Query 028595
Match_columns 207
No_of_seqs 132 out of 1295
Neff 10.0
Searched_HMMs 29240
Date Mon Mar 25 23:27:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028595.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028595hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 100.0 4.5E-43 1.5E-47 263.6 13.3 162 4-178 13-176 (216)
2 2j0v_A RAC-like GTP-binding pr 100.0 1.1E-36 3.8E-41 228.1 15.8 191 3-196 8-202 (212)
3 3q3j_B RHO-related GTP-binding 100.0 1.3E-35 4.4E-40 223.0 15.7 179 3-182 26-207 (214)
4 3reg_A RHO-like small GTPase; 100.0 5.1E-35 1.7E-39 216.2 18.0 169 4-181 23-191 (194)
5 2bov_A RAla, RAS-related prote 100.0 2.1E-35 7.3E-40 219.8 15.8 162 4-178 14-177 (206)
6 4dsu_A GTPase KRAS, isoform 2B 100.0 2.4E-35 8.1E-40 216.5 14.8 180 3-196 3-189 (189)
7 2fu5_C RAS-related protein RAB 100.0 3.5E-35 1.2E-39 214.9 15.5 164 3-179 7-172 (183)
8 3oes_A GTPase rhebl1; small GT 100.0 2.7E-35 9.2E-40 219.0 14.0 176 4-196 24-201 (201)
9 3t5g_A GTP-binding protein RHE 100.0 1.2E-34 4.2E-39 211.6 17.1 166 4-182 6-173 (181)
10 2atx_A Small GTP binding prote 100.0 1.6E-34 5.4E-39 213.5 17.2 176 3-179 17-194 (194)
11 3c5c_A RAS-like protein 12; GD 100.0 1E-34 3.5E-39 213.7 15.4 162 3-178 20-186 (187)
12 1m7b_A RND3/RHOE small GTP-bin 100.0 1.1E-34 3.7E-39 212.8 15.4 175 3-178 6-183 (184)
13 2q3h_A RAS homolog gene family 100.0 1.5E-34 5.2E-39 214.7 16.4 176 3-179 19-196 (201)
14 1mh1_A RAC1; GTP-binding, GTPa 100.0 2.4E-34 8.3E-39 210.6 16.9 177 4-181 5-183 (186)
15 3bwd_D RAC-like GTP-binding pr 100.0 2E-35 6.9E-40 215.8 10.7 176 3-179 7-182 (182)
16 3tw8_B RAS-related protein RAB 100.0 2.6E-34 8.8E-39 209.5 16.1 167 2-181 7-174 (181)
17 2j1l_A RHO-related GTP-binding 100.0 2.9E-34 1E-38 215.5 16.0 177 3-180 33-211 (214)
18 2hup_A RAS-related protein RAB 100.0 1.7E-34 5.7E-39 214.9 13.5 166 2-179 27-194 (201)
19 1gwn_A RHO-related GTP-binding 100.0 3.1E-34 1.1E-38 214.1 14.7 175 3-178 27-204 (205)
20 2ew1_A RAS-related protein RAB 100.0 2.9E-34 1E-38 213.7 14.5 164 3-179 25-190 (201)
21 2bcg_Y Protein YP2, GTP-bindin 100.0 1.1E-33 3.7E-38 210.9 17.5 164 3-179 7-172 (206)
22 2gf0_A GTP-binding protein DI- 100.0 1.6E-34 5.4E-39 214.0 12.7 163 3-179 7-172 (199)
23 2gco_A H9, RHO-related GTP-bin 100.0 1.5E-33 5.2E-38 209.6 18.0 175 3-178 24-200 (201)
24 1z08_A RAS-related protein RAB 100.0 7.3E-34 2.5E-38 205.2 15.7 164 2-178 4-169 (170)
25 3kkq_A RAS-related protein M-R 100.0 5.3E-34 1.8E-38 208.6 14.9 162 4-178 18-182 (183)
26 1z2a_A RAS-related protein RAB 100.0 7.3E-34 2.5E-38 204.7 15.0 164 2-178 3-167 (168)
27 2gf9_A RAS-related protein RAB 100.0 2.2E-33 7.7E-38 206.6 17.9 164 2-178 20-185 (189)
28 2fv8_A H6, RHO-related GTP-bin 100.0 2.2E-33 7.5E-38 209.6 18.0 177 4-181 25-203 (207)
29 3ihw_A Centg3; RAS, centaurin, 100.0 9.3E-34 3.2E-38 208.1 15.2 161 4-180 20-182 (184)
30 3q72_A GTP-binding protein RAD 100.0 1.5E-33 5.2E-38 202.9 16.0 161 4-178 2-164 (166)
31 3tkl_A RAS-related protein RAB 100.0 1.1E-33 3.6E-38 209.1 15.5 166 3-181 15-182 (196)
32 1u8z_A RAS-related protein RAL 100.0 1E-33 3.5E-38 203.6 14.6 162 4-178 4-167 (168)
33 1c1y_A RAS-related protein RAP 100.0 1.1E-33 3.7E-38 203.6 14.7 162 4-177 3-166 (167)
34 2fg5_A RAB-22B, RAS-related pr 100.0 8E-34 2.7E-38 209.6 14.3 166 2-180 21-188 (192)
35 2efe_B Small GTP-binding prote 100.0 2E-33 6.9E-38 205.0 16.2 164 4-180 12-177 (181)
36 2bme_A RAB4A, RAS-related prot 100.0 7.4E-34 2.5E-38 208.3 14.0 165 2-179 8-174 (186)
37 4gzl_A RAS-related C3 botulinu 100.0 9.3E-34 3.2E-38 211.3 14.6 172 4-176 30-203 (204)
38 3cpj_B GTP-binding protein YPT 100.0 2.2E-33 7.4E-38 212.0 16.8 166 3-181 12-179 (223)
39 1z0f_A RAB14, member RAS oncog 100.0 1.6E-33 5.6E-38 204.8 15.6 164 2-178 13-178 (179)
40 2iwr_A Centaurin gamma 1; ANK 100.0 7.4E-34 2.5E-38 207.0 13.7 158 4-179 7-170 (178)
41 2fn4_A P23, RAS-related protei 100.0 1.7E-33 5.9E-38 205.1 15.6 164 4-180 9-174 (181)
42 3cbq_A GTP-binding protein REM 100.0 1.3E-33 4.4E-38 209.2 15.1 166 3-181 22-191 (195)
43 2a5j_A RAS-related protein RAB 100.0 2E-33 6.8E-38 207.2 16.1 163 3-178 20-184 (191)
44 2hxs_A RAB-26, RAS-related pro 100.0 7.3E-34 2.5E-38 206.8 13.4 166 2-180 4-175 (178)
45 1r2q_A RAS-related protein RAB 100.0 2E-33 6.9E-38 202.6 15.6 162 3-177 5-168 (170)
46 1z0j_A RAB-22, RAS-related pro 100.0 3.3E-33 1.1E-37 201.6 16.4 163 2-177 4-168 (170)
47 2g3y_A GTP-binding protein GEM 100.0 1.9E-33 6.6E-38 210.6 15.1 164 3-179 36-204 (211)
48 2o52_A RAS-related protein RAB 100.0 8.8E-34 3E-38 210.8 13.2 165 2-179 23-189 (200)
49 2g6b_A RAS-related protein RAB 100.0 6E-33 2.1E-37 202.3 17.3 166 2-180 8-176 (180)
50 3q85_A GTP-binding protein REM 100.0 2.3E-33 8E-38 202.5 14.9 163 4-179 2-168 (169)
51 1zbd_A Rabphilin-3A; G protein 100.0 4.4E-33 1.5E-37 207.1 16.6 164 2-178 6-171 (203)
52 1ek0_A Protein (GTP-binding pr 100.0 2.8E-33 9.6E-38 201.9 15.1 164 4-177 3-168 (170)
53 2nzj_A GTP-binding protein REM 100.0 2.5E-33 8.6E-38 203.3 14.6 163 2-178 2-169 (175)
54 1g16_A RAS-related protein SEC 100.0 2.6E-33 8.9E-38 202.2 13.8 163 3-179 2-166 (170)
55 2oil_A CATX-8, RAS-related pro 100.0 3.3E-33 1.1E-37 206.2 14.5 164 2-178 23-188 (193)
56 2il1_A RAB12; G-protein, GDP, 100.0 2.4E-33 8E-38 207.1 13.1 164 3-178 25-190 (192)
57 1kao_A RAP2A; GTP-binding prot 100.0 3.5E-33 1.2E-37 200.7 13.3 161 4-177 3-165 (167)
58 2a9k_A RAS-related protein RAL 100.0 6.4E-33 2.2E-37 203.0 14.8 162 4-178 18-181 (187)
59 3dz8_A RAS-related protein RAB 100.0 3.3E-34 1.1E-38 211.4 7.6 165 2-179 21-187 (191)
60 2atv_A RERG, RAS-like estrogen 100.0 3.3E-33 1.1E-37 206.9 13.0 161 4-178 28-191 (196)
61 2cjw_A GTP-binding protein GEM 100.0 4.5E-33 1.5E-37 205.8 13.5 164 4-180 6-174 (192)
62 1vg8_A RAS-related protein RAB 100.0 4.5E-33 1.6E-37 207.4 13.5 164 3-179 7-176 (207)
63 2p5s_A RAS and EF-hand domain 100.0 4.8E-33 1.6E-37 206.5 13.5 169 3-178 27-197 (199)
64 1x3s_A RAS-related protein RAB 100.0 2.1E-32 7E-37 201.9 16.3 163 4-180 15-180 (195)
65 2erx_A GTP-binding protein DI- 100.0 6E-33 2E-37 200.5 13.1 164 3-179 2-168 (172)
66 2y8e_A RAB-protein 6, GH09086P 100.0 1E-32 3.5E-37 200.6 14.4 162 4-178 14-177 (179)
67 1wms_A RAB-9, RAB9, RAS-relate 100.0 2.2E-32 7.5E-37 198.8 15.8 164 3-179 6-175 (177)
68 3bc1_A RAS-related protein RAB 100.0 6.8E-33 2.3E-37 204.1 12.7 164 3-179 10-186 (195)
69 2yc2_C IFT27, small RAB-relate 100.0 5.4E-33 1.9E-37 207.0 12.1 164 4-180 20-194 (208)
70 1z06_A RAS-related protein RAB 100.0 1.1E-32 3.9E-37 202.8 13.6 161 4-177 20-187 (189)
71 3con_A GTPase NRAS; structural 100.0 4.2E-32 1.4E-36 199.7 16.0 162 4-179 21-184 (190)
72 2f7s_A C25KG, RAS-related prot 100.0 2.7E-33 9.4E-38 210.3 9.7 165 2-179 23-200 (217)
73 2ce2_X GTPase HRAS; signaling 100.0 4.8E-32 1.6E-36 194.4 15.7 161 4-178 3-165 (166)
74 1ky3_A GTP-binding protein YPT 100.0 1.6E-32 5.4E-37 200.1 12.1 166 3-179 7-179 (182)
75 3l0i_B RAS-related protein RAB 100.0 1.6E-33 5.4E-38 209.1 6.7 163 3-178 32-196 (199)
76 3cph_A RAS-related protein SEC 100.0 1E-31 3.4E-36 201.0 15.6 162 3-178 19-182 (213)
77 3clv_A RAB5 protein, putative; 100.0 1.4E-31 4.9E-36 198.4 16.2 160 4-178 7-204 (208)
78 3gj0_A GTP-binding nuclear pro 100.0 2.4E-32 8.2E-37 205.9 10.2 164 3-181 14-178 (221)
79 4djt_A GTP-binding nuclear pro 100.0 1E-31 3.5E-36 201.9 13.6 166 3-181 10-178 (218)
80 2wkq_A NPH1-1, RAS-related C3 100.0 2.8E-31 9.4E-36 211.2 16.6 176 3-179 154-331 (332)
81 3t1o_A Gliding protein MGLA; G 100.0 2.1E-32 7.3E-37 202.0 8.4 162 3-179 13-193 (198)
82 3th5_A RAS-related C3 botulinu 99.9 1.6E-33 5.5E-38 209.8 0.0 172 4-176 30-203 (204)
83 4bas_A ADP-ribosylation factor 100.0 2.6E-31 8.8E-36 196.7 10.3 164 4-180 17-191 (199)
84 1f6b_A SAR1; gtpases, N-termin 100.0 3.1E-30 1.1E-34 191.3 13.6 154 4-175 25-196 (198)
85 1upt_A ARL1, ADP-ribosylation 100.0 3.3E-30 1.1E-34 186.1 12.6 165 1-179 4-170 (171)
86 1zj6_A ADP-ribosylation factor 100.0 5.4E-30 1.8E-34 188.1 13.3 160 3-181 15-181 (187)
87 1ksh_A ARF-like protein 2; sma 100.0 1.7E-29 5.7E-34 185.2 15.3 158 3-179 17-181 (186)
88 2h57_A ADP-ribosylation factor 100.0 1.4E-29 4.7E-34 186.4 14.9 158 3-178 20-187 (190)
89 1m2o_B GTP-binding protein SAR 100.0 1.1E-29 3.8E-34 187.2 14.4 154 4-175 23-189 (190)
90 1r8s_A ADP-ribosylation factor 100.0 3.3E-31 1.1E-35 190.2 5.9 155 5-178 1-162 (164)
91 2f9l_A RAB11B, member RAS onco 100.0 3.7E-29 1.3E-33 185.6 16.5 164 2-178 3-168 (199)
92 2zej_A Dardarin, leucine-rich 100.0 3.7E-31 1.3E-35 194.1 5.4 168 4-180 2-180 (184)
93 3llu_A RAS-related GTP-binding 100.0 5.6E-30 1.9E-34 189.6 10.7 165 3-177 19-196 (196)
94 1fzq_A ADP-ribosylation factor 100.0 7.6E-30 2.6E-34 186.6 11.2 157 3-178 15-178 (181)
95 2b6h_A ADP-ribosylation factor 100.0 3.3E-30 1.1E-34 190.3 9.3 156 4-178 29-191 (192)
96 2h17_A ADP-ribosylation factor 100.0 1.2E-29 4E-34 185.5 12.1 154 3-175 20-180 (181)
97 1zd9_A ADP-ribosylation factor 100.0 4.1E-30 1.4E-34 189.0 9.4 158 4-179 22-186 (188)
98 2x77_A ADP-ribosylation factor 100.0 1E-29 3.5E-34 186.8 10.9 158 3-179 21-185 (189)
99 1oix_A RAS-related protein RAB 100.0 1.4E-28 4.8E-33 181.5 16.5 161 3-176 28-190 (191)
100 1moz_A ARL1, ADP-ribosylation 100.0 9.6E-29 3.3E-33 180.5 13.4 157 3-178 17-180 (183)
101 3r7w_B Gtpase2, GTP-binding pr 100.0 2.3E-30 7.9E-35 203.4 4.2 169 6-185 1-181 (331)
102 3c5h_A Glucocorticoid receptor 100.0 3.6E-29 1.2E-33 192.7 7.3 160 3-177 18-254 (255)
103 2fh5_B SR-beta, signal recogni 100.0 1.3E-28 4.6E-33 184.3 9.7 162 3-175 6-213 (214)
104 2lkc_A Translation initiation 99.9 2.3E-27 7.7E-32 172.3 13.0 158 3-180 7-173 (178)
105 3r7w_A Gtpase1, GTP-binding pr 99.9 1E-27 3.4E-32 189.2 10.9 166 4-180 3-183 (307)
106 3o47_A ADP-ribosylation factor 99.9 7.1E-28 2.4E-32 191.7 9.2 158 4-179 165-328 (329)
107 2wji_A Ferrous iron transport 99.9 2.5E-27 8.6E-32 170.7 10.5 152 4-176 3-163 (165)
108 2qu8_A Putative nucleolar GTP- 99.9 7.8E-27 2.7E-31 176.6 10.4 164 3-181 28-208 (228)
109 3lvq_E ARF-GAP with SH3 domain 99.9 5E-26 1.7E-30 190.4 13.6 159 3-180 321-486 (497)
110 3dpu_A RAB family protein; roc 99.9 7.8E-27 2.7E-31 196.8 7.3 162 4-181 41-211 (535)
111 2cxx_A Probable GTP-binding pr 99.9 6.7E-27 2.3E-31 171.5 4.7 158 4-180 1-186 (190)
112 1svi_A GTP-binding protein YSX 99.9 1.2E-25 3.9E-30 165.8 9.9 157 4-177 23-194 (195)
113 2wjg_A FEOB, ferrous iron tran 99.9 7.4E-26 2.5E-30 165.9 8.8 156 4-180 7-171 (188)
114 2gj8_A MNME, tRNA modification 99.9 2.8E-26 9.7E-31 166.3 6.5 152 4-178 4-166 (172)
115 2dyk_A GTP-binding protein; GT 99.9 6.3E-26 2.1E-30 162.0 7.5 151 4-176 1-160 (161)
116 3a1s_A Iron(II) transport prot 99.9 4.6E-25 1.6E-29 169.8 10.2 153 4-177 5-166 (258)
117 3iev_A GTP-binding protein ERA 99.9 7E-25 2.4E-29 173.0 11.4 161 4-179 10-183 (308)
118 3pqc_A Probable GTP-binding pr 99.9 2.3E-25 7.9E-30 163.9 8.0 158 4-178 23-194 (195)
119 3iby_A Ferrous iron transport 99.9 1.4E-25 4.8E-30 172.5 6.2 150 5-175 2-164 (256)
120 3b1v_A Ferrous iron uptake tra 99.9 3.8E-25 1.3E-29 171.4 7.1 152 4-177 3-163 (272)
121 3i8s_A Ferrous iron transport 99.9 3.9E-25 1.3E-29 171.7 4.3 156 3-179 2-170 (274)
122 4dhe_A Probable GTP-binding pr 99.9 4.9E-24 1.7E-28 160.3 7.8 165 4-181 29-214 (223)
123 3k53_A Ferrous iron transport 99.9 7.8E-24 2.7E-28 164.2 9.0 156 4-179 3-167 (271)
124 1wf3_A GTP-binding protein; GT 99.9 4.4E-24 1.5E-28 167.7 7.3 156 4-178 7-173 (301)
125 3gee_A MNME, tRNA modification 99.9 4E-23 1.4E-27 171.1 12.4 155 4-177 233-397 (476)
126 4dcu_A GTP-binding protein ENG 99.9 1.1E-23 3.9E-28 174.3 6.5 158 4-178 195-369 (456)
127 3qq5_A Small GTP-binding prote 99.9 1.7E-23 5.7E-28 170.8 7.3 156 3-179 33-197 (423)
128 1nrj_B SR-beta, signal recogni 99.9 1.2E-24 4.1E-29 163.2 0.4 146 4-164 12-170 (218)
129 1mky_A Probable GTP-binding pr 99.9 7.4E-23 2.5E-27 168.7 10.7 178 5-204 2-191 (439)
130 2hjg_A GTP-binding protein ENG 99.9 1.5E-23 5.1E-28 172.7 6.4 158 4-178 175-349 (436)
131 1xzp_A Probable tRNA modificat 99.9 1.5E-22 5.3E-27 167.7 9.6 150 5-177 244-404 (482)
132 1lnz_A SPO0B-associated GTP-bi 99.9 7.7E-23 2.6E-27 162.9 6.5 161 4-181 158-333 (342)
133 1u0l_A Probable GTPase ENGC; p 99.9 7.9E-22 2.7E-26 155.0 11.2 135 19-174 31-169 (301)
134 2e87_A Hypothetical protein PH 99.9 2.1E-21 7.1E-26 156.1 13.3 158 4-178 167-336 (357)
135 3cb4_D GTP-binding protein LEP 99.9 1.1E-21 3.7E-26 166.3 10.3 164 1-181 1-185 (599)
136 2hjg_A GTP-binding protein ENG 99.8 1.7E-22 5.9E-27 166.4 2.5 154 5-179 4-166 (436)
137 1ega_A Protein (GTP-binding pr 99.8 2.2E-21 7.6E-26 152.4 8.5 157 4-178 8-175 (301)
138 2ywe_A GTP-binding protein LEP 99.8 3E-21 1E-25 163.4 8.8 164 1-181 3-187 (600)
139 3geh_A MNME, tRNA modification 99.8 1.9E-21 6.6E-26 160.5 6.4 153 4-180 224-386 (462)
140 3sjy_A Translation initiation 99.8 1.7E-20 6E-25 153.0 12.0 166 4-180 8-194 (403)
141 1mky_A Probable GTP-binding pr 99.8 2.5E-20 8.6E-25 153.6 12.4 158 4-178 180-355 (439)
142 2xtz_A Guanine nucleotide-bind 99.8 3.6E-21 1.2E-25 153.8 6.9 146 32-178 148-345 (354)
143 1cip_A Protein (guanine nucleo 99.8 1.9E-20 6.6E-25 149.6 10.6 129 45-179 187-345 (353)
144 3izy_P Translation initiation 99.8 1.6E-22 5.4E-27 169.1 -2.2 162 3-179 3-169 (537)
145 2ged_A SR-beta, signal recogni 99.8 3.6E-21 1.2E-25 141.4 4.1 113 4-126 48-173 (193)
146 2xtp_A GTPase IMAP family memb 99.8 1.2E-20 4E-25 145.3 7.1 161 4-178 22-208 (260)
147 1s0u_A EIF-2-gamma, translatio 99.8 5.5E-20 1.9E-24 150.2 11.0 162 4-180 8-200 (408)
148 2qag_A Septin-2, protein NEDD5 99.8 9E-22 3.1E-26 158.2 0.3 161 3-179 36-234 (361)
149 1wb1_A Translation elongation 99.8 4.1E-20 1.4E-24 153.7 8.9 156 4-177 19-188 (482)
150 3ohm_A Guanine nucleotide-bind 99.8 5.2E-20 1.8E-24 145.2 8.7 141 34-180 151-320 (327)
151 3tr5_A RF-3, peptide chain rel 99.8 2.8E-20 9.4E-25 155.9 7.5 117 3-124 12-149 (528)
152 2qtf_A Protein HFLX, GTP-bindi 99.8 1.8E-19 6.1E-24 144.8 11.9 160 7-180 182-356 (364)
153 1zcb_A G alpha I/13; GTP-bindi 99.8 1.9E-19 6.6E-24 144.3 10.9 129 45-178 195-353 (362)
154 1kk1_A EIF2gamma; initiation o 99.8 1.7E-19 5.8E-24 147.4 10.6 162 4-180 10-202 (410)
155 3lxx_A GTPase IMAP family memb 99.8 4.2E-20 1.4E-24 140.5 6.4 165 4-178 29-214 (239)
156 1azs_C GS-alpha; complex (lyas 99.8 3.6E-19 1.2E-23 143.9 11.7 130 46-179 212-386 (402)
157 1g7s_A Translation initiation 99.8 2E-19 7E-24 152.4 9.5 166 4-177 5-217 (594)
158 4dcu_A GTP-binding protein ENG 99.8 1.9E-20 6.4E-25 155.0 2.8 154 4-178 23-185 (456)
159 3p26_A Elongation factor 1 alp 99.8 2.6E-20 8.8E-25 155.2 3.5 156 4-167 33-227 (483)
160 3lxw_A GTPase IMAP family memb 99.8 2.2E-19 7.4E-24 137.3 8.3 167 4-178 21-208 (247)
161 3t5d_A Septin-7; GTP-binding p 99.8 3.5E-20 1.2E-24 143.8 3.8 160 3-177 7-203 (274)
162 2c78_A Elongation factor TU-A; 99.8 3.7E-20 1.3E-24 151.1 3.3 165 4-180 11-214 (405)
163 3j2k_7 ERF3, eukaryotic polype 99.8 5.1E-19 1.8E-23 145.6 9.6 157 4-170 17-217 (439)
164 1pui_A ENGB, probable GTP-bind 99.8 6.6E-19 2.2E-23 131.0 9.3 161 3-179 25-200 (210)
165 1zun_B Sulfate adenylate trans 99.8 2.3E-19 8E-24 147.6 6.0 155 4-168 24-214 (434)
166 2elf_A Protein translation elo 99.8 5.6E-19 1.9E-23 142.3 7.8 150 6-179 23-181 (370)
167 1d2e_A Elongation factor TU (E 99.8 1.8E-19 6.2E-24 146.7 4.7 165 4-180 3-197 (397)
168 1zo1_I IF2, translation initia 99.8 2E-20 6.8E-25 155.3 -1.3 156 3-175 3-164 (501)
169 4fid_A G protein alpha subunit 99.8 4.5E-19 1.5E-23 140.4 6.5 124 52-178 160-328 (340)
170 2aka_B Dynamin-1; fusion prote 99.8 1.5E-19 5.2E-24 141.6 2.5 159 4-176 26-251 (299)
171 1jny_A EF-1-alpha, elongation 99.7 3.9E-19 1.3E-23 146.3 3.8 157 4-170 6-205 (435)
172 3avx_A Elongation factor TS, e 99.7 6.1E-19 2.1E-23 156.6 4.0 165 4-180 296-488 (1289)
173 3izq_1 HBS1P, elongation facto 99.7 1.1E-18 3.8E-23 148.6 5.4 156 4-168 167-362 (611)
174 2dy1_A Elongation factor G; tr 99.7 4.8E-18 1.6E-22 146.2 8.5 115 3-122 8-139 (665)
175 2qnr_A Septin-2, protein NEDD5 99.7 4.9E-19 1.7E-23 139.0 0.9 163 3-180 17-216 (301)
176 1f60_A Elongation factor EEF1A 99.7 6.8E-18 2.3E-22 139.6 7.6 151 4-168 7-202 (458)
177 1r5b_A Eukaryotic peptide chai 99.7 1.5E-18 5.2E-23 143.8 3.1 153 4-169 43-243 (467)
178 3def_A T7I23.11 protein; chlor 99.7 1.9E-17 6.4E-22 127.6 7.7 117 4-124 36-166 (262)
179 1udx_A The GTP-binding protein 99.7 9.1E-17 3.1E-21 130.8 11.6 160 5-181 158-328 (416)
180 2h5e_A Peptide chain release f 99.7 3.7E-17 1.3E-21 137.1 9.5 117 3-124 12-149 (529)
181 2qag_C Septin-7; cell cycle, c 99.7 1.7E-17 5.8E-22 135.2 6.1 160 3-177 30-226 (418)
182 3mca_A HBS1, elongation factor 99.7 3E-18 1E-22 145.5 1.7 148 4-166 177-371 (592)
183 2j69_A Bacterial dynamin-like 99.7 4.6E-17 1.6E-21 140.7 7.2 172 4-179 69-326 (695)
184 1dar_A EF-G, elongation factor 99.7 8.2E-17 2.8E-21 139.1 8.6 115 2-124 10-144 (691)
185 3t34_A Dynamin-related protein 99.7 7.7E-18 2.6E-22 135.5 0.7 154 4-172 34-255 (360)
186 1h65_A Chloroplast outer envel 99.7 9.7E-17 3.3E-21 124.1 6.1 118 4-125 39-170 (270)
187 1jwy_B Dynamin A GTPase domain 99.7 6.5E-17 2.2E-21 127.6 5.0 114 53-180 131-264 (315)
188 2rdo_7 EF-G, elongation factor 99.7 1E-15 3.5E-20 132.4 12.7 117 2-124 8-149 (704)
189 2xex_A Elongation factor G; GT 99.6 6E-16 2E-20 133.8 9.6 115 2-124 8-142 (693)
190 1wxq_A GTP-binding protein; st 99.6 2.7E-16 9.2E-21 127.6 5.6 84 5-89 1-114 (397)
191 2hf9_A Probable hydrogenase ni 99.6 4.6E-17 1.6E-21 122.5 -1.5 152 4-177 38-223 (226)
192 2wsm_A Hydrogenase expression/ 99.6 8.3E-16 2.8E-20 115.1 5.2 154 4-179 30-215 (221)
193 2yv5_A YJEQ protein; hydrolase 99.6 4E-14 1.4E-18 111.0 14.9 132 23-173 31-164 (302)
194 2x2e_A Dynamin-1; nitration, h 99.6 2.3E-17 8E-22 132.3 -3.8 157 4-174 31-254 (353)
195 1jal_A YCHF protein; nucleotid 99.5 8.5E-14 2.9E-18 111.2 12.0 82 5-88 3-108 (363)
196 1n0u_A EF-2, elongation factor 99.5 7.4E-15 2.5E-19 129.3 5.6 116 3-123 18-164 (842)
197 2qpt_A EH domain-containing pr 99.5 2.2E-14 7.4E-19 121.0 4.4 118 4-125 65-234 (550)
198 3p32_A Probable GTPase RV1496/ 99.4 1.1E-14 3.8E-19 116.7 1.3 107 53-178 172-284 (355)
199 2dby_A GTP-binding protein; GD 99.4 1.2E-13 4.2E-18 110.8 6.4 147 5-169 2-253 (368)
200 3vqt_A RF-3, peptide chain rel 99.4 7.2E-13 2.4E-17 111.7 8.4 116 3-123 30-166 (548)
201 2www_A Methylmalonic aciduria 99.4 3.6E-14 1.2E-18 113.5 0.0 103 53-177 167-278 (349)
202 3l82_B F-box only protein 4; T 99.4 4.2E-13 1.4E-17 98.3 5.1 107 60-179 109-224 (227)
203 1yrb_A ATP(GTP)binding protein 99.4 8.2E-13 2.8E-17 101.3 6.5 120 53-177 109-256 (262)
204 2p67_A LAO/AO transport system 99.3 4.7E-13 1.6E-17 106.7 1.4 106 53-177 149-260 (341)
205 3zvr_A Dynamin-1; hydrolase, D 99.3 9E-13 3.1E-17 114.0 2.9 157 4-175 51-275 (772)
206 3l2o_B F-box only protein 4; s 99.3 3.3E-12 1.1E-16 98.0 4.4 107 60-179 194-309 (312)
207 4a9a_A Ribosome-interacting GT 99.2 2.8E-11 9.7E-16 97.1 9.6 139 5-151 73-222 (376)
208 4fn5_A EF-G 1, elongation fact 99.2 5.1E-11 1.7E-15 103.5 10.2 117 2-123 11-151 (709)
209 3j25_A Tetracycline resistance 99.2 3.2E-12 1.1E-16 109.6 1.6 115 4-123 2-133 (638)
210 2ohf_A Protein OLA1, GTP-bindi 99.1 2.2E-11 7.4E-16 98.2 1.5 88 4-92 22-132 (396)
211 3h2y_A GTPase family protein; 99.1 2.7E-10 9.4E-15 91.6 7.1 98 62-176 55-158 (368)
212 2qm8_A GTPase/ATPase; G protei 99.0 1.3E-10 4.4E-15 92.4 3.3 104 53-177 148-260 (337)
213 3ec1_A YQEH GTPase; atnos1, at 98.9 1.1E-09 3.7E-14 88.1 5.2 99 61-176 56-160 (369)
214 1ni3_A YCHF GTPase, YCHF GTP-b 98.9 9.3E-09 3.2E-13 83.0 9.6 84 4-88 20-127 (392)
215 1puj_A YLQF, conserved hypothe 98.9 1.8E-09 6.3E-14 83.7 4.7 101 57-177 3-105 (282)
216 1t9h_A YLOQ, probable GTPase E 98.5 1.4E-07 4.8E-12 73.8 5.4 96 65-171 75-170 (307)
217 3ec1_A YQEH GTPase; atnos1, at 98.4 5.3E-09 1.8E-13 84.1 -4.9 136 5-162 163-315 (369)
218 3h2y_A GTPase family protein; 98.4 3.5E-09 1.2E-13 85.1 -6.5 135 5-159 161-311 (368)
219 1tq4_A IIGP1, interferon-induc 98.3 1.2E-06 4.3E-11 71.1 7.9 164 5-180 70-255 (413)
220 2qag_B Septin-6, protein NEDD5 98.3 3.9E-06 1.3E-10 68.3 9.7 115 5-125 43-192 (427)
221 2j37_W Signal recognition part 98.2 1.8E-07 6.3E-12 77.8 0.8 149 4-175 101-310 (504)
222 3sop_A Neuronal-specific septi 98.1 5E-06 1.7E-10 63.9 7.1 115 4-125 2-156 (270)
223 3cnl_A YLQF, putative uncharac 98.1 1.2E-06 4.2E-11 67.0 2.8 93 60-174 4-97 (262)
224 3cnl_A YLQF, putative uncharac 98.0 9.3E-07 3.2E-11 67.7 0.2 56 5-65 100-156 (262)
225 1puj_A YLQF, conserved hypothe 98.0 1.9E-06 6.4E-11 66.7 1.7 56 4-64 120-176 (282)
226 2rcn_A Probable GTPase ENGC; Y 97.9 5.3E-05 1.8E-09 60.4 9.4 87 72-171 126-212 (358)
227 1f5n_A Interferon-induced guan 97.6 1.6E-05 5.6E-10 67.3 2.0 61 4-65 38-103 (592)
228 3dm5_A SRP54, signal recogniti 97.5 8.6E-05 2.9E-09 60.7 4.0 86 53-159 183-274 (443)
229 2v3c_C SRP54, signal recogniti 97.3 2.4E-05 8.2E-10 64.0 -0.6 64 52-122 180-251 (432)
230 3szr_A Interferon-induced GTP- 96.9 0.00017 5.7E-09 61.7 0.3 23 6-29 47-69 (608)
231 1bif_A 6-phosphofructo-2-kinas 96.9 8E-06 2.7E-10 67.7 -7.9 107 4-116 39-156 (469)
232 1j8m_F SRP54, signal recogniti 96.8 0.00071 2.4E-08 52.5 3.4 92 52-167 180-280 (297)
233 3kl4_A SRP54, signal recogniti 96.5 0.00029 9.8E-09 57.6 -0.7 91 52-165 179-277 (433)
234 3q5d_A Atlastin-1; G protein, 96.3 0.0011 3.9E-08 54.3 1.5 22 5-27 68-89 (447)
235 1lvg_A Guanylate kinase, GMP k 95.0 0.0023 7.7E-08 46.5 -1.3 26 1-27 1-26 (198)
236 1ye8_A Protein THEP1, hypothet 94.4 0.0045 1.5E-07 44.2 -1.1 22 6-28 2-23 (178)
237 1kag_A SKI, shikimate kinase I 94.2 0.0061 2.1E-07 42.8 -0.7 27 1-28 1-27 (173)
238 4dzz_A Plasmid partitioning pr 94.0 0.043 1.5E-06 39.4 3.5 65 53-122 76-143 (206)
239 1via_A Shikimate kinase; struc 93.9 0.0071 2.4E-07 42.7 -0.8 26 1-27 1-26 (175)
240 1kgd_A CASK, peripheral plasma 93.9 0.0059 2E-07 43.5 -1.3 22 6-28 7-28 (180)
241 3tr0_A Guanylate kinase, GMP k 93.8 0.0076 2.6E-07 43.5 -0.8 24 4-28 7-30 (205)
242 1cke_A CK, MSSA, protein (cyti 93.6 0.011 3.9E-07 43.4 -0.3 26 1-27 2-27 (227)
243 1s96_A Guanylate kinase, GMP k 93.5 0.0088 3E-07 44.2 -0.9 27 1-28 13-39 (219)
244 2qor_A Guanylate kinase; phosp 93.5 0.011 3.7E-07 42.9 -0.5 26 1-27 9-34 (204)
245 3a00_A Guanylate kinase, GMP k 93.5 0.0077 2.6E-07 43.1 -1.3 21 7-28 4-24 (186)
246 1znw_A Guanylate kinase, GMP k 93.2 0.0093 3.2E-07 43.4 -1.3 22 6-28 22-43 (207)
247 1t9h_A YLOQ, probable GTPase E 93.2 0.0084 2.9E-07 46.7 -1.6 23 6-29 175-197 (307)
248 2v54_A DTMP kinase, thymidylat 93.1 0.016 5.3E-07 41.8 -0.2 27 1-28 1-27 (204)
249 4gp7_A Metallophosphoesterase; 93.1 0.012 4.1E-07 41.5 -0.8 21 6-27 11-31 (171)
250 2rcn_A Probable GTPase ENGC; Y 93.0 0.013 4.5E-07 46.6 -0.7 23 6-29 217-239 (358)
251 1zp6_A Hypothetical protein AT 93.0 0.018 6.2E-07 41.0 0.1 23 5-28 10-32 (191)
252 1z6g_A Guanylate kinase; struc 92.9 0.011 3.7E-07 43.6 -1.3 23 5-28 24-46 (218)
253 3lnc_A Guanylate kinase, GMP k 92.9 0.018 6.1E-07 42.6 -0.1 22 6-28 29-51 (231)
254 3tif_A Uncharacterized ABC tra 92.9 0.015 5E-07 43.5 -0.6 22 6-28 33-54 (235)
255 2xxa_A Signal recognition part 92.9 0.029 9.9E-07 45.8 1.1 64 52-122 183-253 (433)
256 3c8u_A Fructokinase; YP_612366 92.8 0.013 4.4E-07 42.7 -1.0 23 5-28 23-45 (208)
257 2pcj_A ABC transporter, lipopr 92.8 0.016 5.5E-07 42.9 -0.5 22 6-28 32-53 (224)
258 3cm0_A Adenylate kinase; ATP-b 92.7 0.018 6.2E-07 40.8 -0.3 26 1-27 1-26 (186)
259 3kb2_A SPBC2 prophage-derived 92.7 0.017 5.8E-07 40.3 -0.5 22 5-27 2-23 (173)
260 3cwq_A Para family chromosome 92.6 0.42 1.4E-05 34.6 6.9 67 52-123 67-134 (209)
261 3ney_A 55 kDa erythrocyte memb 92.6 0.015 5.3E-07 42.2 -0.8 23 5-28 20-42 (197)
262 1np6_A Molybdopterin-guanine d 92.6 0.018 6.2E-07 40.9 -0.5 26 2-28 4-29 (174)
263 2rhm_A Putative kinase; P-loop 92.5 0.023 8E-07 40.4 0.0 26 1-27 2-27 (193)
264 1vht_A Dephospho-COA kinase; s 92.4 0.022 7.5E-07 41.6 -0.2 26 1-27 1-26 (218)
265 3vaa_A Shikimate kinase, SK; s 92.4 0.02 6.8E-07 41.3 -0.5 25 2-27 23-47 (199)
266 1b0u_A Histidine permease; ABC 92.4 0.019 6.5E-07 43.6 -0.6 22 6-28 34-55 (262)
267 1u0l_A Probable GTPase ENGC; p 92.4 0.019 6.5E-07 44.5 -0.6 23 6-29 171-193 (301)
268 2onk_A Molybdate/tungstate ABC 92.3 0.018 6.3E-07 43.1 -0.7 22 6-28 26-47 (240)
269 1sgw_A Putative ABC transporte 92.3 0.019 6.6E-07 42.2 -0.6 22 6-28 37-58 (214)
270 2cbz_A Multidrug resistance-as 92.3 0.02 6.8E-07 42.8 -0.6 22 6-28 33-54 (237)
271 1jjv_A Dephospho-COA kinase; P 92.3 0.024 8.1E-07 41.0 -0.2 22 5-27 3-24 (206)
272 1htw_A HI0065; nucleotide-bind 92.3 0.014 4.9E-07 40.7 -1.3 23 6-29 35-57 (158)
273 1g6h_A High-affinity branched- 92.2 0.021 7E-07 43.2 -0.6 23 6-29 35-57 (257)
274 2if2_A Dephospho-COA kinase; a 92.2 0.023 7.8E-07 41.0 -0.4 22 5-27 2-23 (204)
275 3asz_A Uridine kinase; cytidin 92.1 0.016 5.5E-07 42.1 -1.2 24 4-28 6-29 (211)
276 3gfo_A Cobalt import ATP-bindi 92.1 0.021 7.2E-07 43.7 -0.6 22 6-28 36-57 (275)
277 4ido_A Atlastin-1; GTPase, GTP 92.0 0.11 3.6E-06 42.7 3.3 59 6-65 69-152 (457)
278 1ex7_A Guanylate kinase; subst 92.0 0.02 6.8E-07 41.2 -0.8 22 6-28 3-24 (186)
279 4g1u_C Hemin import ATP-bindin 92.0 0.023 7.8E-07 43.3 -0.6 22 6-28 39-60 (266)
280 1mv5_A LMRA, multidrug resista 92.0 0.025 8.4E-07 42.4 -0.4 22 6-28 30-51 (243)
281 2olj_A Amino acid ABC transpor 92.0 0.023 7.8E-07 43.2 -0.6 22 6-28 52-73 (263)
282 2j41_A Guanylate kinase; GMP, 92.0 0.017 5.8E-07 41.7 -1.3 23 5-28 7-29 (207)
283 2ff7_A Alpha-hemolysin translo 91.9 0.025 8.6E-07 42.5 -0.4 22 6-28 37-58 (247)
284 1ji0_A ABC transporter; ATP bi 91.9 0.023 7.9E-07 42.5 -0.6 22 6-28 34-55 (240)
285 1vpl_A ABC transporter, ATP-bi 91.9 0.023 8E-07 43.0 -0.6 22 6-28 43-64 (256)
286 3tau_A Guanylate kinase, GMP k 91.9 0.027 9.3E-07 41.0 -0.2 23 5-28 9-31 (208)
287 2qi9_C Vitamin B12 import ATP- 91.8 0.024 8.3E-07 42.7 -0.6 22 6-28 28-49 (249)
288 3tlx_A Adenylate kinase 2; str 91.8 0.03 1E-06 41.9 -0.1 26 1-27 26-51 (243)
289 1nks_A Adenylate kinase; therm 91.8 0.028 9.5E-07 39.9 -0.3 22 5-27 2-23 (194)
290 2pze_A Cystic fibrosis transme 91.8 0.024 8.3E-07 42.1 -0.6 22 6-28 36-57 (229)
291 3a4m_A L-seryl-tRNA(SEC) kinas 91.7 0.028 9.6E-07 42.5 -0.3 26 1-27 1-26 (260)
292 2ixe_A Antigen peptide transpo 91.7 0.025 8.7E-07 43.1 -0.6 22 6-28 47-68 (271)
293 2wwf_A Thymidilate kinase, put 91.6 0.032 1.1E-06 40.3 -0.0 23 4-27 10-32 (212)
294 2ghi_A Transport protein; mult 91.6 0.026 8.9E-07 42.8 -0.6 22 6-28 48-69 (260)
295 2ihy_A ABC transporter, ATP-bi 91.6 0.026 9E-07 43.3 -0.6 22 6-28 49-70 (279)
296 3b85_A Phosphate starvation-in 91.6 0.021 7.3E-07 41.8 -1.1 22 6-28 24-45 (208)
297 3trf_A Shikimate kinase, SK; a 91.5 0.028 9.7E-07 39.8 -0.5 22 4-26 5-26 (185)
298 2zu0_C Probable ATP-dependent 91.5 0.026 8.9E-07 43.0 -0.7 22 6-28 48-69 (267)
299 1nn5_A Similar to deoxythymidy 91.5 0.032 1.1E-06 40.4 -0.2 24 3-27 8-31 (215)
300 2bbw_A Adenylate kinase 4, AK4 91.5 0.028 9.7E-07 41.9 -0.5 21 5-26 28-48 (246)
301 2d2e_A SUFC protein; ABC-ATPas 91.5 0.026 9E-07 42.5 -0.7 22 6-28 31-52 (250)
302 2i3b_A HCR-ntpase, human cance 91.4 0.02 6.7E-07 41.3 -1.4 22 6-28 3-24 (189)
303 2nq2_C Hypothetical ABC transp 91.4 0.028 9.7E-07 42.4 -0.6 22 6-28 33-54 (253)
304 2c95_A Adenylate kinase 1; tra 91.4 0.026 8.7E-07 40.3 -0.8 24 3-27 8-31 (196)
305 2yz2_A Putative ABC transporte 91.4 0.029 9.8E-07 42.7 -0.6 22 6-28 35-56 (266)
306 1zd8_A GTP:AMP phosphotransfer 91.3 0.032 1.1E-06 41.1 -0.4 22 4-26 7-28 (227)
307 2yv5_A YJEQ protein; hydrolase 91.2 0.028 9.4E-07 43.6 -0.8 20 6-26 167-186 (302)
308 3end_A Light-independent proto 91.2 1.7 5.6E-05 33.3 9.3 66 52-120 156-224 (307)
309 2vp4_A Deoxynucleoside kinase; 91.2 0.034 1.2E-06 41.1 -0.3 23 5-28 21-43 (230)
310 4eun_A Thermoresistant glucoki 91.1 0.024 8.1E-07 40.9 -1.3 22 5-27 30-51 (200)
311 3fb4_A Adenylate kinase; psych 91.0 0.033 1.1E-06 40.6 -0.5 20 6-26 2-21 (216)
312 3lw7_A Adenylate kinase relate 91.0 0.03 1E-06 38.9 -0.7 19 6-25 3-21 (179)
313 1lw7_A Transcriptional regulat 90.9 0.025 8.6E-07 45.0 -1.4 24 4-28 170-193 (365)
314 2jaq_A Deoxyguanosine kinase; 90.9 0.034 1.2E-06 39.8 -0.5 21 6-27 2-22 (205)
315 2pjz_A Hypothetical protein ST 90.9 0.037 1.3E-06 42.0 -0.4 22 6-28 32-53 (263)
316 1nij_A Hypothetical protein YJ 90.8 0.037 1.3E-06 43.2 -0.4 27 1-28 1-27 (318)
317 3dl0_A Adenylate kinase; phosp 90.8 0.036 1.2E-06 40.4 -0.5 21 6-27 2-22 (216)
318 2bdt_A BH3686; alpha-beta prot 90.7 0.033 1.1E-06 39.6 -0.7 21 6-27 4-24 (189)
319 3fvq_A Fe(3+) IONS import ATP- 90.7 0.036 1.2E-06 44.1 -0.6 23 6-29 32-54 (359)
320 3t61_A Gluconokinase; PSI-biol 90.6 0.035 1.2E-06 40.0 -0.7 22 5-27 19-40 (202)
321 3aez_A Pantothenate kinase; tr 90.5 0.029 1E-06 43.7 -1.3 22 5-27 91-112 (312)
322 2bbs_A Cystic fibrosis transme 90.5 0.044 1.5E-06 42.3 -0.3 22 6-28 66-87 (290)
323 2v9p_A Replication protein E1; 90.4 0.033 1.1E-06 43.3 -1.0 22 5-27 127-148 (305)
324 1ly1_A Polynucleotide kinase; 90.4 0.037 1.3E-06 38.8 -0.7 22 5-27 3-24 (181)
325 2f1r_A Molybdopterin-guanine d 90.4 0.025 8.4E-07 40.1 -1.7 23 5-28 3-25 (171)
326 1gtv_A TMK, thymidylate kinase 90.2 0.031 1E-06 40.5 -1.4 21 6-27 2-22 (214)
327 1knq_A Gluconate kinase; ALFA/ 90.2 0.04 1.4E-06 38.7 -0.7 22 5-27 9-30 (175)
328 2ehv_A Hypothetical protein PH 90.2 0.039 1.3E-06 40.9 -0.8 20 6-26 32-51 (251)
329 3nh6_A ATP-binding cassette SU 90.2 0.038 1.3E-06 42.9 -0.9 23 5-28 81-103 (306)
330 1z47_A CYSA, putative ABC-tran 90.1 0.042 1.4E-06 43.6 -0.7 23 6-29 43-65 (355)
331 3iij_A Coilin-interacting nucl 90.1 0.046 1.6E-06 38.6 -0.5 22 4-26 11-32 (180)
332 4a74_A DNA repair and recombin 90.1 0.034 1.2E-06 40.7 -1.2 22 6-28 27-48 (231)
333 1qf9_A UMP/CMP kinase, protein 90.1 0.055 1.9E-06 38.3 -0.1 22 5-27 7-28 (194)
334 2eyu_A Twitching motility prot 90.1 0.033 1.1E-06 42.2 -1.3 23 5-28 26-48 (261)
335 2jeo_A Uridine-cytidine kinase 90.0 0.034 1.2E-06 41.6 -1.3 22 5-27 26-47 (245)
336 2qt1_A Nicotinamide riboside k 90.0 0.059 2E-06 39.0 0.0 24 4-28 21-44 (207)
337 2bwj_A Adenylate kinase 5; pho 90.0 0.033 1.1E-06 39.8 -1.3 23 4-27 12-34 (199)
338 2yyz_A Sugar ABC transporter, 89.9 0.045 1.5E-06 43.5 -0.7 23 6-29 31-53 (359)
339 2it1_A 362AA long hypothetical 89.9 0.045 1.5E-06 43.6 -0.7 23 6-29 31-53 (362)
340 1sxj_E Activator 1 40 kDa subu 89.8 0.098 3.3E-06 41.0 1.2 20 7-27 39-58 (354)
341 2plr_A DTMP kinase, probable t 89.7 0.057 1.9E-06 38.9 -0.2 22 5-27 5-26 (213)
342 1g29_1 MALK, maltose transport 89.7 0.048 1.6E-06 43.6 -0.7 23 6-29 31-53 (372)
343 3rlf_A Maltose/maltodextrin im 89.7 0.048 1.6E-06 43.7 -0.7 23 6-29 31-53 (381)
344 1e4v_A Adenylate kinase; trans 89.6 0.053 1.8E-06 39.5 -0.4 21 6-27 2-22 (214)
345 1v43_A Sugar-binding transport 89.6 0.049 1.7E-06 43.6 -0.7 23 6-29 39-61 (372)
346 2z0h_A DTMP kinase, thymidylat 89.6 0.048 1.6E-06 38.9 -0.7 21 6-27 2-22 (197)
347 3d31_A Sulfate/molybdate ABC t 89.5 0.042 1.4E-06 43.5 -1.2 23 6-29 28-50 (348)
348 3k9g_A PF-32 protein; ssgcid, 89.5 0.53 1.8E-05 35.3 5.1 65 52-120 144-208 (267)
349 3tui_C Methionine import ATP-b 89.4 0.051 1.8E-06 43.3 -0.7 23 6-29 56-78 (366)
350 3ea0_A ATPase, para family; al 89.4 1.8 6.2E-05 31.6 7.9 67 52-122 118-185 (245)
351 1kht_A Adenylate kinase; phosp 89.4 0.056 1.9E-06 38.2 -0.5 22 5-27 4-25 (192)
352 1y63_A LMAJ004144AAA protein; 89.4 0.065 2.2E-06 38.1 -0.2 24 4-28 10-33 (184)
353 1sq5_A Pantothenate kinase; P- 89.2 0.045 1.5E-06 42.5 -1.2 22 5-27 81-102 (308)
354 2pt7_A CAG-ALFA; ATPase, prote 89.1 0.065 2.2E-06 42.1 -0.3 23 5-28 172-194 (330)
355 1oxx_K GLCV, glucose, ABC tran 89.1 0.042 1.4E-06 43.6 -1.4 23 6-29 33-55 (353)
356 2kjq_A DNAA-related protein; s 89.0 0.05 1.7E-06 37.5 -0.9 22 6-28 38-59 (149)
357 3ec2_A DNA replication protein 89.0 0.037 1.3E-06 39.1 -1.7 23 5-28 39-61 (180)
358 1qhx_A CPT, protein (chloramph 89.0 0.056 1.9E-06 37.9 -0.7 21 6-27 5-25 (178)
359 2vli_A Antibiotic resistance p 88.9 0.074 2.5E-06 37.4 -0.1 22 4-26 5-26 (183)
360 1zcb_A G alpha I/13; GTP-bindi 88.9 0.072 2.5E-06 42.4 -0.2 22 3-25 32-53 (362)
361 1rz3_A Hypothetical protein rb 88.8 0.079 2.7E-06 38.2 -0.0 23 4-27 22-44 (201)
362 3gd7_A Fusion complex of cysti 88.8 0.064 2.2E-06 43.2 -0.6 22 6-28 49-70 (390)
363 2pbr_A DTMP kinase, thymidylat 88.7 0.059 2E-06 38.2 -0.7 21 6-27 2-22 (195)
364 3uie_A Adenylyl-sulfate kinase 88.6 0.061 2.1E-06 38.7 -0.7 22 5-27 26-47 (200)
365 2gza_A Type IV secretion syste 88.6 0.067 2.3E-06 42.5 -0.6 23 5-28 176-198 (361)
366 2obl_A ESCN; ATPase, hydrolase 88.5 0.058 2E-06 42.7 -1.0 24 5-29 72-95 (347)
367 2chg_A Replication factor C sm 88.5 0.044 1.5E-06 39.5 -1.6 21 6-27 40-60 (226)
368 1e6c_A Shikimate kinase; phosp 88.4 0.067 2.3E-06 37.3 -0.6 22 5-27 3-24 (173)
369 1ak2_A Adenylate kinase isoenz 88.4 0.078 2.7E-06 39.2 -0.3 23 4-27 16-38 (233)
370 2pt5_A Shikimate kinase, SK; a 88.4 0.069 2.4E-06 37.0 -0.6 21 6-27 2-22 (168)
371 1tev_A UMP-CMP kinase; ploop, 88.3 0.077 2.6E-06 37.6 -0.4 22 5-27 4-25 (196)
372 4e22_A Cytidylate kinase; P-lo 88.3 0.084 2.9E-06 39.6 -0.2 21 5-26 28-48 (252)
373 1aky_A Adenylate kinase; ATP:A 88.3 0.075 2.6E-06 38.8 -0.5 23 4-27 4-26 (220)
374 1ukz_A Uridylate kinase; trans 88.3 0.079 2.7E-06 38.1 -0.4 22 4-26 15-36 (203)
375 4eaq_A DTMP kinase, thymidylat 88.0 0.095 3.3E-06 38.8 -0.1 24 3-27 25-48 (229)
376 1zak_A Adenylate kinase; ATP:A 87.9 0.076 2.6E-06 38.9 -0.6 23 4-27 5-27 (222)
377 1rj9_A FTSY, signal recognitio 87.9 0.06 2E-06 41.8 -1.3 21 5-26 103-123 (304)
378 2cdn_A Adenylate kinase; phosp 87.8 0.082 2.8E-06 38.0 -0.5 22 5-27 21-42 (201)
379 3jvv_A Twitching mobility prot 87.7 0.062 2.1E-06 42.7 -1.3 22 6-28 125-146 (356)
380 1uf9_A TT1252 protein; P-loop, 87.6 0.1 3.5E-06 37.3 -0.1 24 4-28 8-31 (203)
381 3tqc_A Pantothenate kinase; bi 87.5 0.08 2.7E-06 41.4 -0.7 21 5-26 93-113 (321)
382 2xb4_A Adenylate kinase; ATP-b 87.4 0.088 3E-06 38.7 -0.5 21 6-27 2-22 (223)
383 3b9q_A Chloroplast SRP recepto 87.4 0.066 2.3E-06 41.5 -1.3 21 6-27 102-122 (302)
384 2npi_A Protein CLP1; CLP1-PCF1 87.2 0.073 2.5E-06 43.8 -1.2 22 6-28 140-161 (460)
385 1p5z_B DCK, deoxycytidine kina 87.2 0.13 4.4E-06 38.7 0.2 24 4-28 24-47 (263)
386 3uc9_A Increased recombination 87.1 0.21 7.1E-06 37.0 1.3 24 5-29 28-53 (233)
387 3be4_A Adenylate kinase; malar 87.1 0.1 3.5E-06 38.1 -0.4 22 5-27 6-27 (217)
388 2dpy_A FLII, flagellum-specifi 86.9 0.083 2.8E-06 43.2 -1.0 24 5-29 158-181 (438)
389 3e70_C DPA, signal recognition 86.9 0.073 2.5E-06 41.8 -1.3 90 54-166 213-308 (328)
390 2pez_A Bifunctional 3'-phospho 86.9 0.089 3E-06 37.0 -0.7 22 5-27 6-27 (179)
391 3kjh_A CO dehydrogenase/acetyl 86.9 3 0.0001 30.4 7.7 64 52-120 131-194 (254)
392 3r20_A Cytidylate kinase; stru 86.9 0.1 3.5E-06 38.9 -0.5 24 2-26 7-30 (233)
393 2oap_1 GSPE-2, type II secreti 86.8 0.099 3.4E-06 43.6 -0.6 22 6-28 262-283 (511)
394 1xjc_A MOBB protein homolog; s 86.8 0.099 3.4E-06 36.9 -0.5 23 4-27 4-26 (169)
395 3sr0_A Adenylate kinase; phosp 86.5 0.1 3.5E-06 38.0 -0.6 22 6-28 2-23 (206)
396 2ewv_A Twitching motility prot 86.4 0.082 2.8E-06 42.2 -1.3 23 5-28 137-159 (372)
397 2yvu_A Probable adenylyl-sulfa 86.3 0.099 3.4E-06 37.0 -0.7 22 5-27 14-35 (186)
398 2w0m_A SSO2452; RECA, SSPF, un 86.2 0.099 3.4E-06 38.1 -0.8 21 6-27 25-45 (235)
399 1ixz_A ATP-dependent metallopr 86.1 0.085 2.9E-06 39.4 -1.3 22 6-28 51-72 (254)
400 1odf_A YGR205W, hypothetical 3 85.9 0.11 3.6E-06 40.1 -0.8 22 4-26 31-52 (290)
401 2p5t_B PEZT; postsegregational 85.8 0.15 5.1E-06 38.2 -0.0 23 4-27 32-54 (253)
402 2iyv_A Shikimate kinase, SK; t 85.8 0.11 3.8E-06 36.6 -0.7 21 6-27 4-24 (184)
403 3kta_A Chromosome segregation 85.7 0.11 3.8E-06 36.5 -0.7 20 6-26 28-47 (182)
404 2x8a_A Nuclear valosin-contain 85.7 0.089 3E-06 40.1 -1.3 21 6-27 46-66 (274)
405 1gvn_B Zeta; postsegregational 85.6 0.12 4.1E-06 39.7 -0.6 22 5-27 34-55 (287)
406 1wcv_1 SOJ, segregation protei 85.6 1.5 5.1E-05 32.6 5.5 67 52-122 111-182 (257)
407 1cr0_A DNA primase/helicase; R 85.5 0.099 3.4E-06 40.1 -1.2 22 6-28 37-58 (296)
408 1zuh_A Shikimate kinase; alpha 85.5 0.13 4.3E-06 35.8 -0.6 23 4-27 7-29 (168)
409 1jbk_A CLPB protein; beta barr 85.4 0.11 3.9E-06 36.3 -0.8 23 5-28 44-66 (195)
410 3qf7_A RAD50; ABC-ATPase, ATPa 85.4 0.54 1.8E-05 37.3 3.0 19 7-26 26-44 (365)
411 2og2_A Putative signal recogni 85.2 0.1 3.4E-06 41.5 -1.3 21 6-27 159-179 (359)
412 2yhs_A FTSY, cell division pro 85.2 0.1 3.5E-06 43.3 -1.3 20 6-26 295-314 (503)
413 1p9r_A General secretion pathw 85.1 0.1 3.5E-06 42.4 -1.3 22 6-28 169-190 (418)
414 2yl4_A ATP-binding cassette SU 84.9 0.17 5.8E-06 43.0 -0.1 23 5-28 371-393 (595)
415 4a82_A Cystic fibrosis transme 84.9 0.18 6.3E-06 42.6 0.1 23 5-28 368-390 (578)
416 1yqt_A RNAse L inhibitor; ATP- 84.9 0.15 5E-06 42.9 -0.5 22 6-28 49-70 (538)
417 3b60_A Lipid A export ATP-bind 84.8 0.16 5.6E-06 43.0 -0.3 23 5-28 370-392 (582)
418 3ozx_A RNAse L inhibitor; ATP 84.6 0.15 5E-06 42.9 -0.6 22 6-28 27-48 (538)
419 2f6r_A COA synthase, bifunctio 84.6 0.17 5.7E-06 38.7 -0.3 22 4-26 75-96 (281)
420 2ze6_A Isopentenyl transferase 84.4 0.14 4.7E-06 38.5 -0.8 20 6-26 3-22 (253)
421 3ohm_A Guanine nucleotide-bind 84.4 0.17 5.9E-06 39.6 -0.3 22 3-25 6-27 (327)
422 2grj_A Dephospho-COA kinase; T 84.3 0.17 5.7E-06 36.4 -0.3 24 4-28 12-35 (192)
423 1m7g_A Adenylylsulfate kinase; 84.1 0.15 5E-06 37.0 -0.7 22 5-27 26-47 (211)
424 1in4_A RUVB, holliday junction 84.1 0.12 4E-06 40.5 -1.3 23 5-28 52-74 (334)
425 3j16_B RLI1P; ribosome recycli 84.1 0.16 5.3E-06 43.4 -0.7 22 6-28 105-126 (608)
426 1iy2_A ATP-dependent metallopr 84.0 0.12 4.1E-06 39.2 -1.3 22 6-28 75-96 (278)
427 4f4c_A Multidrug resistance pr 83.9 0.44 1.5E-05 44.4 2.2 35 5-50 1106-1140(1321)
428 1a7j_A Phosphoribulokinase; tr 83.8 0.22 7.4E-06 38.3 0.1 26 1-27 1-27 (290)
429 1uj2_A Uridine-cytidine kinase 83.7 0.18 6.3E-06 37.6 -0.4 23 4-27 22-44 (252)
430 2xtz_A Guanine nucleotide-bind 83.7 0.18 6.2E-06 40.0 -0.4 22 4-26 9-30 (354)
431 3qf4_B Uncharacterized ABC tra 83.7 0.2 6.8E-06 42.6 -0.2 23 5-28 382-404 (598)
432 1n0w_A DNA repair protein RAD5 83.7 0.15 5.2E-06 37.5 -0.8 22 6-28 26-47 (243)
433 2p65_A Hypothetical protein PF 83.6 0.15 5.1E-06 35.6 -0.9 22 5-27 44-65 (187)
434 3b5x_A Lipid A export ATP-bind 83.6 0.18 6.3E-06 42.7 -0.4 23 5-28 370-392 (582)
