~~l~~ 120 (245)
T TIGR00157 91 DIYR-NIGY-QVLMTSSKNQDGLKELIEALQN 120 (245)
T ss_pred HHHH-HCCC-eEEEEecCCchhHHHHHhhhcC
Confidence 5554 4777 8999999999999999998764
No 238
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.54 E-value=4.3e-14 Score=109.86 Aligned_cols=164 Identities=18% Similarity=0.149 Sum_probs=113.8
Q ss_pred ceeEEEEecccccceeeeeeeccCCCC-CccccCceeeeeeeEEEECCeEEEEEEEeCCCCc----cccccccce---ec
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSS-IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQE----DYNRLRPLS---YR 75 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~----~~~~~~~~~---~~ 75 (207)
..-|.+||.|++| |||||+.++..+- ...|.-|+-....-.+.++ ..-.+.+-|+||-- .-..+-..| +.
T Consensus 159 lADVGLVG~PNaG-KSTlls~vS~AkPKIadYpFTTL~PnLGvV~~~-~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIE 236 (369)
T COG0536 159 LADVGLVGLPNAG-KSTLLSAVSAAKPKIADYPFTTLVPNLGVVRVD-GGESFVVADIPGLIEGASEGVGLGLRFLRHIE 236 (369)
T ss_pred ecccccccCCCCc-HHHHHHHHhhcCCcccCCccccccCcccEEEec-CCCcEEEecCcccccccccCCCccHHHHHHHH
Confidence 3457899999999 9999999987763 4556555543333344442 23457899999832 223333333 45
Q ss_pred CCcEEEEEEeCCChhh---HHHHHHHHHHHHhhcC---CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHh
Q 028595 76 GADVFVLAFSLVSRAS---YENVLKKWIPELQHYS---PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI 149 (207)
Q Consensus 76 ~~d~~i~v~d~~~~~s---~~~~~~~~~~~i~~~~---~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 149 (207)
++.+++.|.|++..+. .++. ..+..++..+. .+.|.+||+||+|+....+. .....+.+.+..
T Consensus 237 Rt~vL~hviD~s~~~~~dp~~~~-~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~----------~~~~~~~l~~~~ 305 (369)
T COG0536 237 RTRVLLHVIDLSPIDGRDPIEDY-QTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEE----------LEELKKALAEAL 305 (369)
T ss_pred hhheeEEEEecCcccCCCHHHHH-HHHHHHHHHhhHHhccCceEEEEeccCCCcCHHH----------HHHHHHHHHHhc
Confidence 6899999999996553 5555 66777777776 47999999999997655432 334455555555
Q ss_pred CCcEEEEeccCCCCCHHHHHHHHHHHHhCCC
Q 028595 150 GASYYIECSSKTQQNVKAVFDAAIKVVIKPP 180 (207)
Q Consensus 150 ~~~~~~e~Sa~~~~~i~~~f~~i~~~~~~~~ 180 (207)
+...++.+||.+++|++++...+.+.+....
T Consensus 306 ~~~~~~~ISa~t~~g~~~L~~~~~~~l~~~~ 336 (369)
T COG0536 306 GWEVFYLISALTREGLDELLRALAELLEETK 336 (369)
T ss_pred CCCcceeeehhcccCHHHHHHHHHHHHHHhh
Confidence 5533333999999999999999998887664
No 239
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.54 E-value=2.5e-13 Score=111.28 Aligned_cols=150 Identities=13% Similarity=0.176 Sum_probs=101.3
Q ss_pred EEEEecccccceeeeeeeccCCCCCccccCceeee-eeeEEEEC-CeEEEEEEEeCCCCccccccccceecCCcEEEEEE
Q 028595 7 LACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDN-FSANVVAE-GTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 84 (207)
Q Consensus 7 i~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~-~~~~~~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 84 (207)
|+++|-=..| ||||+..+-..+......--++-. .-.++..+ +..-.+.+.||||++-|..|+..=.+-+|++|+|.
T Consensus 8 VtimGHVDHG-KTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaILVV 86 (509)
T COG0532 8 VTIMGHVDHG-KTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAFTAMRARGASVTDIAILVV 86 (509)
T ss_pred EEEeCcccCC-ccchhhhHhcCccccccCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHHHHHHhcCCccccEEEEEE
Confidence 4556666666 999999998887654322111111 12233333 12346889999999999999988888899999999
Q ss_pred eCCCh---hhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCC--------cE
Q 028595 85 SLVSR---ASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA--------SY 153 (207)
Q Consensus 85 d~~~~---~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--------~~ 153 (207)
++.+. ++.+.+ . .++. .++|++++.||+|.++.+ ......-.+++|+ ..
T Consensus 87 a~dDGv~pQTiEAI--~---hak~--a~vP~iVAiNKiDk~~~n-------------p~~v~~el~~~gl~~E~~gg~v~ 146 (509)
T COG0532 87 AADDGVMPQTIEAI--N---HAKA--AGVPIVVAINKIDKPEAN-------------PDKVKQELQEYGLVPEEWGGDVI 146 (509)
T ss_pred EccCCcchhHHHHH--H---HHHH--CCCCEEEEEecccCCCCC-------------HHHHHHHHHHcCCCHhhcCCceE
Confidence 99984 333332 1 1111 489999999999998543 2222222222332 36
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHh
Q 028595 154 YIECSSKTQQNVKAVFDAAIKVVI 177 (207)
Q Consensus 154 ~~e~Sa~~~~~i~~~f~~i~~~~~ 177 (207)
++++||++|+|+.+++..++-...
T Consensus 147 ~VpvSA~tg~Gi~eLL~~ill~ae 170 (509)
T COG0532 147 FVPVSAKTGEGIDELLELILLLAE 170 (509)
T ss_pred EEEeeccCCCCHHHHHHHHHHHHH
Confidence 899999999999999999875553
No 240
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.54 E-value=4.9e-14 Score=118.73 Aligned_cols=116 Identities=13% Similarity=0.059 Sum_probs=79.6
Q ss_pred cceeEEEEecccccceeeeeeeccC--CCCC---------------ccccCc---eeeee-eeEEEECCeEEEEEEEeCC
Q 028595 3 LLAKLACLFATQVTSFLLYVLSVSG--RSSI---------------WDYIPT---VFDNF-SANVVAEGTTVNLGLWDTA 61 (207)
Q Consensus 3 ~~~ki~iiG~~~~GgKssli~~l~~--~~~~---------------~~~~~t---~~~~~-~~~~~~~~~~~~l~i~D~~ 61 (207)
...+|+++|..++| ||||.++++. +... .++.+. -+..+ .....++...+.+++||||
T Consensus 9 ~~Rni~IiGh~daG-KTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTP 87 (526)
T PRK00741 9 KRRTFAIISHPDAG-KTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTP 87 (526)
T ss_pred cCCEEEEECCCCCC-HHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECC
Confidence 46799999999999 9999999963 2110 000100 01112 1122333445789999999
Q ss_pred CCccccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCccc
Q 028595 62 GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRE 123 (207)
Q Consensus 62 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~ 123 (207)
|+..|......+++.+|++|+|+|.++...... ..++..... .++|+++++||+|+..
T Consensus 88 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t--~~l~~~~~~--~~iPiiv~iNK~D~~~ 145 (526)
T PRK00741 88 GHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQT--RKLMEVCRL--RDTPIFTFINKLDRDG 145 (526)
T ss_pred CchhhHHHHHHHHHHCCEEEEEEecCCCCCHHH--HHHHHHHHh--cCCCEEEEEECCcccc
Confidence 999988777788899999999999987543332 334444433 3899999999999864
No 241
>CHL00071 tufA elongation factor Tu
Probab=99.51 E-value=5.5e-14 Score=115.68 Aligned_cols=149 Identities=16% Similarity=0.085 Sum_probs=94.7
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCC------ccccCc--------eeeee-eeEEEECCeEEEEEEEeCCCCccccc
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSI------WDYIPT--------VFDNF-SANVVAEGTTVNLGLWDTAGQEDYNR 68 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~------~~~~~t--------~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~ 68 (207)
..+|+++|..++| ||||+++|++..-. ..+... -|.+. ...........++.+.||||+..|..
T Consensus 12 ~~~i~i~Gh~d~G-KSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~~~~~ 90 (409)
T CHL00071 12 HVNIGTIGHVDHG-KTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADYVK 90 (409)
T ss_pred eEEEEEECCCCCC-HHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChHHHHH
Confidence 4679999999999 99999999854110 000000 11111 11122233345678999999987766
Q ss_pred cccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCc-EEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHH
Q 028595 69 LRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVP-VVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRK 147 (207)
Q Consensus 69 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~p-iivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~ 147 (207)
.....+..+|++++|+|+.....-+. ..++..+... ++| ++++.||+|+.+..+.. ....+++..+.+
T Consensus 91 ~~~~~~~~~D~~ilVvda~~g~~~qt--~~~~~~~~~~--g~~~iIvvvNK~D~~~~~~~~-------~~~~~~l~~~l~ 159 (409)
T CHL00071 91 NMITGAAQMDGAILVVSAADGPMPQT--KEHILLAKQV--GVPNIVVFLNKEDQVDDEELL-------ELVELEVRELLS 159 (409)
T ss_pred HHHHHHHhCCEEEEEEECCCCCcHHH--HHHHHHHHHc--CCCEEEEEEEccCCCCHHHHH-------HHHHHHHHHHHH
Confidence 55566778999999999986533332 2333344332 678 77899999997543210 012346667777
Q ss_pred HhCC----cEEEEeccCCCCC
Q 028595 148 QIGA----SYYIECSSKTQQN 164 (207)
Q Consensus 148 ~~~~----~~~~e~Sa~~~~~ 164 (207)
..++ .+++.+||.+|.|
T Consensus 160 ~~~~~~~~~~ii~~Sa~~g~n 180 (409)
T CHL00071 160 KYDFPGDDIPIVSGSALLALE 180 (409)
T ss_pred HhCCCCCcceEEEcchhhccc
Confidence 6653 4899999999864
No 242
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.50 E-value=1.5e-14 Score=96.49 Aligned_cols=139 Identities=21% Similarity=0.125 Sum_probs=106.4
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccc----cceecCCcE
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLR----PLSYRGADV 79 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~----~~~~~~~d~ 79 (207)
+.|++++|..++| ||||.+++-+.. ..|..|+..+|... -.+||||.-.....+ -....++|+
T Consensus 1 MKri~~vG~~gcG-KTtL~q~L~G~~--~lykKTQAve~~d~----------~~IDTPGEy~~~~~~Y~aL~tt~~dadv 67 (148)
T COG4917 1 MKRIAFVGQVGCG-KTTLFQSLYGND--TLYKKTQAVEFNDK----------GDIDTPGEYFEHPRWYHALITTLQDADV 67 (148)
T ss_pred CceeEEecccccC-chhHHHHhhcch--hhhcccceeeccCc----------cccCCchhhhhhhHHHHHHHHHhhccce
Confidence 3588999999999 999999998775 34556665544221 147999954333332 334568999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEecc
Q 028595 80 FVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSS 159 (207)
Q Consensus 80 ~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa 159 (207)
+++|-++++++|.... .+.... ..|+|-+.+|.|+.++. ..+..++|..+-|..+.|++|+
T Consensus 68 i~~v~~and~~s~f~p--~f~~~~-----~k~vIgvVTK~DLaed~------------dI~~~~~~L~eaGa~~IF~~s~ 128 (148)
T COG4917 68 IIYVHAANDPESRFPP--GFLDIG-----VKKVIGVVTKADLAEDA------------DISLVKRWLREAGAEPIFETSA 128 (148)
T ss_pred eeeeecccCccccCCc--cccccc-----ccceEEEEecccccchH------------hHHHHHHHHHHcCCcceEEEec
Confidence 9999999998877654 333332 46699999999998754 6788999999999889999999
Q ss_pred CCCCCHHHHHHHHHH
Q 028595 160 KTQQNVKAVFDAAIK 174 (207)
Q Consensus 160 ~~~~~i~~~f~~i~~ 174 (207)
.++.|+++++..+..
T Consensus 129 ~d~~gv~~l~~~L~~ 143 (148)
T COG4917 129 VDNQGVEELVDYLAS 143 (148)
T ss_pred cCcccHHHHHHHHHh
Confidence 999999999998864
No 243
>COG2262 HflX GTPases [General function prediction only]
Probab=99.49 E-value=3.9e-13 Score=107.05 Aligned_cols=157 Identities=17% Similarity=0.109 Sum_probs=109.3
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCC-ccccCceeeeeeeEEEECCeEEEEEEEeCCCCccc--ccccc------cee
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSI-WDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY--NRLRP------LSY 74 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~--~~~~~------~~~ 74 (207)
...|.++|-.|+| ||||+|++++.... .+...++-+.....+.+.+ ...+.+-||.|.-+- ..+.. .-.
T Consensus 192 ~p~vaLvGYTNAG-KSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~-g~~vlLtDTVGFI~~LP~~LV~AFksTLEE~ 269 (411)
T COG2262 192 IPLVALVGYTNAG-KSTLFNALTGADVYVADQLFATLDPTTRRIELGD-GRKVLLTDTVGFIRDLPHPLVEAFKSTLEEV 269 (411)
T ss_pred CCeEEEEeecccc-HHHHHHHHhccCeeccccccccccCceeEEEeCC-CceEEEecCccCcccCChHHHHHHHHHHHHh
Confidence 3568999999999 99999999976543 3333333344455556654 355789999994322 11222 224
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcE
Q 028595 75 RGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASY 153 (207)
Q Consensus 75 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 153 (207)
..+|+++.|.|++++.....+ ..-...+.+.. .++|+++|.||+|+..+.. .......... .
T Consensus 270 ~~aDlllhVVDaSdp~~~~~~-~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~---------------~~~~~~~~~~-~ 332 (411)
T COG2262 270 KEADLLLHVVDASDPEILEKL-EAVEDVLAEIGADEIPIILVLNKIDLLEDEE---------------ILAELERGSP-N 332 (411)
T ss_pred hcCCEEEEEeecCChhHHHHH-HHHHHHHHHcCCCCCCEEEEEecccccCchh---------------hhhhhhhcCC-C
Confidence 569999999999999777777 56666666654 5799999999999754431 1122222221 5
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHhCC
Q 028595 154 YIECSSKTQQNVKAVFDAAIKVVIKP 179 (207)
Q Consensus 154 ~~e~Sa~~~~~i~~~f~~i~~~~~~~ 179 (207)
.+.+||++|.|++.+.+.|...+...
T Consensus 333 ~v~iSA~~~~gl~~L~~~i~~~l~~~ 358 (411)
T COG2262 333 PVFISAKTGEGLDLLRERIIELLSGL 358 (411)
T ss_pred eEEEEeccCcCHHHHHHHHHHHhhhc
Confidence 78999999999999999999988743
No 244
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.48 E-value=1.3e-14 Score=105.22 Aligned_cols=118 Identities=11% Similarity=0.045 Sum_probs=72.6
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEE-CCeEEEEEEEeCCCCccccccccc---eecCCcE
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVA-EGTTVNLGLWDTAGQEDYNRLRPL---SYRGADV 79 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~l~i~D~~G~~~~~~~~~~---~~~~~d~ 79 (207)
..-|+++|..++| ||+|..+|..+...+.+.+. ..... +.+ +...-.+.+.|+||+++.+..... +..++.+
T Consensus 3 ~~~vlL~Gps~SG-KTaLf~~L~~~~~~~T~tS~-e~n~~--~~~~~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~ 78 (181)
T PF09439_consen 3 RPTVLLVGPSGSG-KTALFSQLVNGKTVPTVTSM-ENNIA--YNVNNSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKG 78 (181)
T ss_dssp --EEEEE-STTSS-HHHHHHHHHHSS---B---S-SEEEE--CCGSSTCGTCECEEEETT-HCCCHHHHHHHHHHGGEEE
T ss_pred CceEEEEcCCCCC-HHHHHHHHhcCCcCCeeccc-cCCce--EEeecCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCE
Confidence 4468999999999 99999999988543322211 11111 111 223346789999999998864433 4778999
Q ss_pred EEEEEeCCC-hhhHHHHHHHHHHHHhhcC---CCCcEEEEeeCCCcccCc
Q 028595 80 FVLAFSLVS-RASYENVLKKWIPELQHYS---PGVPVVLVGTKLDLREDK 125 (207)
Q Consensus 80 ~i~v~d~~~-~~s~~~~~~~~~~~i~~~~---~~~piivv~nK~D~~~~~ 125 (207)
+|||.|.+. ...+.++.+.++..+.... ..+|++|++||.|+....
T Consensus 79 IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~ 128 (181)
T PF09439_consen 79 IIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAK 128 (181)
T ss_dssp EEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT--
T ss_pred EEEEEeCccchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccC
Confidence 999999974 4455555455555554322 579999999999987643
No 245
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.48 E-value=1.2e-13 Score=107.67 Aligned_cols=114 Identities=18% Similarity=0.170 Sum_probs=76.4
Q ss_pred eEEEEecccccceeeeeeeccCCCCCcccc------Cce----------eeee-eeEEEECCeEEEEEEEeCCCCccccc
Q 028595 6 KLACLFATQVTSFLLYVLSVSGRSSIWDYI------PTV----------FDNF-SANVVAEGTTVNLGLWDTAGQEDYNR 68 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~~~~~~~~~------~t~----------~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~ 68 (207)
+|+++|..++| ||||+++++...-..... .+. +... .....+....+.+.+|||||+..+..
T Consensus 1 ni~ivG~~gsG-KStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~~f~~ 79 (268)
T cd04170 1 NIALVGHSGSG-KTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFVG 79 (268)
T ss_pred CEEEECCCCCC-HHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHHHHHH
Confidence 58999999999 999999987432110000 010 0000 11111222346789999999988777
Q ss_pred cccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccC
Q 028595 69 LRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED 124 (207)
Q Consensus 69 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~ 124 (207)
.+..++..+|++++|+|.++....... ..| ..+.. .++|.++++||.|....
T Consensus 80 ~~~~~l~~aD~~i~Vvd~~~g~~~~~~-~~~-~~~~~--~~~p~iivvNK~D~~~~ 131 (268)
T cd04170 80 ETRAALRAADAALVVVSAQSGVEVGTE-KLW-EFADE--AGIPRIIFINKMDRERA 131 (268)
T ss_pred HHHHHHHHCCEEEEEEeCCCCCCHHHH-HHH-HHHHH--cCCCEEEEEECCccCCC
Confidence 778889999999999999987655443 233 33333 37899999999998754
No 246
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.47 E-value=4.6e-13 Score=112.89 Aligned_cols=116 Identities=13% Similarity=0.057 Sum_probs=79.2
Q ss_pred cceeEEEEecccccceeeeeeeccC--CCCCc---------------cccC---ceeeee-eeEEEECCeEEEEEEEeCC
Q 028595 3 LLAKLACLFATQVTSFLLYVLSVSG--RSSIW---------------DYIP---TVFDNF-SANVVAEGTTVNLGLWDTA 61 (207)
Q Consensus 3 ~~~ki~iiG~~~~GgKssli~~l~~--~~~~~---------------~~~~---t~~~~~-~~~~~~~~~~~~l~i~D~~ 61 (207)
...+|+++|..++| ||||+++++. +.... ++.+ .-+.++ .....++...+.+++||||
T Consensus 10 ~~RniaiiGh~~aG-KTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP 88 (527)
T TIGR00503 10 KRRTFAIISHPDAG-KTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP 88 (527)
T ss_pred cCCEEEEEcCCCCC-HHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence 46799999999999 9999999852 21110 0000 012222 2223445556889999999
Q ss_pred CCccccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCccc
Q 028595 62 GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRE 123 (207)
Q Consensus 62 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~ 123 (207)
|+..|......++..+|++|+|+|.++..... . ..++..... .++|+++++||+|+..
T Consensus 89 G~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~-t-~~l~~~~~~--~~~PiivviNKiD~~~ 146 (527)
T TIGR00503 89 GHEDFSEDTYRTLTAVDNCLMVIDAAKGVETR-T-RKLMEVTRL--RDTPIFTFMNKLDRDI 146 (527)
T ss_pred ChhhHHHHHHHHHHhCCEEEEEEECCCCCCHH-H-HHHHHHHHh--cCCCEEEEEECccccC
Confidence 99988776777889999999999998742222 1 344444433 3789999999999853
No 247
>PRK00049 elongation factor Tu; Reviewed
Probab=99.46 E-value=3.5e-13 Score=110.42 Aligned_cols=162 Identities=15% Similarity=0.123 Sum_probs=100.9
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCC------ccc-----cC---ceeeee-eeEEEECCeEEEEEEEeCCCCccccc
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSI------WDY-----IP---TVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNR 68 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~------~~~-----~~---t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~ 68 (207)
..+|+++|..++| ||||+++|++.... ..+ .+ .-|.+. ............+.+.||||+.+|..
T Consensus 12 ~~ni~iiGhvd~G-KSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~~f~~ 90 (396)
T PRK00049 12 HVNVGTIGHVDHG-KTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADYVK 90 (396)
T ss_pred EEEEEEEeECCCC-HHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHHHHHH
Confidence 4679999999999 99999999863100 000 00 011111 11222333345678999999988766
Q ss_pred cccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEE-EEeeCCCcccCcccccCCCCCcccCHHHHHHHHH
Q 028595 69 LRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVV-LVGTKLDLREDKHYLADHPGLVPVTTAQGEELRK 147 (207)
Q Consensus 69 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~pii-vv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~ 147 (207)
.....+..+|++++|+|..+....+. ..++..+... ++|.+ ++.||+|+.+..+. ......+...+..
T Consensus 91 ~~~~~~~~aD~~llVVDa~~g~~~qt--~~~~~~~~~~--g~p~iiVvvNK~D~~~~~~~-------~~~~~~~i~~~l~ 159 (396)
T PRK00049 91 NMITGAAQMDGAILVVSAADGPMPQT--REHILLARQV--GVPYIVVFLNKCDMVDDEEL-------LELVEMEVRELLS 159 (396)
T ss_pred HHHhhhccCCEEEEEEECCCCCchHH--HHHHHHHHHc--CCCEEEEEEeecCCcchHHH-------HHHHHHHHHHHHH
Confidence 55566788999999999987533332 2344444432 68875 68999999753221 0002234555655
Q ss_pred HhCC----cEEEEeccCCCC----------CHHHHHHHHHHHHh
Q 028595 148 QIGA----SYYIECSSKTQQ----------NVKAVFDAAIKVVI 177 (207)
Q Consensus 148 ~~~~----~~~~e~Sa~~~~----------~i~~~f~~i~~~~~ 177 (207)
..++ .+++.+||.++. ++..+++.|...+.
T Consensus 160 ~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~~ 203 (396)
T PRK00049 160 KYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSYIP 203 (396)
T ss_pred hcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhcCC
Confidence 5543 478999999875 45667766666543
No 248
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.45 E-value=1.4e-13 Score=107.09 Aligned_cols=114 Identities=15% Similarity=0.055 Sum_probs=75.7
Q ss_pred eEEEEecccccceeeeeeeccCC--CCCc-----------cccCc---eeeee-eeEEEECCeEEEEEEEeCCCCccccc
Q 028595 6 KLACLFATQVTSFLLYVLSVSGR--SSIW-----------DYIPT---VFDNF-SANVVAEGTTVNLGLWDTAGQEDYNR 68 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~~--~~~~-----------~~~~t---~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~ 68 (207)
+|+++|..++| ||||+++++.. .... ++.+. -+.+. .....+.-...++.+|||||+..+..
T Consensus 1 nv~ivGh~~~G-KTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~df~~ 79 (270)
T cd01886 1 NIGIIAHIDAG-KTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFTI 79 (270)
T ss_pred CEEEEcCCCCC-HHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHHHHH
Confidence 58999999999 99999999631 1100 00110 01111 11111112346789999999988888
Q ss_pred cccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccC
Q 028595 69 LRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED 124 (207)
Q Consensus 69 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~ 124 (207)
.+..+++.+|++++|.|..+...... ..++..+.. .++|++++.||+|+.+.
T Consensus 80 ~~~~~l~~aD~ailVVDa~~g~~~~t--~~~~~~~~~--~~~p~ivviNK~D~~~a 131 (270)
T cd01886 80 EVERSLRVLDGAVAVFDAVAGVEPQT--ETVWRQADR--YNVPRIAFVNKMDRTGA 131 (270)
T ss_pred HHHHHHHHcCEEEEEEECCCCCCHHH--HHHHHHHHH--cCCCEEEEEECCCCCCC
Confidence 88889999999999999987543333 233344433 27899999999998753
No 249
>PLN03126 Elongation factor Tu; Provisional
Probab=99.44 E-value=3.5e-13 Score=112.29 Aligned_cols=149 Identities=16% Similarity=0.065 Sum_probs=94.2
Q ss_pred ceeEEEEecccccceeeeeeeccCCC------CCccc--------cCceeeee-eeEEEECCeEEEEEEEeCCCCccccc
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRS------SIWDY--------IPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNR 68 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~------~~~~~--------~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~ 68 (207)
..+|+++|..++| ||||+++|+... ....+ ....+.+. ............+.++|+||+++|..
T Consensus 81 ~~ni~iiGhvd~G-KSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~~f~~ 159 (478)
T PLN03126 81 HVNIGTIGHVDHG-KTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVK 159 (478)
T ss_pred eeEEEEECCCCCC-HHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHHHHHH
Confidence 4579999999999 999999998521 11110 00011111 11112222345778999999998866
Q ss_pred cccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCc-EEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHH
Q 028595 69 LRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVP-VVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRK 147 (207)
Q Consensus 69 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~p-iivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~ 147 (207)
.....+..+|++++|+|..+....+. ..++..+... ++| ++++.||+|+.+..+. .....+++..+..
T Consensus 160 ~~~~g~~~aD~ailVVda~~G~~~qt--~e~~~~~~~~--gi~~iIvvvNK~Dl~~~~~~-------~~~i~~~i~~~l~ 228 (478)
T PLN03126 160 NMITGAAQMDGAILVVSGADGPMPQT--KEHILLAKQV--GVPNMVVFLNKQDQVDDEEL-------LELVELEVRELLS 228 (478)
T ss_pred HHHHHHhhCCEEEEEEECCCCCcHHH--HHHHHHHHHc--CCCeEEEEEecccccCHHHH-------HHHHHHHHHHHHH
Confidence 55566678999999999987544433 2334444333 677 7889999999753321 0012245666666
Q ss_pred HhCC----cEEEEeccCCCCC
Q 028595 148 QIGA----SYYIECSSKTQQN 164 (207)
Q Consensus 148 ~~~~----~~~~e~Sa~~~~~ 164 (207)
..++ .+++.+||.++.+
T Consensus 229 ~~g~~~~~~~~vp~Sa~~g~n 249 (478)
T PLN03126 229 SYEFPGDDIPIISGSALLALE 249 (478)
T ss_pred hcCCCcCcceEEEEEcccccc
Confidence 6542 3789999998754
No 250
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.44 E-value=4.4e-13 Score=110.20 Aligned_cols=153 Identities=16% Similarity=0.013 Sum_probs=92.2
Q ss_pred eeEEEEecccccceeeeeeeccCCC--CCcc-----------ccCc--------e----------eeee-eeEEEECCeE
Q 028595 5 AKLACLFATQVTSFLLYVLSVSGRS--SIWD-----------YIPT--------V----------FDNF-SANVVAEGTT 52 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~~~--~~~~-----------~~~t--------~----------~~~~-~~~~~~~~~~ 52 (207)
.+|+++|..++| ||||+.+|+... .... .-.+ . |.+. ..........
T Consensus 1 ~~~~~vGhvd~G-KSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~ 79 (406)
T TIGR02034 1 LRFLTCGSVDDG-KSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDK 79 (406)
T ss_pred CeEEEECCCCCC-chhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCC
Confidence 479999999999 999999996332 1110 0000 0 0001 0111122234
Q ss_pred EEEEEEeCCCCccccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCC
Q 028595 53 VNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHP 132 (207)
Q Consensus 53 ~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~ 132 (207)
..+.+|||||+++|.......+..+|++++|+|+......+.. ..+..+... ...+++++.||+|+.+....
T Consensus 80 ~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~--~~~~~~~~~-~~~~iivviNK~D~~~~~~~----- 151 (406)
T TIGR02034 80 RKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTR--RHSYIASLL-GIRHVVLAVNKMDLVDYDEE----- 151 (406)
T ss_pred eEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccH--HHHHHHHHc-CCCcEEEEEEecccccchHH-----
Confidence 5788999999998865555567889999999999865433322 112222222 13468999999998643210
Q ss_pred CCcccCHHHHHHHHHHhCC--cEEEEeccCCCCCHHH
Q 028595 133 GLVPVTTAQGEELRKQIGA--SYYIECSSKTQQNVKA 167 (207)
Q Consensus 133 ~~~~v~~~~~~~~~~~~~~--~~~~e~Sa~~~~~i~~ 167 (207)
......++...+.+.++. .+++++||.+|+|+.+
T Consensus 152 -~~~~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~ 187 (406)
T TIGR02034 152 -VFENIKKDYLAFAEQLGFRDVTFIPLSALKGDNVVS 187 (406)
T ss_pred -HHHHHHHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence 000012344445555554 3699999999999986
No 251
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.44 E-value=1.1e-12 Score=107.08 Aligned_cols=82 Identities=16% Similarity=0.143 Sum_probs=56.9
Q ss_pred eeEEEEecccccceeeeeeeccCCCCCc-cc-----cCceeeeeee-EE---------------EECC-eEEEEEEEeCC
Q 028595 5 AKLACLFATQVTSFLLYVLSVSGRSSIW-DY-----IPTVFDNFSA-NV---------------VAEG-TTVNLGLWDTA 61 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~~~~~~-~~-----~~t~~~~~~~-~~---------------~~~~-~~~~l~i~D~~ 61 (207)
.||+++|.+++| ||||+|+|++..... .| .|+.|..+.. .+ ..++ ....+++||+|
T Consensus 2 ~kigivG~pnvG-KSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~a 80 (396)
T PRK09602 2 ITIGLVGKPNVG-KSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVA 80 (396)
T ss_pred cEEEEECCCCCC-HHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcC
Confidence 589999999999 999999999887542 33 2333322210 00 0122 24779999999
Q ss_pred CC----ccccccccce---ecCCcEEEEEEeCC
Q 028595 62 GQ----EDYNRLRPLS---YRGADVFVLAFSLV 87 (207)
Q Consensus 62 G~----~~~~~~~~~~---~~~~d~~i~v~d~~ 87 (207)
|. +....+...+ ++++|++++|+|..
T Consensus 81 Gl~~ga~~g~glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 81 GLVPGAHEGRGLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred CcCCCccchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence 93 4445555566 78999999999997
No 252
>PLN03127 Elongation factor Tu; Provisional
Probab=99.44 E-value=9.1e-13 Score=109.19 Aligned_cols=163 Identities=17% Similarity=0.118 Sum_probs=97.9
Q ss_pred ceeEEEEecccccceeeeeeeccCC------CCCcc----------ccCceeeeeeeEEEECCeEEEEEEEeCCCCcccc
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGR------SSIWD----------YIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYN 67 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~------~~~~~----------~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~ 67 (207)
..+|+++|..++| ||||+++|.+. ..... ..+.++.+ ...........++.+.||||+++|-
T Consensus 61 ~~ni~iiGhvd~G-KSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~-~~~~~~~~~~~~i~~iDtPGh~~f~ 138 (447)
T PLN03127 61 HVNVGTIGHVDHG-KTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIA-TAHVEYETAKRHYAHVDCPGHADYV 138 (447)
T ss_pred eEEEEEECcCCCC-HHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceee-eeEEEEcCCCeEEEEEECCCccchH
Confidence 4579999999999 99999999622 10000 00111111 1122333344678899999998775
Q ss_pred ccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCc-EEEEeeCCCcccCcccccCCCCCcccCHHHHHHHH
Q 028595 68 RLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVP-VVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELR 146 (207)
Q Consensus 68 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~p-iivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~ 146 (207)
......+..+|++++|.|.++...-+. ...+..+... ++| ++++.||+|+.+..+.. ....++.+++.
T Consensus 139 ~~~~~g~~~aD~allVVda~~g~~~qt--~e~l~~~~~~--gip~iIvviNKiDlv~~~~~~-------~~i~~~i~~~l 207 (447)
T PLN03127 139 KNMITGAAQMDGGILVVSAPDGPMPQT--KEHILLARQV--GVPSLVVFLNKVDVVDDEELL-------ELVEMELRELL 207 (447)
T ss_pred HHHHHHHhhCCEEEEEEECCCCCchhH--HHHHHHHHHc--CCCeEEEEEEeeccCCHHHHH-------HHHHHHHHHHH
Confidence 444444567999999999986533332 2333344332 688 57899999997533210 00112444555
Q ss_pred HHhCC----cEEEEeccC---CCCC-------HHHHHHHHHHHHhCC
Q 028595 147 KQIGA----SYYIECSSK---TQQN-------VKAVFDAAIKVVIKP 179 (207)
Q Consensus 147 ~~~~~----~~~~e~Sa~---~~~~-------i~~~f~~i~~~~~~~ 179 (207)
..+++ .+++.+||. ++.| +.++++.+...+..+
T Consensus 208 ~~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp~p 254 (447)
T PLN03127 208 SFYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYIPEP 254 (447)
T ss_pred HHhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhCCCC
Confidence 54433 378888776 4555 677777777665433
No 253
>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]
Probab=99.44 E-value=8e-13 Score=108.15 Aligned_cols=160 Identities=23% Similarity=0.296 Sum_probs=127.6
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEE
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA 83 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v 83 (207)
..|+.|+|..++| ||+|+++++.+.|.++..|. +..|.+.+.+++....+.+.|.+|... .+|...+|++|||
T Consensus 30 elk~givg~~~sg-ktalvhr~ltgty~~~e~~e-~~~~kkE~vv~gqs~lLlirdeg~~~~-----aQft~wvdavIfv 102 (749)
T KOG0705|consen 30 ELKLGIVGTSQSG-KTALVHRYLTGTYTQDESPE-GGRFKKEVVVDGQSHLLLIRDEGGHPD-----AQFCQWVDAVVFV 102 (749)
T ss_pred hhheeeeecccCC-ceeeeeeeccceeccccCCc-CccceeeEEeeccceEeeeecccCCch-----hhhhhhccceEEE
Confidence 4689999999999 99999999999987765544 667899999999999999999988433 5677889999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcC--CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCC
Q 028595 84 FSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT 161 (207)
Q Consensus 84 ~d~~~~~s~~~~~~~~~~~i~~~~--~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 161 (207)
|.+.+.++++.+ ..+.-.+..+. ..+|+++++++.-..... ++.+....+..++..+....||++++.+
T Consensus 103 f~~~d~~s~q~v-~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~--------~rv~~da~~r~l~~~~krcsy~et~aty 173 (749)
T KOG0705|consen 103 FSVEDEQSFQAV-QALAHEMSSYRNISDLPLILVGTQDHISAKR--------PRVITDDRARQLSAQMKRCSYYETCATY 173 (749)
T ss_pred EEeccccCHHHH-HHHHhhcccccccccchHHhhcCcchhhccc--------ccccchHHHHHHHHhcCccceeecchhh
Confidence 999999999998 55554554333 578999999876554332 2234666777777766555899999999
Q ss_pred CCCHHHHHHHHHHHHhCC
Q 028595 162 QQNVKAVFDAAIKVVIKP 179 (207)
Q Consensus 162 ~~~i~~~f~~i~~~~~~~ 179 (207)
|.+++..|+.+..+++..
T Consensus 174 Glnv~rvf~~~~~k~i~~ 191 (749)
T KOG0705|consen 174 GLNVERVFQEVAQKIVQL 191 (749)
T ss_pred hhhHHHHHHHHHHHHHHH
Confidence 999999999999887654
No 254
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.43 E-value=8e-13 Score=102.44 Aligned_cols=156 Identities=17% Similarity=0.171 Sum_probs=102.8
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCC-ccccCceeeeeeeEEEE---CCeEEEEEEEeCCCCc-cc-ccccc------
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSI-WDYIPTVFDNFSANVVA---EGTTVNLGLWDTAGQE-DY-NRLRP------ 71 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~---~~~~~~l~i~D~~G~~-~~-~~~~~------ 71 (207)
..-|++.|.+||| ||||++.+++.+.. ..|.-|+ +.+.+ +.....++++||||-- +- ..+.+
T Consensus 168 ~pTivVaG~PNVG-KSSlv~~lT~AkpEvA~YPFTT-----K~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi 241 (346)
T COG1084 168 LPTIVVAGYPNVG-KSSLVRKLTTAKPEVAPYPFTT-----KGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQAI 241 (346)
T ss_pred CCeEEEecCCCCc-HHHHHHHHhcCCCccCCCCccc-----cceeEeeeecCCceEEEecCCcccCCChHHhcHHHHHHH
Confidence 3568999999999 99999999988742 3443332 22222 2234678999999921 11 11111
Q ss_pred ceec-CCcEEEEEEeCCCh--hhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHH
Q 028595 72 LSYR-GADVFVLAFSLVSR--ASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ 148 (207)
Q Consensus 72 ~~~~-~~d~~i~v~d~~~~--~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 148 (207)
..++ -+++++|++|.+.. -+.+.- ..++..+..... .|+++|.||+|..+.. ..+++......
T Consensus 242 ~AL~hl~~~IlF~~D~Se~cgy~lE~Q-~~L~~eIk~~f~-~p~v~V~nK~D~~~~e------------~~~~~~~~~~~ 307 (346)
T COG1084 242 LALRHLAGVILFLFDPSETCGYSLEEQ-ISLLEEIKELFK-APIVVVINKIDIADEE------------KLEEIEASVLE 307 (346)
T ss_pred HHHHHhcCeEEEEEcCccccCCCHHHH-HHHHHHHHHhcC-CCeEEEEecccccchh------------HHHHHHHHHHh
Confidence 1112 26899999998864 333443 344555555444 8999999999987554 34555555666
Q ss_pred hCCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 028595 149 IGASYYIECSSKTQQNVKAVFDAAIKVVIKP 179 (207)
Q Consensus 149 ~~~~~~~e~Sa~~~~~i~~~f~~i~~~~~~~ 179 (207)
-+......+++..+.+++.+-..+.....++
T Consensus 308 ~~~~~~~~~~~~~~~~~d~~~~~v~~~a~~~ 338 (346)
T COG1084 308 EGGEEPLKISATKGCGLDKLREEVRKTALEP 338 (346)
T ss_pred hccccccceeeeehhhHHHHHHHHHHHhhch
Confidence 6664577899999999998888877765443
No 255
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.43 E-value=1.5e-12 Score=107.25 Aligned_cols=161 Identities=21% Similarity=0.188 Sum_probs=124.8
Q ss_pred eeEEEEecccccceeeeeeeccCCCCCccccCceeeeeee-EEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEE
Q 028595 5 AKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSA-NVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA 83 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v 83 (207)
+.-.++|..++| ||.+++++.++.+...+..+....+.. .+.+.|+...+.+.|.+-. ....+...- ..+|+++++
T Consensus 426 f~C~V~G~k~~G-Ks~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~-~~~~l~~ke-~~cDv~~~~ 502 (625)
T KOG1707|consen 426 FQCFVVGPKNCG-KSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGED-DQDFLTSKE-AACDVACLV 502 (625)
T ss_pred eeEEEEcCCcCc-hHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCcc-ccccccCcc-ceeeeEEEe
Confidence 345688999999 999999999999888777787777754 5666788888999998765 333222222 679999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCCCC
Q 028595 84 FSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ 163 (207)
Q Consensus 84 ~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~ 163 (207)
||.+++.++..+ ...++..... ...|+++|++|+|+.+..+. ...+..++++++++.+.+.+|..+.-
T Consensus 503 YDsS~p~sf~~~-a~v~~~~~~~-~~~Pc~~va~K~dlDe~~Q~----------~~iqpde~~~~~~i~~P~~~S~~~~~ 570 (625)
T KOG1707|consen 503 YDSSNPRSFEYL-AEVYNKYFDL-YKIPCLMVATKADLDEVPQR----------YSIQPDEFCRQLGLPPPIHISSKTLS 570 (625)
T ss_pred cccCCchHHHHH-HHHHHHhhhc-cCCceEEEeeccccchhhhc----------cCCChHHHHHhcCCCCCeeeccCCCC
Confidence 999999999988 3333333222 58999999999999887654 33334899999999888888888644
Q ss_pred CHHHHHHHHHHHHhCCCc
Q 028595 164 NVKAVFDAAIKVVIKPPQ 181 (207)
Q Consensus 164 ~i~~~f~~i~~~~~~~~~ 181 (207)
+ .++|..|+..+..+..
T Consensus 571 s-~~lf~kL~~~A~~Ph~ 587 (625)
T KOG1707|consen 571 S-NELFIKLATMAQYPHI 587 (625)
T ss_pred C-chHHHHHHHhhhCCCc
Confidence 4 9999999999988763
No 256
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=99.43 E-value=5.4e-14 Score=96.68 Aligned_cols=113 Identities=20% Similarity=0.197 Sum_probs=81.4
Q ss_pred eeEEEEecccccceeeeeeeccCCCCCcccc-CceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEE
Q 028595 5 AKLACLFATQVTSFLLYVLSVSGRSSIWDYI-PTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA 83 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v 83 (207)
+|++++|+.++| ||+|+.++..+.+...+. +|++ +......+.+.++.+++|
T Consensus 1 ~kvv~~G~~gvG-Kt~l~~~~~~~~~~~~~~~~t~~--------------------------~~~~~~~~~~s~~~~~~v 53 (124)
T smart00010 1 FKVVGIGDSGVG-KVGKSARFVQFPFDYVPTVFTIG--------------------------IDVYDPTSYESFDVVLQC 53 (124)
T ss_pred CEEEEECCCChh-HHHHHHHHhcCCccccCceehhh--------------------------hhhccccccCCCCEEEEE
Confidence 489999999999 999999998777654443 4443 333345567788999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCCC
Q 028595 84 FSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQ 162 (207)
Q Consensus 84 ~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~ 162 (207)
|+.++.+++..+ |...+...+ .+.|.++++||.|+.+.... ..+++. .|+++|++++
T Consensus 54 ~~~~~~~s~~~~---~~~~i~~~~k~dl~~~~~~nk~dl~~~~~~----------~~~~~~---------~~~~~s~~~~ 111 (124)
T smart00010 54 WRVDDRDSADNK---NVPEVLVGNKSDLPILVGGNRDVLEEERQV----------ATEEGL---------EFAETSAKTP 111 (124)
T ss_pred EEccCHHHHHHH---hHHHHHhcCCCCCcEEEEeechhhHhhCcC----------CHHHHH---------HHHHHhCCCc
Confidence 999999998764 655555443 47899999999998443221 333232 4567888888
Q ss_pred CCHH
Q 028595 163 QNVK 166 (207)
Q Consensus 163 ~~i~ 166 (207)
.|+.
T Consensus 112 ~~~~ 115 (124)
T smart00010 112 EEGE 115 (124)
T ss_pred chhh
Confidence 8874
No 257
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.43 E-value=4.1e-12 Score=98.34 Aligned_cols=152 Identities=18% Similarity=0.150 Sum_probs=102.8
Q ss_pred eeEEEEecccccceeeeeeeccCCCCC-ccccCceeeeeeeEEEECCeEEEEEEEeCCCC----cccc---ccccceecC
Q 028595 5 AKLACLFATQVTSFLLYVLSVSGRSSI-WDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQ----EDYN---RLRPLSYRG 76 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~----~~~~---~~~~~~~~~ 76 (207)
..++++|.|++| ||||++.+++.... .+|.-|+-....-.+..+| .++++.|+||- ..-+ ...-...++
T Consensus 64 a~v~lVGfPsvG-KStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~g--a~IQild~Pgii~gas~g~grG~~vlsv~R~ 140 (365)
T COG1163 64 ATVALVGFPSVG-KSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYKG--AQIQLLDLPGIIEGASSGRGRGRQVLSVARN 140 (365)
T ss_pred eEEEEEcCCCcc-HHHHHHHHhCCCccccccCceecccccceEeecC--ceEEEEcCcccccCcccCCCCcceeeeeecc
Confidence 468999999999 99999999988753 4555554443344555555 77899999972 2212 223456789
Q ss_pred CcEEEEEEeCCChhhH-HHHHHHHH-------------------------------------------HHHhhcC-----
Q 028595 77 ADVFVLAFSLVSRASY-ENVLKKWI-------------------------------------------PELQHYS----- 107 (207)
Q Consensus 77 ~d~~i~v~d~~~~~s~-~~~~~~~~-------------------------------------------~~i~~~~----- 107 (207)
||++++|.|+....+. +-+...+. .+..-++
T Consensus 141 ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~nA~V~I 220 (365)
T COG1163 141 ADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIHNADVLI 220 (365)
T ss_pred CCEEEEEEecCCChhHHHHHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHHhCcccceEEE
Confidence 9999999999976552 22211111 1110000
Q ss_pred -----------------CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCCCCCHHHHHH
Q 028595 108 -----------------PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFD 170 (207)
Q Consensus 108 -----------------~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~ 170 (207)
.-+|.+.|.||+|+.. .++...+.+.. ..+.+||.++.|++++.+
T Consensus 221 r~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~---------------~e~~~~l~~~~---~~v~isa~~~~nld~L~e 282 (365)
T COG1163 221 REDVTLDDLIDALEGNRVYKPALYVVNKIDLPG---------------LEELERLARKP---NSVPISAKKGINLDELKE 282 (365)
T ss_pred ecCCcHHHHHHHHhhcceeeeeEEEEecccccC---------------HHHHHHHHhcc---ceEEEecccCCCHHHHHH
Confidence 0158889999999853 34455555555 569999999999999999
Q ss_pred HHHHHHh
Q 028595 171 AAIKVVI 177 (207)
Q Consensus 171 ~i~~~~~ 177 (207)
.+.+.+-
T Consensus 283 ~i~~~L~ 289 (365)
T COG1163 283 RIWDVLG 289 (365)
T ss_pred HHHHhhC
Confidence 9998884
No 258
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.43 E-value=5.6e-13 Score=111.34 Aligned_cols=155 Identities=13% Similarity=-0.006 Sum_probs=91.6
Q ss_pred ceeEEEEecccccceeeeeeeccCCC--CCccc----------cCce-------------------eeeee-eEEEECCe
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRS--SIWDY----------IPTV-------------------FDNFS-ANVVAEGT 51 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~--~~~~~----------~~t~-------------------~~~~~-~~~~~~~~ 51 (207)
..+|+++|..++| ||||+.+|+... +.... ..+. |.+.. ........
T Consensus 27 ~~~i~iiGhvdaG-KSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~~ 105 (474)
T PRK05124 27 LLRFLTCGSVDDG-KSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTE 105 (474)
T ss_pred ceEEEEECCCCCC-hHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEeccC
Confidence 4799999999999 999999997442 11100 0000 00110 01112233
Q ss_pred EEEEEEEeCCCCccccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCC
Q 028595 52 TVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADH 131 (207)
Q Consensus 52 ~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~ 131 (207)
..++.+|||||++.|.......+..+|++++|+|++....-+.. .....+... ...|++++.||+|+.+.+..
T Consensus 106 ~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~--~~~~l~~~l-g~~~iIvvvNKiD~~~~~~~---- 178 (474)
T PRK05124 106 KRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTR--RHSFIATLL-GIKHLVVAVNKMDLVDYSEE---- 178 (474)
T ss_pred CcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccch--HHHHHHHHh-CCCceEEEEEeeccccchhH----
Confidence 46788999999988755444446889999999999764322211 111111111 12578999999998643221
Q ss_pred CCCcccCHHHHHHHHHHhC---CcEEEEeccCCCCCHHHH
Q 028595 132 PGLVPVTTAQGEELRKQIG---ASYYIECSSKTQQNVKAV 168 (207)
Q Consensus 132 ~~~~~v~~~~~~~~~~~~~---~~~~~e~Sa~~~~~i~~~ 168 (207)
......++...+....+ ..+++.+||++|.|+.++
T Consensus 179 --~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~ 216 (474)
T PRK05124 179 --VFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ 216 (474)
T ss_pred --HHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence 00001223334444443 247999999999999764
No 259
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.42 E-value=9.2e-13 Score=89.81 Aligned_cols=105 Identities=18% Similarity=0.152 Sum_probs=68.7
Q ss_pred eEEEEecccccceeeeeeeccCCCCC--ccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccc---------ccccee
Q 028595 6 KLACLFATQVTSFLLYVLSVSGRSSI--WDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNR---------LRPLSY 74 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~---------~~~~~~ 74 (207)
+|+++|.+++| ||||+|+|++.+.. ....++........+..++..+ .++||||-..... .....+
T Consensus 1 ~V~iiG~~~~G-KSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~~~~~--~~vDtpG~~~~~~~~~~~~~~~~~~~~~ 77 (116)
T PF01926_consen 1 RVAIIGRPNVG-KSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYNNKKF--ILVDTPGINDGESQDNDGKEIRKFLEQI 77 (116)
T ss_dssp EEEEEESTTSS-HHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEETTEEE--EEEESSSCSSSSHHHHHHHHHHHHHHHH
T ss_pred CEEEECCCCCC-HHHHHHHHhccccccccccccceeeeeeeeeeeceeeE--EEEeCCCCcccchhhHHHHHHHHHHHHH
Confidence 68999999999 99999999986532 2222222222223455566554 6999999543211 122233
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeC
Q 028595 75 RGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 118 (207)
Q Consensus 75 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK 118 (207)
..+|++++|+|.+++.. +.. ..++..++ .+.|+++|.||
T Consensus 78 ~~~d~ii~vv~~~~~~~-~~~-~~~~~~l~---~~~~~i~v~NK 116 (116)
T PF01926_consen 78 SKSDLIIYVVDASNPIT-EDD-KNILRELK---NKKPIILVLNK 116 (116)
T ss_dssp CTESEEEEEEETTSHSH-HHH-HHHHHHHH---TTSEEEEEEES
T ss_pred HHCCEEEEEEECCCCCC-HHH-HHHHHHHh---cCCCEEEEEcC
Confidence 78999999999888432 222 34555553 48999999998
No 260
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.42 E-value=1.2e-12 Score=114.26 Aligned_cols=116 Identities=12% Similarity=-0.012 Sum_probs=80.1
Q ss_pred ccceeEEEEecccccceeeeeeeccCC--CCC--ccccC--c----------eeeee---eeEEEECCeEEEEEEEeCCC
Q 028595 2 ELLAKLACLFATQVTSFLLYVLSVSGR--SSI--WDYIP--T----------VFDNF---SANVVAEGTTVNLGLWDTAG 62 (207)
Q Consensus 2 ~~~~ki~iiG~~~~GgKssli~~l~~~--~~~--~~~~~--t----------~~~~~---~~~~~~~~~~~~l~i~D~~G 62 (207)
+...+|+++|..++| ||||+++|+.. ... ....+ + -|.+. ...+..+ .+.+.+|||||
T Consensus 8 ~~irni~iiG~~~~G-KsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~--~~~i~liDTPG 84 (689)
T TIGR00484 8 NRFRNIGISAHIDAG-KTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWK--GHRINIIDTPG 84 (689)
T ss_pred ccccEEEEECCCCCC-HHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEEC--CeEEEEEECCC
Confidence 345699999999999 99999999632 110 00000 0 01111 1122223 47889999999
Q ss_pred CccccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccC
Q 028595 63 QEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED 124 (207)
Q Consensus 63 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~ 124 (207)
+.++...+..+++.+|++++|+|.++....+.. .++..+.. .++|+++++||+|+...
T Consensus 85 ~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~--~~~~~~~~--~~~p~ivviNK~D~~~~ 142 (689)
T TIGR00484 85 HVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSE--TVWRQANR--YEVPRIAFVNKMDKTGA 142 (689)
T ss_pred CcchhHHHHHHHHHhCEEEEEEeCCCCCChhHH--HHHHHHHH--cCCCEEEEEECCCCCCC
Confidence 998887788889999999999999986555543 33334433 37899999999998754
No 261
>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=99.41 E-value=3.9e-13 Score=99.18 Aligned_cols=171 Identities=15% Similarity=0.153 Sum_probs=108.9
Q ss_pred CccceeEEEEecccccceeeeeeeccCCCCCcc---ccCceeeeeeeEEEECCeEEEEEEEeCCCCccc-----cccccc
Q 028595 1 MELLAKLACLFATQVTSFLLYVLSVSGRSSIWD---YIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY-----NRLRPL 72 (207)
Q Consensus 1 m~~~~ki~iiG~~~~GgKssli~~l~~~~~~~~---~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~-----~~~~~~ 72 (207)
|....||+++|..++| ||++-..+..+....+ .-+|+....+.....+ +..+++||++||+.+ .+....