435 3qf4_A ABC transporter, ATP-bi 83.4 0.23 7.7E-06 42.2 -0.0 23 5-28 370-392 (587)
436 2cvh_A DNA repair and recombin 83.3 0.16 5.5E-06 36.7 -0.8 21 6-27 22-42 (220)
437 3ake_A Cytidylate kinase; CMP 83.1 0.21 7.2E-06 35.7 -0.2 21 6-27 4-24 (208)
438 3bk7_A ABC transporter ATP-bin 83.1 0.19 6.4E-06 42.9 -0.6 22 6-28 119-140 (607)
439 3euj_A Chromosome partition pr 83.0 0.15 5E-06 42.3 -1.3 20 6-26 31-50 (483)
440 3d3q_A TRNA delta(2)-isopenten 82.9 0.21 7.2E-06 39.3 -0.4 22 5-27 8-29 (340)
441 3nwj_A ATSK2; P loop, shikimat 82.8 0.17 6E-06 38.0 -0.8 22 5-27 49-70 (250)
442 3ozx_A RNAse L inhibitor; ATP 82.6 0.2 6.9E-06 42.0 -0.6 23 6-29 296-318 (538)
443 1cip_A Protein (guanine nucleo 82.5 0.22 7.6E-06 39.4 -0.3 22 3-25 31-52 (353)
444 2ph1_A Nucleotide-binding prot 82.2 1.5 5.1E-05 32.7 4.2 66 52-121 128-194 (262)
445 4fid_A G protein alpha subunit 82.0 0.25 8.4E-06 39.0 -0.3 22 3-25 4-25 (340)
446 3umf_A Adenylate kinase; rossm 81.9 0.26 8.8E-06 36.2 -0.2 20 7-27 32-51 (217)
447 3v9p_A DTMP kinase, thymidylat 81.8 0.25 8.6E-06 36.5 -0.2 24 3-27 24-47 (227)
448 1azs_C GS-alpha; complex (lyas 81.8 0.28 9.5E-06 39.6 -0.0 22 3-25 39-60 (402)
449 3bos_A Putative DNA replicatio 81.6 0.2 7E-06 36.5 -0.8 22 5-27 53-74 (242)
450 3q9l_A Septum site-determining 81.6 2.3 7.9E-05 31.4 5.1 66 52-121 113-185 (260)
451 1ltq_A Polynucleotide kinase; 81.3 0.22 7.6E-06 38.1 -0.7 22 5-27 3-24 (301)
452 1f2t_A RAD50 ABC-ATPase; DNA d 81.2 0.19 6.5E-06 34.5 -1.1 19 7-26 26-44 (149)
453 3bk7_A ABC transporter ATP-bin 80.8 0.25 8.4E-06 42.2 -0.7 23 6-29 384-406 (607)
454 2w58_A DNAI, primosome compone 80.6 0.23 7.9E-06 35.5 -0.8 22 5-27 55-76 (202)
455 1nlf_A Regulatory protein REPA 80.6 0.24 8.4E-06 37.5 -0.7 21 6-27 32-52 (279)
456 1yqt_A RNAse L inhibitor; ATP- 80.4 0.28 9.5E-06 41.2 -0.5 23 6-29 314-336 (538)
457 1c9k_A COBU, adenosylcobinamid 80.4 0.27 9.2E-06 35.0 -0.5 21 7-28 2-22 (180)
458 3j16_B RLI1P; ribosome recycli 79.8 0.27 9.3E-06 41.9 -0.7 22 7-29 381-402 (608)
459 1njg_A DNA polymerase III subu 79.7 0.26 8.9E-06 35.7 -0.8 21 6-27 47-67 (250)
460 1svm_A Large T antigen; AAA+ f 79.7 0.22 7.5E-06 39.8 -1.3 22 5-27 170-191 (377)
461 1lv7_A FTSH; alpha/beta domain 79.6 0.27 9.3E-06 36.7 -0.7 22 5-27 46-67 (257)
462 2ocp_A DGK, deoxyguanosine kin 79.4 0.29 9.8E-06 36.2 -0.7 22 5-27 3-24 (241)
463 3tmk_A Thymidylate kinase; pho 79.0 0.39 1.3E-05 35.2 -0.0 26 1-27 2-27 (216)
464 1q3t_A Cytidylate kinase; nucl 78.9 0.32 1.1E-05 35.9 -0.5 22 5-27 17-38 (236)
465 2iw3_A Elongation factor 3A; a 78.8 0.31 1.1E-05 43.8 -0.7 24 6-30 463-486 (986)
466 2dr3_A UPF0273 protein PH0284; 78.7 0.3 1E-05 35.9 -0.7 20 6-26 25-44 (247)
467 3co5_A Putative two-component 78.4 0.45 1.5E-05 32.1 0.1 23 5-28 28-50 (143)
468 2qmh_A HPR kinase/phosphorylas 78.3 0.35 1.2E-05 35.1 -0.5 24 5-29 35-58 (205)
469 4f4c_A Multidrug resistance pr 78.2 0.93 3.2E-05 42.3 2.2 23 5-28 445-467 (1321)
470 2px0_A Flagellar biosynthesis 78.2 0.32 1.1E-05 37.4 -0.7 85 52-157 182-272 (296)
471 3u61_B DNA polymerase accessor 77.7 0.77 2.6E-05 35.4 1.3 21 6-27 49-70 (324)
472 1pzn_A RAD51, DNA repair and r 77.3 0.36 1.2E-05 38.1 -0.7 22 6-28 133-154 (349)
473 1sky_E F1-ATPase, F1-ATP synth 77.1 0.39 1.3E-05 39.6 -0.6 23 5-28 152-174 (473)
474 1l8q_A Chromosomal replication 76.8 0.36 1.2E-05 37.3 -0.8 22 5-27 38-59 (324)
475 2qby_A CDC6 homolog 1, cell di 76.8 0.38 1.3E-05 37.8 -0.7 22 5-27 46-67 (386)
476 3h4m_A Proteasome-activating n 76.5 0.38 1.3E-05 36.4 -0.8 23 5-28 52-74 (285)
477 3crm_A TRNA delta(2)-isopenten 76.4 0.45 1.5E-05 37.2 -0.4 21 6-27 7-27 (323)
478 1hyq_A MIND, cell division inh 76.4 4.9 0.00017 29.7 5.5 64 53-121 111-174 (263)
479 2iw3_A Elongation factor 3A; a 76.4 0.32 1.1E-05 43.7 -1.3 23 6-29 701-723 (986)
480 3ux8_A Excinuclease ABC, A sub 76.1 0.47 1.6E-05 40.9 -0.3 20 6-26 350-369 (670)
481 3b9p_A CG5977-PA, isoform A; A 76.0 0.4 1.4E-05 36.5 -0.8 22 5-27 55-76 (297)
482 4edh_A DTMP kinase, thymidylat 76.0 0.4 1.4E-05 35.0 -0.7 20 6-26 8-27 (213)
483 3cr8_A Sulfate adenylyltranfer 75.4 0.31 1.1E-05 41.1 -1.6 23 5-28 370-392 (552)
484 3zvl_A Bifunctional polynucleo 75.3 0.54 1.9E-05 38.0 -0.2 22 5-27 259-280 (416)
485 2qz4_A Paraplegin; AAA+, SPG7, 75.3 0.42 1.4E-05 35.5 -0.8 22 5-27 40-61 (262)
486 2oze_A ORF delta'; para, walke 75.1 5.5 0.00019 30.1 5.5 67 52-122 154-225 (298)
487 1vma_A Cell division protein F 75.1 0.42 1.5E-05 37.0 -0.8 85 53-158 187-283 (306)
488 3n70_A Transport activator; si 75.0 0.42 1.4E-05 32.3 -0.8 24 4-28 24-47 (145)
489 3lda_A DNA repair protein RAD5 74.8 0.46 1.6E-05 38.3 -0.7 20 6-26 180-199 (400)
490 4hlc_A DTMP kinase, thymidylat 74.6 0.45 1.5E-05 34.5 -0.7 19 7-26 5-23 (205)
491 2qen_A Walker-type ATPase; unk 74.3 0.46 1.6E-05 36.8 -0.8 22 6-28 33-54 (350)
492 3qks_A DNA double-strand break 74.0 0.46 1.6E-05 34.3 -0.8 19 7-26 26-44 (203)
493 2fna_A Conserved hypothetical 74.0 0.49 1.7E-05 36.7 -0.7 21 6-27 32-52 (357)
494 3syl_A Protein CBBX; photosynt 73.9 0.5 1.7E-05 36.1 -0.7 20 6-26 69-88 (309)
495 3lv8_A DTMP kinase, thymidylat 73.8 0.51 1.7E-05 35.1 -0.6 21 5-26 28-48 (236)
496 3t15_A Ribulose bisphosphate c 73.8 0.5 1.7E-05 36.2 -0.7 21 6-27 38-58 (293)
497 1fnn_A CDC6P, cell division co 73.8 0.49 1.7E-05 37.3 -0.8 22 6-28 46-67 (389)
498 1tue_A Replication protein E1; 73.7 0.46 1.6E-05 34.7 -0.9 21 6-27 60-80 (212)
499 1tf7_A KAIC; homohexamer, hexa 73.6 0.52 1.8E-05 39.3 -0.7 19 6-25 41-59 (525)
500 4aby_A DNA repair protein RECN 73.4 0.39 1.3E-05 38.6 -1.5 19 6-25 62-80 (415)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=100.00 E-value=4.5e-43 Score=263.63 Aligned_cols=162 Identities=28% Similarity=0.397 Sum_probs=140.4
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEE
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 82 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~ 82 (207)
.+||+++|+++|| ||||+++|+.+.|...|.||++.++ ...+.+++..+.+.||||+|+++|+++++.|+++++++++
T Consensus 13 ~~KivlvGd~~VG-KTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~il 91 (216)
T 4dkx_A 13 KFKLVFLGEQSVG-KTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAVV 91 (216)
T ss_dssp CEEEEEECSTTSS-HHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEEEE
T ss_pred cEEEEEECcCCcC-HHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEEEE
Confidence 5799999999999 9999999999999999999999776 5678889999999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCC
Q 028595 83 AFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT 161 (207)
Q Consensus 83 v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 161 (207)
|||+++++||+.+ ..|+..+.... +++|++|||||+|+.+.+.+ +.++++++++.+++ +|+||||++
T Consensus 92 v~di~~~~Sf~~i-~~~~~~i~~~~~~~~piilVgNK~Dl~~~r~V----------~~~e~~~~a~~~~~-~~~e~SAkt 159 (216)
T 4dkx_A 92 VYDITNVNSFQQT-TKWIDDVRTERGSDVIIMLVGNKTDLADKRQV----------SIEEGERKAKELNV-MFIETSAKA 159 (216)
T ss_dssp EEETTCHHHHHTH-HHHHHHHHHHHTTSSEEEEEEECTTCGGGCCS----------CHHHHHHHHHHHTC-EEEEEBTTT
T ss_pred EeecchhHHHHHH-HHHHHHHHHhcCCCCeEEEEeeccchHhcCcc----------cHHHHhhHHHHhCC-eeEEEeCCC
Confidence 9999999999999 78888886654 78999999999999887764 99999999999998 899999999
Q ss_pred CCCHHHHHHHHHHHHhC
Q 028595 162 QQNVKAVFDAAIKVVIK 178 (207)
Q Consensus 162 ~~~i~~~f~~i~~~~~~ 178 (207)
|.||+++|+.|++.+..
T Consensus 160 g~nV~e~F~~i~~~i~~ 176 (216)
T 4dkx_A 160 GYNVKQLFRRVAAALPG 176 (216)
T ss_dssp TBSHHHHHHHHHHHC--
T ss_pred CcCHHHHHHHHHHHHHh
Confidence 99999999999998864
No 2
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=100.00 E-value=1.1e-36 Score=228.13 Aligned_cols=191 Identities=63% Similarity=1.007 Sum_probs=152.2
Q ss_pred cceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEE
Q 028595 3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 82 (207)
Q Consensus 3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~ 82 (207)
..+||+++|.+++| ||||+++|.++.+...+.||+++.+...+.+++..+.+.+|||||++.+..++..+++++|++|+
T Consensus 8 ~~~ki~i~G~~~~G-KTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~il 86 (212)
T 2j0v_A 8 KFIKCVTVGDGAVG-KTCMLICYTSNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVL 86 (212)
T ss_dssp CEEEEEEEESTTSS-HHHHHHHHHHSCCCSSCCCSSCCCEEEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEEE
T ss_pred ceEEEEEECCCCCC-HHHHHHHHhcCCCCccCCCccceeEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEEE
Confidence 35899999999999 99999999999988889999998887788889999999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCCC
Q 028595 83 AFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQ 162 (207)
Q Consensus 83 v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~ 162 (207)
|||++++++++.+...|+..+....++.|+++|+||+|+.+.+.+..+ ....+..++++.+++.++..+|+++||++|
T Consensus 87 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g 164 (212)
T 2j0v_A 87 AFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLAD--HTNVITSTQGEELRKQIGAAAYIECSSKTQ 164 (212)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHT--CSSCCCHHHHHHHHHHHTCSEEEECCTTTC
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhCcccccc--ccCCCCHHHHHHHHHHcCCceEEEccCCCC
Confidence 999999999999855899999887789999999999999765432111 111347888999999999669999999999
Q ss_pred CCHHHHHHHHHHHHhCCCcchh----hhcccCCCeEEe
Q 028595 163 QNVKAVFDAAIKVVIKPPQKQK----EKKKKQRGCLLN 196 (207)
Q Consensus 163 ~~i~~~f~~i~~~~~~~~~~~~----~~~~~~~~c~~~ 196 (207)
.|++++|+++++.+.+.+...+ ++++++..|.++
T Consensus 165 ~gi~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~c~~~ 202 (212)
T 2j0v_A 165 QNVKAVFDTAIKVVLQPPRRKEVPRRRKNHRRSGCSIA 202 (212)
T ss_dssp TTHHHHHHHHHHHHHCC---------------------
T ss_pred CCHHHHHHHHHHHHhhhhhhcccccccccccCCCcEEe
Confidence 9999999999999988765444 233334567764
No 3
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=100.00 E-value=1.3e-35 Score=223.00 Aligned_cols=179 Identities=32% Similarity=0.555 Sum_probs=151.8
Q ss_pred cceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEE
Q 028595 3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 82 (207)
Q Consensus 3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~ 82 (207)
..+||+++|.+++| ||||+++|+++.+...+.||++..+...+.+++..+.+.+|||+|++.+..++..+++++|++|+
T Consensus 26 ~~~ki~vvG~~~vG-KSsL~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 104 (214)
T 3q3j_B 26 ARCKLVLVGDVQCG-KTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLL 104 (214)
T ss_dssp -CEEEEEECSTTSS-HHHHHHHHHHSCCCSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred ceEEEEEECcCCCC-HHHHHHHHhcCCCCCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeEEEE
Confidence 46899999999999 99999999999999999999999988888888999999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCccccc--CCCCCcccCHHHHHHHHHHhCCcEEEEeccC
Q 028595 83 AFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSK 160 (207)
Q Consensus 83 v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 160 (207)
|||+++++++..+...|+..+....+++|+++||||+|+.++..... .....+.+..++++.+++.+++.+|+++||+
T Consensus 105 v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SA~ 184 (214)
T 3q3j_B 105 CFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAF 184 (214)
T ss_dssp EEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEEECCTT
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCEEEEeccC
Confidence 99999999999954899999988888999999999999976410000 0001122588999999999998799999999
Q ss_pred CCCC-HHHHHHHHHHHHhCCCcc
Q 028595 161 TQQN-VKAVFDAAIKVVIKPPQK 182 (207)
Q Consensus 161 ~~~~-i~~~f~~i~~~~~~~~~~ 182 (207)
+|.| ++++|+++++.+..+...
T Consensus 185 ~g~g~v~~lf~~l~~~~~~~~~~ 207 (214)
T 3q3j_B 185 TSEKSIHSIFRTASMLCLNKPSP 207 (214)
T ss_dssp TCHHHHHHHHHHHHHHHHC----
T ss_pred CCcccHHHHHHHHHHHHhccCcC
Confidence 9998 999999999999877543
No 4
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=100.00 E-value=5.1e-35 Score=216.21 Aligned_cols=169 Identities=37% Similarity=0.627 Sum_probs=154.1
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEE
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA 83 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v 83 (207)
.+||+++|.+++| ||||+++|+++.+...+.||.+..+...+.+++..+.+.+|||||++.+..++..+++++|++++|
T Consensus 23 ~~ki~~vG~~~~G-KSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v 101 (194)
T 3reg_A 23 ALKIVVVGDGAVG-KTCLLLAFSKGEIPTAYVPTVFENFSHVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVLLC 101 (194)
T ss_dssp EEEEEEECSTTSS-HHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred eeEEEEECcCCCC-HHHHHHHHhcCCCCCccCCeeeeeeEEEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEEEEE
Confidence 5799999999999 999999999999988999999999988888999999999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCCCC
Q 028595 84 FSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQ 163 (207)
Q Consensus 84 ~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~ 163 (207)
||+++++++..+...|+..+....+++|+++|+||+|+.+... +.+..++++.+++.+++..++++||++|.
T Consensus 102 ~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 173 (194)
T 3reg_A 102 FAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGS--------DDVTKQEGDDLCQKLGCVAYIEASSVAKI 173 (194)
T ss_dssp EETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTTT--------TCCCHHHHHHHHHHHTCSCEEECBTTTTB
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCCC--------CcccHHHHHHHHHhcCCCEEEEeecCCCC
Confidence 9999999999976789999988778999999999999975421 12488999999999998459999999999
Q ss_pred CHHHHHHHHHHHHhCCCc
Q 028595 164 NVKAVFDAAIKVVIKPPQ 181 (207)
Q Consensus 164 ~i~~~f~~i~~~~~~~~~ 181 (207)
|++++|+++++.+..++.
T Consensus 174 gi~~l~~~l~~~i~~~~~ 191 (194)
T 3reg_A 174 GLNEVFEKSVDCIFSNKP 191 (194)
T ss_dssp SHHHHHHHHHHHHHCSCC
T ss_pred CHHHHHHHHHHHHHhcCC
Confidence 999999999999987754
No 5
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=100.00 E-value=2.1e-35 Score=219.81 Aligned_cols=162 Identities=28% Similarity=0.423 Sum_probs=148.7
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEE
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA 83 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v 83 (207)
.+||+++|.+++| ||||+++|.++.+...+.+|.+..+...+.+++..+.+.+|||||++.+..++..+++++|++++|
T Consensus 14 ~~ki~v~G~~~~G-KSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v 92 (206)
T 2bov_A 14 LHKVIMVGSGGVG-KSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCV 92 (206)
T ss_dssp EEEEEEECSTTSS-HHHHHHHHHHSCCCTTCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred eEEEEEECCCCCC-HHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEEEEE
Confidence 5799999999999 999999999999888899999988888888899999999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcC--CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCC
Q 028595 84 FSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT 161 (207)
Q Consensus 84 ~d~~~~~s~~~~~~~~~~~i~~~~--~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 161 (207)
||+++++++..+ ..|+..+.... .++|+++|+||+|+.+.+.+ ..++++.+++.+++ +++++||++
T Consensus 93 ~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~----------~~~~~~~~~~~~~~-~~~~~Sa~~ 160 (206)
T 2bov_A 93 FSITEMESFAAT-ADFREQILRVKEDENVPFLLVGNKSDLEDKRQV----------SVEEAKNRAEQWNV-NYVETSAKT 160 (206)
T ss_dssp EETTCHHHHHHH-HHHHHHHHHHTTCSCCCEEEEEECTTCGGGCCS----------CHHHHHHHHHHHTC-EEEEECTTT
T ss_pred EECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEeccCccccccc----------cHHHHHHHHHHhCC-eEEEEeCCC
Confidence 999999999998 78888887765 38999999999999876553 78899999999998 999999999
Q ss_pred CCCHHHHHHHHHHHHhC
Q 028595 162 QQNVKAVFDAAIKVVIK 178 (207)
Q Consensus 162 ~~~i~~~f~~i~~~~~~ 178 (207)
|.|++++|+++++.+..
T Consensus 161 g~gi~~l~~~l~~~i~~ 177 (206)
T 2bov_A 161 RANVDKVFFDLMREIRA 177 (206)
T ss_dssp CTTHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999999998864
No 6
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=100.00 E-value=2.4e-35 Score=216.51 Aligned_cols=180 Identities=30% Similarity=0.465 Sum_probs=148.1
Q ss_pred cceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEE
Q 028595 3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 82 (207)
Q Consensus 3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~ 82 (207)
..+||+++|.+++| ||||+++|.++.+...+.+|.+..+...+.+++..+.+.+|||||++.+..++..+++++|++++
T Consensus 3 ~~~ki~v~G~~~~G-KSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 81 (189)
T 4dsu_A 3 TEYKLVVVGADGVG-KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLC 81 (189)
T ss_dssp EEEEEEEECCTTSS-HHHHHHHHHHSSCCCCCCTTCCEEEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEE
T ss_pred cEEEEEEECCCCCC-HHHHHHHHHhCCCCCCCCCCchheEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEE
Confidence 46799999999999 99999999999988889999988888888899999999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhcC--CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccC
Q 028595 83 AFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK 160 (207)
Q Consensus 83 v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 160 (207)
|||+++++++..+ ..|+..+.... ++.|+++|+||+|+.+.. +..++++.+++.+++ +++++||+
T Consensus 82 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~-----------~~~~~~~~~~~~~~~-~~~~~Sa~ 148 (189)
T 4dsu_A 82 VFAINNTKSFEDI-HHYREQIKRVKDSEDVPMVLVGNKCDLPSRT-----------VDTKQAQDLARSYGI-PFIETSAK 148 (189)
T ss_dssp EEETTCHHHHHHH-HHHHHHHHHHTTCSCCCEEEEEECTTSSSCS-----------SCHHHHHHHHHHHTC-CEEECCTT
T ss_pred EEECCCHHHHHHH-HHHHHHHHHhcCCCCCcEEEEEECccCcccc-----------cCHHHHHHHHHHcCC-eEEEEeCC
Confidence 9999999999998 78887776644 589999999999997543 378899999999998 99999999
Q ss_pred CCCCHHHHHHHHHHHHhCCCc-----chhhhcccCCCeEEe
Q 028595 161 TQQNVKAVFDAAIKVVIKPPQ-----KQKEKKKKQRGCLLN 196 (207)
Q Consensus 161 ~~~~i~~~f~~i~~~~~~~~~-----~~~~~~~~~~~c~~~ 196 (207)
+|.|++++|+++++.+...+. ....+++++.+|+++
T Consensus 149 ~g~gi~~l~~~l~~~~~~~~~~~~~~~~~~~kk~~~~c~i~ 189 (189)
T 4dsu_A 149 TRQGVDDAFYTLVREIRKHKEKMSKDGKKKKKKSKTKCVIM 189 (189)
T ss_dssp TCTTHHHHHHHHHHHHHHHHHHHHHCSSTTCCC--------
T ss_pred CCCCHHHHHHHHHHHHHHhhhhcccccccccccccceeeeC
Confidence 999999999999999875432 222334445667654
No 7
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=100.00 E-value=3.5e-35 Score=214.92 Aligned_cols=164 Identities=24% Similarity=0.444 Sum_probs=119.6
Q ss_pred cceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEE
Q 028595 3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 81 (207)
Q Consensus 3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i 81 (207)
..+||+++|.+++| ||||+++|+++.+...+.||++..+ ...+.+++..+.+.+|||||++.+..++..+++++|++|
T Consensus 7 ~~~ki~v~G~~~~G-Kssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 85 (183)
T 2fu5_C 7 YLFKLLLIGDSGVG-KTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIM 85 (183)
T ss_dssp EEEEEEEECCCCC-----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEE
T ss_pred CceEEEEECCCCCC-HHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEE
Confidence 46899999999999 9999999999988888889988777 457788999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccC
Q 028595 82 LAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK 160 (207)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 160 (207)
+|||++++++++.+ ..|+..+.... +++|+++|+||+|+.+.+.+ ..++++.+++.+++ +++++||+
T Consensus 86 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~v----------~~~~~~~~~~~~~~-~~~~~Sa~ 153 (183)
T 2fu5_C 86 LVYDITNEKSFDNI-RNWIRNIEEHASADVEKMILGNKCDVNDKRQV----------SKERGEKLALDYGI-KFMETSAK 153 (183)
T ss_dssp EEEETTCHHHHHHH-HHHHHHHHHHSCTTCEEEEEEEC--CCSCCCS----------CHHHHHHHHHHHTC-EEEECCC-
T ss_pred EEEECcCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECccCCccCcC----------CHHHHHHHHHHcCC-eEEEEeCC
Confidence 99999999999998 78988887754 68999999999999776553 78899999999998 99999999
Q ss_pred CCCCHHHHHHHHHHHHhCC
Q 028595 161 TQQNVKAVFDAAIKVVIKP 179 (207)
Q Consensus 161 ~~~~i~~~f~~i~~~~~~~ 179 (207)
+|.|++++|+++++.+...
T Consensus 154 ~~~~i~~l~~~l~~~i~~~ 172 (183)
T 2fu5_C 154 ANINVENAFFTLARDIKAK 172 (183)
T ss_dssp --CCHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHH
Confidence 9999999999999998754
No 8
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.7e-35 Score=219.00 Aligned_cols=176 Identities=27% Similarity=0.351 Sum_probs=145.4
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEE
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA 83 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v 83 (207)
.+||+++|.+++| ||||+++|+++.+...+.+|.+..+...+.+++..+.+.+|||||++.+..++..+++++|++++|
T Consensus 24 ~~ki~vvG~~~~G-KSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 102 (201)
T 3oes_A 24 YRKVVILGYRCVG-KTSLAHQFVEGEFSEGYDPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYVLV 102 (201)
T ss_dssp EEEEEEEESTTSS-HHHHHHHHHHSCCCSCCCCCSEEEEEEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCEEEEE
T ss_pred cEEEEEECCCCcC-HHHHHHHHHhCCCCCCCCCccceEEEEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCEEEEE
Confidence 6799999999999 999999999999998999999988877777788889999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcC--CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCC
Q 028595 84 FSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT 161 (207)
Q Consensus 84 ~d~~~~~s~~~~~~~~~~~i~~~~--~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 161 (207)
||++++++++.+ ..|+..+.... +++|+++|+||+|+.+.+.+ ..++++.+++.+++ +++++||++
T Consensus 103 ~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v----------~~~~~~~~~~~~~~-~~~~~Sa~~ 170 (201)
T 3oes_A 103 YSVTSLHSFQVI-ESLYQKLHEGHGKTRVPVVLVGNKADLSPEREV----------QAVEGKKLAESWGA-TFMESSARE 170 (201)
T ss_dssp EETTCHHHHHHH-HHHHHHHHC-----CCCEEEEEECTTCGGGCCS----------CHHHHHHHHHHHTC-EEEECCTTC
T ss_pred EeCCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccCcccccc----------CHHHHHHHHHHhCC-eEEEEeCCC
Confidence 999999999999 78888887653 47999999999999876664 88999999999998 999999999
Q ss_pred CCCHHHHHHHHHHHHhCCCcchhhhcccCCCeEEe
Q 028595 162 QQNVKAVFDAAIKVVIKPPQKQKEKKKKQRGCLLN 196 (207)
Q Consensus 162 ~~~i~~~f~~i~~~~~~~~~~~~~~~~~~~~c~~~ 196 (207)
|.|++++|+++++.+...+.. .+++.+|.++
T Consensus 171 ~~~v~~l~~~l~~~i~~~~~~----~~~~~~c~l~ 201 (201)
T 3oes_A 171 NQLTQGIFTKVIQEIARVENS----YGQERRCHLM 201 (201)
T ss_dssp HHHHHHHHHHHHHHHHHC-----------------
T ss_pred CCCHHHHHHHHHHHHHhhhhh----hccccccccC
Confidence 999999999999999876543 2334456653
No 9
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=100.00 E-value=1.2e-34 Score=211.61 Aligned_cols=166 Identities=25% Similarity=0.318 Sum_probs=149.3
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEE
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA 83 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v 83 (207)
..||+++|.+++| ||||+++|+++.+...+.+|.+..+...+.+++..+.+.+|||||++.+..++..+++++|++++|
T Consensus 6 ~~ki~~~G~~~~G-KSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v 84 (181)
T 3t5g_A 6 SRKIAILGYRSVG-KSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILV 84 (181)
T ss_dssp EEEEEEEESTTSS-HHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEEEE
T ss_pred eEEEEEECcCCCC-HHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEEEE
Confidence 6799999999999 999999999998889999999998877888999999999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcC--CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCC
Q 028595 84 FSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT 161 (207)
Q Consensus 84 ~d~~~~~s~~~~~~~~~~~i~~~~--~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 161 (207)
||++++++++.+ ..|+..+.... +++|+++|+||+|+.+.+.+ ..++++.+++.+++ +++++||++
T Consensus 85 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~----------~~~~~~~~~~~~~~-~~~~~Sa~~ 152 (181)
T 3t5g_A 85 YSVTSIKSFEVI-KVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVI----------SYEEGKALAESWNA-AFLESSAKE 152 (181)
T ss_dssp EETTCHHHHHHH-HHHHHHHHHHC----CCEEEEEECTTCTTTCCS----------CHHHHHHHHHHTTC-EEEECCTTS
T ss_pred EECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccchhccee----------cHHHHHHHHHHhCC-cEEEEecCC
Confidence 999999999999 77887775544 48999999999999776654 88999999999998 999999999
Q ss_pred CCCHHHHHHHHHHHHhCCCcc
Q 028595 162 QQNVKAVFDAAIKVVIKPPQK 182 (207)
Q Consensus 162 ~~~i~~~f~~i~~~~~~~~~~ 182 (207)
|.|++++|+++++.+...+..
T Consensus 153 ~~~v~~l~~~l~~~~~~~~~~ 173 (181)
T 3t5g_A 153 NQTAVDVFRRIILEAEKMDGA 173 (181)
T ss_dssp HHHHHHHHHHHHHHHHTC---
T ss_pred CCCHHHHHHHHHHHHHHhcCC
Confidence 999999999999999877643
No 10
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.6e-34 Score=213.48 Aligned_cols=176 Identities=44% Similarity=0.778 Sum_probs=152.7
Q ss_pred cceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEE
Q 028595 3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 82 (207)
Q Consensus 3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~ 82 (207)
..+||+++|.+++| ||||+++|+++.+...+.||++..+...+.+++..+.+.+|||||++++..++..+++++|++++
T Consensus 17 ~~~ki~v~G~~~~G-Kssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~ 95 (194)
T 2atx_A 17 LMLKCVVVGDGAVG-KTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLI 95 (194)
T ss_dssp EEEEEEEEECTTSS-HHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEEE
T ss_pred ceEEEEEECCCCCC-HHHHHHHHhcCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEEEE
Confidence 35799999999999 99999999999988889999998887788888889999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCccccc--CCCCCcccCHHHHHHHHHHhCCcEEEEeccC
Q 028595 83 AFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSK 160 (207)
Q Consensus 83 v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 160 (207)
|||+++++++..+...|+..+....+++|+++|+||+|+.+...... .....+.+..+++..+++.++..+++++||+
T Consensus 96 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~ 175 (194)
T 2atx_A 96 CFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSAL 175 (194)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEECCTT
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEEEEeeCC
Confidence 99999999999984489999988778999999999999976431100 0011223578999999999997689999999
Q ss_pred CCCCHHHHHHHHHHHHhCC
Q 028595 161 TQQNVKAVFDAAIKVVIKP 179 (207)
Q Consensus 161 ~~~~i~~~f~~i~~~~~~~ 179 (207)
+|.|++++|+++++.++.+
T Consensus 176 ~g~gi~~l~~~l~~~i~~p 194 (194)
T 2atx_A 176 TQKGLKTVFDEAIIAILTP 194 (194)
T ss_dssp TCTTHHHHHHHHHHHHHCC
T ss_pred CCCCHHHHHHHHHHHHhcC
Confidence 9999999999999988753
No 11
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=100.00 E-value=1e-34 Score=213.67 Aligned_cols=162 Identities=23% Similarity=0.346 Sum_probs=144.0
Q ss_pred cceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEE
Q 028595 3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 82 (207)
Q Consensus 3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~ 82 (207)
..+||+++|.+++| ||||+++|+++.+...+.+|++..+...+.+++..+.+.+|||+|++.+..+ ..+++++|++++
T Consensus 20 ~~~ki~vvG~~~vG-KTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~il 97 (187)
T 3c5c_A 20 LEVNLAILGRRGAG-KSALTVKFLTKRFISEYDPNLEDTYSSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAFLV 97 (187)
T ss_dssp CEEEEEEECCTTSS-HHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEEEE
T ss_pred ceEEEEEECCCCCc-HHHHHHHHHhCCCCcccCCCccceeeEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEEEE
Confidence 35799999999999 9999999999999889999999888778888999999999999999998875 679999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhcC----CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEec
Q 028595 83 AFSLVSRASYENVLKKWIPELQHYS----PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECS 158 (207)
Q Consensus 83 v~d~~~~~s~~~~~~~~~~~i~~~~----~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~S 158 (207)
|||++++++++.+ ..|+..+.... +++|+++|+||+|+.+.+.+ ..++++++++.+++ +++++|
T Consensus 98 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v----------~~~~~~~~~~~~~~-~~~e~S 165 (187)
T 3c5c_A 98 VYSVDSRQSFDSS-SSYLELLALHAKETQRSIPALLLGNKLDMAQYRQV----------TKAEGVALAGRFGC-LFFEVS 165 (187)
T ss_dssp EEETTCHHHHHHH-HHHHHHHHHHHHHHCCCCCEEEEEECGGGGGGCSS----------CHHHHHHHHHHHTC-EEEECC
T ss_pred EEECCCHHHHHHH-HHHHHHHHHHhhccCCCCCEEEEEECcchhhcCcc----------CHHHHHHHHHHcCC-cEEEEe
Confidence 9999999999999 78888887653 58999999999999776653 88999999999998 999999
Q ss_pred c-CCCCCHHHHHHHHHHHHhC
Q 028595 159 S-KTQQNVKAVFDAAIKVVIK 178 (207)
Q Consensus 159 a-~~~~~i~~~f~~i~~~~~~ 178 (207)
| ++|.|++++|+.+++.+.+
T Consensus 166 a~~~g~gv~~lf~~l~~~i~~ 186 (187)
T 3c5c_A 166 ACLDFEHVQHVFHEAVREARR 186 (187)
T ss_dssp SSSCSHHHHHHHHHHHHHHHC
T ss_pred ecCccccHHHHHHHHHHHHhh
Confidence 9 8999999999999988754
No 12
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=100.00 E-value=1.1e-34 Score=212.83 Aligned_cols=175 Identities=33% Similarity=0.596 Sum_probs=150.9
Q ss_pred cceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEE
Q 028595 3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 82 (207)
Q Consensus 3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~ 82 (207)
..+||+++|.+++| ||||+++|.++.+...+.||.+..+...+.+++..+.+.+|||||++.+..++..+++++|++++
T Consensus 6 ~~~ki~v~G~~~vG-KSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 84 (184)
T 1m7b_A 6 VKCKIVVVGDSQCG-KTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLI 84 (184)
T ss_dssp CEEEEEEEESTTSS-HHHHHHHHHHSCCCSSCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred eEEEEEEECCCCCC-HHHHHHHHhcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEEE
Confidence 46899999999999 99999999999988889999998887788888889999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCccccc--CCCCCcccCHHHHHHHHHHhCCcEEEEeccC
Q 028595 83 AFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSK 160 (207)
Q Consensus 83 v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 160 (207)
|||++++++++.+...|+..+....++.|+++|+||+|+.+...... .....+.+..++++++++.++..+|+++||+
T Consensus 85 v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 164 (184)
T 1m7b_A 85 CFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSAL 164 (184)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECBTT
T ss_pred EEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEEeeec
Confidence 99999999999986689888888778999999999999975311000 0011233588899999999985599999999
Q ss_pred -CCCCHHHHHHHHHHHHhC
Q 028595 161 -TQQNVKAVFDAAIKVVIK 178 (207)
Q Consensus 161 -~~~~i~~~f~~i~~~~~~ 178 (207)
++.|++++|+.+++.++.
T Consensus 165 ~~~~gi~~l~~~i~~~~l~ 183 (184)
T 1m7b_A 165 QSENSVRDIFHVATLACVN 183 (184)
T ss_dssp TBHHHHHHHHHHHHHHHHT
T ss_pred CCCcCHHHHHHHHHHHHhc
Confidence 689999999999998874
No 13
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=100.00 E-value=1.5e-34 Score=214.68 Aligned_cols=176 Identities=44% Similarity=0.654 Sum_probs=144.7
Q ss_pred cceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEE
Q 028595 3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 82 (207)
Q Consensus 3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~ 82 (207)
..+||+++|.+++| ||||+++|+++.+...+.||+++.+...+.+++..+.+.+|||||++.+..++..++.++|++++
T Consensus 19 ~~~ki~~~G~~~~G-Kssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 97 (201)
T 2q3h_A 19 RGVKCVLVGDGAVG-KTSLVVSYTTNGYPTEYIPTAFDNFSAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLL 97 (201)
T ss_dssp -CEEEEEECSTTSS-HHHHHHHHHC--------CCSSEEEEEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSEEEE
T ss_pred cceEEEEECCCCCC-HHHHHHHHHhCCCCCCCCCcccceeEEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcEEEE
Confidence 46899999999999 99999999999988889999998888888889999999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCccccc--CCCCCcccCHHHHHHHHHHhCCcEEEEeccC
Q 028595 83 AFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSK 160 (207)
Q Consensus 83 v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 160 (207)
|||+++++++..+...|+..+....+++|+++|+||+|+.+...... .....+.+..+++..+++.++..+++++||+
T Consensus 98 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~ 177 (201)
T 2q3h_A 98 CFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSAL 177 (201)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECCTT
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEEEEEecC
Confidence 99999999999984479998888778999999999999976321000 0001123578899999999997789999999
Q ss_pred CCCCHHHHHHHHHHHHhCC
Q 028595 161 TQQNVKAVFDAAIKVVIKP 179 (207)
Q Consensus 161 ~~~~i~~~f~~i~~~~~~~ 179 (207)
+|.|++++|+++++.+..+
T Consensus 178 ~g~gi~~l~~~l~~~~~~~ 196 (201)
T 2q3h_A 178 TQKNLKEVFDAAIVAGIQY 196 (201)
T ss_dssp TCTTHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhcc
Confidence 9999999999999988754
No 14
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=100.00 E-value=2.4e-34 Score=210.59 Aligned_cols=177 Identities=51% Similarity=0.829 Sum_probs=153.3
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEE
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA 83 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v 83 (207)
.+||+++|.+++| ||||+++|+++.+...+.+|.+..+...+.+++..+.+.+|||||++.+..++..+++++|++++|
T Consensus 5 ~~~i~~~G~~~~G-Kssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v 83 (186)
T 1mh1_A 5 AIKCVVVGDGAVG-KTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLIC 83 (186)
T ss_dssp EEEEEEECSTTSS-HHHHHHHHHHSSCCSSCCCCSCCEEEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEE
T ss_pred EEEEEEECCCCCC-HHHHHHHHHcCCCCCCcCCcccceeEEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEEE
Confidence 5799999999999 999999999999888899999888888888899999999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCccccc--CCCCCcccCHHHHHHHHHHhCCcEEEEeccCC
Q 028595 84 FSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKT 161 (207)
Q Consensus 84 ~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 161 (207)
||++++.++..+...|+..+....++.|+++|+||+|+.+...... .....+.+..+++..+++.++..+++++||++
T Consensus 84 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~ 163 (186)
T 1mh1_A 84 FSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALT 163 (186)
T ss_dssp EETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTT
T ss_pred EECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEecCCC
Confidence 9999999999984479988888777999999999999976421000 00011235788899999999876899999999
Q ss_pred CCCHHHHHHHHHHHHhCCCc
Q 028595 162 QQNVKAVFDAAIKVVIKPPQ 181 (207)
Q Consensus 162 ~~~i~~~f~~i~~~~~~~~~ 181 (207)
|.|++++|+++++.+.+++.
T Consensus 164 g~gi~~l~~~l~~~~~~~~~ 183 (186)
T 1mh1_A 164 QRGLKTVFDEAIRAVLCPPP 183 (186)
T ss_dssp CTTHHHHHHHHHHHHSCCCC
T ss_pred ccCHHHHHHHHHHHHhcccc
Confidence 99999999999999987754
No 15
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=100.00 E-value=2e-35 Score=215.77 Aligned_cols=176 Identities=69% Similarity=1.094 Sum_probs=136.0
Q ss_pred cceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEE
Q 028595 3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 82 (207)
Q Consensus 3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~ 82 (207)
..+||+++|.+++| ||||+++|.++.+...+.||+++.+...+.+++..+.+.+|||||++++..++..+++++|++++
T Consensus 7 ~~~ki~v~G~~~~G-Kssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 85 (182)
T 3bwd_D 7 RFIKCVTVGDGAVG-KTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFIL 85 (182)
T ss_dssp CCCEEEEECSTTSS-HHHHHHHHHHSCCC----------CBCCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEEE
T ss_pred ceEEEEEECCCCCC-HHHHHHHHhcCCCCCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEEE
Confidence 46899999999999 99999999999888888999988877667778888999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCCC
Q 028595 83 AFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQ 162 (207)
Q Consensus 83 v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~ 162 (207)
|||++++++++.+...|+..+....++.|+++|+||+|+.+.+......+....+..++++++++.++..+++++||++|
T Consensus 86 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~ 165 (182)
T 3bwd_D 86 AFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQ 165 (182)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEECCTTTC
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEEECCCC
Confidence 99999999999984479999988777899999999999976554211112223347888999999999669999999999
Q ss_pred CCHHHHHHHHHHHHhCC
Q 028595 163 QNVKAVFDAAIKVVIKP 179 (207)
Q Consensus 163 ~~i~~~f~~i~~~~~~~ 179 (207)
.|++++|+++++.++++
T Consensus 166 ~gi~~l~~~l~~~i~~~ 182 (182)
T 3bwd_D 166 ENVKGVFDAAIRVVLQP 182 (182)
T ss_dssp TTHHHHHHHHHHHHSCC
T ss_pred CCHHHHHHHHHHHHhcC
Confidence 99999999999988653
No 16
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.6e-34 Score=209.46 Aligned_cols=167 Identities=29% Similarity=0.442 Sum_probs=149.4
Q ss_pred ccceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEE
Q 028595 2 ELLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF 80 (207)
Q Consensus 2 ~~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ 80 (207)
+..+||+++|.+++| ||||+++|+++.+...+.++.+..+ ...+..++..+.+.+|||||++.+..++..+++++|++
T Consensus 7 ~~~~~i~v~G~~~~G-Kssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 85 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVG-KSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGV 85 (181)
T ss_dssp CEEEEEEEECCTTSC-HHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEE
T ss_pred CcceEEEEECCCCCC-HHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEE
Confidence 456899999999999 9999999999998888888988776 45778899999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccC
Q 028595 81 VLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK 160 (207)
Q Consensus 81 i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 160 (207)
++|||+++++++..+ ..|+..+....++.|+++|+||+|+.+.+.+ ..+++..++..+++ +++++||+
T Consensus 86 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~----------~~~~~~~~~~~~~~-~~~~~Sa~ 153 (181)
T 3tw8_B 86 IVVYDVTSAESFVNV-KRWLHEINQNCDDVCRILVGNKNDDPERKVV----------ETEDAYKFAGQMGI-QLFETSAK 153 (181)
T ss_dssp EEEEETTCHHHHHHH-HHHHHHHHHHCTTSEEEEEEECTTCGGGCCS----------CHHHHHHHHHHHTC-CEEECBTT
T ss_pred EEEEECCCHHHHHHH-HHHHHHHHHhCCCCCEEEEEECCCCchhccc----------CHHHHHHHHHHcCC-eEEEEECC
Confidence 999999999999999 7899999887789999999999999876653 78899999999998 99999999
Q ss_pred CCCCHHHHHHHHHHHHhCCCc
Q 028595 161 TQQNVKAVFDAAIKVVIKPPQ 181 (207)
Q Consensus 161 ~~~~i~~~f~~i~~~~~~~~~ 181 (207)
+|.|++++|+++.+.+...+.
T Consensus 154 ~~~gi~~l~~~l~~~~~~~~~ 174 (181)
T 3tw8_B 154 ENVNVEEMFNCITELVLRAKK 174 (181)
T ss_dssp TTBSHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHhh
Confidence 999999999999999876543
No 17
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=100.00 E-value=2.9e-34 Score=215.52 Aligned_cols=177 Identities=37% Similarity=0.688 Sum_probs=132.7
Q ss_pred cceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEE
Q 028595 3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 82 (207)
Q Consensus 3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~ 82 (207)
..+||+++|.+++| ||||+++|+++.+...+.||++..+...+.+++..+.+.+|||||++.+..++..+++++|++++
T Consensus 33 ~~~ki~vvG~~~vG-KSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 111 (214)
T 2j1l_A 33 RSVKVVLVGDGGCG-KTSLLMVFADGAFPESYTPTVFERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLL 111 (214)
T ss_dssp CEEEEEEEECTTSS-HHHHHHHHHC-------CCCCCEEEEEEEEETTEEEEEEEEEC---------------CEEEEEE
T ss_pred ceEEEEEECcCCCC-HHHHHHHHHcCCCCCCCCCccceeEEEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEEE
Confidence 35899999999999 99999999999988888999988888888899999999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCccccc--CCCCCcccCHHHHHHHHHHhCCcEEEEeccC
Q 028595 83 AFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSK 160 (207)
Q Consensus 83 v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 160 (207)
|||++++++++.+...|+..+....+++|+++|+||+|+.+...... .....+.+..++++.+++.++..+++++||+
T Consensus 112 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~ 191 (214)
T 2j1l_A 112 CFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSAR 191 (214)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECBTT
T ss_pred EEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEecCC
Confidence 99999999999985579999888778899999999999976532100 0011223578899999999997799999999
Q ss_pred CCCCHHHHHHHHHHHHhCCC
Q 028595 161 TQQNVKAVFDAAIKVVIKPP 180 (207)
Q Consensus 161 ~~~~i~~~f~~i~~~~~~~~ 180 (207)
+|.|++++|+++++.+.+.+
T Consensus 192 ~g~gi~el~~~l~~~~~~~~ 211 (214)
T 2j1l_A 192 LHDNVHAVFQEAAEVALSSR 211 (214)
T ss_dssp TTBSHHHHHHHHHHHHHHC-
T ss_pred CCCCHHHHHHHHHHHHHHhh
Confidence 99999999999999987654
No 18
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=100.00 E-value=1.7e-34 Score=214.86 Aligned_cols=166 Identities=27% Similarity=0.384 Sum_probs=141.3
Q ss_pred ccceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEE
Q 028595 2 ELLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF 80 (207)
Q Consensus 2 ~~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ 80 (207)
+..+||+++|.+++| ||||+++|.++.+...+.+|++..+ ...+.+++..+.+.+|||||++.+..++..+++++|++
T Consensus 27 ~~~~ki~vvG~~~vG-KSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~i 105 (201)
T 2hup_A 27 DFLFKLVLVGDASVG-KTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGA 105 (201)
T ss_dssp CEEEEEEEEECTTSS-HHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEE
T ss_pred ccceEEEEECcCCCC-HHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEE
Confidence 457899999999999 9999999999998888889988776 55788899899999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEecc
Q 028595 81 VLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSS 159 (207)
Q Consensus 81 i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa 159 (207)
|+|||++++++++.+ ..|+..+.... +++|+++|+||+|+.+.+.+ ..++++++++.+++.+++++||
T Consensus 106 ilv~D~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v----------~~~~~~~~~~~~~~~~~~~~SA 174 (201)
T 2hup_A 106 ILAYDITKRSSFLSV-PHWIEDVRKYAGSNIVQLLIGNKSDLSELREV----------SLAEAQSLAEHYDILCAIETSA 174 (201)
T ss_dssp EEEEETTBHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCGGGCCS----------CHHHHHHHHHHTTCSEEEECBT
T ss_pred EEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECCcccccccc----------CHHHHHHHHHHcCCCEEEEEeC
Confidence 999999999999998 78988887765 68999999999999876553 7889999999999778999999
Q ss_pred CCCCCHHHHHHHHHHHHhCC
Q 028595 160 KTQQNVKAVFDAAIKVVIKP 179 (207)
Q Consensus 160 ~~~~~i~~~f~~i~~~~~~~ 179 (207)
+++.|++++|+++++.+...
T Consensus 175 ~~g~gi~~l~~~l~~~i~~~ 194 (201)
T 2hup_A 175 KDSSNVEEAFLRVATELIMR 194 (201)
T ss_dssp TTTBSHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999988743
No 19
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=100.00 E-value=3.1e-34 Score=214.13 Aligned_cols=175 Identities=33% Similarity=0.596 Sum_probs=150.5
Q ss_pred cceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEE
Q 028595 3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 82 (207)
Q Consensus 3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~ 82 (207)
..+||+++|.+++| ||||+++|+++.+...+.||++..+...+.+++..+.+.+|||+|++.+..++..+++++|++|+
T Consensus 27 ~~~ki~vvG~~~vG-KSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~il 105 (205)
T 1gwn_A 27 VKCKIVVVGDSQCG-KTALLHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLI 105 (205)
T ss_dssp CEEEEEEEESTTSS-HHHHHHHHHHSCCCSSCCCCSEEEEEEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEEE
T ss_pred eeeEEEEECCCCCC-HHHHHHHHhcCCCCCCcCCccceeEEEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEEE
Confidence 46899999999999 99999999999998889999998887778888889999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCccccc--CCCCCcccCHHHHHHHHHHhCCcEEEEeccC
Q 028595 83 AFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSK 160 (207)
Q Consensus 83 v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 160 (207)
|||+++++++..+...|+..+....++.|+++|+||+|+.+...... .....+.+..++++++++.++..+|+++||+
T Consensus 106 v~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk 185 (205)
T 1gwn_A 106 CFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSAL 185 (205)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECCTT
T ss_pred EEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCEEEEeeec
Confidence 99999999999986689888888778999999999999975311000 0011233588899999999985599999999
Q ss_pred -CCCCHHHHHHHHHHHHhC
Q 028595 161 -TQQNVKAVFDAAIKVVIK 178 (207)
Q Consensus 161 -~~~~i~~~f~~i~~~~~~ 178 (207)
++.|++++|+.+++.++.
T Consensus 186 ~~~~gv~~lf~~l~~~~l~ 204 (205)
T 1gwn_A 186 QSENSVRDIFHVATLACVN 204 (205)
T ss_dssp TCHHHHHHHHHHHHHHHHH
T ss_pred cCCcCHHHHHHHHHHHHhh
Confidence 689999999999988764
No 20
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=2.9e-34 Score=213.66 Aligned_cols=164 Identities=27% Similarity=0.433 Sum_probs=148.3
Q ss_pred cceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEE
Q 028595 3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 81 (207)
Q Consensus 3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i 81 (207)
..+||+++|.+++| ||||+++|+++.+...+.+|++.++ ...+.+++..+.+.+|||||++.+..++..+++++|++|
T Consensus 25 ~~~ki~lvG~~~vG-KSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i 103 (201)
T 2ew1_A 25 FLFKIVLIGNAGVG-KTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALI 103 (201)
T ss_dssp EEEEEEEEESTTSS-HHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEE
T ss_pred cceEEEEECcCCCC-HHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEE
Confidence 46899999999999 9999999999998888889988776 557888999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccC
Q 028595 82 LAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK 160 (207)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 160 (207)
+|||++++++++.+ ..|+..+.... .++|+++|+||+|+.+.+.+ ..++++.+++..++ +++++||+
T Consensus 104 ~v~D~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~v----------~~~~~~~~~~~~~~-~~~~~Sa~ 171 (201)
T 2ew1_A 104 LTYDITCEESFRCL-PEWLREIEQYASNKVITVLVGNKIDLAERREV----------SQQRAEEFSEAQDM-YYLETSAK 171 (201)
T ss_dssp EEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECGGGGGGCSS----------CHHHHHHHHHHHTC-CEEECCTT
T ss_pred EEEECCCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECCCCcccccc----------CHHHHHHHHHHcCC-EEEEEeCC
Confidence 99999999999998 78988887765 57999999999999766553 78889999999998 99999999
Q ss_pred CCCCHHHHHHHHHHHHhCC
Q 028595 161 TQQNVKAVFDAAIKVVIKP 179 (207)
Q Consensus 161 ~~~~i~~~f~~i~~~~~~~ 179 (207)
+|.|++++|+++++.+...
T Consensus 172 ~g~gv~~l~~~l~~~i~~~ 190 (201)
T 2ew1_A 172 ESDNVEKLFLDLACRLISE 190 (201)
T ss_dssp TCTTHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHH
Confidence 9999999999999988753
No 21
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=100.00 E-value=1.1e-33 Score=210.91 Aligned_cols=164 Identities=27% Similarity=0.451 Sum_probs=148.6
Q ss_pred cceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEE
Q 028595 3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 81 (207)
Q Consensus 3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i 81 (207)
..+||+++|.+++| ||||+++|.++.+...+.+|++.++ ...+.+++..+.+.+|||||++.+..++..+++++|++|
T Consensus 7 ~~~ki~v~G~~~~G-KSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi 85 (206)
T 2bcg_Y 7 YLFKLLLIGNSGVG-KSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGII 85 (206)
T ss_dssp EEEEEEEEESTTSS-HHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEE
T ss_pred cceEEEEECCCCCC-HHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEEE
Confidence 46899999999999 9999999999998888889998777 457788999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccC
Q 028595 82 LAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK 160 (207)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 160 (207)
+|||++++.++..+ ..|+..+.... ++.|+++|+||+|+.+.+.+ ..++++.+++.+++ +++++||+
T Consensus 86 lv~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~----------~~~~~~~~~~~~~~-~~~~~Sa~ 153 (206)
T 2bcg_Y 86 IVYDVTDQESFNGV-KMWLQEIDRYATSTVLKLLVGNKCDLKDKRVV----------EYDVAKEFADANKM-PFLETSAL 153 (206)
T ss_dssp EEEETTCHHHHHHH-HHHHHHHHHHSCTTCEEEEEEECTTCTTTCCS----------CHHHHHHHHHHTTC-CEEECCTT
T ss_pred EEEECcCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECCCCcccccc----------CHHHHHHHHHHcCC-eEEEEeCC
Confidence 99999999999999 78988887665 67999999999999876553 78889999999998 99999999
Q ss_pred CCCCHHHHHHHHHHHHhCC
Q 028595 161 TQQNVKAVFDAAIKVVIKP 179 (207)
Q Consensus 161 ~~~~i~~~f~~i~~~~~~~ 179 (207)
+|.|++++|.++++.+...
T Consensus 154 ~g~gi~~l~~~l~~~i~~~ 172 (206)
T 2bcg_Y 154 DSTNVEDAFLTMARQIKES 172 (206)
T ss_dssp TCTTHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHH
Confidence 9999999999999988643
No 22
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.6e-34 Score=214.00 Aligned_cols=163 Identities=23% Similarity=0.337 Sum_probs=144.7
Q ss_pred cceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEE
Q 028595 3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 82 (207)
Q Consensus 3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~ 82 (207)
..+||+++|.+++| ||||+++|.++.+...+.||.+..+...+..++..+.+.+|||||++.+..++..+++++|++++
T Consensus 7 ~~~ki~vvG~~~~G-KSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 85 (199)
T 2gf0_A 7 NDYRVVVFGAGGVG-KSSLVLRFVKGTFRDTYIPTIEDTYRQVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFIL 85 (199)
T ss_dssp CCEEEEEEECTTSS-HHHHHHHHHHSCCCCTTSCCCCEEEEEEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEEE
T ss_pred CeeEEEEECCCCCc-HHHHHHHHHcCCCCCcccCccccceeEEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEEE
Confidence 35799999999999 99999999999888888899888887778889999999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhcC---CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEecc
Q 028595 83 AFSLVSRASYENVLKKWIPELQHYS---PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSS 159 (207)
Q Consensus 83 v~d~~~~~s~~~~~~~~~~~i~~~~---~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa 159 (207)
|||+++++++..+ ..|+..+.... ++.|+++|+||+|+.+.. +..++++.+++.+++ +++++||
T Consensus 86 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~-~~~~~Sa 152 (199)
T 2gf0_A 86 VFSVTSKQSLEEL-GPIYKLIVQIKGSVEDIPVMLVGNKCDETQRE-----------VDTREAQAVAQEWKC-AFMETSA 152 (199)
T ss_dssp EEETTCHHHHHTT-HHHHHHHHHHHSCGGGSCEEEEEECTTCSSCS-----------SCHHHHHHHHHHHTC-EEEECBT
T ss_pred EEECcCHHHHHHH-HHHHHHHHHHhcCCCCCCEEEEEECccCCccc-----------cCHHHHHHHHHHhCC-eEEEEec
Confidence 9999999999988 66766665432 478999999999997532 377889999999998 9999999
Q ss_pred CCCCCHHHHHHHHHHHHhCC
Q 028595 160 KTQQNVKAVFDAAIKVVIKP 179 (207)
Q Consensus 160 ~~~~~i~~~f~~i~~~~~~~ 179 (207)
++|.|++++|+++++.+..+
T Consensus 153 ~~~~gi~~l~~~l~~~~~~~ 172 (199)
T 2gf0_A 153 KMNYNVKELFQELLTLETRR 172 (199)
T ss_dssp TTTBSHHHHHHHHHHHCSSS
T ss_pred CCCCCHHHHHHHHHHHHhhh
Confidence 99999999999999988755
No 23
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=100.00 E-value=1.5e-33 Score=209.56 Aligned_cols=175 Identities=40% Similarity=0.700 Sum_probs=151.7
Q ss_pred cceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEE
Q 028595 3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 82 (207)
Q Consensus 3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~ 82 (207)
..+||+++|.+++| ||||+++|.++.+...+.||++..+...+.+++..+.+.+|||||++.+..++..+++++|++++
T Consensus 24 ~~~ki~vvG~~~~G-KSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 102 (201)
T 2gco_A 24 IRKKLVIVGDGACG-KTCLLIVFSKDQFPEVYVPTVFENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILM 102 (201)
T ss_dssp EEEEEEEEESTTSS-HHHHHHHHHHSSCCSSCCCSSCCCCEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEE
T ss_pred cceEEEEECCCCCC-HHHHHHHHHhCcCCcccCCcccceEEEEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEEE
Confidence 36799999999999 99999999999988889999998887778889999999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCccccc--CCCCCcccCHHHHHHHHHHhCCcEEEEeccC
Q 028595 83 AFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSK 160 (207)
Q Consensus 83 v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 160 (207)
|||+++++++..+...|+..+....++.|+++|+||+|+.+...... .....+.+..++++.+++.++..+++++||+
T Consensus 103 v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~ 182 (201)
T 2gco_A 103 CFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAK 182 (201)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEECCTT
T ss_pred EEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEeeCC
Confidence 99999999999986688888888778999999999999976521100 0011123578899999999997789999999
Q ss_pred CCCCHHHHHHHHHHHHhC
Q 028595 161 TQQNVKAVFDAAIKVVIK 178 (207)
Q Consensus 161 ~~~~i~~~f~~i~~~~~~ 178 (207)
+|.|++++|+++++.+++
T Consensus 183 ~g~gi~~l~~~i~~~~l~ 200 (201)
T 2gco_A 183 TKEGVREVFEMATRAGLQ 200 (201)
T ss_dssp TCTTHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHhc
Confidence 999999999999988764
No 24
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=100.00 E-value=7.3e-34 Score=205.18 Aligned_cols=164 Identities=27% Similarity=0.430 Sum_probs=140.7
Q ss_pred ccceeEEEEecccccceeeeeeeccCCCCCccccCceeeeee-eEEEECCeEEEEEEEeCCCCccccccccceecCCcEE
Q 028595 2 ELLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF 80 (207)
Q Consensus 2 ~~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ 80 (207)
+..+||+++|.+++| ||||+++|+++.+...+.+|.+..+. ..+.+++..+.+.+|||||++.+..++..+++++|++
T Consensus 4 ~~~~~i~v~G~~~~G-Kssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ 82 (170)
T 1z08_A 4 AYSFKVVLLGEGCVG-KTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGA 82 (170)
T ss_dssp CEEEEEEEECCTTSC-HHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEE
T ss_pred CcceEEEEECcCCCC-HHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEE
Confidence 356899999999999 99999999999888888899887774 5777888899999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEecc
Q 028595 81 VLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSS 159 (207)
Q Consensus 81 i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa 159 (207)
++|||++++++++.+ ..|+..+.... +++|+++|+||+|+.+.+.+ ..++++.+++.++. +++++||
T Consensus 83 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~----------~~~~~~~~~~~~~~-~~~~~Sa 150 (170)
T 1z08_A 83 ILVYDITDEDSFQKV-KNWVKELRKMLGNEICLCIVGNKIDLEKERHV----------SIQEAESYAESVGA-KHYHTSA 150 (170)
T ss_dssp EEEEETTCHHHHHHH-HHHHHHHHHHHGGGSEEEEEEECGGGGGGCCS----------CHHHHHHHHHHTTC-EEEEEBT
T ss_pred EEEEECcCHHHHHHH-HHHHHHHHHhcCCCCeEEEEEECccccccccc----------CHHHHHHHHHHcCC-eEEEecC
Confidence 999999999999998 78888876654 57999999999999876553 78899999999997 9999999
Q ss_pred CCCCCHHHHHHHHHHHHhC
Q 028595 160 KTQQNVKAVFDAAIKVVIK 178 (207)
Q Consensus 160 ~~~~~i~~~f~~i~~~~~~ 178 (207)
++|.|++++|+++++.+.+
T Consensus 151 ~~~~gi~~l~~~l~~~~~~ 169 (170)
T 1z08_A 151 KQNKGIEELFLDLCKRMIE 169 (170)
T ss_dssp TTTBSHHHHHHHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHhh
Confidence 9999999999999998764
No 25
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=100.00 E-value=5.3e-34 Score=208.61 Aligned_cols=162 Identities=27% Similarity=0.393 Sum_probs=148.2
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEE
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA 83 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v 83 (207)
.+||+++|.+++| ||||+++|+++.+...+.+|.+..+...+.+++..+.+.+|||||++.+..++..+++++|++++|
T Consensus 18 ~~ki~v~G~~~~G-KSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v 96 (183)
T 3kkq_A 18 TYKLVVVGDGGVG-KSALTIQFFQKIFVDDYDPTIEDSYLKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIV 96 (183)
T ss_dssp EEEEEEECSTTSS-HHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEEE
T ss_pred ceEEEEECCCCCC-HHHHHHHHHhCCCCCCCCCCccceeEEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCEEEEE
Confidence 5799999999999 999999999999888999999988888888999999999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhc--CCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccC-
Q 028595 84 FSLVSRASYENVLKKWIPELQHY--SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK- 160 (207)
Q Consensus 84 ~d~~~~~s~~~~~~~~~~~i~~~--~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~- 160 (207)
||++++++++.+ ..|+..+... .+++|+++|+||+|+.+.+.+ ..++++.+++.+++ +++++||+
T Consensus 97 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~v----------~~~~~~~~~~~~~~-~~~~~Sa~~ 164 (183)
T 3kkq_A 97 YSVTDKASFEHV-DRFHQLILRVKDRESFPMILVANKVDLMHLRKV----------TRDQGKEMATKYNI-PYIETSAKD 164 (183)
T ss_dssp EETTCHHHHHTH-HHHHHHHHHHHTSSCCCEEEEEECTTCSTTCCS----------CHHHHHHHHHHHTC-CEEEEBCSS
T ss_pred EECCCHHHHHHH-HHHHHHHHHhcCCCCCcEEEEEECCCchhccCc----------CHHHHHHHHHHhCC-eEEEeccCC
Confidence 999999999999 7887777553 258999999999999876654 88999999999997 99999999
Q ss_pred CCCCHHHHHHHHHHHHhC
Q 028595 161 TQQNVKAVFDAAIKVVIK 178 (207)
Q Consensus 161 ~~~~i~~~f~~i~~~~~~ 178 (207)
++.|++++|+++++.+.+
T Consensus 165 ~~~~v~~l~~~l~~~i~~ 182 (183)
T 3kkq_A 165 PPLNVDKTFHDLVRVIRQ 182 (183)
T ss_dssp SCBSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhh
Confidence 999999999999988764
No 26
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=100.00 E-value=7.3e-34 Score=204.70 Aligned_cols=164 Identities=27% Similarity=0.400 Sum_probs=147.7
Q ss_pred ccceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEE
Q 028595 2 ELLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF 80 (207)
Q Consensus 2 ~~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ 80 (207)
+..+||+++|.+++| ||||+++|.++.+...+.+|.+.++ ...+.+++..+.+.+|||||++.+..++..+++++|++
T Consensus 3 ~~~~~i~v~G~~~~G-Kssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 81 (168)
T 1z2a_A 3 EVAIKMVVVGNGAVG-KSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQAC 81 (168)
T ss_dssp -CEEEEEEECSTTSS-HHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEE
T ss_pred ceeEEEEEECcCCCC-HHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEE
Confidence 567899999999999 9999999999988888889988666 55778888899999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccC
Q 028595 81 VLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK 160 (207)
Q Consensus 81 i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 160 (207)
++|||++++++++.+ ..|+..+....++.|+++|+||+|+.+.+.+ ..++++.+++.+++ +++++||+
T Consensus 82 i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~----------~~~~~~~~~~~~~~-~~~~~Sa~ 149 (168)
T 1z2a_A 82 VLVFSTTDRESFEAI-SSWREKVVAEVGDIPTALVQNKIDLLDDSCI----------KNEEAEGLAKRLKL-RFYRTSVK 149 (168)
T ss_dssp EEEEETTCHHHHHTH-HHHHHHHHHHHCSCCEEEEEECGGGGGGCSS----------CHHHHHHHHHHHTC-EEEECBTT
T ss_pred EEEEECcCHHHHHHH-HHHHHHHHHhCCCCCEEEEEECcccCccccc----------CHHHHHHHHHHcCC-eEEEEecC
Confidence 999999999999998 7788888765578999999999999876553 78889999999998 99999999
Q ss_pred CCCCHHHHHHHHHHHHhC
Q 028595 161 TQQNVKAVFDAAIKVVIK 178 (207)
Q Consensus 161 ~~~~i~~~f~~i~~~~~~ 178 (207)
++.|++++|+++.+.+.+
T Consensus 150 ~~~~i~~l~~~l~~~~~~ 167 (168)
T 1z2a_A 150 EDLNVSEVFKYLAEKHLQ 167 (168)
T ss_dssp TTBSSHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHhh
Confidence 999999999999998864
No 27
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=100.00 E-value=2.2e-33 Score=206.55 Aligned_cols=164 Identities=29% Similarity=0.520 Sum_probs=148.3
Q ss_pred ccceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEE
Q 028595 2 ELLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF 80 (207)
Q Consensus 2 ~~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ 80 (207)
+..+||+++|.+++| ||||+++|+++.+...+.+|.+.++ ...+..++..+.+.+|||||++.+..++..+++++|++
T Consensus 20 ~~~~ki~vvG~~~~G-KSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 98 (189)
T 2gf9_A 20 DYMFKLLLIGNSSVG-KTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGF 98 (189)
T ss_dssp SEEEEEEEECSTTSS-HHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEE
T ss_pred CceeEEEEECCCCCC-HHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEE
Confidence 457899999999999 9999999999998888889988777 45677888899999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEecc
Q 028595 81 VLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSS 159 (207)
Q Consensus 81 i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa 159 (207)
|+|||++++++++.+ ..|+..+.... ++.|+++|+||+|+.+.+.+ ..++++++++.+++ +++++||
T Consensus 99 i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~----------~~~~~~~~~~~~~~-~~~~~Sa 166 (189)
T 2gf9_A 99 LLMYDIANQESFAAV-QDWATQIKTYSWDNAQVILVGNKCDLEDERVV----------PAEDGRRLADDLGF-EFFEASA 166 (189)
T ss_dssp EEEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCGGGCCS----------CHHHHHHHHHHHTC-EEEECBT
T ss_pred EEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECcccccccCC----------CHHHHHHHHHHcCC-eEEEEEC
Confidence 999999999999998 78988887765 68999999999999776553 78899999999998 9999999
Q ss_pred CCCCCHHHHHHHHHHHHhC
Q 028595 160 KTQQNVKAVFDAAIKVVIK 178 (207)
Q Consensus 160 ~~~~~i~~~f~~i~~~~~~ 178 (207)
++|.|++++|+++++.+.+
T Consensus 167 ~~g~gi~~l~~~l~~~i~~ 185 (189)
T 2gf9_A 167 KENINVKQVFERLVDVICE 185 (189)
T ss_dssp TTTBSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 9999999999999998864
No 28
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=2.2e-33 Score=209.63 Aligned_cols=177 Identities=40% Similarity=0.679 Sum_probs=146.7
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEE
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA 83 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v 83 (207)
..||+++|.+++| ||||+++|+++.+...+.||++..+...+.+++..+.+.+|||||++.+..++..+++++|++++|
T Consensus 25 ~~ki~vvG~~~~G-KSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v 103 (207)
T 2fv8_A 25 RKKLVVVGDGACG-KTCLLIVFSKDEFPEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMC 103 (207)
T ss_dssp EEEEEEEECTTSS-HHHHHHHHHHSSCC-------CCEEEEEEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEEEE
T ss_pred CcEEEEECcCCCC-HHHHHHHHhcCCCCCcCCCcccceEEEEEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEEEE
Confidence 5799999999999 999999999999888888999888877788899999999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCccccc--CCCCCcccCHHHHHHHHHHhCCcEEEEeccCC
Q 028595 84 FSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKT 161 (207)
Q Consensus 84 ~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 161 (207)
||+++++++..+...|+..+....++.|+++|+||+|+.+...... .....+.+..+++..+++.++..+++++||++
T Consensus 104 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~ 183 (207)
T 2fv8_A 104 FSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKT 183 (207)
T ss_dssp EETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTT
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEeeCCC
Confidence 9999999999986688888888778999999999999976521100 00011235788899999999877899999999
Q ss_pred CCCHHHHHHHHHHHHhCCCc
Q 028595 162 QQNVKAVFDAAIKVVIKPPQ 181 (207)
Q Consensus 162 ~~~i~~~f~~i~~~~~~~~~ 181 (207)
|.|++++|+++++.++.++.
T Consensus 184 g~gi~el~~~l~~~i~~~~~ 203 (207)
T 2fv8_A 184 KEGVREVFETATRAALQKRY 203 (207)
T ss_dssp CTTHHHHHHHHHHHHHSCCC
T ss_pred CCCHHHHHHHHHHHHHHHhh
Confidence 99999999999999987643
No 29
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=100.00 E-value=9.3e-34 Score=208.09 Aligned_cols=161 Identities=20% Similarity=0.251 Sum_probs=140.8
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEE
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA 83 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v 83 (207)
.+||+++|.+++| ||||+++|+++.+...+.|| +..+...+.+++..+.+.+|||+|++.+. +++++|++++|
T Consensus 20 ~~ki~ivG~~~vG-KSsL~~~~~~~~~~~~~~~t-~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~i~v 92 (184)
T 3ihw_A 20 ELKVGIVGNLSSG-KSALVHRYLTGTYVQEESPE-GGRFKKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDAVVFV 92 (184)
T ss_dssp EEEEEEECCTTSC-HHHHHHHHHHSSCCCCCCTT-CEEEEEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSEEEEE
T ss_pred eeEEEEECCCCCC-HHHHHHHHhcCCCCCCcCCC-cceEEEEEEECCEEEEEEEEECCCChhhh-----eecCCCEEEEE
Confidence 5799999999999 99999999999988888888 45667888899999999999999999876 78889999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcC--CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCC
Q 028595 84 FSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT 161 (207)
Q Consensus 84 ~d~~~~~s~~~~~~~~~~~i~~~~--~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 161 (207)
||++++++++.+ ..|+..+.... +++|+++|+||+|+.+... +.+..++++++++.++..+|+++||++
T Consensus 93 ~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~--------~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 163 (184)
T 3ihw_A 93 FSLEDEISFQTV-YNYFLRLCSFRNASEVPMVLVGTQDAISAANP--------RVIDDSRARKLSTDLKRCTYYETCATY 163 (184)
T ss_dssp EETTCHHHHHHH-HHHHHHHHTTSCGGGSCEEEEEECTTCBTTBC--------CCSCHHHHHHHHHHTTTCEEEEEBTTT
T ss_pred EECcCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECcccccccc--------cccCHHHHHHHHHHcCCCeEEEecCCC
Confidence 999999999998 78998887764 5799999999999953211 124889999999999844999999999
Q ss_pred CCCHHHHHHHHHHHHhCCC
Q 028595 162 QQNVKAVFDAAIKVVIKPP 180 (207)
Q Consensus 162 ~~~i~~~f~~i~~~~~~~~ 180 (207)
|.|++++|+++++.+...+
T Consensus 164 ~~gv~~lf~~l~~~i~~~~ 182 (184)
T 3ihw_A 164 GLNVERVFQDVAQKVVALR 182 (184)
T ss_dssp TBTHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHHHh
Confidence 9999999999999887543
No 30
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=100.00 E-value=1.5e-33 Score=202.89 Aligned_cols=161 Identities=20% Similarity=0.297 Sum_probs=122.5
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEE
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA 83 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v 83 (207)
.+||+++|.+++| ||||+++|.+.... .+.++.+..+...+.+++..+.+.+||++|++.+..++..+++++|++++|
T Consensus 2 ~~ki~~vG~~~~G-KSsli~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v 79 (166)
T 3q72_A 2 VYKVLLLGAPGVG-KSALARIFGGVEDG-PEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIV 79 (166)
T ss_dssp CCEEEEEESTTSS-HHHHHHHHCCC-----------CEEEEEEEETTEEEEEEEEECC---------------CCEEEEE
T ss_pred eEEEEEECCCCCC-HHHHHHHHcCcccc-CCCCccccceEEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEE
Confidence 4799999999999 99999999977643 445677777777888999999999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcC--CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCC
Q 028595 84 FSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT 161 (207)
Q Consensus 84 ~d~~~~~s~~~~~~~~~~~i~~~~--~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 161 (207)
||++++++++.+ ..|+..+.... +++|+++|+||+|+.+.+.+ ..++++.++..+++ +++++||++
T Consensus 80 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~----------~~~~~~~~~~~~~~-~~~~~Sa~~ 147 (166)
T 3q72_A 80 YSVTDKGSFEKA-SELRVQLRRARQTDDVPIILVGNKSDLVRSREV----------SVDEGRACAVVFDC-KFIETSAAL 147 (166)
T ss_dssp EETTCHHHHHHH-HHHHHHHHHCC---CCCEEEEEECTTCCSSCCS----------CHHHHHHHHHHTTC-EEEECBGGG
T ss_pred EECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEecccccccccc----------CHHHHHHHHHHhCC-cEEEeccCC
Confidence 999999999999 77877776543 58999999999999877664 88999999999998 999999999
Q ss_pred CCCHHHHHHHHHHHHhC
Q 028595 162 QQNVKAVFDAAIKVVIK 178 (207)
Q Consensus 162 ~~~i~~~f~~i~~~~~~ 178 (207)
|.|++++|+++++.+..
T Consensus 148 ~~gi~~l~~~l~~~~~~ 164 (166)
T 3q72_A 148 HHNVQALFEGVVRQIRL 164 (166)
T ss_dssp TBSHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 99999999999988754
No 31
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=100.00 E-value=1.1e-33 Score=209.06 Aligned_cols=166 Identities=28% Similarity=0.469 Sum_probs=149.9
Q ss_pred cceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEE
Q 028595 3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 81 (207)
Q Consensus 3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i 81 (207)
..+||+++|.+++| ||||+++|+++.+...+.++.+.++ ...+.+++..+.+.+|||||++.+..++..+++++|++|
T Consensus 15 ~~~ki~v~G~~~~G-KSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 93 (196)
T 3tkl_A 15 YLFKLLLIGDSGVG-KSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 93 (196)
T ss_dssp EEEEEEEECSTTSS-HHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEE
T ss_pred cceEEEEECcCCCC-HHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEEE
Confidence 46899999999999 9999999999998888889988777 457888999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccC
Q 028595 82 LAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK 160 (207)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 160 (207)
+|||++++++++.+ ..|+..+.... ++.|+++|+||+|+.+.+.+ ..++++.+++.+++ +++++||+
T Consensus 94 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~~----------~~~~~~~~~~~~~~-~~~~~Sa~ 161 (196)
T 3tkl_A 94 VVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLTTKKVV----------DYTTAKEFADSLGI-PFLETSAK 161 (196)
T ss_dssp EEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCTTTCCS----------CHHHHHHHHHHTTC-CEEEECTT
T ss_pred EEEECcCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECccccccccc----------CHHHHHHHHHHcCC-cEEEEeCC
Confidence 99999999999999 78988887765 58999999999999877664 78899999999998 99999999
Q ss_pred CCCCHHHHHHHHHHHHhCCCc
Q 028595 161 TQQNVKAVFDAAIKVVIKPPQ 181 (207)
Q Consensus 161 ~~~~i~~~f~~i~~~~~~~~~ 181 (207)
+|.|++++|+++++.+.....
T Consensus 162 ~g~gv~~l~~~l~~~i~~~~~ 182 (196)
T 3tkl_A 162 NATNVEQSFMTMAAEIKKRMG 182 (196)
T ss_dssp TCTTHHHHHHHHHHHHHHHC-
T ss_pred CCCCHHHHHHHHHHHHHHHhc
Confidence 999999999999999875543
No 32
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=100.00 E-value=1e-33 Score=203.64 Aligned_cols=162 Identities=28% Similarity=0.421 Sum_probs=144.8
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEE
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA 83 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v 83 (207)
.+||+++|.+++| ||||+++|.++.+...+.+|.+..+...+.+++..+.+.+|||||++.+..++..+++++|++++|
T Consensus 4 ~~~i~v~G~~~~G-Kssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 82 (168)
T 1u8z_A 4 LHKVIMVGSGGVG-KSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCV 82 (168)
T ss_dssp EEEEEEECSTTSS-HHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEE
T ss_pred eEEEEEECCCCCC-HHHHHHHHHhCccCCCCCCCcceEEEEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEEE
Confidence 5799999999999 999999999999888889999888887888899999999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcC--CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCC
Q 028595 84 FSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT 161 (207)
Q Consensus 84 ~d~~~~~s~~~~~~~~~~~i~~~~--~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 161 (207)
||+++++++..+ ..|+..+.... .+.|+++|+||+|+.+.+.+ ..++++.+++.+++ +++++||++
T Consensus 83 ~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~----------~~~~~~~~~~~~~~-~~~~~Sa~~ 150 (168)
T 1u8z_A 83 FSITEMESFAAT-ADFREQILRVKEDENVPFLLVGNKSDLEDKRQV----------SVEEAKNRADQWNV-NYVETSAKT 150 (168)
T ss_dssp EETTCHHHHHHH-HHHHHHHHHHHCCTTSCEEEEEECGGGGGGCCS----------CHHHHHHHHHHHTC-EEEECCTTT
T ss_pred EECCCHHHHHHH-HHHHHHHHHhcCCCCCcEEEEEECccccccCcc----------CHHHHHHHHHHcCC-eEEEeCCCC
Confidence 999999999998 78888776654 38999999999999876553 78899999999998 999999999
Q ss_pred CCCHHHHHHHHHHHHhC
Q 028595 162 QQNVKAVFDAAIKVVIK 178 (207)
Q Consensus 162 ~~~i~~~f~~i~~~~~~ 178 (207)
|.|++++|+++++.+.+
T Consensus 151 ~~gi~~l~~~l~~~i~~ 167 (168)
T 1u8z_A 151 RANVDKVFFDLMREIRA 167 (168)
T ss_dssp CTTHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 99999999999998764
No 33
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=100.00 E-value=1.1e-33 Score=203.58 Aligned_cols=162 Identities=23% Similarity=0.393 Sum_probs=145.3
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEE
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA 83 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v 83 (207)
.+||+++|.+++| ||||+++|.++.+...+.+|.+..+...+.+++..+.+.+|||||++.+..++..+++++|++++|
T Consensus 3 ~~ki~v~G~~~~G-Kssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v 81 (167)
T 1c1y_A 3 EYKLVVLGSGGVG-KSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALV 81 (167)
T ss_dssp EEEEEEECSTTSS-HHHHHHHHHHCCCCCSCCCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEE
T ss_pred eeEEEEECCCCCC-HHHHHHHHHcCCCCCCCCCCccceEEEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEE
Confidence 4799999999999 999999999999888899999988887888888899999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhc--CCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCC
Q 028595 84 FSLVSRASYENVLKKWIPELQHY--SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT 161 (207)
Q Consensus 84 ~d~~~~~s~~~~~~~~~~~i~~~--~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 161 (207)
||+++++++..+ ..|+..+... .++.|+++|+||+|+.+.+.+ ..++++.+++.++..+++++||++
T Consensus 82 ~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~----------~~~~~~~~~~~~~~~~~~~~Sa~~ 150 (167)
T 1c1y_A 82 YSITAQSTFNDL-QDLREQILRVKDTEDVPMILVGNKCDLEDERVV----------GKEQGQNLARQWCNCAFLESSAKS 150 (167)
T ss_dssp EETTCHHHHHTH-HHHHHHHHHHHCCSCCCEEEEEECTTCGGGCCS----------CHHHHHHHHHHTTSCEEEECBTTT
T ss_pred EECCCHHHHHHH-HHHHHHHHHhhCcCCCcEEEEEECccccccccC----------CHHHHHHHHHHccCCcEEEecCCC
Confidence 999999999998 6787777654 258999999999999876653 788999999998434999999999
Q ss_pred CCCHHHHHHHHHHHHh
Q 028595 162 QQNVKAVFDAAIKVVI 177 (207)
Q Consensus 162 ~~~i~~~f~~i~~~~~ 177 (207)
|.|++++|+++++.+.
T Consensus 151 ~~gi~~l~~~l~~~i~ 166 (167)
T 1c1y_A 151 KINVNEIFYDLVRQIN 166 (167)
T ss_dssp TBSHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHh
Confidence 9999999999998774
No 34
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=8e-34 Score=209.58 Aligned_cols=166 Identities=25% Similarity=0.380 Sum_probs=147.5
Q ss_pred ccceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEE
Q 028595 2 ELLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF 80 (207)
Q Consensus 2 ~~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ 80 (207)
+..+||+++|.+++| ||||+++|+++.+...+.+|.+.++ ...+.+++..+.+.+|||||++.+..++..+++++|++
T Consensus 21 ~~~~ki~vvG~~~~G-KSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~i 99 (192)
T 2fg5_A 21 IRELKVCLLGDTGVG-KSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAA 99 (192)
T ss_dssp CEEEEEEEEECTTSS-HHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEE
T ss_pred CCceEEEEECcCCCC-HHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCEE
Confidence 457899999999999 9999999999998888889998777 44677788899999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEecc
Q 028595 81 VLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSS 159 (207)
Q Consensus 81 i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa 159 (207)
|+|||++++++++.+ ..|+..+.... +++|+++|+||+|+.+.+.+ ..++++++++.+++ +++++||
T Consensus 100 ilV~d~~~~~s~~~~-~~~~~~i~~~~~~~~piiiv~NK~Dl~~~~~v----------~~~~~~~~~~~~~~-~~~~~Sa 167 (192)
T 2fg5_A 100 VIVYDITKQDSFYTL-KKWVKELKEHGPENIVMAIAGNKCDLSDIREV----------PLKDAKEYAESIGA-IVVETSA 167 (192)
T ss_dssp EEEEETTCTHHHHHH-HHHHHHHHHHSCTTCEEEEEEECGGGGGGCCS----------CHHHHHHHHHTTTC-EEEECBT
T ss_pred EEEEeCCCHHHHHHH-HHHHHHHHHhCCCCCcEEEEEECccccccccc----------CHHHHHHHHHHcCC-EEEEEeC
Confidence 999999999999999 78988887765 58999999999999765553 78899999999997 9999999
Q ss_pred CCCCCHHHHHHHHHHHHhCCC
Q 028595 160 KTQQNVKAVFDAAIKVVIKPP 180 (207)
Q Consensus 160 ~~~~~i~~~f~~i~~~~~~~~ 180 (207)
+++.|++++|+++++.+.+.+
T Consensus 168 ~~~~gi~~l~~~l~~~i~~~~ 188 (192)
T 2fg5_A 168 KNAINIEELFQGISRQIPPLD 188 (192)
T ss_dssp TTTBSHHHHHHHHHHTCC---
T ss_pred CCCcCHHHHHHHHHHHHHhhC
Confidence 999999999999998876543
No 35
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=100.00 E-value=2e-33 Score=204.96 Aligned_cols=164 Identities=31% Similarity=0.479 Sum_probs=146.1
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEE
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 82 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~ 82 (207)
.+||+++|.+++| ||||+++|+++.+...+.+|++..+ ...+.+++..+.+.+|||||++.+..++..+++++|++|+
T Consensus 12 ~~ki~v~G~~~~G-KSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~ 90 (181)
T 2efe_B 12 NAKLVLLGDVGAG-KSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAII 90 (181)
T ss_dssp EEEEEEECCTTSC-HHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSEEEE
T ss_pred ceEEEEECcCCCC-HHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCEEEE
Confidence 5799999999999 9999999999998888888888776 4577788889999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCC
Q 028595 83 AFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT 161 (207)
Q Consensus 83 v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 161 (207)
|||++++.+++.+ ..|+..+.... +++|+++|+||+|+.+.+.+ ..++++.+++.+++ +++++||++
T Consensus 91 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~----------~~~~~~~~~~~~~~-~~~~~Sa~~ 158 (181)
T 2efe_B 91 VFDVTNQASFERA-KKWVQELQAQGNPNMVMALAGNKSDLLDARKV----------TAEDAQTYAQENGL-FFMETSAKT 158 (181)
T ss_dssp EEETTCHHHHHHH-HHHHHHHHHHSCTTCEEEEEEECTTCTTTCCS----------CHHHHHHHHHHTTC-EEEECCSSS
T ss_pred EEECCCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECCcccccccC----------CHHHHHHHHHHcCC-EEEEEECCC
Confidence 9999999999998 78888887665 68999999999999766553 78899999999998 999999999
Q ss_pred CCCHHHHHHHHHHHHhCCC
Q 028595 162 QQNVKAVFDAAIKVVIKPP 180 (207)
Q Consensus 162 ~~~i~~~f~~i~~~~~~~~ 180 (207)
|.|++++|+++++.+...+
T Consensus 159 g~gi~~l~~~l~~~~~~~~ 177 (181)
T 2efe_B 159 ATNVKEIFYEIARRLPRVQ 177 (181)
T ss_dssp CTTHHHHHHHHHHTCC---
T ss_pred CCCHHHHHHHHHHHHHhcC
Confidence 9999999999998886554
No 36
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=100.00 E-value=7.4e-34 Score=208.25 Aligned_cols=165 Identities=23% Similarity=0.378 Sum_probs=147.9
Q ss_pred ccceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEE
Q 028595 2 ELLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF 80 (207)
Q Consensus 2 ~~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ 80 (207)
+..+||+++|.+++| ||||+++|+++.+...+.+|.+..+ ...+.+++..+.+.+|||||++.+..++..+++++|++
T Consensus 8 ~~~~ki~v~G~~~~G-KSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 86 (186)
T 2bme_A 8 DFLFKFLVIGNAGTG-KSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGA 86 (186)
T ss_dssp SEEEEEEEEESTTSS-HHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEE
T ss_pred ccceEEEEECCCCCC-HHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEE
Confidence 346899999999999 9999999999998888889988666 55778899899999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEecc
Q 028595 81 VLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSS 159 (207)
Q Consensus 81 i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa 159 (207)
|+|||+++++++..+ ..|+..+.... +++|+++|+||+|+.+.+.+ ..++++.+++..++ +++++||
T Consensus 87 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~----------~~~~~~~~~~~~~~-~~~~~Sa 154 (186)
T 2bme_A 87 LLVYDITSRETYNAL-TNWLTDARMLASQNIVIILCGNKKDLDADREV----------TFLEASRFAQENEL-MFLETSA 154 (186)
T ss_dssp EEEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECGGGGGGCCS----------CHHHHHHHHHHTTC-EEEECCT
T ss_pred EEEEECcCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECccccccccc----------CHHHHHHHHHHcCC-EEEEecC
Confidence 999999999999998 78888776654 68999999999999766553 78889999999998 9999999
Q ss_pred CCCCCHHHHHHHHHHHHhCC
Q 028595 160 KTQQNVKAVFDAAIKVVIKP 179 (207)
Q Consensus 160 ~~~~~i~~~f~~i~~~~~~~ 179 (207)
++|.|++++|+++++.+.+.
T Consensus 155 ~~~~gi~~l~~~l~~~~~~~ 174 (186)
T 2bme_A 155 LTGENVEEAFVQCARKILNK 174 (186)
T ss_dssp TTCTTHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999988753
No 37
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=100.00 E-value=9.3e-34 Score=211.29 Aligned_cols=172 Identities=52% Similarity=0.835 Sum_probs=148.9
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEE
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA 83 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v 83 (207)
.+||+++|.+++| ||||+++|+++.+...+.+|.++.+...+.+++..+.+.+|||||++.+..++..+++++|++++|
T Consensus 30 ~~ki~vvG~~~~G-KSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v 108 (204)
T 4gzl_A 30 AIKCVVVGDGAVG-KTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLIC 108 (204)
T ss_dssp CEEEEEEESTTSS-HHHHHHHHHHSCCCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEE
T ss_pred eEEEEEECcCCCC-HHHHHHHHHhCCCCCCcCCeecceeEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEE
Confidence 5799999999999 999999999999888899999988888888899999999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCccccc--CCCCCcccCHHHHHHHHHHhCCcEEEEeccCC
Q 028595 84 FSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSKT 161 (207)
Q Consensus 84 ~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 161 (207)
||++++++++.+...|+..+....++.|+++|+||+|+.+...... .....+.+..+++..+++.++..+++++||++
T Consensus 109 ~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~ 188 (204)
T 4gzl_A 109 FSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALT 188 (204)
T ss_dssp EETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTT
T ss_pred EECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEEeeCCC
Confidence 9999999999995589999988778999999999999976543100 00112224788999999999987899999999
Q ss_pred CCCHHHHHHHHHHHH
Q 028595 162 QQNVKAVFDAAIKVV 176 (207)
Q Consensus 162 ~~~i~~~f~~i~~~~ 176 (207)
|.|++++|+++++.+
T Consensus 189 g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 189 QRGLKTVFDEAIRAV 203 (204)
T ss_dssp CTTHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHh
Confidence 999999999998765
No 38
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.2e-33 Score=212.00 Aligned_cols=166 Identities=25% Similarity=0.395 Sum_probs=140.8
Q ss_pred cceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEE
Q 028595 3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 81 (207)
Q Consensus 3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i 81 (207)
..+||+++|.+++| ||||+++|+++.+...+.+|++..+ ...+.+++..+.+.+|||||++.+..++..+++++|++|
T Consensus 12 ~~~ki~v~G~~~vG-KSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi 90 (223)
T 3cpj_B 12 LLFKIVLIGDSGVG-KSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGAL 90 (223)
T ss_dssp EEEEEEEESCTTSS-HHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEE
T ss_pred eeeEEEEECcCCCC-HHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEEE
Confidence 46899999999999 9999999999998888889988777 447788998999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccC
Q 028595 82 LAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK 160 (207)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 160 (207)
+|||++++.+++.+ ..|+..+.... +++|++||+||+|+.+.+.+ ..++++.+++.+++ +++++||+
T Consensus 91 lV~D~~~~~s~~~~-~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v----------~~~~~~~~~~~~~~-~~~~~Sa~ 158 (223)
T 3cpj_B 91 IVYDISKSSSYENC-NHWLSELRENADDNVAVGLIGNKSDLAHLRAV----------PTEESKTFAQENQL-LFTETSAL 158 (223)
T ss_dssp EEEC-CCHHHHHHH-HHHHHHHHHHCC--CEEEEEECCGGGGGGCCS----------CHHHHHHHHHHTTC-EEEECCCC
T ss_pred EEEeCCCHHHHHHH-HHHHHHHHHhCCCCCeEEEEEECccccccccc----------CHHHHHHHHHHcCC-EEEEEeCC
Confidence 99999999999998 78988887664 58999999999999876553 78889999999998 99999999
Q ss_pred CCCCHHHHHHHHHHHHhCCCc
Q 028595 161 TQQNVKAVFDAAIKVVIKPPQ 181 (207)
Q Consensus 161 ~~~~i~~~f~~i~~~~~~~~~ 181 (207)
++.|++++|+++++.+.....
T Consensus 159 ~~~gi~~l~~~l~~~i~~~~~ 179 (223)
T 3cpj_B 159 NSENVDKAFEELINTIYQKVS 179 (223)
T ss_dssp -CCCHHHHHHHHHHHHTTCC-
T ss_pred CCCCHHHHHHHHHHHHHHHhh
Confidence 999999999999999986544
No 39
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=100.00 E-value=1.6e-33 Score=204.83 Aligned_cols=164 Identities=23% Similarity=0.441 Sum_probs=147.2
Q ss_pred ccceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEE
Q 028595 2 ELLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF 80 (207)
Q Consensus 2 ~~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ 80 (207)
+..+||+++|.+++| ||||+++|.++.+...+.+|.+.++ ...+.+++..+.+.+|||||++.+..++..+++++|++
T Consensus 13 ~~~~~i~v~G~~~~G-KSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 91 (179)
T 1z0f_A 13 SYIFKYIIIGDMGVG-KSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGA 91 (179)
T ss_dssp SEEEEEEEECSTTSS-HHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEE
T ss_pred ccceEEEEECCCCCC-HHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCEE
Confidence 346899999999999 9999999999998888889988776 55677888899999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEecc
Q 028595 81 VLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSS 159 (207)
Q Consensus 81 i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa 159 (207)
++|||++++++++.+ ..|+..+.... ++.|+++|+||+|+.+.+.+ ..++++++++.+++ +++++||
T Consensus 92 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~----------~~~~~~~~~~~~~~-~~~~~Sa 159 (179)
T 1z0f_A 92 LMVYDITRRSTYNHL-SSWLTDARNLTNPNTVIILIGNKADLEAQRDV----------TYEEAKQFAEENGL-LFLEASA 159 (179)
T ss_dssp EEEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCGGGCCS----------CHHHHHHHHHHTTC-EEEECCT
T ss_pred EEEEeCcCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECccccccccc----------CHHHHHHHHHHcCC-EEEEEeC
Confidence 999999999999998 78888887665 68999999999999766553 78899999999998 9999999
Q ss_pred CCCCCHHHHHHHHHHHHhC
Q 028595 160 KTQQNVKAVFDAAIKVVIK 178 (207)
Q Consensus 160 ~~~~~i~~~f~~i~~~~~~ 178 (207)
++|.|++++|+++++.+.+
T Consensus 160 ~~~~gi~~l~~~l~~~i~~ 178 (179)
T 1z0f_A 160 KTGENVEDAFLEAAKKIYQ 178 (179)
T ss_dssp TTCTTHHHHHHHHHHHHC-
T ss_pred CCCCCHHHHHHHHHHHHhh
Confidence 9999999999999988754
No 40
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=100.00 E-value=7.4e-34 Score=206.95 Aligned_cols=158 Identities=20% Similarity=0.232 Sum_probs=136.8
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEE
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA 83 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v 83 (207)
.+||+++|.+++| ||||+++|+++.+.. +.||+++.+...+.+++..+.+.+|||+|+++ ..+++++|++|+|
T Consensus 7 ~~ki~~vG~~~vG-KTsli~~l~~~~~~~-~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~ilv 79 (178)
T 2iwr_A 7 ELRLGVLGDARSG-KSSLIHRFLTGSYQV-LEKTESEQYKKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVIFV 79 (178)
T ss_dssp EEEEEEECCGGGC-HHHHHHHHHHSCCCC-CSSCSSSEEEEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEEEE
T ss_pred ceEEEEECCCCCC-HHHHHHHHHhCCCCC-cCCCcceeEEEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEEEE
Confidence 5799999999999 999999999998876 78999988888888999999999999999987 4678899999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhc---C-CCCcEEEEeeCCCccc--CcccccCCCCCcccCHHHHHHHHHHhCCcEEEEe
Q 028595 84 FSLVSRASYENVLKKWIPELQHY---S-PGVPVVLVGTKLDLRE--DKHYLADHPGLVPVTTAQGEELRKQIGASYYIEC 157 (207)
Q Consensus 84 ~d~~~~~s~~~~~~~~~~~i~~~---~-~~~piivv~nK~D~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~ 157 (207)
||+++++++..+ ..|+..+... . +++|+++|+||+|+.+ .+. +..++++++++.++..+++++
T Consensus 80 ~D~~~~~s~~~~-~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~----------v~~~~~~~~~~~~~~~~~~~~ 148 (178)
T 2iwr_A 80 FSLEDENSFQAV-SRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRV----------VGDARARALXADMKRCSYYET 148 (178)
T ss_dssp EETTCHHHHHHH-HHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCC----------SCHHHHHHHHHHHSSEEEEEE
T ss_pred EECcCHHHHHHH-HHHHHHHHHHHhcCCCCCCEEEEEECccccccccCc----------CCHHHHHHHHHhhcCCeEEEE
Confidence 999999999999 6765555432 2 5899999999999953 333 488899999998854499999
Q ss_pred ccCCCCCHHHHHHHHHHHHhCC
Q 028595 158 SSKTQQNVKAVFDAAIKVVIKP 179 (207)
Q Consensus 158 Sa~~~~~i~~~f~~i~~~~~~~ 179 (207)
||++|.|++++|+++++.+...