T Consensus 1 ~~~~kKvlLMGrsGsG-KsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflG--nl~LnlwDcGgqe~fmen~~~~q~d~ 77 (295)
T KOG3886|consen 1 VVMKKKVLLMGRSGSG-KSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLG--NLVLNLWDCGGQEEFMENYLSSQEDN 77 (295)
T ss_pred CcccceEEEeccCCCC-ccccchhhhhhhhhhhhhccCCcceeeehhhhhhh--hheeehhccCCcHHHHHHHHhhcchh
Confidence 3456799999999999 9998877764442222 1233333333322222 478999999999833 234567
Q ss_pred eecCCcEEEEEEeCCChhhHHHHHHHHHH---HHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHh
Q 028595 73 SYRGADVFVLAFSLVSRASYENVLKKWIP---ELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI 149 (207)
Q Consensus 73 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~---~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 149 (207)
.++++++.|+|||++..+-..++ ..+.. .+-+++|+..+.+..+|.|+...... ....+...+..+.+.+..
T Consensus 78 iF~nV~vli~vFDves~e~~~D~-~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~~d~r----~~if~~r~~~l~~~s~~~ 152 (295)
T KOG3886|consen 78 IFRNVQVLIYVFDVESREMEKDF-HYYQKCLEALLQNSPEAKIFCLLHKMDLVQEDAR----ELIFQRRKEDLRRLSRPL 152 (295)
T ss_pred hheeheeeeeeeeccchhhhhhH-HHHHHHHHHHHhcCCcceEEEEEeechhcccchH----HHHHHHHHHHHHHhcccc
Confidence 88999999999999998877777 55544 45566688889999999999754321 001111122233333333
Q ss_pred CCcEEEEeccCCCCCHHHHHHHHHHHHhCCCc
Q 028595 150 GASYYIECSSKTQQNVKAVFDAAIKVVIKPPQ 181 (207)
Q Consensus 150 ~~~~~~e~Sa~~~~~i~~~f~~i~~~~~~~~~ 181 (207)
++ .++.+|.-+ +++-+++..+...+.+..+
T Consensus 153 ~~-~~f~TsiwD-etl~KAWS~iv~~lipn~~ 182 (295)
T KOG3886|consen 153 EC-KCFPTSIWD-ETLYKAWSSIVYNLIPNVS 182 (295)
T ss_pred cc-cccccchhh-HHHHHHHHHHHHhhCCChH
Confidence 44 667777654 5666666666666665543
No 262
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.40 E-value=1.3e-12 Score=108.43 Aligned_cols=155 Identities=13% Similarity=0.015 Sum_probs=97.7
Q ss_pred ceeEEEEecccccceeeeeeeccCCC--CCc------------------------cccCc---eeeeeee-EEEECCeEE
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRS--SIW------------------------DYIPT---VFDNFSA-NVVAEGTTV 53 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~--~~~------------------------~~~~t---~~~~~~~-~~~~~~~~~ 53 (207)
..+|+++|...+| ||||+-+|+... ... +..+. -|.+... .........
T Consensus 7 ~~ni~i~Ghvd~G-KSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~~ 85 (447)
T PLN00043 7 HINIVVIGHVDSG-KSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKY 85 (447)
T ss_pred eEEEEEEecCCCC-HHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCCE
Confidence 3579999999999 999998886311 100 00000 0111111 112234457
Q ss_pred EEEEEeCCCCccccccccceecCCcEEEEEEeCCChhhHH-------HHHHHHHHHHhhcCCCC-cEEEEeeCCCcccCc
Q 028595 54 NLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYE-------NVLKKWIPELQHYSPGV-PVVLVGTKLDLREDK 125 (207)
Q Consensus 54 ~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~-------~~~~~~~~~i~~~~~~~-piivv~nK~D~~~~~ 125 (207)
.+.+.|+||+++|.......+..+|++|+|+|+++. +++ .. ...+..+.. .++ ++++++||+|+.+..
T Consensus 86 ~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G-~~e~g~~~~~qT-~eh~~~~~~--~gi~~iIV~vNKmD~~~~~ 161 (447)
T PLN00043 86 YCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTG-GFEAGISKDGQT-REHALLAFT--LGVKQMICCCNKMDATTPK 161 (447)
T ss_pred EEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccC-ceecccCCCchH-HHHHHHHHH--cCCCcEEEEEEcccCCchh
Confidence 889999999999988888888999999999999872 221 22 222222222 256 478899999986211
Q ss_pred ccccCCCCCcccCHHHHHHHHHHhCC----cEEEEeccCCCCCHHH
Q 028595 126 HYLADHPGLVPVTTAQGEELRKQIGA----SYYIECSSKTQQNVKA 167 (207)
Q Consensus 126 ~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~e~Sa~~~~~i~~ 167 (207)
.. ........++++.+++..|+ .+|+++||.+|+|+.+
T Consensus 162 ~~----~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 162 YS----KARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred hh----HHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence 00 00000135678888887773 3799999999999854
No 263
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.40 E-value=1.1e-11 Score=90.45 Aligned_cols=112 Identities=16% Similarity=0.048 Sum_probs=77.6
Q ss_pred eeEEEEecccccceeeeeeeccCCCCCccccCceeeee--eeEEEECCeEEEEEEEeCCCCccccccccceec---CCcE
Q 028595 5 AKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF--SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYR---GADV 79 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~--~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~---~~d~ 79 (207)
.-|.++|..++| ||+|..+|..+.. .+|....- ...+..+.. .+.+.|.||+++.+.....+++ .+-+
T Consensus 39 ~~Vll~Gl~dSG-KT~LF~qL~~gs~----~~TvtSiepn~a~~r~gs~--~~~LVD~PGH~rlR~kl~e~~~~~~~aka 111 (238)
T KOG0090|consen 39 NAVLLVGLSDSG-KTSLFTQLITGSH----RGTVTSIEPNEATYRLGSE--NVTLVDLPGHSRLRRKLLEYLKHNYSAKA 111 (238)
T ss_pred CcEEEEecCCCC-ceeeeeehhcCCc----cCeeeeeccceeeEeecCc--ceEEEeCCCcHHHHHHHHHHcccccccee
Confidence 358899999999 9999999998843 33432211 223333332 2789999999998877766776 6889
Q ss_pred EEEEEeCCC-hhhHHHHHHHHHHHHhhc---CCCCcEEEEeeCCCccc
Q 028595 80 FVLAFSLVS-RASYENVLKKWIPELQHY---SPGVPVVLVGTKLDLRE 123 (207)
Q Consensus 80 ~i~v~d~~~-~~s~~~~~~~~~~~i~~~---~~~~piivv~nK~D~~~ 123 (207)
++||.|..- .....++...++..+... ...+|++++.||.|+..
T Consensus 112 iVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~t 159 (238)
T KOG0090|consen 112 IVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFT 159 (238)
T ss_pred EEEEEeccccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhh
Confidence 999998652 334444434455555443 25799999999999854
No 264
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.39 E-value=6.2e-12 Score=112.24 Aligned_cols=149 Identities=18% Similarity=0.174 Sum_probs=91.0
Q ss_pred ceeeeeeeccCCCCCccccCc----eeeeeeeEEEECC-e----------E-----EEEEEEeCCCCccccccccceecC
Q 028595 17 SFLLYVLSVSGRSSIWDYIPT----VFDNFSANVVAEG-T----------T-----VNLGLWDTAGQEDYNRLRPLSYRG 76 (207)
Q Consensus 17 gKssli~~l~~~~~~~~~~~t----~~~~~~~~~~~~~-~----------~-----~~l~i~D~~G~~~~~~~~~~~~~~ 76 (207)
+||||+..+.+.+......-. +|.. .+..+. . . -.+.+|||||++.|..+....+..
T Consensus 473 ~KTtLLD~iR~t~v~~~EaGGITQ~IGa~---~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~ 549 (1049)
T PRK14845 473 HNTTLLDKIRKTRVAKKEAGGITQHIGAT---EIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSL 549 (1049)
T ss_pred ccccHHHHHhCCCcccccCCCceeccceE---EEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhccc
Confidence 399999999988765432211 1221 111111 0 0 127899999999998888888888
Q ss_pred CcEEEEEEeCCC---hhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCccc------CHHHHH----
Q 028595 77 ADVFVLAFSLVS---RASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPV------TTAQGE---- 143 (207)
Q Consensus 77 ~d~~i~v~d~~~---~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v------~~~~~~---- 143 (207)
+|++++|+|+++ +++++.+ . .+.. .++|+++|+||+|+.+........+-...+ ...+..
T Consensus 550 aDivlLVVDa~~Gi~~qT~e~I-~----~lk~--~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~~l~ 622 (1049)
T PRK14845 550 ADLAVLVVDINEGFKPQTIEAI-N----ILRQ--YKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEIKLY 622 (1049)
T ss_pred CCEEEEEEECcccCCHhHHHHH-H----HHHH--cCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHHHHH
Confidence 999999999987 4555544 2 2322 268999999999986432110000000000 001110
Q ss_pred HH---HHHh--------------CCcEEEEeccCCCCCHHHHHHHHHHH
Q 028595 144 EL---RKQI--------------GASYYIECSSKTQQNVKAVFDAAIKV 175 (207)
Q Consensus 144 ~~---~~~~--------------~~~~~~e~Sa~~~~~i~~~f~~i~~~ 175 (207)
.+ ..++ +..+++++||++|+|++++...+...
T Consensus 623 ~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l 671 (1049)
T PRK14845 623 ELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGL 671 (1049)
T ss_pred HHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHh
Confidence 00 1111 23478999999999999999877644
No 265
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.39 E-value=6.4e-13 Score=114.96 Aligned_cols=154 Identities=16% Similarity=0.051 Sum_probs=91.8
Q ss_pred ceeEEEEecccccceeeeeeeccCCC--CCcc----------ccCceeeeeee--------------------EEEECCe
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRS--SIWD----------YIPTVFDNFSA--------------------NVVAEGT 51 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~--~~~~----------~~~t~~~~~~~--------------------~~~~~~~ 51 (207)
..+|+++|..++| ||||+++|+... +... ...+..+.+.. .......
T Consensus 24 ~~~i~iiGh~~~G-KSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~~~ 102 (632)
T PRK05506 24 LLRFITCGSVDDG-KSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFATP 102 (632)
T ss_pred eeEEEEECCCCCC-hHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEccC
Confidence 4689999999999 999999998542 1110 00010000110 0111222
Q ss_pred EEEEEEEeCCCCccccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCC
Q 028595 52 TVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADH 131 (207)
Q Consensus 52 ~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~ 131 (207)
...+.++||||++.|.......+..+|++++|+|++....-+.. .....+... ...|++++.||+|+.+....
T Consensus 103 ~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~--e~~~~~~~~-~~~~iivvvNK~D~~~~~~~---- 175 (632)
T PRK05506 103 KRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTR--RHSFIASLL-GIRHVVLAVNKMDLVDYDQE---- 175 (632)
T ss_pred CceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCH--HHHHHHHHh-CCCeEEEEEEecccccchhH----
Confidence 34678999999988755444457889999999999764332221 112222221 23678999999998642210
Q ss_pred CCCcccCHHHHHHHHHHhCC--cEEEEeccCCCCCHHH
Q 028595 132 PGLVPVTTAQGEELRKQIGA--SYYIECSSKTQQNVKA 167 (207)
Q Consensus 132 ~~~~~v~~~~~~~~~~~~~~--~~~~e~Sa~~~~~i~~ 167 (207)
.......+...+...++. .+++.+||++|.|+.+
T Consensus 176 --~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~ 211 (632)
T PRK05506 176 --VFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT 211 (632)
T ss_pred --HHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence 000012334445556664 3589999999999874
No 266
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.36 E-value=9.8e-12 Score=102.01 Aligned_cols=148 Identities=16% Similarity=0.204 Sum_probs=102.5
Q ss_pred EEEEecccccceeeeeeeccCCCCCccccCcee---eeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEE
Q 028595 7 LACLFATQVTSFLLYVLSVSGRSSIWDYIPTVF---DNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA 83 (207)
Q Consensus 7 i~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~---~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v 83 (207)
|-++|--..| ||||+..|-+..........++ .-|...+. +| -.+.+.||||+.-|..|+..=..-+|++++|
T Consensus 156 VTiMGHVDHG-KTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p-~G--~~iTFLDTPGHaAF~aMRaRGA~vtDIvVLV 231 (683)
T KOG1145|consen 156 VTIMGHVDHG-KTTLLDALRKSSVAAGEAGGITQHIGAFTVTLP-SG--KSITFLDTPGHAAFSAMRARGANVTDIVVLV 231 (683)
T ss_pred EEEeecccCC-hhhHHHHHhhCceehhhcCCccceeceEEEecC-CC--CEEEEecCCcHHHHHHHHhccCccccEEEEE
Confidence 5577778888 9999999987765443211111 11222232 44 5678999999999999999888899999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHH-H------HHHhCC-cEE
Q 028595 84 FSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEE-L------RKQIGA-SYY 154 (207)
Q Consensus 84 ~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~-~------~~~~~~-~~~ 154 (207)
....|.---+.+ +.|.+.. .++|++++.||+|.++.+ .+...+ + .+.+|. .+.
T Consensus 232 VAadDGVmpQT~-----EaIkhAk~A~VpiVvAinKiDkp~a~-------------pekv~~eL~~~gi~~E~~GGdVQv 293 (683)
T KOG1145|consen 232 VAADDGVMPQTL-----EAIKHAKSANVPIVVAINKIDKPGAN-------------PEKVKRELLSQGIVVEDLGGDVQV 293 (683)
T ss_pred EEccCCccHhHH-----HHHHHHHhcCCCEEEEEeccCCCCCC-------------HHHHHHHHHHcCccHHHcCCceeE
Confidence 999884333322 2332222 599999999999987553 222222 2 233443 478
Q ss_pred EEeccCCCCCHHHHHHHHHHHH
Q 028595 155 IECSSKTQQNVKAVFDAAIKVV 176 (207)
Q Consensus 155 ~e~Sa~~~~~i~~~f~~i~~~~ 176 (207)
+++||++|.|++.+-+.++-..
T Consensus 294 ipiSAl~g~nl~~L~eaill~A 315 (683)
T KOG1145|consen 294 IPISALTGENLDLLEEAILLLA 315 (683)
T ss_pred EEeecccCCChHHHHHHHHHHH
Confidence 9999999999999999877555
No 267
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.34 E-value=3.2e-12 Score=106.10 Aligned_cols=153 Identities=13% Similarity=0.009 Sum_probs=94.6
Q ss_pred ceeEEEEecccccceeeeeeeccC--CCCCc------------------------cccCc---eeeee-eeEEEECCeEE
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSG--RSSIW------------------------DYIPT---VFDNF-SANVVAEGTTV 53 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~--~~~~~------------------------~~~~t---~~~~~-~~~~~~~~~~~ 53 (207)
..+|+++|...+| ||||+.+|+. +.... +..+. -|.+. ...........
T Consensus 7 ~~nv~i~Ghvd~G-KSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~~ 85 (446)
T PTZ00141 7 HINLVVIGHVDSG-KSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKY 85 (446)
T ss_pred eEEEEEEecCCCC-HHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCCe
Confidence 4579999999999 9999999864 11110 00000 01111 11122334457
Q ss_pred EEEEEeCCCCccccccccceecCCcEEEEEEeCCChhh---H---HHHHHHHHHHHhhcCCCCc-EEEEeeCCCccc--C
Q 028595 54 NLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRAS---Y---ENVLKKWIPELQHYSPGVP-VVLVGTKLDLRE--D 124 (207)
Q Consensus 54 ~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~---~~~~~~~~~~i~~~~~~~p-iivv~nK~D~~~--~ 124 (207)
.+.|+||||+++|.......+..+|++++|.|.++..- + ... ...+..+... ++| ++++.||.|... .
T Consensus 86 ~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT-~eh~~~~~~~--gi~~iiv~vNKmD~~~~~~ 162 (446)
T PTZ00141 86 YFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQT-REHALLAFTL--GVKQMIVCINKMDDKTVNY 162 (446)
T ss_pred EEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccH-HHHHHHHHHc--CCCeEEEEEEccccccchh
Confidence 88999999999987766666788999999999986420 0 111 1222233222 665 679999999532 1
Q ss_pred c-ccccCCCCCcccCHHHHHHHHHHhCC----cEEEEeccCCCCCHHH
Q 028595 125 K-HYLADHPGLVPVTTAQGEELRKQIGA----SYYIECSSKTQQNVKA 167 (207)
Q Consensus 125 ~-~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~e~Sa~~~~~i~~ 167 (207)
. .. .....++++.+....++ .+++.+|+.+|+|+.+
T Consensus 163 ~~~~-------~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 163 SQER-------YDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred hHHH-------HHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence 1 10 00133556666666554 4799999999999864
No 268
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.34 E-value=3.3e-12 Score=105.86 Aligned_cols=164 Identities=10% Similarity=0.070 Sum_probs=100.5
Q ss_pred ceeEEEEecccccceeeeeeeccCCCC---CccccC--ceeeeeeeE-------------E-EEC-C-----------e-
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSS---IWDYIP--TVFDNFSAN-------------V-VAE-G-----------T- 51 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~---~~~~~~--t~~~~~~~~-------------~-~~~-~-----------~- 51 (207)
...|.++|.-.+| ||||+..|++-.. .++... |+..-|... + ..+ + .
T Consensus 34 ~~~ig~~GHVDhG-KTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (460)
T PTZ00327 34 TINIGTIGHVAHG-KSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGHK 112 (460)
T ss_pred cEEEEEEccCCCC-HHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCccccccccccccc
Confidence 4679999999999 9999999986432 111100 100000000 0 000 0 0
Q ss_pred ---EEEEEEEeCCCCccccccccceecCCcEEEEEEeCCCh-hhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCccc
Q 028595 52 ---TVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSR-ASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHY 127 (207)
Q Consensus 52 ---~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~-~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~ 127 (207)
...+.++|+||++.|-.....-+..+|++++|.|+.+. ...+.. ..+..+... .-.|++++.||+|+.+....
T Consensus 113 ~~~~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~--ehl~i~~~l-gi~~iIVvlNKiDlv~~~~~ 189 (460)
T PTZ00327 113 MTLKRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTS--EHLAAVEIM-KLKHIIILQNKIDLVKEAQA 189 (460)
T ss_pred ccccceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhH--HHHHHHHHc-CCCcEEEEEecccccCHHHH
Confidence 23678999999998866555556789999999999874 222221 222222221 13468999999999753221
Q ss_pred ccCCCCCcccCHHHHHHHHHHh--CCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 028595 128 LADHPGLVPVTTAQGEELRKQI--GASYYIECSSKTQQNVKAVFDAAIKVVIKP 179 (207)
Q Consensus 128 ~~~~~~~~~v~~~~~~~~~~~~--~~~~~~e~Sa~~~~~i~~~f~~i~~~~~~~ 179 (207)
....++.+.+.... ...+++.+||++|.|++.+++.|.+.+..+
T Consensus 190 --------~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~lp~~ 235 (460)
T PTZ00327 190 --------QDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQIPIP 235 (460)
T ss_pred --------HHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhCCCC
Confidence 00223344444332 223899999999999999999998866544
No 269
>PRK12739 elongation factor G; Reviewed
Probab=99.34 E-value=9.8e-12 Score=108.57 Aligned_cols=115 Identities=17% Similarity=0.085 Sum_probs=78.8
Q ss_pred ccceeEEEEecccccceeeeeeeccCC--CCC-----c------cc-----cCceeeee-eeEEEECCeEEEEEEEeCCC
Q 028595 2 ELLAKLACLFATQVTSFLLYVLSVSGR--SSI-----W------DY-----IPTVFDNF-SANVVAEGTTVNLGLWDTAG 62 (207)
Q Consensus 2 ~~~~ki~iiG~~~~GgKssli~~l~~~--~~~-----~------~~-----~~t~~~~~-~~~~~~~~~~~~l~i~D~~G 62 (207)
+...+|+++|..++| ||||+++|+.. ... . ++ ...+.... ...+..+ ..++.++||||
T Consensus 6 ~~irni~iiGh~~~G-KsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~--~~~i~liDTPG 82 (691)
T PRK12739 6 EKTRNIGIMAHIDAG-KTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWK--GHRINIIDTPG 82 (691)
T ss_pred cCeeEEEEECCCCCC-HHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEEC--CEEEEEEcCCC
Confidence 456799999999999 99999999632 100 0 00 00011111 1122333 46789999999
Q ss_pred CccccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCccc
Q 028595 63 QEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRE 123 (207)
Q Consensus 63 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~ 123 (207)
+..+...+...+..+|++++|+|.++....+.. ..+..+.. .++|++++.||+|+..
T Consensus 83 ~~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~--~i~~~~~~--~~~p~iv~iNK~D~~~ 139 (691)
T PRK12739 83 HVDFTIEVERSLRVLDGAVAVFDAVSGVEPQSE--TVWRQADK--YGVPRIVFVNKMDRIG 139 (691)
T ss_pred HHHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHH--HHHHHHHH--cCCCEEEEEECCCCCC
Confidence 988877788889999999999999886554443 33334433 3789999999999874
No 270
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.33 E-value=3.1e-12 Score=103.73 Aligned_cols=161 Identities=19% Similarity=0.097 Sum_probs=104.4
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCC--ccccCceeeeeeeEEEECCeEEEEEEEeCCCCcc-cccc--------ccc
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSI--WDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED-YNRL--------RPL 72 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~-~~~~--------~~~ 72 (207)
...|+++|.|||| ||||+|.|.+.... .....|+.+-....+.++| +.+.|.||+|-.. -... ...
T Consensus 268 gl~iaIvGrPNvG-KSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G--~~v~L~DTAGiRe~~~~~iE~~gI~rA~k 344 (531)
T KOG1191|consen 268 GLQIAIVGRPNVG-KSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVNG--VPVRLSDTAGIREESNDGIEALGIERARK 344 (531)
T ss_pred CCeEEEEcCCCCC-HHHHHHHHhcCCceEeCCCCCcchhhheeEeecCC--eEEEEEeccccccccCChhHHHhHHHHHH
Confidence 4689999999999 99999999987643 3333444455566777777 6678999999544 1111 123
Q ss_pred eecCCcEEEEEEeCC--ChhhHHHHHHHHHHHHhhcC-------CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHH
Q 028595 73 SYRGADVFVLAFSLV--SRASYENVLKKWIPELQHYS-------PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGE 143 (207)
Q Consensus 73 ~~~~~d~~i~v~d~~--~~~s~~~~~~~~~~~i~~~~-------~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~ 143 (207)
.+..+|++++|+|.. +-++-..+ ...++...... .+.|++++.||+|+...-.. ......
T Consensus 345 ~~~~advi~~vvda~~~~t~sd~~i-~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~----------~~~~~~ 413 (531)
T KOG1191|consen 345 RIERADVILLVVDAEESDTESDLKI-ARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPE----------MTKIPV 413 (531)
T ss_pred HHhhcCEEEEEecccccccccchHH-HHHHHHhccceEEEeccccccceEEEechhhccCcccc----------ccCCce
Confidence 466799999999994 33333333 23333333211 24899999999999765211 001011
Q ss_pred HHHHHh---CCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 028595 144 ELRKQI---GASYYIECSSKTQQNVKAVFDAAIKVVIK 178 (207)
Q Consensus 144 ~~~~~~---~~~~~~e~Sa~~~~~i~~~f~~i~~~~~~ 178 (207)
.+.... ....+.++|++++++++++.+.+.+.+..
T Consensus 414 ~~~~~~~~~~~~i~~~vs~~tkeg~~~L~~all~~~~~ 451 (531)
T KOG1191|consen 414 VYPSAEGRSVFPIVVEVSCTTKEGCERLSTALLNIVER 451 (531)
T ss_pred eccccccCcccceEEEeeechhhhHHHHHHHHHHHHHH
Confidence 111111 12246679999999999999999887764
No 271
>PRK09866 hypothetical protein; Provisional
Probab=99.33 E-value=1.3e-11 Score=104.09 Aligned_cols=111 Identities=14% Similarity=0.084 Sum_probs=75.4
Q ss_pred EEEEEEeCCCCccc--c---ccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCccc
Q 028595 53 VNLGLWDTAGQEDY--N---RLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHY 127 (207)
Q Consensus 53 ~~l~i~D~~G~~~~--~---~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~ 127 (207)
.++.+.||||-... + ......+..+|++++|.|.++..+..+. .+.+.+.+.....|+++|.||+|+.+....
T Consensus 230 ~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~De--eIlk~Lkk~~K~~PVILVVNKIDl~dreed 307 (741)
T PRK09866 230 GQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDE--EVREAILAVGQSVPLYVLVNKFDQQDRNSD 307 (741)
T ss_pred CCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhHH--HHHHHHHhcCCCCCEEEEEEcccCCCcccc
Confidence 35678999996432 1 1223468899999999999885554442 445555544333699999999998643221
Q ss_pred ccCCCCCcccCHHHHHHHHHHh------CCcEEEEeccCCCCCHHHHHHHHHHH
Q 028595 128 LADHPGLVPVTTAQGEELRKQI------GASYYIECSSKTQQNVKAVFDAAIKV 175 (207)
Q Consensus 128 ~~~~~~~~~v~~~~~~~~~~~~------~~~~~~e~Sa~~~~~i~~~f~~i~~~ 175 (207)
..+....+.... .....|++||++|.|++++.+.+...
T Consensus 308 ----------dkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~~ 351 (741)
T PRK09866 308 ----------DADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELANN 351 (741)
T ss_pred ----------hHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHhC
Confidence 234444543321 23468999999999999999999874
No 272
>PRK12740 elongation factor G; Reviewed
Probab=99.32 E-value=5e-12 Score=110.27 Aligned_cols=107 Identities=14% Similarity=0.039 Sum_probs=72.0
Q ss_pred EecccccceeeeeeeccCCCC--Cc--ccc--Cce----------e--eee-eeEEEECCeEEEEEEEeCCCCccccccc
Q 028595 10 LFATQVTSFLLYVLSVSGRSS--IW--DYI--PTV----------F--DNF-SANVVAEGTTVNLGLWDTAGQEDYNRLR 70 (207)
Q Consensus 10 iG~~~~GgKssli~~l~~~~~--~~--~~~--~t~----------~--~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~ 70 (207)
+|..++| ||||+++|+...- .. ... .+. + ... ...+..+ .+.+.+|||||+..+...+
T Consensus 1 ig~~~~G-KTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~--~~~i~liDtPG~~~~~~~~ 77 (668)
T PRK12740 1 VGHSGAG-KTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWK--GHKINLIDTPGHVDFTGEV 77 (668)
T ss_pred CCCCCCc-HHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEEC--CEEEEEEECCCcHHHHHHH
Confidence 5888999 9999999953210 00 000 011 1 111 1122223 4789999999998877777
Q ss_pred cceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCccc
Q 028595 71 PLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRE 123 (207)
Q Consensus 71 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~ 123 (207)
..++..+|++++|+|.++....... .++..+.. .++|+++++||+|+..
T Consensus 78 ~~~l~~aD~vllvvd~~~~~~~~~~--~~~~~~~~--~~~p~iiv~NK~D~~~ 126 (668)
T PRK12740 78 ERALRVLDGAVVVVCAVGGVEPQTE--TVWRQAEK--YGVPRIIFVNKMDRAG 126 (668)
T ss_pred HHHHHHhCeEEEEEeCCCCcCHHHH--HHHHHHHH--cCCCEEEEEECCCCCC
Confidence 8889999999999999987666554 33333333 3789999999999864
No 273
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.32 E-value=2.2e-11 Score=90.63 Aligned_cols=163 Identities=19% Similarity=0.174 Sum_probs=98.7
Q ss_pred eeEEEEecccccceeeeeeeccCCCCCcccc--Cceeee-eeeEEEECCeEEEEEEEeCCCCccccc--------c---c
Q 028595 5 AKLACLFATQVTSFLLYVLSVSGRSSIWDYI--PTVFDN-FSANVVAEGTTVNLGLWDTAGQEDYNR--------L---R 70 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~~~~~~~~~--~t~~~~-~~~~~~~~~~~~~l~i~D~~G~~~~~~--------~---~ 70 (207)
.+|+++|.+++| ||||+|.+++........ +..+.. .......++ ..+.++||||-..... + .
T Consensus 1 ~~i~lvG~~g~G-KSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~viDTPG~~d~~~~~~~~~~~i~~~~ 77 (196)
T cd01852 1 LRLVLVGKTGAG-KSATGNTILGREVFESKLSASSVTKTCQKESAVWDG--RRVNVIDTPGLFDTSVSPEQLSKEIVRCL 77 (196)
T ss_pred CEEEEECCCCCC-HHHHHHHhhCCCccccccCCCCcccccceeeEEECC--eEEEEEECcCCCCccCChHHHHHHHHHHH
Confidence 379999999999 999999999886432211 111111 122333455 4689999999543321 1 1
Q ss_pred cceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC---CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHH
Q 028595 71 PLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS---PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRK 147 (207)
Q Consensus 71 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~---~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~ 147 (207)
.....+.|++++|.++.+ .+..+ ...++.+.+.. .-.+++++.|+.|....... .+ ...-.....+.+.+
T Consensus 78 ~~~~~g~~~illVi~~~~-~t~~d--~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~-~~---~~~~~~~~l~~l~~ 150 (196)
T cd01852 78 SLSAPGPHAFLLVVPLGR-FTEEE--EQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTL-ED---YLENSCEALKRLLE 150 (196)
T ss_pred HhcCCCCEEEEEEEECCC-cCHHH--HHHHHHHHHHhChHhHhcEEEEEECccccCCCcH-HH---HHHhccHHHHHHHH
Confidence 123467899999999887 33332 23344443322 13688999999996543221 00 00001245666666
Q ss_pred HhCCcEEEEec-----cCCCCCHHHHHHHHHHHHhC
Q 028595 148 QIGASYYIECS-----SKTQQNVKAVFDAAIKVVIK 178 (207)
Q Consensus 148 ~~~~~~~~e~S-----a~~~~~i~~~f~~i~~~~~~ 178 (207)
..+. .|+.++ +..+.++.++++.+.+.+.+
T Consensus 151 ~c~~-r~~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~ 185 (196)
T cd01852 151 KCGG-RYVAFNNKAKGEEQEQQVKELLAKVESMVKE 185 (196)
T ss_pred HhCC-eEEEEeCCCCcchhHHHHHHHHHHHHHHHHh
Confidence 6665 454444 45678899999999888775
No 274
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.30 E-value=3.4e-12 Score=96.87 Aligned_cols=172 Identities=16% Similarity=0.124 Sum_probs=110.2
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCCccc-cCceeeee-eeEEEECCeEEEEEEEeCCCCcc-------cccccccee
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDY-IPTVFDNF-SANVVAEGTTVNLGLWDTAGQED-------YNRLRPLSY 74 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~-~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~-------~~~~~~~~~ 74 (207)
..+|+++|..++| ||||||++..+...+.. .+...+.. ......++ -.+.|||+||-+. ++.+...++
T Consensus 39 pvnvLi~G~TG~G-KSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~--~~l~lwDtPG~gdg~~~D~~~r~~~~d~l 115 (296)
T COG3596 39 PVNVLLMGATGAG-KSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDG--ENLVLWDTPGLGDGKDKDAEHRQLYRDYL 115 (296)
T ss_pred ceeEEEecCCCCc-HHHHHHHHHhccCceeeecccCCCchhhHHhhccc--cceEEecCCCcccchhhhHHHHHHHHHHh
Confidence 4578899999999 99999999977643322 11111111 11233344 4588999999544 667788899
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccC-ccccc--C--CCCCcccCHHHHHHHHHHh
Q 028595 75 RGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED-KHYLA--D--HPGLVPVTTAQGEELRKQI 149 (207)
Q Consensus 75 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~-~~~~~--~--~~~~~~v~~~~~~~~~~~~ 149 (207)
...|.++.+.+..|+.---+. .++..+....-+.|++++.|.+|.... ..+.. . .+.......+.+....+..
T Consensus 116 ~~~DLvL~l~~~~draL~~d~--~f~~dVi~~~~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~~~ 193 (296)
T COG3596 116 PKLDLVLWLIKADDRALGTDE--DFLRDVIILGLDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGRLF 193 (296)
T ss_pred hhccEEEEeccCCCccccCCH--HHHHHHHHhccCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHH
Confidence 999999999999987655554 333333333345899999999997543 22211 1 1111222222233222222
Q ss_pred C-CcEEEEeccCCCCCHHHHHHHHHHHHhCCC
Q 028595 150 G-ASYYIECSSKTQQNVKAVFDAAIKVVIKPP 180 (207)
Q Consensus 150 ~-~~~~~e~Sa~~~~~i~~~f~~i~~~~~~~~ 180 (207)
. ..|.+..|...+-|++++...++..+....
T Consensus 194 q~V~pV~~~~~r~~wgl~~l~~ali~~lp~e~ 225 (296)
T COG3596 194 QEVKPVVAVSGRLPWGLKELVRALITALPVEA 225 (296)
T ss_pred hhcCCeEEeccccCccHHHHHHHHHHhCcccc
Confidence 1 236777888999999999999999987543
No 275
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.28 E-value=3.4e-12 Score=111.79 Aligned_cols=116 Identities=15% Similarity=0.008 Sum_probs=80.5
Q ss_pred cceeEEEEecccccceeeeeeeccCC---------------CCCcc---ccCceeeee-eeEEEECCeEEEEEEEeCCCC
Q 028595 3 LLAKLACLFATQVTSFLLYVLSVSGR---------------SSIWD---YIPTVFDNF-SANVVAEGTTVNLGLWDTAGQ 63 (207)
Q Consensus 3 ~~~ki~iiG~~~~GgKssli~~l~~~---------------~~~~~---~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~ 63 (207)
...+|+++|..++| ||||+++|+.. .+... ...|+.... ......++..+.+.+|||||+
T Consensus 18 ~irnI~ivGh~~~G-KTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~ 96 (720)
T TIGR00490 18 FIRNIGIVAHIDHG-KTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGH 96 (720)
T ss_pred cccEEEEEEeCCCC-HHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCc
Confidence 35799999999999 99999999742 11111 112332222 222335667899999999999
Q ss_pred ccccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCccc
Q 028595 64 EDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRE 123 (207)
Q Consensus 64 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~ 123 (207)
.+|.......+..+|++++|+|..+....+.. ..|. .+.. .+.|+++++||+|...
T Consensus 97 ~~f~~~~~~al~~aD~~llVvda~~g~~~~t~-~~~~-~~~~--~~~p~ivviNKiD~~~ 152 (720)
T TIGR00490 97 VDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTE-TVLR-QALK--ENVKPVLFINKVDRLI 152 (720)
T ss_pred cccHHHHHHHHHhcCEEEEEEecCCCCCccHH-HHHH-HHHH--cCCCEEEEEEChhccc
Confidence 99888788889999999999999874333332 2222 2222 3678899999999863
No 276
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.27 E-value=5.8e-11 Score=95.90 Aligned_cols=166 Identities=14% Similarity=0.098 Sum_probs=116.4
Q ss_pred CccceeEEEEecccccceeeeeeeccCCC--CCcc------cc------Cceeeee-eeEEEECCeEEEEEEEeCCCCcc
Q 028595 1 MELLAKLACLFATQVTSFLLYVLSVSGRS--SIWD------YI------PTVFDNF-SANVVAEGTTVNLGLWDTAGQED 65 (207)
Q Consensus 1 m~~~~ki~iiG~~~~GgKssli~~l~~~~--~~~~------~~------~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~ 65 (207)
|+...+|++|.--..| ||||+..++.+. |... .. ..-|.+. .+...+.-+.+.++|.||||+.+
T Consensus 2 ~~~iRNIAIIAHVDHG-KTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHAD 80 (603)
T COG1217 2 MEDIRNIAIIAHVDHG-KTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHAD 80 (603)
T ss_pred CcccceeEEEEEecCC-cchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCC
Confidence 4556799999999999 999999998553 2210 00 1112222 44445555568999999999999
Q ss_pred ccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHH
Q 028595 66 YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEEL 145 (207)
Q Consensus 66 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~ 145 (207)
|..-.+..++-+|+++++.|+.+..--+.- -.+.+.+. .+.+.|+|.||+|.+..+.. --.++...+
T Consensus 81 FGGEVERvl~MVDgvlLlVDA~EGpMPQTr-FVlkKAl~---~gL~PIVVvNKiDrp~Arp~---------~Vvd~vfDL 147 (603)
T COG1217 81 FGGEVERVLSMVDGVLLLVDASEGPMPQTR-FVLKKALA---LGLKPIVVINKIDRPDARPD---------EVVDEVFDL 147 (603)
T ss_pred ccchhhhhhhhcceEEEEEEcccCCCCchh-hhHHHHHH---cCCCcEEEEeCCCCCCCCHH---------HHHHHHHHH
Confidence 999999999999999999999885444432 12222332 27888899999999876531 123445555
Q ss_pred HHHhCC------cEEEEeccCCC----------CCHHHHHHHHHHHHhCCC
Q 028595 146 RKQIGA------SYYIECSSKTQ----------QNVKAVFDAAIKVVIKPP 180 (207)
Q Consensus 146 ~~~~~~------~~~~e~Sa~~~----------~~i~~~f~~i~~~~~~~~ 180 (207)
.-.++. .|.+..|+..| .++..+|+.|++.+..+.
T Consensus 148 f~~L~A~deQLdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~ 198 (603)
T COG1217 148 FVELGATDEQLDFPIVYASARNGTASLDPEDEADDMAPLFETILDHVPAPK 198 (603)
T ss_pred HHHhCCChhhCCCcEEEeeccCceeccCccccccchhHHHHHHHHhCCCCC
Confidence 544442 27788888765 579999999999988765
No 277
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.27 E-value=4e-12 Score=103.27 Aligned_cols=186 Identities=14% Similarity=0.049 Sum_probs=118.7
Q ss_pred eeEEEEecccccceeeeeeeccCCCCC-ccccCceeeeeeeEEEECCeEEEEEEEeCCCCcc---c-cccccc----ee-
Q 028595 5 AKLACLFATQVTSFLLYVLSVSGRSSI-WDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED---Y-NRLRPL----SY- 74 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~---~-~~~~~~----~~- 74 (207)
..++++|.++|| ||||+|.++..... +.|.-|.-.-| .-.++.+...+++.||||--+ . +...++ .+
T Consensus 169 rTlllcG~PNVG-KSSf~~~vtradvevqpYaFTTksL~--vGH~dykYlrwQViDTPGILD~plEdrN~IEmqsITALA 245 (620)
T KOG1490|consen 169 RTLLVCGYPNVG-KSSFNNKVTRADDEVQPYAFTTKLLL--VGHLDYKYLRWQVIDTPGILDRPEEDRNIIEMQIITALA 245 (620)
T ss_pred CeEEEecCCCCC-cHhhcccccccccccCCcccccchhh--hhhhhhheeeeeecCCccccCcchhhhhHHHHHHHHHHH
Confidence 467999999999 99999999877643 23332221111 112233456788999999221 1 111111 11
Q ss_pred cCCcEEEEEEeCCChh--hHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHH---HHHHHHHHh
Q 028595 75 RGADVFVLAFSLVSRA--SYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTA---QGEELRKQI 149 (207)
Q Consensus 75 ~~~d~~i~v~d~~~~~--s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~---~~~~~~~~~ 149 (207)
.--.+++++.|++... |...- -.++..|.....+.|.|+|.||+|+-..... ..+ ..+.+.. -
T Consensus 246 HLraaVLYfmDLSe~CGySva~Q-vkLfhsIKpLFaNK~~IlvlNK~D~m~~edL----------~~~~~~ll~~~~~-~ 313 (620)
T KOG1490|consen 246 HLRSAVLYFMDLSEMCGYSVAAQ-VKLYHSIKPLFANKVTILVLNKIDAMRPEDL----------DQKNQELLQTIID-D 313 (620)
T ss_pred HhhhhheeeeechhhhCCCHHHH-HHHHHHhHHHhcCCceEEEeecccccCcccc----------CHHHHHHHHHHHh-c
Confidence 1135899999998642 33333 2445555554569999999999998765542 332 2333333 3
Q ss_pred CCcEEEEeccCCCCCHHHHHHHHHHHHhCCCcchhhhcccCC-CeEEeeecCCcccc
Q 028595 150 GASYYIECSSKTQQNVKAVFDAAIKVVIKPPQKQKEKKKKQR-GCLLNVFCGRNLVR 205 (207)
Q Consensus 150 ~~~~~~e~Sa~~~~~i~~~f~~i~~~~~~~~~~~~~~~~~~~-~c~~~~~~~~~~~~ 205 (207)
+..+++++|+.+.+|+.++-...++.++..+-..+.+.++.. .-+..+++.+|..|
T Consensus 314 ~~v~v~~tS~~~eegVm~Vrt~ACe~LLa~RVE~Klks~~~~n~vlnr~hvA~p~~r 370 (620)
T KOG1490|consen 314 GNVKVVQTSCVQEEGVMDVRTTACEALLAARVEQKLKSESRVNNVLNRIHLAEPAAR 370 (620)
T ss_pred cCceEEEecccchhceeeHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhcCCCcc
Confidence 434899999999999999999999999988766666555554 45555666776655
No 278
>PRK00007 elongation factor G; Reviewed
Probab=99.20 E-value=4.7e-11 Score=104.31 Aligned_cols=142 Identities=14% Similarity=0.118 Sum_probs=89.2
Q ss_pred ccceeEEEEecccccceeeeeeeccC--CCCC-----c------cccC---ceeeee---eeEEEECCeEEEEEEEeCCC
Q 028595 2 ELLAKLACLFATQVTSFLLYVLSVSG--RSSI-----W------DYIP---TVFDNF---SANVVAEGTTVNLGLWDTAG 62 (207)
Q Consensus 2 ~~~~ki~iiG~~~~GgKssli~~l~~--~~~~-----~------~~~~---t~~~~~---~~~~~~~~~~~~l~i~D~~G 62 (207)
+...+|+++|..++| ||||+++|+. +... . ++.+ .-+.+. ...+..+ ...+.+.||||
T Consensus 8 ~~Irni~iiG~~~~G-KsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~--~~~~~liDTPG 84 (693)
T PRK00007 8 ERYRNIGIMAHIDAG-KTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWK--DHRINIIDTPG 84 (693)
T ss_pred cceeEEEEECCCCCC-HHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEEC--CeEEEEEeCCC
Confidence 345699999999999 9999999963 2110 0 0000 001111 1122333 46789999999
Q ss_pred CccccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHH
Q 028595 63 QEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQG 142 (207)
Q Consensus 63 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~ 142 (207)
+..+.......+..+|++++|.|....-..+.. ..+..+... +.|.+++.||+|+.+.. .....
T Consensus 85 ~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~--~~~~~~~~~--~~p~iv~vNK~D~~~~~------------~~~~~ 148 (693)
T PRK00007 85 HVDFTIEVERSLRVLDGAVAVFDAVGGVEPQSE--TVWRQADKY--KVPRIAFVNKMDRTGAD------------FYRVV 148 (693)
T ss_pred cHHHHHHHHHHHHHcCEEEEEEECCCCcchhhH--HHHHHHHHc--CCCEEEEEECCCCCCCC------------HHHHH
Confidence 987766566678889999999998876555543 333344332 78999999999987543 22334
Q ss_pred HHHHHHhCC---cEEEEeccCCC
Q 028595 143 EELRKQIGA---SYYIECSSKTQ 162 (207)
Q Consensus 143 ~~~~~~~~~---~~~~e~Sa~~~ 162 (207)
..+.+.++. ...+.+|+.++
T Consensus 149 ~~i~~~l~~~~~~~~ipisa~~~ 171 (693)
T PRK00007 149 EQIKDRLGANPVPIQLPIGAEDD 171 (693)
T ss_pred HHHHHHhCCCeeeEEecCccCCc
Confidence 444444443 23445666554
No 279
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=99.19 E-value=2.7e-10 Score=90.82 Aligned_cols=147 Identities=19% Similarity=0.267 Sum_probs=96.3
Q ss_pred ccccCceeeeeeeEEEE--------CCeEEEEEEEeCCCCccccccccceecCCcEEEEEEeCCCh----------hhHH
Q 028595 32 WDYIPTVFDNFSANVVA--------EGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSR----------ASYE 93 (207)
Q Consensus 32 ~~~~~t~~~~~~~~~~~--------~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~ 93 (207)
++|.||..+.+...... .-..+.+.+||++||...+..|.+++.+++++|+|.|+++. ..+.
T Consensus 132 ~~y~Pt~~Dil~~r~~T~Gi~~~~f~~~~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~ 211 (317)
T cd00066 132 PDYIPTEQDILRARVKTTGIVETKFTIKNLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQ 211 (317)
T ss_pred CCCCCChhHheeeecccCCeeEEEEEecceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHH
Confidence 46667765444332211 12357789999999999999999999999999999999974 4555
Q ss_pred HHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcc-------cccCCCCCcccCHHHHHHHHHH-----h----CCcEEEE
Q 028595 94 NVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKH-------YLADHPGLVPVTTAQGEELRKQ-----I----GASYYIE 156 (207)
Q Consensus 94 ~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~-------~~~~~~~~~~v~~~~~~~~~~~-----~----~~~~~~e 156 (207)
+....|...+.... .+.|+++++||.|+..... .+.+..+.. -..+.+..|... . .....+.
T Consensus 212 esl~~f~~i~~~~~~~~~pill~~NK~D~f~~ki~~~~l~~~fp~y~g~~-~~~~~~~~~i~~~F~~~~~~~~~~~~~~~ 290 (317)
T cd00066 212 ESLNLFDSICNSRWFANTSIILFLNKKDLFEEKIKKSPLTDYFPDYTGPP-NDYEEAAKFIRKKFLDLNRNPNKEIYPHF 290 (317)
T ss_pred HHHHHHHHHHhCccccCCCEEEEccChHHHHHhhcCCCccccCCCCCCCC-CCHHHHHHHHHHHHHHhhcCCCCeEEEEe
Confidence 55444444444333 5899999999999754221 111111111 133444444332 1 1123456
Q ss_pred eccCCCCCHHHHHHHHHHHHhCC
Q 028595 157 CSSKTQQNVKAVFDAAIKVVIKP 179 (207)
Q Consensus 157 ~Sa~~~~~i~~~f~~i~~~~~~~ 179 (207)
++|.+..++..+|..+...++..
T Consensus 291 t~a~Dt~~i~~vf~~v~~~i~~~ 313 (317)
T cd00066 291 TCATDTENIRFVFDAVKDIILQN 313 (317)
T ss_pred ccccchHHHHHHHHHHHHHHHHH
Confidence 89999999999999998887754
No 280
>PRK00098 GTPase RsgA; Reviewed
Probab=99.16 E-value=4.7e-10 Score=88.73 Aligned_cols=87 Identities=20% Similarity=0.229 Sum_probs=67.8
Q ss_pred eecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCc
Q 028595 73 SYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGAS 152 (207)
Q Consensus 73 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 152 (207)
...++|++++|+|++++++.......|+..+.. .++|+++|+||+|+.+... ......++.+.++.
T Consensus 77 iaaniD~vllV~d~~~p~~~~~~idr~L~~~~~--~~ip~iIVlNK~DL~~~~~-----------~~~~~~~~~~~~g~- 142 (298)
T PRK00098 77 IAANVDQAVLVFAAKEPDFSTDLLDRFLVLAEA--NGIKPIIVLNKIDLLDDLE-----------EARELLALYRAIGY- 142 (298)
T ss_pred eeecCCEEEEEEECCCCCCCHHHHHHHHHHHHH--CCCCEEEEEEhHHcCCCHH-----------HHHHHHHHHHHCCC-
Confidence 458999999999999887766655778777654 4799999999999963322 23344455566777
Q ss_pred EEEEeccCCCCCHHHHHHHHH
Q 028595 153 YYIECSSKTQQNVKAVFDAAI 173 (207)
Q Consensus 153 ~~~e~Sa~~~~~i~~~f~~i~ 173 (207)
+++.+||+++.|++++++.+.
T Consensus 143 ~v~~vSA~~g~gi~~L~~~l~ 163 (298)
T PRK00098 143 DVLELSAKEGEGLDELKPLLA 163 (298)
T ss_pred eEEEEeCCCCccHHHHHhhcc
Confidence 899999999999999998774
No 281
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.13 E-value=4.4e-10 Score=90.52 Aligned_cols=158 Identities=12% Similarity=0.079 Sum_probs=100.4
Q ss_pred ceeEEEEecccccceeeeeeeccCC----CCCc-------------cccC---ceeeeee---eEEE---ECCeEEEEEE
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGR----SSIW-------------DYIP---TVFDNFS---ANVV---AEGTTVNLGL 57 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~----~~~~-------------~~~~---t~~~~~~---~~~~---~~~~~~~l~i 57 (207)
.+.|.++|.-++| ||||+|+|.+. +... +... |+++... ..+. .++....+.+
T Consensus 17 ~IyIGvvGpvrtG-KSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~Vrl 95 (492)
T TIGR02836 17 DIYIGVVGPVRTG-KSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKVRL 95 (492)
T ss_pred cEEEEEEcCCCCC-hHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccEEE
Confidence 4689999999999 99999999988 4331 1111 1112111 1122 2455678899
Q ss_pred EeCCCCccccc-------c----------------------ccceec-CCcEEEEEE-eCC----ChhhHHHHHHHHHHH
Q 028595 58 WDTAGQEDYNR-------L----------------------RPLSYR-GADVFVLAF-SLV----SRASYENVLKKWIPE 102 (207)
Q Consensus 58 ~D~~G~~~~~~-------~----------------------~~~~~~-~~d~~i~v~-d~~----~~~s~~~~~~~~~~~ 102 (207)
.||+|-..... - .+..+. ++|+.|+|. |.+ .++.+.++...+++.
T Consensus 96 IDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i~e 175 (492)
T TIGR02836 96 VDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVIEE 175 (492)
T ss_pred EECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHHHH
Confidence 99998322111 0 123344 789999998 654 234555555678888
Q ss_pred HhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccC--CCCCHHHHHHHHHHHHh
Q 028595 103 LQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK--TQQNVKAVFDAAIKVVI 177 (207)
Q Consensus 103 i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~--~~~~i~~~f~~i~~~~~ 177 (207)
+.+. ++|++++.|++|-.... +.+.+.++.++++. +++.+|+. +.++|..+++.++....
T Consensus 176 Lk~~--~kPfiivlN~~dp~~~e------------t~~l~~~l~eky~v-pvl~v~c~~l~~~DI~~il~~vL~EFP 237 (492)
T TIGR02836 176 LKEL--NKPFIILLNSTHPYHPE------------TEALRQELEEKYDV-PVLAMDVESMRESDILSVLEEVLYEFP 237 (492)
T ss_pred HHhc--CCCEEEEEECcCCCCch------------hHHHHHHHHHHhCC-ceEEEEHHHcCHHHHHHHHHHHHhcCC
Confidence 8775 89999999999932111 44556677778886 66665554 45667777766655443
No 282
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=99.07 E-value=3e-09 Score=83.71 Aligned_cols=88 Identities=18% Similarity=0.182 Sum_probs=68.2
Q ss_pred cceecCCcEEEEEEeCCChh-hHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHh
Q 028595 71 PLSYRGADVFVLAFSLVSRA-SYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI 149 (207)
Q Consensus 71 ~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 149 (207)
...+.++|++++|+|+.++. ++..+ ..|+..+.. .++|+++|+||+|+.+.. .......+....
T Consensus 73 ~~i~anvD~vllV~d~~~p~~s~~~l-dr~L~~~~~--~~ip~iIVlNK~DL~~~~------------~~~~~~~~~~~~ 137 (287)
T cd01854 73 QVIAANVDQLVIVVSLNEPFFNPRLL-DRYLVAAEA--AGIEPVIVLTKADLLDDE------------EEELELVEALAL 137 (287)
T ss_pred eeEEEeCCEEEEEEEcCCCCCCHHHH-HHHHHHHHH--cCCCEEEEEEHHHCCChH------------HHHHHHHHHHhC
Confidence 44588999999999999988 77777 678877765 379999999999996542 112233344556
Q ss_pred CCcEEEEeccCCCCCHHHHHHHHHH
Q 028595 150 GASYYIECSSKTQQNVKAVFDAAIK 174 (207)
Q Consensus 150 ~~~~~~e~Sa~~~~~i~~~f~~i~~ 174 (207)
+. +++.+||+++.|+++++..+..