T Consensus 149 Sa~~~~~i~~lf~~l~~~~~~~ 170 (178)
T 2iwr_A 149 XATYGLNVDRVFQEVAQKVVTL 170 (178)
T ss_dssp BTTTTBTHHHHHHHHHHHHHHH
T ss_pred eccccCCHHHHHHHHHHHHHHH
Confidence 9999999999999999988754
No 41
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=100.00 E-value=1.7e-33 Score=205.09 Aligned_cols=164 Identities=26% Similarity=0.399 Sum_probs=147.9
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEE
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA 83 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v 83 (207)
.+||+++|.+++| ||||+++|+++.+...+.+|.+..+...+.+++..+.+.+|||||++.+..++..+++++|++++|
T Consensus 9 ~~~i~v~G~~~~G-Kssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v 87 (181)
T 2fn4_A 9 THKLVVVGGGGVG-KSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLLV 87 (181)
T ss_dssp EEEEEEEECTTSS-HHHHHHHHHHSSCCSSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEEEE
T ss_pred ceEEEEECCCCCC-HHHHHHHHHhCcCccccCCCcCceEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEEEEE
Confidence 5799999999999 999999999999888999999988888888899999999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHH-hhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCC
Q 028595 84 FSLVSRASYENVLKKWIPEL-QHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT 161 (207)
Q Consensus 84 ~d~~~~~s~~~~~~~~~~~i-~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 161 (207)
||+++++++..+ ..|+..+ .... .+.|+++|+||+|+.+.+.+ ..++++.++...++ +++++||++
T Consensus 88 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v----------~~~~~~~~~~~~~~-~~~~~Sa~~ 155 (181)
T 2fn4_A 88 FAINDRQSFNEV-GKLFTQILRVKDRDDFPVVLVGNKADLESQRQV----------PRSEASAFGASHHV-AYFEASAKL 155 (181)
T ss_dssp EETTCHHHHHHH-HHHHHHHHHHHTSSCCCEEEEEECGGGGGGCCS----------CHHHHHHHHHHTTC-EEEECBTTT
T ss_pred EeCCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccccccccc----------CHHHHHHHHHHcCC-eEEEecCCC
Confidence 999999999998 6777766 3333 58999999999999876653 78889999999998 999999999
Q ss_pred CCCHHHHHHHHHHHHhCCC
Q 028595 162 QQNVKAVFDAAIKVVIKPP 180 (207)
Q Consensus 162 ~~~i~~~f~~i~~~~~~~~ 180 (207)
|.|++++|+++++.+.+.+
T Consensus 156 ~~gv~~l~~~l~~~~~~~~ 174 (181)
T 2fn4_A 156 RLNVDEAFEQLVRAVRKYQ 174 (181)
T ss_dssp TBSHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHhh
Confidence 9999999999999987544
No 42
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=100.00 E-value=1.3e-33 Score=209.21 Aligned_cols=166 Identities=22% Similarity=0.299 Sum_probs=141.5
Q ss_pred cceeEEEEecccccceeeeeeeccCCCCCccccCcee-eeeeeEEEECCeEEEEEEEeCCCCccccc-cccceecCCcEE
Q 028595 3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVF-DNFSANVVAEGTTVNLGLWDTAGQEDYNR-LRPLSYRGADVF 80 (207)
Q Consensus 3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~-~~~~~~~~~d~~ 80 (207)
..+||+++|.++|| ||||+++|++......+.|+.+ +.+...+.+++..+.+.+|||+|++.+.. ++..+++++|++
T Consensus 22 ~~~ki~vvG~~~vG-KSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~~ 100 (195)
T 3cbq_A 22 GIFKVMLVGESGVG-KSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAF 100 (195)
T ss_dssp CEEEEEEECSTTSS-HHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCSEE
T ss_pred cEEEEEEECCCCCC-HHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCCEE
Confidence 35799999999999 9999999986654444445554 34466788899999999999999998765 778889999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhcC--CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEec
Q 028595 81 VLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECS 158 (207)
Q Consensus 81 i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~S 158 (207)
|+|||+++++++..+ ..|+..+.... +++|+++||||+|+.+.+.+ ..++++.+++.+++ +++++|
T Consensus 101 ilv~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v----------~~~~~~~~a~~~~~-~~~e~S 168 (195)
T 3cbq_A 101 LIVFSVTDRRSFSKV-PETLLRLRAGRPHHDLPVILVGNKSDLARSREV----------SLEEGRHLAGTLSC-KHIETS 168 (195)
T ss_dssp EEEEETTCHHHHHTH-HHHHHHHHHHSTTSCCCEEEEEECTTCTTTCCS----------CHHHHHHHHHHTTC-EEEEEB
T ss_pred EEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEeechhccccCCc----------CHHHHHHHHHHhCC-EEEEEc
Confidence 999999999999999 78888887654 48999999999999876653 88899999999997 999999
Q ss_pred cCCCCCHHHHHHHHHHHHhCCCc
Q 028595 159 SKTQQNVKAVFDAAIKVVIKPPQ 181 (207)
Q Consensus 159 a~~~~~i~~~f~~i~~~~~~~~~ 181 (207)
|++|.|++++|+++++.+...+.
T Consensus 169 a~~~~~v~~lf~~l~~~i~~~~~ 191 (195)
T 3cbq_A 169 AALHHNTRELFEGAVRQIRLRRG 191 (195)
T ss_dssp TTTTBSHHHHHHHHHHHHHTTC-
T ss_pred CCCCCCHHHHHHHHHHHHHHhcC
Confidence 99999999999999999876543
No 43
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=100.00 E-value=2e-33 Score=207.25 Aligned_cols=163 Identities=25% Similarity=0.414 Sum_probs=143.3
Q ss_pred cceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEE
Q 028595 3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 81 (207)
Q Consensus 3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i 81 (207)
..+||+++|.+++| ||||+++|+++.+...+.+|++.++ ...+.+++..+.+.+|||||++.+..++..+++++|++|
T Consensus 20 ~~~ki~v~G~~~~G-KSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii 98 (191)
T 2a5j_A 20 YLFKYIIIGDTGVG-KSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGAL 98 (191)
T ss_dssp EEEEEEEESSTTSS-HHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEE
T ss_pred cceEEEEECcCCCC-HHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCEEE
Confidence 46899999999999 9999999999998888888888776 457888999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccC
Q 028595 82 LAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK 160 (207)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 160 (207)
+|||++++++++.+ ..|+..+.... ++.|+++|+||+|+.+.+.+ ..++++.+++.+++ +++++||+
T Consensus 99 ~v~d~~~~~s~~~~-~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~v----------~~~~~~~~~~~~~~-~~~~~Sa~ 166 (191)
T 2a5j_A 99 LVYDITRRETFNHL-TSWLEDARQHSSSNMVIMLIGNKSDLESRRDV----------KREEGEAFAREHGL-IFMETSAK 166 (191)
T ss_dssp EEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCGGGCCS----------CHHHHHHHHHHHTC-EEEEECTT
T ss_pred EEEECCCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECcccCCcccc----------CHHHHHHHHHHcCC-EEEEEeCC
Confidence 99999999999998 78888887654 68999999999999766553 78899999999998 99999999
Q ss_pred CCCCHHHHHHHHHHHHhC
Q 028595 161 TQQNVKAVFDAAIKVVIK 178 (207)
Q Consensus 161 ~~~~i~~~f~~i~~~~~~ 178 (207)
++.|++++|+++++.+.+
T Consensus 167 ~~~gi~~l~~~l~~~i~~ 184 (191)
T 2a5j_A 167 TACNVEEAFINTAKEIYR 184 (191)
T ss_dssp TCTTHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999999998864
No 44
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=100.00 E-value=7.3e-34 Score=206.78 Aligned_cols=166 Identities=20% Similarity=0.242 Sum_probs=145.5
Q ss_pred ccceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECC-eEEEEEEEeCCCCccccccccceecCCcE
Q 028595 2 ELLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEG-TTVNLGLWDTAGQEDYNRLRPLSYRGADV 79 (207)
Q Consensus 2 ~~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~-~~~~l~i~D~~G~~~~~~~~~~~~~~~d~ 79 (207)
...+||+++|.+++| ||||+++|+++.+...+.||++.++ ...+.+++ ..+.+.+|||||++.+..++..+++++|+
T Consensus 4 ~~~~ki~v~G~~~~G-Kssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 82 (178)
T 2hxs_A 4 MRQLKIVVLGDGASG-KTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQG 82 (178)
T ss_dssp CCEEEEEEECCTTSS-HHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSE
T ss_pred CceEEEEEECcCCCC-HHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCE
Confidence 456899999999999 9999999999988888888987555 55777776 68999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhcC---CCCc-EEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEE
Q 028595 80 FVLAFSLVSRASYENVLKKWIPELQHYS---PGVP-VVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYI 155 (207)
Q Consensus 80 ~i~v~d~~~~~s~~~~~~~~~~~i~~~~---~~~p-iivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 155 (207)
+++|||++++++++.+ ..|+..+.... +..| +++|+||+|+.+.+.+ ..++++.+++.+++ +++
T Consensus 83 ~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~~~~----------~~~~~~~~~~~~~~-~~~ 150 (178)
T 2hxs_A 83 VLLVYDITNYQSFENL-EDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTI----------KPEKHLRFCQENGF-SSH 150 (178)
T ss_dssp EEEEEETTCHHHHHTH-HHHHHHHHHHHHHHTCCCEEEEEEECGGGGGGCSS----------CHHHHHHHHHHHTC-EEE
T ss_pred EEEEEECCCHHHHHHH-HHHHHHHHHHhcccCCCCeEEEEEEcccccccccc----------CHHHHHHHHHHcCC-cEE
Confidence 9999999999999988 78888886643 2445 8999999999776553 78899999999998 999
Q ss_pred EeccCCCCCHHHHHHHHHHHHhCCC
Q 028595 156 ECSSKTQQNVKAVFDAAIKVVIKPP 180 (207)
Q Consensus 156 e~Sa~~~~~i~~~f~~i~~~~~~~~ 180 (207)
++||++|.|++++|+++++.+...+
T Consensus 151 ~~Sa~~~~gi~~l~~~l~~~~~~~~ 175 (178)
T 2hxs_A 151 FVSAKTGDSVFLCFQKVAAEILGIK 175 (178)
T ss_dssp EECTTTCTTHHHHHHHHHHHHTTCC
T ss_pred EEeCCCCCCHHHHHHHHHHHHHhhh
Confidence 9999999999999999999987654
No 45
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=100.00 E-value=2e-33 Score=202.61 Aligned_cols=162 Identities=29% Similarity=0.430 Sum_probs=145.2
Q ss_pred cceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEE
Q 028595 3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 81 (207)
Q Consensus 3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i 81 (207)
..+||+++|.+++| ||||+++|+++.+...+.++.+..+ ...+.+++..+.+.+||+||++.+..++..+++++|+++
T Consensus 5 ~~~~i~v~G~~~~G-Kssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i 83 (170)
T 1r2q_A 5 CQFKLVLLGESAVG-KSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAI 83 (170)
T ss_dssp EEEEEEEECSTTSS-HHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEE
T ss_pred ceEEEEEECCCCCC-HHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEE
Confidence 36799999999999 9999999999988888888888777 457778888999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccC
Q 028595 82 LAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK 160 (207)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 160 (207)
+|||+++++++..+ ..|+..+.... +++|+++|+||+|+.+.+.+ ..++++.+++..+. +++++||+
T Consensus 84 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~iilv~nK~Dl~~~~~~----------~~~~~~~~~~~~~~-~~~~~Sa~ 151 (170)
T 1r2q_A 84 VVYDITNEESFARA-KNWVKELQRQASPNIVIALSGNKADLANKRAV----------DFQEAQSYADDNSL-LFMETSAK 151 (170)
T ss_dssp EEEETTCHHHHHHH-HHHHHHHHHHSCTTCEEEEEEECGGGGGGCCS----------CHHHHHHHHHHTTC-EEEECCTT
T ss_pred EEEECCCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECccCcccccc----------CHHHHHHHHHHcCC-eEEEEeCC
Confidence 99999999999998 78888776654 68999999999999766553 77889999999998 99999999
Q ss_pred CCCCHHHHHHHHHHHHh
Q 028595 161 TQQNVKAVFDAAIKVVI 177 (207)
Q Consensus 161 ~~~~i~~~f~~i~~~~~ 177 (207)
+|.|++++|++|++.+.
T Consensus 152 ~g~gi~~l~~~i~~~~~ 168 (170)
T 1r2q_A 152 TSMNVNEIFMAIAKKLP 168 (170)
T ss_dssp TCTTHHHHHHHHHHTSC
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 99999999999988764
No 46
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=100.00 E-value=3.3e-33 Score=201.63 Aligned_cols=163 Identities=23% Similarity=0.378 Sum_probs=147.4
Q ss_pred ccceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEE
Q 028595 2 ELLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF 80 (207)
Q Consensus 2 ~~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ 80 (207)
+..+||+++|.+++| ||||+++|.++.+...+.|+.+.++ ...+.+++..+.+.+|||||++.+..++..+++++|++
T Consensus 4 ~~~~~i~v~G~~~~G-KSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~ 82 (170)
T 1z0j_A 4 LRELKVCLLGDTGVG-KSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAA 82 (170)
T ss_dssp EEEEEEEEECCTTSS-HHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEE
T ss_pred CcceEEEEECcCCCC-HHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEE
Confidence 346899999999999 9999999999998888889998777 45778888899999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEecc
Q 028595 81 VLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSS 159 (207)
Q Consensus 81 i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa 159 (207)
++|||++++.++..+ ..|+..+.... +..|+++|+||+|+.+.+++ ..++++.+++.++. +++++||
T Consensus 83 i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~v----------~~~~~~~~~~~~~~-~~~~~Sa 150 (170)
T 1z0j_A 83 IIVYDITKEETFSTL-KNWVRELRQHGPPSIVVAIAGNKCDLTDVREV----------MERDAKDYADSIHA-IFVETSA 150 (170)
T ss_dssp EEEEETTCHHHHHHH-HHHHHHHHHHSCTTSEEEEEEECTTCGGGCCS----------CHHHHHHHHHHTTC-EEEECBT
T ss_pred EEEEECcCHHHHHHH-HHHHHHHHHhCCCCCcEEEEEECCcccccccc----------CHHHHHHHHHHcCC-EEEEEeC
Confidence 999999999999998 78988887764 68999999999999876553 78889999999997 9999999
Q ss_pred CCCCCHHHHHHHHHHHHh
Q 028595 160 KTQQNVKAVFDAAIKVVI 177 (207)
Q Consensus 160 ~~~~~i~~~f~~i~~~~~ 177 (207)
+++.|++++|+++.+.+.
T Consensus 151 ~~~~~i~~l~~~i~~~i~ 168 (170)
T 1z0j_A 151 KNAININELFIEISRRIP 168 (170)
T ss_dssp TTTBSHHHHHHHHHHHCC
T ss_pred CCCcCHHHHHHHHHHHHh
Confidence 999999999999998764
No 47
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=1.9e-33 Score=210.57 Aligned_cols=164 Identities=20% Similarity=0.274 Sum_probs=136.3
Q ss_pred cceeEEEEecccccceeeeeeeccCCC--CCccccCceeeeeeeEEEECCeEEEEEEEeCCCCcc-ccccccceecCCcE
Q 028595 3 LLAKLACLFATQVTSFLLYVLSVSGRS--SIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED-YNRLRPLSYRGADV 79 (207)
Q Consensus 3 ~~~ki~iiG~~~~GgKssli~~l~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~-~~~~~~~~~~~~d~ 79 (207)
..+||+++|.++|| ||||+++|++.. +...+.++..+.+...+.+++..+.+.+|||+|++. +..+...+++.+|+
T Consensus 36 ~~~kVvlvG~~~vG-KSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~ 114 (211)
T 2g3y_A 36 TYYRVVLIGEQGVG-KSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDA 114 (211)
T ss_dssp CEEEEEEECCTTSS-HHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCSE
T ss_pred CceEEEEECCCCCC-HHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhCCE
Confidence 35899999999999 999999999654 344444433344566788899999999999999887 56677888999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhcC--CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEe
Q 028595 80 FVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIEC 157 (207)
Q Consensus 80 ~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~ 157 (207)
+|+|||++++++|+.+ ..|...+.... +++|+++||||+|+.+.+.+ ..++++.++..+++ +|+++
T Consensus 115 ~ilVydvt~~~sf~~~-~~~~~~l~~~~~~~~~piilVgNK~DL~~~r~v----------~~~e~~~~a~~~~~-~~~e~ 182 (211)
T 2g3y_A 115 YLIVYSITDRASFEKA-SELRIQLRRARQTEDIPIILVGNKSDLVRCREV----------SVSEGRACAVVFDC-KFIET 182 (211)
T ss_dssp EEEEEETTCHHHHHHH-HHHHHHHHTSGGGTTSCEEEEEECTTCGGGCCS----------CHHHHHHHHHHHTC-EEEEC
T ss_pred EEEEEECCCHHHHHHH-HHHHHHHHHHhCCCCCcEEEEEEChHHhcCceE----------eHHHHHHHHHHcCC-EEEEE
Confidence 9999999999999998 67877776532 58999999999999766553 77888999999998 99999
Q ss_pred ccCCCCCHHHHHHHHHHHHhCC
Q 028595 158 SSKTQQNVKAVFDAAIKVVIKP 179 (207)
Q Consensus 158 Sa~~~~~i~~~f~~i~~~~~~~ 179 (207)
||++|.||+++|+++++.+...
T Consensus 183 SAk~g~~v~elf~~l~~~i~~~ 204 (211)
T 2g3y_A 183 SAAVQHNVKELFEGIVRQVRLR 204 (211)
T ss_dssp BTTTTBSHHHHHHHHHHHHHHH
T ss_pred eCCCCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999988543
No 48
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=100.00 E-value=8.8e-34 Score=210.76 Aligned_cols=165 Identities=25% Similarity=0.405 Sum_probs=137.6
Q ss_pred ccceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEE
Q 028595 2 ELLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF 80 (207)
Q Consensus 2 ~~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ 80 (207)
+..+||+++|.+++| ||||+++|+++.+...+.+|++.++ ...+.+++..+.+.+|||||++.+..++..+++++|++
T Consensus 23 ~~~~ki~v~G~~~~G-KSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~ 101 (200)
T 2o52_A 23 DFLFKFLVIGSAGTG-KSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGA 101 (200)
T ss_dssp CEEEEEEEEESTTSS-HHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEE
T ss_pred CcceEEEEECcCCCC-HHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEE
Confidence 456899999999999 9999999999998888889988666 55777889899999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEecc
Q 028595 81 VLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSS 159 (207)
Q Consensus 81 i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa 159 (207)
|+|||++++++++.+ ..|+..+.... +++|+++|+||+|+.+.+.+ ..++++.+++..++ +++++||
T Consensus 102 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v----------~~~~~~~~~~~~~~-~~~~~SA 169 (200)
T 2o52_A 102 LLVYDITSRETYNSL-AAWLTDARTLASPNIVVILCGNKKDLDPEREV----------TFLEASRFAQENEL-MFLETSA 169 (200)
T ss_dssp EEEEETTCHHHHHTH-HHHHHHHHHHTCTTCEEEEEEECGGGGGGCCS----------CHHHHHHHHHHTTC-EEEEECT
T ss_pred EEEEECcCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECCCccccccc----------CHHHHHHHHHHcCC-EEEEEeC
Confidence 999999999999998 78888876654 68999999999999766553 77889999999998 9999999
Q ss_pred CCCCCHHHHHHHHHHHHhCC
Q 028595 160 KTQQNVKAVFDAAIKVVIKP 179 (207)
Q Consensus 160 ~~~~~i~~~f~~i~~~~~~~ 179 (207)
++|.|++++|.++++.+...
T Consensus 170 ~~g~gi~~l~~~l~~~i~~~ 189 (200)
T 2o52_A 170 LTGENVEEAFLKCARTILNK 189 (200)
T ss_dssp TTCTTHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999988753
No 49
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=6e-33 Score=202.25 Aligned_cols=166 Identities=27% Similarity=0.483 Sum_probs=139.1
Q ss_pred ccceeEEEEecccccceeeeeeeccCCCCC-ccccCceeeeeee-EEEECCeEEEEEEEeCCCCccccccccceecCCcE
Q 028595 2 ELLAKLACLFATQVTSFLLYVLSVSGRSSI-WDYIPTVFDNFSA-NVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADV 79 (207)
Q Consensus 2 ~~~~ki~iiG~~~~GgKssli~~l~~~~~~-~~~~~t~~~~~~~-~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~ 79 (207)
+..+||+++|.+++| ||||+++|+++.+. ..+.+|.+..+.. .+.+++..+.+.+|||||++.+..++..+++++|+
T Consensus 8 ~~~~~i~v~G~~~~G-Kssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ 86 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVG-KTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHA 86 (180)
T ss_dssp SEEEEEEEECSTTSS-HHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSE
T ss_pred CcceEEEEECcCCCC-HHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCCE
Confidence 346899999999999 99999999998874 4677888877744 56789999999999999999999999999999999
Q ss_pred EEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEec
Q 028595 80 FVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECS 158 (207)
Q Consensus 80 ~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~S 158 (207)
+++|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.+.+.+ ..++++.+++.+++ +++++|
T Consensus 87 ii~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~----------~~~~~~~~~~~~~~-~~~~~S 154 (180)
T 2g6b_A 87 LLLLYDVTNKASFDNI-QAWLTEIHEYAQHDVALMLLGNKVDSAHERVV----------KREDGEKLAKEYGL-PFMETS 154 (180)
T ss_dssp EEEEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECCSTTSCCCS----------CHHHHHHHHHHHTC-CEEECC
T ss_pred EEEEEECCCHHHHHHH-HHHHHHHHHhCCCCCcEEEEEECcccCccccc----------CHHHHHHHHHHcCC-eEEEEe
Confidence 9999999999999998 78888887765 58999999999999876653 78889999999998 999999
Q ss_pred cCCCCCHHHHHHHHHHHHhCCC
Q 028595 159 SKTQQNVKAVFDAAIKVVIKPP 180 (207)
Q Consensus 159 a~~~~~i~~~f~~i~~~~~~~~ 180 (207)
|+++.|++++|+++.+.+....
T Consensus 155 a~~~~gi~~l~~~l~~~~~~~~ 176 (180)
T 2g6b_A 155 AKTGLNVDLAFTAIAKELKRRS 176 (180)
T ss_dssp TTTCTTHHHHHHHHHHHHHC--
T ss_pred CCCCCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999987653
No 50
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=100.00 E-value=2.3e-33 Score=202.45 Aligned_cols=163 Identities=21% Similarity=0.310 Sum_probs=129.9
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCCccccCcee-eeeeeEEEECCeEEEEEEEeCCCCccccc-cccceecCCcEEE
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVF-DNFSANVVAEGTTVNLGLWDTAGQEDYNR-LRPLSYRGADVFV 81 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~-~~~~~~~~~d~~i 81 (207)
.+||+++|.+++| ||||+++|.+......+.++.+ +.+...+.+++..+.+.+||++|++.+.. ++..+++++|+++
T Consensus 2 ~~ki~ivG~~~~G-KSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i 80 (169)
T 3q85_A 2 VFKVMLVGESGVG-KSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFL 80 (169)
T ss_dssp EEEEEEECSTTSS-HHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEE
T ss_pred cEEEEEECCCCCC-HHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEE
Confidence 4699999999999 9999999998776555444444 33466788899999999999999999876 7788899999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhcCC--CCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEecc
Q 028595 82 LAFSLVSRASYENVLKKWIPELQHYSP--GVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSS 159 (207)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~~i~~~~~--~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa 159 (207)
+|||++++++++.+ ..|+..+....+ ++|+++|+||+|+.+.+.+ ..++++.+++.+++ +++++||
T Consensus 81 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~----------~~~~~~~~~~~~~~-~~~~~Sa 148 (169)
T 3q85_A 81 IVFSVTDRRSFSKV-PETLLRLRAGRPHHDLPVILVGNKSDLARSREV----------SLEEGRHLAGTLSC-KHIETSA 148 (169)
T ss_dssp EEEETTCHHHHHTH-HHHHHHHHHHSTTSCCCEEEEEECTTCGGGCCS----------CHHHHHHHHHHTTC-EEEECBT
T ss_pred EEEECCChHHHHHH-HHHHHHHHhcccCCCCCEEEEeeCcchhhcccC----------CHHHHHHHHHHcCC-cEEEecC
Confidence 99999999999999 788887776553 8999999999999876654 88999999999998 9999999
Q ss_pred CCCCCHHHHHHHHHHHHhCC
Q 028595 160 KTQQNVKAVFDAAIKVVIKP 179 (207)
Q Consensus 160 ~~~~~i~~~f~~i~~~~~~~ 179 (207)
++|.|++++|+++++.+..+
T Consensus 149 ~~~~~v~~l~~~l~~~i~~~ 168 (169)
T 3q85_A 149 ALHHNTRELFEGAVRQIRLR 168 (169)
T ss_dssp TTTBSHHHHHHHHHHHHHHT
T ss_pred ccCCCHHHHHHHHHHHHHhc
Confidence 99999999999999987654
No 51
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=100.00 E-value=4.4e-33 Score=207.13 Aligned_cols=164 Identities=26% Similarity=0.507 Sum_probs=148.5
Q ss_pred ccceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEE
Q 028595 2 ELLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF 80 (207)
Q Consensus 2 ~~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ 80 (207)
+..+||+++|.+++| ||||+++|+++.+...+.+|.+.++ ...+..++..+.+.+|||||++.+..++..+++++|++
T Consensus 6 ~~~~ki~v~G~~~~G-KSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~i 84 (203)
T 1zbd_A 6 DYMFKILIIGNSSVG-KTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGF 84 (203)
T ss_dssp SEEEEEEEECSTTSS-HHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEE
T ss_pred ceeeEEEEECCCCCC-HHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEE
Confidence 457899999999999 9999999999998888889988777 45777888899999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEecc
Q 028595 81 VLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSS 159 (207)
Q Consensus 81 i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa 159 (207)
|+|||++++++++.+ ..|+..+.... ++.|+++|+||+|+.+.+.+ ..++++.+++.+++ +++++||
T Consensus 85 i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~----------~~~~~~~~~~~~~~-~~~~~Sa 152 (203)
T 1zbd_A 85 ILMYDITNEESFNAV-QDWSTQIKTYSWDNAQVLLVGNKCDMEDERVV----------SSERGRQLADHLGF-EFFEASA 152 (203)
T ss_dssp EEEEETTCHHHHHHH-HHHHHHHHHHSCSSCEEEEEEECTTCTTSCCS----------CHHHHHHHHHHHTC-EEEECBT
T ss_pred EEEEECcCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECcccCccccc----------CHHHHHHHHHHCCC-eEEEEEC
Confidence 999999999999998 78988887765 58999999999999776553 78899999999998 9999999
Q ss_pred CCCCCHHHHHHHHHHHHhC
Q 028595 160 KTQQNVKAVFDAAIKVVIK 178 (207)
Q Consensus 160 ~~~~~i~~~f~~i~~~~~~ 178 (207)
++|.|++++|+++++.+.+
T Consensus 153 ~~~~gi~~l~~~l~~~i~~ 171 (203)
T 1zbd_A 153 KDNINVKQTFERLVDVICE 171 (203)
T ss_dssp TTTBSSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 9999999999999988864
No 52
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=100.00 E-value=2.8e-33 Score=201.85 Aligned_cols=164 Identities=28% Similarity=0.422 Sum_probs=144.9
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEE
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 82 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~ 82 (207)
.+||+++|.+++| ||||+++|.++.+...+.||.+.++ ...+.+++..+.+.+|||||++.+..++..+++++|++++
T Consensus 3 ~~~i~v~G~~~~G-Kssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~ 81 (170)
T 1ek0_A 3 SIKLVLLGEAAVG-KSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALV 81 (170)
T ss_dssp EEEEEEECSTTSS-HHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEE
T ss_pred eEEEEEECCCCCC-HHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEE
Confidence 4799999999999 9999999999998888889988777 4577888999999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCC
Q 028595 83 AFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT 161 (207)
Q Consensus 83 v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 161 (207)
|||+++++++..+ ..|+..+.... ++.|+++|+||+|+.+... .+.+..++++.+++.+++ +++++||++
T Consensus 82 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~-------~~~v~~~~~~~~~~~~~~-~~~~~Sa~~ 152 (170)
T 1ek0_A 82 VYDVTKPQSFIKA-RHWVKELHEQASKDIIIALVGNKIDXLQEGG-------ERKVAREEGEKLAEEKGL-LFFETSAKT 152 (170)
T ss_dssp EEETTCHHHHHHH-HHHHHHHHHHSCTTCEEEEEEECGGGGGSSC-------CCCSCHHHHHHHHHHHTC-EEEECCTTT
T ss_pred EEecCChHHHHHH-HHHHHHHHHhcCCCCcEEEEEECCCcccccc-------ccCCCHHHHHHHHHHcCC-EEEEEeCCC
Confidence 9999999999998 78888877655 6899999999999976521 122478889999999998 999999999
Q ss_pred CCCHHHHHHHHHHHHh
Q 028595 162 QQNVKAVFDAAIKVVI 177 (207)
Q Consensus 162 ~~~i~~~f~~i~~~~~ 177 (207)
|.|++++|+++++.+.
T Consensus 153 ~~gi~~l~~~l~~~i~ 168 (170)
T 1ek0_A 153 GENVNDVFLGIGEKIP 168 (170)
T ss_dssp CTTHHHHHHHHHTTSC
T ss_pred CCCHHHHHHHHHHHHh
Confidence 9999999999987664
No 53
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=100.00 E-value=2.5e-33 Score=203.27 Aligned_cols=163 Identities=20% Similarity=0.280 Sum_probs=131.5
Q ss_pred ccceeEEEEecccccceeeeeeeccCCCCCccccCceeee-eeeEEEECCeEEEEEEEeCCCCcc--ccccccceecCCc
Q 028595 2 ELLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDN-FSANVVAEGTTVNLGLWDTAGQED--YNRLRPLSYRGAD 78 (207)
Q Consensus 2 ~~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~-~~~~~~~~~~~~~l~i~D~~G~~~--~~~~~~~~~~~~d 78 (207)
+..+||+++|.+++| ||||+++|+++.+...+. +.+.+ +...+.+++..+.+.+|||||++. +..+...+++.+|
T Consensus 2 ~~~~ki~i~G~~~vG-KSsl~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~ 79 (175)
T 2nzj_A 2 MALYRVVLLGDPGVG-KTSLASLFAGKQERDLHE-QLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGS 79 (175)
T ss_dssp CCEEEEEEECCTTSS-HHHHHHHHHCC-----CC-CSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCS
T ss_pred ceEEEEEEECCCCcc-HHHHHHHHhcCCCccccC-ccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCC
Confidence 346899999999999 999999999988765544 44434 466788899999999999999988 5667788899999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhhcC--CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEE
Q 028595 79 VFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIE 156 (207)
Q Consensus 79 ~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e 156 (207)
++++|||++++++++.+ ..|+..+.... +++|+++|+||+|+.+.+.+ ..++++.++..+++ ++++
T Consensus 80 ~~i~v~d~~~~~s~~~~-~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~~v----------~~~~~~~~~~~~~~-~~~~ 147 (175)
T 2nzj_A 80 AYVIVYSIADRGSFESA-SELRIQLRRTHQADHVPIILVGNKADLARCREV----------SVEEGRACAVVFDC-KFIE 147 (175)
T ss_dssp EEEEEEETTCHHHHHHH-HHHHHHHHHCC----CCEEEEEECTTCTTTCCS----------CHHHHHHHHHHHTS-EEEE
T ss_pred EEEEEEECCCHHHHHHH-HHHHHHHHHhhccCCCCEEEEEEChhhcccccc----------CHHHHHHHHHHcCC-eEEE
Confidence 99999999999999998 78888777653 58999999999999876653 78889999999998 9999
Q ss_pred eccCCCCCHHHHHHHHHHHHhC
Q 028595 157 CSSKTQQNVKAVFDAAIKVVIK 178 (207)
Q Consensus 157 ~Sa~~~~~i~~~f~~i~~~~~~ 178 (207)
+||++|.|++++|+++++.+..
T Consensus 148 ~Sa~~g~gi~~l~~~l~~~~~~ 169 (175)
T 2nzj_A 148 TSATLQHNVAELFEGVVRQLRL 169 (175)
T ss_dssp CBTTTTBSHHHHHHHHHHHHHH
T ss_pred EecCCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999998864
No 54
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=100.00 E-value=2.6e-33 Score=202.17 Aligned_cols=163 Identities=28% Similarity=0.463 Sum_probs=139.5
Q ss_pred cceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEE
Q 028595 3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 81 (207)
Q Consensus 3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i 81 (207)
..+||+++|.+++| ||||+++|.++.+...+.+|.+.++ ...+.+++..+.+.+|||||++.+..++..+++++|+++
T Consensus 2 ~~~~i~v~G~~~~G-Kssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i 80 (170)
T 1g16_A 2 SIMKILLIGDSGVG-KSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGII 80 (170)
T ss_dssp CEEEEEEEESTTSS-HHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEE
T ss_pred CceEEEEECcCCCC-HHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEE
Confidence 46899999999999 9999999999998888889988776 456777888899999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccC
Q 028595 82 LAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK 160 (207)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 160 (207)
+|||+++++++..+ ..|+..+.... ++.|+++|+||+|+.+ +. +..++++.+++.+++ +++++||+
T Consensus 81 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~-~~----------~~~~~~~~~~~~~~~-~~~~~Sa~ 147 (170)
T 1g16_A 81 LVYDITDERTFTNI-KQWFKTVNEHANDEAQLLLVGNKSDMET-RV----------VTADQGEALAKELGI-PFIESSAK 147 (170)
T ss_dssp EEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCTT-CC----------SCHHHHHHHHHHHTC-CEEECBTT
T ss_pred EEEECCCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECccCCc-Cc----------cCHHHHHHHHHHcCC-eEEEEECC
Confidence 99999999999998 78888887765 5899999999999943 33 377889999999998 99999999
Q ss_pred CCCCHHHHHHHHHHHHhCC
Q 028595 161 TQQNVKAVFDAAIKVVIKP 179 (207)
Q Consensus 161 ~~~~i~~~f~~i~~~~~~~ 179 (207)
+|.|++++|+++.+.+.++
T Consensus 148 ~~~gv~~l~~~l~~~~~~~ 166 (170)
T 1g16_A 148 NDDNVNEIFFTLAKLIQEK 166 (170)
T ss_dssp TTBSHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHH
Confidence 9999999999999988654
No 55
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=100.00 E-value=3.3e-33 Score=206.22 Aligned_cols=164 Identities=25% Similarity=0.399 Sum_probs=147.3
Q ss_pred ccceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEE
Q 028595 2 ELLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF 80 (207)
Q Consensus 2 ~~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ 80 (207)
+..+||+++|.+++| ||||+++|+++.+...+.+|++..+ ...+.+++..+.+.+|||||++.+..++..+++++|++
T Consensus 23 ~~~~ki~v~G~~~~G-KSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~v 101 (193)
T 2oil_A 23 NFVFKVVLIGESGVG-KTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGA 101 (193)
T ss_dssp SEEEEEEEESSTTSS-HHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEE
T ss_pred CcceEEEEECcCCCC-HHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEE
Confidence 346899999999999 9999999999998888889988777 45777888899999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEecc
Q 028595 81 VLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSS 159 (207)
Q Consensus 81 i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa 159 (207)
|+|||++++.++..+ ..|+..+.... .+.|+++|+||+|+.+.+.+ ..++++.+++..++ +++++||
T Consensus 102 i~v~D~~~~~s~~~~-~~~l~~i~~~~~~~~piilv~nK~Dl~~~~~~----------~~~~~~~~~~~~~~-~~~~~Sa 169 (193)
T 2oil_A 102 LLVFDLTKHQTYAVV-ERWLKELYDHAEATIVVMLVGNKSDLSQAREV----------PTEEARMFAENNGL-LFLETSA 169 (193)
T ss_dssp EEEEETTCHHHHHTH-HHHHHHHHTTSCTTCEEEEEEECGGGGGGCCS----------CHHHHHHHHHHTTC-EEEEECT
T ss_pred EEEEECCCHHHHHHH-HHHHHHHHHhcCCCCeEEEEEECCCccccccc----------CHHHHHHHHHHcCC-EEEEEeC
Confidence 999999999999998 78888887654 58999999999999776553 78889999999998 9999999
Q ss_pred CCCCCHHHHHHHHHHHHhC
Q 028595 160 KTQQNVKAVFDAAIKVVIK 178 (207)
Q Consensus 160 ~~~~~i~~~f~~i~~~~~~ 178 (207)
++|.|++++|+++++.+.+
T Consensus 170 ~~~~gi~~l~~~l~~~i~~ 188 (193)
T 2oil_A 170 LDSTNVELAFETVLKEIFA 188 (193)
T ss_dssp TTCTTHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 9999999999999998864
No 56
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.4e-33 Score=207.13 Aligned_cols=164 Identities=26% Similarity=0.444 Sum_probs=139.0
Q ss_pred cceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEE
Q 028595 3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 81 (207)
Q Consensus 3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i 81 (207)
..+||+++|.+++| ||||+++|+++.+...+.+|.+.++ ...+.+++..+.+.+|||||++.+..++..+++++|++|
T Consensus 25 ~~~ki~vvG~~~~G-KSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii 103 (192)
T 2il1_A 25 FKLQVIIIGSRGVG-KTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGII 103 (192)
T ss_dssp EEEEEEEECSTTSS-HHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSEEE
T ss_pred CceEEEEECCCCCC-HHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEEE
Confidence 46899999999999 9999999999998888888887666 557788898999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccC
Q 028595 82 LAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK 160 (207)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 160 (207)
+|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.+.+.+ ..++++.+++.++..+++++||+
T Consensus 104 lV~D~~~~~s~~~~-~~~~~~i~~~~~~~~piilV~NK~Dl~~~~~v----------~~~~~~~~~~~~~~~~~~~~SA~ 172 (192)
T 2il1_A 104 LVYDITKKETFDDL-PKWMKMIDKYASEDAELLLVGNKLDCETDREI----------TRQQGEKFAQQITGMRFCEASAK 172 (192)
T ss_dssp EEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECGGGGGGCCS----------CHHHHHHHHHTSTTCEEEECBTT
T ss_pred EEEECcCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECccccccccc----------CHHHHHHHHHhcCCCeEEEEeCC
Confidence 99999999999998 78988887765 58999999999999776653 78889999988633499999999
Q ss_pred CCCCHHHHHHHHHHHHhC
Q 028595 161 TQQNVKAVFDAAIKVVIK 178 (207)
Q Consensus 161 ~~~~i~~~f~~i~~~~~~ 178 (207)
+|.|++++|+++++.+.+
T Consensus 173 ~g~gi~~l~~~l~~~i~~ 190 (192)
T 2il1_A 173 DNFNVDEIFLKLVDDILK 190 (192)
T ss_dssp TTBSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999999988763
No 57
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=100.00 E-value=3.5e-33 Score=200.67 Aligned_cols=161 Identities=25% Similarity=0.424 Sum_probs=145.2
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEE
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA 83 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v 83 (207)
.+||+++|.+++| ||||++++.++.+...+.+|.+..+...+.+++..+.+.+|||||++.+..++..+++++|++++|
T Consensus 3 ~~~i~v~G~~~~G-KSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (167)
T 1kao_A 3 EYKVVVLGSGGVG-KSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILV 81 (167)
T ss_dssp EEEEEEECCTTSS-HHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred EEEEEEECCCCCC-HHHHHHHHHcCCCcccCCCCcceeEEEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEE
Confidence 5799999999999 999999999999888888999888878888999999999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcC--CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCC
Q 028595 84 FSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT 161 (207)
Q Consensus 84 ~d~~~~~s~~~~~~~~~~~i~~~~--~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 161 (207)
||++++++++.+ ..|...+.... ++.|+++|+||+|+.+.+.+ ..++++.+++.+++ +++++||++
T Consensus 82 ~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~----------~~~~~~~~~~~~~~-~~~~~Sa~~ 149 (167)
T 1kao_A 82 YSLVNQQSFQDI-KPMRDQIIRVKRYEKVPVILVGNKVDLESEREV----------SSSEGRALAEEWGC-PFMETSAKS 149 (167)
T ss_dssp EETTCHHHHHHH-HHHHHHHHHHTTTSCCCEEEEEECGGGGGGCCS----------CHHHHHHHHHHHTS-CEEEECTTC
T ss_pred EeCCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECCcccccccC----------CHHHHHHHHHHhCC-CEEEecCCC
Confidence 999999999998 67776665543 58999999999999766553 78889999999998 899999999
Q ss_pred CCCHHHHHHHHHHHHh
Q 028595 162 QQNVKAVFDAAIKVVI 177 (207)
Q Consensus 162 ~~~i~~~f~~i~~~~~ 177 (207)
|.|++++|+++++.+.
T Consensus 150 ~~gi~~l~~~l~~~~~ 165 (167)
T 1kao_A 150 KTMVDELFAEIVRQMN 165 (167)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHh
Confidence 9999999999998764
No 58
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=100.00 E-value=6.4e-33 Score=203.05 Aligned_cols=162 Identities=28% Similarity=0.423 Sum_probs=147.7
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEE
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA 83 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v 83 (207)
.+||+++|.+++| ||||+++|+++.+...+.+|.+..+...+.+++..+.+.+|||||++.+..++..+++++|++++|
T Consensus 18 ~~ki~v~G~~~~G-KSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 96 (187)
T 2a9k_A 18 LHKVIMVGSGGVG-KSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCV 96 (187)
T ss_dssp EEEEEEECSTTSS-HHHHHHHHHHSCCCCSCCTTCCEEEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEE
T ss_pred ceEEEEECCCCCC-HHHHHHHHhhCCCCCcCCCccceEEEEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEEEEE
Confidence 5799999999999 999999999999888899999988888888899999999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcC--CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCC
Q 028595 84 FSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT 161 (207)
Q Consensus 84 ~d~~~~~s~~~~~~~~~~~i~~~~--~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 161 (207)
||+++++++..+ ..|+..+.... .++|+++|+||+|+.+.+.+ ..++++.+++.+++ +++++||++
T Consensus 97 ~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~----------~~~~~~~~~~~~~~-~~~~~Sa~~ 164 (187)
T 2a9k_A 97 FSITEMESFAAT-ADFREQILRVKEDENVPFLLVGNKSDLEDKRQV----------SVEEAKNRAEQWNV-NYVETSAKT 164 (187)
T ss_dssp EETTCHHHHHHH-HHHHHHHHHHHCCTTCCEEEEEECGGGGGGCCS----------CHHHHHHHHHHTTC-EEEECCTTT
T ss_pred EECcCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccccccCcc----------CHHHHHHHHHHcCC-eEEEeCCCC
Confidence 999999999998 78887776654 38999999999999776553 78899999999998 999999999
Q ss_pred CCCHHHHHHHHHHHHhC
Q 028595 162 QQNVKAVFDAAIKVVIK 178 (207)
Q Consensus 162 ~~~i~~~f~~i~~~~~~ 178 (207)
+.|++++|+++++.+..
T Consensus 165 ~~gi~~l~~~l~~~i~~ 181 (187)
T 2a9k_A 165 RANVDKVFFDLMREIRA 181 (187)
T ss_dssp CTTHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 99999999999998864
No 59
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=3.3e-34 Score=211.40 Aligned_cols=165 Identities=27% Similarity=0.499 Sum_probs=149.3
Q ss_pred ccceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEE
Q 028595 2 ELLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF 80 (207)
Q Consensus 2 ~~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ 80 (207)
+..+||+++|.+++| ||||+++|+++.+...+.+|.+.++ ...+.+++..+.+.+|||||++.+..++..+++++|++
T Consensus 21 ~~~~ki~v~G~~~~G-KSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ 99 (191)
T 3dz8_A 21 DYMFKLLIIGNSSVG-KTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGF 99 (191)
T ss_dssp EECEEEEEEESTTSS-HHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEE
T ss_pred CeeeEEEEECCCCcC-HHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEE
Confidence 357899999999999 9999999999998888888888666 45777788889999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEecc
Q 028595 81 VLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSS 159 (207)
Q Consensus 81 i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa 159 (207)
++|||++++++++.+ ..|+..+.... +++|+++|+||+|+.+.+.+ ..++++.+++.+++ +++++||
T Consensus 100 i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~----------~~~~~~~~~~~~~~-~~~~~Sa 167 (191)
T 3dz8_A 100 ILMYDITNEESFNAV-QDWATQIKTYSWDNAQVILVGNKCDMEEERVV----------PTEKGQLLAEQLGF-DFFEASA 167 (191)
T ss_dssp EEEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCGGGCCS----------CHHHHHHHHHHHTC-EEEECBT
T ss_pred EEEEECcCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECCCCcccccc----------CHHHHHHHHHHcCC-eEEEEEC
Confidence 999999999999998 78999988766 68999999999999776654 88899999999998 9999999
Q ss_pred CCCCCHHHHHHHHHHHHhCC
Q 028595 160 KTQQNVKAVFDAAIKVVIKP 179 (207)
Q Consensus 160 ~~~~~i~~~f~~i~~~~~~~ 179 (207)
++|.|++++|+++++.+.+.
T Consensus 168 ~~~~gi~~l~~~l~~~i~~~ 187 (191)
T 3dz8_A 168 KENISVRQAFERLVDAICDK 187 (191)
T ss_dssp TTTBSHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999988654
No 60
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=3.3e-33 Score=206.87 Aligned_cols=161 Identities=29% Similarity=0.439 Sum_probs=146.0
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEE
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA 83 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v 83 (207)
.+||+++|.+++| ||||+++|+++.+...+.+|.+..+...+.+++..+.+.+|||||++. ..++..+++++|++++|
T Consensus 28 ~~ki~v~G~~~vG-KSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~iilv 105 (196)
T 2atv_A 28 EVKLAIFGRAGVG-KSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGFVLV 105 (196)
T ss_dssp CEEEEEECCTTSS-HHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEEEEE
T ss_pred ceEEEEECCCCCC-HHHHHHHHHhCCCCcccCCCCCceEEEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEEEEE
Confidence 5799999999999 999999999999988899999988887888899999999999999988 77888999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcC--CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCC
Q 028595 84 FSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT 161 (207)
Q Consensus 84 ~d~~~~~s~~~~~~~~~~~i~~~~--~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 161 (207)
||++++++++.+ ..|+..+.... +++|+++|+||+|+.+.+.+ ..++++.+++.+++ +++++||++
T Consensus 106 ~D~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~v----------~~~~~~~~~~~~~~-~~~~~Sa~~ 173 (196)
T 2atv_A 106 YDITDRGSFEEV-LPLKNILDEIKKPKNVTLILVGNKADLDHSRQV----------STEEGEKLATELAC-AFYECSACT 173 (196)
T ss_dssp EETTCHHHHHTH-HHHHHHHHHHHTTSCCCEEEEEECGGGGGGCCS----------CHHHHHHHHHHHTS-EEEECCTTT
T ss_pred EECcCHHHHHHH-HHHHHHHHHhhCCCCCcEEEEEECccccccccc----------CHHHHHHHHHHhCC-eEEEECCCc
Confidence 999999999998 77887776543 58999999999999876553 78899999999998 999999999
Q ss_pred CC-CHHHHHHHHHHHHhC
Q 028595 162 QQ-NVKAVFDAAIKVVIK 178 (207)
Q Consensus 162 ~~-~i~~~f~~i~~~~~~ 178 (207)
|. |++++|+++++.+.+
T Consensus 174 g~~gi~~l~~~l~~~i~~ 191 (196)
T 2atv_A 174 GEGNITEIFYELCREVRR 191 (196)
T ss_dssp CTTCHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHh
Confidence 99 999999999998864
No 61
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=100.00 E-value=4.5e-33 Score=205.77 Aligned_cols=164 Identities=20% Similarity=0.288 Sum_probs=133.3
Q ss_pred ceeEEEEecccccceeeeeeeccCC--CCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCcc-ccccccceecCCcEE
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGR--SSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED-YNRLRPLSYRGADVF 80 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~-~~~~~~~~~~~~d~~ 80 (207)
.+||+++|.++|| ||||+++|++. .+...+.++..+.+...+.+++..+.+.+|||+|++. ++.+...+++.+|++
T Consensus 6 ~~kv~lvG~~~vG-KSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~~ 84 (192)
T 2cjw_A 6 YYRVVLIGEQGVG-KSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDAY 84 (192)
T ss_dssp EEEEEEECSTTSS-HHHHHHHHHHHSCCC----GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSEE
T ss_pred eEEEEEECCCCCC-HHHHHHHHhcCcCCcCccccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCEE
Confidence 5799999999999 99999999853 3444444433344566788899999999999999876 566788889999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhcC--CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEec
Q 028595 81 VLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECS 158 (207)
Q Consensus 81 i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~S 158 (207)
++|||++++++++.+ ..|...+.... +++|+++|+||+|+.+.+.+ ..++++.++..+++ +|+++|
T Consensus 85 i~v~dv~~~~s~~~~-~~~~~~l~~~~~~~~~piilV~NK~Dl~~~r~v----------~~~~~~~~a~~~~~-~~~e~S 152 (192)
T 2cjw_A 85 LIVYSITDRASFEKA-SELRIQLRRARQTEDIPIILVGNKSDLVRXREV----------SVSEGRAXAVVFDX-KFIETS 152 (192)
T ss_dssp EEEEETTCHHHHHHH-HHHHHHHHHHTTTSCCCEEEEEECTTCGGGCCS----------CHHHHHHHHHHTTC-EEEECB
T ss_pred EEEEECCCHHHHHHH-HHHHHHHHHhhCCCCCeEEEEEechhhhccccc----------cHHHHHHHHHHhCC-ceEEec
Confidence 999999999999998 77877776542 57999999999999765543 77888899998987 999999
Q ss_pred cCCCCCHHHHHHHHHHHHhCCC
Q 028595 159 SKTQQNVKAVFDAAIKVVIKPP 180 (207)
Q Consensus 159 a~~~~~i~~~f~~i~~~~~~~~ 180 (207)
|++|.||+++|+++++.+....
T Consensus 153 A~~g~~v~~lf~~l~~~~~~~~ 174 (192)
T 2cjw_A 153 AAVQHNVKELFEGIVRQVRLRR 174 (192)
T ss_dssp TTTTBSHHHHHHHHHHHHHHHH
T ss_pred cccCCCHHHHHHHHHHHHHhhc
Confidence 9999999999999999886443
No 62
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=100.00 E-value=4.5e-33 Score=207.44 Aligned_cols=164 Identities=26% Similarity=0.426 Sum_probs=142.1
Q ss_pred cceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEE
Q 028595 3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 81 (207)
Q Consensus 3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i 81 (207)
..+||+++|.+++| ||||+++|+++.+...+.+|++.++ ...+.+++..+.+.+|||||++.+..++..+++++|++|
T Consensus 7 ~~~ki~v~G~~~~G-KSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 85 (207)
T 1vg8_A 7 VLLKVIILGDSGVG-KTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCV 85 (207)
T ss_dssp CEEEEEEECCTTSS-HHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEE
T ss_pred cceEEEEECcCCCC-HHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEEE
Confidence 46899999999999 9999999999998888889987666 557777888899999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhcC-----CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEE
Q 028595 82 LAFSLVSRASYENVLKKWIPELQHYS-----PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIE 156 (207)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~~i~~~~-----~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e 156 (207)
+|||++++.++..+ ..|+..+.... ++.|+++|+||+|+.+ +. +..++++.+++.....++++
T Consensus 86 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-~~----------~~~~~~~~~~~~~~~~~~~~ 153 (207)
T 1vg8_A 86 LVFDVTAPNTFKTL-DSWRDEFLIQASPRDPENFPFVVLGNKIDLEN-RQ----------VATKRAQAWCYSKNNIPYFE 153 (207)
T ss_dssp EEEETTCHHHHHTH-HHHHHHHHHHHCCSSGGGSCEEEEEECTTSSC-CC----------SCHHHHHHHHHHTTSCCEEE
T ss_pred EEEECCCHHHHHHH-HHHHHHHHHhcccccCCCCcEEEEEECCCCcc-cc----------cCHHHHHHHHHhcCCceEEE
Confidence 99999999999998 78877765443 4789999999999973 33 37788888988443338999
Q ss_pred eccCCCCCHHHHHHHHHHHHhCC
Q 028595 157 CSSKTQQNVKAVFDAAIKVVIKP 179 (207)
Q Consensus 157 ~Sa~~~~~i~~~f~~i~~~~~~~ 179 (207)
+||++|.|++++|++|++.+...