T Consensus 138 g~-~v~~vSA~~g~gi~~L~~~L~~ 161 (287)
T cd01854 138 GY-PVLAVSAKTGEGLDELREYLKG 161 (287)
T ss_pred CC-eEEEEECCCCccHHHHHhhhcc
Confidence 76 8999999999999999988754
No 283
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=99.06 E-value=1.5e-09 Score=87.22 Aligned_cols=125 Identities=18% Similarity=0.275 Sum_probs=85.2
Q ss_pred EEEEEEeCCCCccccccccceecCCcEEEEEEeCCCh----------hhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCc
Q 028595 53 VNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSR----------ASYENVLKKWIPELQHYS-PGVPVVLVGTKLDL 121 (207)
Q Consensus 53 ~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~ 121 (207)
+.+.+||++|+..++..|.+++.+++++|||.|+++. ..+.+....|...+.... .+.|++|++||.|+
T Consensus 184 ~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~D~ 263 (342)
T smart00275 184 LFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKIDL 263 (342)
T ss_pred eEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecHHh
Confidence 6688999999999999999999999999999999973 345555444444444322 68999999999997
Q ss_pred ccCcc-------cccCCCCCcccCHHHHHHHHHH-----hC-----CcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 028595 122 REDKH-------YLADHPGLVPVTTAQGEELRKQ-----IG-----ASYYIECSSKTQQNVKAVFDAAIKVVIKP 179 (207)
Q Consensus 122 ~~~~~-------~~~~~~~~~~v~~~~~~~~~~~-----~~-----~~~~~e~Sa~~~~~i~~~f~~i~~~~~~~ 179 (207)
....- .+++..+. -..+.+..|... .. ....+.++|.+..++..+|..+...++..
T Consensus 264 ~~~Kl~~~~l~~~fp~y~g~--~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~~~ 336 (342)
T smart00275 264 FEEKIKKVPLVDYFPDYKGP--NDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDIILQR 336 (342)
T ss_pred HHHHhCCCchhccCCCCCCC--CCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHHHHH
Confidence 54221 11111111 133343333322 11 12445788999999999999988877654
No 284
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=99.06 E-value=8.4e-10 Score=82.22 Aligned_cols=102 Identities=20% Similarity=0.227 Sum_probs=64.2
Q ss_pred EEEEEEeCCCCccccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcE--EEEeeCCCcccCcccccC
Q 028595 53 VNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPV--VLVGTKLDLREDKHYLAD 130 (207)
Q Consensus 53 ~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~pi--ivv~nK~D~~~~~~~~~~ 130 (207)
....+.++.|...-..... .-+|.+|.|+|+.+.++... .+. +++.. ++++||+|+.+....
T Consensus 92 ~D~iiIEt~G~~l~~~~~~---~l~~~~i~vvD~~~~~~~~~---~~~-------~qi~~ad~~~~~k~d~~~~~~~--- 155 (199)
T TIGR00101 92 LEMVFIESGGDNLSATFSP---ELADLTIFVIDVAAGDKIPR---KGG-------PGITRSDLLVINKIDLAPMVGA--- 155 (199)
T ss_pred CCEEEEECCCCCcccccch---hhhCcEEEEEEcchhhhhhh---hhH-------hHhhhccEEEEEhhhccccccc---
Confidence 3445667766322111111 12688999999988666432 111 23344 889999999753111
Q ss_pred CCCCcccCHHHHHHHHHH-hCCcEEEEeccCCCCCHHHHHHHHHHHHh
Q 028595 131 HPGLVPVTTAQGEELRKQ-IGASYYIECSSKTQQNVKAVFDAAIKVVI 177 (207)
Q Consensus 131 ~~~~~~v~~~~~~~~~~~-~~~~~~~e~Sa~~~~~i~~~f~~i~~~~~ 177 (207)
..+...+..+. ....+++++||++|+|++++|+++.+.+.
T Consensus 156 -------~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~~ 196 (199)
T TIGR00101 156 -------DLGVMERDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYAL 196 (199)
T ss_pred -------cHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 34444444444 23358999999999999999999987654
No 285
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.05 E-value=7.5e-10 Score=86.75 Aligned_cols=116 Identities=13% Similarity=0.029 Sum_probs=68.0
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCC--ccccCceeeeeeeEEEECCeEEEEEEEeCCCCcccccc-------cccee
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSI--WDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRL-------RPLSY 74 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~-------~~~~~ 74 (207)
..+|+++|..++| |||++|+|++.... ....++...........+| ..+.+|||||....... ...++
T Consensus 38 ~~rIllvGktGVG-KSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~~G--~~l~VIDTPGL~d~~~~~e~~~~~ik~~l 114 (313)
T TIGR00991 38 SLTILVMGKGGVG-KSSTVNSIIGERIATVSAFQSEGLRPMMVSRTRAG--FTLNIIDTPGLIEGGYINDQAVNIIKRFL 114 (313)
T ss_pred ceEEEEECCCCCC-HHHHHHHHhCCCcccccCCCCcceeEEEEEEEECC--eEEEEEECCCCCchHHHHHHHHHHHHHHh
Confidence 4689999999999 99999999987642 1222211111112223344 67899999996543211 12222
Q ss_pred --cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC---CCCcEEEEeeCCCccc
Q 028595 75 --RGADVFVLAFSLVSRASYENVLKKWIPELQHYS---PGVPVVLVGTKLDLRE 123 (207)
Q Consensus 75 --~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~---~~~piivv~nK~D~~~ 123 (207)
...|++++|..++.. .+.......++.+.... --.+.+|+.|+.|..+
T Consensus 115 ~~~g~DvVLyV~rLD~~-R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~ 167 (313)
T TIGR00991 115 LGKTIDVLLYVDRLDAY-RVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSP 167 (313)
T ss_pred hcCCCCEEEEEeccCcc-cCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCC
Confidence 258999999665432 11111122333333322 1357999999999764
No 286
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.04 E-value=8.4e-10 Score=83.88 Aligned_cols=142 Identities=16% Similarity=0.053 Sum_probs=83.1
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEE
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA 83 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v 83 (207)
...|+++|.+++| ||||++.+.+..-........|. + .+ .......+.++||||.- ..+ ....+.+|++++|
T Consensus 39 ~~~i~ivG~~~~G-Kstl~~~l~~~~~~~~~~~~~g~-i--~i-~~~~~~~i~~vDtPg~~--~~~-l~~ak~aDvVllv 110 (225)
T cd01882 39 PLVVAVVGPPGVG-KTTLIKSLVKNYTKQNISDIKGP-I--TV-VTGKKRRLTFIECPNDI--NAM-IDIAKVADLVLLL 110 (225)
T ss_pred CCEEEEECCCCCC-HHHHHHHHHhhcccCcccccccc-E--EE-EecCCceEEEEeCCchH--HHH-HHHHHhcCEEEEE
Confidence 3568999999998 99999999764211111111111 1 11 11234567899999853 222 2335779999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcCCCCcE-EEEeeCCCcccCcccccCCCCCcccCHHHHHH-HHH-HhCCcEEEEeccC
Q 028595 84 FSLVSRASYENVLKKWIPELQHYSPGVPV-VLVGTKLDLREDKHYLADHPGLVPVTTAQGEE-LRK-QIGASYYIECSSK 160 (207)
Q Consensus 84 ~d~~~~~s~~~~~~~~~~~i~~~~~~~pi-ivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~-~~~-~~~~~~~~e~Sa~ 160 (207)
+|.+....... ..++..+... +.|. ++|.||.|+.+.... .. ...++++. +.. .....+++.+||+
T Consensus 111 iDa~~~~~~~~--~~i~~~l~~~--g~p~vi~VvnK~D~~~~~~~------~~-~~~~~l~~~~~~~~~~~~ki~~iSa~ 179 (225)
T cd01882 111 IDASFGFEMET--FEFLNILQVH--GFPRVMGVLTHLDLFKKNKT------LR-KTKKRLKHRFWTEVYQGAKLFYLSGI 179 (225)
T ss_pred EecCcCCCHHH--HHHHHHHHHc--CCCeEEEEEeccccCCcHHH------HH-HHHHHHHHHHHHhhCCCCcEEEEeec
Confidence 99986544433 2445555432 5675 459999998643220 00 01122222 322 2344589999999
Q ss_pred CCCC
Q 028595 161 TQQN 164 (207)
Q Consensus 161 ~~~~ 164 (207)
+.-.
T Consensus 180 ~~~~ 183 (225)
T cd01882 180 VHGR 183 (225)
T ss_pred cCCC
Confidence 8743
No 287
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.03 E-value=6.5e-10 Score=85.50 Aligned_cols=117 Identities=15% Similarity=0.069 Sum_probs=71.2
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCCc--cccCceeeeeeeEEEECCeEEEEEEEeCCCCccccc---c-------cc
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSIW--DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNR---L-------RP 71 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~---~-------~~ 71 (207)
..+|+++|..++| ||||+|++++..... .+.++...........++ ..+.+|||||-..... . ..
T Consensus 31 ~~~IllvG~tGvG-KSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g--~~i~vIDTPGl~~~~~~~~~~~~~~~~I~ 107 (249)
T cd01853 31 SLTILVLGKTGVG-KSSTINSIFGERKAATSAFQSETLRVREVSGTVDG--FKLNIIDTPGLLESVMDQRVNRKILSSIK 107 (249)
T ss_pred CeEEEEECCCCCc-HHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCcCcchhhHHHHHHHHHHHH
Confidence 5799999999999 999999999876432 222222222222333444 5689999999654311 0 12
Q ss_pred ceec--CCcEEEEEEeCCCh-hhHHHHHHHHHHHHhhcC-C--CCcEEEEeeCCCcccCc
Q 028595 72 LSYR--GADVFVLAFSLVSR-ASYENVLKKWIPELQHYS-P--GVPVVLVGTKLDLREDK 125 (207)
Q Consensus 72 ~~~~--~~d~~i~v~d~~~~-~s~~~~~~~~~~~i~~~~-~--~~piivv~nK~D~~~~~ 125 (207)
.++. ..|++++|..++.. ....+ ...++.|.... + -.++++|.||+|.....
T Consensus 108 ~~l~~~~idvIL~V~rlD~~r~~~~d--~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p~ 165 (249)
T cd01853 108 RYLKKKTPDVVLYVDRLDMYRRDYLD--LPLLRAITDSFGPSIWRNAIVVLTHAASSPPD 165 (249)
T ss_pred HHHhccCCCEEEEEEcCCCCCCCHHH--HHHHHHHHHHhChhhHhCEEEEEeCCccCCCC
Confidence 2333 46888888766542 22222 23444444322 1 25799999999986543
No 288
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=99.02 E-value=5.5e-09 Score=86.78 Aligned_cols=168 Identities=19% Similarity=0.261 Sum_probs=113.5
Q ss_pred eeEEEEecccccceeeeeeeccCCCCCccccCceeeeeee-EEEECC--eEEEEEEEeCCCCccccccccceecC----C
Q 028595 5 AKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSA-NVVAEG--TTVNLGLWDTAGQEDYNRLRPLSYRG----A 77 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~--~~~~l~i~D~~G~~~~~~~~~~~~~~----~ 77 (207)
..|+|+|+.++| |||||.+|.+. +++.++.+..|.. .+.-++ ....+.+|-..|...+..+.+..+.. -
T Consensus 26 k~vlvlG~~~~G-Kttli~~L~~~---e~~~~~~aLeYty~~v~d~~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~~ 101 (472)
T PF05783_consen 26 KSVLVLGDKGSG-KTTLIARLQGI---EDPKKGLALEYTYLDVKDEDRDDLARLNVWELDGDPSHSDLLKFALTPENLPN 101 (472)
T ss_pred ceEEEEeCCCCc-hHHHHHHhhcc---CCCCCCcccceEEEeeccCcCCcCceeeEEEcCCCcchHhHhcccCCcccccc
Confidence 579999999999 99999998654 3566777877755 332221 23578999998876666665544432 2
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHhh--------------------------------c-----------C-------
Q 028595 78 DVFVLAFSLVSRASYENVLKKWIPELQH--------------------------------Y-----------S------- 107 (207)
Q Consensus 78 d~~i~v~d~~~~~s~~~~~~~~~~~i~~--------------------------------~-----------~------- 107 (207)
-++++|.|++.|..+.+-+..|+..+++ . .
T Consensus 102 t~vvIvlDlS~PW~~~esL~~W~~vl~~~i~~L~~~~e~~~e~~~kl~~~~q~Y~ep~~~~~~~s~~~~~~~~~~~~~~~ 181 (472)
T PF05783_consen 102 TLVVIVLDLSKPWNIMESLEKWLSVLREHIEKLKSDPEEREELRQKLERQWQEYVEPGDSSDSGSPNRRSPSSSSSDDES 181 (472)
T ss_pred eEEEEEecCCChHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHhhhccccccccCccccccccccccccc
Confidence 4899999999987665433444433321 0 0
Q ss_pred ---C----------CCcEEEEeeCCCcccC----cccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCCCCCHHHHHH
Q 028595 108 ---P----------GVPVVLVGTKLDLRED----KHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFD 170 (207)
Q Consensus 108 ---~----------~~piivv~nK~D~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~ 170 (207)
| ++|++||++|+|.... ..+ ..........-.+.+|-.+|. -.+.||++...+++-+++
T Consensus 182 ~~lpl~~g~l~~nlGipi~VV~tksD~~~~Lek~~~~---~~e~~DfIqq~LR~~cL~yGA-sL~yts~~~~~n~~~L~~ 257 (472)
T PF05783_consen 182 VLLPLGEGVLTENLGIPIVVVCTKSDKIETLEKETDW---KEEHFDFIQQYLRTFCLKYGA-SLIYTSVKEEKNLDLLYK 257 (472)
T ss_pred ccCCCCCcccccccCcceEEEEecccHHHHHhhhccc---chhhHHHHHHHHHHHHHhcCC-eEEEeeccccccHHHHHH
Confidence 0 2799999999996431 110 000011123447888888998 778899999999999999
Q ss_pred HHHHHHhCCC
Q 028595 171 AAIKVVIKPP 180 (207)
Q Consensus 171 ~i~~~~~~~~ 180 (207)
.|...+...+
T Consensus 258 yi~h~l~~~~ 267 (472)
T PF05783_consen 258 YILHRLYGFP 267 (472)
T ss_pred HHHHHhccCC
Confidence 9998887543
No 289
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.02 E-value=1.1e-09 Score=81.11 Aligned_cols=95 Identities=20% Similarity=0.204 Sum_probs=67.2
Q ss_pred ccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHH
Q 028595 66 YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEEL 145 (207)
Q Consensus 66 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~ 145 (207)
++.++..+++++|++++|+|+++...... ..+.....+.|+++|+||+|+.+... ..+..+.+
T Consensus 24 ~~~~l~~~~~~ad~il~VvD~~~~~~~~~------~~l~~~~~~~~~ilV~NK~Dl~~~~~-----------~~~~~~~~ 86 (190)
T cd01855 24 ILNLLSSISPKKALVVHVVDIFDFPGSLI------PRLRLFGGNNPVILVGNKIDLLPKDK-----------NLVRIKNW 86 (190)
T ss_pred HHHHHHhcccCCcEEEEEEECccCCCccc------hhHHHhcCCCcEEEEEEchhcCCCCC-----------CHHHHHHH
Confidence 46778889999999999999988642221 11211224789999999999865432 33444444
Q ss_pred H-----HHhCC--cEEEEeccCCCCCHHHHHHHHHHHHh
Q 028595 146 R-----KQIGA--SYYIECSSKTQQNVKAVFDAAIKVVI 177 (207)
Q Consensus 146 ~-----~~~~~--~~~~e~Sa~~~~~i~~~f~~i~~~~~ 177 (207)
. +..+. .+++.+||+++.|++++++.+.+.+.
T Consensus 87 ~~~~~~~~~~~~~~~i~~vSA~~~~gi~eL~~~l~~~l~ 125 (190)
T cd01855 87 LRAKAAAGLGLKPKDVILISAKKGWGVEELINAIKKLAK 125 (190)
T ss_pred HHHHHHhhcCCCcccEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3 22332 36899999999999999999988764
No 290
>PTZ00258 GTP-binding protein; Provisional
Probab=99.01 E-value=2.5e-09 Score=86.78 Aligned_cols=83 Identities=14% Similarity=0.025 Sum_probs=53.8
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCCc-cccCceeeeeeeEEEECCe---------------EEEEEEEeCCCCccc-
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSIW-DYIPTVFDNFSANVVAEGT---------------TVNLGLWDTAGQEDY- 66 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~---------------~~~l~i~D~~G~~~~- 66 (207)
-.+|+++|.+|+| ||||+|++++.+... .|..|.-+.....+.+.+. ..++.+.||||-..-
T Consensus 21 ~~kvgIVG~PNvG-KSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ga 99 (390)
T PTZ00258 21 NLKMGIVGLPNVG-KSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKGA 99 (390)
T ss_pred CcEEEEECCCCCC-hHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcCC
Confidence 3589999999999 999999998776432 3333322222223333322 235899999994321
Q ss_pred ---cccccc---eecCCcEEEEEEeCC
Q 028595 67 ---NRLRPL---SYRGADVFVLAFSLV 87 (207)
Q Consensus 67 ---~~~~~~---~~~~~d~~i~v~d~~ 87 (207)
..+... .++++|++++|.|..
T Consensus 100 ~~g~gLg~~fL~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 100 SEGEGLGNAFLSHIRAVDGIYHVVRAF 126 (390)
T ss_pred cchhHHHHHHHHHHHHCCEEEEEEeCC
Confidence 122222 356799999999974
No 291
>PRK12289 GTPase RsgA; Reviewed
Probab=98.99 E-value=3.4e-09 Score=85.27 Aligned_cols=94 Identities=19% Similarity=0.214 Sum_probs=69.1
Q ss_pred cccccccceecCCcEEEEEEeCCChh-hHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHH
Q 028595 65 DYNRLRPLSYRGADVFVLAFSLVSRA-SYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGE 143 (207)
Q Consensus 65 ~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~ 143 (207)
+-..+.+..+.++|.+++|+|+.++. +...+ ..|+..+.. .++|+++|+||+|+.+... .....
T Consensus 78 R~~~L~R~~~aNvD~vLlV~d~~~p~~~~~~L-dR~L~~a~~--~~ip~ILVlNK~DLv~~~~------------~~~~~ 142 (352)
T PRK12289 78 RKTELDRPPVANADQILLVFALAEPPLDPWQL-SRFLVKAES--TGLEIVLCLNKADLVSPTE------------QQQWQ 142 (352)
T ss_pred cccceechhhhcCCEEEEEEECCCCCCCHHHH-HHHHHHHHH--CCCCEEEEEEchhcCChHH------------HHHHH
Confidence 33445566789999999999999876 44444 677766543 4899999999999964321 12223
Q ss_pred HHHHHhCCcEEEEeccCCCCCHHHHHHHHHH
Q 028595 144 ELRKQIGASYYIECSSKTQQNVKAVFDAAIK 174 (207)
Q Consensus 144 ~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i~~ 174 (207)
...+.+|+ +++.+||.++.|++++++.+..
T Consensus 143 ~~~~~~g~-~v~~iSA~tg~GI~eL~~~L~~ 172 (352)
T PRK12289 143 DRLQQWGY-QPLFISVETGIGLEALLEQLRN 172 (352)
T ss_pred HHHHhcCC-eEEEEEcCCCCCHHHHhhhhcc
Confidence 33356787 8899999999999999998854
No 292
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.99 E-value=1.1e-09 Score=78.43 Aligned_cols=94 Identities=15% Similarity=0.105 Sum_probs=65.6
Q ss_pred cccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHH
Q 028595 67 NRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELR 146 (207)
Q Consensus 67 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~ 146 (207)
+.+.++.++++|++++|+|++++....+. .+...+.. .+.|+++|+||+|+.+... ......+.
T Consensus 3 ~~~~~~i~~~aD~vl~V~D~~~~~~~~~~--~l~~~~~~--~~~p~iiv~NK~Dl~~~~~------------~~~~~~~~ 66 (156)
T cd01859 3 KRLVRRIIKESDVVLEVLDARDPELTRSR--KLERYVLE--LGKKLLIVLNKADLVPKEV------------LEKWKSIK 66 (156)
T ss_pred HHHHHHHHhhCCEEEEEeeCCCCcccCCH--HHHHHHHh--CCCcEEEEEEhHHhCCHHH------------HHHHHHHH
Confidence 44567788889999999999886543332 23333322 3689999999999853321 11222344
Q ss_pred HHhCCcEEEEeccCCCCCHHHHHHHHHHHHh
Q 028595 147 KQIGASYYIECSSKTQQNVKAVFDAAIKVVI 177 (207)
Q Consensus 147 ~~~~~~~~~e~Sa~~~~~i~~~f~~i~~~~~ 177 (207)
+..+. +++.+||+++.|++++++.+.+.+.
T Consensus 67 ~~~~~-~~~~iSa~~~~gi~~L~~~l~~~~~ 96 (156)
T cd01859 67 ESEGI-PVVYVSAKERLGTKILRRTIKELAK 96 (156)
T ss_pred HhCCC-cEEEEEccccccHHHHHHHHHHHHh
Confidence 44555 7899999999999999999988765
No 293
>KOG3905 consensus Dynein light intermediate chain [Cell motility]
Probab=98.98 E-value=5.4e-09 Score=81.30 Aligned_cols=166 Identities=16% Similarity=0.198 Sum_probs=112.3
Q ss_pred eeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEEC---CeEEEEEEEeCCCCccccccccceecCC----
Q 028595 5 AKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAE---GTTVNLGLWDTAGQEDYNRLRPLSYRGA---- 77 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~---~~~~~l~i~D~~G~~~~~~~~~~~~~~~---- 77 (207)
..|+++|+.++| |||||.+|-+-. .+.+.-|..|..--..+ +....+.+|=..|..--.++....+...
T Consensus 53 k~VlvlGdn~sG-KtsLi~klqg~e---~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDGd~~h~~LLk~al~ats~ae 128 (473)
T KOG3905|consen 53 KNVLVLGDNGSG-KTSLISKLQGSE---TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDGDLYHKGLLKFALPATSLAE 128 (473)
T ss_pred CeEEEEccCCCc-hhHHHHHhhccc---ccCCCCCcceEEEecccccchhhhhcceEEecCchhhhhHHhhcccccCccc
Confidence 578999999999 999999986654 44455555554422222 2245677888877654444444443322
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHhh-------------------------cC-------------------------
Q 028595 78 DVFVLAFSLVSRASYENVLKKWIPELQH-------------------------YS------------------------- 107 (207)
Q Consensus 78 d~~i~v~d~~~~~s~~~~~~~~~~~i~~-------------------------~~------------------------- 107 (207)
-.+|++.|++++..+.+-...|...+.+ +.
T Consensus 129 tlviltasms~Pw~~lesLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~t~~~~~~de~~ 208 (473)
T KOG3905|consen 129 TLVILTASMSNPWTLLESLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRTTVVGSSADEHV 208 (473)
T ss_pred eEEEEEEecCCcHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCcccccccccCcccccc
Confidence 4899999999996655554777665542 00
Q ss_pred ------------CCCcEEEEeeCCCcc----cCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCCCCCHHHHHHH
Q 028595 108 ------------PGVPVVLVGTKLDLR----EDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDA 171 (207)
Q Consensus 108 ------------~~~piivv~nK~D~~----~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~ 171 (207)
=++|++||.+|+|.. ...+. ...-.......++.||-++|. -.+.+|++...|++-++..
T Consensus 209 llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~ey---rDehfdfiq~~lRkFCLr~Ga-aLiyTSvKE~KNidllyKY 284 (473)
T KOG3905|consen 209 LLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEY---RDEHFDFIQSHLRKFCLRYGA-ALIYTSVKETKNIDLLYKY 284 (473)
T ss_pred ccccCCcchhhcCCCcEEEEEeccchhhHhhhcchh---hHHHHHHHHHHHHHHHHHcCc-eeEEeecccccchHHHHHH
Confidence 017999999999973 21110 000111233558889999998 8899999999999999999
Q ss_pred HHHHHhC
Q 028595 172 AIKVVIK 178 (207)
Q Consensus 172 i~~~~~~ 178 (207)
|+..++-
T Consensus 285 ivhr~yG 291 (473)
T KOG3905|consen 285 IVHRSYG 291 (473)
T ss_pred HHHHhcC
Confidence 9998863
No 294
>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]
Probab=98.96 E-value=2.9e-09 Score=90.43 Aligned_cols=169 Identities=13% Similarity=0.122 Sum_probs=101.0
Q ss_pred ceeE-EEEecccccceeeeeeeccCCCCCcccc----CceeeeeeeEEEE---------CCe----EEEEEEEeCCCCcc
Q 028595 4 LAKL-ACLFATQVTSFLLYVLSVSGRSSIWDYI----PTVFDNFSANVVA---------EGT----TVNLGLWDTAGQED 65 (207)
Q Consensus 4 ~~ki-~iiG~~~~GgKssli~~l~~~~~~~~~~----~t~~~~~~~~~~~---------~~~----~~~l~i~D~~G~~~ 65 (207)
+..| ||+|--..| ||-|+..+.+.+...... ..+|.+|...-.+ +++ ---+.++||||++.
T Consensus 474 RSPIcCilGHVDTG-KTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEs 552 (1064)
T KOG1144|consen 474 RSPICCILGHVDTG-KTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHES 552 (1064)
T ss_pred CCceEEEeeccccc-chHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchh
Confidence 3444 455555566 999999998766543222 2223333111100 111 12368999999999
Q ss_pred ccccccceecCCcEEEEEEeCCCh---hhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCC---cc---
Q 028595 66 YNRLRPLSYRGADVFVLAFSLVSR---ASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGL---VP--- 136 (207)
Q Consensus 66 ~~~~~~~~~~~~d~~i~v~d~~~~---~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~---~~--- 136 (207)
|..++......||.+|+|.|+... ++.+.+ ++++. .+.|+||++||+|..-........+.. .+
T Consensus 553 FtnlRsrgsslC~~aIlvvdImhGlepqtiESi-----~lLR~--rktpFivALNKiDRLYgwk~~p~~~i~~~lkkQ~k 625 (1064)
T KOG1144|consen 553 FTNLRSRGSSLCDLAILVVDIMHGLEPQTIESI-----NLLRM--RKTPFIVALNKIDRLYGWKSCPNAPIVEALKKQKK 625 (1064)
T ss_pred hhhhhhccccccceEEEEeehhccCCcchhHHH-----HHHHh--cCCCeEEeehhhhhhcccccCCCchHHHHHHHhhH
Confidence 999999999999999999999864 444443 33333 389999999999974322110000000 00
Q ss_pred -cC------HHH-HHHHHHH-hC------------CcEEEEeccCCCCCHHHHHHHHHHHHhCCC
Q 028595 137 -VT------TAQ-GEELRKQ-IG------------ASYYIECSSKTQQNVKAVFDAAIKVVIKPP 180 (207)
Q Consensus 137 -v~------~~~-~~~~~~~-~~------------~~~~~e~Sa~~~~~i~~~f~~i~~~~~~~~ 180 (207)
+. ... .-+|++. ++ +..++++||.+|+||-+++.+|++......
T Consensus 626 ~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~m 690 (1064)
T KOG1144|consen 626 DVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKTM 690 (1064)
T ss_pred HHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHHH
Confidence 00 000 1112111 11 124567999999999999999998876543
No 295
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=98.91 E-value=2.8e-08 Score=79.85 Aligned_cols=82 Identities=13% Similarity=0.030 Sum_probs=53.4
Q ss_pred eeEEEEecccccceeeeeeeccCCCCC-ccccCceeeeeeeEEEECCe---------------EEEEEEEeCCCCccc--
Q 028595 5 AKLACLFATQVTSFLLYVLSVSGRSSI-WDYIPTVFDNFSANVVAEGT---------------TVNLGLWDTAGQEDY-- 66 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~---------------~~~l~i~D~~G~~~~-- 66 (207)
.+|+++|.+|+| ||||+|++++.+.. ..|..|+-+.....+.+.+. ...+.+.|+||-..-
T Consensus 3 ~~vgIVG~PNvG-KSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~ 81 (364)
T PRK09601 3 LKCGIVGLPNVG-KSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGAS 81 (364)
T ss_pred cEEEEECCCCCC-HHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCC
Confidence 589999999999 99999999987732 23333322222223333331 135899999994321
Q ss_pred --cccccc---eecCCcEEEEEEeCC
Q 028595 67 --NRLRPL---SYRGADVFVLAFSLV 87 (207)
Q Consensus 67 --~~~~~~---~~~~~d~~i~v~d~~ 87 (207)
..+... .++.+|++++|+|..
T Consensus 82 ~g~glg~~fL~~i~~aD~li~VVd~f 107 (364)
T PRK09601 82 KGEGLGNQFLANIREVDAIVHVVRCF 107 (364)
T ss_pred hHHHHHHHHHHHHHhCCEEEEEEeCC
Confidence 122222 356899999999974
No 296
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=98.91 E-value=5.2e-09 Score=78.86 Aligned_cols=163 Identities=19% Similarity=0.138 Sum_probs=92.3
Q ss_pred eeEEEEecccccceeeeeeeccCCCCCcccc--Cceeeee-eeEEEECCeEEEEEEEeCCCCcccccc-------c----
Q 028595 5 AKLACLFATQVTSFLLYVLSVSGRSSIWDYI--PTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRL-------R---- 70 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~~~~~~~~~--~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~-------~---- 70 (207)
.+|+++|..++| |||++|.+++........ ....... .....++| ..+.++||||--..... .
T Consensus 1 l~IlllG~tGsG-KSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g--~~v~VIDTPGl~d~~~~~~~~~~~i~~~l 77 (212)
T PF04548_consen 1 LRILLLGKTGSG-KSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDG--RQVTVIDTPGLFDSDGSDEEIIREIKRCL 77 (212)
T ss_dssp EEEEEECSTTSS-HHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETT--EEEEEEE--SSEETTEEHHHHHHHHHHHH
T ss_pred CEEEEECCCCCC-HHHHHHHHhcccceeeccccCCcccccceeeeeecc--eEEEEEeCCCCCCCcccHHHHHHHHHHHH
Confidence 379999999999 999999999887533221 1111112 33446677 55789999994322110 0
Q ss_pred cceecCCcEEEEEEeCCChhhHHHH--HHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccC---HHHHHHH
Q 028595 71 PLSYRGADVFVLAFSLVSRASYENV--LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVT---TAQGEEL 145 (207)
Q Consensus 71 ~~~~~~~d~~i~v~d~~~~~s~~~~--~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~---~~~~~~~ 145 (207)
.....+.+++++|+.+. +-+..+. ...+...+... --..++|+.|..|....... .+ -+. ....+.+
T Consensus 78 ~~~~~g~ha~llVi~~~-r~t~~~~~~l~~l~~~FG~~-~~k~~ivvfT~~d~~~~~~~-~~-----~l~~~~~~~l~~l 149 (212)
T PF04548_consen 78 SLCSPGPHAFLLVIPLG-RFTEEDREVLELLQEIFGEE-IWKHTIVVFTHADELEDDSL-ED-----YLKKESNEALQEL 149 (212)
T ss_dssp HHTTT-ESEEEEEEETT-B-SHHHHHHHHHHHHHHCGG-GGGGEEEEEEEGGGGTTTTH-HH-----HHHHHHHHHHHHH
T ss_pred HhccCCCeEEEEEEecC-cchHHHHHHHHHHHHHccHH-HHhHhhHHhhhccccccccH-HH-----HHhccCchhHhHH
Confidence 11235689999999988 3332222 12223333211 12468889998886654321 00 001 1235677
Q ss_pred HHHhCCcEEEEeccC------CCCCHHHHHHHHHHHHhCC
Q 028595 146 RKQIGASYYIECSSK------TQQNVKAVFDAAIKVVIKP 179 (207)
Q Consensus 146 ~~~~~~~~~~e~Sa~------~~~~i~~~f~~i~~~~~~~ 179 (207)
.+..+. .|+.++.. ....+.+++..+-+.+...
T Consensus 150 i~~c~~-R~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~n 188 (212)
T PF04548_consen 150 IEKCGG-RYHVFNNKTKDKEKDESQVSELLEKIEEMVQEN 188 (212)
T ss_dssp HHHTTT-CEEECCTTHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhcCC-EEEEEeccccchhhhHHHHHHHHHHHHHHHHHc
Confidence 777887 77877776 2346777777777666544
No 297
>PRK07560 elongation factor EF-2; Reviewed
Probab=98.91 E-value=5.4e-09 Score=92.09 Aligned_cols=115 Identities=16% Similarity=0.047 Sum_probs=77.0
Q ss_pred cceeEEEEecccccceeeeeeeccCCC--CCc---------cccC-------ceeeee-eeEEEECCeEEEEEEEeCCCC
Q 028595 3 LLAKLACLFATQVTSFLLYVLSVSGRS--SIW---------DYIP-------TVFDNF-SANVVAEGTTVNLGLWDTAGQ 63 (207)
Q Consensus 3 ~~~ki~iiG~~~~GgKssli~~l~~~~--~~~---------~~~~-------t~~~~~-~~~~~~~~~~~~l~i~D~~G~ 63 (207)
...+|+++|..++| ||||+.+++... ... ++.+ |+.... ......++..+.+.++||||+
T Consensus 19 ~iRni~iigh~d~G-KTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~ 97 (731)
T PRK07560 19 QIRNIGIIAHIDHG-KTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGH 97 (731)
T ss_pred cccEEEEEEeCCCC-HHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCc
Confidence 35689999999999 999999997421 111 0101 000000 011122445788999999999
Q ss_pred ccccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcc
Q 028595 64 EDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLR 122 (207)
Q Consensus 64 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~ 122 (207)
.+|.......+..+|++++|+|.......+.. ..|. ..... +.|.+++.||+|+.
T Consensus 98 ~df~~~~~~~l~~~D~avlVvda~~g~~~~t~-~~~~-~~~~~--~~~~iv~iNK~D~~ 152 (731)
T PRK07560 98 VDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTE-TVLR-QALRE--RVKPVLFINKVDRL 152 (731)
T ss_pred cChHHHHHHHHHhcCEEEEEEECCCCCCccHH-HHHH-HHHHc--CCCeEEEEECchhh
Confidence 99887778888999999999998876444433 3333 22222 56789999999976
No 298
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=98.90 E-value=1.3e-08 Score=79.92 Aligned_cols=154 Identities=17% Similarity=0.100 Sum_probs=95.8
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCC--c--------cc--cCceeeeeeeEEEEC--------------------Ce
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSI--W--------DY--IPTVFDNFSANVVAE--------------------GT 51 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~--~--------~~--~~t~~~~~~~~~~~~--------------------~~ 51 (207)
..+.+.+|.-.-| |||||-||+...-. + .. ..|.|+.+...+.+| -.
T Consensus 6 lLRfiTcGSVDDG-KSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT~ 84 (431)
T COG2895 6 LLRFITCGSVDDG-KSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFSTE 84 (431)
T ss_pred ceeEEEeccccCc-chhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecccc
Confidence 4678899999999 99999999854311 1 00 122221111111111 12
Q ss_pred EEEEEEEeCCCCccccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCC
Q 028595 52 TVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADH 131 (207)
Q Consensus 52 ~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~ 131 (207)
.-++.+-||||++.|...--.=..-||+.|++.|+...-.-+.-.+.++..+- .=..++++.||+||.+..+.
T Consensus 85 KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I~sLL---GIrhvvvAVNKmDLvdy~e~---- 157 (431)
T COG2895 85 KRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGVLEQTRRHSFIASLL---GIRHVVVAVNKMDLVDYSEE---- 157 (431)
T ss_pred cceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhhHHHhHHHHHHHHHh---CCcEEEEEEeeecccccCHH----
Confidence 34678999999999865333334558999999998653332222222333322 23678999999999886542
Q ss_pred CCCcccCHHHHHHHHHHhCC--cEEEEeccCCCCCHHH
Q 028595 132 PGLVPVTTAQGEELRKQIGA--SYYIECSSKTQQNVKA 167 (207)
Q Consensus 132 ~~~~~v~~~~~~~~~~~~~~--~~~~e~Sa~~~~~i~~ 167 (207)
...-..++-..|+..++. ..++++||..|+|+-.
T Consensus 158 --~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~~ 193 (431)
T COG2895 158 --VFEAIVADYLAFAAQLGLKDVRFIPISALLGDNVVS 193 (431)
T ss_pred --HHHHHHHHHHHHHHHcCCCcceEEechhccCCcccc
Confidence 000133556678888875 3588999999998753
No 299
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=98.90 E-value=1.1e-09 Score=97.66 Aligned_cols=115 Identities=12% Similarity=0.074 Sum_probs=78.6
Q ss_pred cceeEEEEecccccceeeeeeeccCCCC--Cc---------cccCce---eeeee---eEEE--------------ECCe
Q 028595 3 LLAKLACLFATQVTSFLLYVLSVSGRSS--IW---------DYIPTV---FDNFS---ANVV--------------AEGT 51 (207)
Q Consensus 3 ~~~ki~iiG~~~~GgKssli~~l~~~~~--~~---------~~~~t~---~~~~~---~~~~--------------~~~~ 51 (207)
...+|+++|..++| ||||+.+++...- .. ++.+.- +.++. ..+. .++.
T Consensus 18 ~Irni~iiGhvd~G-KTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (843)
T PLN00116 18 NIRNMSVIAHVDHG-KSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGN 96 (843)
T ss_pred CccEEEEEcCCCCC-HHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCCC
Confidence 45699999999999 9999999874321 10 011100 00010 0111 1223
Q ss_pred EEEEEEEeCCCCccccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcc
Q 028595 52 TVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLR 122 (207)
Q Consensus 52 ~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~ 122 (207)
.+.++++||||+.+|-......++.+|++|+|.|+.+.-..... ..|..... .++|++++.||+|..
T Consensus 97 ~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~-~~~~~~~~---~~~p~i~~iNK~D~~ 163 (843)
T PLN00116 97 EYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTE-TVLRQALG---ERIRPVLTVNKMDRC 163 (843)
T ss_pred ceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHH-HHHHHHHH---CCCCEEEEEECCccc
Confidence 67889999999999987777888899999999999987555543 33433332 279999999999987
No 300
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.90 E-value=1.2e-08 Score=81.77 Aligned_cols=157 Identities=14% Similarity=-0.002 Sum_probs=93.3
Q ss_pred ceeEEEEecccccceeeeeeeccCCC--CCcc----------------------ccCce-----eeeeee-EEEECCeEE
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRS--SIWD----------------------YIPTV-----FDNFSA-NVVAEGTTV 53 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~--~~~~----------------------~~~t~-----~~~~~~-~~~~~~~~~ 53 (207)
..+++++|.-.+| ||||+-+|+..- ++.. .+.|- |.+... ........+
T Consensus 7 h~nl~~iGHVD~G-KSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k~ 85 (428)
T COG5256 7 HLNLVFIGHVDAG-KSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDKY 85 (428)
T ss_pred ceEEEEEcCCCCC-chhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCCc
Confidence 4689999999999 999999987432 2210 00111 111111 111122346
Q ss_pred EEEEEeCCCCccccccccceecCCcEEEEEEeCCChhhHHH-----HHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccc
Q 028595 54 NLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYEN-----VLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYL 128 (207)
Q Consensus 54 ~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~-----~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~ 128 (207)
.+.|.|+||+..|-...-.-...||+.|+|.|.++.+.-.. ......-+.... .-..++++.||.|+.+-++.
T Consensus 86 ~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tl-Gi~~lIVavNKMD~v~wde~- 163 (428)
T COG5256 86 NFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTL-GIKQLIVAVNKMDLVSWDEE- 163 (428)
T ss_pred eEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhc-CCceEEEEEEcccccccCHH-
Confidence 78999999988776544444566899999999998631111 001111111111 13458999999999864321
Q ss_pred cCCCCCcccCHHHHHHHHHHhCCc----EEEEeccCCCCCHHHH
Q 028595 129 ADHPGLVPVTTAQGEELRKQIGAS----YYIECSSKTQQNVKAV 168 (207)
Q Consensus 129 ~~~~~~~~v~~~~~~~~~~~~~~~----~~~e~Sa~~~~~i~~~ 168 (207)
....-..+...+.+..|+. +|+++|+..|.|+.+.
T Consensus 164 -----rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~~ 202 (428)
T COG5256 164 -----RFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTKK 202 (428)
T ss_pred -----HHHHHHHHHHHHHHHcCCCccCCeEEecccccCCccccc
Confidence 0001223445566666653 5999999999998653
No 301
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=98.90 E-value=1.1e-08 Score=76.86 Aligned_cols=102 Identities=17% Similarity=0.092 Sum_probs=61.0
Q ss_pred EEEEEEeCCCCccccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCC
Q 028595 53 VNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHP 132 (207)
Q Consensus 53 ~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~ 132 (207)
..+.+.++.|.-... ..+....+..+.|.|+.+.+.... .....+ ..|.++++||+|+.+....
T Consensus 103 ~d~IiIEt~G~l~~~---~~~~~~~~~~i~Vvd~~~~d~~~~---~~~~~~-----~~a~iiv~NK~Dl~~~~~~----- 166 (207)
T TIGR00073 103 IDLLFIENVGNLVCP---ADFDLGEHMRVVLLSVTEGDDKPL---KYPGMF-----KEADLIVINKADLAEAVGF----- 166 (207)
T ss_pred CCEEEEecCCCcCCC---cccccccCeEEEEEecCcccchhh---hhHhHH-----hhCCEEEEEHHHccccchh-----
Confidence 355677777721100 111123456667788775433211 111111 4678999999999754221
Q ss_pred CCcccCHHHHHHHHHHhC-CcEEEEeccCCCCCHHHHHHHHHHH
Q 028595 133 GLVPVTTAQGEELRKQIG-ASYYIECSSKTQQNVKAVFDAAIKV 175 (207)
Q Consensus 133 ~~~~v~~~~~~~~~~~~~-~~~~~e~Sa~~~~~i~~~f~~i~~~ 175 (207)
......+..+..+ ..+++++||+++.|++++|+++.+.
T Consensus 167 -----~~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~ 205 (207)
T TIGR00073 167 -----DVEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ 205 (207)
T ss_pred -----hHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 2344444444443 3489999999999999999999764
No 302
>PTZ00416 elongation factor 2; Provisional
Probab=98.90 E-value=2e-09 Score=95.87 Aligned_cols=115 Identities=12% Similarity=0.048 Sum_probs=77.5
Q ss_pred cceeEEEEecccccceeeeeeeccCCC--CCc---------cccCce---eeee---eeEEEEC--------CeEEEEEE
Q 028595 3 LLAKLACLFATQVTSFLLYVLSVSGRS--SIW---------DYIPTV---FDNF---SANVVAE--------GTTVNLGL 57 (207)
Q Consensus 3 ~~~ki~iiG~~~~GgKssli~~l~~~~--~~~---------~~~~t~---~~~~---~~~~~~~--------~~~~~l~i 57 (207)
...+|+++|..++| ||||+.+|+... ... ++.+.- +.+. ...+..+ ++.+.+.+
T Consensus 18 ~irni~iiGh~d~G-KTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~l 96 (836)
T PTZ00416 18 QIRNMSVIAHVDHG-KSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINL 96 (836)
T ss_pred CcCEEEEECCCCCC-HHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEE
Confidence 45699999999999 999999997531 110 000000 0000 0011111 23577999
Q ss_pred EeCCCCccccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcc
Q 028595 58 WDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLR 122 (207)
Q Consensus 58 ~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~ 122 (207)
+||||+.++.......++.+|++|+|.|..+.-..+.. ..| ..+.. .++|++++.||+|+.
T Consensus 97 iDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~-~~~-~~~~~--~~~p~iv~iNK~D~~ 157 (836)
T PTZ00416 97 IDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTE-TVL-RQALQ--ERIRPVLFINKVDRA 157 (836)
T ss_pred EcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHH-HHH-HHHHH--cCCCEEEEEEChhhh
Confidence 99999998877778888999999999999886554443 333 33333 268999999999986
No 303
>PRK12288 GTPase RsgA; Reviewed
Probab=98.88 E-value=1.9e-08 Score=80.99 Aligned_cols=90 Identities=17% Similarity=0.229 Sum_probs=68.5
Q ss_pred eecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCc
Q 028595 73 SYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGAS 152 (207)
Q Consensus 73 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 152 (207)
...|+|.+++|++++...++..+ ..|+..+.. .++|+++|+||+|+.+.... ....+.....+.+++
T Consensus 117 iaANvD~vlIV~s~~p~~s~~~L-dr~L~~a~~--~~i~~VIVlNK~DL~~~~~~---------~~~~~~~~~y~~~g~- 183 (347)
T PRK12288 117 IAANIDQIVIVSAVLPELSLNII-DRYLVACET--LGIEPLIVLNKIDLLDDEGR---------AFVNEQLDIYRNIGY- 183 (347)
T ss_pred EEEEccEEEEEEeCCCCCCHHHH-HHHHHHHHh--cCCCEEEEEECccCCCcHHH---------HHHHHHHHHHHhCCC-
Confidence 35789999999999988888887 788776653 47999999999999654310 012233334456777
Q ss_pred EEEEeccCCCCCHHHHHHHHHHH
Q 028595 153 YYIECSSKTQQNVKAVFDAAIKV 175 (207)
Q Consensus 153 ~~~e~Sa~~~~~i~~~f~~i~~~ 175 (207)
+++++||+++.|++++++.+...
T Consensus 184 ~v~~vSA~tg~GideL~~~L~~k 206 (347)
T PRK12288 184 RVLMVSSHTGEGLEELEAALTGR 206 (347)
T ss_pred eEEEEeCCCCcCHHHHHHHHhhC
Confidence 89999999999999999988653
No 304
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=98.86 E-value=3.2e-09 Score=76.86 Aligned_cols=63 Identities=19% Similarity=0.151 Sum_probs=45.0
Q ss_pred EEEEEeCCCCcc----ccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCC
Q 028595 54 NLGLWDTAGQED----YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKL 119 (207)
Q Consensus 54 ~l~i~D~~G~~~----~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~ 119 (207)
.+.|+||||-.. ...++..|+..+|++|+|.+.++..+-.+. ..+....... ...+++|.||+
T Consensus 102 ~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~-~~l~~~~~~~--~~~~i~V~nk~ 168 (168)
T PF00350_consen 102 NLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDM-EFLKQMLDPD--KSRTIFVLNKA 168 (168)
T ss_dssp SEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHH-HHHHHHHTTT--CSSEEEEEE-G
T ss_pred ceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHH-HHHHHHhcCC--CCeEEEEEcCC
Confidence 467999999532 235677888999999999999997666655 5555555443 33488999984
No 305
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=98.85 E-value=6.3e-09 Score=83.68 Aligned_cols=167 Identities=16% Similarity=0.069 Sum_probs=83.4
Q ss_pred cceeEEEEecccccceeeeeeeccCCCCCc-cccCcee--eeee-eEEEECCeEEEEEEEeCCCCccccccccc-----e
Q 028595 3 LLAKLACLFATQVTSFLLYVLSVSGRSSIW-DYIPTVF--DNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPL-----S 73 (207)
Q Consensus 3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~-~~~~t~~--~~~~-~~~~~~~~~~~l~i~D~~G~~~~~~~~~~-----~ 73 (207)
...+|+|+|.+++| ||||||.|.+-.-.+ ...+|.. .+.. ..+... ..-.+.+||+||-.....-... -
T Consensus 34 ~~l~IaV~G~sGsG-KSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p-~~pnv~lWDlPG~gt~~f~~~~Yl~~~~ 111 (376)
T PF05049_consen 34 APLNIAVTGESGSG-KSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHP-KFPNVTLWDLPGIGTPNFPPEEYLKEVK 111 (376)
T ss_dssp --EEEEEEESTTSS-HHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-S-S-TTEEEEEE--GGGSS--HHHHHHHTT
T ss_pred CceEEEEECCCCCC-HHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCC-CCCCCeEEeCCCCCCCCCCHHHHHHHcc
Confidence 36799999999999 999999997643322 2222211 1111 122222 2224789999995432222222 2
Q ss_pred ecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCH----HHHHHHHHH-
Q 028595 74 YRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTT----AQGEELRKQ- 148 (207)
Q Consensus 74 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~----~~~~~~~~~- 148 (207)
+..-|.+|++.+-. -+..++ .+...+.+. +.|+++|-+|+|..-..+. ...++.... ++.++.+..
T Consensus 112 ~~~yD~fiii~s~r--f~~ndv--~La~~i~~~--gK~fyfVRTKvD~Dl~~~~---~~~p~~f~~e~~L~~IR~~c~~~ 182 (376)
T PF05049_consen 112 FYRYDFFIIISSER--FTENDV--QLAKEIQRM--GKKFYFVRTKVDSDLYNER---RRKPRTFNEEKLLQEIRENCLEN 182 (376)
T ss_dssp GGG-SEEEEEESSS----HHHH--HHHHHHHHT--T-EEEEEE--HHHHHHHHH---CC-STT--HHTHHHHHHHHHHHH
T ss_pred ccccCEEEEEeCCC--CchhhH--HHHHHHHHc--CCcEEEEEecccccHhhhh---ccCCcccCHHHHHHHHHHHHHHH
Confidence 44579888887742 233332 455666654 8999999999996211100 000111122 223333322
Q ss_pred ---hC--CcEEEEeccCC--CCCHHHHHHHHHHHHhCCC
Q 028595 149 ---IG--ASYYIECSSKT--QQNVKAVFDAAIKVVIKPP 180 (207)
Q Consensus 149 ---~~--~~~~~e~Sa~~--~~~i~~~f~~i~~~~~~~~ 180 (207)
.| .++.|-+|+.+ ..++..+.+.+.+.+..++
T Consensus 183 L~k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~dLp~~K 221 (376)
T PF05049_consen 183 LQKAGVSEPQVFLVSSFDLSKYDFPKLEETLEKDLPAHK 221 (376)
T ss_dssp HHCTT-SS--EEEB-TTTTTSTTHHHHHHHHHHHS-GGG
T ss_pred HHHcCCCcCceEEEeCCCcccCChHHHHHHHHHHhHHHH
Confidence 23 24788888886 3568888888888877654
No 306
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.83 E-value=8.5e-09 Score=83.64 Aligned_cols=96 Identities=24% Similarity=0.357 Sum_probs=70.3
Q ss_pred CccccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHH
Q 028595 63 QEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQG 142 (207)
Q Consensus 63 ~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~ 142 (207)
++.|+.+...+..+++++++|+|+.+... .|.+.+.+...+.|+++|+||+|+.+... ..+.+
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~~------s~~~~l~~~~~~~piilV~NK~DLl~k~~-----------~~~~~ 112 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFEG------SLIPELKRFVGGNPVLLVGNKIDLLPKSV-----------NLSKI 112 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCCC------CccHHHHHHhCCCCEEEEEEchhhCCCCC-----------CHHHH
Confidence 56778888889999999999999977542 23333333334789999999999965331 33344
Q ss_pred H----HHHHHhCCc--EEEEeccCCCCCHHHHHHHHHHH
Q 028595 143 E----ELRKQIGAS--YYIECSSKTQQNVKAVFDAAIKV 175 (207)
Q Consensus 143 ~----~~~~~~~~~--~~~e~Sa~~~~~i~~~f~~i~~~ 175 (207)
. ++++.+++. .++.+||+++.|++++|+.+.+.
T Consensus 113 ~~~l~~~~k~~g~~~~~i~~vSAk~g~gv~eL~~~l~~~ 151 (360)
T TIGR03597 113 KEWMKKRAKELGLKPVDIILVSAKKGNGIDELLDKIKKA 151 (360)
T ss_pred HHHHHHHHHHcCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence 4 346666752 48899999999999999998654
No 307
>PRK13768 GTPase; Provisional
Probab=98.83 E-value=2e-08 Score=77.70 Aligned_cols=124 Identities=19% Similarity=0.163 Sum_probs=71.6
Q ss_pred EEEEEeCCCCccc---cccccceec---C--CcEEEEEEeCCChhhHHHHH-HHHHHHHhhcCCCCcEEEEeeCCCcccC
Q 028595 54 NLGLWDTAGQEDY---NRLRPLSYR---G--ADVFVLAFSLVSRASYENVL-KKWIPELQHYSPGVPVVLVGTKLDLRED 124 (207)
Q Consensus 54 ~l~i~D~~G~~~~---~~~~~~~~~---~--~d~~i~v~d~~~~~s~~~~~-~~~~~~i~~~~~~~piivv~nK~D~~~~ 124 (207)
.+.+||+||+... +..++.+++ . ++++++|+|.+......+.. ..|+........+.|+++|+||+|+...
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~~~ 177 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLLSE 177 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhcCc
Confidence 5789999997653 333332322 2 89999999996544333321 2333322222248999999999998765
Q ss_pred ccc--ccCCCCCc-----------ccCHHHHHH---HHHHhCC-cEEEEeccCCCCCHHHHHHHHHHHHh
Q 028595 125 KHY--LADHPGLV-----------PVTTAQGEE---LRKQIGA-SYYIECSSKTQQNVKAVFDAAIKVVI 177 (207)
Q Consensus 125 ~~~--~~~~~~~~-----------~v~~~~~~~---~~~~~~~-~~~~e~Sa~~~~~i~~~f~~i~~~~~ 177 (207)
.+. ........ .......++ ..+..+. .+++++|+++++|++++.+++.+.+.
T Consensus 178 ~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~ 247 (253)
T PRK13768 178 EELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFC 247 (253)
T ss_pred hhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcC
Confidence 331 00000000 000000111 1223342 37899999999999999999987764
No 308
>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.83 E-value=2.1e-08 Score=78.66 Aligned_cols=169 Identities=18% Similarity=0.170 Sum_probs=100.6
Q ss_pred cceeEEEEecccccceeeeeeeccCCCCCc--cccCce-----eee--eeeEE------EECCeEEEEEEEeCCCCcccc
Q 028595 3 LLAKLACLFATQVTSFLLYVLSVSGRSSIW--DYIPTV-----FDN--FSANV------VAEGTTVNLGLWDTAGQEDYN 67 (207)
Q Consensus 3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~--~~~~t~-----~~~--~~~~~------~~~~~~~~l~i~D~~G~~~~~ 67 (207)
...++.++|--.+| ||+|.+++..-.... +..|+. ..+ |+... -..++..++.+.|+||+...-
T Consensus 6 ~n~N~GiLGHvDSG-KTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLI 84 (522)
T KOG0461|consen 6 SNLNLGILGHVDSG-KTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLI 84 (522)
T ss_pred ceeeeeeEeeccCc-hHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHH
Confidence 46789999999999 999999986433211 111211 111 11111 114677889999999986532
Q ss_pred ccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHH
Q 028595 68 RLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRK 147 (207)
Q Consensus 68 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~ 147 (207)
...-.-.+-.|..++|.|+.....-+.+..-.+..+- ....++|.||+|..++.+..+ ...+.+.+..+
T Consensus 85 RtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~----c~klvvvinkid~lpE~qr~s-------ki~k~~kk~~K 153 (522)
T KOG0461|consen 85 RTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELL----CKKLVVVINKIDVLPENQRAS-------KIEKSAKKVRK 153 (522)
T ss_pred HHHHhhhheeeeeeEEEehhcccccccchhhhhhhhh----ccceEEEEeccccccchhhhh-------HHHHHHHHHHH
Confidence 2111222335788999999864333333112222221 344788889999766543200 12233444444
Q ss_pred Hh------CCcEEEEeccCCC----CCHHHHHHHHHHHHhCCCcch
Q 028595 148 QI------GASYYIECSSKTQ----QNVKAVFDAAIKVVIKPPQKQ 183 (207)
Q Consensus 148 ~~------~~~~~~e~Sa~~~----~~i~~~f~~i~~~~~~~~~~~ 183 (207)
.+ |-.|++++||..| +.+.++.+.+-..+..+..+.
T Consensus 154 tLe~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P~Rd~ 199 (522)
T KOG0461|consen 154 TLESTGFDGNSPIVEVSAADGYFKEEMIQELKEALESRIFEPKRDE 199 (522)
T ss_pred HHHhcCcCCCCceeEEecCCCccchhHHHHHHHHHHHhhcCCCcCC
Confidence 33 2258999999999 778888888877777765543
No 309
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.79 E-value=5.1e-08 Score=69.95 Aligned_cols=90 Identities=14% Similarity=0.053 Sum_probs=58.3
Q ss_pred eecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCc
Q 028595 73 SYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGAS 152 (207)
Q Consensus 73 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 152 (207)
.+.++|++++|.|++++....+ ..+...+.....+.|+++|.||+|+.+... .......+.+.+..
T Consensus 5 ~l~~aD~il~VvD~~~p~~~~~--~~i~~~l~~~~~~~p~ilVlNKiDl~~~~~-----------~~~~~~~~~~~~~~- 70 (157)
T cd01858 5 VIDSSDVVIQVLDARDPMGTRC--KHVEEYLKKEKPHKHLIFVLNKCDLVPTWV-----------TARWVKILSKEYPT- 70 (157)
T ss_pred hhhhCCEEEEEEECCCCccccC--HHHHHHHHhccCCCCEEEEEEchhcCCHHH-----------HHHHHHHHhcCCcE-
Confidence 4678999999999998743322 233333333334689999999999954321 11222233322222
Q ss_pred EEEEeccCCCCCHHHHHHHHHHHH
Q 028595 153 YYIECSSKTQQNVKAVFDAAIKVV 176 (207)
Q Consensus 153 ~~~e~Sa~~~~~i~~~f~~i~~~~ 176 (207)
..+.+||+++.|++++.+.+...+
T Consensus 71 ~~~~iSa~~~~~~~~L~~~l~~~~ 94 (157)
T cd01858 71 IAFHASINNPFGKGSLIQLLRQFS 94 (157)
T ss_pred EEEEeeccccccHHHHHHHHHHHH
Confidence 246799999999999999987654
No 310
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=98.78 E-value=3.9e-08 Score=78.44 Aligned_cols=107 Identities=14% Similarity=0.101 Sum_probs=67.5
Q ss_pred EEEEEEEeCCCCccccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCC
Q 028595 52 TVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADH 131 (207)
Q Consensus 52 ~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~ 131 (207)
.+.+.+.||+|-..-... ....+|.++++.+....+..+.. .. ..+ ...-++|.||+|+.+....
T Consensus 148 g~d~viieT~Gv~qs~~~---i~~~aD~vlvv~~p~~gd~iq~~-k~--gi~-----E~aDIiVVNKaDl~~~~~a---- 212 (332)
T PRK09435 148 GYDVILVETVGVGQSETA---VAGMVDFFLLLQLPGAGDELQGI-KK--GIM-----ELADLIVINKADGDNKTAA---- 212 (332)
T ss_pred CCCEEEEECCCCccchhH---HHHhCCEEEEEecCCchHHHHHH-Hh--hhh-----hhhheEEeehhcccchhHH----
Confidence 477889999996532221 45679999999765555555544 11 111 2224899999998754320
Q ss_pred CCCcccCHHHHHHHHHHhC-----C-cEEEEeccCCCCCHHHHHHHHHHHHh
Q 028595 132 PGLVPVTTAQGEELRKQIG-----A-SYYIECSSKTQQNVKAVFDAAIKVVI 177 (207)
Q Consensus 132 ~~~~~v~~~~~~~~~~~~~-----~-~~~~e~Sa~~~~~i~~~f~~i~~~~~ 177 (207)
.-...+.+....... + .+++.+||+++.|++++++.+.+.+.
T Consensus 213 ----~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~ 260 (332)
T PRK09435 213 ----RRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRA 260 (332)
T ss_pred ----HHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 002222333322211 1 47899999999999999999998765
No 311
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=98.76 E-value=4e-10 Score=86.15 Aligned_cols=121 Identities=21% Similarity=0.182 Sum_probs=60.2
Q ss_pred EEEEEeCCCCcccccccccee--------cCCcEEEEEEeCC---ChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcc
Q 028595 54 NLGLWDTAGQEDYNRLRPLSY--------RGADVFVLAFSLV---SRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLR 122 (207)
Q Consensus 54 ~l~i~D~~G~~~~~~~~~~~~--------~~~d~~i~v~d~~---~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~ 122 (207)
...|+|||||-+....+...- ...-+++++.|.. ++..+-.. .++......+-+.|.+.|.||+|+.
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~--~L~s~s~~~~~~lP~vnvlsK~Dl~ 169 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSS--LLLSLSIMLRLELPHVNVLSKIDLL 169 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHH--HHHHHHHHHHHTSEEEEEE--GGGS
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHH--HHHHHHHHhhCCCCEEEeeeccCcc
Confidence 678999999987644433221 3456888888876 44444433 2222221111389999999999997
Q ss_pred cCcc--ccc---CCCCC-------cccCHHHHHHHHHHhCCc-EEEEeccCCCCCHHHHHHHHHHHH
Q 028595 123 EDKH--YLA---DHPGL-------VPVTTAQGEELRKQIGAS-YYIECSSKTQQNVKAVFDAAIKVV 176 (207)
Q Consensus 123 ~~~~--~~~---~~~~~-------~~v~~~~~~~~~~~~~~~-~~~e~Sa~~~~~i~~~f~~i~~~~ 176 (207)
+... .+. +.... .....+....+..+++.. .++.+|+.+++++++++..+-+.+
T Consensus 170 ~~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~ 236 (238)
T PF03029_consen 170 SKYLEFILEWFEDPDSLEDLLESDYKKLNEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN 236 (238)
T ss_dssp -HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred cchhHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence 6210 000 00000 000111222222333555 799999999999999999887654
No 312
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=98.76 E-value=2.6e-08 Score=77.46 Aligned_cols=80 Identities=11% Similarity=0.006 Sum_probs=51.4
Q ss_pred EEEEecccccceeeeeeeccCCCCCc-cccCceeeeeeeEEEECCe---------------EEEEEEEeCCCCccc----
Q 028595 7 LACLFATQVTSFLLYVLSVSGRSSIW-DYIPTVFDNFSANVVAEGT---------------TVNLGLWDTAGQEDY---- 66 (207)
Q Consensus 7 i~iiG~~~~GgKssli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~---------------~~~l~i~D~~G~~~~---- 66 (207)
|+++|.+++| ||||+|++++.+... .|..|+-+.....+.+.+. ...+.++|+||--.-
T Consensus 1 igivG~PN~G-KSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~ 79 (274)
T cd01900 1 IGIVGLPNVG-KSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKG 79 (274)
T ss_pred CeEeCCCCCc-HHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchh
Confidence 5799999999 999999999887532 2332222222233344332 235899999994321
Q ss_pred cccccce---ecCCcEEEEEEeCC
Q 028595 67 NRLRPLS---YRGADVFVLAFSLV 87 (207)
Q Consensus 67 ~~~~~~~---~~~~d~~i~v~d~~ 87 (207)
..+...+ ++++|++++|+|..
T Consensus 80 ~glg~~fL~~i~~~D~li~VV~~f 103 (274)
T cd01900 80 EGLGNKFLSHIREVDAIAHVVRCF 103 (274)
T ss_pred hHHHHHHHHHHHhCCEEEEEEeCc
Confidence 2222233 56799999999863
No 313
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=98.74 E-value=1.1e-07 Score=74.58 Aligned_cols=116 Identities=13% Similarity=0.141 Sum_probs=67.7
Q ss_pred cceeEEEEecccccceeeeeeeccCCCCCccc---c-------Ccee-eeeeeEEEECCeEEEEEEEeCCCCccc-----
Q 028595 3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDY---I-------PTVF-DNFSANVVAEGTTVNLGLWDTAGQEDY----- 66 (207)
Q Consensus 3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~---~-------~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~----- 66 (207)
..++|+++|..+.| ||||||.|++....... . ++.. ......+.-++..+.+.++||||-...
T Consensus 3 ~~fnImVvG~sG~G-KTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~ 81 (281)
T PF00735_consen 3 FNFNIMVVGESGLG-KTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSD 81 (281)
T ss_dssp EEEEEEEEECTTSS-HHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCH
T ss_pred ceEEEEEECCCCCC-HHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchh
Confidence 46899999999999 99999999987654331 1 1111 112234455778899999999992110
Q ss_pred --------------------cccc--cceecCCcEEEEEEeCCCh-hhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCccc
Q 028595 67 --------------------NRLR--PLSYRGADVFVLAFSLVSR-ASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRE 123 (207)
Q Consensus 67 --------------------~~~~--~~~~~~~d~~i~v~d~~~~-~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~ 123 (207)
.... ...=...|+++++.+.+.. -+-.++ .++..+. .-+++|-|..|+|...
T Consensus 82 ~~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di--~~mk~Ls---~~vNvIPvIaKaD~lt 156 (281)
T PF00735_consen 82 CWEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDI--EFMKRLS---KRVNVIPVIAKADTLT 156 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHH--HHHHHHT---TTSEEEEEESTGGGS-
T ss_pred hhHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHH--HHHHHhc---ccccEEeEEecccccC
Confidence 0001 1111246888888887642 222232 3444554 3688999999999854
Q ss_pred C
Q 028595 124 D 124 (207)
Q Consensus 124 ~ 124 (207)
.
T Consensus 157 ~ 157 (281)
T PF00735_consen 157 P 157 (281)
T ss_dssp H
T ss_pred H
Confidence 3
No 314
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=98.69 E-value=2.9e-08 Score=75.61 Aligned_cols=115 Identities=18% Similarity=0.152 Sum_probs=67.6
Q ss_pred EEEEEEeCCCCcc-cc-----ccccceec--CCcEEEEEEeCC---ChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCc
Q 028595 53 VNLGLWDTAGQED-YN-----RLRPLSYR--GADVFVLAFSLV---SRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 121 (207)
Q Consensus 53 ~~l~i~D~~G~~~-~~-----~~~~~~~~--~~d~~i~v~d~~---~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~ 121 (207)
....|+|||||-. |. ++....+. ..-+++++.|.. ++..|-.-+-+-...+.+ -..|++++.||+|+
T Consensus 116 ~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSilyk--tklp~ivvfNK~Dv 193 (366)
T KOG1532|consen 116 FDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSILYK--TKLPFIVVFNKTDV 193 (366)
T ss_pred cCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHHHHh--ccCCeEEEEecccc
Confidence 5678999999743 21 11111222 245677777753 455555542222223332 38999999999999
Q ss_pred ccCcccccCCCCCcccCHHHHHHHHH-----------------------HhCCcEEEEeccCCCCCHHHHHHHHHHHHh
Q 028595 122 REDKHYLADHPGLVPVTTAQGEELRK-----------------------QIGASYYIECSSKTQQNVKAVFDAAIKVVI 177 (207)
Q Consensus 122 ~~~~~~~~~~~~~~~v~~~~~~~~~~-----------------------~~~~~~~~e~Sa~~~~~i~~~f~~i~~~~~ 177 (207)
.++.-.. ....+-+.|.+ -+.-...+-+||.+|.|.+++|..+-+.+-
T Consensus 194 ~d~~fa~--------eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vd 264 (366)
T KOG1532|consen 194 SDSEFAL--------EWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVD 264 (366)
T ss_pred cccHHHH--------HHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHH
Confidence 8753210 01112222211 122235678999999999999999988775
No 315
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=98.67 E-value=1.7e-08 Score=76.90 Aligned_cols=158 Identities=15% Similarity=0.037 Sum_probs=93.6
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCCcccc-CceeeeeeeEEEECCeEEEEEEEeCCC----------Cccccccccc
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYI-PTVFDNFSANVVAEGTTVNLGLWDTAG----------QEDYNRLRPL 72 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~-~t~~~~~~~~~~~~~~~~~l~i~D~~G----------~~~~~~~~~~ 72 (207)
+..++++|.+||| ||+|||.+...+...... ++.|.+...+...-| -.+.+.|.|| .+.+..+...
T Consensus 136 ~pe~~~~g~SNVG-KSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v~--~~~~~vDlPG~~~a~y~~~~~~d~~~~t~~ 212 (320)
T KOG2486|consen 136 RPELAFYGRSNVG-KSSLLNDLVRVKNIADTSKSKNGKTQAINHFHVG--KSWYEVDLPGYGRAGYGFELPADWDKFTKS 212 (320)
T ss_pred CceeeeecCCccc-HHHHHhhhhhhhhhhhhcCCCCccceeeeeeecc--ceEEEEecCCcccccCCccCcchHhHhHHH
Confidence 5678999999999 999999998776543333 355655555544434 3456899999 2234455566
Q ss_pred eecCCc---EEEEEEeCCCh-hhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHH
Q 028595 73 SYRGAD---VFVLAFSLVSR-ASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ 148 (207)
Q Consensus 73 ~~~~~d---~~i~v~d~~~~-~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 148 (207)
|+.+.+ -+.++.|.+-+ .-.+.....|+. + .++|+.+|.||+|....-...++. ....++...+.
T Consensus 213 Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~g---e--~~VP~t~vfTK~DK~k~~~~~~kK------p~~~i~~~f~~ 281 (320)
T KOG2486|consen 213 YLLERENLVRVFLLVDASVPIQPTDNPEIAWLG---E--NNVPMTSVFTKCDKQKKVKRTGKK------PGLNIKINFQG 281 (320)
T ss_pred HHHhhhhhheeeeeeeccCCCCCCChHHHHHHh---h--cCCCeEEeeehhhhhhhccccccC------ccccceeehhh
Confidence 665533 33344444432 222221124443 3 389999999999976433211111 11122221222
Q ss_pred hC------CcEEEEeccCCCCCHHHHHHHHHHH
Q 028595 149 IG------ASYYIECSSKTQQNVKAVFDAAIKV 175 (207)
Q Consensus 149 ~~------~~~~~e~Sa~~~~~i~~~f~~i~~~ 175 (207)
+. ..|++.+|+.++.|++.+.-.+.+.
T Consensus 282 l~~~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q~ 314 (320)
T KOG2486|consen 282 LIRGVFLVDLPWIYVSSVTSLGRDLLLLHIAQL 314 (320)
T ss_pred ccccceeccCCceeeecccccCceeeeeehhhh
Confidence 11 1367789999999999887766543
No 316
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=98.65 E-value=1.1e-06 Score=66.37 Aligned_cols=152 Identities=16% Similarity=0.194 Sum_probs=96.7
Q ss_pred eeEEEEecccccceeeeeeeccCCCCC-ccccCceeeeeeeEEEECCeEEEEEEEeCCCC------ccccc-cccceecC
Q 028595 5 AKLACLFATQVTSFLLYVLSVSGRSSI-WDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQ------EDYNR-LRPLSYRG 76 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~------~~~~~-~~~~~~~~ 76 (207)
.+|+++|.|.|| ||||+..++..... ..|.-|.-.-..-.+..+| -.+++.|.||- -+-+. ..-...+.
T Consensus 63 aRValIGfPSVG-KStlLs~iT~T~SeaA~yeFTTLtcIpGvi~y~g--a~IQllDLPGIieGAsqgkGRGRQviavArt 139 (364)
T KOG1486|consen 63 ARVALIGFPSVG-KSTLLSKITSTHSEAASYEFTTLTCIPGVIHYNG--ANIQLLDLPGIIEGASQGKGRGRQVIAVART 139 (364)
T ss_pred eEEEEecCCCcc-HHHHHHHhhcchhhhhceeeeEEEeecceEEecC--ceEEEecCcccccccccCCCCCceEEEEeec
Confidence 579999999999 99999999876532 2343333222233444555 45789999982 12111 12234567
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHHh-hcC---CC-------------------------------------------
Q 028595 77 ADVFVLAFSLVSRASYENVLKKWIPELQ-HYS---PG------------------------------------------- 109 (207)
Q Consensus 77 ~d~~i~v~d~~~~~s~~~~~~~~~~~i~-~~~---~~------------------------------------------- 109 (207)
||.++.|.|.+..+.-..+...=++... +.+ |+
T Consensus 140 aDlilMvLDatk~e~qr~~le~ELe~vGiRLNk~~Pniy~k~kk~gGi~f~~T~~lT~~~ek~i~~ILheykI~Naevl~ 219 (364)
T KOG1486|consen 140 ADLILMVLDATKSEDQREILEKELEAVGIRLNKRKPNIYFKKKKTGGISFNTTVPLTHCDEKLIYTILHEYKIHNAEVLF 219 (364)
T ss_pred ccEEEEEecCCcchhHHHHHHHHHHHhceeccCCCCCeEEEeeccCCeEEeeeeccccccHHHHHHHHHHHeeccceEEE
Confidence 9999999999987666644332222221 111 11
Q ss_pred -------------------CcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCCCCCHHHHHH
Q 028595 110 -------------------VPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFD 170 (207)
Q Consensus 110 -------------------~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~ 170 (207)
+|++-|-||+|. ++.++...+++..+- +-+|+..+-|++.+++
T Consensus 220 ReD~t~DdfIDvi~gnr~Y~~ClYvYnKID~---------------vs~eevdrlAr~Pns---vViSC~m~lnld~lle 281 (364)
T KOG1486|consen 220 REDCTVDDFIDVIEGNRVYIKCLYVYNKIDQ---------------VSIEEVDRLARQPNS---VVISCNMKLNLDRLLE 281 (364)
T ss_pred ecCCChHHHHHHHhccceEEEEEEEeeccce---------------ecHHHHHHHhcCCCc---EEEEeccccCHHHHHH
Confidence 233344444443 577888888877654 6788888999999999
Q ss_pred HHHHHHh
Q 028595 171 AAIKVVI 177 (207)
Q Consensus 171 ~i~~~~~ 177 (207)
.+-+.+.
T Consensus 282 ~iWe~l~ 288 (364)
T KOG1486|consen 282 RIWEELN 288 (364)
T ss_pred HHHHHhc
Confidence 9888775
No 317
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.65 E-value=3e-07 Score=74.42 Aligned_cols=151 Identities=13% Similarity=0.080 Sum_probs=98.4
Q ss_pred EEEEecccccceeeeeeeccCCCCCccccCce---eeeeee-EEEECCeEEEEEEEeCCCCccccccccceecCCcEEEE
Q 028595 7 LACLFATQVTSFLLYVLSVSGRSSIWDYIPTV---FDNFSA-NVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 82 (207)
Q Consensus 7 i~iiG~~~~GgKssli~~l~~~~~~~~~~~t~---~~~~~~-~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~ 82 (207)
|+..|.-..| ||||+..+.+..-.. .|.. |.+... -...+-....+.+.|.||++++-+..-.-+...|.+++
T Consensus 3 i~t~GhidHg-kT~L~~altg~~~d~--l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~~i~~miag~~~~d~alL 79 (447)
T COG3276 3 IGTAGHIDHG-KTTLLKALTGGVTDR--LPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPDFISNLLAGLGGIDYALL 79 (447)
T ss_pred EEEeeeeecc-chhhhhhhccccccc--chhhhhcCceEeeeeEeccCCCCceEEeeCCCcHHHHHHHHhhhcCCceEEE
Confidence 5667888889 999999998775321 1111 111111 11222233478999999999875544444557899999
Q ss_pred EEeCCC---hhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHH--hCCcEEEEe
Q 028595 83 AFSLVS---RASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ--IGASYYIEC 157 (207)
Q Consensus 83 v~d~~~---~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~~~~~~~e~ 157 (207)
|.+.++ .++.+.+ ..+.++ .-...++|.||+|..+... ..+..++.... +...+++.+
T Consensus 80 vV~~deGl~~qtgEhL--~iLdll----gi~~giivltk~D~~d~~r-----------~e~~i~~Il~~l~l~~~~i~~~ 142 (447)
T COG3276 80 VVAADEGLMAQTGEHL--LILDLL----GIKNGIIVLTKADRVDEAR-----------IEQKIKQILADLSLANAKIFKT 142 (447)
T ss_pred EEeCccCcchhhHHHH--HHHHhc----CCCceEEEEeccccccHHH-----------HHHHHHHHHhhccccccccccc
Confidence 999964 4555554 233443 1344699999999976542 22222333222 334578999
Q ss_pred ccCCCCCHHHHHHHHHHHHh
Q 028595 158 SSKTQQNVKAVFDAAIKVVI 177 (207)
Q Consensus 158 Sa~~~~~i~~~f~~i~~~~~ 177 (207)
|+++|+||+++-..|....-
T Consensus 143 s~~~g~GI~~Lk~~l~~L~~ 162 (447)
T COG3276 143 SAKTGRGIEELKNELIDLLE 162 (447)
T ss_pred ccccCCCHHHHHHHHHHhhh
Confidence 99999999999999998874
No 318
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.63 E-value=2.1e-07 Score=66.61 Aligned_cols=83 Identities=17% Similarity=0.084 Sum_probs=55.8
Q ss_pred cEEEEEEeCCChhhHHHHHHHHH-HHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEE
Q 028595 78 DVFVLAFSLVSRASYENVLKKWI-PELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIE 156 (207)
Q Consensus 78 d~~i~v~d~~~~~s~~~~~~~~~-~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e 156 (207)
|++++|+|++++.+.... .+. ..+.. .+.|+++|.||+|+.+..+ ..+....+.+..+ ...+.
T Consensus 1 Dvvl~VvD~~~p~~~~~~--~i~~~~~~~--~~~p~IiVlNK~Dl~~~~~-----------~~~~~~~~~~~~~-~~ii~ 64 (155)
T cd01849 1 DVILEVLDARDPLGTRSP--DIERVLIKE--KGKKLILVLNKADLVPKEV-----------LRKWLAYLRHSYP-TIPFK 64 (155)
T ss_pred CEEEEEEeccCCccccCH--HHHHHHHhc--CCCCEEEEEechhcCCHHH-----------HHHHHHHHHhhCC-ceEEE
Confidence 789999999988666543 222 22222 4799999999999854321 1111122333333 36789
Q ss_pred eccCCCCCHHHHHHHHHHHH
Q 028595 157 CSSKTQQNVKAVFDAAIKVV 176 (207)
Q Consensus 157 ~Sa~~~~~i~~~f~~i~~~~ 176 (207)
+||.++.|++++.+.+.+..
T Consensus 65 vSa~~~~gi~~L~~~i~~~~ 84 (155)
T cd01849 65 ISATNGQGIEKKESAFTKQT 84 (155)
T ss_pred EeccCCcChhhHHHHHHHHh
Confidence 99999999999999987764
No 319
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.61 E-value=1.1e-07 Score=75.43 Aligned_cols=105 Identities=17% Similarity=0.114 Sum_probs=64.5
Q ss_pred EEEEEEEeCCCCccccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCC
Q 028595 52 TVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADH 131 (207)
Q Consensus 52 ~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~ 131 (207)
.+.+.|.||+|.-... ...+..+|.++++-+.. +-+++ ..+...+ .+.|.+++.||+|+.+....
T Consensus 126 g~D~viidT~G~~~~e---~~i~~~aD~i~vv~~~~---~~~el-~~~~~~l----~~~~~ivv~NK~Dl~~~~~~---- 190 (300)
T TIGR00750 126 GYDVIIVETVGVGQSE---VDIANMADTFVVVTIPG---TGDDL-QGIKAGL----MEIADIYVVNKADGEGATNV---- 190 (300)
T ss_pred CCCEEEEeCCCCchhh---hHHHHhhceEEEEecCC---ccHHH-HHHHHHH----hhhccEEEEEcccccchhHH----
Confidence 4788899999843211 22456678888885433 33443 2233323 25778999999998754321
Q ss_pred CCCcccCH--H----HHHHHHHH-hCC-cEEEEeccCCCCCHHHHHHHHHHHHh
Q 028595 132 PGLVPVTT--A----QGEELRKQ-IGA-SYYIECSSKTQQNVKAVFDAAIKVVI 177 (207)
Q Consensus 132 ~~~~~v~~--~----~~~~~~~~-~~~-~~~~e~Sa~~~~~i~~~f~~i~~~~~ 177 (207)
.. . ....+.+. .++ .+++.+||+++.|++++++++.+...
T Consensus 191 ------~~~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~ 238 (300)
T TIGR00750 191 ------TIARLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT 238 (300)
T ss_pred ------HHHHHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence 10 0 01111111 122 26899999999999999999988643
No 320
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.61 E-value=2.8e-07 Score=67.06 Aligned_cols=89 Identities=20% Similarity=0.126 Sum_probs=60.8
Q ss_pred ccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHh
Q 028595 70 RPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI 149 (207)
Q Consensus 70 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 149 (207)
....++++|++++|+|++++....+. .+...+ .+.|.++|.||+|+.+.. ......++.+..
T Consensus 13 ~~~~i~~aD~il~v~D~~~~~~~~~~--~i~~~~----~~k~~ilVlNK~Dl~~~~------------~~~~~~~~~~~~ 74 (171)
T cd01856 13 IKEKLKLVDLVIEVRDARIPLSSRNP--LLEKIL----GNKPRIIVLNKADLADPK------------KTKKWLKYFESK 74 (171)
T ss_pred HHHHHhhCCEEEEEeeccCccCcCCh--hhHhHh----cCCCEEEEEehhhcCChH------------HHHHHHHHHHhc
Confidence 35567889999999999876554332 222222 357999999999985332 111222222333
Q ss_pred CCcEEEEeccCCCCCHHHHHHHHHHHHh
Q 028595 150 GASYYIECSSKTQQNVKAVFDAAIKVVI 177 (207)
Q Consensus 150 ~~~~~~e~Sa~~~~~i~~~f~~i~~~~~ 177 (207)
+. .++.+||+++.|++++...+...+.
T Consensus 75 ~~-~vi~iSa~~~~gi~~L~~~l~~~l~ 101 (171)
T cd01856 75 GE-KVLFVNAKSGKGVKKLLKAAKKLLK 101 (171)
T ss_pred CC-eEEEEECCCcccHHHHHHHHHHHHH
Confidence 33 6789999999999999999988764
No 321
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=98.60 E-value=7.3e-08 Score=82.09 Aligned_cols=117 Identities=12% Similarity=0.070 Sum_probs=71.9
Q ss_pred cceeEEEEecccccceeeeeeeccCCCCC-cc-ccCceeeeeeeEEEECCeEEEEEEEeCCCCccccc-------c---c
Q 028595 3 LLAKLACLFATQVTSFLLYVLSVSGRSSI-WD-YIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNR-------L---R 70 (207)
Q Consensus 3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~-~~-~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~-------~---~ 70 (207)
...+|+++|.+++| |||++|+|++.... .. ..+.+..........+| ..+.++||||-..... + .
T Consensus 117 fslrIvLVGKTGVG-KSSLINSILGekvf~vss~~~~TTr~~ei~~~idG--~~L~VIDTPGL~dt~~dq~~neeILk~I 193 (763)
T TIGR00993 117 FSLNILVLGKSGVG-KSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQG--VKIRVIDTPGLKSSASDQSKNEKILSSV 193 (763)
T ss_pred cceEEEEECCCCCC-HHHHHHHHhccccccccCCCCCceEEEEEEEEECC--ceEEEEECCCCCccccchHHHHHHHHHH
Confidence 34689999999999 99999999988632 22 12222222222333455 5689999999554211 1 1
Q ss_pred cceec--CCcEEEEEEeCCChhh-HHHHHHHHHHHHhhcC-C--CCcEEEEeeCCCcccC
Q 028595 71 PLSYR--GADVFVLAFSLVSRAS-YENVLKKWIPELQHYS-P--GVPVVLVGTKLDLRED 124 (207)
Q Consensus 71 ~~~~~--~~d~~i~v~d~~~~~s-~~~~~~~~~~~i~~~~-~--~~piivv~nK~D~~~~ 124 (207)
..++. ..|++|+|..++.... .++ ..++..|.+.. + -..+||+.|+.|..+.
T Consensus 194 k~~Lsk~gpDVVLlV~RLd~~~~D~eD--~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lpp 251 (763)
T TIGR00993 194 KKFIKKNPPDIVLYVDRLDMQTRDSND--LPLLRTITDVLGPSIWFNAIVTLTHAASAPP 251 (763)
T ss_pred HHHHhcCCCCEEEEEEeCCCccccHHH--HHHHHHHHHHhCHHhHcCEEEEEeCCccCCC
Confidence 22333 4799999998763322 122 23444444333 1 2568999999998753
No 322
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.60 E-value=1.2e-07 Score=66.82 Aligned_cols=78 Identities=14% Similarity=0.092 Sum_probs=53.9
Q ss_pred ceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCC
Q 028595 72 LSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA 151 (207)
Q Consensus 72 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 151 (207)
..+.++|++++|+|++++.+..+. .+...+....++.|+++|+||+|+.+.. ......++.+..+.
T Consensus 7 ~~i~~aD~vl~ViD~~~p~~~~~~--~l~~~l~~~~~~k~~iivlNK~DL~~~~------------~~~~~~~~~~~~~~ 72 (141)
T cd01857 7 RVVERSDIVVQIVDARNPLLFRPP--DLERYVKEVDPRKKNILLLNKADLLTEE------------QRKAWAEYFKKEGI 72 (141)
T ss_pred HHHhhCCEEEEEEEccCCcccCCH--HHHHHHHhccCCCcEEEEEechhcCCHH------------HHHHHHHHHHhcCC
Confidence 456789999999999988765531 3333333222578999999999985432 22344555666665
Q ss_pred cEEEEeccCCCCC
Q 028595 152 SYYIECSSKTQQN 164 (207)
Q Consensus 152 ~~~~e~Sa~~~~~ 164 (207)
.++.+||.++.+
T Consensus 73 -~ii~iSa~~~~~ 84 (141)
T cd01857 73 -VVVFFSALKENA 84 (141)
T ss_pred -eEEEEEecCCCc
Confidence 889999998764
No 323
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.58 E-value=2.4e-07 Score=72.23 Aligned_cols=166 Identities=15% Similarity=0.138 Sum_probs=102.3
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCC---cc----------ccCce-------e--eeeee--EEEECC----eEEEE
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSI---WD----------YIPTV-------F--DNFSA--NVVAEG----TTVNL 55 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~---~~----------~~~t~-------~--~~~~~--~~~~~~----~~~~l 55 (207)
..+|.++|--..| ||||...|.+---. ++ |..+. . ..|.. .....| ---.+
T Consensus 10 ~vNIG~vGHVdHG-KtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~V 88 (415)
T COG5257 10 EVNIGMVGHVDHG-KTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRRV 88 (415)
T ss_pred ceEeeeeeecccc-hhhheehhhceeeechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEEE
Confidence 5689999999999 99999998753211 10 11000 0 00100 001011 12357
Q ss_pred EEEeCCCCccccccccceecCCcEEEEEEeCCCh----hhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCC
Q 028595 56 GLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSR----ASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADH 131 (207)
Q Consensus 56 ~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~ 131 (207)
.+.|.||+|-.-..--.=..-.|+.++|.+.+.+ ++-+++. -++.+ .-..++++-||+|+...+..+
T Consensus 89 SfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~--AleIi----gik~iiIvQNKIDlV~~E~Al--- 159 (415)
T COG5257 89 SFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLM--ALEII----GIKNIIIVQNKIDLVSRERAL--- 159 (415)
T ss_pred EEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHH--HHhhh----ccceEEEEecccceecHHHHH---
Confidence 8999999986432111112235999999999864 4445441 12222 135699999999997654310
Q ss_pred CCCcccCHHHHHHHHHHh--CCcEEEEeccCCCCCHHHHHHHHHHHHhCCCcchh
Q 028595 132 PGLVPVTTAQGEELRKQI--GASYYIECSSKTQQNVKAVFDAAIKVVIKPPQKQK 184 (207)
Q Consensus 132 ~~~~~v~~~~~~~~~~~~--~~~~~~e~Sa~~~~~i~~~f~~i~~~~~~~~~~~~ 184 (207)
...+++++|.+.- ...|.+.+||..+.||+-+++.|.+.+..+..+..
T Consensus 160 -----E~y~qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP~rd~~ 209 (415)
T COG5257 160 -----ENYEQIKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPTPERDLD 209 (415)
T ss_pred -----HHHHHHHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCCCccCCC
Confidence 1344555555532 12489999999999999999999999988766543
No 324
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.57 E-value=4e-07 Score=71.37 Aligned_cols=91 Identities=20% Similarity=0.114 Sum_probs=62.7
Q ss_pred ccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHh
Q 028595 70 RPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI 149 (207)
Q Consensus 70 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 149 (207)
....+..+|++++|.|+.++.+..+. .+...+ .+.|+++|.||+|+.+.. ......++.+..
T Consensus 15 ~~~~l~~aDvVl~V~Dar~p~~~~~~--~i~~~l----~~kp~IiVlNK~DL~~~~------------~~~~~~~~~~~~ 76 (276)
T TIGR03596 15 IKEKLKLVDVVIEVLDARIPLSSRNP--MIDEIR----GNKPRLIVLNKADLADPA------------VTKQWLKYFEEK 76 (276)
T ss_pred HHHHHhhCCEEEEEEeCCCCCCCCCh--hHHHHH----CCCCEEEEEEccccCCHH------------HHHHHHHHHHHc
Confidence 34567789999999999887555432 233333 368999999999985332 112222222334
Q ss_pred CCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 028595 150 GASYYIECSSKTQQNVKAVFDAAIKVVIKP 179 (207)
Q Consensus 150 ~~~~~~e~Sa~~~~~i~~~f~~i~~~~~~~ 179 (207)
+. +.+.+||.++.|++++.+.+.+.+...
T Consensus 77 ~~-~vi~iSa~~~~gi~~L~~~i~~~~~~~ 105 (276)
T TIGR03596 77 GI-KALAINAKKGKGVKKIIKAAKKLLKEK 105 (276)
T ss_pred CC-eEEEEECCCcccHHHHHHHHHHHHHHh
Confidence 54 788999999999999999988877543
No 325
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=98.57 E-value=8.2e-08 Score=81.03 Aligned_cols=114 Identities=17% Similarity=0.153 Sum_probs=81.8
Q ss_pred cceeEEEEecccccceeeeeeeccCCCCCcc---------ccCce------eeee-ee--EEEE---CCeEEEEEEEeCC
Q 028595 3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWD---------YIPTV------FDNF-SA--NVVA---EGTTVNLGLWDTA 61 (207)
Q Consensus 3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~---------~~~t~------~~~~-~~--~~~~---~~~~~~l~i~D~~ 61 (207)
...+|.++|.-..| ||+|+..|.......- |..+. |... .. .+.. .++.+-+++.|||
T Consensus 127 ~irnV~l~GhLhhG-KT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTP 205 (971)
T KOG0468|consen 127 RIRNVGLVGHLHHG-KTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTP 205 (971)
T ss_pred eEEEEEEeeccccC-hhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCC
Confidence 45789999999999 9999999987654321 11111 1111 01 1111 4678999999999
Q ss_pred CCccccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCc
Q 028595 62 GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 121 (207)
Q Consensus 62 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~ 121 (207)
|+-.+-.-....++-+|++++++|+.+.-.++.- ..+...-+ ...|+++|.||.|.
T Consensus 206 GHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntE--r~ikhaiq--~~~~i~vviNKiDR 261 (971)
T KOG0468|consen 206 GHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTE--RIIKHAIQ--NRLPIVVVINKVDR 261 (971)
T ss_pred CcccchHHHHHHhhhcceEEEEEEcccCceeeHH--HHHHHHHh--ccCcEEEEEehhHH
Confidence 9998877777778889999999999988777753 34333332 37999999999995
No 326
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=98.56 E-value=1.5e-07 Score=71.92 Aligned_cols=69 Identities=20% Similarity=0.171 Sum_probs=45.0
Q ss_pred EEEEEEeCCCCcc-------------ccccccceecC-CcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeC
Q 028595 53 VNLGLWDTAGQED-------------YNRLRPLSYRG-ADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTK 118 (207)
Q Consensus 53 ~~l~i~D~~G~~~-------------~~~~~~~~~~~-~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK 118 (207)
..+.++||||-.. ...+...|+++ .+++++|.|.+..-.-.+. ..+...+.. ...|.++|.||
T Consensus 125 ~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~-l~ia~~ld~--~~~rti~ViTK 201 (240)
T smart00053 125 LNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDA-LKLAKEVDP--QGERTIGVITK 201 (240)
T ss_pred CceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhH-HHHHHHHHH--cCCcEEEEEEC
Confidence 5678999999632 12345677774 5699999987653222222 233334433 37899999999
Q ss_pred CCcccC
Q 028595 119 LDLRED 124 (207)
Q Consensus 119 ~D~~~~ 124 (207)
.|..+.
T Consensus 202 ~D~~~~ 207 (240)
T smart00053 202 LDLMDE 207 (240)
T ss_pred CCCCCc
Confidence 998654
No 327
>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=98.56 E-value=4.9e-07 Score=72.06 Aligned_cols=132 Identities=18% Similarity=0.267 Sum_probs=86.8
Q ss_pred EEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEEEeCCChhhHHHH------HHHHHHHHhhcC-----CCCcEE
Q 028595 45 NVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENV------LKKWIPELQHYS-----PGVPVV 113 (207)
Q Consensus 45 ~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~------~~~~~~~i~~~~-----~~~pii 113 (207)
.+.+.+ ..+.++|+|||...+..|-+++.+++++|||.++++.+....- +.+-+.++...+ .+.+++
T Consensus 189 ~F~~k~--~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~tsii 266 (354)
T KOG0082|consen 189 EFTIKG--LKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFANTSII 266 (354)
T ss_pred EEEeCC--CceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCcccccCcEE
Confidence 344444 7788999999999999999999999999999999864332111 122233332222 579999
Q ss_pred EEeeCCCcccCcc-------cccCCCCCcccCHHHHHHHHHH-----hC----CcEEEEeccCCCCCHHHHHHHHHHHHh
Q 028595 114 LVGTKLDLREDKH-------YLADHPGLVPVTTAQGEELRKQ-----IG----ASYYIECSSKTQQNVKAVFDAAIKVVI 177 (207)
Q Consensus 114 vv~nK~D~~~~~~-------~~~~~~~~~~v~~~~~~~~~~~-----~~----~~~~~e~Sa~~~~~i~~~f~~i~~~~~ 177 (207)
+++||.|+-++.- .+.+-.+. -..+++..+.+. +. -..++.+.|.+..+|+.+|..+...+.
T Consensus 267 LFLNK~DLFeEKi~~~~~~~~Fpdy~G~--~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d~Ii 344 (354)
T KOG0082|consen 267 LFLNKKDLFEEKIKKVPLTDCFPDYKGV--NTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTDTII 344 (354)
T ss_pred EEeecHHHHHHHhccCchhhhCcCCCCC--CChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHHHHH
Confidence 9999999864322 12222222 133444443332 11 113556899999999999999999887
Q ss_pred CCC
Q 028595 178 KPP 180 (207)
Q Consensus 178 ~~~ 180 (207)
...
T Consensus 345 ~~n 347 (354)
T KOG0082|consen 345 QNN 347 (354)
T ss_pred HHH
Confidence 654
No 328
>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.51 E-value=7.3e-07 Score=66.93 Aligned_cols=166 Identities=14% Similarity=0.192 Sum_probs=97.3
Q ss_pred eeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEEC---CeEEEEEEEeCCCCcccc-c--cccceecCCc
Q 028595 5 AKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAE---GTTVNLGLWDTAGQEDYN-R--LRPLSYRGAD 78 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~---~~~~~l~i~D~~G~~~~~-~--~~~~~~~~~d 78 (207)
..|+++|-..+| ||++-.-...+- .+ ..|...+.+..+..+ +.-+.+.+||.|||-.+- . -....++++-
T Consensus 28 p~ilLMG~rRsG-KsSI~KVVFhkM-sP--neTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~e~iF~~~g 103 (347)
T KOG3887|consen 28 PRILLMGLRRSG-KSSIQKVVFHKM-SP--NETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDYEMIFRGVG 103 (347)
T ss_pred ceEEEEeecccC-cchhhheeeecc-CC--CceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCHHHHHhccC
Confidence 459999999999 999876554321 11 112211111122222 234778999999986542 2 2356788999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHH---hhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCC----
Q 028595 79 VFVLAFSLVSRASYENVLKKWIPEL---QHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA---- 151 (207)
Q Consensus 79 ~~i~v~d~~~~~s~~~~~~~~~~~i---~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---- 151 (207)
+.|+|.|..+ .+.+++..+...+ .+.+|++.+=+..+|.|-..+...+. ..+.+...-...++ ..|.
T Consensus 104 ALifvIDaQd--dy~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kie---tqrdI~qr~~d~l~-d~gle~v~ 177 (347)
T KOG3887|consen 104 ALIFVIDAQD--DYMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIE---TQRDIHQRTNDELA-DAGLEKVQ 177 (347)
T ss_pred eEEEEEechH--HHHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhh---hHHHHHHHhhHHHH-hhhhccce
Confidence 9999999765 3333324443333 33447888989999999543322100 01111111112222 2222
Q ss_pred cEEEEeccCCCCCHHHHHHHHHHHHhCCCc
Q 028595 152 SYYIECSSKTQQNVKAVFDAAIKVVIKPPQ 181 (207)
Q Consensus 152 ~~~~e~Sa~~~~~i~~~f~~i~~~~~~~~~ 181 (207)
..|+.+|..+ ++|-|+|..+++.++++-+
T Consensus 178 vsf~LTSIyD-HSIfEAFSkvVQkLipqLp 206 (347)
T KOG3887|consen 178 VSFYLTSIYD-HSIFEAFSKVVQKLIPQLP 206 (347)
T ss_pred EEEEEeeecc-hHHHHHHHHHHHHHhhhch
Confidence 2566777765 8999999999999987754
No 329
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=98.48 E-value=5.7e-07 Score=78.16 Aligned_cols=118 Identities=17% Similarity=0.083 Sum_probs=83.6
Q ss_pred ccceeEEEEecccccceeeeeeeccCCC--CCc--cc------cCce------eeee-eeEEEECCe-EEEEEEEeCCCC
Q 028595 2 ELLAKLACLFATQVTSFLLYVLSVSGRS--SIW--DY------IPTV------FDNF-SANVVAEGT-TVNLGLWDTAGQ 63 (207)
Q Consensus 2 ~~~~ki~iiG~~~~GgKssli~~l~~~~--~~~--~~------~~t~------~~~~-~~~~~~~~~-~~~l~i~D~~G~ 63 (207)
+...+|.+++.-.+| ||||..+++... +.. +. .... |.+. +..+...-+ .+.++++||||+
T Consensus 8 ~~~RNigI~aHidaG-KTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGH 86 (697)
T COG0480 8 ERIRNIGIVAHIDAG-KTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGH 86 (697)
T ss_pred ccceEEEEEeccCCC-hHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCc
Confidence 346799999999999 999999986321 111 00 0000 1111 111222222 588999999999
Q ss_pred ccccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccC
Q 028595 64 EDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED 124 (207)
Q Consensus 64 ~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~ 124 (207)
-+|.......++-.|++++|+|....-..+.- ..|.+.... ++|.+++.||.|....
T Consensus 87 VDFt~EV~rslrvlDgavvVvdaveGV~~QTE-tv~rqa~~~---~vp~i~fiNKmDR~~a 143 (697)
T COG0480 87 VDFTIEVERSLRVLDGAVVVVDAVEGVEPQTE-TVWRQADKY---GVPRILFVNKMDRLGA 143 (697)
T ss_pred cccHHHHHHHHHhhcceEEEEECCCCeeecHH-HHHHHHhhc---CCCeEEEEECcccccc
Confidence 99999999999999999999999987666654 456555433 8999999999997654
No 330
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=98.47 E-value=1.1e-06 Score=66.00 Aligned_cols=162 Identities=12% Similarity=0.009 Sum_probs=88.2
Q ss_pred ccceeEEEEecccccceeeeeeeccCCCCCc---------cccCceeeee-eeEEEECCeEEEEEEEeCCCCccc-----
Q 028595 2 ELLAKLACLFATQVTSFLLYVLSVSGRSSIW---------DYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDY----- 66 (207)
Q Consensus 2 ~~~~ki~iiG~~~~GgKssli~~l~~~~~~~---------~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~----- 66 (207)
.+.++|+++|.++.| ||||+|.+....... .+..|+.... ...+.-+|...++.++||||.-+.
T Consensus 44 GF~FNIMVVgqSglg-kstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~n 122 (336)
T KOG1547|consen 44 GFDFNIMVVGQSGLG-KSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINNDN 122 (336)
T ss_pred cCceEEEEEecCCCC-chhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCccc
Confidence 457899999999999 999999987554332 1222222111 223444677889999999992211
Q ss_pred ---------------------cccccceecCC--cEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCccc
Q 028595 67 ---------------------NRLRPLSYRGA--DVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRE 123 (207)
Q Consensus 67 ---------------------~~~~~~~~~~~--d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~ 123 (207)
...++..+.+. +++++....+- .++.-+...+++.+.+ -+.++-|..|+|...
T Consensus 123 cWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptG-hsLrplDieflkrLt~---vvNvvPVIakaDtlT 198 (336)
T KOG1547|consen 123 CWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTG-HSLRPLDIEFLKRLTE---VVNVVPVIAKADTLT 198 (336)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCC-CccCcccHHHHHHHhh---hheeeeeEeeccccc
Confidence 11223444444 45555544432 3333332344444433 455676778999642
Q ss_pred CcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCCCCCHHHHHHHHHHHHh
Q 028595 124 DKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVI 177 (207)
Q Consensus 124 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i~~~~~ 177 (207)
-++. ..-.+.+++-...+++ .++.--+.+-..=+..+..-++..+
T Consensus 199 leEr--------~~FkqrI~~el~~~~i-~vYPq~~fded~ed~~lN~kvR~~i 243 (336)
T KOG1547|consen 199 LEER--------SAFKQRIRKELEKHGI-DVYPQDSFDEDLEDKTLNDKVRESI 243 (336)
T ss_pred HHHH--------HHHHHHHHHHHHhcCc-ccccccccccchhHHHHHHHHHhhC
Confidence 2110 0133445555566676 6666555443333444444444443
No 331
>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.47 E-value=5.1e-06 Score=66.25 Aligned_cols=188 Identities=13% Similarity=0.080 Sum_probs=108.0
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCCcccc-----------------------Cceeee-eeeEEEE----------C
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYI-----------------------PTVFDN-FSANVVA----------E 49 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~-----------------------~t~~~~-~~~~~~~----------~ 49 (207)
..+++++|+..+| ||||+--|+.+..+...- .+.|-+ ..+.+.. +
T Consensus 167 evRvAVlGg~D~G-KSTLlGVLTQgeLDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e 245 (591)
T KOG1143|consen 167 EVRVAVLGGCDVG-KSTLLGVLTQGELDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVE 245 (591)
T ss_pred EEEEEEecCcccC-cceeeeeeecccccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHHHh
Confidence 5689999999999 999999998776543100 001100 0001111 1
Q ss_pred CeEEEEEEEeCCCCccccccccceecC--CcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCccc
Q 028595 50 GTTVNLGLWDTAGQEDYNRLRPLSYRG--ADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHY 127 (207)
Q Consensus 50 ~~~~~l~i~D~~G~~~~~~~~~~~~~~--~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~ 127 (207)
...--+.++|.+|+.+|....-+-+.+ .|..++|.++...-.... .+.+..+... ++|+.++.+|.|+......