T Consensus 154 ~Sa~~g~gi~~l~~~l~~~~~~~ 176 (207)
T 1vg8_A 154 TSAKEAINVEQAFQTIARNALKQ 176 (207)
T ss_dssp CBTTTTBSHHHHHHHHHHHHHHH
T ss_pred EeCCCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999999988643
No 63
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=100.00 E-value=4.8e-33 Score=206.51 Aligned_cols=169 Identities=25% Similarity=0.374 Sum_probs=136.8
Q ss_pred cceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEE
Q 028595 3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 81 (207)
Q Consensus 3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i 81 (207)
..+||+++|.+++| ||||+++|+++.+...+.+|.+.++ ...+.+++..+.+.+|||||++.+..++..+++++|++|
T Consensus 27 ~~~ki~v~G~~~~G-KSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii 105 (199)
T 2p5s_A 27 KAYKIVLAGDAAVG-KSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGVL 105 (199)
T ss_dssp -CEEEEEESSTTSS-HHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSEEE
T ss_pred CCeEEEEECcCCCC-HHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCEEE
Confidence 46899999999999 9999999999998888889988776 457888999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccC
Q 028595 82 LAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK 160 (207)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 160 (207)
+|||++++.++..+ ..|+..+.... +++|+++|+||+|+.+.... ...+.+..++++.+++.+++ +++++||+
T Consensus 106 lv~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~----~~~~~v~~~~~~~~~~~~~~-~~~~~SA~ 179 (199)
T 2p5s_A 106 LLYDVTCEKSFLNI-REWVDMIEDAAHETVPIMLVGNKADIRDTAAT----EGQKCVPGHFGEKLAMTYGA-LFCETSAK 179 (199)
T ss_dssp EEEETTCHHHHHTH-HHHHHHHHHHC---CCEEEEEECGGGHHHHHH----TTCCCCCHHHHHHHHHHHTC-EEEECCTT
T ss_pred EEEECCChHHHHHH-HHHHHHHHHhcCCCCCEEEEEECccccccccc----ccccccCHHHHHHHHHHcCC-eEEEeeCC
Confidence 99999999999998 78988887665 58999999999999632110 01122578899999999998 99999999
Q ss_pred CCCCHHHHHHHHHHHHhC
Q 028595 161 TQQNVKAVFDAAIKVVIK 178 (207)
Q Consensus 161 ~~~~i~~~f~~i~~~~~~ 178 (207)
+|.|++++|.++++.+.+
T Consensus 180 ~g~gv~el~~~l~~~i~~ 197 (199)
T 2p5s_A 180 DGSNIVEAVLHLAREVKK 197 (199)
T ss_dssp TCTTHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHHHHh
Confidence 999999999999998754
No 64
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=2.1e-32 Score=201.87 Aligned_cols=163 Identities=26% Similarity=0.490 Sum_probs=147.0
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEE
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 82 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~ 82 (207)
.+||+++|.+++| ||||+++|+++.+...+.+|.+.++ ...+.+++..+.+.+|||||++.+..++..+++++|++|+
T Consensus 15 ~~~i~v~G~~~~G-Kssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~ 93 (195)
T 1x3s_A 15 TLKILIIGESGVG-KSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVIL 93 (195)
T ss_dssp EEEEEEECSTTSS-HHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEE
T ss_pred ceEEEEECCCCCC-HHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEEEE
Confidence 5799999999999 9999999999998888889988776 4577889999999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhcC--CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccC
Q 028595 83 AFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK 160 (207)
Q Consensus 83 v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 160 (207)
|||++++.++..+ ..|+..+.... +++|+++|+||+|+.+. . +..+++..+++.+++ +++++||+
T Consensus 94 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~-~----------~~~~~~~~~~~~~~~-~~~~~Sa~ 160 (195)
T 1x3s_A 94 VYDVTRRDTFVKL-DNWLNELETYCTRNDIVNMLVGNKIDKENR-E----------VDRNEGLKFARKHSM-LFIEASAK 160 (195)
T ss_dssp EEETTCHHHHHTH-HHHHHHHTTCCSCSCCEEEEEEECTTSSSC-C----------SCHHHHHHHHHHTTC-EEEECCTT
T ss_pred EEECcCHHHHHHH-HHHHHHHHHhcCcCCCcEEEEEECCcCccc-c----------cCHHHHHHHHHHcCC-EEEEecCC
Confidence 9999999999998 78988887765 57999999999999533 2 377889999999998 99999999
Q ss_pred CCCCHHHHHHHHHHHHhCCC
Q 028595 161 TQQNVKAVFDAAIKVVIKPP 180 (207)
Q Consensus 161 ~~~~i~~~f~~i~~~~~~~~ 180 (207)
++.|++++|+++++.+.+.+
T Consensus 161 ~~~gi~~l~~~l~~~~~~~~ 180 (195)
T 1x3s_A 161 TCDGVQCAFEELVEKIIQTP 180 (195)
T ss_dssp TCTTHHHHHHHHHHHHHTSG
T ss_pred CCCCHHHHHHHHHHHHHhhh
Confidence 99999999999999998664
No 65
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=100.00 E-value=6e-33 Score=200.49 Aligned_cols=164 Identities=24% Similarity=0.362 Sum_probs=144.7
Q ss_pred cceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEE
Q 028595 3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 82 (207)
Q Consensus 3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~ 82 (207)
..+||+++|.+++| ||||+++|+++.+...+.+|.+..+...+..++..+.+.+|||||++.+..++..+++++|++++
T Consensus 2 ~~~~i~v~G~~~~G-Kssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~ 80 (172)
T 2erx_A 2 NDYRVAVFGAGGVG-KSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFIL 80 (172)
T ss_dssp CEEEEEEECCTTSS-HHHHHHHHHTCCCCSSCCCCSCEEEEEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEE
T ss_pred CceEEEEECCCCCC-HHHHHHHHHcCCCCCCCCCCccccEEEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEE
Confidence 35799999999999 99999999999988888899888887777888889999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhcC---CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEecc
Q 028595 83 AFSLVSRASYENVLKKWIPELQHYS---PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSS 159 (207)
Q Consensus 83 v~d~~~~~s~~~~~~~~~~~i~~~~---~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa 159 (207)
|||++++++++.+ ..|+..+.+.. ++.|+++|+||+|+.+.+.+ ..++++.+++.+++ +++++||
T Consensus 81 v~d~~~~~~~~~~-~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v----------~~~~~~~~~~~~~~-~~~~~Sa 148 (172)
T 2erx_A 81 VYSITSRQSLEEL-KPIYEQICEIKGDVESIPIMLVGNKCDESPSREV----------QSSEAEALARTWKC-AFMETSA 148 (172)
T ss_dssp EEETTCHHHHHTT-HHHHHHHHHHHC---CCCEEEEEECGGGGGGCCS----------CHHHHHHHHHHHTC-EEEECBT
T ss_pred EEECcCHHHHHHH-HHHHHHHHHHhCCCCCCCEEEEEEcccccccccc----------CHHHHHHHHHHhCC-eEEEecC
Confidence 9999999999988 67776665532 57999999999999876653 77888999999998 9999999
Q ss_pred CCCCCHHHHHHHHHHHHhCC
Q 028595 160 KTQQNVKAVFDAAIKVVIKP 179 (207)
Q Consensus 160 ~~~~~i~~~f~~i~~~~~~~ 179 (207)
++|.|++++|+++++.+..+
T Consensus 149 ~~~~gi~~l~~~l~~~~~~~ 168 (172)
T 2erx_A 149 KLNHNVKELFQELLNLEKRR 168 (172)
T ss_dssp TTTBSHHHHHHHHHHTCCSS
T ss_pred CCCcCHHHHHHHHHHHHhhh
Confidence 99999999999999876543
No 66
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=100.00 E-value=1e-32 Score=200.61 Aligned_cols=162 Identities=30% Similarity=0.422 Sum_probs=144.4
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEE
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 82 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~ 82 (207)
.+||+++|.+++| ||||+++|+++.+...+.+|.+.++ ...+.+++..+.+.+|||||++.+..++..+++++|++++
T Consensus 14 ~~~i~v~G~~~~G-Kssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~ 92 (179)
T 2y8e_A 14 KFKLVFLGEQSVG-KTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVV 92 (179)
T ss_dssp EEEEEEEESTTSS-HHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEEE
T ss_pred ceEEEEECCCCCC-HHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEEE
Confidence 4799999999999 9999999999988888888888665 5577889999999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCC
Q 028595 83 AFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT 161 (207)
Q Consensus 83 v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 161 (207)
|||++++.++..+ ..|+..+.... +++|+++|+||+|+.+.+.+ ..++++.+++.++. +++++||++
T Consensus 93 v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~~~~~~----------~~~~~~~~~~~~~~-~~~~~Sa~~ 160 (179)
T 2y8e_A 93 VYDITNTNSFHQT-SKWIDDVRTERGSDVIIMLVGNKTDLSDKRQV----------STEEGERKAKELNV-MFIETSAKA 160 (179)
T ss_dssp EEETTCHHHHHTH-HHHHHHHHHHHTTSSEEEEEEECGGGGGGCCS----------CHHHHHHHHHHHTC-EEEEEBTTT
T ss_pred EEECCCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECCcccccCcC----------CHHHHHHHHHHcCC-eEEEEeCCC
Confidence 9999999999998 78887776544 58999999999999876553 78889999999998 999999999
Q ss_pred CCCHHHHHHHHHHHHhC
Q 028595 162 QQNVKAVFDAAIKVVIK 178 (207)
Q Consensus 162 ~~~i~~~f~~i~~~~~~ 178 (207)
+.|++++|+++.+.+..
T Consensus 161 ~~~i~~l~~~l~~~~~~ 177 (179)
T 2y8e_A 161 GYNVKQLFRRVAAALPG 177 (179)
T ss_dssp TBSHHHHHHHHHHTCC-
T ss_pred CCCHHHHHHHHHHHHhh
Confidence 99999999999887643
No 67
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=100.00 E-value=2.2e-32 Score=198.75 Aligned_cols=164 Identities=29% Similarity=0.464 Sum_probs=140.6
Q ss_pred cceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEE
Q 028595 3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 81 (207)
Q Consensus 3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i 81 (207)
..+||+++|.+++| ||||+++|+++.+...+.||.+..+ ...+.+++..+.+.+|||||++.+..++..+++++|+++
T Consensus 6 ~~~~i~v~G~~~~G-KSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 84 (177)
T 1wms_A 6 SLFKVILLGDGGVG-KSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCL 84 (177)
T ss_dssp EEEEEEEECCTTSS-HHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEE
T ss_pred ceeEEEEECCCCCC-HHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEEE
Confidence 36799999999999 9999999999988888889988776 557888999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhcC-----CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEE
Q 028595 82 LAFSLVSRASYENVLKKWIPELQHYS-----PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIE 156 (207)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~~i~~~~-----~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e 156 (207)
+|||+++++++..+ ..|+..+.... +++|+++|+||+|+.+ +. +..++++++++..+..++++
T Consensus 85 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~-~~----------~~~~~~~~~~~~~~~~~~~~ 152 (177)
T 1wms_A 85 LTFSVDDSQSFQNL-SNWKKEFIYYADVKEPESFPFVILGNKIDISE-RQ----------VSTEEAQAWCRDNGDYPYFE 152 (177)
T ss_dssp EEEETTCHHHHHTH-HHHHHHHHHHHTCSCTTTSCEEEEEECTTCSS-CS----------SCHHHHHHHHHHTTCCCEEE
T ss_pred EEEECcCHHHHHHH-HHHHHHHHHHccccccCCCcEEEEEECCcccc-cc----------cCHHHHHHHHHhcCCceEEE
Confidence 99999999999998 78887776533 5789999999999973 33 37888999998554449999
Q ss_pred eccCCCCCHHHHHHHHHHHHhCC
Q 028595 157 CSSKTQQNVKAVFDAAIKVVIKP 179 (207)
Q Consensus 157 ~Sa~~~~~i~~~f~~i~~~~~~~ 179 (207)
+||++|.|++++|+++++.+.+.
T Consensus 153 ~Sa~~~~gi~~l~~~l~~~~~~~ 175 (177)
T 1wms_A 153 TSAKDATNVAAAFEEAVRRVLAT 175 (177)
T ss_dssp CCTTTCTTHHHHHHHHHHHHHTC
T ss_pred EeCCCCCCHHHHHHHHHHHHHhh
Confidence 99999999999999999998764
No 68
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=100.00 E-value=6.8e-33 Score=204.06 Aligned_cols=164 Identities=27% Similarity=0.418 Sum_probs=145.6
Q ss_pred cceeEEEEecccccceeeeeeeccCCCCCccccCceeeeee--eEEEECCe---------EEEEEEEeCCCCcccccccc
Q 028595 3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFS--ANVVAEGT---------TVNLGLWDTAGQEDYNRLRP 71 (207)
Q Consensus 3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~--~~~~~~~~---------~~~l~i~D~~G~~~~~~~~~ 71 (207)
..+||+++|.+++| ||||+++|.++.+...+.+|.+..+. ..+..++. .+.+.+|||||++.+..++.
T Consensus 10 ~~~ki~v~G~~~~G-KSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~ 88 (195)
T 3bc1_A 10 YLIKFLALGDSGVG-KTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLTT 88 (195)
T ss_dssp EEEEEEEECSTTSS-HHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHHHH
T ss_pred eeEEEEEECCCCCC-HHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHHHH
Confidence 36899999999999 99999999999888888899887775 35556655 78999999999999999999
Q ss_pred ceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC--CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHh
Q 028595 72 LSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI 149 (207)
Q Consensus 72 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 149 (207)
.+++++|++|+|||++++.++..+ ..|+..+.... +++|+++|+||+|+.+.+.+ ..++++++++.+
T Consensus 89 ~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~----------~~~~~~~~~~~~ 157 (195)
T 3bc1_A 89 AFFRDAMGFLLLFDLTNEQSFLNV-RNWISQLQMHAYSENPDIVLCGNKSDLEDQRAV----------KEEEARELAEKY 157 (195)
T ss_dssp HTTTTCSEEEEEEETTCHHHHHTH-HHHHHHHHHHSSSSSCCEEEEEECTTCGGGCCS----------CHHHHHHHHHHH
T ss_pred HHHcCCCEEEEEEECCCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECccccccccc----------CHHHHHHHHHHc
Confidence 999999999999999999999998 78888887655 58999999999999776553 788999999999
Q ss_pred CCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 028595 150 GASYYIECSSKTQQNVKAVFDAAIKVVIKP 179 (207)
Q Consensus 150 ~~~~~~e~Sa~~~~~i~~~f~~i~~~~~~~ 179 (207)
++ +++++||+++.|++++|++|++.+.+.
T Consensus 158 ~~-~~~~~Sa~~~~~v~~l~~~l~~~~~~~ 186 (195)
T 3bc1_A 158 GI-PYFETSAANGTNISHAIEMLLDLIMKR 186 (195)
T ss_dssp TC-CEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred CC-CEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 98 999999999999999999999998754
No 69
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=100.00 E-value=5.4e-33 Score=206.95 Aligned_cols=164 Identities=23% Similarity=0.260 Sum_probs=109.1
Q ss_pred ceeEEEEecccccceeeeeeeccCC--CCCccccCceeeee-eeEEEECCe--EEEEEEEeCCCCccccccccceecCCc
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGR--SSIWDYIPTVFDNF-SANVVAEGT--TVNLGLWDTAGQEDYNRLRPLSYRGAD 78 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~--~~~~~~~~t~~~~~-~~~~~~~~~--~~~l~i~D~~G~~~~~~~~~~~~~~~d 78 (207)
.+||+++|.+++| ||||+++|+++ .+...+.+|++.++ ...+.+++. .+.+.+|||||++.+..++..+++++|
T Consensus 20 ~~~i~v~G~~~~G-Kssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 98 (208)
T 2yc2_C 20 RCKVAVVGEATVG-KSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGVY 98 (208)
T ss_dssp EEEEEEC-----------------------------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCCC
T ss_pred ceEEEEECCCCCC-HHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhCc
Confidence 5799999999999 99999999999 77888889988444 667788887 899999999999999999999999999
Q ss_pred EEEEEEeCCChhhHHHHHHHHHHHHhhcCC----CCcEEEEeeCCCccc-CcccccCCCCCcccCHHHHHHHHHHhCCcE
Q 028595 79 VFVLAFSLVSRASYENVLKKWIPELQHYSP----GVPVVLVGTKLDLRE-DKHYLADHPGLVPVTTAQGEELRKQIGASY 153 (207)
Q Consensus 79 ~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~----~~piivv~nK~D~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 153 (207)
++|+|||++++++++.+ ..|+..+....+ ++|+++|+||+|+.+ .+. +..++++.+++.+++ +
T Consensus 99 ~~i~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~----------v~~~~~~~~~~~~~~-~ 166 (208)
T 2yc2_C 99 YAILVFDVSSMESFESC-KAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQ----------VRLDMAQDWATTNTL-D 166 (208)
T ss_dssp EEEEEEETTCHHHHHHH-HHHHHHHHHHCSCTTSCCEEEEEEECC-------C----------CCHHHHHHHHHHTTC-E
T ss_pred EEEEEEECCCHHHHHHH-HHHHHHHHHhhcccccCCcEEEEEECcccchhhcc----------CCHHHHHHHHHHcCC-E
Confidence 99999999999999999 789988877654 899999999999977 554 378999999999997 9
Q ss_pred EEEeccCC-CCCHHHHHHHHHHHHhCCC
Q 028595 154 YIECSSKT-QQNVKAVFDAAIKVVIKPP 180 (207)
Q Consensus 154 ~~e~Sa~~-~~~i~~~f~~i~~~~~~~~ 180 (207)
++++||++ +.|++++|+++++.+.+..
T Consensus 167 ~~~~Sa~~~~~gi~~l~~~i~~~~~~~~ 194 (208)
T 2yc2_C 167 FFDVSANPPGKDADAPFLSIATTFYRNY 194 (208)
T ss_dssp EEECCC-------CHHHHHHHHHHHHHH
T ss_pred EEEeccCCCCcCHHHHHHHHHHHHHHHH
Confidence 99999999 9999999999999887544
No 70
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=100.00 E-value=1.1e-32 Score=202.77 Aligned_cols=161 Identities=23% Similarity=0.350 Sum_probs=142.1
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCcccc-ccccceecCCcEEE
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYN-RLRPLSYRGADVFV 81 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~-~~~~~~~~~~d~~i 81 (207)
.+||+++|.+++| ||||+++|+++.+...+.+|++.++ ...+.+++..+.+.+|||||++.+. .++..+++++|++|
T Consensus 20 ~~ki~v~G~~~~G-KSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~ii 98 (189)
T 1z06_A 20 IFKIIVIGDSNVG-KTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVV 98 (189)
T ss_dssp EEEEEEECCTTSS-HHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEE
T ss_pred eEEEEEECCCCCC-HHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCEEE
Confidence 5799999999999 9999999999998888889988776 5577889989999999999999998 88999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhcC--CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEecc
Q 028595 82 LAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSS 159 (207)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa 159 (207)
+|||++++.++..+ ..|+..+.... .+.|+++|+||+|+.+.+.+ ..++++.+++.+++ +++++||
T Consensus 99 lv~D~~~~~s~~~~-~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~v----------~~~~~~~~~~~~~~-~~~~~Sa 166 (189)
T 1z06_A 99 FVYDMTNMASFHSL-PAWIEECKQHLLANDIPRILVGNKCDLRSAIQV----------PTDLAQKFADTHSM-PLFETSA 166 (189)
T ss_dssp EEEETTCHHHHHTH-HHHHHHHHHHCCCSCCCEEEEEECTTCGGGCCS----------CHHHHHHHHHHTTC-CEEECCS
T ss_pred EEEECcCHHHHHHH-HHHHHHHHHhcCCCCCCEEEEEECcccccccee----------CHHHHHHHHHHcCC-EEEEEeC
Confidence 99999999999998 77888877653 58999999999999776553 78899999999998 9999999
Q ss_pred CCC---CCHHHHHHHHHHHHh
Q 028595 160 KTQ---QNVKAVFDAAIKVVI 177 (207)
Q Consensus 160 ~~~---~~i~~~f~~i~~~~~ 177 (207)
+++ .|++++|+++++.+.
T Consensus 167 ~~~~~~~~i~~l~~~l~~~i~ 187 (189)
T 1z06_A 167 KNPNDNDHVEAIFMTLAHKLK 187 (189)
T ss_dssp SSGGGGSCHHHHHHHHC----
T ss_pred CcCCcccCHHHHHHHHHHHHh
Confidence 999 999999999988764
No 71
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=100.00 E-value=4.2e-32 Score=199.71 Aligned_cols=162 Identities=30% Similarity=0.436 Sum_probs=136.0
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEE
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA 83 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v 83 (207)
.+||+++|..++| ||||+++|+++.+...+.+|.+..+...+.+++..+.+.+|||||++.+..++..+++.+|++++|
T Consensus 21 ~~ki~vvG~~~~G-KSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v 99 (190)
T 3con_A 21 EYKLVVVGAGGVG-KSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 99 (190)
T ss_dssp EEEEEEECSTTSS-HHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCC-----------CTTCSEEEEE
T ss_pred eeEEEEECcCCCC-HHHHHHHHHcCCCccccCCccceEEEEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEEEE
Confidence 4799999999999 999999999998888888998888888888899999999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcC--CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCC
Q 028595 84 FSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT 161 (207)
Q Consensus 84 ~d~~~~~s~~~~~~~~~~~i~~~~--~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 161 (207)
||+++..++..+ ..|+..+.... .++|+++|+||+|+.+. . +..++++++++.+++ +++++||++
T Consensus 100 ~d~~~~~s~~~~-~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~~-~----------~~~~~~~~~~~~~~~-~~~~~Sa~~ 166 (190)
T 3con_A 100 FAINNSKSFADI-NLYREQIKRVKDSDDVPMVLVGNKCDLPTR-T----------VDTKQAHELAKSYGI-PFIETSAKT 166 (190)
T ss_dssp EETTCHHHHHHH-HHHHHHHHHHHTCSCCCEEEEEECTTCSCC-C----------SCHHHHHHHHHHHTC-CEEECCTTT
T ss_pred EECcCHHHHHHH-HHHHHHHHHHhCCCCCeEEEEEECCcCCcc-c----------CCHHHHHHHHHHcCC-eEEEEeCCC
Confidence 999999999998 78888876654 37999999999999762 2 378899999999998 999999999
Q ss_pred CCCHHHHHHHHHHHHhCC
Q 028595 162 QQNVKAVFDAAIKVVIKP 179 (207)
Q Consensus 162 ~~~i~~~f~~i~~~~~~~ 179 (207)
+.|++++|+++++.+.+.
T Consensus 167 ~~gi~~l~~~l~~~~~~~ 184 (190)
T 3con_A 167 RQGVEDAFYTLVREIRQY 184 (190)
T ss_dssp CTTHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 999999999999988654
No 72
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=100.00 E-value=2.7e-33 Score=210.34 Aligned_cols=165 Identities=32% Similarity=0.491 Sum_probs=146.1
Q ss_pred ccceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCe----------EEEEEEEeCCCCccccccc
Q 028595 2 ELLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGT----------TVNLGLWDTAGQEDYNRLR 70 (207)
Q Consensus 2 ~~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~----------~~~l~i~D~~G~~~~~~~~ 70 (207)
+..+||+++|.+++| ||||+++|+++.+...+.+|.+..+ ...+.+++. .+.+.||||||++.+..++
T Consensus 23 ~~~~ki~vvG~~~~G-KSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~ 101 (217)
T 2f7s_A 23 DYLIKLLALGDSGVG-KTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLT 101 (217)
T ss_dssp SEEEEEEEESCTTSS-HHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHH
T ss_pred ceeEEEEEECcCCCC-HHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHH
Confidence 457899999999999 9999999999998888888888776 446666665 7899999999999999999
Q ss_pred cceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC--CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHH
Q 028595 71 PLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ 148 (207)
Q Consensus 71 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 148 (207)
..+++++|++|+|||++++.++..+ ..|+..+.... .++|+++|+||+|+.+.+.+ ..++++++++.
T Consensus 102 ~~~~~~~d~iilV~D~~~~~s~~~~-~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v----------~~~~~~~~~~~ 170 (217)
T 2f7s_A 102 TAFFRDAMGFLLMFDLTSQQSFLNV-RNWMSQLQANAYCENPDIVLIGNKADLPDQREV----------NERQARELADK 170 (217)
T ss_dssp HHHHTTCCEEEEEEETTCHHHHHHH-HHHHHTCCCCCTTTCCEEEEEEECTTCGGGCCS----------CHHHHHHHHHH
T ss_pred HHHhcCCCEEEEEEECcCHHHHHHH-HHHHHHHHHhcCcCCCCEEEEEECCcccccccc----------CHHHHHHHHHH
Confidence 9999999999999999999999998 78888876655 58999999999999776553 78899999999
Q ss_pred hCCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 028595 149 IGASYYIECSSKTQQNVKAVFDAAIKVVIKP 179 (207)
Q Consensus 149 ~~~~~~~e~Sa~~~~~i~~~f~~i~~~~~~~ 179 (207)
+++ +++++||+++.|++++|+++++.+.+.
T Consensus 171 ~~~-~~~~~Sa~~g~gi~~l~~~l~~~i~~~ 200 (217)
T 2f7s_A 171 YGI-PYFETSAATGQNVEKAVETLLDLIMKR 200 (217)
T ss_dssp TTC-CEEEEBTTTTBTHHHHHHHHHHHHHHH
T ss_pred CCC-cEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 998 899999999999999999999998754
No 73
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=100.00 E-value=4.8e-32 Score=194.38 Aligned_cols=161 Identities=29% Similarity=0.445 Sum_probs=145.4
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEE
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA 83 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v 83 (207)
.+||+++|.+++| ||||+++|.++.+...+.+|.+..+...+..++..+.+.+||+||++.+..++..++..+|++++|
T Consensus 3 ~~~i~v~G~~~~G-Kssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v 81 (166)
T 2ce2_X 3 EYKLVVVGAGGVG-KSALTIQLIQNHFVDECDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCV 81 (166)
T ss_dssp EEEEEEEESTTSS-HHHHHHHHHHSSCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEE
T ss_pred eeEEEEECCCCCC-HHHHHHHHHhCcCccccCCccceEEEEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEE
Confidence 4699999999999 999999999998888888998888877888899999999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcC--CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCC
Q 028595 84 FSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT 161 (207)
Q Consensus 84 ~d~~~~~s~~~~~~~~~~~i~~~~--~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 161 (207)
||+++++++..+ ..|+..+.... .+.|+++|+||+|+.+.. +..++++++++.+++ +++++||++
T Consensus 82 ~d~~~~~~~~~~-~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~-~~~~~Sa~~ 148 (166)
T 2ce2_X 82 FAINNTKSFEDI-HQYREQIKRVKDSDDVPMVLVGNKSDLAART-----------VESRQAQDLARSYGI-PYIETSAKT 148 (166)
T ss_dssp EETTCHHHHHHH-HHHHHHHHHHHTCSCCCEEEEEECTTCSCCC-----------SCHHHHHHHHHHHTC-CEEEECTTT
T ss_pred EECCCHHHHHHH-HHHHHHHHHhcCCCCCcEEEEEEchhhhhcc-----------cCHHHHHHHHHHcCC-eEEEecCCC
Confidence 999999999998 78888876654 379999999999997632 277889999999998 999999999
Q ss_pred CCCHHHHHHHHHHHHhC
Q 028595 162 QQNVKAVFDAAIKVVIK 178 (207)
Q Consensus 162 ~~~i~~~f~~i~~~~~~ 178 (207)
+.|++++|+++++.+.+
T Consensus 149 ~~gi~~l~~~l~~~~~~ 165 (166)
T 2ce2_X 149 RQGVEDAFYTLVREIRQ 165 (166)
T ss_dssp CTTHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 99999999999998764
No 74
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=100.00 E-value=1.6e-32 Score=200.13 Aligned_cols=166 Identities=27% Similarity=0.433 Sum_probs=129.3
Q ss_pred cceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEEC-CeEEEEEEEeCCCCccccccccceecCCcEE
Q 028595 3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAE-GTTVNLGLWDTAGQEDYNRLRPLSYRGADVF 80 (207)
Q Consensus 3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~-~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ 80 (207)
..+||+++|.+++| ||||+++|+++.+...+.||.+.++ ...+.++ +..+.+.+|||||++.+..++..+++++|++
T Consensus 7 ~~~~i~v~G~~~~G-KSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 85 (182)
T 1ky3_A 7 NILKVIILGDSGVG-KTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCC 85 (182)
T ss_dssp CEEEEEEECCTTSS-HHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEE
T ss_pred ceEEEEEECCCCCC-HHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCEE
Confidence 36899999999999 9999999999998888888887665 4466666 5678999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhcC-----CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEE
Q 028595 81 VLAFSLVSRASYENVLKKWIPELQHYS-----PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYI 155 (207)
Q Consensus 81 i~v~d~~~~~s~~~~~~~~~~~i~~~~-----~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 155 (207)
|+|||++++.+++.+ ..|+..+.... +++|+++|+||+|+.+.... +..++++.+++..+..+++
T Consensus 86 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~---------v~~~~~~~~~~~~~~~~~~ 155 (182)
T 1ky3_A 86 VLVYDVTNASSFENI-KSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKI---------VSEKSAQELAKSLGDIPLF 155 (182)
T ss_dssp EEEEETTCHHHHHTH-HHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGGCC---------SCHHHHHHHHHHTTSCCEE
T ss_pred EEEEECCChHHHHHH-HHHHHHHHHHhcccCcCCCcEEEEEECCcccccccc---------CCHHHHHHHHHhcCCCeEE
Confidence 999999999999998 78877775432 57999999999999644321 3788899999855444899
Q ss_pred EeccCCCCCHHHHHHHHHHHHhCC
Q 028595 156 ECSSKTQQNVKAVFDAAIKVVIKP 179 (207)
Q Consensus 156 e~Sa~~~~~i~~~f~~i~~~~~~~ 179 (207)
++||++|.|++++|+++++.+.++
T Consensus 156 ~~Sa~~~~gi~~l~~~l~~~~~~~ 179 (182)
T 1ky3_A 156 LTSAKNAINVDTAFEEIARSALQQ 179 (182)
T ss_dssp EEBTTTTBSHHHHHHHHHHHHHHH
T ss_pred EEecCCCCCHHHHHHHHHHHHHHh
Confidence 999999999999999999988643
No 75
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=100.00 E-value=1.6e-33 Score=209.13 Aligned_cols=163 Identities=29% Similarity=0.486 Sum_probs=136.8
Q ss_pred cceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEE
Q 028595 3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 81 (207)
Q Consensus 3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i 81 (207)
..+||+++|.+++| ||||+++|+++.+...+.++.+.++ ...+.+++..+.+.+|||||++.+..++..+++++|++|
T Consensus 32 ~~~ki~vvG~~~~G-KSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i 110 (199)
T 3l0i_B 32 YLFKLLLIGDSGVG-KSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGII 110 (199)
T ss_dssp EEEEEEEECCTTSC-CTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEE
T ss_pred cceEEEEECCCCCC-HHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEE
Confidence 46899999999999 9999999999998888888888776 457788999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccC
Q 028595 82 LAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK 160 (207)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 160 (207)
+|||++++++++.+ ..|+..+.... .++|+++|+||+|+.+.+.+ ..++++.+++.+++ +++++||+
T Consensus 111 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~v----------~~~~~~~~~~~~~~-~~~~vSA~ 178 (199)
T 3l0i_B 111 VVYDVTDQESFNNV-KQWLQEIDRYASENVNKLLVGNKCDLTTKKVV----------DYTTAKEFADSLGI-PFLETSAK 178 (199)
T ss_dssp ECC-CCCSHHHHHH-HHHHHHHHSCC-CCSEEEEC-CCSSCC--CCC----------CSCC-CHHHHTTTC-CBCCCCC-
T ss_pred EEEECCCHHHHHHH-HHHHHHHHHhccCCCCEEEEEECccCCccccC----------CHHHHHHHHHHcCC-eEEEEECC
Confidence 99999999999999 78998887765 48999999999999776553 55677889999998 89999999
Q ss_pred CCCCHHHHHHHHHHHHhC
Q 028595 161 TQQNVKAVFDAAIKVVIK 178 (207)
Q Consensus 161 ~~~~i~~~f~~i~~~~~~ 178 (207)
++.|++++|+++++.+..
T Consensus 179 ~g~gv~~l~~~l~~~l~~ 196 (199)
T 3l0i_B 179 NATNVEQSFMTMAAEIKK 196 (199)
T ss_dssp --HHHHHHHHHHTTTTTT
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999999877654
No 76
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.98 E-value=1e-31 Score=200.98 Aligned_cols=162 Identities=28% Similarity=0.468 Sum_probs=144.3
Q ss_pred cceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEE
Q 028595 3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 81 (207)
Q Consensus 3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i 81 (207)
..+||+++|.+++| ||||+++|+++.+...+.+|++.++ ...+.+++..+.+.+|||||++.+..++..+++++|+++
T Consensus 19 ~~~~i~v~G~~~~G-KSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 97 (213)
T 3cph_A 19 SIMKILLIGDSGVG-KSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGII 97 (213)
T ss_dssp -CEEEEEECSTTSS-HHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEEE
T ss_pred cceEEEEECCCCCC-HHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEE
Confidence 46899999999999 9999999999988888889988777 457788998999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccC
Q 028595 82 LAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK 160 (207)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 160 (207)
+|||++++.++..+ ..|+..+.... .+.|+++|+||+|+. .+. +..++++.+++.+++ +++++||+
T Consensus 98 ~v~d~~~~~s~~~~-~~~~~~i~~~~~~~~piilv~nK~Dl~-~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~ 164 (213)
T 3cph_A 98 LVYDVTDERTFTNI-KQWFKTVNEHANDEAQLLLVGNKSDME-TRV----------VTADQGEALAKELGI-PFIESSAK 164 (213)
T ss_dssp EEEETTCHHHHHTH-HHHHHHHHHHTTTCSEEEEEEECTTCS-SCC----------SCHHHHHHHHHHHTC-CEEECBTT
T ss_pred EEEECCCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECCCCc-ccc----------cCHHHHHHHHHHcCC-EEEEEeCC
Confidence 99999999999998 78888887665 479999999999993 333 377889999999998 89999999
Q ss_pred CCCCHHHHHHHHHHHHhC
Q 028595 161 TQQNVKAVFDAAIKVVIK 178 (207)
Q Consensus 161 ~~~~i~~~f~~i~~~~~~ 178 (207)
++.|++++|.++.+.+.+
T Consensus 165 ~~~gi~~l~~~l~~~~~~ 182 (213)
T 3cph_A 165 NDDNVNEIFFTLAKLIQE 182 (213)
T ss_dssp TTBSSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 999999999999988864
No 77
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.98 E-value=1.4e-31 Score=198.44 Aligned_cols=160 Identities=25% Similarity=0.386 Sum_probs=139.8
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeE------------------------------
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTT------------------------------ 52 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~------------------------------ 52 (207)
.+||+++|.+++| ||||+++|+++.+...+.+|++..+ ...+.+++..
T Consensus 7 ~~ki~v~G~~~~G-KSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (208)
T 3clv_A 7 SYKTVLLGESSVG-KSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHNN 85 (208)
T ss_dssp SEEEEEECCTTSS-HHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------C
T ss_pred ceEEEEECCCCCC-HHHHHHHHHhCcCCCCcCccccceeEEEEEEecCcccccccccccccccccccccccccccccccc
Confidence 6899999999999 9999999999998888889988766 4456666655
Q ss_pred -------EEEEEEeCCCCccccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCc
Q 028595 53 -------VNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK 125 (207)
Q Consensus 53 -------~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~ 125 (207)
+.+.+|||||++.+..++..+++.+|++++|||++++.++..+ ..|+..+.... +.|+++|+||+| ...+
T Consensus 86 ~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~-~~~~~~i~~~~-~~piilv~NK~D-~~~~ 162 (208)
T 3clv_A 86 YNENLCNIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRA-KTWVNQLKISS-NYIIILVANKID-KNKF 162 (208)
T ss_dssp CCTTTCEEEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHH-HHHHHHHHHHS-CCEEEEEEECTT-CC-C
T ss_pred ccCccceeEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHH-HHHHHHHHhhC-CCcEEEEEECCC-cccc
Confidence 8999999999999999999999999999999999999999998 78888887654 399999999999 4333
Q ss_pred ccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 028595 126 HYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIK 178 (207)
Q Consensus 126 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i~~~~~~ 178 (207)
. +..++++++++.++. +++++||+++.|++++|+++++.+.+
T Consensus 163 ~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~l~~~l~~~~~~ 204 (208)
T 3clv_A 163 Q----------VDILEVQKYAQDNNL-LFIQTSAKTGTNIKNIFYMLAEEIYK 204 (208)
T ss_dssp C----------SCHHHHHHHHHHTTC-EEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred c----------CCHHHHHHHHHHcCC-cEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 3 378899999999998 99999999999999999999988753
No 78
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.97 E-value=2.4e-32 Score=205.90 Aligned_cols=164 Identities=24% Similarity=0.359 Sum_probs=145.3
Q ss_pred cceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEE
Q 028595 3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 81 (207)
Q Consensus 3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i 81 (207)
..+||+++|.+++| ||||+++|+.+.+...+.+|.+.++ ...+.+++..+.+.+|||||++.+..++..+++++|+++
T Consensus 14 ~~~ki~v~G~~~~G-KSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i 92 (221)
T 3gj0_A 14 VQFKLVLVGDGGTG-KTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAI 92 (221)
T ss_dssp CEEEEEEEECTTSS-HHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCCEEE
T ss_pred cceEEEEECCCCCC-HHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCCEEE
Confidence 35799999999999 9999999998887788888887666 557788899999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCC
Q 028595 82 LAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKT 161 (207)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 161 (207)
+|||++++.++..+ ..|+..+....+++|+++|+||+|+.+... ..++..+++..++ +++++||++
T Consensus 93 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~------------~~~~~~~~~~~~~-~~~~~Sa~~ 158 (221)
T 3gj0_A 93 IMFDVTSRVTYKNV-PNWHRDLVRVCENIPIVLCGNKVDIKDRKV------------KAKSIVFHRKKNL-QYYDISAKS 158 (221)
T ss_dssp EEEETTCHHHHHTH-HHHHHHHHHHSTTCCEEEEEECTTSSSCSS------------CGGGCCHHHHHTC-EEEECBGGG
T ss_pred EEEECCCHHHHHHH-HHHHHHHHHhCCCCCEEEEEECCccccccc------------cHHHHHHHHHcCC-EEEEEeCCC
Confidence 99999999999999 789999988778999999999999976542 2255667888888 999999999
Q ss_pred CCCHHHHHHHHHHHHhCCCc
Q 028595 162 QQNVKAVFDAAIKVVIKPPQ 181 (207)
Q Consensus 162 ~~~i~~~f~~i~~~~~~~~~ 181 (207)
|.|++++|+++++.+...+.
T Consensus 159 ~~gi~~l~~~l~~~l~~~~~ 178 (221)
T 3gj0_A 159 NYNFEKPFLWLARKLIGDPN 178 (221)
T ss_dssp TBTTTHHHHHHHHHHHTCTT
T ss_pred CCCHHHHHHHHHHHHHhCcc
Confidence 99999999999999987643
No 79
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.97 E-value=1e-31 Score=201.87 Aligned_cols=166 Identities=25% Similarity=0.359 Sum_probs=142.5
Q ss_pred cceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeee-EEEE-CCeEEEEEEEeCCCCccccccccceecCCcEE
Q 028595 3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSA-NVVA-EGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF 80 (207)
Q Consensus 3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~-~~~~-~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ 80 (207)
..+||+++|.+++| ||||+++|+++.+...+.+|.+..+.. .+.. ++..+.+.+|||||++.+..++..++.++|++
T Consensus 10 ~~~ki~vvG~~~~G-KSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~ 88 (218)
T 4djt_A 10 LTYKICLIGDGGVG-KTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASGA 88 (218)
T ss_dssp CEEEEEEECCTTSS-HHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSEE
T ss_pred CccEEEEECCCCCC-HHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCEE
Confidence 46899999999999 999999999999888888888766644 3333 34458999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEecc
Q 028595 81 VLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSS 159 (207)
Q Consensus 81 i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa 159 (207)
|+|||++++.+++.+ ..|+..+.... .+.|+++|+||+|+.+.+.+ ..++++.+++..++ +++++||
T Consensus 89 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~----------~~~~~~~~~~~~~~-~~~~~Sa 156 (218)
T 4djt_A 89 ILFFDVTSRITCQNL-ARWVKEFQAVVGNEAPIVVCANKIDIKNRQKI----------SKKLVMEVLKGKNY-EYFEISA 156 (218)
T ss_dssp EEEEETTCHHHHHTH-HHHHHHHHHHHCSSSCEEEEEECTTCC----C----------CHHHHHHHTTTCCC-EEEEEBT
T ss_pred EEEEeCCCHHHHHHH-HHHHHHHHHhcCCCCCEEEEEECCCCcccccc----------CHHHHHHHHHHcCC-cEEEEec
Confidence 999999999999999 78988887655 46999999999999876553 78889999998888 9999999
Q ss_pred CCCCCHHHHHHHHHHHHhCCCc
Q 028595 160 KTQQNVKAVFDAAIKVVIKPPQ 181 (207)
Q Consensus 160 ~~~~~i~~~f~~i~~~~~~~~~ 181 (207)
++|.|++++|+++++.+.....
T Consensus 157 ~~g~gv~~l~~~l~~~~~~~~~ 178 (218)
T 4djt_A 157 KTAHNFGLPFLHLARIFTGRPD 178 (218)
T ss_dssp TTTBTTTHHHHHHHHHHHCCTT
T ss_pred CCCCCHHHHHHHHHHHHhcccc
Confidence 9999999999999999987643
No 80
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.97 E-value=2.8e-31 Score=211.19 Aligned_cols=176 Identities=51% Similarity=0.824 Sum_probs=152.4
Q ss_pred cceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEE
Q 028595 3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 82 (207)
Q Consensus 3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~ 82 (207)
...||+++|.+++| ||||+++++++.+...+.+|+++.+...+.+++..+.+.+|||||++.+..++..+++++|++++
T Consensus 154 ~~~~i~i~G~~~~G-Kssli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~ 232 (332)
T 2wkq_A 154 ELIKCVVVGDGAVG-KTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLI 232 (332)
T ss_dssp TCEEEEEEESTTSS-HHHHHHHHHHSCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEE
T ss_pred ceeEEEEECCCCCC-hHHHHHHHHhCCCCcccCCcccceeEEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEE
Confidence 35799999999999 99999999999988889999998888888899999999999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCccccc--CCCCCcccCHHHHHHHHHHhCCcEEEEeccC
Q 028595 83 AFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLA--DHPGLVPVTTAQGEELRKQIGASYYIECSSK 160 (207)
Q Consensus 83 v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 160 (207)
|||++++.++..+...|+..+....+++|+++|+||+|+.+...... .....+.+..++++.+++.++..+++++||+
T Consensus 233 v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~ 312 (332)
T 2wkq_A 233 CFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSAL 312 (332)
T ss_dssp EEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTT
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEecCC
Confidence 99999999999985578888888777999999999999965421000 0011233588899999999997689999999
Q ss_pred CCCCHHHHHHHHHHHHhCC
Q 028595 161 TQQNVKAVFDAAIKVVIKP 179 (207)
Q Consensus 161 ~~~~i~~~f~~i~~~~~~~ 179 (207)
+|.|++++|+.+++.++.+
T Consensus 313 ~~~gi~~l~~~l~~~~~~~ 331 (332)
T 2wkq_A 313 TQRGLKTVFDEAIRAVLCP 331 (332)
T ss_dssp TCTTHHHHHHHHHHHHHC-
T ss_pred CCcCHHHHHHHHHHHHhcC
Confidence 9999999999999998765
No 81
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.97 E-value=2.1e-32 Score=202.01 Aligned_cols=162 Identities=18% Similarity=0.170 Sum_probs=136.1
Q ss_pred cceeEEEEecccccceeeeeeeccCCCCCcc-----------ccCceeeeee-eEE-EECCeEEEEEEEeCCCCcccccc
Q 028595 3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWD-----------YIPTVFDNFS-ANV-VAEGTTVNLGLWDTAGQEDYNRL 69 (207)
Q Consensus 3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~-----------~~~t~~~~~~-~~~-~~~~~~~~l~i~D~~G~~~~~~~ 69 (207)
..+||+++|.+++| ||||++.+. +.+... +.||.+.++. ..+ .+++..+.+.+|||||++.+..+
T Consensus 13 ~~~ki~vvG~~~~G-KssL~~~l~-~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~ 90 (198)
T 3t1o_A 13 INFKIVYYGPGLSG-KTTNLKWIY-SKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNAS 90 (198)
T ss_dssp EEEEEEEECSTTSS-HHHHHHHHH-HTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSHH
T ss_pred cccEEEEECCCCCC-HHHHHHHHH-hhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHHHHH
Confidence 46899999999999 999996554 444444 3456665553 344 66788999999999999999999
Q ss_pred ccceecCCcEEEEEEeCC------ChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHH
Q 028595 70 RPLSYRGADVFVLAFSLV------SRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGE 143 (207)
Q Consensus 70 ~~~~~~~~d~~i~v~d~~------~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~ 143 (207)
+..+++++|++|+|||++ +.+++..+ ..|+..+....+++|+++|+||+|+.+. +..++++
T Consensus 91 ~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l-~~~l~~~~~~~~~~piilv~NK~Dl~~~------------~~~~~~~ 157 (198)
T 3t1o_A 91 RKLILRGVDGIVFVADSAPNRLRANAESMRNM-RENLAEYGLTLDDVPIVIQVNKRDLPDA------------LPVEMVR 157 (198)
T ss_dssp HHHHTTTCCEEEEEEECCGGGHHHHHHHHHHH-HHHHHHTTCCTTSSCEEEEEECTTSTTC------------CCHHHHH
T ss_pred HHHHHhcCCEEEEEEECCcchhhHhHHHHHHH-HHHHHhhccccCCCCEEEEEEchhcccc------------cCHHHHH
Confidence 999999999999999999 66788887 6788887555578999999999999664 2788999
Q ss_pred HHHHHhCCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 028595 144 ELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP 179 (207)
Q Consensus 144 ~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i~~~~~~~ 179 (207)
++++.+++.+++++||++|.|++++|+++++.+.+.
T Consensus 158 ~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~ 193 (198)
T 3t1o_A 158 AVVDPEGKFPVLEAVATEGKGVFETLKEVSRLVLAR 193 (198)
T ss_dssp HHHCTTCCSCEEECBGGGTBTHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCceEEEEecCCCcCHHHHHHHHHHHHHHH
Confidence 999999876899999999999999999999988754
No 82
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.95 E-value=1.6e-33 Score=209.79 Aligned_cols=172 Identities=52% Similarity=0.843 Sum_probs=147.0
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEE
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA 83 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v 83 (207)
.+||+++|.+++| ||||+++|+++.+...+.+|.++.+...+.+++..+.+.+|||||++.+..++..+++++|++++|
T Consensus 30 ~~ki~v~G~~~~G-KSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv 108 (204)
T 3th5_A 30 AIKCVVVGDGAVG-KTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLIC 108 (204)
Confidence 5799999999999 999999999999888889999888877778888889999999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccC--CCCCcccCHHHHHHHHHHhCCcEEEEeccCC
Q 028595 84 FSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLAD--HPGLVPVTTAQGEELRKQIGASYYIECSSKT 161 (207)
Q Consensus 84 ~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~ 161 (207)
||+++++++..+...|+..+....+++|+++|+||+|+.+....... ....+.+..+++..+++.++..+++++||++
T Consensus 109 ~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vSA~~ 188 (204)
T 3th5_A 109 FSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALT 188 (204)
Confidence 99999999999844888888776678999999999999765321100 0011234677888899988876899999999
Q ss_pred CCCHHHHHHHHHHHH
Q 028595 162 QQNVKAVFDAAIKVV 176 (207)
Q Consensus 162 ~~~i~~~f~~i~~~~ 176 (207)
|.|++++|+++++.+
T Consensus 189 g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 189 QRGLKTVFDEAIRAV 203 (204)
Confidence 999999999998765
No 83
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.97 E-value=2.6e-31 Score=196.65 Aligned_cols=164 Identities=14% Similarity=0.087 Sum_probs=126.9
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCCc-cccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEE
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSIW-DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 82 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~ 82 (207)
..||+++|.+++| ||||+++|+++.+.. .+.||++..+. .+ ++..+.+.+|||||++.+..++..+++++|++|+
T Consensus 17 ~~ki~v~G~~~~G-KSsl~~~l~~~~~~~~~~~~t~~~~~~-~~--~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~ 92 (199)
T 4bas_A 17 KLQVVMCGLDNSG-KTTIINQVKPAQSSSKHITATVGYNVE-TF--EKGRVAFTVFDMGGAKKFRGLWETYYDNIDAVIF 92 (199)
T ss_dssp EEEEEEECCTTSC-HHHHHHHHSCCC----CCCCCSSEEEE-EE--EETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEE
T ss_pred CcEEEEECCCCCC-HHHHHHHHhcCCCcccccccccceeEE-EE--EeCCEEEEEEECCCCHhHHHHHHHHHhcCCEEEE
Confidence 5799999999999 999999999999887 78899884332 23 3445889999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhcC---------CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHH-HHHHHhCCc
Q 028595 83 AFSLVSRASYENVLKKWIPELQHYS---------PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGE-ELRKQIGAS 152 (207)
Q Consensus 83 v~d~~~~~s~~~~~~~~~~~i~~~~---------~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~ 152 (207)
|||+++++++..+ ..|+..+.... +++|+++|+||+|+.+.... ..+...... .+++..++
T Consensus 93 v~D~~~~~s~~~~-~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~~-------~~~~~~~~~~~~~~~~~~- 163 (199)
T 4bas_A 93 VVDSSDHLRLCVV-KSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKTA-------AELVEILDLTTLMGDHPF- 163 (199)
T ss_dssp EEETTCGGGHHHH-HHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCCH-------HHHHHHHTHHHHHTTSCE-
T ss_pred EEECCcHHHHHHH-HHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCCH-------HHHHHHhcchhhccCCee-
Confidence 9999999999999 56666654431 28999999999999765321 000111111 11234555
Q ss_pred EEEEeccCCCCCHHHHHHHHHHHHhCCC
Q 028595 153 YYIECSSKTQQNVKAVFDAAIKVVIKPP 180 (207)
Q Consensus 153 ~~~e~Sa~~~~~i~~~f~~i~~~~~~~~ 180 (207)
+++++||++|.|++++|++|++.+....
T Consensus 164 ~~~~~Sa~~g~gv~~l~~~l~~~~~~~~ 191 (199)
T 4bas_A 164 VIFASNGLKGTGVHEGFSWLQETASRQS 191 (199)
T ss_dssp EEEECBTTTTBTHHHHHHHHHHHHHHHC
T ss_pred EEEEeeCCCccCHHHHHHHHHHHHHHHh
Confidence 8999999999999999999999987654
No 84
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.97 E-value=3.1e-30 Score=191.34 Aligned_cols=154 Identities=16% Similarity=0.160 Sum_probs=121.0
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEE
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA 83 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v 83 (207)
..||+++|.+++| ||||+++|.++.+. .+.||.+.. ...+.+++ +.+.+|||||++.++.++..+++++|++++|
T Consensus 25 ~~ki~lvG~~~vG-KSsLi~~l~~~~~~-~~~~t~~~~-~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v 99 (198)
T 1f6b_A 25 TGKLVFLGLDNAG-KTTLLHMLKDDRLG-QHVPTLHPT-SEELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIVFL 99 (198)
T ss_dssp CEEEEEEEETTSS-HHHHHHHHSCC-------CCCCCS-CEEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEEEE
T ss_pred CcEEEEECCCCCC-HHHHHHHHhcCCCC-ccCCCCCce-eEEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEEEE
Confidence 5799999999999 99999999988864 567887764 34666777 7899999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhc--CCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHh------------
Q 028595 84 FSLVSRASYENVLKKWIPELQHY--SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI------------ 149 (207)
Q Consensus 84 ~d~~~~~s~~~~~~~~~~~i~~~--~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~------------ 149 (207)
||+++++++..+ ..|+..+.+. .+++|+++|+||+|+.+. +..+++++++...
T Consensus 100 ~D~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (198)
T 1f6b_A 100 VDCADHERLLES-KEELDSLMTDETIANVPILILGNKIDRPEA------------ISEERLREMFGLYGQTTGKGSVSLK 166 (198)
T ss_dssp EETTCGGGHHHH-HHHHHHHHTCGGGTTSCEEEEEECTTSTTC------------CCHHHHHHHHTCTTTCCCSSCCCTT
T ss_pred EECCCHHHHHHH-HHHHHHHHhCcccCCCcEEEEEECCCcccc------------CCHHHHHHHhCcccccccccccccc
Confidence 999999999998 6777666543 258999999999999652 2667777776532
Q ss_pred ----CCcEEEEeccCCCCCHHHHHHHHHHH
Q 028595 150 ----GASYYIECSSKTQQNVKAVFDAAIKV 175 (207)
Q Consensus 150 ----~~~~~~e~Sa~~~~~i~~~f~~i~~~ 175 (207)
...+++++||++|.|++++|+++++.