T Consensus 246 ~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVsA~~Gi~~tT--rEHLgl~~AL--~iPfFvlvtK~Dl~~~~~~ 321 (591)
T KOG1143|consen 246 KSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVSADRGITWTT--REHLGLIAAL--NIPFFVLVTKMDLVDRQGL 321 (591)
T ss_pred hhcceEEEeecccchhhheeeeeecccCCCceEEEEEEcCCCCcccc--HHHHHHHHHh--CCCeEEEEEeeccccchhH
Confidence 223467899999999986654444432 578888888776444332 3444454443 8999999999999865321
Q ss_pred ---------ccCCCC----Ccc-cCHHHHHHHHHH---hCCcEEEEeccCCCCCHHHHHHHHHHHHhCCCcchhhhcccC
Q 028595 128 ---------LADHPG----LVP-VTTAQGEELRKQ---IGASYYIECSSKTQQNVKAVFDAAIKVVIKPPQKQKEKKKKQ 190 (207)
Q Consensus 128 ---------~~~~~~----~~~-v~~~~~~~~~~~---~~~~~~~e~Sa~~~~~i~~~f~~i~~~~~~~~~~~~~~~~~~ 190 (207)
+-..++ +.- -+..++-..++. -++.|.|-+|+.+|+++.-+- .++..+...-..++..+--+
T Consensus 322 ~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~-~fLn~Lsp~~~~~e~~~L~q 400 (591)
T KOG1143|consen 322 KKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLR-TFLNCLSPAGTAEERIQLVQ 400 (591)
T ss_pred HHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHH-HHHhhcCCcCChHHHHHHhc
Confidence 001111 111 122333333333 245688999999999986443 33344433333333334445
Q ss_pred CCeEEee
Q 028595 191 RGCLLNV 197 (207)
Q Consensus 191 ~~c~~~~ 197 (207)
..|.+.+
T Consensus 401 ~~~eFqv 407 (591)
T KOG1143|consen 401 LPAEFQV 407 (591)
T ss_pred CcceeeH
Confidence 5565543
No 332
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.46 E-value=1.1e-07 Score=66.90 Aligned_cols=53 Identities=11% Similarity=0.049 Sum_probs=37.3
Q ss_pred eEEEEecccccceeeeeeeccCCCCCccccCcee-eeeeeEEEECCeEEEEEEEeCCCC
Q 028595 6 KLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVF-DNFSANVVAEGTTVNLGLWDTAGQ 63 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~ 63 (207)
+++++|.+++| ||||+|++.+...... ..+.+ ......+.+++ .+.+|||||-
T Consensus 85 ~~~~~G~~~vG-Kstlin~l~~~~~~~~-~~~~~~~~~~~~~~~~~---~~~i~DtpG~ 138 (141)
T cd01857 85 TIGLVGYPNVG-KSSLINALVGKKKVSV-SATPGKTKHFQTIFLTP---TITLCDCPGL 138 (141)
T ss_pred EEEEECCCCCC-HHHHHHHHhCCCceee-CCCCCcccceEEEEeCC---CEEEEECCCc
Confidence 78999999999 9999999998875422 22222 22233455554 4689999995
No 333
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.45 E-value=1e-06 Score=69.51 Aligned_cols=90 Identities=22% Similarity=0.170 Sum_probs=62.5
Q ss_pred ccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHh
Q 028595 70 RPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI 149 (207)
Q Consensus 70 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 149 (207)
....+..+|++++|.|..++.+.... .+...+ .+.|+++|.||+|+.+.. ..+...++.+..
T Consensus 18 l~~~l~~aDvIL~VvDar~p~~~~~~--~l~~~~----~~kp~iiVlNK~DL~~~~------------~~~~~~~~~~~~ 79 (287)
T PRK09563 18 IKENLKLVDVVIEVLDARIPLSSENP--MIDKII----GNKPRLLILNKSDLADPE------------VTKKWIEYFEEQ 79 (287)
T ss_pred HHHHhhhCCEEEEEEECCCCCCCCCh--hHHHHh----CCCCEEEEEEchhcCCHH------------HHHHHHHHHHHc
Confidence 34567789999999999887654432 233333 268999999999985321 112222333344
Q ss_pred CCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 028595 150 GASYYIECSSKTQQNVKAVFDAAIKVVIK 178 (207)
Q Consensus 150 ~~~~~~e~Sa~~~~~i~~~f~~i~~~~~~ 178 (207)
+. +++.+||.++.|++++.+.+...+..
T Consensus 80 ~~-~vi~vSa~~~~gi~~L~~~l~~~l~~ 107 (287)
T PRK09563 80 GI-KALAINAKKGQGVKKILKAAKKLLKE 107 (287)
T ss_pred CC-eEEEEECCCcccHHHHHHHHHHHHHH
Confidence 54 78899999999999999998877644
No 334
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=98.45 E-value=2.9e-07 Score=71.81 Aligned_cols=57 Identities=9% Similarity=0.032 Sum_probs=40.7
Q ss_pred CCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHH-hCCcEEEEeccCCCCCHHHHHHHHHHH
Q 028595 109 GVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ-IGASYYIECSSKTQQNVKAVFDAAIKV 175 (207)
Q Consensus 109 ~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~~~~e~Sa~~~~~i~~~f~~i~~~ 175 (207)
..+-++|.||+|+.+.... ..+...+..+. ....+.+++||++|+|++++.++|..+
T Consensus 230 ~~ADIVVLNKiDLl~~~~~----------dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~ 287 (290)
T PRK10463 230 AAASLMLLNKVDLLPYLNF----------DVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred hcCcEEEEEhHHcCcccHH----------HHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 4567999999999753211 33334444443 334589999999999999999999764
No 335
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=98.40 E-value=5.4e-06 Score=68.18 Aligned_cols=124 Identities=19% Similarity=0.270 Sum_probs=80.6
Q ss_pred EEEEEEeCCCCccccccccceecCCcEEEEEEeCCCh----------hhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCc
Q 028595 53 VNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSR----------ASYENVLKKWIPELQHYS-PGVPVVLVGTKLDL 121 (207)
Q Consensus 53 ~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~ 121 (207)
..+.++|++|+...+..|.+++.+++++|||.++++- ..+.+.+..|-....... .+.|++|++||.|+
T Consensus 236 ~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~~~iil~lnK~D~ 315 (389)
T PF00503_consen 236 RKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKNTPIILFLNKIDL 315 (389)
T ss_dssp EEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTTSEEEEEEE-HHH
T ss_pred cccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCcccccCceEEeeecHHH
Confidence 5679999999999999999999999999999998742 223343333333333322 58999999999997
Q ss_pred ccCcc--------cccCCCCCcccCHHHHHHHHHHh-----------CCcEEEEeccCCCCCHHHHHHHHHHHH
Q 028595 122 REDKH--------YLADHPGLVPVTTAQGEELRKQI-----------GASYYIECSSKTQQNVKAVFDAAIKVV 176 (207)
Q Consensus 122 ~~~~~--------~~~~~~~~~~v~~~~~~~~~~~~-----------~~~~~~e~Sa~~~~~i~~~f~~i~~~~ 176 (207)
-...- .+.+..+..+-..+.+..|.... ....++.++|.+..++..+|..+.+.+
T Consensus 316 f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v~~~v~~~i 389 (389)
T PF00503_consen 316 FEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKVFNAVKDII 389 (389)
T ss_dssp HHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHHHHHHHHHH
T ss_pred HHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHHHHHhcCcC
Confidence 43211 11111122112445555544432 111455799999999999999887654
No 336
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=98.40 E-value=1.8e-06 Score=70.00 Aligned_cols=132 Identities=14% Similarity=0.084 Sum_probs=90.3
Q ss_pred cceeEEEEecccccceeeeeeecc--CCCCCc--------cccCc----------eeeee-eeEEEECCeEEEEEEEeCC
Q 028595 3 LLAKLACLFATQVTSFLLYVLSVS--GRSSIW--------DYIPT----------VFDNF-SANVVAEGTTVNLGLWDTA 61 (207)
Q Consensus 3 ~~~ki~iiG~~~~GgKssli~~l~--~~~~~~--------~~~~t----------~~~~~-~~~~~~~~~~~~l~i~D~~ 61 (207)
.+...+||--+.+| ||||-..++ ++-+.. ....+ -|... +..+..+.....++|.|||
T Consensus 11 rRRTFAIISHPDAG-KTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTP 89 (528)
T COG4108 11 RRRTFAIISHPDAG-KTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTP 89 (528)
T ss_pred hhcceeEEecCCCC-cccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCC
Confidence 45678899999999 999988875 222110 00011 12223 3344556667889999999
Q ss_pred CCccccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHH
Q 028595 62 GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQ 141 (207)
Q Consensus 62 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~ 141 (207)
|+++|..-....+..+|.++.|.|+...-.-+.+ ++.+..+- .++|++-+.||.|..... ..+.
T Consensus 90 GHeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~--KLfeVcrl--R~iPI~TFiNKlDR~~rd------------P~EL 153 (528)
T COG4108 90 GHEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQTL--KLFEVCRL--RDIPIFTFINKLDREGRD------------PLEL 153 (528)
T ss_pred CccccchhHHHHHHhhheeeEEEecccCccHHHH--HHHHHHhh--cCCceEEEeeccccccCC------------hHHH
Confidence 9999987777778889999999998875544443 33333322 489999999999976543 5566
Q ss_pred HHHHHHHhCC
Q 028595 142 GEELRKQIGA 151 (207)
Q Consensus 142 ~~~~~~~~~~ 151 (207)
..+..+.+++
T Consensus 154 LdEiE~~L~i 163 (528)
T COG4108 154 LDEIEEELGI 163 (528)
T ss_pred HHHHHHHhCc
Confidence 6666666664
No 337
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=98.35 E-value=1e-05 Score=64.66 Aligned_cols=83 Identities=12% Similarity=0.018 Sum_probs=54.6
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCC-ccccCceeeeeeeEEEE------------C----CeEEEEEEEeCCC----
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSI-WDYIPTVFDNFSANVVA------------E----GTTVNLGLWDTAG---- 62 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~------------~----~~~~~l~i~D~~G---- 62 (207)
..++.++|-|||| ||||.|.++...-. ..|+-++-+.-.-.+.+ . -....+.++|++|
T Consensus 2 ~l~~GIVGlPNVG-KSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~G 80 (372)
T COG0012 2 SLKIGIVGLPNVG-KSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKG 80 (372)
T ss_pred CceeEEecCCCCc-HHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCC
Confidence 4689999999999 99999999977632 23332221111111111 1 1246789999876
Q ss_pred Ccccccccccee---cCCcEEEEEEeCC
Q 028595 63 QEDYNRLRPLSY---RGADVFVLAFSLV 87 (207)
Q Consensus 63 ~~~~~~~~~~~~---~~~d~~i~v~d~~ 87 (207)
...-+.+-+.|+ +.+|+++.|.+..
T Consensus 81 As~GeGLGNkFL~~IRevdaI~hVVr~f 108 (372)
T COG0012 81 ASKGEGLGNKFLDNIREVDAIIHVVRCF 108 (372)
T ss_pred cccCCCcchHHHHhhhhcCeEEEEEEec
Confidence 445566666665 5699999999876
No 338
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=98.34 E-value=2.3e-05 Score=62.82 Aligned_cols=163 Identities=17% Similarity=0.038 Sum_probs=95.3
Q ss_pred eeEEEEecccccceeeeeeeccCCCCCccccCc----------e--ee--eeeeE-EEE-CC------------------
Q 028595 5 AKLACLFATQVTSFLLYVLSVSGRSSIWDYIPT----------V--FD--NFSAN-VVA-EG------------------ 50 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t----------~--~~--~~~~~-~~~-~~------------------ 50 (207)
..|...|.-..| ||||+-.|..++.++..-.| + |. ..+.. +-. +|
T Consensus 118 v~Vg~aGhVdhG-KSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~~vv 196 (527)
T COG5258 118 VLVGVAGHVDHG-KSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKAAVV 196 (527)
T ss_pred EEEEEeccccCC-cceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHhHhh
Confidence 467889999999 99999999977755421111 1 10 11111 000 11
Q ss_pred --eEEEEEEEeCCCCccccc--cccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcc
Q 028595 51 --TTVNLGLWDTAGQEDYNR--LRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKH 126 (207)
Q Consensus 51 --~~~~l~i~D~~G~~~~~~--~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~ 126 (207)
..--+.+.||.|+|.|.. +....-+..|-.+++..+++.-+-.. ++.+..... -+.|++++.||+|+.++..
T Consensus 197 ~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~t--kEHLgi~~a--~~lPviVvvTK~D~~~ddr 272 (527)
T COG5258 197 KRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMT--KEHLGIALA--MELPVIVVVTKIDMVPDDR 272 (527)
T ss_pred hhcccEEEEEecCCccHHHHHHHHHHhccccceEEEEEEccCCcchhh--hHhhhhhhh--hcCCEEEEEEecccCcHHH
Confidence 123467999999998854 34455667899999999888554433 233333222 1899999999999976543
Q ss_pred ccc----------C-CCCCccc-CHHHHH--HHHHHh--CCcEEEEeccCCCCCHHHHHHHH
Q 028595 127 YLA----------D-HPGLVPV-TTAQGE--ELRKQI--GASYYIECSSKTQQNVKAVFDAA 172 (207)
Q Consensus 127 ~~~----------~-~~~~~~v-~~~~~~--~~~~~~--~~~~~~e~Sa~~~~~i~~~f~~i 172 (207)
.-+ - ...+..+ +..++. ..+-+. +..|.|.+|+.+|+|++-+.+.+
T Consensus 273 ~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f 334 (527)
T COG5258 273 FQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFF 334 (527)
T ss_pred HHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHH
Confidence 100 0 0000000 111111 111111 24689999999999987655444
No 339
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.29 E-value=6.2e-07 Score=64.20 Aligned_cols=54 Identities=17% Similarity=0.078 Sum_probs=39.6
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEE-EECCeEEEEEEEeCCC
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANV-VAEGTTVNLGLWDTAG 62 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~-~~~~~~~~l~i~D~~G 62 (207)
..+++++|.+++| ||||+|++.+.. ...+.++.+.+...++ ..++ .+.+|||||
T Consensus 101 ~~~~~~ig~~~~G-kssl~~~l~~~~-~~~~~~~~~~t~~~~~~~~~~---~~~~~DtpG 155 (156)
T cd01859 101 EGKVGVVGYPNVG-KSSIINALKGRH-SASTSPSPGYTKGEQLVKITS---KIYLLDTPG 155 (156)
T ss_pred CcEEEEECCCCCC-HHHHHHHHhCCC-ccccCCCCCeeeeeEEEEcCC---CEEEEECcC
Confidence 4689999999999 999999999765 3445566665544332 2332 588999998
No 340
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.28 E-value=7.4e-06 Score=65.15 Aligned_cols=119 Identities=15% Similarity=0.191 Sum_probs=70.8
Q ss_pred ccceeEEEEecccccceeeeeeeccCCCCCcc----------ccCceeeee-eeEEEECCeEEEEEEEeCCCCccc----
Q 028595 2 ELLAKLACLFATQVTSFLLYVLSVSGRSSIWD----------YIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDY---- 66 (207)
Q Consensus 2 ~~~~ki~iiG~~~~GgKssli~~l~~~~~~~~----------~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~---- 66 (207)
...+.|+++|.++.| ||||+|.|++...... ..|++.... ...+.-+|..+.+.++||||.-.+
T Consensus 21 Gi~f~im~~G~sG~G-KttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~idNs 99 (373)
T COG5019 21 GIDFTIMVVGESGLG-KTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFIDNS 99 (373)
T ss_pred CCceEEEEecCCCCc-hhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCcccccccc
Confidence 457899999999999 9999999998754332 223333222 223444678899999999992111
Q ss_pred ---------------------cccccc-eecC--CcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcc
Q 028595 67 ---------------------NRLRPL-SYRG--ADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLR 122 (207)
Q Consensus 67 ---------------------~~~~~~-~~~~--~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~ 122 (207)
....+. -+.+ ++++++....+. ..+..+.-.....+.+ -+.+|-|..|+|.-
T Consensus 100 ~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptg-h~l~~~DIe~Mk~ls~---~vNlIPVI~KaD~l 175 (373)
T COG5019 100 KCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTG-HGLKPLDIEAMKRLSK---RVNLIPVIAKADTL 175 (373)
T ss_pred ccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCC-CCCCHHHHHHHHHHhc---ccCeeeeeeccccC
Confidence 011111 2443 456666555432 2333332244444443 56677777999975
Q ss_pred cCc
Q 028595 123 EDK 125 (207)
Q Consensus 123 ~~~ 125 (207)
..+
T Consensus 176 T~~ 178 (373)
T COG5019 176 TDD 178 (373)
T ss_pred CHH
Confidence 443
No 341
>KOG0410 consensus Predicted GTP binding protein [General function prediction only]
Probab=98.28 E-value=1e-06 Score=68.83 Aligned_cols=147 Identities=15% Similarity=0.064 Sum_probs=90.9
Q ss_pred eEEEEecccccceeeeeeeccCCCCCccc--cCceeeeeeeEEEECCeEEEEEEEeCCCCccc--cccc------cceec
Q 028595 6 KLACLFATQVTSFLLYVLSVSGRSSIWDY--IPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY--NRLR------PLSYR 75 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~--~~~~------~~~~~ 75 (207)
-|.++|-.|+| |||||+.|++..+.+.. -.|...+ ........ .-.+.+.||.|.-.- -.+. -....
T Consensus 180 viavVGYTNaG-KsTLikaLT~Aal~p~drLFATLDpT-~h~a~Lps-g~~vlltDTvGFisdLP~~LvaAF~ATLeeVa 256 (410)
T KOG0410|consen 180 VIAVVGYTNAG-KSTLIKALTKAALYPNDRLFATLDPT-LHSAHLPS-GNFVLLTDTVGFISDLPIQLVAAFQATLEEVA 256 (410)
T ss_pred eEEEEeecCcc-HHHHHHHHHhhhcCccchhheeccch-hhhccCCC-CcEEEEeechhhhhhCcHHHHHHHHHHHHHHh
Confidence 47899999999 99999999965543321 1111111 11122222 234678999883221 1111 12345
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CC----CcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhC
Q 028595 76 GADVFVLAFSLVSRASYENVLKKWIPELQHYS-PG----VPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG 150 (207)
Q Consensus 76 ~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~----~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 150 (207)
.+|.++-|.|+++|+.-+.. ..-+..+.... +. ..++=|-||+|..+.... .+.++
T Consensus 257 eadlllHvvDiShP~ae~q~-e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e------------------~E~n~ 317 (410)
T KOG0410|consen 257 EADLLLHVVDISHPNAEEQR-ETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVE------------------EEKNL 317 (410)
T ss_pred hcceEEEEeecCCccHHHHH-HHHHHHHHhcCCCcHHHHhHHHhhccccccccccCc------------------cccCC
Confidence 68999999999998766655 34444554432 22 234667888887554321 12232
Q ss_pred CcEEEEeccCCCCCHHHHHHHHHHHHh
Q 028595 151 ASYYIECSSKTQQNVKAVFDAAIKVVI 177 (207)
Q Consensus 151 ~~~~~e~Sa~~~~~i~~~f~~i~~~~~ 177 (207)
-+.+||++|+|++++...+-....
T Consensus 318 ---~v~isaltgdgl~el~~a~~~kv~ 341 (410)
T KOG0410|consen 318 ---DVGISALTGDGLEELLKAEETKVA 341 (410)
T ss_pred ---ccccccccCccHHHHHHHHHHHhh
Confidence 478999999999999988876665
No 342
>PRK13796 GTPase YqeH; Provisional
Probab=98.27 E-value=5.6e-06 Score=67.43 Aligned_cols=84 Identities=23% Similarity=0.383 Sum_probs=57.9
Q ss_pred cCCc-EEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHH----HHHHHh
Q 028595 75 RGAD-VFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGE----ELRKQI 149 (207)
Q Consensus 75 ~~~d-~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~----~~~~~~ 149 (207)
..++ .+++|.|+.+... .|...+.+...+.|+++|+||+|+.+... ..+.+. .+++.+
T Consensus 67 ~~~~~lIv~VVD~~D~~~------s~~~~L~~~~~~kpviLViNK~DLl~~~~-----------~~~~i~~~l~~~~k~~ 129 (365)
T PRK13796 67 GDSDALVVNVVDIFDFNG------SWIPGLHRFVGNNPVLLVGNKADLLPKSV-----------KKNKVKNWLRQEAKEL 129 (365)
T ss_pred cccCcEEEEEEECccCCC------chhHHHHHHhCCCCEEEEEEchhhCCCcc-----------CHHHHHHHHHHHHHhc
Confidence 3344 9999999987431 23334444334789999999999965321 333333 345556
Q ss_pred CCc--EEEEeccCCCCCHHHHHHHHHHH
Q 028595 150 GAS--YYIECSSKTQQNVKAVFDAAIKV 175 (207)
Q Consensus 150 ~~~--~~~e~Sa~~~~~i~~~f~~i~~~ 175 (207)
|+. .++.+||+++.|++++++.+.+.
T Consensus 130 g~~~~~v~~vSAk~g~gI~eL~~~I~~~ 157 (365)
T PRK13796 130 GLRPVDVVLISAQKGHGIDELLEAIEKY 157 (365)
T ss_pred CCCcCcEEEEECCCCCCHHHHHHHHHHh
Confidence 652 57899999999999999999764
No 343
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=98.24 E-value=2.2e-05 Score=65.74 Aligned_cols=155 Identities=14% Similarity=0.030 Sum_probs=91.7
Q ss_pred eeEEEEecccccceeeeeeeccCC--CCCc----------------------cccCce-----eeee-eeEEEECCeEEE
Q 028595 5 AKLACLFATQVTSFLLYVLSVSGR--SSIW----------------------DYIPTV-----FDNF-SANVVAEGTTVN 54 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~~--~~~~----------------------~~~~t~-----~~~~-~~~~~~~~~~~~ 54 (207)
...+++|.-.+| ||||+-+++.. .+.. ....|- |.+. .....++.....
T Consensus 178 l~lvv~GhVdaG-KSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~~~~ 256 (603)
T KOG0458|consen 178 LNLVVLGHVDAG-KSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESKSKI 256 (603)
T ss_pred eEEEEEeccccc-hhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecCcee
Confidence 467899999999 99999987622 1111 011111 1112 223344455678
Q ss_pred EEEEeCCCCccccccccceecCCcEEEEEEeCCChhhHHH-H-----HHHHHHHHhhcCCCCcEEEEeeCCCcccCcccc
Q 028595 55 LGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYEN-V-----LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYL 128 (207)
Q Consensus 55 l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~-~-----~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~ 128 (207)
+.|.|.||+..|....-.-...+|+.++|.|++-.+ |+. + .......++... --.++|+.||.|+.+-.+-
T Consensus 257 ~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~-FE~gfd~~gQtrEha~llr~Lg-i~qlivaiNKmD~V~Wsq~- 333 (603)
T KOG0458|consen 257 VTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGE-FESGFDPGGQTREHALLLRSLG-ISQLIVAINKMDLVSWSQD- 333 (603)
T ss_pred EEEecCCCccccchhhhccccccceEEEEEECCcch-hhhccCCCCchHHHHHHHHHcC-cceEEEEeecccccCccHH-
Confidence 899999998887664444455689999999987421 110 0 122222333221 3458999999999764321
Q ss_pred cCCCCCcccCHHHHHHHH-HHhCC----cEEEEeccCCCCCHHHH
Q 028595 129 ADHPGLVPVTTAQGEELR-KQIGA----SYYIECSSKTQQNVKAV 168 (207)
Q Consensus 129 ~~~~~~~~v~~~~~~~~~-~~~~~----~~~~e~Sa~~~~~i~~~ 168 (207)
...........|. +..|+ ..|+++|+.+|+|+...
T Consensus 334 -----RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k~ 373 (603)
T KOG0458|consen 334 -----RFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIKI 373 (603)
T ss_pred -----HHHHHHHHHHHHHHHhcCcccCCcceEecccccCCccccc
Confidence 0001222344455 44443 26999999999998765
No 344
>PRK01889 GTPase RsgA; Reviewed
Probab=98.22 E-value=8.8e-06 Score=66.04 Aligned_cols=85 Identities=20% Similarity=0.181 Sum_probs=60.1
Q ss_pred eecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCc
Q 028595 73 SYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGAS 152 (207)
Q Consensus 73 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 152 (207)
...++|.+++|.++...-+..-+ ..++..+... ++|.+||+||+|+.+.... ..+....+ ..++
T Consensus 109 iaANvD~vliV~s~~p~~~~~~l-dr~L~~a~~~--~i~piIVLNK~DL~~~~~~----------~~~~~~~~--~~g~- 172 (356)
T PRK01889 109 IAANVDTVFIVCSLNHDFNLRRI-ERYLALAWES--GAEPVIVLTKADLCEDAEE----------KIAEVEAL--APGV- 172 (356)
T ss_pred EEEeCCEEEEEEecCCCCChhHH-HHHHHHHHHc--CCCEEEEEEChhcCCCHHH----------HHHHHHHh--CCCC-
Confidence 46899999999999754444444 6777666653 7888999999999654210 11222222 3455
Q ss_pred EEEEeccCCCCCHHHHHHHHH
Q 028595 153 YYIECSSKTQQNVKAVFDAAI 173 (207)
Q Consensus 153 ~~~e~Sa~~~~~i~~~f~~i~ 173 (207)
+.+.+|+.++.|++++..++-
T Consensus 173 ~Vi~vSa~~g~gl~~L~~~L~ 193 (356)
T PRK01889 173 PVLAVSALDGEGLDVLAAWLS 193 (356)
T ss_pred cEEEEECCCCccHHHHHHHhh
Confidence 889999999999999888874
No 345
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=98.17 E-value=1.7e-06 Score=63.00 Aligned_cols=54 Identities=15% Similarity=-0.024 Sum_probs=36.8
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeee-eEEEECCeEEEEEEEeCCC
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAG 62 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~D~~G 62 (207)
..+++++|.+++| ||||+|++.+..... ..+..|.+.. ..+.++. .+.++||||
T Consensus 117 ~~~~~~vG~pnvG-KSslin~l~~~~~~~-~~~~pg~T~~~~~~~~~~---~~~l~DtPG 171 (172)
T cd04178 117 SITVGVVGFPNVG-KSSLINSLKRSRACN-VGATPGVTKSMQEVHLDK---KVKLLDSPG 171 (172)
T ss_pred CcEEEEEcCCCCC-HHHHHHHHhCcccce-ecCCCCeEcceEEEEeCC---CEEEEECcC
Confidence 3689999999999 999999999876422 1222333332 2333332 478999998
No 346
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=98.15 E-value=7e-06 Score=63.48 Aligned_cols=167 Identities=16% Similarity=0.165 Sum_probs=97.1
Q ss_pred ceeEEEEecccccceeeeeeeccCC---CC---Cccc-----cCc---eeeeeee-EEEECCeEEEEEEEeCCCCccccc
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGR---SS---IWDY-----IPT---VFDNFSA-NVVAEGTTVNLGLWDTAGQEDYNR 68 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~---~~---~~~~-----~~t---~~~~~~~-~~~~~~~~~~l~i~D~~G~~~~~~ 68 (207)
..+|..+|--..| ||||-..++.- .. ...| .|. -|.+... -+...-.+-..--.|+||+.+|-.
T Consensus 12 hVNigtiGHvdHG-KTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaDYvK 90 (394)
T COG0050 12 HVNVGTIGHVDHG-KTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYVK 90 (394)
T ss_pred eeEEEEeccccCc-hhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCChHHHHH
Confidence 3689999999999 99998776511 10 0011 111 1111111 111111223345789999998743
Q ss_pred cccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCc-EEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHH
Q 028595 69 LRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVP-VVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRK 147 (207)
Q Consensus 69 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~p-iivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~ 147 (207)
.--.-....|+.|+|.++++...-+.....++ .++. ++| ++++.||+|+.++++.+. .-..+.+.+..
T Consensus 91 NMItgAaqmDgAILVVsA~dGpmPqTrEHiLl--arqv--Gvp~ivvflnK~Dmvdd~elle-------lVemEvreLLs 159 (394)
T COG0050 91 NMITGAAQMDGAILVVAATDGPMPQTREHILL--ARQV--GVPYIVVFLNKVDMVDDEELLE-------LVEMEVRELLS 159 (394)
T ss_pred HHhhhHHhcCccEEEEEcCCCCCCcchhhhhh--hhhc--CCcEEEEEEecccccCcHHHHH-------HHHHHHHHHHH
Confidence 22222334799999999998654444311122 2221 554 578899999988665311 13356788888
Q ss_pred HhCCc----EEEEeccCCC--------CCHHHHHHHHHHHHhCCCcc
Q 028595 148 QIGAS----YYIECSSKTQ--------QNVKAVFDAAIKVVIKPPQK 182 (207)
Q Consensus 148 ~~~~~----~~~e~Sa~~~--------~~i~~~f~~i~~~~~~~~~~ 182 (207)
.|++. |.+.-||+.- ..|.++++.+-..+..++..
T Consensus 160 ~y~f~gd~~Pii~gSal~ale~~~~~~~~i~eLm~avd~yip~Per~ 206 (394)
T COG0050 160 EYGFPGDDTPIIRGSALKALEGDAKWEAKIEELMDAVDSYIPTPERD 206 (394)
T ss_pred HcCCCCCCcceeechhhhhhcCCcchHHHHHHHHHHHHhcCCCCCCc
Confidence 88863 5666676632 23567777776666666543
No 347
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.15 E-value=2.4e-06 Score=67.95 Aligned_cols=116 Identities=16% Similarity=0.110 Sum_probs=72.2
Q ss_pred eEEEEecccccceeeeeeeccCCCCCcc---ccCceeeeeeeEEE------ECCeE------------------------
Q 028595 6 KLACLFATQVTSFLLYVLSVSGRSSIWD---YIPTVFDNFSANVV------AEGTT------------------------ 52 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~~~~~~~---~~~t~~~~~~~~~~------~~~~~------------------------ 52 (207)
-|+++|.-..| |||+|+-|+...+... ..||. +.|...+. ++|..
T Consensus 60 mill~GqyStG-KTtfi~yLle~dypg~riGpEPTt-d~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf~ 137 (532)
T KOG1954|consen 60 MILLVGQYSTG-KTTFIRYLLEQDYPGLRIGPEPTT-DRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRFM 137 (532)
T ss_pred eEEEEeccccc-hhHHHHHHHhCCCCccccCCCCCc-ceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHHH
Confidence 35566655555 9999999998887632 22332 22222111 11111
Q ss_pred ---------EEEEEEeCCCCc-----------cccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcE
Q 028595 53 ---------VNLGLWDTAGQE-----------DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPV 112 (207)
Q Consensus 53 ---------~~l~i~D~~G~~-----------~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~pi 112 (207)
-.+.|.||||-- .|.....=|...+|.+|++||.-..+-..+. ...+..+... +-.+
T Consensus 138 csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf-~~vi~aLkG~--Edki 214 (532)
T KOG1954|consen 138 CSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEF-KRVIDALKGH--EDKI 214 (532)
T ss_pred HhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHH-HHHHHHhhCC--ccee
Confidence 356799999921 1223334456789999999998877666666 4555555443 4558
Q ss_pred EEEeeCCCcccCcc
Q 028595 113 VLVGTKLDLREDKH 126 (207)
Q Consensus 113 ivv~nK~D~~~~~~ 126 (207)
-||+||+|..+.++
T Consensus 215 RVVLNKADqVdtqq 228 (532)
T KOG1954|consen 215 RVVLNKADQVDTQQ 228 (532)
T ss_pred EEEeccccccCHHH
Confidence 89999999876544
No 348
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.14 E-value=2.3e-06 Score=61.38 Aligned_cols=54 Identities=9% Similarity=-0.037 Sum_probs=34.9
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeee-EEEECCeEEEEEEEeCCC
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSA-NVVAEGTTVNLGLWDTAG 62 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~l~i~D~~G 62 (207)
...|+++|.+|+| ||||+|++.+..... ..++.|.+... .+..++ .+.+.||||
T Consensus 102 ~~~v~~~G~~nvG-KStliN~l~~~~~~~-~~~~~g~T~~~~~~~~~~---~~~liDtPG 156 (157)
T cd01858 102 QISVGFIGYPNVG-KSSIINTLRSKKVCK-VAPIPGETKVWQYITLMK---RIYLIDCPG 156 (157)
T ss_pred ceEEEEEeCCCCC-hHHHHHHHhcCCcee-eCCCCCeeEeEEEEEcCC---CEEEEECcC
Confidence 3568899999999 999999999875422 12222322222 222222 257999998
No 349
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.14 E-value=1.7e-06 Score=62.98 Aligned_cols=54 Identities=11% Similarity=-0.044 Sum_probs=37.7
Q ss_pred eeEEEEecccccceeeeeeeccCCCCCccccCceeeeeee-EEEECCeEEEEEEEeCCCC
Q 028595 5 AKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSA-NVVAEGTTVNLGLWDTAGQ 63 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~l~i~D~~G~ 63 (207)
.+++++|.+++| ||||+|++.+..+. ...+..+.+... .+.++ ..+.+|||||-
T Consensus 116 ~~~~~~G~~~vG-Kstlin~l~~~~~~-~~~~~~~~T~~~~~~~~~---~~~~~iDtpG~ 170 (171)
T cd01856 116 IRAMVVGIPNVG-KSTLINRLRGKKVA-KVGNKPGVTKGIQWIKIS---PGIYLLDTPGI 170 (171)
T ss_pred eEEEEECCCCCC-HHHHHHHHhCCCce-eecCCCCEEeeeEEEEec---CCEEEEECCCC
Confidence 589999999999 99999999987753 222333333322 34443 34789999993
No 350
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.08 E-value=4.2e-05 Score=59.84 Aligned_cols=98 Identities=19% Similarity=0.184 Sum_probs=74.5
Q ss_pred cccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHH
Q 028595 65 DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEE 144 (207)
Q Consensus 65 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~ 144 (207)
+...+.+--..+.|-.++|+++.+|+--..++..++-..+.. ++..+|+.||+|+.++... ..++...
T Consensus 68 Rkn~L~Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~~--gi~pvIvlnK~DL~~~~~~----------~~~~~~~ 135 (301)
T COG1162 68 RKNVLIRPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEAG--GIEPVIVLNKIDLLDDEEA----------AVKELLR 135 (301)
T ss_pred ccCceeCCcccccceEEEEEeccCCCCCHHHHHHHHHHHHHc--CCcEEEEEEccccCcchHH----------HHHHHHH
Confidence 444555566667888888898888876666667887777664 7888889999999877642 2245666
Q ss_pred HHHHhCCcEEEEeccCCCCCHHHHHHHHHHH
Q 028595 145 LRKQIGASYYIECSSKTQQNVKAVFDAAIKV 175 (207)
Q Consensus 145 ~~~~~~~~~~~e~Sa~~~~~i~~~f~~i~~~ 175 (207)
....+|+ +.+.+|++++.+++++...+...
T Consensus 136 ~y~~~gy-~v~~~s~~~~~~~~~l~~~l~~~ 165 (301)
T COG1162 136 EYEDIGY-PVLFVSAKNGDGLEELAELLAGK 165 (301)
T ss_pred HHHhCCe-eEEEecCcCcccHHHHHHHhcCC
Confidence 7777888 89999999999999998877544
No 351
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.07 E-value=4.8e-05 Score=60.94 Aligned_cols=143 Identities=13% Similarity=0.060 Sum_probs=82.1
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCCcc---------ccCceeeee-eeEEEECCeEEEEEEEeCCCCccc-------
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSIWD---------YIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDY------- 66 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~---------~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~------- 66 (207)
.+.++++|.++.| ||||+|+|+...+... ...|..... ...+.-+|..+.|++.||||.-+.
T Consensus 21 ~ftlmvvG~sGlG-KsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~vdns~~w 99 (366)
T KOG2655|consen 21 DFTLMVVGESGLG-KSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAVDNSNCW 99 (366)
T ss_pred ceEEEEecCCCcc-HHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccccccccc
Confidence 4789999999999 9999999987754322 111222222 123333678899999999992110
Q ss_pred ------------------cccccceec--CCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcc
Q 028595 67 ------------------NRLRPLSYR--GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKH 126 (207)
Q Consensus 67 ------------------~~~~~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~ 126 (207)
..+.+..+. .++++++....+.. .+..+.-.+...+. ..+++|-|..|+|.....+
T Consensus 100 ~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~gh-gL~p~Di~~Mk~l~---~~vNiIPVI~KaD~lT~~E 175 (366)
T KOG2655|consen 100 RPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGH-GLKPLDIEFMKKLS---KKVNLIPVIAKADTLTKDE 175 (366)
T ss_pred hhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCC-CCcHhhHHHHHHHh---ccccccceeeccccCCHHH
Confidence 112233444 45677776665542 12222123344443 3677777789999765443
Q ss_pred cccCCCCCcccCHHHHHHHHHHhCCcEEEEeccC
Q 028595 127 YLADHPGLVPVTTAQGEELRKQIGASYYIECSSK 160 (207)
Q Consensus 127 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 160 (207)
. ......+.+-...+++ +.|.....
T Consensus 176 l--------~~~K~~I~~~i~~~nI-~vf~fp~~ 200 (366)
T KOG2655|consen 176 L--------NQFKKRIRQDIEEHNI-KVFDFPTD 200 (366)
T ss_pred H--------HHHHHHHHHHHHHcCc-ceecCCCC
Confidence 1 0133445556666676 55544433
No 352
>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]
Probab=98.04 E-value=0.00015 Score=58.16 Aligned_cols=154 Identities=18% Similarity=0.081 Sum_probs=86.9
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCCc------------------cccCceeeee-------------------eeEE
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSIW------------------DYIPTVFDNF-------------------SANV 46 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~------------------~~~~t~~~~~-------------------~~~~ 46 (207)
..+|+++|+-.+| ||||+--|+.+.++. .-.+.+|.+. ...+
T Consensus 133 E~RVAVVGNVDAG-KSTLLGVLTHgeLDnGRG~ARqkLFRHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWv 211 (641)
T KOG0463|consen 133 EARVAVVGNVDAG-KSTLLGVLTHGELDNGRGAARQKLFRHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWV 211 (641)
T ss_pred eEEEEEEecccCC-cceeEeeeeecccccCccHHHHHHhhhhhhcccCccccccccceeeccccccccCCCCCCCcccce
Confidence 5689999999999 999999887665432 0111122111 0011
Q ss_pred EE-CCeEEEEEEEeCCCCcccccccc--ceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCccc
Q 028595 47 VA-EGTTVNLGLWDTAGQEDYNRLRP--LSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRE 123 (207)
Q Consensus 47 ~~-~~~~~~l~i~D~~G~~~~~~~~~--~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~ 123 (207)
.+ .+..-.+.++|.+|+|+|....- +.-.-.|...++.-.+-.- .-.. ++.+.+.-.. .+|+.+|.+|+|.++
T Consensus 212 kIce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~MLMiGaNaGI-iGmT-KEHLgLALaL--~VPVfvVVTKIDMCP 287 (641)
T KOG0463|consen 212 KICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTMLMIGANAGI-IGMT-KEHLGLALAL--HVPVFVVVTKIDMCP 287 (641)
T ss_pred eeccccceeEEEEeccchhhhhheeeeccccCCCCceEEEecccccc-eecc-HHhhhhhhhh--cCcEEEEEEeeccCc
Confidence 11 11234578999999999865332 2222356666666543211 1111 2222222211 799999999999987
Q ss_pred CcccccCCCCCcccCHHHHHHHHHHhCC-------------------------cEEEEeccCCCCCHHHHHH
Q 028595 124 DKHYLADHPGLVPVTTAQGEELRKQIGA-------------------------SYYIECSSKTQQNVKAVFD 170 (207)
Q Consensus 124 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~-------------------------~~~~e~Sa~~~~~i~~~f~ 170 (207)
.+.. +.+......+.+..|+ .|+|.+|..+|.|++-+-.
T Consensus 288 ANiL--------qEtmKll~rllkS~gcrK~PvlVrs~DDVv~~A~NF~Ser~CPIFQvSNVtG~NL~LLkm 351 (641)
T KOG0463|consen 288 ANIL--------QETMKLLTRLLKSPGCRKLPVLVRSMDDVVHAAVNFPSERVCPIFQVSNVTGTNLPLLKM 351 (641)
T ss_pred HHHH--------HHHHHHHHHHhcCCCcccCcEEEecccceEEeeccCccccccceEEeccccCCChHHHHH
Confidence 6531 0022233333333222 3688999999999875433
No 353
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.01 E-value=4.8e-06 Score=65.29 Aligned_cols=55 Identities=13% Similarity=-0.055 Sum_probs=37.2
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCC
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQ 63 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~ 63 (207)
..+++++|.+++| ||||+|++.+.+.... .+..|.+. ...+.++. .+.++||||-
T Consensus 118 ~~~~~~vG~~nvG-KSslin~l~~~~~~~~-~~~~g~T~~~~~~~~~~---~~~l~DtPG~ 173 (276)
T TIGR03596 118 PIRAMIVGIPNVG-KSTLINRLAGKKVAKV-GNRPGVTKGQQWIKLSD---GLELLDTPGI 173 (276)
T ss_pred CeEEEEECCCCCC-HHHHHHHHhCCCcccc-CCCCCeecceEEEEeCC---CEEEEECCCc
Confidence 3679999999999 9999999997764322 22223222 22333332 4689999996
No 354
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=97.99 E-value=2.6e-05 Score=66.53 Aligned_cols=118 Identities=14% Similarity=0.060 Sum_probs=74.2
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCCcc-ccCceeee-----------------------------------------
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSIWD-YIPTVFDN----------------------------------------- 41 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~-~~~t~~~~----------------------------------------- 41 (207)
..||++.|+.+.| |||++|..+-.++.++ .-|++...
T Consensus 109 ~mKV~ifGrts~G-KSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~~ 187 (749)
T KOG0448|consen 109 HMKVAIFGRTSAG-KSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDLG 187 (749)
T ss_pred ccEEEEeCCCCCc-HHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCcccccC
Confidence 3599999999999 9999999886665432 11221100
Q ss_pred --eeeEEEECCe-----EEEEEEEeCCCCc---cccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCc
Q 028595 42 --FSANVVAEGT-----TVNLGLWDTAGQE---DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVP 111 (207)
Q Consensus 42 --~~~~~~~~~~-----~~~l~i~D~~G~~---~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~p 111 (207)
-...+..+.. .-.+.+.|.||-+ ...+-...+..++|++|+|.+..+.....+- .++....+. ++.
T Consensus 188 ~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~sek--~Ff~~vs~~--Kpn 263 (749)
T KOG0448|consen 188 AGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSEK--QFFHKVSEE--KPN 263 (749)
T ss_pred cceEEEEEecCccchhhhccceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHHH--HHHHHhhcc--CCc
Confidence 0001111111 0134577888843 3344556677889999999999997777764 555454443 455
Q ss_pred EEEEeeCCCcccCcc
Q 028595 112 VVLVGTKLDLREDKH 126 (207)
Q Consensus 112 iivv~nK~D~~~~~~ 126 (207)
+.|+-||+|...+..
T Consensus 264 iFIlnnkwDasase~ 278 (749)
T KOG0448|consen 264 IFILNNKWDASASEP 278 (749)
T ss_pred EEEEechhhhhcccH
Confidence 778888989876543
No 355
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=97.97 E-value=7.6e-06 Score=64.53 Aligned_cols=56 Identities=13% Similarity=-0.064 Sum_probs=38.1
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeee-EEEECCeEEEEEEEeCCCCc
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSA-NVVAEGTTVNLGLWDTAGQE 64 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~l~i~D~~G~~ 64 (207)
..+++++|.++|| ||||+|++.+.+... ..+..|.+... .+.+++ .+.++||||--
T Consensus 121 ~~~~~~~G~pnvG-KSsliN~l~~~~~~~-~~~~~g~T~~~~~~~~~~---~~~l~DtPGi~ 177 (287)
T PRK09563 121 AIRAMIIGIPNVG-KSTLINRLAGKKIAK-TGNRPGVTKAQQWIKLGK---GLELLDTPGIL 177 (287)
T ss_pred ceEEEEECCCCCC-HHHHHHHHhcCCccc-cCCCCCeEEEEEEEEeCC---cEEEEECCCcC
Confidence 3589999999999 999999999876422 12233333322 333333 36799999963
No 356
>COG1161 Predicted GTPases [General function prediction only]
Probab=97.94 E-value=5.8e-06 Score=66.16 Aligned_cols=55 Identities=11% Similarity=-0.008 Sum_probs=39.9
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeee-EEEECCeEEEEEEEeCCCC
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSA-NVVAEGTTVNLGLWDTAGQ 63 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~l~i~D~~G~ 63 (207)
..++.++|-+||| ||||||+|.+.+.. ...+..|.+... .+.++.. +.|+||||-
T Consensus 132 ~~~v~vvG~PNVG-KSslIN~L~~k~~~-~~s~~PG~Tk~~q~i~~~~~---i~LlDtPGi 187 (322)
T COG1161 132 KIRVGVVGYPNVG-KSTLINRLLGKKVA-KTSNRPGTTKGIQWIKLDDG---IYLLDTPGI 187 (322)
T ss_pred ceEEEEEcCCCCc-HHHHHHHHhcccce-eeCCCCceecceEEEEcCCC---eEEecCCCc
Confidence 3679999999999 99999999998853 333333555533 4444442 789999994
No 357
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=97.91 E-value=4.7e-06 Score=61.66 Aligned_cols=54 Identities=15% Similarity=0.065 Sum_probs=34.7
Q ss_pred eeEEEEecccccceeeeeeeccCCCCCc-------cccCceeeee-eeEEEECCeEEEEEEEeCCC
Q 028595 5 AKLACLFATQVTSFLLYVLSVSGRSSIW-------DYIPTVFDNF-SANVVAEGTTVNLGLWDTAG 62 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~~~~~~-------~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G 62 (207)
..++++|.+|+| ||||+|++.+..... ...+..|.+. ...+.++. .+.++||||
T Consensus 128 ~~~~~~G~~nvG-KStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~---~~~~~DtPG 189 (190)
T cd01855 128 GDVYVVGATNVG-KSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN---GKKLYDTPG 189 (190)
T ss_pred CcEEEEcCCCCC-HHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCC---CCEEEeCcC
Confidence 578999999999 999999999754311 1111112222 22333332 468999998
No 358
>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]
Probab=97.91 E-value=2.3e-05 Score=67.52 Aligned_cols=113 Identities=13% Similarity=0.071 Sum_probs=78.2
Q ss_pred cceeEEEEecccccceeeeeeeccCCC--CCcc------cc------Cceeeee-eeEEEECCeEEEEEEEeCCCCcccc
Q 028595 3 LLAKLACLFATQVTSFLLYVLSVSGRS--SIWD------YI------PTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYN 67 (207)
Q Consensus 3 ~~~ki~iiG~~~~GgKssli~~l~~~~--~~~~------~~------~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~ 67 (207)
...++|++.--..| ||||+.+|...+ +... +. .+-|.+. +..+..-.+.+.++++|.||+-+|.
T Consensus 8 ~irn~~~vahvdhg-ktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf~ 86 (887)
T KOG0467|consen 8 GIRNICLVAHVDHG-KTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDFS 86 (887)
T ss_pred ceeEEEEEEEecCC-ccchHHHHHhhccEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCccchh
Confidence 45689999999999 999999987433 1111 11 1112222 1123333356889999999999999
Q ss_pred ccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCC
Q 028595 68 RLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLD 120 (207)
Q Consensus 68 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D 120 (207)
+.......-+|+++.+.|+...-..+.. ..+.+... .+...++|.||+|
T Consensus 87 sevssas~l~d~alvlvdvvegv~~qt~-~vlrq~~~---~~~~~~lvinkid 135 (887)
T KOG0467|consen 87 SEVSSASRLSDGALVLVDVVEGVCSQTY-AVLRQAWI---EGLKPILVINKID 135 (887)
T ss_pred hhhhhhhhhcCCcEEEEeeccccchhHH-HHHHHHHH---ccCceEEEEehhh
Confidence 9999999999999999999876555544 22222221 3677899999999
No 359
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=97.84 E-value=5.8e-05 Score=58.73 Aligned_cols=103 Identities=15% Similarity=0.148 Sum_probs=64.9
Q ss_pred EEEEEEEeCCC--CccccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCccccc
Q 028595 52 TVNLGLWDTAG--QEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA 129 (207)
Q Consensus 52 ~~~l~i~D~~G--~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~ 129 (207)
.+.+.|..|.| |.. -....-+|.+++|.-..-.+..+-+..-.+ + +-=++|.||.|....+..
T Consensus 143 G~DvIIVETVGvGQse-----v~I~~~aDt~~~v~~pg~GD~~Q~iK~Gim-E-------iaDi~vINKaD~~~A~~a-- 207 (323)
T COG1703 143 GYDVIIVETVGVGQSE-----VDIANMADTFLVVMIPGAGDDLQGIKAGIM-E-------IADIIVINKADRKGAEKA-- 207 (323)
T ss_pred CCCEEEEEecCCCcch-----hHHhhhcceEEEEecCCCCcHHHHHHhhhh-h-------hhheeeEeccChhhHHHH--
Confidence 37778888866 433 223445899999988777777776632222 2 223788999996554321
Q ss_pred CCCCCcccCHHH--HHHHH----HHhCC-cEEEEeccCCCCCHHHHHHHHHHHHh
Q 028595 130 DHPGLVPVTTAQ--GEELR----KQIGA-SYYIECSSKTQQNVKAVFDAAIKVVI 177 (207)
Q Consensus 130 ~~~~~~~v~~~~--~~~~~----~~~~~-~~~~e~Sa~~~~~i~~~f~~i~~~~~ 177 (207)
..+. +..+. ...++ ++.+.+||.+|+|++++++.+.+...
T Consensus 208 --------~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~ 254 (323)
T COG1703 208 --------ARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRK 254 (323)
T ss_pred --------HHHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHH
Confidence 1111 11111 11121 47889999999999999999987664
No 360
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=97.82 E-value=0.00098 Score=54.55 Aligned_cols=156 Identities=13% Similarity=0.167 Sum_probs=95.4
Q ss_pred eeEEEEecccccceeeeeeeccCCCCCc---------------------cccCceeeee----eeEEEE-CCeEEEEEEE
Q 028595 5 AKLACLFATQVTSFLLYVLSVSGRSSIW---------------------DYIPTVFDNF----SANVVA-EGTTVNLGLW 58 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~~~~~~---------------------~~~~t~~~~~----~~~~~~-~~~~~~l~i~ 58 (207)
++|.++|+-..| |||||.||...-..+ ...-|...-| ...+.+ ++-.+.+.+.
T Consensus 18 IYiGVVGPVRTG-KSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVRLi 96 (492)
T PF09547_consen 18 IYIGVVGPVRTG-KSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVRLI 96 (492)
T ss_pred eEEEeecCcccC-chhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEEEE
Confidence 689999999999 999999997432211 0111111111 113344 4668999999
Q ss_pred eCCC--------C-----------cccccc----------ccceecC-C-cEEEEEEeCC----ChhhHHHHHHHHHHHH
Q 028595 59 DTAG--------Q-----------EDYNRL----------RPLSYRG-A-DVFVLAFSLV----SRASYENVLKKWIPEL 103 (207)
Q Consensus 59 D~~G--------~-----------~~~~~~----------~~~~~~~-~-d~~i~v~d~~----~~~s~~~~~~~~~~~i 103 (207)
|+.| . ++|..- .+..++. + =++++.-|-+ .++++.++.....+++
T Consensus 97 DCVGy~V~gA~Gy~e~~~pRmV~TPWfd~eIPF~eAAeiGT~KVI~dHSTIGiVVTTDGSi~dipRe~Y~eAEervI~EL 176 (492)
T PF09547_consen 97 DCVGYMVEGALGYEEEEGPRMVKTPWFDEEIPFEEAAEIGTRKVITDHSTIGIVVTTDGSITDIPRENYVEAEERVIEEL 176 (492)
T ss_pred eecceeecCccccccCCCceeecCCCCCCCCCHHHHHhhcccceeccCCceeEEEecCCCccCCChHHHHHHHHHHHHHH
Confidence 9876 1 111110 0111222 1 2333333332 4788888877778888
Q ss_pred hhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccC--CCCCHHHHHHHHHHHH
Q 028595 104 QHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK--TQQNVKAVFDAAIKVV 176 (207)
Q Consensus 104 ~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~--~~~~i~~~f~~i~~~~ 176 (207)
... ++|+++++|-.+= ...+ +.+.+.++.++|+. +.+.+++. +.++|..+++.++...
T Consensus 177 k~i--gKPFvillNs~~P-~s~e-----------t~~L~~eL~ekY~v-pVlpvnc~~l~~~DI~~Il~~vLyEF 236 (492)
T PF09547_consen 177 KEI--GKPFVILLNSTKP-YSEE-----------TQELAEELEEKYDV-PVLPVNCEQLREEDITRILEEVLYEF 236 (492)
T ss_pred HHh--CCCEEEEEeCCCC-CCHH-----------HHHHHHHHHHHhCC-cEEEeehHHcCHHHHHHHHHHHHhcC
Confidence 775 8999999998763 2222 67788899999998 77776654 4455666666555443
No 361
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=97.80 E-value=1.1e-05 Score=61.62 Aligned_cols=101 Identities=14% Similarity=0.105 Sum_probs=62.5
Q ss_pred EEEEEEeCCC--CccccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccC
Q 028595 53 VNLGLWDTAG--QEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLAD 130 (207)
Q Consensus 53 ~~l~i~D~~G--~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~ 130 (207)
+.+.|.+|.| |... ....-+|.+++|....-.+..+-+..-.+ + +.=++|.||.|....+.
T Consensus 122 ~D~IiiETVGvGQsE~-----~I~~~aD~~v~v~~Pg~GD~iQ~~KaGim-E-------iaDi~vVNKaD~~gA~~---- 184 (266)
T PF03308_consen 122 FDVIIIETVGVGQSEV-----DIADMADTVVLVLVPGLGDEIQAIKAGIM-E-------IADIFVVNKADRPGADR---- 184 (266)
T ss_dssp -SEEEEEEESSSTHHH-----HHHTTSSEEEEEEESSTCCCCCTB-TTHH-H-------H-SEEEEE--SHHHHHH----
T ss_pred CCEEEEeCCCCCccHH-----HHHHhcCeEEEEecCCCccHHHHHhhhhh-h-------hccEEEEeCCChHHHHH----
Confidence 6677888855 5442 23445899999998877666665522222 2 23378889999765543
Q ss_pred CCCCcccCHHHHHHHHHHhC------CcEEEEeccCCCCCHHHHHHHHHHHHh
Q 028595 131 HPGLVPVTTAQGEELRKQIG------ASYYIECSSKTQQNVKAVFDAAIKVVI 177 (207)
Q Consensus 131 ~~~~~~v~~~~~~~~~~~~~------~~~~~e~Sa~~~~~i~~~f~~i~~~~~ 177 (207)
...+.+....... .+|.+.+||.++.|++++++.+.+...
T Consensus 185 -------~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~~ 230 (266)
T PF03308_consen 185 -------TVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHRD 230 (266)
T ss_dssp -------HHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 3344444433221 148999999999999999999886543
No 362
>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]
Probab=97.79 E-value=9.1e-05 Score=56.49 Aligned_cols=84 Identities=15% Similarity=0.175 Sum_probs=53.0
Q ss_pred eeEEEEecccccceeeeeeeccCCCC-CccccCceeeeeeeEEEECC----eEEEEEEEeCCCCc----ccccc---ccc
Q 028595 5 AKLACLFATQVTSFLLYVLSVSGRSS-IWDYIPTVFDNFSANVVAEG----TTVNLGLWDTAGQE----DYNRL---RPL 72 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~~~~-~~~~~~t~~~~~~~~~~~~~----~~~~l~i~D~~G~~----~~~~~---~~~ 72 (207)
.++.++|.+.+| |||++..+.+... .+.|. ++..+.+.| +.-++++.|.||-- +-+.- .-.
T Consensus 60 a~vg~vgFPSvG-ksTl~~~l~g~~s~vasye------fttl~~vpG~~~y~gaKiqlldlpgiiegakdgkgrg~qvia 132 (358)
T KOG1487|consen 60 ARVGFVGFPSVG-KSTLLSKLTGTFSEVAAYE------FTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRGKQVIA 132 (358)
T ss_pred eeeeEEecCccc-hhhhhhhhcCCCCcccccc------ceeEEEecceEeccccceeeecCcchhcccccCCCCccEEEE
Confidence 478999999999 9999999987642 12222 233333333 23578999999821 11111 222
Q ss_pred eecCCcEEEEEEeCCChhhHHHH
Q 028595 73 SYRGADVFVLAFSLVSRASYENV 95 (207)
Q Consensus 73 ~~~~~d~~i~v~d~~~~~s~~~~ 95 (207)
..+-+..+++|.|+..+-+-..+
T Consensus 133 vartcnli~~vld~~kp~~hk~~ 155 (358)
T KOG1487|consen 133 VARTCNLIFIVLDVLKPLSHKKI 155 (358)
T ss_pred EeecccEEEEEeeccCcccHHHH
Confidence 34568899999998775544433
No 363
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=97.76 E-value=4e-05 Score=62.00 Aligned_cols=82 Identities=11% Similarity=-0.053 Sum_probs=55.1
Q ss_pred eeEEEEecccccceeeeeeeccCCCC-C-ccccCceeeeeeeEEEECCe---------------EEEEEEEeCCCCcc--
Q 028595 5 AKLACLFATQVTSFLLYVLSVSGRSS-I-WDYIPTVFDNFSANVVAEGT---------------TVNLGLWDTAGQED-- 65 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~~~~-~-~~~~~t~~~~~~~~~~~~~~---------------~~~l~i~D~~G~~~-- 65 (207)
.|+.++|.+++| ||||.|.+++... . ..|..|+.......+.+.+. ...+.+.|+||--.
T Consensus 3 lk~GivGlPn~G-KSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gA 81 (368)
T TIGR00092 3 LSGGIVGLPNVG-KSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGA 81 (368)
T ss_pred ceEEEECCCCCC-hHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccch
Confidence 689999999999 9999999998875 3 23443333333333444331 24678999998433
Q ss_pred --cccccc---ceecCCcEEEEEEeCC
Q 028595 66 --YNRLRP---LSYRGADVFVLAFSLV 87 (207)
Q Consensus 66 --~~~~~~---~~~~~~d~~i~v~d~~ 87 (207)
-..+.. ..++++|+++.|.+..
T Consensus 82 s~g~Glgn~fL~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 82 SKGEGLGNQFLANIREVDIIQHVVRCF 108 (368)
T ss_pred hcccCcchHHHHHHHhCCEEEEEEeCC
Confidence 222323 3467899999999975
No 364
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=97.73 E-value=2.8e-05 Score=55.60 Aligned_cols=53 Identities=13% Similarity=0.066 Sum_probs=34.6
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCCc--cccCceeeeeeeEEEECCeEEEEEEEeCCC
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSIW--DYIPTVFDNFSANVVAEGTTVNLGLWDTAG 62 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G 62 (207)
...++++|.+++| ||||+|.+.+..... ....|... ...+..+ ..+.++||||
T Consensus 100 ~~~~~~~G~~~~G-Kstlin~l~~~~~~~~~~~~~~t~~--~~~~~~~---~~~~liDtPG 154 (155)
T cd01849 100 SITVGVIGYPNVG-KSSVINALLNKLKLKVGNVPGTTTS--QQEVKLD---NKIKLLDTPG 154 (155)
T ss_pred CcEEEEEccCCCC-HHHHHHHHHccccccccCCCCcccc--eEEEEec---CCEEEEECCC
Confidence 3568999999999 999999999865321 11222211 1222222 3478999998
No 365
>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]
Probab=97.66 E-value=0.00058 Score=57.88 Aligned_cols=116 Identities=15% Similarity=0.045 Sum_probs=77.5
Q ss_pred ccceeEEEEecccccceeeeeeeccCCC--CC--cc--ccCce----------eeee-eeEEEECCeEEEEEEEeCCCCc
Q 028595 2 ELLAKLACLFATQVTSFLLYVLSVSGRS--SI--WD--YIPTV----------FDNF-SANVVAEGTTVNLGLWDTAGQE 64 (207)
Q Consensus 2 ~~~~ki~iiG~~~~GgKssli~~l~~~~--~~--~~--~~~t~----------~~~~-~~~~~~~~~~~~l~i~D~~G~~ 64 (207)
+...+|.++.--.+| |||+-.+.+... .. .+ ...++ |.+. +......-..+.++|+||||+-
T Consensus 37 ~k~RNIgi~Ahidsg-KTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHv 115 (721)
T KOG0465|consen 37 NKIRNIGISAHIDAG-KTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHV 115 (721)
T ss_pred hhhcccceEEEEecC-CceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCce
Confidence 345677888888889 999998876332 11 00 00111 1111 1111122236889999999999
Q ss_pred cccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcc
Q 028595 65 DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLR 122 (207)
Q Consensus 65 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~ 122 (207)
+|.--.+..++--|++++|.+....-..+.. ..|.++- ++ ++|.+...||.|.-
T Consensus 116 DFT~EVeRALrVlDGaVlvl~aV~GVqsQt~-tV~rQ~~-ry--~vP~i~FiNKmDRm 169 (721)
T KOG0465|consen 116 DFTFEVERALRVLDGAVLVLDAVAGVESQTE-TVWRQMK-RY--NVPRICFINKMDRM 169 (721)
T ss_pred eEEEEehhhhhhccCeEEEEEcccceehhhH-HHHHHHH-hc--CCCeEEEEehhhhc
Confidence 9988889999999999999998766555544 5666553 33 89999999999964
No 366
>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.65 E-value=0.00011 Score=57.30 Aligned_cols=115 Identities=15% Similarity=0.145 Sum_probs=72.8
Q ss_pred EEEEEeCCCCccccccccceecCCcEEEEEEeCCC----hhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCccccc
Q 028595 54 NLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVS----RASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA 129 (207)
Q Consensus 54 ~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~ 129 (207)
.+.+.|+||++..-+.--.-..-.|+++++...+. +++.+++ . .-++.+ =..++++-||+|+..+.+..
T Consensus 126 HVSfVDCPGHDiLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHL-a--aveiM~---LkhiiilQNKiDli~e~~A~- 198 (466)
T KOG0466|consen 126 HVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHL-A--AVEIMK---LKHIIILQNKIDLIKESQAL- 198 (466)
T ss_pred EEEeccCCchHHHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHH-H--HHHHhh---hceEEEEechhhhhhHHHHH-
Confidence 45788999987643211111222477777776553 4555544 1 112222 36799999999997665410
Q ss_pred CCCCCcccCHHHHHHHHHHhC--CcEEEEeccCCCCCHHHHHHHHHHHHhCCCcc
Q 028595 130 DHPGLVPVTTAQGEELRKQIG--ASYYIECSSKTQQNVKAVFDAAIKVVIKPPQK 182 (207)
Q Consensus 130 ~~~~~~~v~~~~~~~~~~~~~--~~~~~e~Sa~~~~~i~~~f~~i~~~~~~~~~~ 182 (207)
...++++.|.+.-. ..|.+.+||.-+.||+-+.+.++.++.-+..+
T Consensus 199 -------eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPvPvRd 246 (466)
T KOG0466|consen 199 -------EQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPVPVRD 246 (466)
T ss_pred -------HHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCCCCccc
Confidence 02344555554321 24899999999999999999999999876543
No 367
>KOG4273 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.64 E-value=0.00074 Score=51.37 Aligned_cols=170 Identities=14% Similarity=0.131 Sum_probs=98.6
Q ss_pred CccceeEEEEecccc--cceeeeeeeccCCCCCccccCceeeeeeeEEEECCeE----EEEEEEeCCCCcccccccccee
Q 028595 1 MELLAKLACLFATQV--TSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTT----VNLGLWDTAGQEDYNRLRPLSY 74 (207)
Q Consensus 1 m~~~~ki~iiG~~~~--GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~----~~l~i~D~~G~~~~~~~~~~~~ 74 (207)
|+-+-=+++.|.++| | |.+|++++....+..+....-...+. --.++.+. +.+.|.-. ..+.+... ....
T Consensus 1 ~~~rp~~lv~g~sgvfsg-~~~ll~rl~s~dfed~ses~~~te~h-gwtid~kyysadi~lcishi-cde~~lpn-~~~a 76 (418)
T KOG4273|consen 1 AAGRPCALVTGCSGVFSG-DQLLLHRLGSEDFEDESESNDATEFH-GWTIDNKYYSADINLCISHI-CDEKFLPN-AEIA 76 (418)
T ss_pred CCCCceEEEecccccccc-hHHHHHHhcchhheeeccccCceeee-ceEecceeeecceeEEeecc-cchhccCC-cccc
Confidence 444556788999998 8 99999999877765543333222221 11223322 22332221 11222111 1122
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcc-------c-------------------c
Q 028595 75 RGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKH-------Y-------------------L 128 (207)
Q Consensus 75 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~-------~-------------------~ 128 (207)
.-..+++.|||++....+..+ ..|+.--.-+.-+ -.+.+|||.|..+..- . +
T Consensus 77 ~pl~a~vmvfdlse~s~l~al-qdwl~htdinsfd-illcignkvdrvphhlahdeyrrrl~kasdpsrdl~~di~dfgi 154 (418)
T KOG4273|consen 77 EPLQAFVMVFDLSEKSGLDAL-QDWLPHTDINSFD-ILLCIGNKVDRVPHHLAHDEYRRRLAKASDPSRDLMIDICDFGI 154 (418)
T ss_pred cceeeEEEEEeccchhhhHHH-Hhhccccccccch-hheecccccccccchhhhhHHHHHHHhhcCcchhHhhhhhhccc
Confidence 335799999999999999888 7887532211112 2467899999764211 0 0
Q ss_pred cCCC--------CCcccCHHHHHHHHHHhCCcEEEEeccCC------------CCCHHHHHHHHHHHHh
Q 028595 129 ADHP--------GLVPVTTAQGEELRKQIGASYYIECSSKT------------QQNVKAVFDAAIKVVI 177 (207)
Q Consensus 129 ~~~~--------~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~------------~~~i~~~f~~i~~~~~ 177 (207)
.+.. ...-.....+.+||.++|+ .|++.+|.+ .+|++.+|..+-...-
T Consensus 155 setegssllgsedasldirga~lewc~e~~~-efieacasn~dfd~c~~~dgdsqgverifgal~ahmw 222 (418)
T KOG4273|consen 155 SETEGSSLLGSEDASLDIRGAALEWCLEHGF-EFIEACASNEDFDECDDDDGDSQGVERIFGALNAHMW 222 (418)
T ss_pred cccccccccccccchhhHHHHHHHHHHhcCc-eeeeecCCccccchhhccCcchhhHHHHHHHhhhccC
Confidence 0000 0111234568899999998 999988853 3688999988866543
No 368
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=97.63 E-value=7.2e-05 Score=56.87 Aligned_cols=88 Identities=13% Similarity=-0.056 Sum_probs=51.7
Q ss_pred eeEEEEecccccceeeeeeeccCC--CCCcc--ccCc-eeeeeeeEEEECCeEEEEEEEeCCCCccccc------cccce
Q 028595 5 AKLACLFATQVTSFLLYVLSVSGR--SSIWD--YIPT-VFDNFSANVVAEGTTVNLGLWDTAGQEDYNR------LRPLS 73 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~~--~~~~~--~~~t-~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~------~~~~~ 73 (207)
.-|+++|.+++| ||+|+|++.+. .+... ..++ .|..........+....+.+.||+|...... .....
T Consensus 8 ~vvsv~G~~~sG-KS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~~~ 86 (224)
T cd01851 8 AVVSVFGPQSSG-KSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARLFA 86 (224)
T ss_pred EEEEEECCCCCC-HHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHHHH
Confidence 357899999999 99999999988 55322 1122 2322222111123457899999999654322 11122
Q ss_pred ecC--CcEEEEEEeCCChhhHH
Q 028595 74 YRG--ADVFVLAFSLVSRASYE 93 (207)
Q Consensus 74 ~~~--~d~~i~v~d~~~~~s~~ 93 (207)
+.. ++.+|+..+....+...
T Consensus 87 l~~llss~~i~n~~~~~~~~~~ 108 (224)
T cd01851 87 LATLLSSVLIYNSWETILGDDL 108 (224)
T ss_pred HHHHHhCEEEEeccCcccHHHH
Confidence 223 67787777766544333
No 369
>PRK12289 GTPase RsgA; Reviewed
Probab=97.53 E-value=5.5e-05 Score=61.19 Aligned_cols=55 Identities=9% Similarity=-0.099 Sum_probs=33.5
Q ss_pred EEEEecccccceeeeeeeccCCCCCc-cccCce------eeeeeeEEEECCeEEEEEEEeCCCCcc
Q 028595 7 LACLFATQVTSFLLYVLSVSGRSSIW-DYIPTV------FDNFSANVVAEGTTVNLGLWDTAGQED 65 (207)
Q Consensus 7 i~iiG~~~~GgKssli~~l~~~~~~~-~~~~t~------~~~~~~~~~~~~~~~~l~i~D~~G~~~ 65 (207)
++++|.++|| ||||||+|.+..-.. ...+.. +.+....+.+++.. .|+||||-..
T Consensus 175 ~v~iG~SgVG-KSSLIN~L~~~~~~~t~~vs~~~~rGrHTT~~~~l~~l~~g~---~liDTPG~~~ 236 (352)
T PRK12289 175 TVVAGPSGVG-KSSLINRLIPDVELRVGKVSGKLGRGRHTTRHVELFELPNGG---LLADTPGFNQ 236 (352)
T ss_pred EEEEeCCCCC-HHHHHHHHcCccccccccccCCCCCCCCcCceeEEEECCCCc---EEEeCCCccc
Confidence 6999999999 999999999764221 111110 11122333343222 5899999754
No 370
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.50 E-value=0.0012 Score=46.89 Aligned_cols=146 Identities=16% Similarity=0.190 Sum_probs=83.7
Q ss_pred cceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCC-CCccccc-------------
Q 028595 3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTA-GQEDYNR------------- 68 (207)
Q Consensus 3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~-G~~~~~~------------- 68 (207)
...||.+-|.+++| |||++.++.+.- ...--+++-.+...+.-+|+.+-+.+.|+. |.+-+.+
T Consensus 4 ~~mki~ITG~PGvG-KtTl~~ki~e~L--~~~g~kvgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~ 80 (179)
T COG1618 4 MAMKIFITGRPGVG-KTTLVLKIAEKL--REKGYKVGGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYG 80 (179)
T ss_pred cceEEEEeCCCCcc-HHHHHHHHHHHH--HhcCceeeeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEE
Confidence 36799999999999 999999986332 111134555667777788888889999987 3221100
Q ss_pred ------------cccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCc
Q 028595 69 ------------LRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLV 135 (207)
Q Consensus 69 ------------~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~ 135 (207)
..+..++.||++|+ |=--+-.+. ...+...++... .+.|++.+.++.+..+-
T Consensus 81 V~v~~le~i~~~al~rA~~~aDvIII--DEIGpMElk--s~~f~~~ve~vl~~~kpliatlHrrsr~P~----------- 145 (179)
T COG1618 81 VNVEGLEEIAIPALRRALEEADVIII--DEIGPMELK--SKKFREAVEEVLKSGKPLIATLHRRSRHPL----------- 145 (179)
T ss_pred eeHHHHHHHhHHHHHHHhhcCCEEEE--ecccchhhc--cHHHHHHHHHHhcCCCcEEEEEecccCChH-----------
Confidence 11233344565543 322121111 234444444433 47888888776654211
Q ss_pred ccCHHHHHHHHHHhCCcEEEEeccCCCCCHHHHHHHHHHHHh
Q 028595 136 PVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVI 177 (207)
Q Consensus 136 ~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i~~~~~ 177 (207)
.+++ +..+. -++. .+.+|-+.++..++..+-
T Consensus 146 ------v~~i-k~~~~-v~v~---lt~~NR~~i~~~Il~~L~ 176 (179)
T COG1618 146 ------VQRI-KKLGG-VYVF---LTPENRNRILNEILSVLK 176 (179)
T ss_pred ------HHHh-hhcCC-EEEE---EccchhhHHHHHHHHHhc
Confidence 1222 33333 2222 566777788888887664
No 371
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=97.46 E-value=0.00052 Score=63.99 Aligned_cols=112 Identities=18% Similarity=0.058 Sum_probs=63.0
Q ss_pred EEEEecccccceeeeeeeccCCCCCcc------ccCceeeeeeeEEEECCeEEEEEEEeCCCCc--------cccccccc
Q 028595 7 LACLFATQVTSFLLYVLSVSGRSSIWD------YIPTVFDNFSANVVAEGTTVNLGLWDTAGQE--------DYNRLRPL 72 (207)
Q Consensus 7 i~iiG~~~~GgKssli~~l~~~~~~~~------~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~--------~~~~~~~~ 72 (207)
.++||.+++| |||+|++- +-.+.-. ....++.+..-...+.++. .++||+|.. .....|..
T Consensus 114 YlviG~~gsG-Ktt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~c~wwf~~~a---vliDtaG~y~~~~~~~~~~~~~W~~ 188 (1169)
T TIGR03348 114 YLVIGPPGSG-KTTLLQNS-GLKFPLAERLGAAALRGVGGTRNCDWWFTDEA---VLIDTAGRYTTQDSDPEEDAAAWLG 188 (1169)
T ss_pred EEEECCCCCc-hhHHHHhC-CCCCcCchhhccccccCCCCCcccceEecCCE---EEEcCCCccccCCCcccccHHHHHH
Confidence 4799999999 99999886 3333211 0111121211122223323 489999822 12223443
Q ss_pred ee---------cCCcEEEEEEeCCChh-----hHHHH---HHHHHHHHhhcC-CCCcEEEEeeCCCccc
Q 028595 73 SY---------RGADVFVLAFSLVSRA-----SYENV---LKKWIPELQHYS-PGVPVVLVGTKLDLRE 123 (207)
Q Consensus 73 ~~---------~~~d~~i~v~d~~~~~-----s~~~~---~~~~~~~i~~~~-~~~piivv~nK~D~~~ 123 (207)
++ +-.+++|+++|+.+.- ..... ....+.++.+.. -..|+.|+.||+|+..
T Consensus 189 fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll~ 257 (1169)
T TIGR03348 189 FLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLLA 257 (1169)
T ss_pred HHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhhc
Confidence 33 3479999999987532 11111 123333443332 5899999999999753
No 372
>PRK12288 GTPase RsgA; Reviewed
Probab=97.44 E-value=9.5e-05 Score=59.76 Aligned_cols=56 Identities=9% Similarity=-0.015 Sum_probs=34.3
Q ss_pred EEEEecccccceeeeeeeccCCCCCc-cccCce------eeeeeeEEEECCeEEEEEEEeCCCCccc
Q 028595 7 LACLFATQVTSFLLYVLSVSGRSSIW-DYIPTV------FDNFSANVVAEGTTVNLGLWDTAGQEDY 66 (207)
Q Consensus 7 i~iiG~~~~GgKssli~~l~~~~~~~-~~~~t~------~~~~~~~~~~~~~~~~l~i~D~~G~~~~ 66 (207)
++++|.++|| ||||||+|.+..... ...+.. +.+....+.+++.. .|+||||-..+
T Consensus 208 ~~~vG~sgVG-KSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l~~l~~~~---~liDTPGir~~ 270 (347)
T PRK12288 208 SIFVGQSGVG-KSSLINALLPEAEILVGDVSDNSGLGQHTTTAARLYHFPHGG---DLIDSPGVREF 270 (347)
T ss_pred EEEECCCCCC-HHHHHHHhccccceeeccccCcCCCCcCceeeEEEEEecCCC---EEEECCCCCcc
Confidence 6899999999 999999999775321 111110 11122233443222 48999997664
No 373
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=97.41 E-value=0.00066 Score=39.49 Aligned_cols=43 Identities=26% Similarity=0.390 Sum_probs=27.4
Q ss_pred CcEEEEEEeCCChh--hHHHHHHHHHHHHhhcCCCCcEEEEeeCCC
Q 028595 77 ADVFVLAFSLVSRA--SYENVLKKWIPELQHYSPGVPVVLVGTKLD 120 (207)
Q Consensus 77 ~d~~i~v~d~~~~~--s~~~~~~~~~~~i~~~~~~~piivv~nK~D 120 (207)
.++++|++|.+... +.++- ..++..++...++.|+++|.||+|
T Consensus 14 ~~~ilfi~D~Se~CGysie~Q-~~L~~~ik~~F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 14 ADAILFIIDPSEQCGYSIEEQ-LSLFKEIKPLFPNKPVIVVLNKID 58 (58)
T ss_dssp -SEEEEEE-TT-TTSS-HHHH-HHHHHHHHHHTTTS-EEEEE--TT
T ss_pred cceEEEEEcCCCCCCCCHHHH-HHHHHHHHHHcCCCCEEEEEeccC
Confidence 58999999999753 34443 355667776667999999999998
No 374
>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=97.38 E-value=0.0001 Score=58.19 Aligned_cols=83 Identities=16% Similarity=0.074 Sum_probs=53.9
Q ss_pred eeEEEEecccccceeeeeeeccCCCCCccccCce-eeeeeeEEEEC---------------CeEEEEEEEeCCCCc----
Q 028595 5 AKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTV-FDNFSANVVAE---------------GTTVNLGLWDTAGQE---- 64 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~-~~~~~~~~~~~---------------~~~~~l~i~D~~G~~---- 64 (207)
.|+.++|-++|| ||||.|.+++.......-|-. -+.-..++.+. -....++++|++|.-
T Consensus 21 lkiGIVGlPNvG-KST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkGAs 99 (391)
T KOG1491|consen 21 LKIGIVGLPNVG-KSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKGAS 99 (391)
T ss_pred ceeeEeeCCCCc-hHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccCcc
Confidence 489999999999 999999999887543322222 12222233331 135789999998732
Q ss_pred cccccccce---ecCCcEEEEEEeCCC
Q 028595 65 DYNRLRPLS---YRGADVFVLAFSLVS 88 (207)
Q Consensus 65 ~~~~~~~~~---~~~~d~~i~v~d~~~ 88 (207)
.-..+-+.| ++.+|+++-|.+...
T Consensus 100 ~G~GLGN~FLs~iR~vDaifhVVr~f~ 126 (391)
T KOG1491|consen 100 AGEGLGNKFLSHIRHVDAIFHVVRAFE 126 (391)
T ss_pred cCcCchHHHHHhhhhccceeEEEEecC
Confidence 333444433 567999999887553
No 375
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.35 E-value=0.00012 Score=59.64 Aligned_cols=56 Identities=13% Similarity=0.031 Sum_probs=34.6
Q ss_pred eeEEEEecccccceeeeeeeccCCCCC----ccccCceeeee-eeEEEECCeEEEEEEEeCCCCc
Q 028595 5 AKLACLFATQVTSFLLYVLSVSGRSSI----WDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQE 64 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~~~~~----~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~ 64 (207)
.++.++|.+||| ||||+|++++.... ....+..|.+. ...+.+++ .+.++||||-.
T Consensus 155 ~~v~~vG~~nvG-KStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~~~---~~~l~DtPG~~ 215 (360)
T TIGR03597 155 KDVYVVGVTNVG-KSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLDD---GHSLYDTPGII 215 (360)
T ss_pred CeEEEECCCCCC-HHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEeCC---CCEEEECCCCC
Confidence 379999999999 99999999875321 11111122222 22333322 24699999954
No 376
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=97.35 E-value=6.6e-05 Score=53.76 Aligned_cols=57 Identities=9% Similarity=-0.078 Sum_probs=32.7
Q ss_pred eEEEEecccccceeeeeeeccCCCCCc--cc-----cCceeeeeeeEEEECCeEEEEEEEeCCCCccc
Q 028595 6 KLACLFATQVTSFLLYVLSVSGRSSIW--DY-----IPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY 66 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~~~~~~--~~-----~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~ 66 (207)
-++++|.++|| ||||+|.|.+..... .. ....+.+....+.+++.. .|+||||-..+
T Consensus 37 ~~vl~G~SGvG-KSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~g~---~iIDTPGf~~~ 100 (161)
T PF03193_consen 37 TSVLLGQSGVG-KSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPDGG---YIIDTPGFRSF 100 (161)
T ss_dssp EEEEECSTTSS-HHHHHHHHHTSS----S--------------SEEEEEETTSE---EEECSHHHHT-
T ss_pred EEEEECCCCCC-HHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCCCc---EEEECCCCCcc
Confidence 47899999999 999999999874211 00 001112233344443322 58999996554
No 377
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=97.34 E-value=0.0001 Score=56.83 Aligned_cols=23 Identities=4% Similarity=-0.221 Sum_probs=20.6
Q ss_pred eEEEEecccccceeeeeeeccCCC
Q 028595 6 KLACLFATQVTSFLLYVLSVSGRS 29 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~~~ 29 (207)
.++++|.++|| ||||||++.+..
T Consensus 122 ~~~~~G~sgvG-KStLiN~L~~~~ 144 (245)
T TIGR00157 122 ISVFAGQSGVG-KSSLINALDPSV 144 (245)
T ss_pred EEEEECCCCCC-HHHHHHHHhhhh
Confidence 57899999999 999999999764
No 378
>KOG0099 consensus G protein subunit Galphas, small G protein superfamily [Signal transduction mechanisms]
Probab=97.34 E-value=0.00053 Score=52.49 Aligned_cols=70 Identities=19% Similarity=0.281 Sum_probs=50.1
Q ss_pred EEEEEEeCCCCccccccccceecCCcEEEEEEeCCChhh-------HHHHHHHHHHHHhh-----cCCCCcEEEEeeCCC
Q 028595 53 VNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRAS-------YENVLKKWIPELQH-----YSPGVPVVLVGTKLD 120 (207)
Q Consensus 53 ~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s-------~~~~~~~~~~~i~~-----~~~~~piivv~nK~D 120 (207)
+.++.+|++||...+..|-+.+.++.++|||.+.++..- -+-+ ..-++++.. +...+.+|+.+||.|
T Consensus 202 v~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL-~EaL~LFksiWnNRwL~tisvIlFLNKqD 280 (379)
T KOG0099|consen 202 VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRL-QEALNLFKSIWNNRWLRTISVILFLNKQD 280 (379)
T ss_pred cceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHH-HHHHHHHHHHHhhhHHhhhheeEEecHHH
Confidence 668999999999999999999999999999998775211 1111 122222221 114688999999999
Q ss_pred ccc
Q 028595 121 LRE 123 (207)
Q Consensus 121 ~~~ 123 (207)
+..
T Consensus 281 lla 283 (379)
T KOG0099|consen 281 LLA 283 (379)
T ss_pred HHH
Confidence 743
No 379
>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]
Probab=97.33 E-value=0.00016 Score=58.67 Aligned_cols=117 Identities=16% Similarity=0.046 Sum_probs=85.9
Q ss_pred cceeEEEEecccccceeeeeeeccCCC--C--Cc--cccCce----------eeee-eeEEEECCeEEEEEEEeCCCCcc
Q 028595 3 LLAKLACLFATQVTSFLLYVLSVSGRS--S--IW--DYIPTV----------FDNF-SANVVAEGTTVNLGLWDTAGQED 65 (207)
Q Consensus 3 ~~~ki~iiG~~~~GgKssli~~l~~~~--~--~~--~~~~t~----------~~~~-~~~~~~~~~~~~l~i~D~~G~~~ 65 (207)
+..+|.++.--.+| |||.-.|++.-. . .. +.-.|+ |.+. +..+..|=+.+.++++||||+-.
T Consensus 36 kirnigiiahidag-ktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~rinlidtpghvd 114 (753)
T KOG0464|consen 36 KIRNIGIIAHIDAG-KTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHRINLIDTPGHVD 114 (753)
T ss_pred hhhcceeEEEecCC-CchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccceEeeecCCCcce
Confidence 45688999999999 999988875221 0 00 111122 2222 33566676778999999999999
Q ss_pred ccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccC
Q 028595 66 YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED 124 (207)
Q Consensus 66 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~ 124 (207)
|+-..+.+++--|+++.|||.+-.-..+.+ ..|.+.-. -++|-..+.||.|....
T Consensus 115 f~leverclrvldgavav~dasagve~qtl-tvwrqadk---~~ip~~~finkmdk~~a 169 (753)
T KOG0464|consen 115 FRLEVERCLRVLDGAVAVFDASAGVEAQTL-TVWRQADK---FKIPAHCFINKMDKLAA 169 (753)
T ss_pred EEEEHHHHHHHhcCeEEEEeccCCccccee-eeehhccc---cCCchhhhhhhhhhhhh
Confidence 999899999999999999999987777777 67765432 27899999999997544
No 380
>PRK13796 GTPase YqeH; Provisional
Probab=97.31 E-value=0.00013 Score=59.53 Aligned_cols=56 Identities=11% Similarity=-0.072 Sum_probs=34.4
Q ss_pred eeEEEEecccccceeeeeeeccCCCCCc----cccCceeeee-eeEEEECCeEEEEEEEeCCCCc
Q 028595 5 AKLACLFATQVTSFLLYVLSVSGRSSIW----DYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQE 64 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~~~~~~----~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~ 64 (207)
.++.++|.+||| ||||+|+|....... ...+..|.+. ...+.+++. ..++||||-.
T Consensus 161 ~~v~vvG~~NvG-KSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~~---~~l~DTPGi~ 221 (365)
T PRK13796 161 RDVYVVGVTNVG-KSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDDG---SFLYDTPGII 221 (365)
T ss_pred CeEEEEcCCCCc-HHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCCC---cEEEECCCcc
Confidence 368999999999 999999998543111 0111112222 223444332 3699999964
No 381
>KOG3929 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.29 E-value=0.00014 Score=55.41 Aligned_cols=86 Identities=13% Similarity=0.086 Sum_probs=55.4
Q ss_pred EEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCe--EEEEEEEeCCCCcccccccccee--cC--CcEEEE
Q 028595 9 CLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGT--TVNLGLWDTAGQEDYNRLRPLSY--RG--ADVFVL 82 (207)
Q Consensus 9 iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~l~i~D~~G~~~~~~~~~~~~--~~--~d~~i~ 82 (207)
.||..+.||+|++|++...+. .....||...+|+.-....|. .-..++|+.+|......+...-+ .+ .-.+|+
T Consensus 47 ~I~~~Gn~~~tt~I~~~FdR~-e~~~~ptlaLEYtygRR~~g~~~kdiaN~WELGgg~~~~~LLsVPit~~~l~~~slIL 125 (363)
T KOG3929|consen 47 FIGSKGNGGKTTIILRCFDRD-EPPKPPTLALEYTYGRRAKGHNPKDIANFWELGGGTSLLDLLSVPITGDTLRTFSLIL 125 (363)
T ss_pred EEEEecCCceeEeehhhcCcc-cCCCCCceeeeeehhhhccCCCchhHHHHHHhcCCccHHHHhcCcccccchhhhhhee
Confidence 455555666999999998775 445667777777663333332 33457999999776554433222 22 347899
Q ss_pred EEeCCChhhHHHH
Q 028595 83 AFSLVSRASYENV 95 (207)
Q Consensus 83 v~d~~~~~s~~~~ 95 (207)
+.|+++++.+...
T Consensus 126 ~LDls~p~~~W~t 138 (363)
T KOG3929|consen 126 VLDLSKPNDLWPT 138 (363)
T ss_pred eeecCChHHHHHH
Confidence 9999998766433
No 382
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=97.28 E-value=0.00058 Score=57.36 Aligned_cols=70 Identities=19% Similarity=0.239 Sum_probs=46.0
Q ss_pred EEEEEeCCCC-------------ccccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCC
Q 028595 54 NLGLWDTAGQ-------------EDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKL 119 (207)
Q Consensus 54 ~l~i~D~~G~-------------~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~ 119 (207)
.+.+.|.||- +..-++...|+.+..++|+|.--.+.+.-......+.. +.. .+.--|+|++|.
T Consensus 413 RMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDGSVDAERSnVTDLVs---q~DP~GrRTIfVLTKV 489 (980)
T KOG0447|consen 413 RMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDGSVDAERSIVTDLVS---QMDPHGRRTIFVLTKV 489 (980)
T ss_pred eeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccCCcchhhhhHHHHHH---hcCCCCCeeEEEEeec
Confidence 3458899881 22345667899999999999865544444333233332 222 367789999999
Q ss_pred CcccCcc
Q 028595 120 DLREDKH 126 (207)
Q Consensus 120 D~~~~~~ 126 (207)
|+.+.+-
T Consensus 490 DlAEknl 496 (980)
T KOG0447|consen 490 DLAEKNV 496 (980)
T ss_pred chhhhcc
Confidence 9987643
No 383
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=97.25 E-value=0.00015 Score=60.16 Aligned_cols=55 Identities=13% Similarity=0.048 Sum_probs=40.3
Q ss_pred eeEEEEecccccceeeeeeeccCCCCCccccCceeeeeee-EEEECCeEEEEEEEeCCCCc
Q 028595 5 AKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSA-NVVAEGTTVNLGLWDTAGQE 64 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~l~i~D~~G~~ 64 (207)
..|.+||-+||| |||+||.|.+.+-. +...|.|.+... ++.+.. .+.|.|+||.-
T Consensus 315 vtVG~VGYPNVG-KSSTINaLvG~KkV-sVS~TPGkTKHFQTi~ls~---~v~LCDCPGLV 370 (562)
T KOG1424|consen 315 VTVGFVGYPNVG-KSSTINALVGRKKV-SVSSTPGKTKHFQTIFLSP---SVCLCDCPGLV 370 (562)
T ss_pred eEEEeecCCCCc-hhHHHHHHhcCcee-eeecCCCCcceeEEEEcCC---CceecCCCCcc
Confidence 578999999999 99999999999854 334566655433 344433 46899999953
No 384
>KOG0085 consensus G protein subunit Galphaq/Galphay, small G protein superfamily [Signal transduction mechanisms]
Probab=97.22 E-value=0.0002 Score=53.78 Aligned_cols=128 Identities=17% Similarity=0.250 Sum_probs=82.6
Q ss_pred eEEEEEEEeCCCCccccccccceecCCcEEEEEEeCCChhh----------HHHHHHHHHHHHhhcC--CCCcEEEEeeC
Q 028595 51 TTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRAS----------YENVLKKWIPELQHYS--PGVPVVLVGTK 118 (207)
Q Consensus 51 ~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s----------~~~~~~~~~~~i~~~~--~~~piivv~nK 118 (207)
.++.+.+.|++||...+..|-+++.++-.++++..++..+. .++- ..+...|-.+. .+.++++++||
T Consensus 197 ~~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeES-kALFrTIi~yPWF~nssVIlFLNK 275 (359)
T KOG0085|consen 197 QKIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEES-KALFRTIITYPWFQNSSVILFLNK 275 (359)
T ss_pred hhheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHH-HHHHHHHhccccccCCceEEEech
Confidence 45778899999999999999999999988888877664322 2222 23333333332 47899999999
Q ss_pred CCcccCccc-------ccCCCCCcccCHHHHHHHHHH----hCC-----cEEEEeccCCCCCHHHHHHHHHHHHhCCC
Q 028595 119 LDLREDKHY-------LADHPGLVPVTTAQGEELRKQ----IGA-----SYYIECSSKTQQNVKAVFDAAIKVVIKPP 180 (207)
Q Consensus 119 ~D~~~~~~~-------~~~~~~~~~v~~~~~~~~~~~----~~~-----~~~~e~Sa~~~~~i~~~f~~i~~~~~~~~ 180 (207)
.|+.++... +.+-.++.. +.+.+++|.-+ ++. ..-..++|.+.+||.-+|..+-..+++..
T Consensus 276 kDlLEekI~ySHl~~YFPe~~GP~q-Da~AAreFILkm~~d~nPd~dKii~SHfTcATDT~NIRfVFaaVkDtiLq~~ 352 (359)
T KOG0085|consen 276 KDLLEEKILYSHLADYFPEFDGPKQ-DAQAAREFILKMYVDMNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQLN 352 (359)
T ss_pred hhhhhhhhhHHHHHHhCcccCCCcc-cHHHHHHHHHHHHHhhCCCccceeeeeeeecccchhHHHHHHHHHHHHHHhh
Confidence 998765431 112222222 33344444332 221 12235788888999999999988887653
No 385
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=97.16 E-value=0.0011 Score=56.10 Aligned_cols=111 Identities=17% Similarity=0.068 Sum_probs=70.7
Q ss_pred eeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEEE
Q 028595 5 AKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 84 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 84 (207)
+=++++|.++.| |||||+++...- . ..|+....-....+.|+.-.+.+..+|. ...+++. ..+-||.++++.
T Consensus 70 fIvavvGPpGtG-KsTLirSlVrr~-t---k~ti~~i~GPiTvvsgK~RRiTflEcp~--Dl~~miD-vaKIaDLVlLlI 141 (1077)
T COG5192 70 FIVAVVGPPGTG-KSTLIRSLVRRF-T---KQTIDEIRGPITVVSGKTRRITFLECPS--DLHQMID-VAKIADLVLLLI 141 (1077)
T ss_pred eEEEeecCCCCC-hhHHHHHHHHHH-H---HhhhhccCCceEEeecceeEEEEEeChH--HHHHHHh-HHHhhheeEEEe
Confidence 346799999999 999999986442 1 1122111122334567788889999983 3333332 345689999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcc
Q 028595 85 SLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKH 126 (207)
Q Consensus 85 d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~ 126 (207)
|.+=.-..+. -.+++.+... .-+-++-|++..|+.....
T Consensus 142 dgnfGfEMET--mEFLnil~~H-GmPrvlgV~ThlDlfk~~s 180 (1077)
T COG5192 142 DGNFGFEMET--MEFLNILISH-GMPRVLGVVTHLDLFKNPS 180 (1077)
T ss_pred ccccCceehH--HHHHHHHhhc-CCCceEEEEeecccccChH
Confidence 9765433333 3566666543 1344678899999977654
No 386
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=97.11 E-value=0.0014 Score=47.64 Aligned_cols=45 Identities=18% Similarity=0.128 Sum_probs=29.8
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccC
Q 028595 78 DVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED 124 (207)
Q Consensus 78 d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~ 124 (207)
|++++|.|+.++.+..+ ..+.+.+.-...+.|+++|.||+|+.+.
T Consensus 1 DvVl~VvDar~p~~~~~--~~i~~~~~l~~~~kp~IlVlNK~DL~~~ 45 (172)
T cd04178 1 DVILEVLDARDPLGCRC--PQVEEAVLQAGGNKKLVLVLNKIDLVPK 45 (172)
T ss_pred CEEEEEEECCCCCCCCC--HHHHHHHHhccCCCCEEEEEehhhcCCH
Confidence 78999999988644432 2333332111136899999999999643
No 387
>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]
Probab=97.10 E-value=0.0018 Score=51.53 Aligned_cols=164 Identities=15% Similarity=0.112 Sum_probs=89.6
Q ss_pred eeEEEEecccccceeeeeeeccC----C---CC---Cc-cccCce---eeeeee-EEEECCeEEEEEEEeCCCCccccc-
Q 028595 5 AKLACLFATQVTSFLLYVLSVSG----R---SS---IW-DYIPTV---FDNFSA-NVVAEGTTVNLGLWDTAGQEDYNR- 68 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~----~---~~---~~-~~~~t~---~~~~~~-~~~~~~~~~~l~i~D~~G~~~~~~- 68 (207)
.+|.-||--..| ||||-..++. . ++ .+ +..|.. |.+... -+...-..-..-=.|+||+.+|-.
T Consensus 55 vNVGTIGHVDHG-KTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGHADYIKN 133 (449)
T KOG0460|consen 55 VNVGTIGHVDHG-KTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGHADYIKN 133 (449)
T ss_pred ccccccccccCC-chhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCchHHHHHH
Confidence 467888999999 9999877651 1 11 10 011110 111100 011111111223579999988743
Q ss_pred cccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHH
Q 028595 69 LRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ 148 (207)
Q Consensus 69 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 148 (207)
+... ....|+.|+|.+.+|..--+.- +.+-+.++. -=..+++..||.|+.++.+.+. .-.-+++++..+
T Consensus 134 MItG-aaqMDGaILVVaatDG~MPQTr--EHlLLArQV-GV~~ivvfiNKvD~V~d~e~le-------LVEmE~RElLse 202 (449)
T KOG0460|consen 134 MITG-AAQMDGAILVVAATDGPMPQTR--EHLLLARQV-GVKHIVVFINKVDLVDDPEMLE-------LVEMEIRELLSE 202 (449)
T ss_pred hhcC-ccccCceEEEEEcCCCCCcchH--HHHHHHHHc-CCceEEEEEecccccCCHHHHH-------HHHHHHHHHHHH
Confidence 3322 3346999999999996544443 222222221 1245789999999986655311 123468888888
Q ss_pred hCC----cEEEEec---cCCCC-------CHHHHHHHHHHHHhCCC
Q 028595 149 IGA----SYYIECS---SKTQQ-------NVKAVFDAAIKVVIKPP 180 (207)
Q Consensus 149 ~~~----~~~~e~S---a~~~~-------~i~~~f~~i~~~~~~~~ 180 (207)
+|+ .|.+.=| |+.|. .|.++++.+-..+..+.
T Consensus 203 ~gf~Gd~~PvI~GSAL~ALeg~~peig~~aI~kLldavDsyip~P~ 248 (449)
T KOG0460|consen 203 FGFDGDNTPVIRGSALCALEGRQPEIGLEAIEKLLDAVDSYIPTPE 248 (449)
T ss_pred cCCCCCCCCeeecchhhhhcCCCccccHHHHHHHHHHHhccCCCcc
Confidence 875 3667644 44552 25555555555555443
No 388
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.04 E-value=0.0014 Score=50.68 Aligned_cols=59 Identities=12% Similarity=0.043 Sum_probs=42.1
Q ss_pred cceeEEEEecccccceeeeeeeccCCCCCccccC----ceeeee-eeEEEECCeEEEEEEEeCCC
Q 028595 3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIP----TVFDNF-SANVVAEGTTVNLGLWDTAG 62 (207)
Q Consensus 3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~----t~~~~~-~~~~~~~~~~~~l~i~D~~G 62 (207)
+.++|+++|..+.| ||||+..|.+.++.....+ ++.... +..+.-.+....+.|.||.|
T Consensus 41 F~FNilCvGETg~G-KsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvG 104 (406)
T KOG3859|consen 41 FCFNILCVGETGLG-KSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVG 104 (406)
T ss_pred ceEEEEEeccCCcc-HHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecc
Confidence 46899999999999 9999999999987654332 222111 22233345678889999988
No 389
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.03 E-value=0.00026 Score=55.87 Aligned_cols=58 Identities=12% Similarity=-0.043 Sum_probs=35.0
Q ss_pred eeEEEEecccccceeeeeeeccCCCCCcc-ccCc---ee---eeeeeEEEECCeEEEEEEEeCCCCccc
Q 028595 5 AKLACLFATQVTSFLLYVLSVSGRSSIWD-YIPT---VF---DNFSANVVAEGTTVNLGLWDTAGQEDY 66 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~~~~~~~-~~~t---~~---~~~~~~~~~~~~~~~l~i~D~~G~~~~ 66 (207)
..++++|.+++| ||||+|.+.+...... ..+. -| ......+.+++. ..++||||...+
T Consensus 162 k~~~~~G~sg~G-KSTlin~l~~~~~~~~g~v~~~~~~g~~tT~~~~~~~~~~~---~~liDtPG~~~~ 226 (287)
T cd01854 162 KTSVLVGQSGVG-KSTLINALLPDLDLATGEISEKLGRGRHTTTHRELFPLPGG---GLLIDTPGFREF 226 (287)
T ss_pred ceEEEECCCCCC-HHHHHHHHhchhhccccceeccCCCCCcccceEEEEEcCCC---CEEEECCCCCcc
Confidence 358999999999 9999999987653221 1110 01 111223333321 258999998664
No 390
>PRK00098 GTPase RsgA; Reviewed
Probab=96.97 E-value=0.0005 Score=54.58 Aligned_cols=23 Identities=4% Similarity=-0.230 Sum_probs=20.4
Q ss_pred eEEEEecccccceeeeeeeccCCC
Q 028595 6 KLACLFATQVTSFLLYVLSVSGRS 29 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~~~ 29 (207)
-++++|.+++| ||||+|.+.+..
T Consensus 166 ~~~~~G~sgvG-KStlin~l~~~~ 188 (298)
T PRK00098 166 VTVLAGQSGVG-KSTLLNALAPDL 188 (298)
T ss_pred eEEEECCCCCC-HHHHHHHHhCCc
Confidence 47899999999 999999998764
No 391
>PRK13695 putative NTPase; Provisional
Probab=96.94 E-value=0.0075 Score=43.83 Aligned_cols=21 Identities=19% Similarity=0.091 Sum_probs=18.8
Q ss_pred eEEEEecccccceeeeeeeccC
Q 028595 6 KLACLFATQVTSFLLYVLSVSG 27 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~ 27 (207)
||++.|.+++| ||||+..+.+
T Consensus 2 ~i~ltG~~G~G-KTTll~~i~~ 22 (174)
T PRK13695 2 KIGITGPPGVG-KTTLVLKIAE 22 (174)
T ss_pred EEEEECCCCCC-HHHHHHHHHH
Confidence 78999999999 9999998653
No 392
>COG1162 Predicted GTPases [General function prediction only]
Probab=96.90 E-value=0.00066 Score=53.24 Aligned_cols=56 Identities=11% Similarity=-0.092 Sum_probs=33.7
Q ss_pred EEEEecccccceeeeeeeccCCCCCc------cc-cCceeeeeeeEEEECCeEEEEEEEeCCCCccc
Q 028595 7 LACLFATQVTSFLLYVLSVSGRSSIW------DY-IPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY 66 (207)
Q Consensus 7 i~iiG~~~~GgKssli~~l~~~~~~~------~~-~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~ 66 (207)
.+++|.++|| ||||+|+|....... .. .--.+.+...-+.+++.. .|.||||-..+
T Consensus 167 svl~GqSGVG-KSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG---~iiDTPGf~~~ 229 (301)
T COG1162 167 TVLLGQSGVG-KSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGG---WIIDTPGFRSL 229 (301)
T ss_pred EEEECCCCCc-HHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCC---EEEeCCCCCcc
Confidence 5788999999 999999998643111 11 111122334444553222 58999997654
No 393
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=96.90 E-value=0.0056 Score=44.66 Aligned_cols=85 Identities=20% Similarity=0.271 Sum_probs=59.3
Q ss_pred eEEEEEEEeCCCCccccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccC
Q 028595 51 TTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLAD 130 (207)
Q Consensus 51 ~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~ 130 (207)
..+.+.++|+|+.... .....+..+|.++++...+. .+...+ ..+++.+.+. +.|+.+|.|+.|....
T Consensus 91 ~~~d~viiDtpp~~~~--~~~~~l~~aD~vliv~~~~~-~~~~~~-~~~~~~l~~~--~~~~~vV~N~~~~~~~------ 158 (179)
T cd03110 91 EGAELIIIDGPPGIGC--PVIASLTGADAALLVTEPTP-SGLHDL-ERAVELVRHF--GIPVGVVINKYDLNDE------ 158 (179)
T ss_pred cCCCEEEEECcCCCcH--HHHHHHHcCCEEEEEecCCc-ccHHHH-HHHHHHHHHc--CCCEEEEEeCCCCCcc------
Confidence 4678899999875432 23345678999999998774 455555 5666666554 5778999999986432
Q ss_pred CCCCcccCHHHHHHHHHHhCCcEEE
Q 028595 131 HPGLVPVTTAQGEELRKQIGASYYI 155 (207)
Q Consensus 131 ~~~~~~v~~~~~~~~~~~~~~~~~~ 155 (207)
...+++++++.+|. +++
T Consensus 159 -------~~~~~~~~~~~~~~-~vl 175 (179)
T cd03110 159 -------IAEEIEDYCEEEGI-PIL 175 (179)
T ss_pred -------hHHHHHHHHHHcCC-CeE
Confidence 34567788888887 543
No 394
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.77 E-value=0.0032 Score=50.44 Aligned_cols=95 Identities=11% Similarity=0.068 Sum_probs=55.0
Q ss_pred EEEEEEEeCCCCcccccc--------cc----ceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCC
Q 028595 52 TVNLGLWDTAGQEDYNRL--------RP----LSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKL 119 (207)
Q Consensus 52 ~~~l~i~D~~G~~~~~~~--------~~----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~ 119 (207)
.+.+.|+||||....... .. ..-...+..++|.|++... +.+ .+ ...+.+. -.+--+|.||.