T Consensus 167 ~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~ 196 (198)
T 1f6b_A 167 ELNARPLEVFMCSVLKRQGYGEGFRWMAQY 196 (198)
T ss_dssp TCCSCCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred cccCceEEEEEEECCCCCCHHHHHHHHHHh
Confidence 22379999999999999999999764
No 85
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.97 E-value=3.3e-30 Score=186.11 Aligned_cols=165 Identities=12% Similarity=0.114 Sum_probs=127.6
Q ss_pred CccceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEE
Q 028595 1 MELLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF 80 (207)
Q Consensus 1 m~~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ 80 (207)
|...+||+++|.+++| ||||+++|.++.+. .+.||.+.. ...+..+ .+.+.+|||||++.+..++..+++++|++
T Consensus 4 ~~~~~~i~v~G~~~~G-Kssl~~~l~~~~~~-~~~~t~~~~-~~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~i 78 (171)
T 1upt_A 4 MTREMRILILGLDGAG-KTTILYRLQVGEVV-TTIPTIGFN-VETVTYK--NLKFQVWDLGGLTSIRPYWRCYYSNTDAV 78 (171)
T ss_dssp CSSCEEEEEECSTTSS-HHHHHHHHHHSSCC-CCCCCSSEE-EEEEEET--TEEEEEEEECCCGGGGGGGGGGCTTCSEE
T ss_pred CCCccEEEEECCCCCC-HHHHHHHHhcCCCC-CcCCcCccc-eEEEEEC--CEEEEEEECCCChhhhHHHHHHhccCCEE
Confidence 5667899999999999 99999999988864 466777643 3345555 47889999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhcC--CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEec
Q 028595 81 VLAFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECS 158 (207)
Q Consensus 81 i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~S 158 (207)
++|||+++++++..+ ..|+..+.... ++.|+++|+||+|+.+.... ..+.......++...++ +++++|
T Consensus 79 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~-------~~~~~~~~~~~~~~~~~-~~~~~S 149 (171)
T 1upt_A 79 IYVVDSCDRDRIGIS-KSELVAMLEEEELRKAILVVFANKQDMEQAMTS-------SEMANSLGLPALKDRKW-QIFKTS 149 (171)
T ss_dssp EEEEETTCCTTHHHH-HHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCH-------HHHHHHHTGGGCTTSCE-EEEECC
T ss_pred EEEEECCCHHHHHHH-HHHHHHHHhchhhCCCEEEEEEECCCCcCCCCH-------HHHHHHhCchhccCCce-EEEECc
Confidence 999999999999988 55655554332 58999999999999765321 00011111122233455 899999
Q ss_pred cCCCCCHHHHHHHHHHHHhCC
Q 028595 159 SKTQQNVKAVFDAAIKVVIKP 179 (207)
Q Consensus 159 a~~~~~i~~~f~~i~~~~~~~ 179 (207)
|++|.|++++|+++++.+.++
T Consensus 150 a~~~~gi~~l~~~l~~~i~~~ 170 (171)
T 1upt_A 150 ATKGTGLDEAMEWLVETLKSR 170 (171)
T ss_dssp TTTCTTHHHHHHHHHHHHHTC
T ss_pred CCCCcCHHHHHHHHHHHHhhc
Confidence 999999999999999988654
No 86
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.97 E-value=5.4e-30 Score=188.13 Aligned_cols=160 Identities=13% Similarity=0.131 Sum_probs=125.6
Q ss_pred cceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEE
Q 028595 3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 82 (207)
Q Consensus 3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~ 82 (207)
...||+++|.+++| ||||+++|+++.+. .+.||.+.. ...+.+++ +.+.+|||||++.+..++..+++++|++++
T Consensus 15 ~~~~i~v~G~~~~G-Kssl~~~l~~~~~~-~~~~t~~~~-~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~ 89 (187)
T 1zj6_A 15 QEHKVIIVGLDNAG-KTTILYQFSMNEVV-HTSPTIGSN-VEEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVIV 89 (187)
T ss_dssp SCEEEEEEESTTSS-HHHHHHHHHTTSCE-EEECCSCSS-CEEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEEE
T ss_pred CccEEEEECCCCCC-HHHHHHHHhcCCCC-cCcCCCccc-eEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence 36799999999999 99999999988876 677887733 34555565 789999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhc--CCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHH-----HhCCcEEE
Q 028595 83 AFSLVSRASYENVLKKWIPELQHY--SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRK-----QIGASYYI 155 (207)
Q Consensus 83 v~d~~~~~s~~~~~~~~~~~i~~~--~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~-----~~~~~~~~ 155 (207)
|||+++++++..+ ..|+..+... ..+.|+++|+||+|+.+.. ..++..+... ..++ +++
T Consensus 90 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~------------~~~~i~~~~~~~~~~~~~~-~~~ 155 (187)
T 1zj6_A 90 VVDSTDRERISVT-REELYKMLAHEDLRKAGLLIFANKQDVKECM------------TVAEISQFLKLTSIKDHQW-HIQ 155 (187)
T ss_dssp EEETTCTTTHHHH-HHHHHHHHTSGGGTTCEEEEEEECTTSTTCC------------CHHHHHHHHTGGGCCSSCE-EEE
T ss_pred EEeCCCHHHHHHH-HHHHHHHHhchhhCCCeEEEEEECCCCcCCC------------CHHHHHHHhChhhhcCCCc-EEE
Confidence 9999999999999 6777776554 2689999999999997532 3344444332 2344 899
Q ss_pred EeccCCCCCHHHHHHHHHHHHhCCCc
Q 028595 156 ECSSKTQQNVKAVFDAAIKVVIKPPQ 181 (207)
Q Consensus 156 e~Sa~~~~~i~~~f~~i~~~~~~~~~ 181 (207)
++||++|.|++++|+++++.+.....
T Consensus 156 ~~Sa~~g~gi~~l~~~l~~~~~~~~~ 181 (187)
T 1zj6_A 156 ACCALTGEGLCQGLEWMMSRLKIRLE 181 (187)
T ss_dssp ECBTTTTBTHHHHHHHHHHHHCC---
T ss_pred EccCCCCcCHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999876654
No 87
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.97 E-value=1.7e-29 Score=185.20 Aligned_cols=158 Identities=15% Similarity=0.164 Sum_probs=128.1
Q ss_pred cceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEE
Q 028595 3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 82 (207)
Q Consensus 3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~ 82 (207)
...||+++|.+++| ||||+++++++. ...+.||.+.. ...+.+++ +.+.+|||||++.+...+..+++++|++++
T Consensus 17 ~~~~i~v~G~~~~G-Kssl~~~l~~~~-~~~~~~t~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~ 91 (186)
T 1ksh_A 17 RELRLLMLGLDNAG-KTTILKKFNGED-VDTISPTLGFN-IKTLEHRG--FKLNIWDVGGQKSLRSYWRNYFESTDGLIW 91 (186)
T ss_dssp CCEEEEEECSTTSS-HHHHHHHHTTCC-CSSCCCCSSEE-EEEEEETT--EEEEEEEECCSHHHHTTGGGGCTTCSEEEE
T ss_pred CeeEEEEECCCCCC-HHHHHHHHhcCC-CCcccccCccc-eEEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEEE
Confidence 46799999999999 999999999988 77788888743 33455554 788999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhc--CCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHH-----HhCCcEEE
Q 028595 83 AFSLVSRASYENVLKKWIPELQHY--SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRK-----QIGASYYI 155 (207)
Q Consensus 83 v~d~~~~~s~~~~~~~~~~~i~~~--~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~-----~~~~~~~~ 155 (207)
|||+++++++..+ ..|+..+... .++.|+++|+||+|+.+.. ..++..+... ..++ +++
T Consensus 92 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~~~~-~~~ 157 (186)
T 1ksh_A 92 VVDSADRQRMQDC-QRELQSLLVEERLAGATLLIFANKQDLPGAL------------SCNAIQEALELDSIRSHHW-RIQ 157 (186)
T ss_dssp EEETTCGGGHHHH-HHHHHHHHTCGGGTTCEEEEEEECTTSTTCC------------CHHHHHHHTTGGGCCSSCE-EEE
T ss_pred EEECcCHHHHHHH-HHHHHHHHhChhcCCCcEEEEEeCccCCCCC------------CHHHHHHHhChhhccCCce-EEE
Confidence 9999999999998 5666665443 2689999999999997653 3333333222 2344 899
Q ss_pred EeccCCCCCHHHHHHHHHHHHhCC
Q 028595 156 ECSSKTQQNVKAVFDAAIKVVIKP 179 (207)
Q Consensus 156 e~Sa~~~~~i~~~f~~i~~~~~~~ 179 (207)
++||++|.|++++|+++++.+.++
T Consensus 158 ~~Sa~~~~gi~~l~~~l~~~i~~~ 181 (186)
T 1ksh_A 158 GCSAVTGEDLLPGIDWLLDDISSR 181 (186)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred EeeCCCCCCHHHHHHHHHHHHHhc
Confidence 999999999999999999988765
No 88
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.97 E-value=1.4e-29 Score=186.42 Aligned_cols=158 Identities=13% Similarity=0.161 Sum_probs=128.1
Q ss_pred cceeEEEEecccccceeeeeeeccCCC-CCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEE
Q 028595 3 LLAKLACLFATQVTSFLLYVLSVSGRS-SIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 81 (207)
Q Consensus 3 ~~~ki~iiG~~~~GgKssli~~l~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i 81 (207)
..+||+++|.+++| ||||+++|+++. +...+.+|.+. ....+.+++ +.+.+|||||++.+..++..+++++|+++
T Consensus 20 ~~~ki~v~G~~~~G-KSsli~~l~~~~~~~~~~~~t~~~-~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii 95 (190)
T 2h57_A 20 KEVHVLCLGLDNSG-KTTIINKLKPSNAQSQNILPTIGF-SIEKFKSSS--LSFTVFDMSGQGRYRNLWEHYYKEGQAII 95 (190)
T ss_dssp -CEEEEEEECTTSS-HHHHHHHTSCGGGCCSSCCCCSSE-EEEEEECSS--CEEEEEEECCSTTTGGGGGGGGGGCSEEE
T ss_pred CccEEEEECCCCCC-HHHHHHHHhcCCCCCCCcCCccce-eEEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEE
Confidence 36799999999999 999999999887 56677788763 344555555 78899999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhcC----CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHH--H---hCCc
Q 028595 82 LAFSLVSRASYENVLKKWIPELQHYS----PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRK--Q---IGAS 152 (207)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~~i~~~~----~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~--~---~~~~ 152 (207)
+|||+++++++..+ ..|+..+.... ++.|+++|+||+|+.+.. ..+++.+++. . .++
T Consensus 96 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~~~~- 161 (190)
T 2h57_A 96 FVIDSSDRLRMVVA-KEELDTLLNHPDIKHRRIPILFFANKMDLRDAV------------TSVKVSQLLCLENIKDKPW- 161 (190)
T ss_dssp EEEETTCHHHHHHH-HHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCC------------CHHHHHHHHTGGGCCSSCE-
T ss_pred EEEECCCHHHHHHH-HHHHHHHHhChhhccCCCeEEEEEeCcCcccCC------------CHHHHHHHhChhhccCCce-
Confidence 99999999999998 56666665432 479999999999996542 4555665553 1 234
Q ss_pred EEEEeccCCCCCHHHHHHHHHHHHhC
Q 028595 153 YYIECSSKTQQNVKAVFDAAIKVVIK 178 (207)
Q Consensus 153 ~~~e~Sa~~~~~i~~~f~~i~~~~~~ 178 (207)
+++++||++|.|++++|+++.+.+.+
T Consensus 162 ~~~~~Sa~~~~gi~~l~~~l~~~i~~ 187 (190)
T 2h57_A 162 HICASDAIKGEGLQEGVDWLQDQIQT 187 (190)
T ss_dssp EEEECBTTTTBTHHHHHHHHHHHC--
T ss_pred EEEEccCCCCcCHHHHHHHHHHHHHH
Confidence 89999999999999999999987643
No 89
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.97 E-value=1.1e-29 Score=187.16 Aligned_cols=154 Identities=15% Similarity=0.160 Sum_probs=126.5
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEE
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA 83 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v 83 (207)
..||+++|.+++| ||||++++.++.+. .+.||.+.. ...+.+++ +.+.+|||||++.++.++..+++++|++++|
T Consensus 23 ~~ki~~vG~~~vG-KSsli~~l~~~~~~-~~~~t~~~~-~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v 97 (190)
T 1m2o_B 23 HGKLLFLGLDNAG-KTTLLHMLKNDRLA-TLQPTWHPT-SEELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIVFL 97 (190)
T ss_dssp -CEEEEEESTTSS-HHHHHHHHHHSCCC-CCCCCCSCE-EEEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEEEE
T ss_pred ccEEEEECCCCCC-HHHHHHHHhcCCCC-ccccCCCCC-eEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEEEE
Confidence 5699999999999 99999999988864 567777664 44666676 7899999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhc--CCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHh-----------C
Q 028595 84 FSLVSRASYENVLKKWIPELQHY--SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI-----------G 150 (207)
Q Consensus 84 ~d~~~~~s~~~~~~~~~~~i~~~--~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-----------~ 150 (207)
||++++++++.+ ..|+..+... .++.|+++|+||+|+.+. +..+++.+++... .
T Consensus 98 ~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (190)
T 1m2o_B 98 VDAADPERFDEA-RVELDALFNIAELKDVPFVILGNKIDAPNA------------VSEAELRSALGLLNTTGSQRIEGQR 164 (190)
T ss_dssp EETTCGGGHHHH-HHHHHHHHTCGGGTTCCEEEEEECTTSTTC------------CCHHHHHHHTTCSSCCC---CCSSC
T ss_pred EECCChHHHHHH-HHHHHHHHcchhhcCCCEEEEEECCCCcCC------------CCHHHHHHHhCCccccccccccccc
Confidence 999999999998 6777666543 258999999999999752 2556666655432 2
Q ss_pred CcEEEEeccCCCCCHHHHHHHHHHH
Q 028595 151 ASYYIECSSKTQQNVKAVFDAAIKV 175 (207)
Q Consensus 151 ~~~~~e~Sa~~~~~i~~~f~~i~~~ 175 (207)
..+++++||++|.|++++|+++++.
T Consensus 165 ~~~~~~~Sa~~g~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 165 PVEVFMCSVVMRNGYLEAFQWLSQY 189 (190)
T ss_dssp CEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred eEEEEEeECCcCCCHHHHHHHHHhh
Confidence 2379999999999999999999754
No 90
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.97 E-value=3.3e-31 Score=190.23 Aligned_cols=155 Identities=11% Similarity=0.127 Sum_probs=120.8
Q ss_pred eeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEEE
Q 028595 5 AKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAF 84 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~ 84 (207)
+||+++|.+++| ||||+++|+++.+. .+.||.+.. ...+.. ..+.+.+|||||++.++.++..+++++|++++||
T Consensus 1 ~ki~~~G~~~~G-Kssl~~~l~~~~~~-~~~~t~~~~-~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 75 (164)
T 1r8s_A 1 MRILMVGLDAAG-KTTILYKLKLGEIV-TTIPTIGFN-VETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVV 75 (164)
T ss_dssp CEEEEECSTTSS-HHHHHHHHHHHCSS-CCCCCSSCC-EEEEEC--SSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEE
T ss_pred CEEEEECCCCCC-HHHHHHHHHcCCcC-cccCcCcee-EEEEEE--CCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEE
Confidence 489999999999 99999999988875 457777632 223333 3478999999999999999999999999999999
Q ss_pred eCCChhhHHHHHHHHHHHHhhc--CCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHH-----HHHHhCCcEEEEe
Q 028595 85 SLVSRASYENVLKKWIPELQHY--SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEE-----LRKQIGASYYIEC 157 (207)
Q Consensus 85 d~~~~~s~~~~~~~~~~~i~~~--~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~~~~~~~~e~ 157 (207)
|+++++++..+ ..|+..+... .++.|+++|+||+|+.+.. ..++... +++..++ +++++
T Consensus 76 d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~~~~-~~~~~ 141 (164)
T 1r8s_A 76 DSNDRERVNEA-REELMRMLAEDELRDAVLLVFANKQDLPNAM------------NAAEITDKLGLHSLRHRNW-YIQAT 141 (164)
T ss_dssp ETTCGGGHHHH-HHHHHHHHTCGGGTTCEEEEEEECTTSTTCC------------CHHHHHHHTTGGGCSSCCE-EEEEC
T ss_pred ECCCHHHHHHH-HHHHHHHHhchhhcCCeEEEEEECcCCcCCC------------CHHHHHHHhCcccccCccE-EEEEc
Confidence 99999999998 5676666443 2589999999999996542 2222211 1112233 79999
Q ss_pred ccCCCCCHHHHHHHHHHHHhC
Q 028595 158 SSKTQQNVKAVFDAAIKVVIK 178 (207)
Q Consensus 158 Sa~~~~~i~~~f~~i~~~~~~ 178 (207)
||++|.|++++|+++++.+.+
T Consensus 142 Sa~~~~gi~~l~~~l~~~i~~ 162 (164)
T 1r8s_A 142 CATSGDGLYEGLDWLSNQLRN 162 (164)
T ss_dssp BTTTTBTHHHHHHHHHHHC--
T ss_pred ccCCCcCHHHHHHHHHHHHhh
Confidence 999999999999999988753
No 91
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.97 E-value=3.7e-29 Score=185.57 Aligned_cols=164 Identities=26% Similarity=0.437 Sum_probs=143.1
Q ss_pred ccceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEE
Q 028595 2 ELLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVF 80 (207)
Q Consensus 2 ~~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~ 80 (207)
+..+||+++|.+++| ||||+++|++..+...+.||++..+ ...+.++|..+.+.+||++|++.++.++..++++++++
T Consensus 3 ~~~~kv~lvG~~g~G-KSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~ 81 (199)
T 2f9l_A 3 DYLFKVVLIGDSGVG-KSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGA 81 (199)
T ss_dssp SEEEEEEEESSTTSS-HHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEE
T ss_pred cceEEEEEECcCCCC-HHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEE
Confidence 357899999999999 9999999999988888889987666 55788899999999999999999999999999999999
Q ss_pred EEEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEecc
Q 028595 81 VLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSS 159 (207)
Q Consensus 81 i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa 159 (207)
++|||+++..++.++ ..|+..+.... .+.|+++++||+|+.+.+.+ ..++++.++...++ .++++||
T Consensus 82 i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~----------~~~~a~~l~~~~~~-~~~d~Sa 149 (199)
T 2f9l_A 82 LLVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNKSDLRHLRAV----------PTDEARAFAEKNNL-SFIETSA 149 (199)
T ss_dssp EEEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECTTCGGGCCS----------CHHHHHHHHHHTTC-EEEECCT
T ss_pred EEEEECcCHHHHHHH-HHHHHHHHHhcCCCCeEEEEEECcccccccCc----------CHHHHHHHHHHcCC-eEEEEeC
Confidence 999999999999988 67887776544 57899999999999776553 77889999999998 8999999
Q ss_pred CCCCCHHHHHHHHHHHHhC
Q 028595 160 KTQQNVKAVFDAAIKVVIK 178 (207)
Q Consensus 160 ~~~~~i~~~f~~i~~~~~~ 178 (207)
+++.|++++|+.+.+.+..
T Consensus 150 l~~~~i~~l~~~l~~~~~~ 168 (199)
T 2f9l_A 150 LDSTNVEEAFKNILTEIYR 168 (199)
T ss_dssp TTCTTHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 9999999999999988864
No 92
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.96 E-value=3.7e-31 Score=194.05 Aligned_cols=168 Identities=18% Similarity=0.256 Sum_probs=125.5
Q ss_pred ceeEEEEecccccceeeeeeeccCC--CCCccccCceeeeeee-EEEE---CCeEEEEEEEeCCCCccccccccceecCC
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGR--SSIWDYIPTVFDNFSA-NVVA---EGTTVNLGLWDTAGQEDYNRLRPLSYRGA 77 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~--~~~~~~~~t~~~~~~~-~~~~---~~~~~~l~i~D~~G~~~~~~~~~~~~~~~ 77 (207)
.+||+++|.++|| ||||+++|++. .+...+.+|++..+.. .+.+ ++..+.+.+|||+|++.+..++..+++++
T Consensus 2 ~~kv~ivG~~gvG-KStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~ 80 (184)
T 2zej_A 2 RMKLMIVGNTGSG-KTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQR 80 (184)
T ss_dssp -CEEEEESCTTSS-HHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHS
T ss_pred ceEEEEECCCCCC-HHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCC
Confidence 4799999999999 99999999985 4556678888766533 3333 34578899999999999999999999999
Q ss_pred cEEEEEEeCCCh-hhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCc---E
Q 028595 78 DVFVLAFSLVSR-ASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGAS---Y 153 (207)
Q Consensus 78 d~~i~v~d~~~~-~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~---~ 153 (207)
+++++|||++++ .++..+ ..|+..+....++.|+++||||+|+.+.+.+ ..+..+.++.+++.+++. +
T Consensus 81 ~~~i~v~d~~~~~~s~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~ 152 (184)
T 2zej_A 81 ALYLAVYDLSKGQAEVDAM-KPWLFNIKARASSSPVILVGTHLDVSDEKQR-------KACMSKITKELLNKRGFPAIRD 152 (184)
T ss_dssp EEEEEEEEGGGCHHHHHTH-HHHHHHHHHHCTTCEEEEEEECGGGCCHHHH-------HHHHHHHHHHTTTCTTSCEEEE
T ss_pred cEEEEEEeCCcchhHHHHH-HHHHHHHHhhCCCCcEEEEEECCCcccchhh-------HHHHHHHHHHHHHhcCCcchhh
Confidence 999999999997 578887 7898888776678999999999999765431 000134566777777873 3
Q ss_pred EEEeccCCCC-CHHHHHHHHHHHHhCCC
Q 028595 154 YIECSSKTQQ-NVKAVFDAAIKVVIKPP 180 (207)
Q Consensus 154 ~~e~Sa~~~~-~i~~~f~~i~~~~~~~~ 180 (207)
++++||+++. +++++++.+.+.+...+
T Consensus 153 ~~~~Sa~~~~~~~~~l~~~i~~~~~~~~ 180 (184)
T 2zej_A 153 YHFVNATEESDALAKLRKTIINESLNFK 180 (184)
T ss_dssp EEECCTTSCCHHHHHHHHHHHHHHHCC-
T ss_pred eEEEecccCchhHHHHHHHHHHHHhccc
Confidence 9999999996 99999999999887654
No 93
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.96 E-value=5.6e-30 Score=189.55 Aligned_cols=165 Identities=13% Similarity=0.167 Sum_probs=125.7
Q ss_pred cceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeee---EEEE-CCeEEEEEEEeCCCCccccccc---cceec
Q 028595 3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSA---NVVA-EGTTVNLGLWDTAGQEDYNRLR---PLSYR 75 (207)
Q Consensus 3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~---~~~~-~~~~~~l~i~D~~G~~~~~~~~---~~~~~ 75 (207)
..+||+++|.++|| ||||++++.+.. ... +|.+..+.. ...+ ++..+.+.+|||+|++.|..+. ..+++
T Consensus 19 ~~~ki~~vG~~~vG-KTsLi~~l~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~ 94 (196)
T 3llu_A 19 SKPRILLMGLRRSG-KSSIQKVVFHKM-SPN--ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFR 94 (196)
T ss_dssp -CCEEEEEESTTSS-HHHHHHHHHSCC-CGG--GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHHH
T ss_pred cceEEEEECCCCCC-HHHHHHHHHhcC-CCc--ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcccccc
Confidence 46899999999999 999999877653 322 444433322 2233 3667899999999999988776 89999
Q ss_pred CCcEEEEEEeCCCh--hhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHH----Hh
Q 028595 76 GADVFVLAFSLVSR--ASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRK----QI 149 (207)
Q Consensus 76 ~~d~~i~v~d~~~~--~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~----~~ 149 (207)
++|++|+|||++++ +++..+ ..|+..+....+++|+++||||+|+.+..... ...+.+..++++.+++ .+
T Consensus 95 ~~~~~i~v~d~~~~~~~~~~~~-~~~l~~~~~~~~~~piilv~nK~Dl~~~~~~~---~~~~~v~~~~~~~~~~~~~~~~ 170 (196)
T 3llu_A 95 GTGALIYVIDAQDDYMEALTRL-HITVSKAYKVNPDMNFEVFIHKVDGLSDDHKI---ETQRDIHQRANDDLADAGLEKL 170 (196)
T ss_dssp TCSEEEEEEETTSCCHHHHHHH-HHHHHHHHHHCTTCEEEEEEECGGGSCHHHHH---HHHHHHHHHHHHHHHHTTCTTS
T ss_pred cCCEEEEEEECCCchHHHHHHH-HHHHHHHHhcCCCCcEEEEEeccccCchhhhh---HHHhHHHHHHHHHHHHhhhhcC
Confidence 99999999999997 677776 57777765556799999999999986532100 0011246677888888 66
Q ss_pred CCcEEEEeccCCCCCHHHHHHHHHHHHh
Q 028595 150 GASYYIECSSKTQQNVKAVFDAAIKVVI 177 (207)
Q Consensus 150 ~~~~~~e~Sa~~~~~i~~~f~~i~~~~~ 177 (207)
++ +|+++||++ .|++++|..+++.++
T Consensus 171 ~~-~~~e~Sa~~-~~v~~~f~~l~~~li 196 (196)
T 3llu_A 171 HL-SFYLTSIYD-HSIFEAFSKVVQKLI 196 (196)
T ss_dssp CE-EEEEECTTS-THHHHHHHHHHHHTC
T ss_pred Cc-ceEEEEech-hhHHHHHHHHHHHhC
Confidence 76 899999999 999999999998763
No 94
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.96 E-value=7.6e-30 Score=186.64 Aligned_cols=157 Identities=18% Similarity=0.204 Sum_probs=123.1
Q ss_pred cceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEE
Q 028595 3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 82 (207)
Q Consensus 3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~ 82 (207)
...||+++|.+++| ||||+++|.++.+ ..+.||.+.. ...+..++ +.+.+|||||++.++.++..+++++|++++
T Consensus 15 ~~~ki~ivG~~~vG-KSsL~~~l~~~~~-~~~~~t~g~~-~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~ 89 (181)
T 1fzq_A 15 QEVRILLLGLDNAG-KTTLLKQLASEDI-SHITPTQGFN-IKSVQSQG--FKLNVWDIGGQRKIRPYWRSYFENTDILIY 89 (181)
T ss_dssp SCEEEEEEESTTSS-HHHHHHHHCCSCC-EEEEEETTEE-EEEEEETT--EEEEEEECSSCGGGHHHHHHHHTTCSEEEE
T ss_pred CceEEEEECCCCCC-HHHHHHHHhcCCC-CcccCcCCeE-EEEEEECC--EEEEEEECCCCHHHHHHHHHHhCCCCEEEE
Confidence 46899999999999 9999999998864 4566777733 33455554 788999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhc-C-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHH-----HHhCCcEEE
Q 028595 83 AFSLVSRASYENVLKKWIPELQHY-S-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELR-----KQIGASYYI 155 (207)
Q Consensus 83 v~d~~~~~s~~~~~~~~~~~i~~~-~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~~~~~~~~ 155 (207)
|||+++++++..+ ..|+..+... . ++.|+++|+||+|+.+.. ..++..+.. ...++ +++
T Consensus 90 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~------------~~~~~~~~~~~~~~~~~~~-~~~ 155 (181)
T 1fzq_A 90 VIDSADRKRFEET-GQELTELLEEEKLSCVPVLIFANKQDLLTAA------------PASEIAEGLNLHTIRDRVW-QIQ 155 (181)
T ss_dssp EEETTCGGGHHHH-HHHHHHHTTCGGGTTCCEEEEEECTTSTTCC------------CHHHHHHHTTGGGCCSSCE-EEE
T ss_pred EEECcCHHHHHHH-HHHHHHHHhChhhcCCCEEEEEECcCcccCC------------CHHHHHHHhCchhccCCce-EEE
Confidence 9999999999998 5666655332 2 589999999999997653 222222221 11233 799
Q ss_pred EeccCCCCCHHHHHHHHHHHHhC
Q 028595 156 ECSSKTQQNVKAVFDAAIKVVIK 178 (207)
Q Consensus 156 e~Sa~~~~~i~~~f~~i~~~~~~ 178 (207)
++||++|.|++++|+++++.+.+
T Consensus 156 ~~Sa~~g~gi~~l~~~l~~~~~~ 178 (181)
T 1fzq_A 156 SCSALTGEGVQDGMNWVCKNVNA 178 (181)
T ss_dssp ECCTTTCTTHHHHHHHHHHTC--
T ss_pred EccCCCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999987754
No 95
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.96 E-value=3.3e-30 Score=190.31 Aligned_cols=156 Identities=10% Similarity=0.113 Sum_probs=118.2
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEE
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA 83 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v 83 (207)
.+||+++|.+++| ||||+++|+++.+. .+.||.+.. ...+..++ +.+.+|||||++.+..++..+++++|++++|
T Consensus 29 ~~ki~v~G~~~vG-KSsLi~~l~~~~~~-~~~~t~~~~-~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilv 103 (192)
T 2b6h_A 29 QMRILMVGLDAAG-KTTILYKLKLGEIV-TTIPTIGFN-VETVEYKN--ICFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 103 (192)
T ss_dssp CEEEEEEESTTSS-HHHHHHHHCSSCCE-EEEEETTEE-EEEEEETT--EEEEEEECC-----CTTHHHHHHTCCEEEEE
T ss_pred ccEEEEECCCCCC-HHHHHHHHHhCCcc-ccCCcCcee-EEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEEEE
Confidence 5799999999999 99999999988875 456776622 33444444 7899999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcC--CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHH-----HHHHhCCcEEEE
Q 028595 84 FSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEE-----LRKQIGASYYIE 156 (207)
Q Consensus 84 ~d~~~~~s~~~~~~~~~~~i~~~~--~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~~~~~~~~e 156 (207)
||+++++++..+ ..|+..+.... ++.|+++|+||+|+.+.. ..++... ++...++ ++++
T Consensus 104 ~D~~~~~s~~~~-~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~------------~~~~i~~~~~~~~~~~~~~-~~~~ 169 (192)
T 2b6h_A 104 VDSNDRERVQES-ADELQKMLQEDELRDAVLLVFANKQDMPNAM------------PVSELTDKLGLQHLRSRTW-YVQA 169 (192)
T ss_dssp EETTCGGGHHHH-HHHHHHHHTCGGGTTCEEEEEEECTTSTTCC------------CHHHHHHHTTGGGCSSCCE-EEEE
T ss_pred EECCCHHHHHHH-HHHHHHHhcccccCCCeEEEEEECCCCCCCC------------CHHHHHHHhCcccccCCce-EEEE
Confidence 999999999998 67766664432 589999999999996542 2222111 1112233 7999
Q ss_pred eccCCCCCHHHHHHHHHHHHhC
Q 028595 157 CSSKTQQNVKAVFDAAIKVVIK 178 (207)
Q Consensus 157 ~Sa~~~~~i~~~f~~i~~~~~~ 178 (207)
+||++|.|++++|+++++.+.+
T Consensus 170 ~SA~~g~gi~~l~~~l~~~i~~ 191 (192)
T 2b6h_A 170 TCATQGTGLYDGLDWLSHELSK 191 (192)
T ss_dssp CBTTTTBTHHHHHHHHHHHTTT
T ss_pred CcCCCcCCHHHHHHHHHHHHhc
Confidence 9999999999999999988753
No 96
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.96 E-value=1.2e-29 Score=185.46 Aligned_cols=154 Identities=14% Similarity=0.134 Sum_probs=124.3
Q ss_pred cceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEE
Q 028595 3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 82 (207)
Q Consensus 3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~ 82 (207)
..+||+++|.+++| ||||+++|+++.+ ..+.+|.+..+ ..+.+++ +.+.+|||||++.+..++..+++++|++++
T Consensus 20 ~~~~i~v~G~~~~G-KSsli~~l~~~~~-~~~~~t~~~~~-~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~ 94 (181)
T 2h17_A 20 QEHKVIIVGLDNAG-KTTILYQFSMNEV-VHTSPTIGSNV-EEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVIV 94 (181)
T ss_dssp -CEEEEEEEETTSS-HHHHHHHHHTTSC-EEEECCSSSSC-EEEEETT--EEEEEEEESSSGGGTCGGGGGGTTCCEEEE
T ss_pred ceeEEEEECCCCCC-HHHHHHHHhcCCC-CccCCcCceee-EEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence 35799999999999 9999999999987 66778877443 4455565 789999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhc--CCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHH-----HhCCcEEE
Q 028595 83 AFSLVSRASYENVLKKWIPELQHY--SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRK-----QIGASYYI 155 (207)
Q Consensus 83 v~d~~~~~s~~~~~~~~~~~i~~~--~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~-----~~~~~~~~ 155 (207)
|||+++++++..+ ..|+..+... ..+.|+++|+||+|+.+.. ..++..+... ..++ +++
T Consensus 95 v~D~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~------------~~~~i~~~~~~~~~~~~~~-~~~ 160 (181)
T 2h17_A 95 VVDSTDRERISVT-REELYKMLAHEDLRKAGLLIFANKQDVKECM------------TVAEISQFLKLTSIKDHQW-HIQ 160 (181)
T ss_dssp EEETTCTTTHHHH-HHHHHHHHTCGGGTTCEEEEEEECTTSTTCC------------CHHHHHHHTTGGGCCSSCE-EEE
T ss_pred EEECCCHHHHHHH-HHHHHHHHhChhhCCCeEEEEEECCCcccCC------------CHHHHHHHhCcccccCCce-EEE
Confidence 9999999999998 5666655443 2689999999999996542 3333333322 2334 899
Q ss_pred EeccCCCCCHHHHHHHHHHH
Q 028595 156 ECSSKTQQNVKAVFDAAIKV 175 (207)
Q Consensus 156 e~Sa~~~~~i~~~f~~i~~~ 175 (207)
++||++|.|++++|++|++.
T Consensus 161 ~~Sa~~g~gi~~l~~~l~~~ 180 (181)
T 2h17_A 161 ACCALTGEGLCQGLEWMMSR 180 (181)
T ss_dssp ECBTTTTBTHHHHHHHHHTC
T ss_pred EccCCCCcCHHHHHHHHHhh
Confidence 99999999999999999754
No 97
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.96 E-value=4.1e-30 Score=189.02 Aligned_cols=158 Identities=20% Similarity=0.219 Sum_probs=125.7
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEE
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA 83 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v 83 (207)
.+||+++|.+++| ||||+++|+++.+...+.||++..+.. +..+ .+.+.+|||||++.+..++..+++++|++|+|
T Consensus 22 ~~ki~v~G~~~~G-KSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v 97 (188)
T 1zd9_A 22 EMELTLVGLQYSG-KTTFVNVIASGQFNEDMIPTVGFNMRK-ITKG--NVTIKLWDIGGQPRFRSMWERYCRGVSAIVYM 97 (188)
T ss_dssp EEEEEEECSTTSS-HHHHHHHHHHSCCCCSCCCCCSEEEEE-EEET--TEEEEEEEECCSHHHHTTHHHHHTTCSEEEEE
T ss_pred ccEEEEECCCCCC-HHHHHHHHHcCCCCCccCCCCceeEEE-EEeC--CEEEEEEECCCCHhHHHHHHHHHccCCEEEEE
Confidence 5799999999999 999999999999888888998876643 3333 57889999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhc--CCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHH-----HHhCCcEEEE
Q 028595 84 FSLVSRASYENVLKKWIPELQHY--SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELR-----KQIGASYYIE 156 (207)
Q Consensus 84 ~d~~~~~s~~~~~~~~~~~i~~~--~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~~~~~~~~e 156 (207)
||+++++++..+ ..|+..+... ..+.|+++|+||+|+.+.. ..++..... ...+. ++++
T Consensus 98 ~D~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~------------~~~~~~~~~~~~~~~~~~~-~~~~ 163 (188)
T 1zd9_A 98 VDAADQEKIEAS-KNELHNLLDKPQLQGIPVLVLGNKRDLPGAL------------DEKELIEKMNLSAIQDREI-CCYS 163 (188)
T ss_dssp EETTCGGGHHHH-HHHHHHHHTCGGGTTCCEEEEEECTTSTTCC------------CHHHHHHHTTGGGCCSSCE-EEEE
T ss_pred EECCCHHHHHHH-HHHHHHHHhCcccCCCCEEEEEECCCCccCC------------CHHHHHHHhChhhhccCCe-eEEE
Confidence 999999999998 5666655433 2689999999999997542 222211111 11233 7899
Q ss_pred eccCCCCCHHHHHHHHHHHHhCC
Q 028595 157 CSSKTQQNVKAVFDAAIKVVIKP 179 (207)
Q Consensus 157 ~Sa~~~~~i~~~f~~i~~~~~~~ 179 (207)
+||++|.|++++|+++++.+...
T Consensus 164 ~SA~~g~gv~~l~~~l~~~~~~~ 186 (188)
T 1zd9_A 164 ISCKEKDNIDITLQWLIQHSKSR 186 (188)
T ss_dssp CCTTTCTTHHHHHHHHHHTCC--
T ss_pred EECCCCCCHHHHHHHHHHHHHhh
Confidence 99999999999999999877543
No 98
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.96 E-value=1e-29 Score=186.83 Aligned_cols=158 Identities=15% Similarity=0.116 Sum_probs=124.8
Q ss_pred cceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEE
Q 028595 3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 82 (207)
Q Consensus 3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~ 82 (207)
..+||+++|.+++| ||||+++|.++.+. .+.||.+.. ...+..++ +.+.+|||||++.+..++..+++++|++++
T Consensus 21 ~~~~i~v~G~~~~G-Kssli~~l~~~~~~-~~~~t~~~~-~~~~~~~~--~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~ 95 (189)
T 2x77_A 21 RKIRVLMLGLDNAG-KTSILYRLHLGDVV-TTVPTVGVN-LETLQYKN--ISFEVWDLGGQTGVRPYWRCYFSDTDAVIY 95 (189)
T ss_dssp SCEEEEEEEETTSS-HHHHHHHTCCSCCE-EECSSTTCC-EEEEEETT--EEEEEEEECCSSSSCCCCSSSSTTCCEEEE
T ss_pred CceEEEEECCCCCC-HHHHHHHHHcCCCC-CcCCCCceE-EEEEEECC--EEEEEEECCCCHhHHHHHHHHhhcCCEEEE
Confidence 46899999999999 99999999988865 466777632 33455554 788999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhcC--CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHH-----HHHHhCCcEEE
Q 028595 83 AFSLVSRASYENVLKKWIPELQHYS--PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEE-----LRKQIGASYYI 155 (207)
Q Consensus 83 v~d~~~~~s~~~~~~~~~~~i~~~~--~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~~~~~~~~ 155 (207)
|||+++++++..+ ..|+..+.... ++.|+++|+||+|+.+... .++... .+...++ +++
T Consensus 96 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~------------~~~~~~~~~~~~~~~~~~-~~~ 161 (189)
T 2x77_A 96 VVDSTDRDRMGVA-KHELYALLDEDELRKSLLLIFANKQDLPDAAS------------EAEIAEQLGVSSIMNRTW-TIV 161 (189)
T ss_dssp EEETTCCTTHHHH-HHHHHHHHTCSTTTTCEEEEEEECTTSTTCCC------------HHHHHHHTTGGGCCSSCE-EEE
T ss_pred EEeCCCHHHHHHH-HHHHHHHHhhhhcCCCeEEEEEECCCCcCCCC------------HHHHHHHhChhhccCCce-EEE
Confidence 9999999999998 56655554332 5899999999999976532 122221 2222344 799
Q ss_pred EeccCCCCCHHHHHHHHHHHHhCC
Q 028595 156 ECSSKTQQNVKAVFDAAIKVVIKP 179 (207)
Q Consensus 156 e~Sa~~~~~i~~~f~~i~~~~~~~ 179 (207)
++||+++.|++++|+++.+.+.+.
T Consensus 162 ~~Sa~~~~gi~~l~~~l~~~i~~~ 185 (189)
T 2x77_A 162 KSSSKTGDGLVEGMDWLVERLREQ 185 (189)
T ss_dssp ECCTTTCTTHHHHHHHHHHHHHHT
T ss_pred EccCCCccCHHHHHHHHHHHHHhc
Confidence 999999999999999999988643
No 99
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.96 E-value=1.4e-28 Score=181.47 Aligned_cols=161 Identities=26% Similarity=0.436 Sum_probs=143.7
Q ss_pred cceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEE
Q 028595 3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 81 (207)
Q Consensus 3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i 81 (207)
..+||+++|.+++| ||||++++++..+...+.||++.++ ...+.++|..+.+.+||++|++++..++..+++++++++
T Consensus 28 ~~~kv~lvG~~g~G-KSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i 106 (191)
T 1oix_A 28 YLFKVVLIGDSGVG-KSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGAL 106 (191)
T ss_dssp EEEEEEEEECTTSS-HHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEE
T ss_pred cceEEEEECcCCCC-HHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEE
Confidence 45899999999999 9999999999988888889998777 558889999999999999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccC
Q 028595 82 LAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK 160 (207)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~ 160 (207)
+|||+++..+++.+ ..|+..+.... .+.|+++++||.|+.+.... ..++++.++...++ .++++||+
T Consensus 107 ~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~~~----------~~~~a~~l~~~~~~-~~ld~Sal 174 (191)
T 1oix_A 107 LVYDIAKHLTYENV-ERWLKELRDHADSNIVIMLVGNKSDLRHLRAV----------PTDEARAFAEKNGL-SFIETSAL 174 (191)
T ss_dssp EEEETTCHHHHHTH-HHHHHHHHHHSCTTCEEEEEEECGGGGGGCCS----------CHHHHHHHHHHTTC-EEEECCTT
T ss_pred EEEECcCHHHHHHH-HHHHHHHHHhcCCCCcEEEEEECccccccccc----------CHHHHHHHHHHcCC-EEEEEeCC
Confidence 99999999999887 67877776543 57899999999999765543 77889999999998 89999999
Q ss_pred CCCCHHHHHHHHHHHH
Q 028595 161 TQQNVKAVFDAAIKVV 176 (207)
Q Consensus 161 ~~~~i~~~f~~i~~~~ 176 (207)
++.+++++|+.+.+.+
T Consensus 175 d~~~v~~l~~~l~~~i 190 (191)
T 1oix_A 175 DSTNVEAAFQTILTEI 190 (191)
T ss_dssp TCTTHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHh
Confidence 9999999999998865
No 100
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.96 E-value=9.6e-29 Score=180.48 Aligned_cols=157 Identities=11% Similarity=0.082 Sum_probs=123.3
Q ss_pred cceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEE
Q 028595 3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 82 (207)
Q Consensus 3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~ 82 (207)
...||+++|.+++| ||||+++++++.+ ..+.||.+.. ...+.+++ +.+.+|||||++.+...+..+++++|++++
T Consensus 17 ~~~~i~v~G~~~~G-Kssli~~l~~~~~-~~~~~t~~~~-~~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~ 91 (183)
T 1moz_A 17 KELRILILGLDGAG-KTTILYRLQIGEV-VTTKPTIGFN-VETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAVIF 91 (183)
T ss_dssp SCEEEEEEEETTSS-HHHHHHHTCCSEE-EEECSSTTCC-EEEEEETT--EEEEEEEEC----CCTTGGGTTTTEEEEEE
T ss_pred CccEEEEECCCCCC-HHHHHHHHhcCCc-CccCCcCccc-eEEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEEE
Confidence 46799999999999 9999999998887 6677887733 34455555 789999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhc--CCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHH-----hCCcEEE
Q 028595 83 AFSLVSRASYENVLKKWIPELQHY--SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ-----IGASYYI 155 (207)
Q Consensus 83 v~d~~~~~s~~~~~~~~~~~i~~~--~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~-----~~~~~~~ 155 (207)
|||++++++++.+ ..|+..+... .++.|+++|+||+|+.+.. ..++..+.... .++ +++
T Consensus 92 v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~------------~~~~i~~~~~~~~~~~~~~-~~~ 157 (183)
T 1moz_A 92 VVDSTDKDRMSTA-SKELHLMLQEEELQDAALLVFANKQDQPGAL------------SASEVSKELNLVELKDRSW-SIV 157 (183)
T ss_dssp EEETTCTTTHHHH-HHHHHHHTTSSTTSSCEEEEEEECTTSTTCC------------CHHHHHHHTTTTTCCSSCE-EEE
T ss_pred EEECCCHHHHHHH-HHHHHHHHcChhhCCCeEEEEEECCCCCCCC------------CHHHHHHHhCcccccCCce-EEE
Confidence 9999999999998 6676666554 2689999999999996542 33343333322 123 799
Q ss_pred EeccCCCCCHHHHHHHHHHHHhC
Q 028595 156 ECSSKTQQNVKAVFDAAIKVVIK 178 (207)
Q Consensus 156 e~Sa~~~~~i~~~f~~i~~~~~~ 178 (207)
++||++|.|++++|+++.+.+.+
T Consensus 158 ~~Sa~~~~gi~~l~~~l~~~~~~ 180 (183)
T 1moz_A 158 ASSAIKGEGITEGLDWLIDVIKE 180 (183)
T ss_dssp EEBGGGTBTHHHHHHHHHHHHHH
T ss_pred EccCCCCcCHHHHHHHHHHHHHh
Confidence 99999999999999999988753
No 101
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.96 E-value=2.3e-30 Score=203.37 Aligned_cols=169 Identities=12% Similarity=0.079 Sum_probs=127.7
Q ss_pred eEEEEecccccceeeeeeeccCCCCCc---cccCceeeeeeeEEEECCeEEEEEEEeCCCCccccc---cccceecCCcE
Q 028595 6 KLACLFATQVTSFLLYVLSVSGRSSIW---DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNR---LRPLSYRGADV 79 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~---~~~~~~~~~d~ 79 (207)
||+++|..+|| ||||++++.++-... .+.||++..+.. ++ ..+.++||||+||++|+. .+..|++++++
T Consensus 1 KIvllGdsgvG-KTSLl~~~~~~~~~~~~~~~~~Tig~~~~~---v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~ 75 (331)
T 3r7w_B 1 MVLLMGVRRCG-KSSICKVVFHNMQPLDTLYLESTSNPSLEH---FS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGA 75 (331)
T ss_dssp CEEEECSTTSS-TTHHHHHHHSCCCSGGGTTCCCCCSCCCEE---EC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSE
T ss_pred CEEEECCCCCC-HHHHHHHHHcCCCCCccceecCeeeeeeEE---Ec-cEEEEEEEECCCchhccchhhhhhhhccCCCE
Confidence 79999999999 999999887664332 356888776643 23 358899999999999974 36899999999
Q ss_pred EEEEEeCCCh--hhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHH----hCCcE
Q 028595 80 FVLAFSLVSR--ASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ----IGASY 153 (207)
Q Consensus 80 ~i~v~d~~~~--~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~----~~~~~ 153 (207)
+|+|||++++ ++...+ ..|+..+....+++|++++|||+|+...... ....+.+..++++++++. +++ +
T Consensus 76 ~IlV~Ditd~~~~~~~~l-~~~l~~~~~~~~~ipillvgNK~DL~~~~~R---~~~~R~V~~~~~~~la~~~~~~~~i-~ 150 (331)
T 3r7w_B 76 LVYVIDSQDEYINAITNL-AMIIEYAYKVNPSINIEVLIHKVDGLSEDFK---VDAQRDIMQRTGEELLELGLDGVQV-S 150 (331)
T ss_dssp EEEECCCSSCTTHHHHHH-HHHHHHHHHHCTTCEEEEECCCCCSSCSHHH---HHHHHHHHHHHHHTTSSSSCSCCCE-E
T ss_pred EEEEEECCchHHHHHHHH-HHHHHHHhhcCCCCcEEEEEECcccCchhhh---hhHHHHhhHHHHHHHHhhcccccCc-e
Confidence 9999999998 333333 3445555555689999999999999764210 000112477788888886 566 9
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHhCCCcchhh
Q 028595 154 YIECSSKTQQNVKAVFDAAIKVVIKPPQKQKE 185 (207)
Q Consensus 154 ~~e~Sa~~~~~i~~~f~~i~~~~~~~~~~~~~ 185 (207)
|++|||++ .+|.++|..+++.+++..+..+.
T Consensus 151 f~eTSAkd-~nV~eAFs~iv~~li~~~~~le~ 181 (331)
T 3r7w_B 151 FYLTSIFD-HSIYEAFSRIVQKLIPELSFLEN 181 (331)
T ss_dssp EECCCSSS-SHHHHHHHHHHTTSSTTHHHHHH
T ss_pred EEEeccCC-CcHHHHHHHHHHHHHhhHHHHHH
Confidence 99999998 69999999999999876554433
No 102
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.95 E-value=3.6e-29 Score=192.65 Aligned_cols=160 Identities=14% Similarity=0.172 Sum_probs=125.8
Q ss_pred cceeEEEEecc---------cccceeeeeeeccC---CCCCccccCce-eeeee-eEE--------------EECCeEEE
Q 028595 3 LLAKLACLFAT---------QVTSFLLYVLSVSG---RSSIWDYIPTV-FDNFS-ANV--------------VAEGTTVN 54 (207)
Q Consensus 3 ~~~ki~iiG~~---------~~GgKssli~~l~~---~~~~~~~~~t~-~~~~~-~~~--------------~~~~~~~~ 54 (207)
..+||+++|.+ +|| ||||+++|++ +.+...+.||+ +..+. ..+ .+++..+.
T Consensus 18 ~~~ki~lvG~~~~~~~~~~~~vG-KSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ 96 (255)
T 3c5h_A 18 GTYNISVVGLSGTEKEKGQCGIG-KSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVECK 96 (255)
T ss_dssp SCEEEEEEESCCCTTTTTTCCCS-HHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC---------C
T ss_pred ceeEEEEECCCccccccCCCCcC-HHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcEEE
Confidence 35899999999 999 9999999999 56667777776 44432 222 25678899
Q ss_pred EEEEe-----------------------CCCCccccccccceec---------------------CCcEEEEEEeCCCh-
Q 028595 55 LGLWD-----------------------TAGQEDYNRLRPLSYR---------------------GADVFVLAFSLVSR- 89 (207)
Q Consensus 55 l~i~D-----------------------~~G~~~~~~~~~~~~~---------------------~~d~~i~v~d~~~~- 89 (207)
+.||| ++|++++..++..++. ++|++|+|||++++
T Consensus 97 l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~~ 176 (255)
T 3c5h_A 97 MHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRGM 176 (255)
T ss_dssp EEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC--
T ss_pred EEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCCCc
Confidence 99999 7788888889998888 79999999999998
Q ss_pred -hhHHHHHHHHHHHHhhc--CCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHh-CCcEEEEeccCCCCCH
Q 028595 90 -ASYENVLKKWIPELQHY--SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI-GASYYIECSSKTQQNV 165 (207)
Q Consensus 90 -~s~~~~~~~~~~~i~~~--~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~~~e~Sa~~~~~i 165 (207)
++++.+ ..|+..+... .+++|+++|+||+|+.+.+. .++++++++.. ++ +++++||++|.|+
T Consensus 177 ~~s~~~~-~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~------------v~~~~~~~~~~~~~-~~~e~SAk~g~gv 242 (255)
T 3c5h_A 177 NRNFDDQ-LKFVSNLYNQLAKTKKPIVVVLTKCDEGVERY------------IRDAHTFALSKKNL-QVVETSARSNVNV 242 (255)
T ss_dssp --CHHHH-HHHHHHHHHHHHHTTCCEEEEEECGGGBCHHH------------HHHHHHHHHTSSSC-CEEECBTTTTBSH
T ss_pred hhhHHHH-HHHHHHHHHHhccCCCCEEEEEEcccccccHH------------HHHHHHHHHhcCCC-eEEEEECCCCCCH
Confidence 999998 7888887654 26899999999999965442 36788888774 66 8999999999999
Q ss_pred HHHHHHHHHHHh
Q 028595 166 KAVFDAAIKVVI 177 (207)
Q Consensus 166 ~~~f~~i~~~~~ 177 (207)
+++|+++++.+.
T Consensus 243 ~elf~~l~~~l~ 254 (255)
T 3c5h_A 243 DLAFSTLVQLID 254 (255)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc
Confidence 999999998764
No 103
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.95 E-value=1.3e-28 Score=184.33 Aligned_cols=162 Identities=13% Similarity=0.036 Sum_probs=117.3
Q ss_pred cceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCe-EEEEEEEeCCCCccccc-cccceecCCcEE
Q 028595 3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGT-TVNLGLWDTAGQEDYNR-LRPLSYRGADVF 80 (207)
Q Consensus 3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~l~i~D~~G~~~~~~-~~~~~~~~~d~~ 80 (207)
...||+++|.+++| ||||+++|+++.+...+.++....+. +.+++. .+.+.+|||||++.+.. ++..|++++|++
T Consensus 6 ~~~ki~vvG~~~~G-KTsli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~ 82 (214)
T 2fh5_B 6 SQRAVLFVGLCDSG-KTLLFVRLLTGQYRDTQTSITDSSAI--YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAV 82 (214)
T ss_dssp --CEEEEECSTTSS-HHHHHHHHHHSCCCCBCCCCSCEEEE--EECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEE
T ss_pred CCCEEEEECCCCCC-HHHHHHHHhCCCcccccCCcceeeEE--EEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCEE
Confidence 36899999999999 99999999999888777655433222 555644 68899999999999987 888899999999
Q ss_pred EEEEeCCChh-hHHHHHHHHHHHHhhc---CCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHH------------
Q 028595 81 VLAFSLVSRA-SYENVLKKWIPELQHY---SPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEE------------ 144 (207)
Q Consensus 81 i~v~d~~~~~-s~~~~~~~~~~~i~~~---~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~------------ 144 (207)
++|||+++.+ ++......|...+... .+++|+++|+||+|+.+.... ....+....
T Consensus 83 i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~--------~~~~~~l~~~l~~~~~~~~~~ 154 (214)
T 2fh5_B 83 VFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSA--------KLIQQQLEKELNTLRVTRSAA 154 (214)
T ss_dssp EEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCH--------HHHHHHHHHHHHHHHHHCC--
T ss_pred EEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccH--------HHHHHHHHHHHHHHhccchhc
Confidence 9999999964 4666645566555442 257999999999999765421 001111111
Q ss_pred --------------------HHHHhC--CcEEEEeccCCC------CCHHHHHHHHHHH
Q 028595 145 --------------------LRKQIG--ASYYIECSSKTQ------QNVKAVFDAAIKV 175 (207)
Q Consensus 145 --------------------~~~~~~--~~~~~e~Sa~~~------~~i~~~f~~i~~~ 175 (207)
|+.+.. ..+|++|||++| .||+++|++|.+.