T Consensus 196 ~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~--~~~-~~-a~~f~~~--~~~~giIlTKl 269 (318)
T PRK10416 196 GIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQ--NAL-SQ-AKAFHEA--VGLTGIILTKL 269 (318)
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCCh--HHH-HH-HHHHHhh--CCCCEEEEECC
Confidence 467899999996542211 10 1112367788999988532 222 11 1122111 13447899999
Q ss_pred CcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCCCCCHHHHH
Q 028595 120 DLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 169 (207)
Q Consensus 120 D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f 169 (207)
|... .-..+..++...+. |+..++ +|++++++-
T Consensus 270 D~t~--------------~~G~~l~~~~~~~~-Pi~~v~--~Gq~~~Dl~ 302 (318)
T PRK10416 270 DGTA--------------KGGVVFAIADELGI-PIKFIG--VGEGIDDLQ 302 (318)
T ss_pred CCCC--------------CccHHHHHHHHHCC-CEEEEe--CCCChhhCc
Confidence 9532 23445666677787 777776 777776653
No 395
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=96.68 E-value=0.0045 Score=45.46 Aligned_cols=81 Identities=15% Similarity=0.010 Sum_probs=53.8
Q ss_pred cEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhC-CcEEEE
Q 028595 78 DVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG-ASYYIE 156 (207)
Q Consensus 78 d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~e 156 (207)
+.-|+|.|++..+..-. +-.+.+ ...=++|.||.|+.+.-.. +.+...+-+++.+ -.++++
T Consensus 119 ~~~v~VidvteGe~~P~---K~gP~i-----~~aDllVInK~DLa~~v~~----------dlevm~~da~~~np~~~ii~ 180 (202)
T COG0378 119 HLRVVVIDVTEGEDIPR---KGGPGI-----FKADLLVINKTDLAPYVGA----------DLEVMARDAKEVNPEAPIIF 180 (202)
T ss_pred ceEEEEEECCCCCCCcc---cCCCce-----eEeeEEEEehHHhHHHhCc----------cHHHHHHHHHHhCCCCCEEE
Confidence 47788888876443211 000000 0122789999999876553 5566666666553 358999
Q ss_pred eccCCCCCHHHHHHHHHHHH
Q 028595 157 CSSKTQQNVKAVFDAAIKVV 176 (207)
Q Consensus 157 ~Sa~~~~~i~~~f~~i~~~~ 176 (207)
+|+++|+|+++++.++....
T Consensus 181 ~n~ktg~G~~~~~~~i~~~~ 200 (202)
T COG0378 181 TNLKTGEGLDEWLRFIEPQA 200 (202)
T ss_pred EeCCCCcCHHHHHHHHHhhc
Confidence 99999999999999987654
No 396
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=96.67 E-value=0.0019 Score=46.28 Aligned_cols=65 Identities=11% Similarity=-0.004 Sum_probs=36.8
Q ss_pred EEEEEEEeCCCCccccccccc--------eecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCc
Q 028595 52 TVNLGLWDTAGQEDYNRLRPL--------SYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 121 (207)
Q Consensus 52 ~~~l~i~D~~G~~~~~~~~~~--------~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~ 121 (207)
.....+.|++|-......... ..-..|.++++.|..+-.........+..++.. . =+++.||+|+
T Consensus 86 ~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~----a-d~ivlnk~dl 158 (158)
T cd03112 86 AFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAF----A-DRILLNKTDL 158 (158)
T ss_pred CCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHH----C-CEEEEecccC
Confidence 356678999996533222211 223478999999976543322111333444432 1 2568899995
No 397
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.65 E-value=0.0018 Score=50.71 Aligned_cols=95 Identities=12% Similarity=0.046 Sum_probs=55.9
Q ss_pred EEEEEEEeCCCCccccccc-----------c-ceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCC
Q 028595 52 TVNLGLWDTAGQEDYNRLR-----------P-LSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKL 119 (207)
Q Consensus 52 ~~~l~i~D~~G~~~~~~~~-----------~-~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~ 119 (207)
.+.+.|+||+|....+... . ..-...|..++|.|.+.. .+.+ .. ...+.+. -.+--+|.||.
T Consensus 154 ~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~--~~~~-~~-~~~f~~~--~~~~g~IlTKl 227 (272)
T TIGR00064 154 NIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTG--QNAL-EQ-AKVFNEA--VGLTGIILTKL 227 (272)
T ss_pred CCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCC--HHHH-HH-HHHHHhh--CCCCEEEEEcc
Confidence 4788999999965432211 0 111237899999999753 2222 11 1222221 12457899999
Q ss_pred CcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCCCCCHHHHH
Q 028595 120 DLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVF 169 (207)
Q Consensus 120 D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f 169 (207)
|.... ...+..+....+. |...++ +|++++++-
T Consensus 228 De~~~--------------~G~~l~~~~~~~~-Pi~~~~--~Gq~~~dl~ 260 (272)
T TIGR00064 228 DGTAK--------------GGIILSIAYELKL-PIKFIG--VGEKIDDLA 260 (272)
T ss_pred CCCCC--------------ccHHHHHHHHHCc-CEEEEe--CCCChHhCc
Confidence 97433 3345556667777 766666 777776653
No 398
>PRK14974 cell division protein FtsY; Provisional
Probab=96.54 E-value=0.0012 Score=53.10 Aligned_cols=95 Identities=14% Similarity=0.084 Sum_probs=55.3
Q ss_pred EEEEEEeCCCCccccc-cc---cce--ecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcc
Q 028595 53 VNLGLWDTAGQEDYNR-LR---PLS--YRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKH 126 (207)
Q Consensus 53 ~~l~i~D~~G~~~~~~-~~---~~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~ 126 (207)
+.+.|+||+|...... +. ... ..+.|.+++|.|.+...........+... -.+--+|.||.|....-
T Consensus 223 ~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f~~~------~~~~giIlTKlD~~~~~- 295 (336)
T PRK14974 223 IDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFNEA------VGIDGVILTKVDADAKG- 295 (336)
T ss_pred CCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHHHHhc------CCCCEEEEeeecCCCCc-
Confidence 5689999999654221 11 111 12468899999987644322221222221 12346889999975432
Q ss_pred cccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCCCCCHHHHHH
Q 028595 127 YLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFD 170 (207)
Q Consensus 127 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~ 170 (207)
..+-..+...+. |+..++ +|++++++..
T Consensus 296 -------------G~~ls~~~~~~~-Pi~~i~--~Gq~v~Dl~~ 323 (336)
T PRK14974 296 -------------GAALSIAYVIGK-PILFLG--VGQGYDDLIP 323 (336)
T ss_pred -------------cHHHHHHHHHCc-CEEEEe--CCCChhhccc
Confidence 334555556676 666666 7888877643
No 399
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.54 E-value=0.0022 Score=53.22 Aligned_cols=65 Identities=14% Similarity=0.040 Sum_probs=37.4
Q ss_pred EEEEEEEeCCCCcccccc-cc---c--eecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcc
Q 028595 52 TVNLGLWDTAGQEDYNRL-RP---L--SYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLR 122 (207)
Q Consensus 52 ~~~l~i~D~~G~~~~~~~-~~---~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~ 122 (207)
.+.+.|+||+|....+.. .. . ...+.+-+++|.|.+-.....+. ...+.+. -.+--+|.||.|..
T Consensus 182 ~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~----a~~F~~~--~~~~g~IlTKlD~~ 252 (429)
T TIGR01425 182 NFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQ----AKAFKDS--VDVGSVIITKLDGH 252 (429)
T ss_pred CCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHH----HHHHHhc--cCCcEEEEECccCC
Confidence 478899999995543211 11 1 12246889999998765333322 2222221 23456788888864
No 400
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=96.47 E-value=0.0073 Score=42.26 Aligned_cols=65 Identities=12% Similarity=0.011 Sum_probs=44.8
Q ss_pred EEEEEEeCCCCccccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCc
Q 028595 53 VNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 121 (207)
Q Consensus 53 ~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~ 121 (207)
+.+.++|+|+... ......+..+|.++++.+.+ ..++..+ ...++.+.+.....++.++.|+.+.
T Consensus 45 yd~VIiD~p~~~~--~~~~~~l~~aD~vviv~~~~-~~s~~~~-~~~l~~l~~~~~~~~~~lVvN~~~~ 109 (139)
T cd02038 45 YDYIIIDTGAGIS--DNVLDFFLAADEVIVVTTPE-PTSITDA-YALIKKLAKQLRVLNFRVVVNRAES 109 (139)
T ss_pred CCEEEEECCCCCC--HHHHHHHHhCCeEEEEcCCC-hhHHHHH-HHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 7789999987532 23356788899999999975 4455544 3445555443345678899999974
No 401
>COG1161 Predicted GTPases [General function prediction only]
Probab=96.16 E-value=0.0062 Score=48.88 Aligned_cols=94 Identities=24% Similarity=0.173 Sum_probs=60.0
Q ss_pred eCCCC-ccccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCccc
Q 028595 59 DTAGQ-EDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPV 137 (207)
Q Consensus 59 D~~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v 137 (207)
+.+|+ ..+.......+..+|+++-|.|+.++.+...- .+.+...+.|.++|+||+|+.+...
T Consensus 16 ~~~g~~~k~~~~~~~~~~~~d~vvevvDar~P~~s~~~------~l~~~v~~k~~i~vlNK~DL~~~~~----------- 78 (322)
T COG1161 16 WFPGHMKKAKRQLKEVLKSVDVVVEVVDARDPLGTRNP------ELERIVKEKPKLLVLNKADLAPKEV----------- 78 (322)
T ss_pred CCCCchHHHHHHHHHhcccCCEEEEEEeccccccccCc------cHHHHHccCCcEEEEehhhcCCHHH-----------
Confidence 33554 34555667778889999999999999877664 2233333566799999999975531
Q ss_pred CHHHHHHHHHHh-CCcEEEEeccCCCCCHHHHHHH
Q 028595 138 TTAQGEELRKQI-GASYYIECSSKTQQNVKAVFDA 171 (207)
Q Consensus 138 ~~~~~~~~~~~~-~~~~~~e~Sa~~~~~i~~~f~~ 171 (207)
.++..++.... +. ..+.+++..+.+...+...
T Consensus 79 -~~~W~~~~~~~~~~-~~~~v~~~~~~~~~~i~~~ 111 (322)
T COG1161 79 -TKKWKKYFKKEEGI-KPIFVSAKSRQGGKKIRKA 111 (322)
T ss_pred -HHHHHHHHHhcCCC-ccEEEEeecccCccchHHH
Confidence 22222222222 33 4567777777666666543
No 402
>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]
Probab=96.06 E-value=0.0081 Score=50.29 Aligned_cols=70 Identities=20% Similarity=0.243 Sum_probs=55.4
Q ss_pred CCeEEEEEEEeCCCCccccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcc
Q 028595 49 EGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLR 122 (207)
Q Consensus 49 ~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~ 122 (207)
++..+-++++|.||+-.|.+.....++-.|+.+.|.|.-+.-+.+.- ..+.+.+.+ .+.-+++.||.|..
T Consensus 94 d~~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVVDcv~GvCVQTE-TVLrQA~~E---RIkPvlv~NK~DRA 163 (842)
T KOG0469|consen 94 DGNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSGVCVQTE-TVLRQAIAE---RIKPVLVMNKMDRA 163 (842)
T ss_pred CCcceeEEeccCCCcccchhhhhheeEeccCcEEEEEccCceEechH-HHHHHHHHh---hccceEEeehhhHH
Confidence 45678999999999999999999999999999999999887776654 445555543 34456788999953
No 403
>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]
Probab=95.96 E-value=0.016 Score=48.58 Aligned_cols=80 Identities=15% Similarity=0.106 Sum_probs=55.2
Q ss_pred ccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHH
Q 028595 66 YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEEL 145 (207)
Q Consensus 66 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~ 145 (207)
++++|+ .+..+|+++.+.|+.|+--|... .+...+....+....+++.||.||.+.. ......+|
T Consensus 165 WRQLWR-VlErSDivvqIVDARnPllfr~~--dLe~Yvke~d~~K~~~LLvNKaDLl~~~------------qr~aWa~Y 229 (562)
T KOG1424|consen 165 WRQLWR-VLERSDIVVQIVDARNPLLFRSP--DLEDYVKEVDPSKANVLLVNKADLLPPE------------QRVAWAEY 229 (562)
T ss_pred HHHHHH-HHhhcceEEEEeecCCccccCCh--hHHHHHhccccccceEEEEehhhcCCHH------------HHHHHHHH
Confidence 344444 35678999999999998766553 3333444333457789999999997655 33445556
Q ss_pred HHHhCCcEEEEeccCC
Q 028595 146 RKQIGASYYIECSSKT 161 (207)
Q Consensus 146 ~~~~~~~~~~e~Sa~~ 161 (207)
.+..++ +++..||..
T Consensus 230 F~~~ni-~~vf~SA~~ 244 (562)
T KOG1424|consen 230 FRQNNI-PVVFFSALA 244 (562)
T ss_pred HHhcCc-eEEEEeccc
Confidence 666676 888888876
No 404
>KOG2484 consensus GTPase [General function prediction only]
Probab=95.92 E-value=0.0023 Score=51.77 Aligned_cols=54 Identities=15% Similarity=-0.014 Sum_probs=37.2
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeee-EEEECCeEEEEEEEeCCC
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSA-NVVAEGTTVNLGLWDTAG 62 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~l~i~D~~G 62 (207)
.+.+.|+|-++|| |||+||+|...+.... -++.|.+-+. .+.++ -.+.|.|.||
T Consensus 252 sIrvGViG~PNVG-KSSvINsL~~~k~C~v-g~~pGvT~smqeV~Ld---k~i~llDsPg 306 (435)
T KOG2484|consen 252 SIRVGIIGYPNVG-KSSVINSLKRRKACNV-GNVPGVTRSMQEVKLD---KKIRLLDSPG 306 (435)
T ss_pred ceEeeeecCCCCC-hhHHHHHHHHhccccC-CCCccchhhhhheecc---CCceeccCCc
Confidence 4679999999999 9999999998875322 2233333322 33333 2468999998
No 405
>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]
Probab=95.61 E-value=0.0073 Score=47.49 Aligned_cols=59 Identities=14% Similarity=0.039 Sum_probs=0.0
Q ss_pred ccceeEEEEecccccceeeeeeecc------CCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCC
Q 028595 2 ELLAKLACLFATQVTSFLLYVLSVS------GRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAG 62 (207)
Q Consensus 2 ~~~~ki~iiG~~~~GgKssli~~l~------~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G 62 (207)
+....+.++|-|++| ||+|||.+. .+.......|.++......+.+.+... +.+.||||
T Consensus 141 ~~~~~vmVvGvPNVG-KSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp~-vy~iDTPG 205 (335)
T KOG2485|consen 141 NSEYNVMVVGVPNVG-KSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRPP-VYLIDTPG 205 (335)
T ss_pred CCceeEEEEcCCCCC-hHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCCc-eEEecCCC
No 406
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=95.61 E-value=0.0019 Score=46.40 Aligned_cols=22 Identities=5% Similarity=0.022 Sum_probs=17.5
Q ss_pred eEEEEecccccceeeeeeeccCC
Q 028595 6 KLACLFATQVTSFLLYVLSVSGR 28 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~~ 28 (207)
||+|.|++++| ||||++.|...
T Consensus 1 rI~i~G~~stG-KTTL~~~L~~~ 22 (163)
T PF13521_consen 1 RIVITGGPSTG-KTTLIEALAAR 22 (163)
T ss_dssp -EEEE--TTSH-HHHHHHHHHHH
T ss_pred CEEEECCCCCC-HHHHHHHHHHc
Confidence 79999999999 99999999755
No 407
>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]
Probab=95.44 E-value=0.12 Score=42.34 Aligned_cols=161 Identities=12% Similarity=0.015 Sum_probs=89.1
Q ss_pred ceeEEEEecccccceeeeeeeccCCC------CCcc-----------------ccCceeeeee--eEEEE-----CCeEE
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRS------SIWD-----------------YIPTVFDNFS--ANVVA-----EGTTV 53 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~------~~~~-----------------~~~t~~~~~~--~~~~~-----~~~~~ 53 (207)
..+++++|--.+| |||+-..+.... .... +..|..++-. +.+.+ .-..-
T Consensus 79 hvn~vfighVdag-kstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte~~ 157 (501)
T KOG0459|consen 79 HVNAVFIGHVDAG-KSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETENK 157 (501)
T ss_pred CceEEEEEEEecc-ccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEecce
Confidence 4689999999999 999888765221 0000 1111111111 11111 11234
Q ss_pred EEEEEeCCCCccccccccceecCCcEEEEEEeCCChhhHHHHH-----HHHHHHHhhcCCCCcEEEEeeCCCcccCcccc
Q 028595 54 NLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVL-----KKWIPELQHYSPGVPVVLVGTKLDLREDKHYL 128 (207)
Q Consensus 54 ~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~-----~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~ 128 (207)
.+.+.|.||+..|-..--.-...||..++|.++.-.+--.... .. ..++.+-..-...|++.||.|-+..+=.
T Consensus 158 ~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTRE-ha~Lakt~gv~~lVv~vNKMddPtvnWs- 235 (501)
T KOG0459|consen 158 RFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTRE-HAMLAKTAGVKHLIVLINKMDDPTVNWS- 235 (501)
T ss_pred eEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhcccccccchhH-HHHHHHhhccceEEEEEEeccCCccCcc-
Confidence 6789999999888654444455689999998874321110000 00 0112111134678999999997643210
Q ss_pred cCCCCCcccCHHHHHHHHHHhCC-----cEEEEeccCCCCCHHHHHH
Q 028595 129 ADHPGLVPVTTAQGEELRKQIGA-----SYYIECSSKTQQNVKAVFD 170 (207)
Q Consensus 129 ~~~~~~~~v~~~~~~~~~~~~~~-----~~~~e~Sa~~~~~i~~~f~ 170 (207)
.+-.....+....+.+.+|+ ..|+++|..+|.++.+.-.
T Consensus 236 ---~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~~ 279 (501)
T KOG0459|consen 236 ---NERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRTD 279 (501)
T ss_pred ---hhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhccc
Confidence 00000133456667776664 2588999999999887653
No 408
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.32 E-value=0.051 Score=50.51 Aligned_cols=111 Identities=18% Similarity=0.027 Sum_probs=58.5
Q ss_pred EEEEecccccceeeeeeeccCCCCC--cccc----CceeeeeeeEEEECCeEEEEEEEeCCCCcc--------ccccccc
Q 028595 7 LACLFATQVTSFLLYVLSVSGRSSI--WDYI----PTVFDNFSANVVAEGTTVNLGLWDTAGQED--------YNRLRPL 72 (207)
Q Consensus 7 i~iiG~~~~GgKssli~~l~~~~~~--~~~~----~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~--------~~~~~~~ 72 (207)
.++||.+++| |||++..- +.+|. .... ...+..+.. -.+.+ .-.++||+|... -...|..
T Consensus 128 y~viG~pgsG-KTtal~~s-gl~Fpl~~~~~~~~~~~~gT~~cd-wwf~d---eaVlIDtaGry~~q~s~~~~~~~~W~~ 201 (1188)
T COG3523 128 YMVIGPPGSG-KTTALLNS-GLQFPLAEQMGALGLAGPGTRNCD-WWFTD---EAVLIDTAGRYITQDSADEVDRAEWLG 201 (1188)
T ss_pred eEEecCCCCC-cchHHhcc-cccCcchhhhccccccCCCCcccC-ccccc---ceEEEcCCcceecccCcchhhHHHHHH
Confidence 4799999999 99998653 22221 1111 111111111 11122 235789888321 1222332
Q ss_pred e---------ecCCcEEEEEEeCCChhhHH-----HHHHHH---HHHHhh-cCCCCcEEEEeeCCCccc
Q 028595 73 S---------YRGADVFVLAFSLVSRASYE-----NVLKKW---IPELQH-YSPGVPVVLVGTKLDLRE 123 (207)
Q Consensus 73 ~---------~~~~d~~i~v~d~~~~~s~~-----~~~~~~---~~~i~~-~~~~~piivv~nK~D~~~ 123 (207)
+ .+--+++|+..|+.+.-+.. .....+ +.++.. ..-..|+++++||.|+.+
T Consensus 202 fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~ 270 (1188)
T COG3523 202 FLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLP 270 (1188)
T ss_pred HHHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEecccccc
Confidence 2 34478999999987531111 111222 233322 224799999999999864
No 409
>KOG2484 consensus GTPase [General function prediction only]
Probab=95.27 E-value=0.014 Score=47.38 Aligned_cols=56 Identities=13% Similarity=0.040 Sum_probs=38.5
Q ss_pred ccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCc
Q 028595 68 RLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK 125 (207)
Q Consensus 68 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~ 125 (207)
......+..+|++|-|.|+.||.+-..- ..-..+.....+...|+|+||+|+.+..
T Consensus 138 ke~rkvve~sDVVleVlDARDPlgtR~~--~vE~~V~~~~gnKkLILVLNK~DLVPrE 193 (435)
T KOG2484|consen 138 KEFRKVVEASDVVLEVLDARDPLGTRCP--EVEEAVLQAHGNKKLILVLNKIDLVPRE 193 (435)
T ss_pred HHHHHHHhhhheEEEeeeccCCCCCCCh--hHHHHHHhccCCceEEEEeehhccCCHH
Confidence 3344456679999999999999776553 2333333222458899999999996543
No 410
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=95.14 E-value=0.022 Score=37.82 Aligned_cols=103 Identities=13% Similarity=-0.022 Sum_probs=57.4
Q ss_pred EEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEEEeC
Q 028595 7 LACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSL 86 (207)
Q Consensus 7 i~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~ 86 (207)
|+++|..+..|||++...+...--......+...+ ..... ...+.+.|+|+.... .....+..+|.++++.+.
T Consensus 2 i~~~~~kgg~gkt~~~~~la~~~~~~~~~~~~l~d----~d~~~-~~D~IIiDtpp~~~~--~~~~~l~~aD~vlvvv~~ 74 (106)
T cd03111 2 IAFIGAKGGVGATTLAANLAVALAKEAGRRVLLVD----LDLQF-GDDYVVVDLGRSLDE--VSLAALDQADRVFLVTQQ 74 (106)
T ss_pred EEEECCCCCCcHHHHHHHHHHHHHhcCCCcEEEEE----CCCCC-CCCEEEEeCCCCcCH--HHHHHHHHcCeEEEEecC
Confidence 56777777777999776653211000011111100 00000 016789999886532 234467789999998875
Q ss_pred CChhhHHHHHHHHHHHHhhcC-C-CCcEEEEeeC
Q 028595 87 VSRASYENVLKKWIPELQHYS-P-GVPVVLVGTK 118 (207)
Q Consensus 87 ~~~~s~~~~~~~~~~~i~~~~-~-~~piivv~nK 118 (207)
+ ..+...+ ..+++.+++.. + ...+.+|.|+
T Consensus 75 ~-~~s~~~~-~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 75 D-LPSIRNA-KRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred C-hHHHHHH-HHHHHHHHHcCCCCcCceEEEecC
Confidence 4 4556556 56777666544 2 3456677764
No 411
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.12 E-value=0.087 Score=45.00 Aligned_cols=89 Identities=20% Similarity=0.156 Sum_probs=48.6
Q ss_pred EEEEEEEeCCCCcccccc-------ccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccC
Q 028595 52 TVNLGLWDTAGQEDYNRL-------RPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED 124 (207)
Q Consensus 52 ~~~l~i~D~~G~~~~~~~-------~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~ 124 (207)
.+.+.|+||+|....... ... .. ....++|.+.+. +..++ ...+..+.. ..+.-+|.||.|...
T Consensus 428 ~~DLVLIDTaG~s~~D~~l~eeL~~L~a-a~-~~a~lLVLpAts--s~~Dl-~eii~~f~~---~~~~gvILTKlDEt~- 498 (559)
T PRK12727 428 DYKLVLIDTAGMGQRDRALAAQLNWLRA-AR-QVTSLLVLPANA--HFSDL-DEVVRRFAH---AKPQGVVLTKLDETG- 498 (559)
T ss_pred cCCEEEecCCCcchhhHHHHHHHHHHHH-hh-cCCcEEEEECCC--ChhHH-HHHHHHHHh---hCCeEEEEecCcCcc-
Confidence 478899999995432211 011 11 234566666654 23333 233333332 346779999999732
Q ss_pred cccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCCCCCH
Q 028595 125 KHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNV 165 (207)
Q Consensus 125 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~i 165 (207)
....+.......+. ++..++ +|++|
T Consensus 499 -------------~lG~aLsv~~~~~L-PI~yvt--~GQ~V 523 (559)
T PRK12727 499 -------------RFGSALSVVVDHQM-PITWVT--DGQRV 523 (559)
T ss_pred -------------chhHHHHHHHHhCC-CEEEEe--CCCCc
Confidence 34566677777777 544443 34444
No 412
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=94.98 E-value=0.044 Score=36.00 Aligned_cols=83 Identities=8% Similarity=0.030 Sum_probs=48.0
Q ss_pred EEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEEEeC
Q 028595 7 LACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSL 86 (207)
Q Consensus 7 i~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~ 86 (207)
|++.|..+..||||+...+...- ...-.++.. +..| ..+.+.++|+|+..... ....+..+|.++++.+.
T Consensus 2 i~~~~~kgG~Gkst~~~~la~~~-~~~~~~vl~------~d~d-~~~d~viiD~p~~~~~~--~~~~l~~ad~viv~~~~ 71 (104)
T cd02042 2 IAVANQKGGVGKTTTAVNLAAAL-ARRGKRVLL------IDLD-PQYDYIIIDTPPSLGLL--TRNALAAADLVLIPVQP 71 (104)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHH-HhCCCcEEE------EeCC-CCCCEEEEeCcCCCCHH--HHHHHHHCCEEEEeccC
Confidence 56777665555999877654221 001011111 1111 12678899998865332 23567779999999986
Q ss_pred CChhhHHHHHHHHHH
Q 028595 87 VSRASYENVLKKWIP 101 (207)
Q Consensus 87 ~~~~s~~~~~~~~~~ 101 (207)
+..++..+ ..+++
T Consensus 72 -~~~s~~~~-~~~~~ 84 (104)
T cd02042 72 -SPLDLDGL-EKLLE 84 (104)
T ss_pred -CHHHHHHH-HHHHH
Confidence 45566666 45544
No 413
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=94.98 E-value=0.13 Score=41.38 Aligned_cols=75 Identities=16% Similarity=0.088 Sum_probs=43.7
Q ss_pred CcEEEEEEeCCChhhHHH-HHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhC-CcEE
Q 028595 77 ADVFVLAFSLVSRASYEN-VLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG-ASYY 154 (207)
Q Consensus 77 ~d~~i~v~d~~~~~s~~~-~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~ 154 (207)
-|+++-|.|..+-..... ....+..++.. -=+|+.||.|+.+.. ..+..+...++++ ..++
T Consensus 117 ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~-----AD~ivlNK~Dlv~~~------------~l~~l~~~l~~lnp~A~i 179 (323)
T COG0523 117 LDGVVTVVDAAHFLEGLDAIAELAEDQLAF-----ADVIVLNKTDLVDAE------------ELEALEARLRKLNPRARI 179 (323)
T ss_pred eceEEEEEeHHHhhhhHHHHHHHHHHHHHh-----CcEEEEecccCCCHH------------HHHHHHHHHHHhCCCCeE
Confidence 588999999876544332 21233333322 137889999997664 2344555666654 3477
Q ss_pred EEeccCCCCCHHHHH
Q 028595 155 IECSSKTQQNVKAVF 169 (207)
Q Consensus 155 ~e~Sa~~~~~i~~~f 169 (207)
+.+|.. +....+++
T Consensus 180 ~~~~~~-~~~~~~ll 193 (323)
T COG0523 180 IETSYG-DVDLAELL 193 (323)
T ss_pred EEcccc-CCCHHHhh
Confidence 777773 34443333
No 414
>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []. CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].
Probab=94.80 E-value=0.53 Score=34.11 Aligned_cols=137 Identities=9% Similarity=0.024 Sum_probs=84.4
Q ss_pred eeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEEE
Q 028595 5 AKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 84 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 84 (207)
..|.++|..+.+ +..|...+.... +.+.+++.-...-... ......=...|.++|++
T Consensus 16 atiLLVg~e~~~-~~~LA~a~l~~~---------------------~~~~l~Vh~a~sLPLp-~e~~~lRprIDlIVFvi 72 (176)
T PF11111_consen 16 ATILLVGTEEAL-LQQLAEAMLEED---------------------KEFKLKVHLAKSLPLP-SENNNLRPRIDLIVFVI 72 (176)
T ss_pred eEEEEecccHHH-HHHHHHHHHhhc---------------------cceeEEEEEeccCCCc-ccccCCCceeEEEEEEE
Confidence 457888888888 887777765321 0112222222111000 00011112469999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCCCCC
Q 028595 85 SLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQN 164 (207)
Q Consensus 85 d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~ 164 (207)
|....-|++.+ +.-+..+....---.+.++++-..-.+... +...+..+++..|++ |++.+.-.+.++
T Consensus 73 nl~sk~SL~~v-e~SL~~vd~~fflGKVCfl~t~a~~~~~~s----------v~~~~V~kla~~y~~-plL~~~le~~~~ 140 (176)
T PF11111_consen 73 NLHSKYSLQSV-EASLSHVDPSFFLGKVCFLATNAGRESHCS----------VHPNEVRKLAATYNS-PLLFADLENEEG 140 (176)
T ss_pred ecCCcccHHHH-HHHHhhCChhhhccceEEEEcCCCcccccc----------cCHHHHHHHHHHhCC-CEEEeecccchH
Confidence 99999999998 444444422221123556666555444333 488999999999998 888888777777
Q ss_pred HHHHHHHHHHHH
Q 028595 165 VKAVFDAAIKVV 176 (207)
Q Consensus 165 i~~~f~~i~~~~ 176 (207)
...+=+.+++.+
T Consensus 141 ~~~lAqRLL~~l 152 (176)
T PF11111_consen 141 RTSLAQRLLRML 152 (176)
T ss_pred HHHHHHHHHHHH
Confidence 777777776655
No 415
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=94.74 E-value=0.013 Score=42.49 Aligned_cols=52 Identities=12% Similarity=-0.015 Sum_probs=33.2
Q ss_pred eEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeC
Q 028595 6 KLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDT 60 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~ 60 (207)
+|.+-|.+++| ||||+++++..- .... -.++-.++..+.-+|..+-+.+.|.
T Consensus 1 ~i~iTG~pG~G-KTTll~k~i~~l-~~~~-~~v~Gf~t~evr~~g~r~GF~iv~l 52 (168)
T PF03266_consen 1 HIFITGPPGVG-KTTLLKKVIEEL-KKKG-LPVGGFYTEEVRENGRRIGFDIVDL 52 (168)
T ss_dssp EEEEES-TTSS-HHHHHHHHHHHH-HHTC-GGEEEEEEEEEETTSSEEEEEEEET
T ss_pred CEEEECcCCCC-HHHHHHHHHHHh-hccC-CccceEEeecccCCCceEEEEEEEC
Confidence 68899999999 999999987332 1111 1233344555555666777777777
No 416
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=94.66 E-value=0.25 Score=40.52 Aligned_cols=115 Identities=17% Similarity=0.135 Sum_probs=69.2
Q ss_pred ecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcE
Q 028595 74 YRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASY 153 (207)
Q Consensus 74 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 153 (207)
+-.+|++|-|.|+.|+-.-.. ......+.+..|..+++.|+||+||.+.. ++..=...+++++.- -
T Consensus 211 iDSSDVvvqVlDARDPmGTrc--~~ve~ylkke~phKHli~vLNKvDLVPtw-----------vt~~Wv~~lSkeyPT-i 276 (572)
T KOG2423|consen 211 IDSSDVVVQVLDARDPMGTRC--KHVEEYLKKEKPHKHLIYVLNKVDLVPTW-----------VTAKWVRHLSKEYPT-I 276 (572)
T ss_pred hcccceeEEeeeccCCccccc--HHHHHHHhhcCCcceeEEEeeccccccHH-----------HHHHHHHHHhhhCcc-e
Confidence 346899999999999855433 33444555556789999999999997654 244445555555543 3
Q ss_pred EEEeccCCCCC---HHHHHHHHHHHHhCCCc--------------chhhhcccCCCeEEeeecCCc
Q 028595 154 YIECSSKTQQN---VKAVFDAAIKVVIKPPQ--------------KQKEKKKKQRGCLLNVFCGRN 202 (207)
Q Consensus 154 ~~e~Sa~~~~~---i~~~f~~i~~~~~~~~~--------------~~~~~~~~~~~c~~~~~~~~~ 202 (207)
-|..|..+..| +..++..+.+...+.++ ..-+.-++++-|..--+.|-+
T Consensus 277 AfHAsi~nsfGKgalI~llRQf~kLh~dkkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGET 342 (572)
T KOG2423|consen 277 AFHASINNSFGKGALIQLLRQFAKLHSDKKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGET 342 (572)
T ss_pred eeehhhcCccchhHHHHHHHHHHhhccCccceeeeeecCCCCchHHHHHHHhhcccccccCCCCcc
Confidence 34555554444 45555555555443322 333445566666665555543
No 417
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.60 E-value=0.09 Score=43.06 Aligned_cols=133 Identities=14% Similarity=0.081 Sum_probs=68.6
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCCc-cc--cCc-eeeee---------------eeEEE-E-CC----------eE
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSIW-DY--IPT-VFDNF---------------SANVV-A-EG----------TT 52 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~-~~--~~t-~~~~~---------------~~~~~-~-~~----------~~ 52 (207)
...++++|..++| |||++.+|...-... .. .-- ..+.| ...+. + ++ ..
T Consensus 137 g~ii~lvGptGvG-KTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~ 215 (374)
T PRK14722 137 GGVFALMGPTGVG-KTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRN 215 (374)
T ss_pred CcEEEEECCCCCC-HHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcC
Confidence 3468899999999 999999986431100 00 000 00111 00010 1 10 23
Q ss_pred EEEEEEeCCCCccccccc----cc--eecCCcEEEEEEeCCC-hhhHHHHHHHHHHHHhhcCCC-C-cEEEEeeCCCccc
Q 028595 53 VNLGLWDTAGQEDYNRLR----PL--SYRGADVFVLAFSLVS-RASYENVLKKWIPELQHYSPG-V-PVVLVGTKLDLRE 123 (207)
Q Consensus 53 ~~l~i~D~~G~~~~~~~~----~~--~~~~~d~~i~v~d~~~-~~s~~~~~~~~~~~i~~~~~~-~-piivv~nK~D~~~ 123 (207)
..+.++||+|....+... .. ......-.++|.+.+. .+...++...|.......... . +-=+|.||.|...
T Consensus 216 ~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt~ 295 (374)
T PRK14722 216 KHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEAS 295 (374)
T ss_pred CCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccccCC
Confidence 578899999965433211 11 1122345678888775 455555434443332211111 1 2357789999643
Q ss_pred CcccccCCCCCcccCHHHHHHHHHHhCC
Q 028595 124 DKHYLADHPGLVPVTTAQGEELRKQIGA 151 (207)
Q Consensus 124 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 151 (207)
....+..++...+.
T Consensus 296 --------------~~G~~l~~~~~~~l 309 (374)
T PRK14722 296 --------------NLGGVLDTVIRYKL 309 (374)
T ss_pred --------------CccHHHHHHHHHCc
Confidence 33456667777776
No 418
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=94.54 E-value=0.035 Score=38.17 Aligned_cols=24 Identities=4% Similarity=-0.125 Sum_probs=20.5
Q ss_pred eeEEEEecccccceeeeeeeccCCC
Q 028595 5 AKLACLFATQVTSFLLYVLSVSGRS 29 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~~~ 29 (207)
.-+++.|.+++| ||+|++.+...-
T Consensus 20 ~~v~i~G~~G~G-KT~l~~~i~~~~ 43 (151)
T cd00009 20 KNLLLYGPPGTG-KTTLARAIANEL 43 (151)
T ss_pred CeEEEECCCCCC-HHHHHHHHHHHh
Confidence 458999999999 999999987653
No 419
>PRK08118 topology modulation protein; Reviewed
Probab=94.47 E-value=0.0089 Score=43.28 Aligned_cols=23 Identities=4% Similarity=-0.094 Sum_probs=20.4
Q ss_pred eeEEEEecccccceeeeeeeccCC
Q 028595 5 AKLACLFATQVTSFLLYVLSVSGR 28 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~~ 28 (207)
.+|+|+|.+++| ||||...+...
T Consensus 2 ~rI~I~G~~GsG-KSTlak~L~~~ 24 (167)
T PRK08118 2 KKIILIGSGGSG-KSTLARQLGEK 24 (167)
T ss_pred cEEEEECCCCCC-HHHHHHHHHHH
Confidence 589999999999 99999998744
No 420
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=94.46 E-value=0.097 Score=42.98 Aligned_cols=125 Identities=19% Similarity=0.147 Sum_probs=67.0
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCCccccCcee----eeeee-----------------EEEEC----------CeE
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVF----DNFSA-----------------NVVAE----------GTT 52 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~----~~~~~-----------------~~~~~----------~~~ 52 (207)
...|+++|+.+|| |||-+-.|...-....-.+.++ ++|.+ .+..+ =..
T Consensus 203 ~~vi~LVGPTGVG-KTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~ 281 (407)
T COG1419 203 KRVIALVGPTGVG-KTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRD 281 (407)
T ss_pred CcEEEEECCCCCc-HHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhc
Confidence 4578999999999 9998877653322111111111 11110 00111 134
Q ss_pred EEEEEEeCCCCccccccc----cceec--CCcEEEEEEeCCC-hhhHHHHHHHHHHHHhhcCCCCcE-EEEeeCCCcccC
Q 028595 53 VNLGLWDTAGQEDYNRLR----PLSYR--GADVFVLAFSLVS-RASYENVLKKWIPELQHYSPGVPV-VLVGTKLDLRED 124 (207)
Q Consensus 53 ~~l~i~D~~G~~~~~~~~----~~~~~--~~d~~i~v~d~~~-~~s~~~~~~~~~~~i~~~~~~~pi-ivv~nK~D~~~~ 124 (207)
+.+.|.||.|...++... ..++. ...-+.+|.+++. .+...++ +..+. .+|+ -++.||.|...
T Consensus 282 ~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlkei----~~~f~----~~~i~~~I~TKlDET~- 352 (407)
T COG1419 282 CDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDLKEI----IKQFS----LFPIDGLIFTKLDETT- 352 (407)
T ss_pred CCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcchHHHHHH----HHHhc----cCCcceeEEEcccccC-
Confidence 678899999977664432 12221 2334556666654 3333333 33332 3455 57889999643
Q ss_pred cccccCCCCCcccCHHHHHHHHHHhCC
Q 028595 125 KHYLADHPGLVPVTTAQGEELRKQIGA 151 (207)
Q Consensus 125 ~~~~~~~~~~~~v~~~~~~~~~~~~~~ 151 (207)
.......+..+.+.
T Consensus 353 -------------s~G~~~s~~~e~~~ 366 (407)
T COG1419 353 -------------SLGNLFSLMYETRL 366 (407)
T ss_pred -------------chhHHHHHHHHhCC
Confidence 44556666666665
No 421
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=94.40 E-value=0.78 Score=39.35 Aligned_cols=88 Identities=18% Similarity=0.302 Sum_probs=60.3
Q ss_pred cCCcEEEEEEeCC----------------Ch----hhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCC
Q 028595 75 RGADVFVLAFSLV----------------SR----ASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGL 134 (207)
Q Consensus 75 ~~~d~~i~v~d~~----------------~~----~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~ 134 (207)
-..|++++|-.+. |. ..+.++ .+.++.++++ ++|++|+.||.|...+.
T Consensus 321 l~P~~~VlVaTvraLK~hgg~~~~~l~~en~Eal~sGl~NL-~RHIenvr~F--GvPvVVAINKFd~DTe~--------- 388 (557)
T PRK13505 321 LKPDAVVIVATVRALKMHGGVAKDDLKEENVEALKKGFANL-ERHIENIRKF--GVPVVVAINKFVTDTDA--------- 388 (557)
T ss_pred CCCCEEEEEeehHHHHHcCCCChhhccccCHHHHHHHHHHH-HHHHHHHHHc--CCCEEEEEeCCCCCCHH---------
Confidence 3468888888543 11 233444 5556666665 89999999999986553
Q ss_pred cccCHHHHHHHHHHhCCcEEEEec--cCCCCCHHHHHHHHHHHHhC
Q 028595 135 VPVTTAQGEELRKQIGASYYIECS--SKTQQNVKAVFDAAIKVVIK 178 (207)
Q Consensus 135 ~~v~~~~~~~~~~~~~~~~~~e~S--a~~~~~i~~~f~~i~~~~~~ 178 (207)
..+.++++|++.|. ++..+. +.=|+|-.++-+.+++.+.+
T Consensus 389 ---Ei~~I~~~c~e~Gv-~va~~~~~~~Gg~Gai~LA~aVveA~~~ 430 (557)
T PRK13505 389 ---EIAALKELCEELGV-EVALSEVWAKGGEGGVELAEKVVELIEE 430 (557)
T ss_pred ---HHHHHHHHHHHcCC-CEEEecccccCCcchHHHHHHHHHHHhc
Confidence 44678999999998 666433 33467777877777777663
No 422
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=94.36 E-value=0.059 Score=45.12 Aligned_cols=83 Identities=17% Similarity=0.094 Sum_probs=46.7
Q ss_pred EEEEEEeCCCCcccccc-----c-cceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcE-EEEeeCCCcccCc
Q 028595 53 VNLGLWDTAGQEDYNRL-----R-PLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPV-VLVGTKLDLREDK 125 (207)
Q Consensus 53 ~~l~i~D~~G~~~~~~~-----~-~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~pi-ivv~nK~D~~~~~ 125 (207)
..+.|+||+|....... . -.....+|.+++|.|.+... ++ ......+. +..++ -+|.||.|...
T Consensus 176 ~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq---~a-v~~a~~F~---~~l~i~gvIlTKlD~~a-- 246 (437)
T PRK00771 176 ADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQ---QA-KNQAKAFH---EAVGIGGIIITKLDGTA-- 246 (437)
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccH---HH-HHHHHHHH---hcCCCCEEEEecccCCC--
Confidence 47899999996543211 0 01133578999999987743 22 12222232 23433 57889999632
Q ss_pred ccccCCCCCcccCHHHHHHHHHHhCCcEEEEe
Q 028595 126 HYLADHPGLVPVTTAQGEELRKQIGASYYIEC 157 (207)
Q Consensus 126 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~ 157 (207)
.-..+...+...+. |...+
T Consensus 247 ------------~~G~~ls~~~~~~~-Pi~fi 265 (437)
T PRK00771 247 ------------KGGGALSAVAETGA-PIKFI 265 (437)
T ss_pred ------------cccHHHHHHHHHCc-CEEEE
Confidence 22445566666666 44433
No 423
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.33 E-value=0.0093 Score=44.67 Aligned_cols=24 Identities=17% Similarity=0.109 Sum_probs=20.3
Q ss_pred EeccCCCCCHHHHHHHHHHHHhCC
Q 028595 156 ECSSKTQQNVKAVFDAAIKVVIKP 179 (207)
Q Consensus 156 e~Sa~~~~~i~~~f~~i~~~~~~~ 179 (207)
.|||++.+-+.++++-+.+...+.
T Consensus 163 PTSALDPElv~EVL~vm~~LA~eG 186 (240)
T COG1126 163 PTSALDPELVGEVLDVMKDLAEEG 186 (240)
T ss_pred CcccCCHHHHHHHHHHHHHHHHcC
Confidence 399999999999999888777654
No 424
>PRK14738 gmk guanylate kinase; Provisional
Probab=94.31 E-value=0.012 Score=44.17 Aligned_cols=23 Identities=9% Similarity=-0.151 Sum_probs=19.7
Q ss_pred eeEEEEecccccceeeeeeeccCC
Q 028595 5 AKLACLFATQVTSFLLYVLSVSGR 28 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~~ 28 (207)
.-|+++|++++| ||||++.+...
T Consensus 14 ~~ivi~GpsG~G-K~tl~~~L~~~ 36 (206)
T PRK14738 14 LLVVISGPSGVG-KDAVLARMRER 36 (206)
T ss_pred eEEEEECcCCCC-HHHHHHHHHhc
Confidence 457889999999 99999999754
No 425
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=94.23 E-value=0.064 Score=34.18 Aligned_cols=69 Identities=12% Similarity=0.009 Sum_probs=41.8
Q ss_pred EEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCcccccc-ccceecCCcEEEEEEe
Q 028595 7 LACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRL-RPLSYRGADVFVLAFS 85 (207)
Q Consensus 7 i~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~-~~~~~~~~d~~i~v~d 85 (207)
+++.|..++| ||++...+...--... .....++ .+.+.|+++....... .......+|.++++.+
T Consensus 2 ~~~~g~~G~G-ktt~~~~l~~~l~~~g---------~~v~~~~----d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~ 67 (99)
T cd01983 2 IVVTGKGGVG-KTTLAANLAAALAKRG---------KRVLLID----DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTT 67 (99)
T ss_pred EEEECCCCCC-HHHHHHHHHHHHHHCC---------CeEEEEC----CEEEEeCCCCccchhhhhhhhhhhCCEEEEecC
Confidence 5677778888 9999988753310001 1112222 5789999876543221 1345567899999988
Q ss_pred CCCh
Q 028595 86 LVSR 89 (207)
Q Consensus 86 ~~~~ 89 (207)
....
T Consensus 68 ~~~~ 71 (99)
T cd01983 68 PEAL 71 (99)
T ss_pred Cchh
Confidence 6543
No 426
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=94.20 E-value=0.01 Score=45.37 Aligned_cols=22 Identities=14% Similarity=0.021 Sum_probs=19.6
Q ss_pred EEEEecccccceeeeeeeccCCC
Q 028595 7 LACLFATQVTSFLLYVLSVSGRS 29 (207)
Q Consensus 7 i~iiG~~~~GgKssli~~l~~~~ 29 (207)
|+++|.++|| ||||+|.+.+-.
T Consensus 32 vsilGpSGcG-KSTLLriiAGL~ 53 (248)
T COG1116 32 VAILGPSGCG-KSTLLRLIAGLE 53 (248)
T ss_pred EEEECCCCCC-HHHHHHHHhCCC
Confidence 7899999999 999999987654
No 427
>KOG2423 consensus Nucleolar GTPase [General function prediction only]
Probab=94.00 E-value=0.011 Score=48.17 Aligned_cols=83 Identities=8% Similarity=-0.041 Sum_probs=49.8
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccc--cccccceecCCcEEE
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY--NRLRPLSYRGADVFV 81 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~--~~~~~~~~~~~d~~i 81 (207)
.+-|.+||-+|+| |||+||.|-..+.. ...|..|.+..=++.. -.-.+-|+|+||---. .+.....+ .+++
T Consensus 307 qISVGfiGYPNvG-KSSiINTLR~KkVC-kvAPIpGETKVWQYIt--LmkrIfLIDcPGvVyps~dset~ivL---kGvV 379 (572)
T KOG2423|consen 307 QISVGFIGYPNVG-KSSIINTLRKKKVC-KVAPIPGETKVWQYIT--LMKRIFLIDCPGVVYPSSDSETDIVL---KGVV 379 (572)
T ss_pred ceeeeeecCCCCc-hHHHHHHHhhcccc-cccCCCCcchHHHHHH--HHhceeEecCCCccCCCCCchHHHHh---hcee
Confidence 4678999999999 99999999888754 3334444332100000 0123568999993211 12222222 3677
Q ss_pred EEEeCCChhhHH
Q 028595 82 LAFSLVSRASYE 93 (207)
Q Consensus 82 ~v~d~~~~~s~~ 93 (207)
-|=.+++++.+-
T Consensus 380 RVenv~~pe~yi 391 (572)
T KOG2423|consen 380 RVENVKNPEDYI 391 (572)
T ss_pred eeeecCCHHHHH
Confidence 788888876654
No 428
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=93.98 E-value=0.026 Score=42.34 Aligned_cols=41 Identities=12% Similarity=0.057 Sum_probs=26.8
Q ss_pred EEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEE
Q 028595 7 LACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTV 53 (207)
Q Consensus 7 i~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~ 53 (207)
.+++|++++| ||||++.|..=+ +. .| +....-.+.++|+++
T Consensus 36 TAlIGPSGcG-KST~LR~lNRmn--dl-~~--~~r~~G~v~~~g~ni 76 (253)
T COG1117 36 TALIGPSGCG-KSTLLRCLNRMN--DL-IP--GARVEGEVLLDGKNI 76 (253)
T ss_pred EEEECCCCcC-HHHHHHHHHhhc--cc-Cc--CceEEEEEEECCeec
Confidence 4789999999 999999984221 11 12 334455677777654
No 429
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=93.94 E-value=0.012 Score=39.71 Aligned_cols=22 Identities=5% Similarity=-0.186 Sum_probs=19.3
Q ss_pred eEEEEecccccceeeeeeeccCC
Q 028595 6 KLACLFATQVTSFLLYVLSVSGR 28 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~~ 28 (207)
.|+|.|.+++| |||+.+.|...
T Consensus 1 vI~I~G~~gsG-KST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSG-KSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSS-HHHHHHHHHHH
T ss_pred CEEEECCCCCC-HHHHHHHHHHH
Confidence 48899999999 99999999654
No 430
>PRK14737 gmk guanylate kinase; Provisional
Probab=93.84 E-value=0.017 Score=42.54 Aligned_cols=24 Identities=0% Similarity=-0.242 Sum_probs=20.1
Q ss_pred eeEEEEecccccceeeeeeeccCCC
Q 028595 5 AKLACLFATQVTSFLLYVLSVSGRS 29 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~~~ 29 (207)
.=|+++|.+++| ||||+++++...
T Consensus 5 ~~ivl~GpsG~G-K~tl~~~l~~~~ 28 (186)
T PRK14737 5 KLFIISSVAGGG-KSTIIQALLEEH 28 (186)
T ss_pred eEEEEECCCCCC-HHHHHHHHHhcC
Confidence 347889999999 999999998653
No 431
>PRK06217 hypothetical protein; Validated
Probab=93.79 E-value=0.015 Score=42.68 Aligned_cols=23 Identities=9% Similarity=-0.058 Sum_probs=20.4
Q ss_pred eeEEEEecccccceeeeeeeccCC
Q 028595 5 AKLACLFATQVTSFLLYVLSVSGR 28 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~~ 28 (207)
.+|+|+|.+++| ||||..+|...
T Consensus 2 ~~I~i~G~~GsG-KSTla~~L~~~ 24 (183)
T PRK06217 2 MRIHITGASGSG-TTTLGAALAER 24 (183)
T ss_pred eEEEEECCCCCC-HHHHHHHHHHH
Confidence 579999999999 99999998744
No 432
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=93.77 E-value=0.015 Score=42.43 Aligned_cols=25 Identities=8% Similarity=-0.206 Sum_probs=20.9
Q ss_pred ceeEEEEecccccceeeeeeeccCCC
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRS 29 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~ 29 (207)
-.=+++.|++++| ||||+++|....
T Consensus 4 G~l~vlsgPSG~G-KsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVG-KSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCC-HHHHHHHHHhhc
Confidence 3457888999999 999999998765
No 433
>PRK07261 topology modulation protein; Provisional
Probab=93.75 E-value=0.015 Score=42.30 Aligned_cols=22 Identities=14% Similarity=-0.058 Sum_probs=19.5
Q ss_pred eEEEEecccccceeeeeeeccCC
Q 028595 6 KLACLFATQVTSFLLYVLSVSGR 28 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~~ 28 (207)
+|+++|.+++| ||||...+...
T Consensus 2 ri~i~G~~GsG-KSTla~~l~~~ 23 (171)
T PRK07261 2 KIAIIGYSGSG-KSTLARKLSQH 23 (171)
T ss_pred EEEEEcCCCCC-HHHHHHHHHHH
Confidence 79999999999 99999998643
No 434
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=93.70 E-value=0.016 Score=40.07 Aligned_cols=24 Identities=8% Similarity=-0.072 Sum_probs=20.5
Q ss_pred eeEEEEecccccceeeeeeeccCCC
Q 028595 5 AKLACLFATQVTSFLLYVLSVSGRS 29 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~~~ 29 (207)
-.++++|..++| ||||++.+.+..
T Consensus 12 ~~~~i~G~nGsG-KStLl~~l~g~~ 35 (137)
T PF00005_consen 12 EIVAIVGPNGSG-KSTLLKALAGLL 35 (137)
T ss_dssp SEEEEEESTTSS-HHHHHHHHTTSS
T ss_pred CEEEEEccCCCc-cccceeeecccc
Confidence 367999999999 999999887653
No 435
>PRK10867 signal recognition particle protein; Provisional
Probab=93.61 E-value=0.15 Score=42.60 Aligned_cols=85 Identities=15% Similarity=0.102 Sum_probs=46.5
Q ss_pred EEEEEEEeCCCCccccc-ccc---c--eecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCc-EEEEeeCCCcccC
Q 028595 52 TVNLGLWDTAGQEDYNR-LRP---L--SYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVP-VVLVGTKLDLRED 124 (207)
Q Consensus 52 ~~~l~i~D~~G~~~~~~-~~~---~--~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~p-iivv~nK~D~~~~ 124 (207)
.+.+.|+||+|...... +.. . .....+.+++|.|.+..+... .....+.+ .++ --+|.||.|...
T Consensus 183 ~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~gq~av----~~a~~F~~---~~~i~giIlTKlD~~~- 254 (433)
T PRK10867 183 GYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTGQDAV----NTAKAFNE---ALGLTGVILTKLDGDA- 254 (433)
T ss_pred CCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccHHHHH----HHHHHHHh---hCCCCEEEEeCccCcc-
Confidence 36789999999543211 110 0 012467789999987543222 22233332 232 357779999532
Q ss_pred cccccCCCCCcccCHHHHHHHHHHhCCcEEEEec
Q 028595 125 KHYLADHPGLVPVTTAQGEELRKQIGASYYIECS 158 (207)
Q Consensus 125 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~S 158 (207)
....+...+...+. |+..++
T Consensus 255 -------------rgG~alsi~~~~~~-PI~fig 274 (433)
T PRK10867 255 -------------RGGAALSIRAVTGK-PIKFIG 274 (433)
T ss_pred -------------cccHHHHHHHHHCc-CEEEEe
Confidence 22346667777776 544443
No 436
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=93.52 E-value=0.017 Score=42.30 Aligned_cols=22 Identities=5% Similarity=-0.053 Sum_probs=20.5
Q ss_pred eEEEEecccccceeeeeeeccCC
Q 028595 6 KLACLFATQVTSFLLYVLSVSGR 28 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~~ 28 (207)
+|+++|.+++| |||+...|...
T Consensus 2 riiilG~pGaG-K~T~A~~La~~ 23 (178)
T COG0563 2 RILILGPPGAG-KSTLAKKLAKK 23 (178)
T ss_pred eEEEECCCCCC-HHHHHHHHHHH
Confidence 79999999999 99999999866
No 437
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.48 E-value=0.2 Score=44.73 Aligned_cols=92 Identities=20% Similarity=0.060 Sum_probs=48.4
Q ss_pred EEEEEEeCCCCcccccc-c---cce--ecCCcEEEEEEeCCC-hhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCc
Q 028595 53 VNLGLWDTAGQEDYNRL-R---PLS--YRGADVFVLAFSLVS-RASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK 125 (207)
Q Consensus 53 ~~l~i~D~~G~~~~~~~-~---~~~--~~~~d~~i~v~d~~~-~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~ 125 (207)
+.+.|+||+|....+.. . ... ....+-.++|.|.+. .+.+.++ ...+.....--+-=+|.||.|...
T Consensus 264 ~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i----~~~f~~~~~~~i~glIlTKLDEt~-- 337 (767)
T PRK14723 264 KHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEV----VHAYRHGAGEDVDGCIITKLDEAT-- 337 (767)
T ss_pred CCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHH----HHHHhhcccCCCCEEEEeccCCCC--
Confidence 56889999994332111 0 000 123456788888874 3444444 222222110013357899999643
Q ss_pred ccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCCCCCH
Q 028595 126 HYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNV 165 (207)
Q Consensus 126 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~i 165 (207)
....+..+....+. |+..++ +|++|
T Consensus 338 ------------~~G~iL~i~~~~~l-PI~yit--~GQ~V 362 (767)
T PRK14723 338 ------------HLGPALDTVIRHRL-PVHYVS--TGQKV 362 (767)
T ss_pred ------------CccHHHHHHHHHCC-CeEEEe--cCCCC
Confidence 33456667777777 544443 34455
No 438
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=93.36 E-value=0.81 Score=34.96 Aligned_cols=63 Identities=19% Similarity=0.249 Sum_probs=40.2
Q ss_pred EEEEEEeC-CCCccccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCC-CcEEEEeeCCCcc
Q 028595 53 VNLGLWDT-AGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPG-VPVVLVGTKLDLR 122 (207)
Q Consensus 53 ~~l~i~D~-~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~-~piivv~nK~D~~ 122 (207)
+.+.+.|| +|-|.+ -+....++|.+|.|.|.+- .|+..+ .+..++.++. + .++.+|.||.|-.
T Consensus 134 ~e~VivDtEAGiEHf---gRg~~~~vD~vivVvDpS~-~sl~ta-eri~~L~~el--g~k~i~~V~NKv~e~ 198 (255)
T COG3640 134 YEVVIVDTEAGIEHF---GRGTIEGVDLVIVVVDPSY-KSLRTA-ERIKELAEEL--GIKRIFVVLNKVDEE 198 (255)
T ss_pred CcEEEEecccchhhh---ccccccCCCEEEEEeCCcH-HHHHHH-HHHHHHHHHh--CCceEEEEEeeccch
Confidence 44556666 444443 2445678999999999764 444444 3444333332 5 7899999999953
No 439
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=93.23 E-value=0.014 Score=40.90 Aligned_cols=22 Identities=0% Similarity=-0.127 Sum_probs=19.2
Q ss_pred eEEEEecccccceeeeeeeccCC
Q 028595 6 KLACLFATQVTSFLLYVLSVSGR 28 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~~ 28 (207)
-|+++|..++| ||||+..|++.
T Consensus 2 vv~VvG~~~sG-KTTl~~~Li~~ 23 (140)
T PF03205_consen 2 VVQVVGPKNSG-KTTLIRKLINE 23 (140)
T ss_dssp EEEEEESTTSS-HHHHHHHHHHH
T ss_pred EEEEECCCCCC-HHHHHHHHHHH
Confidence 37899999999 99999998754
No 440
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=93.19 E-value=0.022 Score=43.61 Aligned_cols=26 Identities=4% Similarity=-0.203 Sum_probs=22.2
Q ss_pred ccceeEEEEecccccceeeeeeeccCC
Q 028595 2 ELLAKLACLFATQVTSFLLYVLSVSGR 28 (207)
Q Consensus 2 ~~~~ki~iiG~~~~GgKssli~~l~~~ 28 (207)
+..++++++|.+++| ||+|+..++..
T Consensus 11 ~~~fr~viIG~sGSG-KT~li~~lL~~ 36 (241)
T PF04665_consen 11 KDPFRMVIIGKSGSG-KTTLIKSLLYY 36 (241)
T ss_pred CCCceEEEECCCCCC-HHHHHHHHHHh
Confidence 456899999999999 99998888744
No 441
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=93.14 E-value=0.019 Score=43.47 Aligned_cols=22 Identities=9% Similarity=-0.123 Sum_probs=18.9
Q ss_pred eEEEEecccccceeeeeeeccCC
Q 028595 6 KLACLFATQVTSFLLYVLSVSGR 28 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~~ 28 (207)
-++++|.+++| ||||+|.+-+-
T Consensus 33 ~vaI~GpSGSG-KSTLLniig~l 54 (226)
T COG1136 33 FVAIVGPSGSG-KSTLLNLLGGL 54 (226)
T ss_pred EEEEECCCCCC-HHHHHHHHhcc
Confidence 47899999999 99999998543
No 442
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=93.12 E-value=0.02 Score=39.92 Aligned_cols=19 Identities=0% Similarity=-0.258 Sum_probs=17.5
Q ss_pred EEEEecccccceeeeeeecc
Q 028595 7 LACLFATQVTSFLLYVLSVS 26 (207)
Q Consensus 7 i~iiG~~~~GgKssli~~l~ 26 (207)
|+++|.+++| ||||+..+.
T Consensus 2 ii~~G~pgsG-KSt~a~~l~ 20 (143)
T PF13671_consen 2 IILCGPPGSG-KSTLAKRLA 20 (143)
T ss_dssp EEEEESTTSS-HHHHHHHHH
T ss_pred EEEECCCCCC-HHHHHHHHH
Confidence 6899999999 999999986
No 443
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=93.05 E-value=0.019 Score=34.93 Aligned_cols=21 Identities=5% Similarity=-0.149 Sum_probs=18.3
Q ss_pred EEEEecccccceeeeeeeccCC
Q 028595 7 LACLFATQVTSFLLYVLSVSGR 28 (207)
Q Consensus 7 i~iiG~~~~GgKssli~~l~~~ 28 (207)
|++.|.+++| |||+.+.+...
T Consensus 2 i~i~G~~gsG-Kst~~~~l~~~ 22 (69)
T cd02019 2 IAITGGSGSG-KSTVAKKLAEQ 22 (69)
T ss_pred EEEECCCCCC-HHHHHHHHHHH
Confidence 6889999999 99999998644
No 444
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=93.00 E-value=0.022 Score=45.80 Aligned_cols=22 Identities=9% Similarity=-0.010 Sum_probs=19.7
Q ss_pred EEEEecccccceeeeeeeccCCC
Q 028595 7 LACLFATQVTSFLLYVLSVSGRS 29 (207)
Q Consensus 7 i~iiG~~~~GgKssli~~l~~~~ 29 (207)
++++|++++| ||||++.+.+-.
T Consensus 32 ~vllGPSGcG-KSTlLr~IAGLe 53 (338)
T COG3839 32 VVLLGPSGCG-KSTLLRMIAGLE 53 (338)
T ss_pred EEEECCCCCC-HHHHHHHHhCCC
Confidence 7899999999 999999997654
No 445
>PF02263 GBP: Guanylate-binding protein, N-terminal domain; InterPro: IPR015894 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function, and an alpha-helical finger-like C-terminal domain (IPR003191 from INTERPRO). Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3QOF_A 3Q5E_C 3QNU_A 3Q5D_A 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=92.99 E-value=0.041 Score=42.84 Aligned_cols=59 Identities=17% Similarity=0.035 Sum_probs=39.6
Q ss_pred eEEEEecccccceeeeeeeccCCCCCc-----cccCceeeeeeeEEEECCeEEEEEEEeCCCCcc
Q 028595 6 KLACLFATQVTSFLLYVLSVSGRSSIW-----DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED 65 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~~~~~~-----~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~ 65 (207)
=|.|+|....| ||.|+|+|.+..-.. ....|.|..........+..+.+.+.||.|...
T Consensus 23 vvsi~G~~rtG-KSfLln~l~~~~~gF~~~~~~~~~T~Giw~w~~~~~~~~~~~v~llDteG~~~ 86 (260)
T PF02263_consen 23 VVSIVGPYRTG-KSFLLNQLLGPQSGFSWGPTVEPCTKGIWMWSEPLPDGEKVAVVLLDTEGLGD 86 (260)
T ss_dssp EEEEEEETTSS-HHHHHHHHCCBSSSSESSSCSSST-SCEEEECCE-TTSTCEEEEEEEEECBTT
T ss_pred EEEeecCCccc-hHHHHHHHhcccccccccCCCCCCCcceeeeecccccccceeEEEecchhccc
Confidence 36788888999 999999998653211 223455554444334456678999999988755
No 446
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=92.71 E-value=0.027 Score=46.58 Aligned_cols=24 Identities=13% Similarity=-0.047 Sum_probs=21.5
Q ss_pred ceeEEEEecccccceeeeeeeccCC
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGR 28 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~ 28 (207)
..+|+|+|++++| ||||++.|...
T Consensus 219 ~~~IvI~G~~gsG-KTTL~~~La~~ 242 (399)
T PRK08099 219 VRTVAILGGESSG-KSTLVNKLANI 242 (399)
T ss_pred CcEEEEEcCCCCC-HHHHHHHHHHH
Confidence 5689999999999 99999998754
No 447
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=92.66 E-value=0.026 Score=42.88 Aligned_cols=21 Identities=14% Similarity=0.058 Sum_probs=19.1
Q ss_pred eEEEEecccccceeeeeeeccC
Q 028595 6 KLACLFATQVTSFLLYVLSVSG 27 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~ 27 (207)
-|+++|.+++| ||||++++.+
T Consensus 32 ~VaiIG~SGaG-KSTLLR~lng 52 (258)
T COG3638 32 MVAIIGPSGAG-KSTLLRSLNG 52 (258)
T ss_pred EEEEECCCCCc-HHHHHHHHhc
Confidence 47999999999 9999999865
No 448
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=92.65 E-value=0.081 Score=38.77 Aligned_cols=24 Identities=13% Similarity=0.054 Sum_probs=19.0
Q ss_pred EeccCCCCCHHHHHHHHHHHHhCC
Q 028595 156 ECSSKTQQNVKAVFDAAIKVVIKP 179 (207)
Q Consensus 156 e~Sa~~~~~i~~~f~~i~~~~~~~ 179 (207)
++||++.+-+.+++.-+-+.+-+.
T Consensus 179 PTSALDPElVgEVLkv~~~LAeEg 202 (256)
T COG4598 179 PTSALDPELVGEVLKVMQDLAEEG 202 (256)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhC
Confidence 399999999999988776666544
No 449
>PHA02518 ParA-like protein; Provisional
Probab=92.61 E-value=0.54 Score=34.89 Aligned_cols=67 Identities=16% Similarity=0.157 Sum_probs=41.7
Q ss_pred EEEEEEEeCCCCccccccccceecCCcEEEEEEeCCCh--hhHHHHHHHHHHHHhhcCCCCcE-EEEeeCCCc
Q 028595 52 TVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSR--ASYENVLKKWIPELQHYSPGVPV-VLVGTKLDL 121 (207)
Q Consensus 52 ~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~--~s~~~~~~~~~~~i~~~~~~~pi-ivv~nK~D~ 121 (207)
.+.+.|+|+||.. .......+..+|.+|++...+.. .....+ ..++..+....+..|. .++.|+.+.
T Consensus 76 ~~d~viiD~p~~~--~~~~~~~l~~aD~viip~~ps~~~~~~~~~~-~~~~~~~~~~~~~~~~~~iv~n~~~~ 145 (211)
T PHA02518 76 GYDYVVVDGAPQD--SELARAALRIADMVLIPVQPSPFDIWAAPDL-VELIKARQEVTDGLPKFAFIISRAIK 145 (211)
T ss_pred cCCEEEEeCCCCc--cHHHHHHHHHCCEEEEEeCCChhhHHHHHHH-HHHHHHHHhhCCCCceEEEEEeccCC
Confidence 4788999999873 34456678889999999987642 233333 2334443333344544 567777653
No 450
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=92.53 E-value=0.027 Score=43.52 Aligned_cols=20 Identities=10% Similarity=-0.044 Sum_probs=17.3
Q ss_pred EEEEecccccceeeeeeeccC
Q 028595 7 LACLFATQVTSFLLYVLSVSG 27 (207)
Q Consensus 7 i~iiG~~~~GgKssli~~l~~ 27 (207)
++++|..++| ||||++.+.+
T Consensus 31 ~~iiGpNG~G-KSTLLk~l~g 50 (258)
T COG1120 31 TGILGPNGSG-KSTLLKCLAG 50 (258)
T ss_pred EEEECCCCCC-HHHHHHHHhc
Confidence 5788888888 9999999875
No 451
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=92.48 E-value=0.027 Score=41.41 Aligned_cols=22 Identities=5% Similarity=-0.156 Sum_probs=19.5
Q ss_pred eEEEEecccccceeeeeeeccCC
Q 028595 6 KLACLFATQVTSFLLYVLSVSGR 28 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~~ 28 (207)
.++++|.+++| ||||++.+.+.
T Consensus 4 ~i~l~G~sGsG-KsTl~~~l~~~ 25 (186)
T PRK10078 4 LIWLMGPSGSG-KDSLLAALRQR 25 (186)
T ss_pred EEEEECCCCCC-HHHHHHHHhcc
Confidence 58999999999 99999999654
No 452
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=92.42 E-value=0.051 Score=39.54 Aligned_cols=22 Identities=9% Similarity=-0.141 Sum_probs=19.6
Q ss_pred eEEEEecccccceeeeeeeccCC
Q 028595 6 KLACLFATQVTSFLLYVLSVSGR 28 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~~ 28 (207)
.|+++|.+++| ||||++.+...
T Consensus 3 ii~l~G~~GsG-KsTl~~~L~~~ 24 (180)
T TIGR03263 3 LIVISGPSGVG-KSTLVKALLEE 24 (180)
T ss_pred EEEEECCCCCC-HHHHHHHHHcc
Confidence 57899999999 99999999864
No 453
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=92.34 E-value=0.092 Score=42.40 Aligned_cols=25 Identities=4% Similarity=-0.172 Sum_probs=21.8
Q ss_pred ceeEEEEecccccceeeeeeeccCCC
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRS 29 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~ 29 (207)
...|++.|+.++| ||||++.++..-
T Consensus 160 ~~nili~G~tgSG-KTTll~aL~~~i 184 (332)
T PRK13900 160 KKNIIISGGTSTG-KTTFTNAALREI 184 (332)
T ss_pred CCcEEEECCCCCC-HHHHHHHHHhhC
Confidence 5689999999999 999999987543
No 454
>PRK14530 adenylate kinase; Provisional
Probab=92.28 E-value=0.036 Score=41.78 Aligned_cols=24 Identities=13% Similarity=-0.099 Sum_probs=20.4
Q ss_pred CccceeEEEEecccccceeeeeeecc
Q 028595 1 MELLAKLACLFATQVTSFLLYVLSVS 26 (207)
Q Consensus 1 m~~~~ki~iiG~~~~GgKssli~~l~ 26 (207)
|... +|+++|.+++| |||+.+.|.
T Consensus 1 ~~~~-~I~i~G~pGsG-KsT~~~~La 24 (215)
T PRK14530 1 MSQP-RILLLGAPGAG-KGTQSSNLA 24 (215)
T ss_pred CCCC-EEEEECCCCCC-HHHHHHHHH
Confidence 3344 79999999999 999999885
No 455
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.24 E-value=0.12 Score=42.15 Aligned_cols=52 Identities=12% Similarity=0.118 Sum_probs=33.2
Q ss_pred eEEEEEEEeCCCCcccc-cccc-----ceecCCcEEEEEEeCCChhhHHHHHHHHHHH
Q 028595 51 TTVNLGLWDTAGQEDYN-RLRP-----LSYRGADVFVLAFSLVSRASYENVLKKWIPE 102 (207)
Q Consensus 51 ~~~~l~i~D~~G~~~~~-~~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~ 102 (207)
+++.+.|.||+|....+ ++.. .-.-+.|-+|+|.|.+-....+.....|...
T Consensus 182 e~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~aFk~~ 239 (483)
T KOG0780|consen 182 ENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQARAFKET 239 (483)
T ss_pred cCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHHHHHHh
Confidence 46889999999954332 2211 1123479999999998776665553445443
No 456
>COG3172 NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]
Probab=92.14 E-value=0.032 Score=39.85 Aligned_cols=21 Identities=14% Similarity=-0.048 Sum_probs=17.4
Q ss_pred eeEEEEecccccceeeeeeecc
Q 028595 5 AKLACLFATQVTSFLLYVLSVS 26 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~ 26 (207)
.-|+++|+..+| ||+|+|++.
T Consensus 9 K~VailG~ESsG-KStLv~kLA 29 (187)
T COG3172 9 KTVAILGGESSG-KSTLVNKLA 29 (187)
T ss_pred eeeeeecCcccC-hHHHHHHHH
Confidence 356788888888 999999985
No 457
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=92.09 E-value=0.04 Score=40.03 Aligned_cols=27 Identities=4% Similarity=-0.199 Sum_probs=23.1
Q ss_pred CccceeEEEEecccccceeeeeeeccCC
Q 028595 1 MELLAKLACLFATQVTSFLLYVLSVSGR 28 (207)
Q Consensus 1 m~~~~ki~iiG~~~~GgKssli~~l~~~ 28 (207)
|....+|+++|.+++| ||||.+.+...
T Consensus 1 ~~~~~~I~liG~~GaG-KStl~~~La~~ 27 (172)
T PRK05057 1 MAEKRNIFLVGPMGAG-KSTIGRQLAQQ 27 (172)
T ss_pred CCCCCEEEEECCCCcC-HHHHHHHHHHH
Confidence 5566789999999999 99999998743
No 458
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=92.00 E-value=0.032 Score=38.96 Aligned_cols=21 Identities=5% Similarity=-0.167 Sum_probs=18.8
Q ss_pred EEEEecccccceeeeeeeccCC
Q 028595 7 LACLFATQVTSFLLYVLSVSGR 28 (207)
Q Consensus 7 i~iiG~~~~GgKssli~~l~~~ 28 (207)
|+++|.+++| ||||++.+...
T Consensus 2 i~i~GpsGsG-Kstl~~~L~~~ 22 (137)
T cd00071 2 IVLSGPSGVG-KSTLLKRLLEE 22 (137)
T ss_pred EEEECCCCCC-HHHHHHHHHhc
Confidence 6899999999 99999999754
No 459
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=91.97 E-value=0.034 Score=37.75 Aligned_cols=21 Identities=5% Similarity=-0.164 Sum_probs=18.5
Q ss_pred EEEEecccccceeeeeeeccCC
Q 028595 7 LACLFATQVTSFLLYVLSVSGR 28 (207)
Q Consensus 7 i~iiG~~~~GgKssli~~l~~~ 28 (207)
|++.|.+++| |||+++.|...
T Consensus 1 I~i~G~~GsG-KtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSG-KTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSS-HHHHHHHHHHH
T ss_pred CEEECCCCCC-HHHHHHHHHHH
Confidence 6899999999 99999998654
No 460
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=91.91 E-value=0.03 Score=40.74 Aligned_cols=22 Identities=5% Similarity=-0.189 Sum_probs=19.1
Q ss_pred eEEEEecccccceeeeeeeccCC
Q 028595 6 KLACLFATQVTSFLLYVLSVSGR 28 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~~ 28 (207)
-++++|.+++| ||||++.+...
T Consensus 3 ~~~i~G~sGsG-Kttl~~~l~~~ 24 (179)
T TIGR02322 3 LIYVVGPSGAG-KDTLLDYARAR 24 (179)
T ss_pred EEEEECCCCCC-HHHHHHHHHHH
Confidence 47899999999 99999998654
No 461
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=91.90 E-value=0.12 Score=39.44 Aligned_cols=22 Identities=5% Similarity=-0.115 Sum_probs=18.9
Q ss_pred eEEEEecccccceeeeeeeccCC
Q 028595 6 KLACLFATQVTSFLLYVLSVSGR 28 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~~ 28 (207)
-+.+||+.++| ||||+|.+++-
T Consensus 32 i~~LIGPNGAG-KTTlfNlitG~ 53 (250)
T COG0411 32 IVGLIGPNGAG-KTTLFNLITGF 53 (250)
T ss_pred EEEEECCCCCC-ceeeeeeeccc
Confidence 35789999999 99999999754
No 462
>PRK00300 gmk guanylate kinase; Provisional
Probab=91.87 E-value=0.042 Score=40.93 Aligned_cols=27 Identities=11% Similarity=-0.145 Sum_probs=22.3
Q ss_pred CccceeEEEEecccccceeeeeeeccCC
Q 028595 1 MELLAKLACLFATQVTSFLLYVLSVSGR 28 (207)
Q Consensus 1 m~~~~ki~iiG~~~~GgKssli~~l~~~ 28 (207)
|....-|+++|.+++| ||||++.+.+.
T Consensus 2 ~~~g~~i~i~G~sGsG-Kstl~~~l~~~ 28 (205)
T PRK00300 2 MRRGLLIVLSGPSGAG-KSTLVKALLER 28 (205)
T ss_pred CCCCCEEEEECCCCCC-HHHHHHHHHhh
Confidence 4445678999999999 99999998765
No 463
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=91.87 E-value=0.034 Score=40.69 Aligned_cols=23 Identities=9% Similarity=-0.054 Sum_probs=20.0
Q ss_pred eEEEEecccccceeeeeeeccCCC
Q 028595 6 KLACLFATQVTSFLLYVLSVSGRS 29 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~~~ 29 (207)
.++++|..++| ||||++.+.+-.
T Consensus 27 ~~~l~G~nGsG-KSTLl~~l~Gl~ 49 (177)
T cd03222 27 VIGIVGPNGTG-KTTAVKILAGQL 49 (177)
T ss_pred EEEEECCCCCh-HHHHHHHHHcCC
Confidence 57899999999 999999987653
No 464
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=91.83 E-value=0.041 Score=41.42 Aligned_cols=22 Identities=9% Similarity=-0.118 Sum_probs=19.8
Q ss_pred eEEEEecccccceeeeeeeccCC
Q 028595 6 KLACLFATQVTSFLLYVLSVSGR 28 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~~ 28 (207)
.++++|..++| ||||++.+.+-
T Consensus 32 ~~~l~G~nGsG-KSTLl~~i~Gl 53 (218)
T cd03255 32 FVAIVGPSGSG-KSTLLNILGGL 53 (218)
T ss_pred EEEEEcCCCCC-HHHHHHHHhCC
Confidence 57899999999 99999999865
No 465
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=91.82 E-value=0.036 Score=40.52 Aligned_cols=21 Identities=0% Similarity=-0.319 Sum_probs=18.8
Q ss_pred eeEEEEecccccceeeeeeecc
Q 028595 5 AKLACLFATQVTSFLLYVLSVS 26 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~ 26 (207)
.-|+++|.+++| |||+++.+.
T Consensus 4 ~ii~i~G~~GsG-KsTl~~~l~ 24 (188)
T TIGR01360 4 KIIFIVGGPGSG-KGTQCEKIV 24 (188)
T ss_pred cEEEEECCCCCC-HHHHHHHHH
Confidence 468899999999 999999987
No 466
>KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis]
Probab=91.81 E-value=0.21 Score=41.67 Aligned_cols=98 Identities=14% Similarity=0.211 Sum_probs=56.6
Q ss_pred ccceeEEEEecccccceeeeeeeccCCCCCccccCceeee---------------------------e-eeEEEEC----
Q 028595 2 ELLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDN---------------------------F-SANVVAE---- 49 (207)
Q Consensus 2 ~~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~---------------------------~-~~~~~~~---- 49 (207)
+...+|+|+|+.+|| ||||+.-|++.-- |+.|.. | ...+.++
T Consensus 611 DmdSRiaIVGPNGVG-KSTlLkLL~Gkl~-----P~~GE~RKnhrL~iG~FdQh~~E~L~~Eetp~EyLqr~FNlpyq~A 684 (807)
T KOG0066|consen 611 DMDSRIAIVGPNGVG-KSTLLKLLIGKLD-----PNDGELRKNHRLRIGWFDQHANEALNGEETPVEYLQRKFNLPYQEA 684 (807)
T ss_pred cccceeEEECCCCcc-HHHHHHHHhcCCC-----CCcchhhccceeeeechhhhhHHhhccccCHHHHHHHhcCCChHHH
Confidence 345689999999999 9999988875421 111111 1 1111111
Q ss_pred ----------CeEEEEEEEeCCCCcc-ccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC
Q 028595 50 ----------GTTVNLGLWDTAGQED-YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS 107 (207)
Q Consensus 50 ----------~~~~~l~i~D~~G~~~-~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~ 107 (207)
....++.+-|..|... .-.+....+...|++|+==. +|.-.++++ ..+...|..+.
T Consensus 685 RK~LG~fGL~sHAHTikikdLSGGQKaRValaeLal~~PDvlILDEP-TNNLDIESI-DALaEAIney~ 751 (807)
T KOG0066|consen 685 RKQLGTFGLASHAHTIKIKDLSGGQKARVALAELALGGPDVLILDEP-TNNLDIESI-DALAEAINEYN 751 (807)
T ss_pred HHHhhhhhhhhccceEeeeecCCcchHHHHHHHHhcCCCCEEEecCC-CCCcchhhH-HHHHHHHHhcc
Confidence 1225678899866443 34566677777787766443 433334444 45556666653
No 467
>PRK05480 uridine/cytidine kinase; Provisional
Probab=91.79 E-value=0.046 Score=40.91 Aligned_cols=26 Identities=0% Similarity=-0.229 Sum_probs=20.9
Q ss_pred ccceeEEEEecccccceeeeeeeccCC
Q 028595 2 ELLAKLACLFATQVTSFLLYVLSVSGR 28 (207)
Q Consensus 2 ~~~~ki~iiG~~~~GgKssli~~l~~~ 28 (207)
....-|++.|.+++| ||||.+.+...
T Consensus 4 ~~~~iI~I~G~sGsG-KTTl~~~l~~~ 29 (209)
T PRK05480 4 KKPIIIGIAGGSGSG-KTTVASTIYEE 29 (209)
T ss_pred CCCEEEEEECCCCCC-HHHHHHHHHHH
Confidence 345678888989998 99999998653
No 468
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=91.78 E-value=0.04 Score=40.88 Aligned_cols=22 Identities=9% Similarity=-0.047 Sum_probs=18.9
Q ss_pred eEEEEecccccceeeeeeeccCC
Q 028595 6 KLACLFATQVTSFLLYVLSVSGR 28 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~~ 28 (207)
-++++|.+++| ||||+|-+.+-
T Consensus 33 ~vv~lGpSGcG-KTTLLnl~AGf 54 (259)
T COG4525 33 LVVVLGPSGCG-KTTLLNLIAGF 54 (259)
T ss_pred EEEEEcCCCcc-HHHHHHHHhcC
Confidence 37899999999 99999987643
No 469
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=91.72 E-value=0.14 Score=39.91 Aligned_cols=92 Identities=13% Similarity=-0.001 Sum_probs=54.6
Q ss_pred CccceeEEEEecccccceeeeeeeccCCCCCcccc--CceeeeeeeEEEECCeEEEEEEEeCCC-CccccccccceecCC
Q 028595 1 MELLAKLACLFATQVTSFLLYVLSVSGRSSIWDYI--PTVFDNFSANVVAEGTTVNLGLWDTAG-QEDYNRLRPLSYRGA 77 (207)
Q Consensus 1 m~~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~l~i~D~~G-~~~~~~~~~~~~~~~ 77 (207)
|+.+.=|+++|..++| |||-+-..++.+....+. -|+.+.. .+....+..-+.-.+++- -+.|....+..++.+
T Consensus 124 ~~kRGLviiVGaTGSG-KSTtmAaMi~yRN~~s~gHIiTIEDPI--Efih~h~~CIvTQREvGvDTesw~~AlkNtlRQa 200 (375)
T COG5008 124 LAKRGLVIIVGATGSG-KSTTMAAMIGYRNKNSTGHIITIEDPI--EFIHKHKRCIVTQREVGVDTESWEVALKNTLRQA 200 (375)
T ss_pred cccCceEEEECCCCCC-chhhHHHHhcccccCCCCceEEecChH--HHHhcccceeEEeeeeccchHHHHHHHHHHHhcC
Confidence 5667779999999999 999888887766433322 2222221 111122222222222211 234444455566667
Q ss_pred cEEEEEEeCCChhhHHHH
Q 028595 78 DVFVLAFSLVSRASYENV 95 (207)
Q Consensus 78 d~~i~v~d~~~~~s~~~~ 95 (207)
-=+|+.-.+.++++.+++
T Consensus 201 pDvI~IGEvRsretMeyA 218 (375)
T COG5008 201 PDVILIGEVRSRETMEYA 218 (375)
T ss_pred CCeEEEeecccHhHHHHH
Confidence 777888888888888887
No 470
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=91.67 E-value=0.04 Score=41.27 Aligned_cols=22 Identities=5% Similarity=-0.173 Sum_probs=19.6
Q ss_pred eEEEEecccccceeeeeeeccCC
Q 028595 6 KLACLFATQVTSFLLYVLSVSGR 28 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~~ 28 (207)
.++++|..++| ||||++.+.+-
T Consensus 29 ~~~l~G~nGsG-KSTLl~~l~G~ 50 (211)
T cd03225 29 FVLIVGPNGSG-KSTLLRLLNGL 50 (211)
T ss_pred EEEEECCCCCC-HHHHHHHHhcC
Confidence 47899999999 99999999865
No 471
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=91.63 E-value=0.044 Score=36.49 Aligned_cols=20 Identities=5% Similarity=-0.147 Sum_probs=18.1
Q ss_pred eEEEEecccccceeeeeeecc
Q 028595 6 KLACLFATQVTSFLLYVLSVS 26 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~ 26 (207)
-++++|.+++| ||||++.+.
T Consensus 17 ~v~I~GpSGsG-KSTLl~~l~ 36 (107)
T cd00820 17 GVLITGDSGIG-KTELALELI 36 (107)
T ss_pred EEEEEcCCCCC-HHHHHHHhh
Confidence 58999999999 999999975
No 472
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=91.61 E-value=0.042 Score=41.56 Aligned_cols=22 Identities=14% Similarity=-0.001 Sum_probs=19.5
Q ss_pred EEEEecccccceeeeeeeccCCC
Q 028595 7 LACLFATQVTSFLLYVLSVSGRS 29 (207)
Q Consensus 7 i~iiG~~~~GgKssli~~l~~~~ 29 (207)
++++|..++| ||||++.+++--
T Consensus 32 v~llG~NGaG-KTTlLkti~Gl~ 53 (237)
T COG0410 32 VALLGRNGAG-KTTLLKTIMGLV 53 (237)
T ss_pred EEEECCCCCC-HHHHHHHHhCCC
Confidence 6899999999 999999998664
No 473
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=91.58 E-value=0.042 Score=44.49 Aligned_cols=22 Identities=9% Similarity=-0.005 Sum_probs=19.7
Q ss_pred EEEEecccccceeeeeeeccCCC
Q 028595 7 LACLFATQVTSFLLYVLSVSGRS 29 (207)
Q Consensus 7 i~iiG~~~~GgKssli~~l~~~~ 29 (207)
++++|+++|| |||+++.+.+-.
T Consensus 34 ~~lLGPSGcG-KTTlLR~IAGfe 55 (352)
T COG3842 34 VTLLGPSGCG-KTTLLRMIAGFE 55 (352)
T ss_pred EEEECCCCCC-HHHHHHHHhCCC
Confidence 6799999999 999999998665
No 474
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=91.56 E-value=0.046 Score=41.08 Aligned_cols=22 Identities=5% Similarity=-0.102 Sum_probs=19.8
Q ss_pred eEEEEecccccceeeeeeeccCC
Q 028595 6 KLACLFATQVTSFLLYVLSVSGR 28 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~~ 28 (207)
.++++|.+++| ||||++.+.+-
T Consensus 31 ~~~i~G~nGsG-KSTLl~~l~Gl 52 (216)
T TIGR00960 31 MVFLVGHSGAG-KSTFLKLILGI 52 (216)
T ss_pred EEEEECCCCCC-HHHHHHHHhCC
Confidence 57899999999 99999999865
No 475
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=91.56 E-value=0.042 Score=40.47 Aligned_cols=22 Identities=27% Similarity=0.137 Sum_probs=19.3
Q ss_pred eEEEEecccccceeeeeeeccCC
Q 028595 6 KLACLFATQVTSFLLYVLSVSGR 28 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~~ 28 (207)
-++++|..++| ||||++.+.+-
T Consensus 20 ~~~i~G~nGsG-KSTLl~~i~G~ 41 (190)
T TIGR01166 20 VLALLGANGAG-KSTLLLHLNGL 41 (190)
T ss_pred EEEEECCCCCC-HHHHHHHHhCC
Confidence 47899999999 99999998765
No 476
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=91.47 E-value=0.037 Score=32.94 Aligned_cols=20 Identities=0% Similarity=-0.306 Sum_probs=16.5
Q ss_pred eEEEEecccccceeeeeeecc
Q 028595 6 KLACLFATQVTSFLLYVLSVS 26 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~ 26 (207)
-.++.|..++| ||||+..+.
T Consensus 25 ~tli~G~nGsG-KSTllDAi~ 44 (62)
T PF13555_consen 25 VTLITGPNGSG-KSTLLDAIQ 44 (62)
T ss_pred EEEEECCCCCC-HHHHHHHHH
Confidence 36788888998 999998764
No 477
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=91.45 E-value=0.22 Score=40.46 Aligned_cols=25 Identities=4% Similarity=-0.262 Sum_probs=21.9
Q ss_pred ceeEEEEecccccceeeeeeeccCCC
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRS 29 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~ 29 (207)
..+|++.|+.++| ||||++.+++.-
T Consensus 162 ~~nilI~G~tGSG-KTTll~aLl~~i 186 (344)
T PRK13851 162 RLTMLLCGPTGSG-KTTMSKTLISAI 186 (344)
T ss_pred CCeEEEECCCCcc-HHHHHHHHHccc
Confidence 4689999999999 999999998653
No 478
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.42 E-value=0.048 Score=41.16 Aligned_cols=22 Identities=5% Similarity=-0.174 Sum_probs=19.6
Q ss_pred eEEEEecccccceeeeeeeccCC
Q 028595 6 KLACLFATQVTSFLLYVLSVSGR 28 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~~ 28 (207)
.++++|..++| ||||++.+.+-
T Consensus 28 ~~~i~G~nGsG-KSTLl~~i~G~ 49 (220)
T cd03265 28 IFGLLGPNGAG-KTTTIKMLTTL 49 (220)
T ss_pred EEEEECCCCCC-HHHHHHHHhCC
Confidence 57899999999 99999998865
No 479
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=91.31 E-value=0.047 Score=38.42 Aligned_cols=23 Identities=4% Similarity=-0.012 Sum_probs=19.7
Q ss_pred eEEEEecccccceeeeeeeccCCC
Q 028595 6 KLACLFATQVTSFLLYVLSVSGRS 29 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~~~ 29 (207)
-++++|.+++| ||||++.+.+..
T Consensus 28 ~~~i~G~nGsG-KStLl~~l~G~~ 50 (144)
T cd03221 28 RIGLVGRNGAG-KSTLLKLIAGEL 50 (144)
T ss_pred EEEEECCCCCC-HHHHHHHHcCCC
Confidence 46899999999 999999997663
No 480
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.30 E-value=0.046 Score=41.69 Aligned_cols=22 Identities=14% Similarity=-0.046 Sum_probs=19.7
Q ss_pred eEEEEecccccceeeeeeeccCC
Q 028595 6 KLACLFATQVTSFLLYVLSVSGR 28 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~~ 28 (207)
.++++|..++| ||||++.+.+-
T Consensus 28 ~~~l~G~nGsG-KSTLl~~l~G~ 49 (235)
T cd03261 28 ILAIIGPSGSG-KSTLLRLIVGL 49 (235)
T ss_pred EEEEECCCCCC-HHHHHHHHhCC
Confidence 57899999999 99999999865
No 481
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.28 E-value=0.046 Score=40.93 Aligned_cols=22 Identities=5% Similarity=-0.201 Sum_probs=19.8
Q ss_pred eEEEEecccccceeeeeeeccCC
Q 028595 6 KLACLFATQVTSFLLYVLSVSGR 28 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~~ 28 (207)
.++++|.+++| ||||++.+.+-
T Consensus 27 ~~~i~G~nGsG-KSTLl~~l~Gl 48 (211)
T cd03264 27 MYGLLGPNGAG-KTTLMRILATL 48 (211)
T ss_pred cEEEECCCCCC-HHHHHHHHhCC
Confidence 67899999999 99999999765
No 482
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=91.25 E-value=0.052 Score=40.49 Aligned_cols=22 Identities=9% Similarity=-0.136 Sum_probs=19.6
Q ss_pred eEEEEecccccceeeeeeeccCC
Q 028595 6 KLACLFATQVTSFLLYVLSVSGR 28 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~~ 28 (207)
.++++|..++| ||||++.+.+-
T Consensus 28 ~~~i~G~nGsG-KSTLl~~l~Gl 49 (205)
T cd03226 28 IIALTGKNGAG-KTTLAKILAGL 49 (205)
T ss_pred EEEEECCCCCC-HHHHHHHHhcC
Confidence 57899999999 99999999765
No 483
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=91.23 E-value=0.05 Score=39.74 Aligned_cols=21 Identities=5% Similarity=-0.308 Sum_probs=18.4
Q ss_pred eeEEEEecccccceeeeeeecc
Q 028595 5 AKLACLFATQVTSFLLYVLSVS 26 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~ 26 (207)
-.++++|.+++| ||||++.+.
T Consensus 22 ~~~~l~G~nG~G-KSTLl~~il 42 (176)
T cd03238 22 VLVVVTGVSGSG-KSTLVNEGL 42 (176)
T ss_pred CEEEEECCCCCC-HHHHHHHHh
Confidence 368999999999 999999874
No 484
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.21 E-value=0.047 Score=40.85 Aligned_cols=22 Identities=9% Similarity=-0.097 Sum_probs=19.8
Q ss_pred eEEEEecccccceeeeeeeccCC
Q 028595 6 KLACLFATQVTSFLLYVLSVSGR 28 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~~ 28 (207)
.++++|..++| ||||++.+.+-
T Consensus 28 ~~~i~G~nGsG-KSTLl~~l~G~ 49 (210)
T cd03269 28 IFGLLGPNGAG-KTTTIRMILGI 49 (210)
T ss_pred EEEEECCCCCC-HHHHHHHHhCC
Confidence 47899999999 99999999875
No 485
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=91.20 E-value=0.1 Score=38.84 Aligned_cols=23 Identities=4% Similarity=-0.270 Sum_probs=19.1
Q ss_pred eEEEEecccccceeeeeeeccCCC
Q 028595 6 KLACLFATQVTSFLLYVLSVSGRS 29 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~~~ 29 (207)
-|++.|+.++| |||+++.+...-
T Consensus 3 lilI~GptGSG-KTTll~~ll~~~ 25 (198)
T cd01131 3 LVLVTGPTGSG-KSTTLAAMIDYI 25 (198)
T ss_pred EEEEECCCCCC-HHHHHHHHHHHh
Confidence 37899999999 999999876543
No 486
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=91.19 E-value=0.038 Score=40.96 Aligned_cols=21 Identities=0% Similarity=-0.200 Sum_probs=18.2
Q ss_pred EEEEecccccceeeeeeeccCC
Q 028595 7 LACLFATQVTSFLLYVLSVSGR 28 (207)
Q Consensus 7 i~iiG~~~~GgKssli~~l~~~ 28 (207)
|++.|++++| ||||.+.+.+.
T Consensus 2 igi~G~~GsG-KSTl~~~l~~~ 22 (198)
T cd02023 2 IGIAGGSGSG-KTTVAEEIIEQ 22 (198)
T ss_pred EEEECCCCCC-HHHHHHHHHHH
Confidence 6889999999 99999998653
No 487
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=91.16 E-value=0.047 Score=43.93 Aligned_cols=24 Identities=13% Similarity=-0.024 Sum_probs=21.0
Q ss_pred ceeEEEEecccccceeeeeeeccCC
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGR 28 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~ 28 (207)
..+|+++|.+++| ||||++.+...
T Consensus 162 ~~~~~~~G~~~~g-kstl~~~l~~~ 185 (325)
T TIGR01526 162 VKTVAILGGESTG-KSTLVNKLAAV 185 (325)
T ss_pred CcEEEEECCCCCC-HHHHHHHHHHh
Confidence 3589999999999 99999998754
No 488
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=91.15 E-value=0.049 Score=41.71 Aligned_cols=22 Identities=5% Similarity=-0.133 Sum_probs=19.6
Q ss_pred eEEEEecccccceeeeeeeccCC
Q 028595 6 KLACLFATQVTSFLLYVLSVSGR 28 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~~ 28 (207)
.++++|.+++| ||||++.+.+-
T Consensus 30 ~~~l~G~nGsG-KSTLl~~l~Gl 51 (243)
T TIGR02315 30 FVAIIGPSGAG-KSTLLRCINRL 51 (243)
T ss_pred EEEEECCCCCC-HHHHHHHHhCC
Confidence 57899999999 99999998765
No 489
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=91.15 E-value=0.053 Score=40.67 Aligned_cols=22 Identities=0% Similarity=-0.262 Sum_probs=19.8
Q ss_pred eEEEEecccccceeeeeeeccCC
Q 028595 6 KLACLFATQVTSFLLYVLSVSGR 28 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~~ 28 (207)
.++++|.+++| ||||++.+.+-
T Consensus 29 ~~~i~G~nGsG-KSTLl~~l~G~ 50 (214)
T cd03292 29 FVFLVGPSGAG-KSTLLKLIYKE 50 (214)
T ss_pred EEEEECCCCCC-HHHHHHHHhcC
Confidence 57899999999 99999999865
No 490
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=91.08 E-value=0.053 Score=39.76 Aligned_cols=23 Identities=13% Similarity=-0.035 Sum_probs=20.4
Q ss_pred eEEEEecccccceeeeeeeccCCC
Q 028595 6 KLACLFATQVTSFLLYVLSVSGRS 29 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~~~ 29 (207)
.+.++|.+++| ||||+|-+.+-.
T Consensus 27 ~vAi~GpSGaG-KSTLLnLIAGF~ 49 (231)
T COG3840 27 IVAILGPSGAG-KSTLLNLIAGFE 49 (231)
T ss_pred EEEEECCCCcc-HHHHHHHHHhcc
Confidence 68999999999 999999987654
No 491
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=91.08 E-value=0.052 Score=36.92 Aligned_cols=24 Identities=0% Similarity=-0.191 Sum_probs=20.8
Q ss_pred eeEEEEecccccceeeeeeeccCCC
Q 028595 5 AKLACLFATQVTSFLLYVLSVSGRS 29 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~~~ 29 (207)
..++++|++++| ||+++..+...-
T Consensus 3 ~~~~l~G~~G~G-KTtl~~~l~~~~ 26 (148)
T smart00382 3 EVILIVGPPGSG-KTTLARALAREL 26 (148)
T ss_pred CEEEEECCCCCc-HHHHHHHHHhcc
Confidence 468999999999 999999987654
No 492
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=91.07 E-value=0.043 Score=39.89 Aligned_cols=22 Identities=9% Similarity=-0.191 Sum_probs=18.7
Q ss_pred eEEEEecccccceeeeeeeccCC
Q 028595 6 KLACLFATQVTSFLLYVLSVSGR 28 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~~ 28 (207)
-+.++|.+++| ||||+.++...
T Consensus 8 ii~ivG~sgsG-KTTLi~~li~~ 29 (173)
T PRK10751 8 LLAIAAWSGTG-KTTLLKKLIPA 29 (173)
T ss_pred EEEEECCCCCh-HHHHHHHHHHH
Confidence 46889999999 99999998744
No 493
>PRK13949 shikimate kinase; Provisional
Probab=91.07 E-value=0.052 Score=39.33 Aligned_cols=22 Identities=5% Similarity=-0.185 Sum_probs=19.6
Q ss_pred eeEEEEecccccceeeeeeeccC
Q 028595 5 AKLACLFATQVTSFLLYVLSVSG 27 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~ 27 (207)
.+|+++|.+++| |||+.+.+..
T Consensus 2 ~~I~liG~~GsG-Kstl~~~La~ 23 (169)
T PRK13949 2 ARIFLVGYMGAG-KTTLGKALAR 23 (169)
T ss_pred cEEEEECCCCCC-HHHHHHHHHH
Confidence 489999999999 9999998764
No 494
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=91.05 E-value=0.05 Score=41.47 Aligned_cols=22 Identities=9% Similarity=-0.050 Sum_probs=19.9
Q ss_pred eEEEEecccccceeeeeeeccCC
Q 028595 6 KLACLFATQVTSFLLYVLSVSGR 28 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~~ 28 (207)
.++++|..++| ||||++.+.+-
T Consensus 37 ~~~l~G~nGsG-KSTLl~~l~Gl 58 (233)
T PRK11629 37 MMAIVGSSGSG-KSTLLHLLGGL 58 (233)
T ss_pred EEEEECCCCCC-HHHHHHHHhcC
Confidence 57899999999 99999999865
No 495
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=91.04 E-value=0.054 Score=40.09 Aligned_cols=23 Identities=9% Similarity=-0.221 Sum_probs=20.4
Q ss_pred eEEEEecccccceeeeeeeccCCC
Q 028595 6 KLACLFATQVTSFLLYVLSVSGRS 29 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~~~ 29 (207)
.++++|..++| ||||++.+.+-.
T Consensus 28 ~~~l~G~nGsG-KSTLl~~l~G~~ 50 (195)
T PRK13541 28 ITYIKGANGCG-KSSLLRMIAGIM 50 (195)
T ss_pred EEEEECCCCCC-HHHHHHHHhcCC
Confidence 57899999999 999999998764
No 496
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=91.02 E-value=0.052 Score=40.93 Aligned_cols=23 Identities=13% Similarity=-0.047 Sum_probs=19.8
Q ss_pred eEEEEecccccceeeeeeeccCCC
Q 028595 6 KLACLFATQVTSFLLYVLSVSGRS 29 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~~~ 29 (207)
.++++|.+++| ||||++.+.+-.
T Consensus 28 ~~~i~G~nGsG-KSTLl~~l~Gl~ 50 (222)
T cd03224 28 IVALLGRNGAG-KTTLLKTIMGLL 50 (222)
T ss_pred EEEEECCCCCC-HHHHHHHHhCCC
Confidence 57899999999 999999887653
No 497
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=91.00 E-value=0.052 Score=41.08 Aligned_cols=22 Identities=9% Similarity=-0.061 Sum_probs=19.8
Q ss_pred eEEEEecccccceeeeeeeccCC
Q 028595 6 KLACLFATQVTSFLLYVLSVSGR 28 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~~ 28 (207)
.++++|..++| ||||++.+.+-
T Consensus 33 ~~~i~G~nGsG-KSTLl~~l~G~ 54 (228)
T cd03257 33 TLGLVGESGSG-KSTLARAILGL 54 (228)
T ss_pred EEEEECCCCCC-HHHHHHHHhCC
Confidence 58999999999 99999999865
No 498
>PF05879 RHD3: Root hair defective 3 GTP-binding protein (RHD3); InterPro: IPR008803 This family consists of several eukaryotic root hair defective 3 like GTP-binding proteins. It has been speculated that the RHD3 protein is a member of a novel class of GTP-binding proteins that is widespread in eukaryotes and required for regulated cell enlargement []. The family also contains the homologous Saccharomyces cerevisiae synthetic construct enhancement of YOP1 (SEY1) protein which is involved in membrane trafficking [].; GO: 0016817 hydrolase activity, acting on acid anhydrides
Probab=90.99 E-value=0.11 Score=46.47 Aligned_cols=53 Identities=11% Similarity=-0.108 Sum_probs=31.4
Q ss_pred EecccccceeeeeeeccCCCCCccc-----cCceeeeeeeEEEECCeEEEEEEEeCCCC
Q 028595 10 LFATQVTSFLLYVLSVSGRSSIWDY-----IPTVFDNFSANVVAEGTTVNLGLWDTAGQ 63 (207)
Q Consensus 10 iG~~~~GgKssli~~l~~~~~~~~~-----~~t~~~~~~~~~~~~~~~~~l~i~D~~G~ 63 (207)
+|..++| ||||+|.+.+..|..-. .-|.|.............-.+.++|+-|.
T Consensus 1 ~g~qssg-kstlln~lf~t~f~~m~~~~r~qtt~gi~~~~~~~~~~~~~~~~v~d~eg~ 58 (742)
T PF05879_consen 1 FGSQSSG-KSTLLNHLFGTQFDVMDESGRQQTTKGIWMAKAKEVESSESNILVLDVEGT 58 (742)
T ss_pred CCCCCCc-HHHHHHHHHCCCccccccccccccchhhHHHhccccccCCCceEEEeCCCC
Confidence 4777777 99999999999875421 12333333222221122235678999763
No 499
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=90.98 E-value=0.058 Score=40.60 Aligned_cols=22 Identities=9% Similarity=-0.129 Sum_probs=19.6
Q ss_pred eEEEEecccccceeeeeeeccCC
Q 028595 6 KLACLFATQVTSFLLYVLSVSGR 28 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~~ 28 (207)
.++++|..++| ||||++.+.+-
T Consensus 33 ~~~i~G~nGsG-KSTLl~~l~Gl 54 (218)
T cd03266 33 VTGLLGPNGAG-KTTTLRMLAGL 54 (218)
T ss_pred EEEEECCCCCC-HHHHHHHHhCC
Confidence 57899999999 99999999764
No 500
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=90.98 E-value=0.051 Score=40.94 Aligned_cols=23 Identities=9% Similarity=-0.083 Sum_probs=20.2
Q ss_pred eEEEEecccccceeeeeeeccCCC
Q 028595 6 KLACLFATQVTSFLLYVLSVSGRS 29 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~~~ 29 (207)
.++++|.+++| ||||++.+.+-.
T Consensus 30 ~~~i~G~nGsG-KSTLl~~l~Gl~ 52 (220)
T cd03263 30 IFGLLGHNGAG-KTTTLKMLTGEL 52 (220)
T ss_pred EEEEECCCCCC-HHHHHHHHhCCC
Confidence 57899999999 999999998753
Done!