T Consensus 155 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~ 213 (214)
T 2fh5_B 155 PSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI 213 (214)
T ss_dssp ----------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred cccccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence 111110 348999999999 9999999999875
No 104
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.95 E-value=2.3e-27 Score=172.34 Aligned_cols=158 Identities=12% Similarity=0.141 Sum_probs=120.1
Q ss_pred cceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEE
Q 028595 3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 81 (207)
Q Consensus 3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i 81 (207)
...||+++|.+++| ||||+++|+++.+...+.++.+..+ ...+.+++. .+.+|||||++.+..++..++..+|+++
T Consensus 7 ~~~~i~v~G~~~~G-Kssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~d~~i 83 (178)
T 2lkc_A 7 RPPVVTIMGHVDHG-KTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDK--KITFLDTPGHEAFTTMRARGAQVTDIVI 83 (178)
T ss_dssp CCCEEEEESCTTTT-HHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTE--EEEESCCCSSSSSSCSCCSSCCCCCEEE
T ss_pred CCCEEEEECCCCCC-HHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCc--eEEEEECCCCHHHHHHHHHHHhhCCEEE
Confidence 46799999999999 9999999999998877777766555 446677774 4679999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCC--------cE
Q 028595 82 LAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA--------SY 153 (207)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--------~~ 153 (207)
+|||+++....... .++..+.. .++|+++|+||+|+.+.. .++.....+..+. .+
T Consensus 84 ~v~d~~~~~~~~~~--~~l~~~~~--~~~p~ilv~nK~Dl~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~ 146 (178)
T 2lkc_A 84 LVVAADDGVMPQTV--EAINHAKA--ANVPIIVAINKMDKPEAN-------------PDRVMQELMEYNLVPEEWGGDTI 146 (178)
T ss_dssp EEEETTCCCCHHHH--HHHHHHGG--GSCCEEEEEETTTSSCSC-------------HHHHHHHHTTTTCCBTTTTSSEE
T ss_pred EEEECCCCCcHHHH--HHHHHHHh--CCCCEEEEEECccCCcCC-------------HHHHHHHHHhcCcChhHcCCccc
Confidence 99999984333322 12223322 379999999999997532 2222222222221 38
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHhCCC
Q 028595 154 YIECSSKTQQNVKAVFDAAIKVVIKPP 180 (207)
Q Consensus 154 ~~e~Sa~~~~~i~~~f~~i~~~~~~~~ 180 (207)
++++||++|.|++++|+++++.+...+
T Consensus 147 ~~~~Sa~~~~gv~~l~~~l~~~~~~~~ 173 (178)
T 2lkc_A 147 FCKLSAKTKEGLDHLLEMILLVSEMEE 173 (178)
T ss_dssp EEECCSSSSHHHHHHHHHHHHHHHHTT
T ss_pred EEEEecCCCCCHHHHHHHHHHhhhhhc
Confidence 999999999999999999998876543
No 105
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.95 E-value=1e-27 Score=189.19 Aligned_cols=166 Identities=16% Similarity=0.191 Sum_probs=132.8
Q ss_pred ceeEEEEecccccceeeeeeeccCCC--CC-ccccCceeeeeeeEEEECCeEEEEEEEeCCCCccc-----cccccceec
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRS--SI-WDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY-----NRLRPLSYR 75 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~--~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~-----~~~~~~~~~ 75 (207)
.+||+++|.+++| ||||+++|+++. +. ..+.+|++..+. .+.+++ .+.+.+|||||++.+ ..++..+++
T Consensus 3 ~~KI~lvG~~~vG-KSSLi~~l~~~~~~~~~~~~~~Ti~~~~~-~~~~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ 79 (307)
T 3r7w_A 3 GSKLLLMGRSGSG-KSSMRSIIFSNYSAFDTRRLGATIDVEHS-HLRFLG-NMTLNLWDCGGQDVFMENYFTKQKDHIFQ 79 (307)
T ss_dssp EEEEEEECCTTSS-HHHHHHHHHSCCCTGGGGGCCCCCSEEEE-EEEETT-TEEEEEEEECCSHHHHHHHHTTTHHHHHT
T ss_pred ceEEEEECCCCCC-HHHHHHHHHhCCCCccccCcCCccceEEE-EEEeCC-ceEEEEEECCCcHHHhhhhhhhHHHHHhc
Confidence 5799999999999 999999998873 22 256677766554 333444 688999999999998 788899999
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHH---HHhhcCCCCcEEEEeeCCCccc--CcccccCCCCCcccCHHHHHHHHHHhC
Q 028595 76 GADVFVLAFSLVSRASYENVLKKWIP---ELQHYSPGVPVVLVGTKLDLRE--DKHYLADHPGLVPVTTAQGEELRKQIG 150 (207)
Q Consensus 76 ~~d~~i~v~d~~~~~s~~~~~~~~~~---~i~~~~~~~piivv~nK~D~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~ 150 (207)
++|++|+|||++++++++++ ..|.. .+....+++|+++|+||+|+.+ .+.. ...+..++++++++.+|
T Consensus 80 ~ad~vi~V~D~t~~~s~~~l-~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~------~~~v~~~~~~~~~~~~g 152 (307)
T 3r7w_A 80 MVQVLIHVFDVESTEVLKDI-EIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREE------LFQIMMKNLSETSSEFG 152 (307)
T ss_dssp TCSEEEEEEETTCSCHHHHH-HHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHH------HHHHHHHHHHHHHHTTT
T ss_pred cCCEEEEEEECCChhhHHHH-HHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhH------HHHHHHHHHHHHHHHcC
Confidence 99999999999999999988 56644 4444457899999999999976 3320 00025688999999998
Q ss_pred C--cEEEEeccCCCCCHHHHHHHHHHHHhCCC
Q 028595 151 A--SYYIECSSKTQQNVKAVFDAAIKVVIKPP 180 (207)
Q Consensus 151 ~--~~~~e~Sa~~~~~i~~~f~~i~~~~~~~~ 180 (207)
. .+++++||++ .++.++|..+++.+....
T Consensus 153 ~~~~~~~~tSa~~-~~i~e~~~~iv~~li~~~ 183 (307)
T 3r7w_A 153 FPNLIGFPTSIWD-ESLYKAWSQIVCSLIPNM 183 (307)
T ss_dssp CCSCEEEECCTTS-SHHHHHHHHHHHTTCSCH
T ss_pred CCCeEEEEeeecC-ChHHHHHHHHHHHHcCCH
Confidence 3 4999999999 899999999999887654
No 106
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.95 E-value=7.1e-28 Score=191.68 Aligned_cols=158 Identities=11% Similarity=0.122 Sum_probs=117.3
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEE
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLA 83 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v 83 (207)
.+||+++|.+++| ||||+++|.++.+...+ ||.+..+. .+..+ .+.+.||||||++.+..++..+++++|++|+|
T Consensus 165 ~~kI~ivG~~~vG-KSsLl~~l~~~~~~~~~-pT~~~~~~-~~~~~--~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV 239 (329)
T 3o47_A 165 EMRILMVGLDAAG-KTTILYKLKLGEIVTTI-PTIGFNVE-TVEYK--NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFV 239 (329)
T ss_dssp SEEEEEEESTTSS-HHHHHHHTCSSCCEEEE-EETTEEEE-EEEET--TEEEEEEECC-----CCSHHHHHTTEEEEEEE
T ss_pred cceEEEECCCCcc-HHHHHHHHhCCCCCCcc-cccceEEE-EEecC--cEEEEEEECCCCHhHHHHHHHHhccCCEEEEE
Confidence 4699999999999 99999999998875543 66654432 23333 47899999999999999999999999999999
Q ss_pred EeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHH-----HHhCCcEEEEe
Q 028595 84 FSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELR-----KQIGASYYIEC 157 (207)
Q Consensus 84 ~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~~~~~~~~e~ 157 (207)
||+++++++..+...|...+.... +++|+++|+||+|+.+... .++..... ...++ +++++
T Consensus 240 ~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~------------~~~i~~~~~~~~~~~~~~-~~~~v 306 (329)
T 3o47_A 240 VDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMN------------AAEITDKLGLHSLRHRNW-YIQAT 306 (329)
T ss_dssp EETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC------------HHHHHHHHTCTTCCSSCE-EEEEC
T ss_pred EECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccC------------HHHHHHHhchhhhhcCCC-EEEEE
Confidence 999999999998444444444433 5899999999999976542 22222111 11233 79999
Q ss_pred ccCCCCCHHHHHHHHHHHHhCC
Q 028595 158 SSKTQQNVKAVFDAAIKVVIKP 179 (207)
Q Consensus 158 Sa~~~~~i~~~f~~i~~~~~~~ 179 (207)
||++|.||+++|++|++.+.++
T Consensus 307 SAk~g~gi~el~~~l~~~l~~~ 328 (329)
T 3o47_A 307 CATSGDGLYEGLDWLSNQLRNQ 328 (329)
T ss_dssp BTTTTBTHHHHHHHHHHHHTC-
T ss_pred ECCCCcCHHHHHHHHHHHHHhc
Confidence 9999999999999999988654
No 107
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.94 E-value=2.5e-27 Score=170.68 Aligned_cols=152 Identities=14% Similarity=0.094 Sum_probs=115.2
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccc------cccceec-
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNR------LRPLSYR- 75 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~------~~~~~~~- 75 (207)
..||+++|.+++| ||||+++|++..+...+.|+.+... ...+..++ ..+.+|||||++.+.. +...|+.
T Consensus 3 ~~~v~lvG~~gvG-KStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~ 79 (165)
T 2wji_A 3 SYEIALIGNPNVG-KSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIIN 79 (165)
T ss_dssp EEEEEEECSTTSS-HHHHHHHHHCCSSSCC-----CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHH
T ss_pred ccEEEEECCCCCC-HHHHHHHHhCCCeeccCCCCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHhc
Confidence 4799999999999 9999999998876555555544333 44555665 5789999999988753 3356665
Q ss_pred -CCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEE
Q 028595 76 -GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYY 154 (207)
Q Consensus 76 -~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 154 (207)
++|++++|+|+++.+.. ..|+..+.+ .+.|+++|+||+|+...+.+ . .+++.+++.+++ ++
T Consensus 80 ~~~~~~i~v~D~~~~~~~----~~~~~~~~~--~~~p~ilv~nK~Dl~~~~~~----------~-~~~~~~~~~~~~-~~ 141 (165)
T 2wji_A 80 EKPDLVVNIVDATALERN----LYLTLQLME--MGANLLLALNKMDLAKSLGI----------E-IDVDKLEKILGV-KV 141 (165)
T ss_dssp HCCSEEEEEEETTCHHHH----HHHHHHHHH--TTCCEEEEEECHHHHHHTTC----------C-CCHHHHHHHHTS-CE
T ss_pred CCCCEEEEEecCCchhHh----HHHHHHHHh--cCCCEEEEEEchHhccccCh----------h-hHHHHHHHHhCC-CE
Confidence 89999999999986543 345555544 37999999999998755432 2 246788888897 99
Q ss_pred EEeccCCCCCHHHHHHHHHHHH
Q 028595 155 IECSSKTQQNVKAVFDAAIKVV 176 (207)
Q Consensus 155 ~e~Sa~~~~~i~~~f~~i~~~~ 176 (207)
+++||++|.|++++|+++++.+
T Consensus 142 ~~~SA~~~~~v~~l~~~l~~~~ 163 (165)
T 2wji_A 142 VPLSAAKKMGIEELKKAISIAV 163 (165)
T ss_dssp EECBGGGTBSHHHHHHHHHHHT
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 9999999999999999998875
No 108
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.94 E-value=7.8e-27 Score=176.61 Aligned_cols=164 Identities=10% Similarity=-0.019 Sum_probs=117.1
Q ss_pred cceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCc------c----cccccc
Q 028595 3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQE------D----YNRLRP 71 (207)
Q Consensus 3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~------~----~~~~~~ 71 (207)
...||+++|.+++| ||||+++|+++.+.....+...... ...+..++ +.+.+|||||+. . +.. ..
T Consensus 28 ~~~kI~vvG~~~vG-KSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~~~~~~~-~~ 103 (228)
T 2qu8_A 28 HKKTIILSGAPNVG-KSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHKL--NKYQIIDTPGLLDRAFENRNTIEMTT-IT 103 (228)
T ss_dssp TSEEEEEECSTTSS-HHHHHHHHTTTCEEEECC-----CEEEEEEEETT--EEEEEEECTTTTTSCGGGCCHHHHHH-HH
T ss_pred CCCEEEEECCCCCC-HHHHHHHHhCCCCccCCCCCcceeeeeeeeecCC--CeEEEEECCCCcCcccchhhhHHHHH-HH
Confidence 36799999999999 9999999999876533222222112 22333343 678999999983 3 111 23
Q ss_pred ceecCCcEEEEEEeCCChhhHHHH-HHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCH---HHHHHHHH
Q 028595 72 LSYRGADVFVLAFSLVSRASYENV-LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTT---AQGEELRK 147 (207)
Q Consensus 72 ~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~---~~~~~~~~ 147 (207)
.++..+|++|+|||++++.++... ...|+..+....++.|+++|+||+|+.+.+.+ .. +.++.+++
T Consensus 104 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~~----------~~~~~~~~~~~~~ 173 (228)
T 2qu8_A 104 ALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMDSL----------SIDNKLLIKQILD 173 (228)
T ss_dssp HHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--CC----------CHHHHHHHHHHHH
T ss_pred HhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCchhh----------HHHHHHHHHHHHH
Confidence 446788999999999998876522 13566666665568999999999999766543 33 35677777
Q ss_pred HhC--CcEEEEeccCCCCCHHHHHHHHHHHHhCCCc
Q 028595 148 QIG--ASYYIECSSKTQQNVKAVFDAAIKVVIKPPQ 181 (207)
Q Consensus 148 ~~~--~~~~~e~Sa~~~~~i~~~f~~i~~~~~~~~~ 181 (207)
..+ . +++++||++|.|++++|+++++.+...+.
T Consensus 174 ~~~~~~-~~~~~SA~~g~gi~~l~~~l~~~i~~~~~ 208 (228)
T 2qu8_A 174 NVKNPI-KFSSFSTLTGVGVEQAKITACELLKNDQA 208 (228)
T ss_dssp HCCSCE-EEEECCTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred hcCCCc-eEEEEecccCCCHHHHHHHHHHHHHHHHH
Confidence 776 5 89999999999999999999999875543
No 109
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.93 E-value=5e-26 Score=190.44 Aligned_cols=159 Identities=14% Similarity=0.146 Sum_probs=122.5
Q ss_pred cceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEE
Q 028595 3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVL 82 (207)
Q Consensus 3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~ 82 (207)
..+||+++|.+++| ||||+++|+++.+. .+.||.+..+. .+.. ..+.+.+|||+|++.++.++..+++++|++|+
T Consensus 321 ~~~ki~lvG~~nvG-KSsLl~~l~~~~~~-~~~~T~~~~~~-~~~~--~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~ 395 (497)
T 3lvq_E 321 KEMRILMLGLDAAG-KTTILYKLKLGQSV-TTIPTVGFNVE-TVTY--KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIF 395 (497)
T ss_dssp CEEEEEEECSTTSS-HHHHHHHHHHSSCC-CCCCCSSEEEE-EEES--SSCEEEEEEECCCGGGSGGGGGGGTTCCEEEE
T ss_pred cceeEEEEcCCCCC-HHHHHHHHhcCCCC-CcCCccceeEE-EEEe--CCEEEEEEECCCcHHHHHHHHHHhccCCEEEE
Confidence 35799999999999 99999999988854 45677765543 2333 34789999999999999999999999999999
Q ss_pred EEeCCChhhHHHHHHHHHHHHhhc-C-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHH-----HhCCcEEE
Q 028595 83 AFSLVSRASYENVLKKWIPELQHY-S-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRK-----QIGASYYI 155 (207)
Q Consensus 83 v~d~~~~~s~~~~~~~~~~~i~~~-~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~-----~~~~~~~~ 155 (207)
|||+++++++..+ ..|+..+... . .++|++||+||+|+.+.. ...+...... ..++ +++
T Consensus 396 V~D~~~~~s~~~~-~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~------------~~~~~~~~~~~~~~~~~~~-~~~ 461 (497)
T 3lvq_E 396 VVDCADRDRIDEA-RQELHRIINDREMRDAIILIFANKQDLPDAM------------KPHEIQEKLGLTRIRDRNW-YVQ 461 (497)
T ss_dssp EEETTCGGGHHHH-HHHHHHHHTSGGGTTCEEEEEEECCSSSSCC------------CHHHHHHHTTCTTCCSSCE-EEE
T ss_pred EEECcchhHHHHH-HHHHHHHhhhhhcCCCcEEEEEECCCCCcCC------------CHHHHHHHhchhhhhcCCe-EEE
Confidence 9999999999999 5565555332 2 589999999999997543 2222222111 1122 699
Q ss_pred EeccCCCCCHHHHHHHHHHHHhCCC
Q 028595 156 ECSSKTQQNVKAVFDAAIKVVIKPP 180 (207)
Q Consensus 156 e~Sa~~~~~i~~~f~~i~~~~~~~~ 180 (207)
++||++|.|++++|++|.+.+....
T Consensus 462 ~~SA~~g~gi~~l~~~l~~~~~~~~ 486 (497)
T 3lvq_E 462 PSCATSGDGLYEGLTWLTSNYKSKL 486 (497)
T ss_dssp ECBTTTTBTHHHHHHHHHHHCC---
T ss_pred EEECCCCCCHHHHHHHHHHHHHhcC
Confidence 9999999999999999998876544
No 110
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.93 E-value=7.8e-27 Score=196.81 Aligned_cols=162 Identities=16% Similarity=0.160 Sum_probs=124.4
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEE---------EECCeEEEEEEEeCCCCcccccccccee
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANV---------VAEGTTVNLGLWDTAGQEDYNRLRPLSY 74 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~---------~~~~~~~~l~i~D~~G~~~~~~~~~~~~ 74 (207)
.+||+++|.++|| ||||+++++++.+...+.||++..+.... ..++..+.+.+|||||++.+..++..++
T Consensus 41 ~~kV~lvG~~~vG-KSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~~l 119 (535)
T 3dpu_A 41 EIKVHLIGDGMAG-KTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQFFM 119 (535)
T ss_dssp EEEEEEESSSCSS-HHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHHHH
T ss_pred ceEEEEECCCCCC-HHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHHHc
Confidence 5799999999999 99999999999988888899987764321 1233468899999999999999999999
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEE
Q 028595 75 RGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYY 154 (207)
Q Consensus 75 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 154 (207)
+++|++|+|||+++.+. + ..|+..+....++.|+++|+||+|+.+.+.+ ..+++++++...+. ++
T Consensus 120 ~~~d~ii~V~D~s~~~~---~-~~~~~~l~~~~~~~pvilV~NK~Dl~~~~~v----------~~~~~~~~~~~~~~-~~ 184 (535)
T 3dpu_A 120 TRSSVYMLLLDSRTDSN---K-HYWLRHIEKYGGKSPVIVVMNKIDENPSYNI----------EQKKINERFPAIEN-RF 184 (535)
T ss_dssp HSSEEEEEEECGGGGGG---H-HHHHHHHHHHSSSCCEEEEECCTTTCTTCCC----------CHHHHHHHCGGGTT-CE
T ss_pred cCCcEEEEEEeCCCchh---H-HHHHHHHHHhCCCCCEEEEEECCCccccccc----------CHHHHHHHHHhcCC-ce
Confidence 99999999999987643 3 5778888877778999999999999876653 77888999999987 89
Q ss_pred EEeccCCCCCHHHHHHHHHHHHhCCCc
Q 028595 155 IECSSKTQQNVKAVFDAAIKVVIKPPQ 181 (207)
Q Consensus 155 ~e~Sa~~~~~i~~~f~~i~~~~~~~~~ 181 (207)
+++||++|.|++++|+.+++.+.....
T Consensus 185 ~~vSA~~g~gi~eL~~~l~~~~~~~~~ 211 (535)
T 3dpu_A 185 HRISCKNGDGVESIAKSLKSAVLHPDS 211 (535)
T ss_dssp EECCC-----CTTHHHHHHHHHTCTTS
T ss_pred EEEecCcccCHHHHHHHHHHHHhcccc
Confidence 999999999999999999999877543
No 111
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.93 E-value=6.7e-27 Score=171.53 Aligned_cols=158 Identities=16% Similarity=0.185 Sum_probs=121.3
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCC-----------Cccccccccc
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAG-----------QEDYNRLRPL 72 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G-----------~~~~~~~~~~ 72 (207)
++||+++|.+++| ||||+++|+++.+...+.|+.+.. ...+..+ .+.+||||| ++.+..++..
T Consensus 1 ~~ki~v~G~~~~G-KSsli~~l~~~~~~~~~~~~~t~~-~~~~~~~----~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 74 (190)
T 2cxx_A 1 MATIIFAGRSNVG-KSTLIYRLTGKKVRRGKRPGVTRK-IIEIEWK----NHKIIDMPGFGFMMGLPKEVQERIKDEIVH 74 (190)
T ss_dssp -CEEEEEEBTTSS-HHHHHHHHHSCCCSSSSSTTCTTS-CEEEEET----TEEEEECCCBSCCTTSCHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCC-HHHHHHHHhCcCCccCCCCCccce-eEEEecC----CEEEEECCCccccccCCHHHHHHHHHHHHH
Confidence 3699999999999 999999999998877776665422 2233333 588999999 6677777788
Q ss_pred eecC-CcEEEEEEeCCChhhHHHHHHHHHHH---------HhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHH
Q 028595 73 SYRG-ADVFVLAFSLVSRASYENVLKKWIPE---------LQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQ 141 (207)
Q Consensus 73 ~~~~-~d~~i~v~d~~~~~s~~~~~~~~~~~---------i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~ 141 (207)
++++ ++++++||++.|..++..+...|... +.... .++|+++|+||+|+.+.. .++
T Consensus 75 ~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-------------~~~ 141 (190)
T 2cxx_A 75 FIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV-------------QEV 141 (190)
T ss_dssp HHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH-------------HHH
T ss_pred HHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH-------------HHH
Confidence 8887 88888888888888887765556542 11111 489999999999986542 456
Q ss_pred HHHHHHHhCCc------EEEEeccCCCCCHHHHHHHHHHHHhCCC
Q 028595 142 GEELRKQIGAS------YYIECSSKTQQNVKAVFDAAIKVVIKPP 180 (207)
Q Consensus 142 ~~~~~~~~~~~------~~~e~Sa~~~~~i~~~f~~i~~~~~~~~ 180 (207)
++.+++.++.. +++++||++|.|++++|+++++.+.+.+
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~ 186 (190)
T 2cxx_A 142 INFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRERQ 186 (190)
T ss_dssp HHHHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHhhhhhhccCCcEEEEecCCCCCHHHHHHHHHHhcchhh
Confidence 78888888872 3799999999999999999999887654
No 112
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.93 E-value=1.2e-25 Score=165.77 Aligned_cols=157 Identities=18% Similarity=0.168 Sum_probs=108.6
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeee-EEEECCeEEEEEEEeCCC----------Cccccccccc
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSA-NVVAEGTTVNLGLWDTAG----------QEDYNRLRPL 72 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~l~i~D~~G----------~~~~~~~~~~ 72 (207)
..+|+++|.+++| ||||+++|+++.+...+.++.+.+... ....++ .+.+||||| ++.+..++..
T Consensus 23 ~~~i~v~G~~~~G-KSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 98 (195)
T 1svi_A 23 LPEIALAGRSNVG-KSSFINSLINRKNLARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRMIET 98 (195)
T ss_dssp CCEEEEEEBTTSS-HHHHHHHHHTC-------------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCC-HHHHHHHHhCCCCccccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHHHHHH
Confidence 5799999999999 999999999998766667777655533 334444 589999999 6777777788
Q ss_pred eecCC---cEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHH-HHHH
Q 028595 73 SYRGA---DVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEE-LRKQ 148 (207)
Q Consensus 73 ~~~~~---d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~-~~~~ 148 (207)
+++.+ |++++|+|+++..++.+. .+...+.. .+.|+++|+||+|+.+.+.+ ....+++++ ++..
T Consensus 99 ~~~~~~~~~~~i~v~d~~~~~~~~~~--~~~~~~~~--~~~p~i~v~nK~Dl~~~~~~--------~~~~~~~~~~~~~~ 166 (195)
T 1svi_A 99 YITTREELKAVVQIVDLRHAPSNDDV--QMYEFLKY--YGIPVIVIATKADKIPKGKW--------DKHAKVVRQTLNID 166 (195)
T ss_dssp HHHHCTTEEEEEEEEETTSCCCHHHH--HHHHHHHH--TTCCEEEEEECGGGSCGGGH--------HHHHHHHHHHHTCC
T ss_pred HHhhhhcCCEEEEEEECCCCCCHHHH--HHHHHHHH--cCCCEEEEEECcccCChHHH--------HHHHHHHHHHHccc
Confidence 88777 999999999998777765 33344433 47999999999999766532 001123332 2222
Q ss_pred hCCcEEEEeccCCCCCHHHHHHHHHHHHh
Q 028595 149 IGASYYIECSSKTQQNVKAVFDAAIKVVI 177 (207)
Q Consensus 149 ~~~~~~~e~Sa~~~~~i~~~f~~i~~~~~ 177 (207)
.+. +++++||++|.|++++|+++.+.+.
T Consensus 167 ~~~-~~~~~Sa~~~~gv~~l~~~l~~~l~ 194 (195)
T 1svi_A 167 PED-ELILFSSETKKGKDEAWGAIKKMIN 194 (195)
T ss_dssp TTS-EEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred CCC-ceEEEEccCCCCHHHHHHHHHHHhc
Confidence 234 8999999999999999999998764
No 113
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.93 E-value=7.4e-26 Score=165.88 Aligned_cols=156 Identities=14% Similarity=0.082 Sum_probs=120.9
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCcccc------ccccceec-
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYN------RLRPLSYR- 75 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~------~~~~~~~~- 75 (207)
..||+++|.+++| ||||+++|++..+...+.|+.+... ...+..++ +.+.+|||||++.+. .++..++.
T Consensus 7 ~~~i~lvG~~gvG-KStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 83 (188)
T 2wjg_A 7 SYEIALIGNPNVG-KSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIIN 83 (188)
T ss_dssp EEEEEEECSTTSS-HHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCC-HHHHHHHHhCCCccccCCCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHHHHHHHHhc
Confidence 4799999999999 9999999998775555555554333 44566665 678999999998875 34556664
Q ss_pred -CCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEE
Q 028595 76 -GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYY 154 (207)
Q Consensus 76 -~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 154 (207)
.+|++++|+|.++.+ .. ..|+..+.. .+.|+++|+||+|+...+.+ . .+++.+++.+++ ++
T Consensus 84 ~~~~~~i~v~d~~~~~---~~-~~~~~~~~~--~~~piilv~nK~Dl~~~~~~----------~-~~~~~~~~~~~~-~~ 145 (188)
T 2wjg_A 84 EKPDLVVNIVDATALE---RN-LYLTLQLME--MGANLLLALNKMDLAKSLGI----------E-IDVDKLEKILGV-KV 145 (188)
T ss_dssp HCCSEEEEEEEGGGHH---HH-HHHHHHHHT--TTCCEEEEEECHHHHHHTTC----------C-CCHHHHHHHHTS-CE
T ss_pred cCCCEEEEEecchhHH---HH-HHHHHHHHh--cCCCEEEEEEhhhccccccc----------h-HHHHHHHHHhCC-Ce
Confidence 599999999988643 34 456666654 47999999999998765442 2 356788888897 99
Q ss_pred EEeccCCCCCHHHHHHHHHHHHhCCC
Q 028595 155 IECSSKTQQNVKAVFDAAIKVVIKPP 180 (207)
Q Consensus 155 ~e~Sa~~~~~i~~~f~~i~~~~~~~~ 180 (207)
+++||+++.|++++|+++++.+....
T Consensus 146 ~~~Sa~~~~~v~~l~~~i~~~~~~~~ 171 (188)
T 2wjg_A 146 VPLSAAKKMGIEELKKAISIAVKDKK 171 (188)
T ss_dssp EECBGGGTBSHHHHHHHHHHHHTTC-
T ss_pred EEEEecCCCCHHHHHHHHHHHHHhcc
Confidence 99999999999999999999887654
No 114
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.93 E-value=2.8e-26 Score=166.35 Aligned_cols=152 Identities=16% Similarity=0.143 Sum_probs=112.4
Q ss_pred ceeEEEEecccccceeeeeeeccCCCC--CccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccc--------cce
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSS--IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLR--------PLS 73 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~--------~~~ 73 (207)
..||+++|.+++| ||||+++|++... ...+.++..+.+...+.+++. .+.+|||||++.+.... ..+
T Consensus 4 ~~ki~ivG~~g~G-KStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 80 (172)
T 2gj8_A 4 GMKVVIAGRPNAG-KSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGM--PLHIIDTAGLREASDEVERIGIERAWQE 80 (172)
T ss_dssp CEEEEEEESTTSS-HHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTE--EEEEEECCCCSCCSSHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCC-HHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCe--EEEEEECCCcccchhHHHHHHHHHHHHH
Confidence 4699999999999 9999999998764 233434443444567777874 47899999987643211 135
Q ss_pred ecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCc
Q 028595 74 YRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGAS 152 (207)
Q Consensus 74 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 152 (207)
++++|++++|||++++.+++. ..|+..+.... .++|+++|+||+|+.+.... +++..+.
T Consensus 81 ~~~ad~~i~v~D~~~~~s~~~--~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~-----------------~~~~~~~- 140 (172)
T 2gj8_A 81 IEQADRVLFMVDGTTTDAVDP--AEIWPEFIARLPAKLPITVVRNKADITGETLG-----------------MSEVNGH- 140 (172)
T ss_dssp HHTCSEEEEEEETTTCCCCSH--HHHCHHHHHHSCTTCCEEEEEECHHHHCCCCE-----------------EEEETTE-
T ss_pred HHhCCEEEEEEECCCCCCHHH--HHHHHHHHHhcccCCCEEEEEECccCCcchhh-----------------hhhccCC-
Confidence 789999999999999988764 36766665544 47999999999998543211 1112344
Q ss_pred EEEEeccCCCCCHHHHHHHHHHHHhC
Q 028595 153 YYIECSSKTQQNVKAVFDAAIKVVIK 178 (207)
Q Consensus 153 ~~~e~Sa~~~~~i~~~f~~i~~~~~~ 178 (207)
+++++||++|.|++++|+++.+.+..
T Consensus 141 ~~~~~SA~~g~gv~~l~~~l~~~~~~ 166 (172)
T 2gj8_A 141 ALIRLSARTGEGVDVLRNHLKQSMGF 166 (172)
T ss_dssp EEEECCTTTCTTHHHHHHHHHHHC--
T ss_pred ceEEEeCCCCCCHHHHHHHHHHHhhh
Confidence 89999999999999999999987643
No 115
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.92 E-value=6.3e-26 Score=162.00 Aligned_cols=151 Identities=19% Similarity=0.113 Sum_probs=108.0
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCC--ccccCceeeeeeeEEEECCeEEEEEEEeCCCCccc-------ccccccee
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSI--WDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY-------NRLRPLSY 74 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~-------~~~~~~~~ 74 (207)
+.||+++|.+++| ||||++++.++.+. ..+.++..+.+...+..++. .+.+|||||++.+ ...+..++
T Consensus 1 ~~ki~v~G~~~~G-KSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 77 (161)
T 2dyk_A 1 MHKVVIVGRPNVG-KSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETDRG--RFLLVDTGGLWSGDKWEKKIQEKVDRAL 77 (161)
T ss_dssp CEEEEEECCTTSS-HHHHHHHHHHCCC-----------CCEEEEEEETTE--EEEEEECGGGCSSSSCCHHHHHHHHHHT
T ss_pred CCEEEEECCCCCC-HHHHHHHHhCCCeeeccCCCCceecceEEEEEeCCc--eEEEEECCCCCCccchHHHHHHHHHHHH
Confidence 3699999999999 99999999988743 23333333334556666664 6789999998873 33455678
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEE
Q 028595 75 RGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYY 154 (207)
Q Consensus 75 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 154 (207)
+.+|++++|+|+++..+.... .+...+.. .+.|+++|+||+|+.+... ++++++ .++..++
T Consensus 78 ~~~~~~i~v~d~~~~~~~~~~--~~~~~~~~--~~~p~ilv~nK~Dl~~~~~--------------~~~~~~-~~~~~~~ 138 (161)
T 2dyk_A 78 EDAEVVLFAVDGRAELTQADY--EVAEYLRR--KGKPVILVATKVDDPKHEL--------------YLGPLY-GLGFGDP 138 (161)
T ss_dssp TTCSEEEEEEESSSCCCHHHH--HHHHHHHH--HTCCEEEEEECCCSGGGGG--------------GCGGGG-GGSSCSC
T ss_pred HhCCEEEEEEECCCcccHhHH--HHHHHHHh--cCCCEEEEEECcccccchH--------------hHHHHH-hCCCCCe
Confidence 899999999999986444332 23333333 3799999999999975432 223444 5676579
Q ss_pred EEeccCCCCCHHHHHHHHHHHH
Q 028595 155 IECSSKTQQNVKAVFDAAIKVV 176 (207)
Q Consensus 155 ~e~Sa~~~~~i~~~f~~i~~~~ 176 (207)
+++||++|.|++++|+++++.+
T Consensus 139 ~~~Sa~~~~gv~~l~~~l~~~l 160 (161)
T 2dyk_A 139 IPTSSEHARGLEELLEAIWERL 160 (161)
T ss_dssp EECBTTTTBSHHHHHHHHHHHC
T ss_pred EEEecccCCChHHHHHHHHHhC
Confidence 9999999999999999998865
No 116
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.92 E-value=4.6e-25 Score=169.82 Aligned_cols=153 Identities=17% Similarity=0.128 Sum_probs=118.0
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccc------ccee--
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLR------PLSY-- 74 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~------~~~~-- 74 (207)
..||+++|.+++| ||||+|+|++..+.....|..+... ...+..++ +.+.+|||||+..+...+ ..|+
T Consensus 5 ~~kI~lvG~~nvG-KTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~~--~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~ 81 (258)
T 3a1s_A 5 MVKVALAGCPNVG-KTSLFNALTGTKQYVANWPGVTVEKKEGVFTYKG--YTINLIDLPGTYSLGYSSIDEKIARDYLLK 81 (258)
T ss_dssp EEEEEEECCTTSS-HHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETT--EEEEEEECCCCSSCCSSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCC-HHHHHHHHHCCCCcccCCCCceEEEEEEEEEECC--eEEEEEECCCcCccCCCCHHHHHHHHHHhh
Confidence 5799999999999 9999999998876544444433322 22444444 688999999998876543 5565
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEE
Q 028595 75 RGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYY 154 (207)
Q Consensus 75 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 154 (207)
.++|++++|+|+++.++... |...+... ++|+++|+||+|+.+.+.+ . .++..+++.+|+ ++
T Consensus 82 ~~~d~ii~V~D~t~~~~~~~----~~~~l~~~--~~pvilv~NK~Dl~~~~~i----------~-~~~~~l~~~lg~-~v 143 (258)
T 3a1s_A 82 GDADLVILVADSVNPEQSLY----LLLEILEM--EKKVILAMTAIDEAKKTGM----------K-IDRYELQKHLGI-PV 143 (258)
T ss_dssp SCCSEEEEEEETTSCHHHHH----HHHHHHTT--TCCEEEEEECHHHHHHTTC----------C-BCHHHHHHHHCS-CE
T ss_pred cCCCEEEEEeCCCchhhHHH----HHHHHHhc--CCCEEEEEECcCCCCccch----------H-HHHHHHHHHcCC-CE
Confidence 48999999999999776543 44444432 7999999999999765442 2 247888899998 99
Q ss_pred EEeccCCCCCHHHHHHHHHHHHh
Q 028595 155 IECSSKTQQNVKAVFDAAIKVVI 177 (207)
Q Consensus 155 ~e~Sa~~~~~i~~~f~~i~~~~~ 177 (207)
+++||++|.|++++|+++.+.+.
T Consensus 144 i~~SA~~g~gi~el~~~i~~~~~ 166 (258)
T 3a1s_A 144 VFTSSVTGEGLEELKEKIVEYAQ 166 (258)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEEEeeCCcCHHHHHHHHHHHhh
Confidence 99999999999999999999875
No 117
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.92 E-value=7e-25 Score=172.95 Aligned_cols=161 Identities=13% Similarity=0.062 Sum_probs=124.7
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCCcc--ccCceeeeeeeEEEECCeEEEEEEEeCCCCcccc----------cccc
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSIWD--YIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYN----------RLRP 71 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~----------~~~~ 71 (207)
...|+++|.+++| ||||+|+|++.++... ...|...........+ ....+.+|||||+.... ....
T Consensus 10 ~g~v~ivG~~nvG-KSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~~-~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~ 87 (308)
T 3iev_A 10 VGYVAIVGKPNVG-KSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNIP-NEAQIIFLDTPGIYEPKKSDVLGHSMVEIAK 87 (308)
T ss_dssp EEEEEEECSTTSS-HHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET-TTEEEEEEECCCCCCCCTTCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCc-HHHHHHHHhCCCccccCCCCCceeeEEEEEEecC-CCCeEEEEECcCCCccccchhHHHHHHHHHH
Confidence 4589999999999 9999999999886532 2222222222233333 14778999999986654 4556
Q ss_pred ceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhC-
Q 028595 72 LSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG- 150 (207)
Q Consensus 72 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~- 150 (207)
.++.++|++++|+|+++..+..+. ..|+..+... +.|+++|+||+|+...... ..+....+.+.++
T Consensus 88 ~~l~~aD~il~VvD~~~~~~~~~~-~~~~~~l~~~--~~pvilV~NK~Dl~~~~~~----------~~~~~~~l~~~~~~ 154 (308)
T 3iev_A 88 QSLEEADVILFMIDATEGWRPRDE-EIYQNFIKPL--NKPVIVVINKIDKIGPAKN----------VLPLIDEIHKKHPE 154 (308)
T ss_dssp HHHHHCSEEEEEEETTTBSCHHHH-HHHHHHTGGG--CCCEEEEEECGGGSSSGGG----------GHHHHHHHHHHCTT
T ss_pred HHhhcCCEEEEEEeCCCCCCchhH-HHHHHHHHhc--CCCEEEEEECccCCCCHHH----------HHHHHHHHHHhccC
Confidence 788899999999999999888887 6667777763 7999999999999743332 6677888888885
Q ss_pred CcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 028595 151 ASYYIECSSKTQQNVKAVFDAAIKVVIKP 179 (207)
Q Consensus 151 ~~~~~e~Sa~~~~~i~~~f~~i~~~~~~~ 179 (207)
..+++++||++|.|++++|+.+.+.+...
T Consensus 155 ~~~i~~vSA~~g~gv~~L~~~l~~~l~~~ 183 (308)
T 3iev_A 155 LTEIVPISALKGANLDELVKTILKYLPEG 183 (308)
T ss_dssp CCCEEECBTTTTBSHHHHHHHHHHHSCBC
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHhCccC
Confidence 44899999999999999999999998654
No 118
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.92 E-value=2.3e-25 Score=163.86 Aligned_cols=158 Identities=15% Similarity=0.103 Sum_probs=116.2
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEE-EECCeEEEEEEEeCCC----------Cccccccccc
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANV-VAEGTTVNLGLWDTAG----------QEDYNRLRPL 72 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~-~~~~~~~~l~i~D~~G----------~~~~~~~~~~ 72 (207)
..||+++|..++| ||||+++|+++. ...+.++.+.+..... ..+. .+.+||||| ++.+..++..
T Consensus 23 ~~~i~v~G~~~~G-KSsli~~l~~~~-~~~~~~~~~~t~~~~~~~~~~---~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~ 97 (195)
T 3pqc_A 23 KGEVAFVGRSNVG-KSSLLNALFNRK-IAFVSKTPGKTRSINFYLVNS---KYYFVDLPGYGYAKVSKKERMLWKRLVED 97 (195)
T ss_dssp TCEEEEEEBTTSS-HHHHHHHHHTSC-CSCCCSSCCCCCCEEEEEETT---TEEEEECCCBSSSCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCC-HHHHHHHHHcCc-cccccCCCCCccCeEEEEECC---cEEEEECCCCccccCChhhHHHHHHHHHH
Confidence 5799999999999 999999999887 3445566555443322 2232 467999999 6667777777
Q ss_pred eecCC---cEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHh
Q 028595 73 SYRGA---DVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI 149 (207)
Q Consensus 73 ~~~~~---d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 149 (207)
+++.+ |++++|+|.++..+.... .+...+... +.|+++|+||+|+.+.... ....+++++++...
T Consensus 98 ~~~~~~~~~~vi~v~d~~~~~~~~~~--~~~~~~~~~--~~p~i~v~nK~Dl~~~~~~--------~~~~~~~~~~~~~~ 165 (195)
T 3pqc_A 98 YFKNRWSLQMVFLLVDGRIPPQDSDL--MMVEWMKSL--NIPFTIVLTKMDKVKMSER--------AKKLEEHRKVFSKY 165 (195)
T ss_dssp HHHHCTTEEEEEEEEETTSCCCHHHH--HHHHHHHHT--TCCEEEEEECGGGSCGGGH--------HHHHHHHHHHHHSS
T ss_pred HHhcCcCceEEEEEecCCCCCCHHHH--HHHHHHHHc--CCCEEEEEEChhcCChHHH--------HHHHHHHHHHHhhc
Confidence 77766 999999999876444433 223333332 7999999999999754321 12456677777776
Q ss_pred CCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 028595 150 GASYYIECSSKTQQNVKAVFDAAIKVVIK 178 (207)
Q Consensus 150 ~~~~~~e~Sa~~~~~i~~~f~~i~~~~~~ 178 (207)
+..+++++||++|.|++++|+++.+.+.+
T Consensus 166 ~~~~~~~~Sa~~~~gv~~l~~~l~~~l~~ 194 (195)
T 3pqc_A 166 GEYTIIPTSSVTGEGISELLDLISTLLKE 194 (195)
T ss_dssp CCSCEEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred CCCceEEEecCCCCCHHHHHHHHHHHhhc
Confidence 65599999999999999999999988753
No 119
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.92 E-value=1.4e-25 Score=172.50 Aligned_cols=150 Identities=12% Similarity=0.103 Sum_probs=116.6
Q ss_pred eeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccc----------cccce
Q 028595 5 AKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNR----------LRPLS 73 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~----------~~~~~ 73 (207)
.+|+++|.+++| ||||+|+|++.+......|+++... ...+..++. .+.+|||||...+.. +...|
T Consensus 2 ~kI~lvG~~n~G-KSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~ 78 (256)
T 3iby_A 2 THALLIGNPNCG-KTTLFNALTNANQRVGNWPGVTVEKKTGEFLLGEH--LIEITDLPGVYSLVANAEGISQDEQIAAQS 78 (256)
T ss_dssp CEEEEEESTTSS-HHHHHHHHHTTSEEEEECTTSSSEEEEEEEEETTE--EEEEEECCCCSSCC------CHHHHHHHHH
T ss_pred CEEEEECCCCCC-HHHHHHHHHCCCCCccCCCCceEEEEEEEEEECCe--EEEEEeCCCcccccccccCCCHHHHHHHHH
Confidence 589999999999 9999999999876544455555433 446666774 789999999987764 45566
Q ss_pred e--cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCC
Q 028595 74 Y--RGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA 151 (207)
Q Consensus 74 ~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 151 (207)
+ .++|++|+|+|+++.++...+ ...+... +.|+++|+||+|+.+.+.. ......+++.+|+
T Consensus 79 ~~~~~~d~vi~VvDas~~~~~~~l----~~~l~~~--~~pvilv~NK~Dl~~~~~~-----------~~~~~~l~~~lg~ 141 (256)
T 3iby_A 79 VIDLEYDCIINVIDACHLERHLYL----TSQLFEL--GKPVVVALNMMDIAEHRGI-----------SIDTEKLESLLGC 141 (256)
T ss_dssp HHHSCCSEEEEEEEGGGHHHHHHH----HHHHTTS--CSCEEEEEECHHHHHHTTC-----------EECHHHHHHHHCS
T ss_pred HhhCCCCEEEEEeeCCCchhHHHH----HHHHHHc--CCCEEEEEEChhcCCcCCc-----------HHHHHHHHHHcCC
Confidence 6 789999999999997766655 2233332 7999999999998765431 1235568888898
Q ss_pred cEEEEeccCCCCCHHHHHHHHHHH
Q 028595 152 SYYIECSSKTQQNVKAVFDAAIKV 175 (207)
Q Consensus 152 ~~~~e~Sa~~~~~i~~~f~~i~~~ 175 (207)
+++++||++|.|++++|+++.+.
T Consensus 142 -~vi~~SA~~g~gi~el~~~i~~~ 164 (256)
T 3iby_A 142 -SVIPIQAHKNIGIPALQQSLLHC 164 (256)
T ss_dssp -CEEECBGGGTBSHHHHHHHHHTC
T ss_pred -CEEEEECCCCCCHHHHHHHHHhh
Confidence 99999999999999999999876
No 120
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.91 E-value=3.8e-25 Score=171.37 Aligned_cols=152 Identities=13% Similarity=0.128 Sum_probs=116.1
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCcccc------ccccceec-
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYN------RLRPLSYR- 75 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~------~~~~~~~~- 75 (207)
..||+++|.+++| ||||+|+|++........|. .++ .....++. .+.+.+|||||++.+. .+...|+.
T Consensus 3 ~~kI~lvG~~nvG-KSTL~n~L~g~~~~v~~~pg--~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~ 78 (272)
T 3b1v_A 3 MTEIALIGNPNSG-KTSLFNLITGHNQRVGNWPG--VTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLS 78 (272)
T ss_dssp CEEEEEECCTTSS-HHHHHHHHHCCCCCCCSSSC--CCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCC-HHHHHHHHHCCCCcccCCCC--CcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhc
Confidence 5799999999999 99999999987643332332 222 23344455 5678999999998876 34566665
Q ss_pred -CCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEE
Q 028595 76 -GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYY 154 (207)
Q Consensus 76 -~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 154 (207)
++|++++|+|+++.++.. .|...+.+ .++|+++|+||+|+.+.+.. . .++..+++.+++ ++
T Consensus 79 ~~~d~vi~V~D~t~~e~~~----~~~~~l~~--~~~p~ilv~NK~Dl~~~~~~----------~-~~~~~l~~~lg~-~v 140 (272)
T 3b1v_A 79 QRADSILNVVDATNLERNL----YLTTQLIE--TGIPVTIALNMIDVLDGQGK----------K-INVDKLSYHLGV-PV 140 (272)
T ss_dssp TCCSEEEEEEEGGGHHHHH----HHHHHHHH--TCSCEEEEEECHHHHHHTTC----------C-CCHHHHHHHHTS-CE
T ss_pred CCCCEEEEEecCCchHhHH----HHHHHHHh--cCCCEEEEEEChhhCCcCCc----------H-HHHHHHHHHcCC-CE
Confidence 599999999999976654 34444443 38999999999998765432 2 356788888998 89
Q ss_pred EEeccCCCCCHHHHHHHHHHHHh
Q 028595 155 IECSSKTQQNVKAVFDAAIKVVI 177 (207)
Q Consensus 155 ~e~Sa~~~~~i~~~f~~i~~~~~ 177 (207)
+++||++|.|++++|+++++.+.
T Consensus 141 i~~SA~~g~gi~el~~~i~~~~~ 163 (272)
T 3b1v_A 141 VATSALKQTGVDQVVKKAAHTTT 163 (272)
T ss_dssp EECBTTTTBSHHHHHHHHHHSCT
T ss_pred EEEEccCCCCHHHHHHHHHHHHh
Confidence 99999999999999999988654
No 121
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.90 E-value=3.9e-25 Score=171.74 Aligned_cols=156 Identities=13% Similarity=0.084 Sum_probs=116.5
Q ss_pred cceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCcccccc----------cc
Q 028595 3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRL----------RP 71 (207)
Q Consensus 3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~----------~~ 71 (207)
...+|+++|.+++| ||||+|+|++..+.....|+++... ...+..++ ..+.+|||||+..+... ..
T Consensus 2 ~~~~I~lvG~~n~G-KSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~e~i~~ 78 (274)
T 3i8s_A 2 KKLTIGLIGNPNSG-KTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTTD--HQVTLVDLPGTYSLTTISSQTSLDEQIAC 78 (274)
T ss_dssp CCEEEEEEECTTSS-HHHHHHHHHTTCEEEEECTTSSSEEEEEEEECSS--CEEEEEECCCCSCSCC----CCHHHHHHH
T ss_pred CccEEEEECCCCCC-HHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeCC--CceEEEECcCCCccccccccCCHHHHHHH
Confidence 35799999999999 9999999999876544445544333 44555555 45778999999887632 22
Q ss_pred cee--cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHh
Q 028595 72 LSY--RGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI 149 (207)
Q Consensus 72 ~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 149 (207)
.|+ .++|++++|+|.++.+....+ ..++... ++|+++|+||+|+.+.+.. ......+++.+
T Consensus 79 ~~~~~~~~d~ii~VvD~~~~~~~~~~-~~~l~~~-----~~p~ivv~NK~Dl~~~~~~-----------~~~~~~l~~~l 141 (274)
T 3i8s_A 79 HYILSGDADLLINVVDASNLERNLYL-TLQLLEL-----GIPCIVALNMLDIAEKQNI-----------RIEIDALSARL 141 (274)
T ss_dssp HHHHHTCCSEEEEEEEGGGHHHHHHH-HHHHHHH-----TCCEEEEEECHHHHHHTTE-----------EECHHHHHHHH
T ss_pred HHHhhcCCCEEEEEecCCChHHHHHH-HHHHHhc-----CCCEEEEEECccchhhhhH-----------HHHHHHHHHhc
Confidence 333 689999999999997766655 2332222 7999999999998765431 12356788888
Q ss_pred CCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 028595 150 GASYYIECSSKTQQNVKAVFDAAIKVVIKP 179 (207)
Q Consensus 150 ~~~~~~e~Sa~~~~~i~~~f~~i~~~~~~~ 179 (207)
|+ +++++||++|.|++++|+++.+.+...
T Consensus 142 g~-~~i~~SA~~g~gi~el~~~i~~~~~~~ 170 (274)
T 3i8s_A 142 GC-PVIPLVSTRGRGIEALKLAIDRYKANE 170 (274)
T ss_dssp TS-CEEECCCGGGHHHHHHHHHHHTCCCCC
T ss_pred CC-CEEEEEcCCCCCHHHHHHHHHHHHhcC
Confidence 98 999999999999999999998876543
No 122
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.90 E-value=4.9e-24 Score=160.32 Aligned_cols=165 Identities=9% Similarity=-0.042 Sum_probs=111.0
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeee-eEEEEC-CeEEEEEEEeCCCC----------cccccccc
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFS-ANVVAE-GTTVNLGLWDTAGQ----------EDYNRLRP 71 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~-~~~~~l~i~D~~G~----------~~~~~~~~ 71 (207)
..+|+++|..++| ||||+|+|+++.......++.+.+.. ....+. .....+.||||||. +.+..+..
T Consensus 29 ~~~i~v~G~~~~G-KSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~ 107 (223)
T 4dhe_A 29 QPEIAFAGRSNAG-KSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLLS 107 (223)
T ss_dssp SCEEEEEESCHHH-HHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHHH
T ss_pred CCEEEEEcCCCCC-HHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHHH
Confidence 5799999999999 99999999988732222233332222 223333 33467889999994 33445555
Q ss_pred ceecC---CcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHH
Q 028595 72 LSYRG---ADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ 148 (207)
Q Consensus 72 ~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 148 (207)
.|+.. +|++++|+|.++..+... ..|+..+.. .+.|+++|+||+|+.+.... ....+...+....
T Consensus 108 ~~~~~~~~~d~vi~v~d~~~~~~~~~--~~~~~~l~~--~~~p~i~v~nK~Dl~~~~~~--------~~~~~~~~~~l~~ 175 (223)
T 4dhe_A 108 SYLQTRPQLCGMILMMDARRPLTELD--RRMIEWFAP--TGKPIHSLLTKCDKLTRQES--------INALRATQKSLDA 175 (223)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHH--HHHHHHHGG--GCCCEEEEEECGGGSCHHHH--------HHHHHHHHHHHHH
T ss_pred HHHhcCcCcCEEEEEEeCCCCCCHHH--HHHHHHHHh--cCCCEEEEEeccccCChhhH--------HHHHHHHHHHHHh
Confidence 66665 788999999998655443 356666655 37999999999999765431 0012223333333
Q ss_pred h------CCcEEEEeccCCCCCHHHHHHHHHHHHhCCCc
Q 028595 149 I------GASYYIECSSKTQQNVKAVFDAAIKVVIKPPQ 181 (207)
Q Consensus 149 ~------~~~~~~e~Sa~~~~~i~~~f~~i~~~~~~~~~ 181 (207)
+ ...+++++||++|.|++++|++|.+.+..+..
T Consensus 176 ~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~~~ 214 (223)
T 4dhe_A 176 YRDAGYAGKLTVQLFSALKRTGLDDAHALIESWLRPAAA 214 (223)
T ss_dssp HHHHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC----
T ss_pred hhhcccCCCCeEEEeecCCCcCHHHHHHHHHHhcCccCC
Confidence 2 34489999999999999999999998876543
No 123
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.90 E-value=7.8e-24 Score=164.18 Aligned_cols=156 Identities=17% Similarity=0.066 Sum_probs=119.4
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccc------ccccee--
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNR------LRPLSY-- 74 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~------~~~~~~-- 74 (207)
.+||+++|.+++| ||||+|+|++..+.....|+.+... ...+..++. .+.+|||||+..+.. ....|+
T Consensus 3 ~~~i~lvG~~g~G-KTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~~~~~~~~~~~ 79 (271)
T 3k53_A 3 LKTVALVGNPNVG-KTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYREK--EFLVVDLPGIYSLTAHSIDELIARNFILD 79 (271)
T ss_dssp CEEEEEEECSSSS-HHHHHHHHHTTCEEEEECTTSSCEEEEEEEEETTE--EEEEEECCCCSCCCSSCHHHHHHHHHHHT
T ss_pred eeEEEEECCCCCC-HHHHHHHHhCCCcccCCCCCeEEEeeEEEEEECCc--eEEEEeCCCccccccCCHHHHHHHHhhhc
Confidence 4699999999999 9999999999877555556655444 345566664 489999999988766 455666
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEE
Q 028595 75 RGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYY 154 (207)
Q Consensus 75 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 154 (207)
.++|++++|+|.++.+... .|...+... ...|+++|+||+|+.+.+.. .. +...+++.+++ ++
T Consensus 80 ~~~d~vi~v~D~~~~~~~~----~~~~~~~~~-~~~p~ilv~NK~Dl~~~~~~----------~~-~~~~l~~~lg~-~~ 142 (271)
T 3k53_A 80 GNADVIVDIVDSTCLMRNL----FLTLELFEM-EVKNIILVLNKFDLLKKKGA----------KI-DIKKMRKELGV-PV 142 (271)
T ss_dssp TCCSEEEEEEEGGGHHHHH----HHHHHHHHT-TCCSEEEEEECHHHHHHHTC----------CC-CHHHHHHHHSS-CE
T ss_pred cCCcEEEEEecCCcchhhH----HHHHHHHhc-CCCCEEEEEEChhcCccccc----------HH-HHHHHHHHcCC-cE
Confidence 6899999999999865332 233333332 23999999999998765432 22 27778888998 99
Q ss_pred EEeccCCCCCHHHHHHHHHHHHhCC
Q 028595 155 IECSSKTQQNVKAVFDAAIKVVIKP 179 (207)
Q Consensus 155 ~e~Sa~~~~~i~~~f~~i~~~~~~~ 179 (207)
+++||++|.|++++|+.+.+.+...
T Consensus 143 ~~~Sa~~g~gi~~l~~~i~~~~~~~ 167 (271)
T 3k53_A 143 IPTNAKKGEGVEELKRMIALMAEGK 167 (271)
T ss_dssp EECBGGGTBTHHHHHHHHHHHHHTC
T ss_pred EEEEeCCCCCHHHHHHHHHHHHhcc
Confidence 9999999999999999999987644
No 124
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.90 E-value=4.4e-24 Score=167.70 Aligned_cols=156 Identities=14% Similarity=0.081 Sum_probs=112.2
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCCc-cccC-ceeeeeeeEEEECCeEEEEEEEeCCCCccc--------cccccce
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSIW-DYIP-TVFDNFSANVVAEGTTVNLGLWDTAGQEDY--------NRLRPLS 73 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~-~~~~-t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~--------~~~~~~~ 73 (207)
..+|+++|.+++| ||||+|+|++.++.. ...| |+.......+..+ ..++.+|||||.... ......+
T Consensus 7 ~g~V~ivG~~nvG-KSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~~--~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~ 83 (301)
T 1wf3_A 7 SGFVAIVGKPNVG-KSTLLNNLLGVKVAPISPRPQTTRKRLRGILTEG--RRQIVFVDTPGLHKPMDALGEFMDQEVYEA 83 (301)
T ss_dssp EEEEEEECSTTSS-HHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEET--TEEEEEEECCCCCCCCSHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCC-HHHHHHHHhCCceeeecCCCCceeEEEEEEEEeC--CcEEEEecCccccchhhHHHHHHHHHHHHH
Confidence 4679999999999 999999999988643 2222 3222222222223 478899999998763 3445677
Q ss_pred ecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHH-hCCc
Q 028595 74 YRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ-IGAS 152 (207)
Q Consensus 74 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~~~ 152 (207)
++++|++++|+|++++.+..+ ..++..+....++.|+++|+||+|+.+... . ..+.++. .+..
T Consensus 84 l~~ad~il~VvD~~~~~~~~~--~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~~-------------~-~~~~~~~~~~~~ 147 (301)
T 1wf3_A 84 LADVNAVVWVVDLRHPPTPED--ELVARALKPLVGKVPILLVGNKLDAAKYPE-------------E-AMKAYHELLPEA 147 (301)
T ss_dssp TSSCSEEEEEEETTSCCCHHH--HHHHHHHGGGTTTSCEEEEEECGGGCSSHH-------------H-HHHHHHHTSTTS
T ss_pred HhcCCEEEEEEECCCCCChHH--HHHHHHHHhhcCCCCEEEEEECcccCCchH-------------H-HHHHHHHhcCcC
Confidence 899999999999998755543 344566665546799999999999865432 0 2222333 3545
Q ss_pred EEEEeccCCCCCHHHHHHHHHHHHhC
Q 028595 153 YYIECSSKTQQNVKAVFDAAIKVVIK 178 (207)
Q Consensus 153 ~~~e~Sa~~~~~i~~~f~~i~~~~~~ 178 (207)
+++++||++|.|++++|+.+.+.+.+
T Consensus 148 ~~~~iSA~~g~gv~~l~~~l~~~l~~ 173 (301)
T 1wf3_A 148 EPRMLSALDERQVAELKADLLALMPE 173 (301)
T ss_dssp EEEECCTTCHHHHHHHHHHHHTTCCB
T ss_pred cEEEEeCCCCCCHHHHHHHHHHhccc
Confidence 79999999999999999999987654
No 125
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.89 E-value=4e-23 Score=171.11 Aligned_cols=155 Identities=12% Similarity=0.055 Sum_probs=99.7
Q ss_pred ceeEEEEecccccceeeeeeeccCCCC--CccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccc--------cce
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSS--IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLR--------PLS 73 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~--------~~~ 73 (207)
.+||+++|.+++| ||||+|+|++... ...+..|..+.....+.+++ +.+.+|||||++.+...+ ..+
T Consensus 233 ~~kV~ivG~~nvG-KSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~g--~~l~liDT~G~~~~~~~ve~~gi~~~~~~ 309 (476)
T 3gee_A 233 GVSTVIAGKPNAG-KSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRMK 309 (476)
T ss_dssp CEEEEEECCTTSS-HHHHHHHCC------------------CEEEEETT--EEEEEEC--------------------CC
T ss_pred CCEEEEECCCCCC-HHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECC--eEEEEEECCCCCcchhHHHHHHHHHHHhh
Confidence 4689999999999 9999999998853 33444444444566777777 568999999987765443 447
Q ss_pred ecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcE
Q 028595 74 YRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASY 153 (207)
Q Consensus 74 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 153 (207)
+.++|++++|+|++++.+++.+ ..+...+... .+.|+++|+||+|+.+.... ..+.+.+. +..+
T Consensus 310 ~~~aD~vl~VvD~s~~~s~~~~-~~~~~~l~~l-~~~piIvV~NK~Dl~~~~~~-------------~~~~l~~~-~~~~ 373 (476)
T 3gee_A 310 MAEADLILYLLDLGTERLDDEL-TEIRELKAAH-PAAKFLTVANKLDRAANADA-------------LIRAIADG-TGTE 373 (476)
T ss_dssp CSSCSEEEEEEETTTCSSGGGH-HHHHHHHHHC-TTSEEEEEEECTTSCTTTHH-------------HHHHHHHH-HTSC
T ss_pred cccCCEEEEEEECCCCcchhhh-HHHHHHHHhc-CCCCEEEEEECcCCCCccch-------------hHHHHHhc-CCCc
Confidence 8899999999999998887533 2333333322 27999999999999765431 12344444 2248
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHh
Q 028595 154 YIECSSKTQQNVKAVFDAAIKVVI 177 (207)
Q Consensus 154 ~~e~Sa~~~~~i~~~f~~i~~~~~ 177 (207)
++++||++|.|++++|+++.+.+.
T Consensus 374 ~i~vSAktg~GI~eL~~~i~~~~~ 397 (476)
T 3gee_A 374 VIGISALNGDGIDTLKQHMGDLVK 397 (476)
T ss_dssp EEECBTTTTBSHHHHHHHHTHHHH
T ss_pred eEEEEECCCCCHHHHHHHHHHHHh
Confidence 999999999999999999999987
No 126
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.89 E-value=1.1e-23 Score=174.33 Aligned_cols=158 Identities=18% Similarity=0.167 Sum_probs=118.8
Q ss_pred ceeEEEEecccccceeeeeeeccCCCC--CccccCceeeeeeeEEEECCeEEEEEEEeCCC----------Ccccccccc
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSS--IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAG----------QEDYNRLRP 71 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G----------~~~~~~~~~ 71 (207)
..||+++|.+++| ||||+|+|++... ...+..|..+.+...+..++. .+.|||||| ++.|..+..
T Consensus 195 ~~ki~ivG~~~vG-KSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~~ 271 (456)
T 4dcu_A 195 VIQFCLIGRPNVG-KSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLRA 271 (456)
T ss_dssp CEEEEEECSTTSS-HHHHHHHHHTSTTEEECC------CTTSEEEEETTE--EEEETTGGGTTTBTTBCCCCSHHHHHHH
T ss_pred cceeEEecCCCCC-HHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCc--eEEEEECCCCCcCcccchHHHHHHHHHH
Confidence 5799999999999 9999999997652 334444444444566777775 688999999 666666554
Q ss_pred -ceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHh-
Q 028595 72 -LSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI- 149 (207)
Q Consensus 72 -~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~- 149 (207)
.++..+|++++|+|+++..+... ..|...+.. .+.|+++|+||+|+.+.+.. ..+++.+.++..
T Consensus 272 ~~~~~~ad~~llviD~~~~~~~~~--~~~~~~~~~--~~~~~ilv~NK~Dl~~~~~~----------~~~~~~~~~~~~~ 337 (456)
T 4dcu_A 272 LKAIDRSEVVAVVLDGEEGIIEQD--KRIAGYAHE--AGKAVVIVVNKWDAVDKDES----------TMKEFEENIRDHF 337 (456)
T ss_dssp HHHHHHCSEEEEEEETTTCCCHHH--HHHHHHHHH--TTCEEEEEEECGGGSCCCSS----------HHHHHHHHHHHHC
T ss_pred HHHHhhCCEEEEEEeCCCCcCHHH--HHHHHHHHH--cCCCEEEEEEChhcCCCchH----------HHHHHHHHHHHhc
Confidence 37789999999999998655444 356666655 47999999999999876543 566666666654
Q ss_pred ---CCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 028595 150 ---GASYYIECSSKTQQNVKAVFDAAIKVVIK 178 (207)
Q Consensus 150 ---~~~~~~e~Sa~~~~~i~~~f~~i~~~~~~ 178 (207)
+..+++++||++|.|++++|+.+.+.+..
T Consensus 338 ~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~ 369 (456)
T 4dcu_A 338 QFLDYAPILFMSALTKKRIHTLMPAIIKASEN 369 (456)
T ss_dssp GGGTTSCEEECCTTTCTTGGGHHHHHHHHHHH
T ss_pred ccCCCCCEEEEcCCCCcCHHHHHHHHHHHHHH
Confidence 33499999999999999999999988753
No 127
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.89 E-value=1.7e-23 Score=170.83 Aligned_cols=156 Identities=15% Similarity=0.119 Sum_probs=115.7
Q ss_pred cceeEEEEecccccceeeeeeeccCCCCC--ccccCceeeeeeeEEEECCeEEEEEEEeCCCCcccccccc-------ce
Q 028595 3 LLAKLACLFATQVTSFLLYVLSVSGRSSI--WDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRP-------LS 73 (207)
Q Consensus 3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~-------~~ 73 (207)
...||+++|..++| ||||+++|++..+. ..+..+..+.....+...+. ..+.+|||||++.+..+.. .+
T Consensus 33 ~~~kI~IvG~~~vG-KSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~-~~l~liDTpG~~d~~~l~~~~~~~~~~~ 110 (423)
T 3qq5_A 33 FRRYIVVAGRRNVG-KSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPI-GPVTLVDTPGLDDVGELGRLRVEKARRV 110 (423)
T ss_dssp CCEEEEEECSCSTT-TTTTTTSSCC-------------CCCCEEEEEETTT-EEEEEEECSSTTCCCTTCCCCHHHHHHH
T ss_pred CCEEEEEECCCCCC-HHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCC-CeEEEEECcCCCcccchhHHHHHHHHHH
Confidence 36799999999999 99999999988763 23333333444556666553 2789999999998876643 37
Q ss_pred ecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcE
Q 028595 74 YRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASY 153 (207)
Q Consensus 74 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 153 (207)
+.++|++|+|+|++..+.. ..|+..+.+. ++|+++|+||+|+...+. .+.++.+++.++. +
T Consensus 111 l~~aD~vllVvD~~~~~~~----~~~l~~l~~~--~~piIvV~NK~Dl~~~~~------------~~~~~~l~~~~g~-~ 171 (423)
T 3qq5_A 111 FYRADCGILVTDSAPTPYE----DDVVNLFKEM--EIPFVVVVNKIDVLGEKA------------EELKGLYESRYEA-K 171 (423)
T ss_dssp HTSCSEEEEECSSSCCHHH----HHHHHHHHHT--TCCEEEECCCCTTTTCCC------------THHHHHSSCCTTC-C
T ss_pred HhcCCEEEEEEeCCChHHH----HHHHHHHHhc--CCCEEEEEeCcCCCCccH------------HHHHHHHHHHcCC-C
Confidence 8899999999999433322 4566666654 899999999999977653 2667777778887 9
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHhCC
Q 028595 154 YIECSSKTQQNVKAVFDAAIKVVIKP 179 (207)
Q Consensus 154 ~~e~Sa~~~~~i~~~f~~i~~~~~~~ 179 (207)
++++||++|.|++++|+++.+.+...
T Consensus 172 v~~vSAktg~gI~eL~~~L~~~l~~~ 197 (423)
T 3qq5_A 172 VLLVSALQKKGFDDIGKTISEILPGD 197 (423)
T ss_dssp CCCCSSCCTTSTTTHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHHHhhhhh
Confidence 99999999999999999999998544
No 128
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.88 E-value=1.2e-24 Score=163.20 Aligned_cols=146 Identities=7% Similarity=0.033 Sum_probs=105.3
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCCc---cccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecC----
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSIW---DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRG---- 76 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~---- 76 (207)
..+|+++|.+++| ||||+++|.++.+.. .+.|+.+..+ ..+.+.+|||||++.++..+..+++.
T Consensus 12 ~~~i~~~G~~g~G-KTsl~~~l~~~~~~~~~~~~~~~~~~~~--------~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 82 (218)
T 1nrj_B 12 QPSIIIAGPQNSG-KTSLLTLLTTDSVRPTVVSQEPLSAADY--------DGSGVTLVDFPGHVKLRYKLSDYLKTRAKF 82 (218)
T ss_dssp CCEEEEECSTTSS-HHHHHHHHHHSSCCCBCCCSSCEEETTG--------GGSSCEEEECCCCGGGTHHHHHHHHHHGGG
T ss_pred CCEEEEECCCCCC-HHHHHHHHhcCCCCCeeeecCceEEEEe--------eCceEEEEECCCcHHHHHHHHHHHHhcccc
Confidence 5799999999999 999999999887644 3555555443 34578999999999999988888887
Q ss_pred CcEEEEEEeCC-ChhhHHHHHHHHHHHHhh-----cCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhC
Q 028595 77 ADVFVLAFSLV-SRASYENVLKKWIPELQH-----YSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG 150 (207)
Q Consensus 77 ~d~~i~v~d~~-~~~s~~~~~~~~~~~i~~-----~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 150 (207)
+|++|+|||++ +++++..+ ..|+..+.. ..+++|+++|+||+|+.+...+. .......+++..++...+
T Consensus 83 ~~~~i~v~D~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~----~~~~~l~~~~~~~~~~~~ 157 (218)
T 1nrj_B 83 VKGLIFMVDSTVDPKKLTTT-AEFLVDILSITESSCENGIDILIACNKSELFTARPPS----KIKDALESEIQKVIERRK 157 (218)
T ss_dssp EEEEEEEEETTSCTTCCHHH-HHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCCHH----HHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEECCCChHHHHHH-HHHHHHHHhcccccccCCCCEEEEEEchHhcccCCHH----HHHHHHHHHHHHHHHHHh
Confidence 89999999999 88898888 556555533 23589999999999997765320 000011456777877777
Q ss_pred CcEEEEeccCCCCC
Q 028595 151 ASYYIECSSKTQQN 164 (207)
Q Consensus 151 ~~~~~e~Sa~~~~~ 164 (207)
. +++++||+++.+
T Consensus 158 ~-~~~~~Sa~~~~~ 170 (218)
T 1nrj_B 158 K-SLNEVERKINEE 170 (218)
T ss_dssp H-HHHC--------
T ss_pred c-cccccccccccc
Confidence 6 889999998764
No 129
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.88 E-value=7.4e-23 Score=168.69 Aligned_cols=178 Identities=18% Similarity=0.124 Sum_probs=115.0
Q ss_pred eeEEEEecccccceeeeeeeccCCCCC--ccccCceeeeeeeEEEECCeEEEEEEEeCCCCccc---------cccccce
Q 028595 5 AKLACLFATQVTSFLLYVLSVSGRSSI--WDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY---------NRLRPLS 73 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~---------~~~~~~~ 73 (207)
.+|+++|.++|| ||||+|+|++.+.. ..+..+..+.....+..++. .+.+|||||.+.. ...+..+
T Consensus 2 ~~v~ivG~pnvG-KStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~~ 78 (439)
T 1mky_A 2 ATVLIVGRPNVG-KSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGK--TFKLVDTCGVFDNPQDIISQKMKEVTLNM 78 (439)
T ss_dssp CEEEEECCTTSS-HHHHHHHHHC--------------CCSEEEEEETTE--EEEEEECTTTTSSGGGCCCHHHHHHHHHH
T ss_pred CEEEEECCCCCC-HHHHHHHHhCCCCceecCCCCCccceeeEEEEECCe--EEEEEECCCccccccchHHHHHHHHHHHH
Confidence 589999999999 99999999988742 33333333444556777775 4689999997752 3345678
Q ss_pred ecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHH-HHHHHHhCCc
Q 028595 74 YRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQG-EELRKQIGAS 152 (207)
Q Consensus 74 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~ 152 (207)
++++|++++|+|+++..+..+. .+...+.. .++|+++|+||+|+.+.. ..++ .++. .+++.
T Consensus 79 ~~~ad~il~V~D~~~~~~~~d~--~i~~~l~~--~~~p~ilv~NK~D~~~~~-------------~~~~~~~~~-~lg~~ 140 (439)
T 1mky_A 79 IREADLVLFVVDGKRGITKEDE--SLADFLRK--STVDTILVANKAENLREF-------------EREVKPELY-SLGFG 140 (439)
T ss_dssp HTTCSEEEEEEETTTCCCHHHH--HHHHHHHH--HTCCEEEEEESCCSHHHH-------------HHHTHHHHG-GGSSC
T ss_pred HHhCCEEEEEEECCCCCCHHHH--HHHHHHHH--cCCCEEEEEeCCCCcccc-------------HHHHHHHHH-hcCCC
Confidence 8999999999999886554432 22333333 279999999999984320 1222 3443 46665
Q ss_pred EEEEeccCCCCCHHHHHHHHHHHHhCCCcchhhhcccCCCeEEeeecCCccc
Q 028595 153 YYIECSSKTQQNVKAVFDAAIKVVIKPPQKQKEKKKKQRGCLLNVFCGRNLV 204 (207)
Q Consensus 153 ~~~e~Sa~~~~~i~~~f~~i~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~ 204 (207)
+++++||++|.|++++|+++++.+.+....... .............|++.+
T Consensus 141 ~~~~iSA~~g~gv~~L~~~i~~~l~~~~~~~~~-~~~~~~~~kvaivG~~gv 191 (439)
T 1mky_A 141 EPIPVSAEHNINLDTMLETIIKKLEEKGLDLES-KPEITDAIKVAIVGRPNV 191 (439)
T ss_dssp SCEECBTTTTBSHHHHHHHHHHHHHHTTCCSSS-CCCCCSCEEEEEECSTTS
T ss_pred CEEEEeccCCCCHHHHHHHHHHhcccccccchh-ccccccCceEEEECCCCC
Confidence 689999999999999999999988643211000 001123344566777654
No 130
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.88 E-value=1.5e-23 Score=172.72 Aligned_cols=158 Identities=18% Similarity=0.176 Sum_probs=114.1
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCC--ccccCceeeeeeeEEEECCeEEEEEEEeCCCC----------cccccccc
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSI--WDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQ----------EDYNRLRP 71 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~----------~~~~~~~~ 71 (207)
..||+++|.++|| ||||+|+|++.... ..+..|..+.+...+..++.. +.||||||+ +.|..+..
T Consensus 175 ~~ki~lvG~~nvG-KSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~~--~~l~DT~G~~~~~~~~~~~e~~~~~~~ 251 (436)
T 2hjg_A 175 VIQFCLIGRPNVG-KSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQE--FVIVDTAGMRKKGKVYETTEKYSVLRA 251 (436)
T ss_dssp CEEEEEECSTTSS-HHHHHHHHHTSTTEEEC---------CCEEEEETTEE--EEETTHHHHTCBTTBCCCCSHHHHHHH
T ss_pred CcEEEEEcCCCCC-HHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCeE--EEEEECCCcCcCccccchHHHHHHHHH
Confidence 4799999999999 99999999988753 344444444445567777754 789999997 33333332
Q ss_pred -ceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHH-HHHHHHh
Q 028595 72 -LSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQG-EELRKQI 149 (207)
Q Consensus 72 -~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~ 149 (207)
.+++.+|++++|+|+++..+.++. .|+..+.. .+.|+++|+||+|+.+.+.. ..++. +.+.+.+
T Consensus 252 ~~~~~~ad~~llv~D~~~~~s~~~~--~~~~~~~~--~~~~iiiv~NK~Dl~~~~~~----------~~~~~~~~~~~~l 317 (436)
T 2hjg_A 252 LKAIDRSEVVAVVLDGEEGIIEQDK--RIAGYAHE--AGKAVVIVVNKWDAVDKDES----------TMKEFEENIRDHF 317 (436)
T ss_dssp HHHHHHCSEEEEEEETTTCCCHHHH--HHHHHHHH--TTCEEEEEEECGGGSCCCTT----------HHHHHHHHHHHHC
T ss_pred HHHHHhCCEEEEEEcCCcCCcHHHH--HHHHHHHH--cCCcEEEEEECccCCCcchH----------HHHHHHHHHHHhc
Confidence 477889999999999999888886 57766654 48999999999999765432 33333 2233332
Q ss_pred ---CCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 028595 150 ---GASYYIECSSKTQQNVKAVFDAAIKVVIK 178 (207)
Q Consensus 150 ---~~~~~~e~Sa~~~~~i~~~f~~i~~~~~~ 178 (207)
+..+++++||++|.|++++|+.+.+.+..
T Consensus 318 ~~~~~~~~~~~SA~tg~~v~~l~~~i~~~~~~ 349 (436)
T 2hjg_A 318 QFLDYAPILFMSALTKKRIHTLMPAIIKASEN 349 (436)
T ss_dssp GGGTTSCEEECCTTTCTTGGGHHHHHHHHHHH
T ss_pred ccCCCCCEEEEecccCCCHHHHHHHHHHHHHH
Confidence 33489999999999999999999887763
No 131
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.87 E-value=1.5e-22 Score=167.74 Aligned_cols=150 Identities=15% Similarity=0.145 Sum_probs=115.0
Q ss_pred eeEEEEecccccceeeeeeeccCCCC--CccccCceeeeeeeEEEECCeEEEEEEEeCCCCc-ccccc--------ccce
Q 028595 5 AKLACLFATQVTSFLLYVLSVSGRSS--IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQE-DYNRL--------RPLS 73 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~-~~~~~--------~~~~ 73 (207)
++|+++|.+++| ||||+|+|++... ...+..|..+.....+.+++ ..+.+|||||.. .+... ...+
T Consensus 244 ~kV~ivG~pnvG-KSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~g--~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~ 320 (482)
T 1xzp_A 244 LRMVIVGKPNVG-KSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRG--ILFRIVDTAGVRSETNDLVERLGIERTLQE 320 (482)
T ss_dssp EEEEEECCHHHH-TCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEETT--EEEEEEESSCCCSSCCTTCCCCCHHHHHHH
T ss_pred CEEEEECcCCCc-HHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecCC--eEEEEEECCCccccchhhHHHHHHHHHHHH
Confidence 799999999999 9999999998753 44555555555566777777 457899999987 65432 2356
Q ss_pred ecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcE
Q 028595 74 YRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASY 153 (207)
Q Consensus 74 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 153 (207)
+..+|++|+|+|++++.++++. .+++.+ ++.|+++|+||+|+.+.. ..+++..++. .+. +
T Consensus 321 ~~~aD~vl~VvD~s~~~s~~~~--~il~~l----~~~piivV~NK~DL~~~~------------~~~~~~~~~~-~~~-~ 380 (482)
T 1xzp_A 321 IEKADIVLFVLDASSPLDEEDR--KILERI----KNKRYLVVINKVDVVEKI------------NEEEIKNKLG-TDR-H 380 (482)
T ss_dssp HHHCSEEEEEEETTSCCCHHHH--HHHHHH----TTSSEEEEEEECSSCCCC------------CHHHHHHHHT-CST-T
T ss_pred hhcccEEEEEecCCCCCCHHHH--HHHHHh----cCCCEEEEEECccccccc------------CHHHHHHHhc-CCC-c
Confidence 7899999999999998887764 334444 378999999999996431 4445555432 334 7
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHh
Q 028595 154 YIECSSKTQQNVKAVFDAAIKVVI 177 (207)
Q Consensus 154 ~~e~Sa~~~~~i~~~f~~i~~~~~ 177 (207)
++++||++|.|++++|+++.+.+.
T Consensus 381 ~i~iSAktg~Gi~eL~~~l~~~~~ 404 (482)
T 1xzp_A 381 MVKISALKGEGLEKLEESIYRETQ 404 (482)
T ss_dssp EEEEEGGGTCCHHHHHHHHHHHTH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 899999999999999999998765
No 132
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.87 E-value=7.7e-23 Score=162.93 Aligned_cols=161 Identities=18% Similarity=0.188 Sum_probs=120.2
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCC-ccccCceeeeeeeEEEECCeEEEEEEEeCCCC----ccccccccceec---
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSI-WDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQ----EDYNRLRPLSYR--- 75 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~----~~~~~~~~~~~~--- 75 (207)
..+|+++|.+++| ||||+++|++.+.. ..|..|........+.+++ ...+.+|||||. +.+..+...|++
T Consensus 158 la~V~lvG~~nvG-KSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~~-~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~ 235 (342)
T 1lnz_A 158 LADVGLVGFPSVG-KSTLLSVVSSAKPKIADYHFTTLVPNLGMVETDD-GRSFVMADLPGLIEGAHQGVGLGHQFLRHIE 235 (342)
T ss_dssp CCCEEEESSTTSS-HHHHHHHSEEECCEESSTTSSCCCCCEEEEECSS-SCEEEEEEHHHHHHHTTCTTTTHHHHHHHHH
T ss_pred cCeeeeeCCCCCC-HHHHHHHHHcCCCccccCCccccCceEEEEEeCC-CceEEEecCCCCcccccccchhHHHHHHHHH
Confidence 4579999999999 99999999987632 2333222222222344443 246889999994 345556666655
Q ss_pred CCcEEEEEEeCCC---hhhHHHHHHHHHHHHhhcC---CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHh
Q 028595 76 GADVFVLAFSLVS---RASYENVLKKWIPELQHYS---PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI 149 (207)
Q Consensus 76 ~~d~~i~v~d~~~---~~s~~~~~~~~~~~i~~~~---~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 149 (207)
.+|++|+|+|+++ +++++.+ ..|...+..+. .++|+++|+||+|+.+. .+..+++++.+
T Consensus 236 ~~d~ll~VvD~s~~~~~~~~~~~-~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~--------------~e~~~~l~~~l 300 (342)
T 1lnz_A 236 RTRVIVHVIDMSGLEGRDPYDDY-LTINQELSEYNLRLTERPQIIVANKMDMPEA--------------AENLEAFKEKL 300 (342)
T ss_dssp HCCEEEEEEESSCSSCCCHHHHH-HHHHHHHHHSCSSTTTSCBCBEEECTTSTTH--------------HHHHHHHHHHC
T ss_pred hccEEEEEEECCcccccChHHHH-HHHHHHHHHhhhhhcCCCEEEEEECccCCCC--------------HHHHHHHHHHh
Confidence 4999999999998 7888888 78888888765 47999999999998542 23456677777
Q ss_pred CC-cEEEEeccCCCCCHHHHHHHHHHHHhCCCc
Q 028595 150 GA-SYYIECSSKTQQNVKAVFDAAIKVVIKPPQ 181 (207)
Q Consensus 150 ~~-~~~~e~Sa~~~~~i~~~f~~i~~~~~~~~~ 181 (207)
+. .+++++||++++|++++|++|.+.+...+.
T Consensus 301 ~~~~~v~~iSA~tg~gi~eL~~~l~~~l~~~~~ 333 (342)
T 1lnz_A 301 TDDYPVFPISAVTREGLRELLFEVANQLENTPE 333 (342)
T ss_dssp CSCCCBCCCSSCCSSTTHHHHHHHHHHHTSCCC
T ss_pred hcCCCEEEEECCCCcCHHHHHHHHHHHHhhCcc
Confidence 62 278999999999999999999999876543
No 133
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.87 E-value=7.9e-22 Score=155.00 Aligned_cols=135 Identities=15% Similarity=0.056 Sum_probs=113.9
Q ss_pred eeeeeeccCCCCC-ccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEEEeCCChh-hHHHHH
Q 028595 19 LLYVLSVSGRSSI-WDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA-SYENVL 96 (207)
Q Consensus 19 ssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~ 96 (207)
.+|+.+++.+.|. ..|.||+|+.+...+..++ .+.+||+ +++++++++.|++++|++|+|||+++++ ++..+
T Consensus 31 ~sl~~~~~~~~f~~~~~~pTiGd~~~~~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l- 104 (301)
T 1u0l_A 31 GERILCKLRGKFRLQNLKIYVGDRVEYTPDETG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYII- 104 (301)
T ss_dssp CCEEEEEECGGGTTTTCCCCTTCEEEEECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHH-
T ss_pred CcEEEEEEcccccccCCCCCCccEEEEEEcCCC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHH-
Confidence 4799999999998 8999999987765443333 6899999 9999999999999999999999999998 67776
Q ss_pred HHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhC--CcEEEEeccCCCCCHHHHHHHHHH
Q 028595 97 KKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIG--ASYYIECSSKTQQNVKAVFDAAIK 174 (207)
Q Consensus 97 ~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~~~~~e~Sa~~~~~i~~~f~~i~~ 174 (207)
..|+..+.. .++|+++|+||+|+.+.+. .++++++++.++ + +++++||++|.|++++|..+..
T Consensus 105 ~~~l~~~~~--~~~piilv~NK~DL~~~~~------------v~~~~~~~~~~~~~~-~~~~~SAktg~gv~~lf~~l~g 169 (301)
T 1u0l_A 105 DKFLVLAEK--NELETVMVINKMDLYDEDD------------LRKVRELEEIYSGLY-PIVKTSAKTGMGIEELKEYLKG 169 (301)
T ss_dssp HHHHHHHHH--TTCEEEEEECCGGGCCHHH------------HHHHHHHHHHHTTTS-CEEECCTTTCTTHHHHHHHHSS
T ss_pred HHHHHHHHH--CCCCEEEEEeHHHcCCchh------------HHHHHHHHHHHhhhC-cEEEEECCCCcCHHHHHHHhcC
Confidence 889887765 4899999999999965432 255778888877 6 8999999999999999988754
No 134
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.86 E-value=2.1e-21 Score=156.09 Aligned_cols=158 Identities=13% Similarity=0.081 Sum_probs=115.5
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCCccccCcee-eeeeeEEEECCeEEEEEEEeCCCCccccc---------cccce
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVF-DNFSANVVAEGTTVNLGLWDTAGQEDYNR---------LRPLS 73 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~-~~~~~~~~~~~~~~~l~i~D~~G~~~~~~---------~~~~~ 73 (207)
..+|+++|.+++| ||||+++|++........+..+ ......+..++ ..+.+|||||...... ....+
T Consensus 167 ~~~v~lvG~~gvG-KSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~ 243 (357)
T 2e87_A 167 IPTVVIAGHPNVG-KSTLLKALTTAKPEIASYPFTTRGINVGQFEDGY--FRYQIIDTPGLLDRPISERNEIEKQAILAL 243 (357)
T ss_dssp SCEEEEECSTTSS-HHHHHHHHCSSCCEEECCTTCSSCEEEEEEEETT--EEEEEEECTTTSSSCSTTSCHHHHHHHHGG
T ss_pred CCEEEEECCCCCC-HHHHHHHHhCCCCccCCCCCeeeceeEEEEEecC--ceEEEEeCCCccccchhhhhHHHHHHHHHH
Confidence 4689999999999 9999999998874322222211 11122233333 5789999999865321 11123
Q ss_pred ecCCcEEEEEEeCCChh--hHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCC
Q 028595 74 YRGADVFVLAFSLVSRA--SYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA 151 (207)
Q Consensus 74 ~~~~d~~i~v~d~~~~~--s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 151 (207)
...+|++++|+|+++.. ++... ..|+..+....++.|+++|+||+|+.+.. ..+++..+++..+.
T Consensus 244 ~~~ad~illV~D~s~~~~~~~~~~-~~~~~~i~~~~~~~piilV~NK~Dl~~~~------------~~~~~~~~~~~~~~ 310 (357)
T 2e87_A 244 RYLGNLIIYIFDPSEHCGFPLEEQ-IHLFEEVHGEFKDLPFLVVINKIDVADEE------------NIKRLEKFVKEKGL 310 (357)
T ss_dssp GGTCSEEEEEECTTCTTSSCHHHH-HHHHHHHHHHTTTSCEEEEECCTTTCCHH------------HHHHHHHHHHHTTC
T ss_pred HhcCCEEEEEEeCCccccCCHHHH-HHHHHHHHHhcCCCCEEEEEECcccCChH------------HHHHHHHHHHhcCC
Confidence 45699999999999877 66766 67777776655589999999999996543 23556677777777
Q ss_pred cEEEEeccCCCCCHHHHHHHHHHHHhC
Q 028595 152 SYYIECSSKTQQNVKAVFDAAIKVVIK 178 (207)
Q Consensus 152 ~~~~e~Sa~~~~~i~~~f~~i~~~~~~ 178 (207)
+++++||++|+|++++|+++.+.+..
T Consensus 311 -~~~~iSA~~g~gi~~l~~~i~~~l~~ 336 (357)
T 2e87_A 311 -NPIKISALKGTGIDLVKEEIIKTLRP 336 (357)
T ss_dssp -CCEECBTTTTBTHHHHHHHHHHHHHH
T ss_pred -CeEEEeCCCCcCHHHHHHHHHHHHHH
Confidence 89999999999999999999998854
No 135
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.86 E-value=1.1e-21 Score=166.26 Aligned_cols=164 Identities=16% Similarity=0.179 Sum_probs=117.9
Q ss_pred CccceeEEEEecccccceeeeeeeccCCC--CCc-----cccC------ceeeee-eeEEEE-----CCeEEEEEEEeCC
Q 028595 1 MELLAKLACLFATQVTSFLLYVLSVSGRS--SIW-----DYIP------TVFDNF-SANVVA-----EGTTVNLGLWDTA 61 (207)
Q Consensus 1 m~~~~ki~iiG~~~~GgKssli~~l~~~~--~~~-----~~~~------t~~~~~-~~~~~~-----~~~~~~l~i~D~~ 61 (207)
|+...+|+++|..++| ||||+++|+... +.. .+.. +.|.+. ...+.+ ++..+.++|||||
T Consensus 1 ~~~irnI~IiGh~d~G-KTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTP 79 (599)
T 3cb4_D 1 MKNIRNFSIIAHIDHG-KSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTP 79 (599)
T ss_dssp CTTEEEEEEECCC-----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECC
T ss_pred CCCCeEEEEECCCCCC-HHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECC
Confidence 6778899999999999 999999997521 111 1111 112222 111222 5667999999999
Q ss_pred CCccccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHH
Q 028595 62 GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQ 141 (207)
Q Consensus 62 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~ 141 (207)
|+++|...+..+++.+|++|+|+|+++..+.+.. ..|...+.. ++|+++++||+|+...+ ..+.
T Consensus 80 Gh~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~-~~~~~~~~~---~ipiIvViNKiDl~~a~------------~~~v 143 (599)
T 3cb4_D 80 GHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTL-ANCYTAMEM---DLEVVPVLNKIDLPAAD------------PERV 143 (599)
T ss_dssp CCGGGHHHHHHHHHHCSEEEEEEETTTCCCTHHH-HHHHHHHHT---TCEEEEEEECTTSTTCC------------HHHH
T ss_pred CchHHHHHHHHHHHHCCEEEEEEECCCCCCHHHH-HHHHHHHHC---CCCEEEeeeccCccccc------------HHHH
Confidence 9999999899999999999999999998777776 566555443 78999999999997643 2344
Q ss_pred HHHHHHHhCCc--EEEEeccCCCCCHHHHHHHHHHHHhCCCc
Q 028595 142 GEELRKQIGAS--YYIECSSKTQQNVKAVFDAAIKVVIKPPQ 181 (207)
Q Consensus 142 ~~~~~~~~~~~--~~~e~Sa~~~~~i~~~f~~i~~~~~~~~~ 181 (207)
.+++.+.++.. +++++||++|.|++++|+++++.+..+..
T Consensus 144 ~~ei~~~lg~~~~~vi~vSAktg~GI~~Ll~~I~~~lp~p~~ 185 (599)
T 3cb4_D 144 AEEIEDIVGIDATDAVRCSAKTGVGVQDVLERLVRDIPPPEG 185 (599)
T ss_dssp HHHHHHHTCCCCTTCEEECTTTCTTHHHHHHHHHHHSCCCCC
T ss_pred HHHHHHHhCCCcceEEEeecccCCCchhHHHHHhhcCCCccc
Confidence 56677777752 48999999999999999999999876653
No 136
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.85 E-value=1.7e-22 Score=166.36 Aligned_cols=154 Identities=17% Similarity=0.067 Sum_probs=101.5
Q ss_pred eeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCc--------cccccccceec
Q 028595 5 AKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQE--------DYNRLRPLSYR 75 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~--------~~~~~~~~~~~ 75 (207)
.+|+++|.++|| ||||+|+|++.++. .+.++.|.+. ............+.+|||||++ .+...+..++.
T Consensus 4 ~~V~ivG~~nvG-KStL~n~l~~~~~~-~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~ 81 (436)
T 2hjg_A 4 PVVAIVGRPNVG-KSTIFNRIAGERIS-IVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMD 81 (436)
T ss_dssp CEEEEECSTTSS-HHHHHHHHEEEECC------------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCC-HHHHHHHHhCCCce-eecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHH
Confidence 689999999999 99999999987653 2233333332 1122222223568999999986 45566778899
Q ss_pred CCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEE
Q 028595 76 GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYI 155 (207)
Q Consensus 76 ~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 155 (207)
.+|++|+|+|.++..+..+. .+...+.. .++|+++|+||+|+.+.... +.++. .+++.+++
T Consensus 82 ~ad~il~vvD~~~~~~~~d~--~~~~~l~~--~~~pvilv~NK~D~~~~~~~--------------~~~~~-~lg~~~~~ 142 (436)
T 2hjg_A 82 EADVIIFMVNGREGVTAADE--EVAKILYR--TKKPVVLAVNKLDNTEMRAN--------------IYDFY-SLGFGEPY 142 (436)
T ss_dssp HCSEEEEEEETTTCSCHHHH--HHHHHHTT--CCSCEEEEEECCCC-----C--------------CCSSG-GGSSCCCE
T ss_pred hCCEEEEEEeCCCCCCHHHH--HHHHHHHH--cCCCEEEEEECccCccchhh--------------HHHHH-HcCCCCeE
Confidence 99999999999987776553 44555543 47999999999998654321 11122 34555789
Q ss_pred EeccCCCCCHHHHHHHHHHHHhCC
Q 028595 156 ECSSKTQQNVKAVFDAAIKVVIKP 179 (207)
Q Consensus 156 e~Sa~~~~~i~~~f~~i~~~~~~~ 179 (207)
++||++|.|+.++++++.+.+.+.
T Consensus 143 ~iSA~~g~gv~~L~~~i~~~l~~~ 166 (436)
T 2hjg_A 143 PISGTHGLGLGDLLDAVAEHFKNI 166 (436)
T ss_dssp ECBTTTTBTHHHHHHHHHHTGGGC
T ss_pred EEeCcCCCChHHHHHHHHHhcCcc
Confidence 999999999999999999988643
No 137
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.85 E-value=2.2e-21 Score=152.43 Aligned_cols=157 Identities=15% Similarity=0.065 Sum_probs=112.1
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCCc-cccC-ceeeeeeeEEEECCeEEEEEEEeCCCCc---------cccccccc
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSIW-DYIP-TVFDNFSANVVAEGTTVNLGLWDTAGQE---------DYNRLRPL 72 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~-~~~~-t~~~~~~~~~~~~~~~~~l~i~D~~G~~---------~~~~~~~~ 72 (207)
..+|+++|.+++| ||||+|++++.++.. ...+ |........+..+ ...+.+|||||.. .+......
T Consensus 8 ~~~VaIvG~~nvG-KSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~--~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~ 84 (301)
T 1ega_A 8 CGFIAIVGRPNVG-KSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEG--AYQAIYVDTPGLHMEEKRAINRLMNKAASS 84 (301)
T ss_dssp EEEEEEECSSSSS-HHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEET--TEEEEEESSSSCCHHHHHHHHHHHTCCTTS
T ss_pred CCEEEEECCCCCC-HHHHHHHHHCCCccccCCCCCcceeeEEEEEEEC--CeeEEEEECcCCCccchhhHHHHHHHHHHH
Confidence 3579999999999 999999999987532 1122 2221112223333 3678899999987 34556678
Q ss_pred eecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCc
Q 028595 73 SYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGAS 152 (207)
Q Consensus 73 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 152 (207)
+++.+|++++|+|.++ -+... ..+...+.. .+.|+++++||+|+...+.. ..+.+..+++.++..
T Consensus 85 ~l~~~D~vl~Vvd~~~-~~~~~--~~i~~~l~~--~~~P~ilvlNK~D~~~~~~~----------~~~~l~~l~~~~~~~ 149 (301)
T 1ega_A 85 SIGDVELVIFVVEGTR-WTPDD--EMVLNKLRE--GKAPVILAVNKVDNVQEKAD----------LLPHLQFLASQMNFL 149 (301)
T ss_dssp CCCCEEEEEEEEETTC-CCHHH--HHHHHHHHS--SSSCEEEEEESTTTCCCHHH----------HHHHHHHHHTTSCCS
T ss_pred HHhcCCEEEEEEeCCC-CCHHH--HHHHHHHHh--cCCCEEEEEECcccCccHHH----------HHHHHHHHHHhcCcC
Confidence 8999999999999987 22222 223334432 37999999999999763221 445667777777766
Q ss_pred EEEEeccCCCCCHHHHHHHHHHHHhC
Q 028595 153 YYIECSSKTQQNVKAVFDAAIKVVIK 178 (207)
Q Consensus 153 ~~~e~Sa~~~~~i~~~f~~i~~~~~~ 178 (207)
.++++||+++.|++++++.+.+.+..
T Consensus 150 ~~i~iSA~~g~~v~~l~~~i~~~l~~ 175 (301)
T 1ega_A 150 DIVPISAETGLNVDTIAAIVRKHLPE 175 (301)
T ss_dssp EEEECCTTTTTTHHHHHHHHHTTCCB
T ss_pred ceEEEECCCCCCHHHHHHHHHHhCCc
Confidence 79999999999999999999987654
No 138
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.84 E-value=3e-21 Score=163.35 Aligned_cols=164 Identities=13% Similarity=0.138 Sum_probs=118.8
Q ss_pred CccceeEEEEecccccceeeeeeeccCC--CCCc-----cccCc------eeeee---eeEEEE---CCeEEEEEEEeCC
Q 028595 1 MELLAKLACLFATQVTSFLLYVLSVSGR--SSIW-----DYIPT------VFDNF---SANVVA---EGTTVNLGLWDTA 61 (207)
Q Consensus 1 m~~~~ki~iiG~~~~GgKssli~~l~~~--~~~~-----~~~~t------~~~~~---~~~~~~---~~~~~~l~i~D~~ 61 (207)
|+...+|+++|..++| ||||+++|+.. .+.. .+..+ .|.+. ...+.. ++..+.++|||||
T Consensus 3 ~~~irnI~IiGh~d~G-KTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTP 81 (600)
T 2ywe_A 3 QKNVRNFCIIAHVDHG-KSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTP 81 (600)
T ss_dssp GGGEEEEEEECC--CC-HHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCC
T ss_pred ccCceEEEEECCCCCC-HHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECC
Confidence 3557899999999999 99999999752 1110 01111 11111 111211 5667999999999
Q ss_pred CCccccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHH
Q 028595 62 GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQ 141 (207)
Q Consensus 62 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~ 141 (207)
|+++|...+..+++.+|++|+|+|+++..+.+.. ..|..... .++|+++++||+|+...+ ..+.
T Consensus 82 Gh~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~-~~~~~a~~---~~ipiIvviNKiDl~~a~------------~~~v 145 (600)
T 2ywe_A 82 GHVDFSYEVSRALAACEGALLLIDASQGIEAQTV-ANFWKAVE---QDLVIIPVINKIDLPSAD------------VDRV 145 (600)
T ss_dssp CSGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHH-HHHHHHHH---TTCEEEEEEECTTSTTCC------------HHHH
T ss_pred CcHhHHHHHHHHHHhCCEEEEEEECCCCccHHHH-HHHHHHHH---CCCCEEEEEeccCccccC------------HHHH
Confidence 9999988888899999999999999998888776 56655543 379999999999997543 2344
Q ss_pred HHHHHHHhCCc--EEEEeccCCCCCHHHHHHHHHHHHhCCCc
Q 028595 142 GEELRKQIGAS--YYIECSSKTQQNVKAVFDAAIKVVIKPPQ 181 (207)
Q Consensus 142 ~~~~~~~~~~~--~~~e~Sa~~~~~i~~~f~~i~~~~~~~~~ 181 (207)
.+++.+.++.. +++++||++|.|++++|+++++.+..+..
T Consensus 146 ~~el~~~lg~~~~~vi~vSAktg~GI~~Lle~I~~~lp~p~~ 187 (600)
T 2ywe_A 146 KKQIEEVLGLDPEEAILASAKEGIGIEEILEAIVNRIPPPKG 187 (600)
T ss_dssp HHHHHHTSCCCGGGCEECBTTTTBSHHHHHHHHHHHSCCCCC
T ss_pred HHHHHHhhCCCcccEEEEEeecCCCchHHHHHHHHhcccccc
Confidence 56666666752 48999999999999999999999876653
No 139
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.84 E-value=1.9e-21 Score=160.52 Aligned_cols=153 Identities=18% Similarity=0.165 Sum_probs=105.7
Q ss_pred ceeEEEEecccccceeeeeeeccCCCC--CccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccc--------cce
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSS--IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLR--------PLS 73 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~--------~~~ 73 (207)
.+||+++|.+++| ||||+|+|++... ...+..|..+.....+.++| ..+.+|||||...+...+ ..+
T Consensus 224 ~~kV~ivG~~nvG-KSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~g--~~v~liDT~G~~~~~~~ve~~gi~~~~~~ 300 (462)
T 3geh_A 224 GLKVAIVGRPNVG-KSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVGG--IPVQVLDTAGIRETSDQVEKIGVERSRQA 300 (462)
T ss_dssp CEEEEEEECTTSS-HHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEETT--EEEEECC--------------------CC
T ss_pred CCEEEEEcCCCCC-HHHHHHHHhCCCcccccCCCCeeEEEEEEEEEECC--EEEEEEECCccccchhHHHHHHHHHHhhh
Confidence 4689999999999 9999999998653 33333343344455777787 457899999976654332 346
Q ss_pred ecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcE
Q 028595 74 YRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASY 153 (207)
Q Consensus 74 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 153 (207)
+..+|++++|+|.+++.+... ..|+..+. ..|+++|+||+|+.+.... . ..+.+. .+ .+
T Consensus 301 ~~~aD~vl~VvD~s~~~~~~~--~~i~~~l~----~~piivV~NK~Dl~~~~~~----------~--~~~~~~--~~-~~ 359 (462)
T 3geh_A 301 ANTADLVLLTIDAATGWTTGD--QEIYEQVK----HRPLILVMNKIDLVEKQLI----------T--SLEYPE--NI-TQ 359 (462)
T ss_dssp CCSCSEEEEEEETTTCSCHHH--HHHHHHHT----TSCEEEEEECTTSSCGGGS----------T--TCCCCT--TC-CC
T ss_pred hhcCCEEEEEeccCCCCCHHH--HHHHHhcc----CCcEEEEEECCCCCcchhh----------H--HHHHhc--cC-Cc
Confidence 788999999999999877765 35666653 4799999999999766542 1 111111 23 38
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHhCCC
Q 028595 154 YIECSSKTQQNVKAVFDAAIKVVIKPP 180 (207)
Q Consensus 154 ~~e~Sa~~~~~i~~~f~~i~~~~~~~~ 180 (207)
++++||++|.|++++|+++.+.+....
T Consensus 360 ~i~iSAktg~Gi~eL~~~i~~~~~~~~ 386 (462)
T 3geh_A 360 IVHTAAAQKQGIDSLETAILEIVQTGK 386 (462)
T ss_dssp EEEEBTTTTBSHHHHHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhccC
Confidence 999999999999999999999886543
No 140
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.84 E-value=1.7e-20 Score=152.97 Aligned_cols=166 Identities=11% Similarity=0.005 Sum_probs=113.6
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCCcc---ccCceeeee----eeEEE---------E---CCeEEEEEEEeCCCCc
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSIWD---YIPTVFDNF----SANVV---------A---EGTTVNLGLWDTAGQE 64 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~---~~~t~~~~~----~~~~~---------~---~~~~~~l~i~D~~G~~ 64 (207)
.++|+++|..++| ||||+++|++...... ...+.+... ...+. . ......+.+|||||++
T Consensus 8 ~~~I~vvG~~~~G-KSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtPGh~ 86 (403)
T 3sjy_A 8 EVNIGVVGHVDHG-KTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGHE 86 (403)
T ss_dssp CCEEEEECSTTSS-HHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECCCCG
T ss_pred CcEEEEECCCCCC-HHHHHHHHhCcccccccCccccceeeccccccccceecccccccccccccccccceEEEEECCCcH
Confidence 5799999999999 9999999987543211 011110000 00000 0 1223789999999999
Q ss_pred cccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHH
Q 028595 65 DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEE 144 (207)
Q Consensus 65 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~ 144 (207)
.|......++..+|++++|+|+++..+.... ..|+..+... ...|+++++||+|+.+.... ....++..+
T Consensus 87 ~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt-~~~~~~~~~~-~~~~iivviNK~Dl~~~~~~--------~~~~~~i~~ 156 (403)
T 3sjy_A 87 VLMATMLSGAALMDGAILVVAANEPFPQPQT-REHFVALGII-GVKNLIIVQNKVDVVSKEEA--------LSQYRQIKQ 156 (403)
T ss_dssp GGHHHHHHHHTTCSEEEEEEETTSCSSCHHH-HHHHHHHHHH-TCCCEEEEEECGGGSCHHHH--------HHHHHHHHH
T ss_pred HHHHHHHHHHhhCCEEEEEEECCCCCCcHHH-HHHHHHHHHc-CCCCEEEEEECccccchHHH--------HHHHHHHHH
Confidence 9998888899999999999999987655555 4555555443 23589999999999765421 002223333
Q ss_pred HHHHhC--CcEEEEeccCCCCCHHHHHHHHHHHHhCCC
Q 028595 145 LRKQIG--ASYYIECSSKTQQNVKAVFDAAIKVVIKPP 180 (207)
Q Consensus 145 ~~~~~~--~~~~~e~Sa~~~~~i~~~f~~i~~~~~~~~ 180 (207)
+...++ ..+++++||++|.|++++|+.|.+.+..+.
T Consensus 157 ~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~~~~ 194 (403)
T 3sjy_A 157 FTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIKTPY 194 (403)
T ss_dssp HHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCCCC
T ss_pred HHHhhCCCCCEEEEEECCCCcChHHHHHHHHHhCCCCC
Confidence 333322 238999999999999999999998876554
No 141
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.83 E-value=2.5e-20 Score=153.61 Aligned_cols=158 Identities=19% Similarity=0.143 Sum_probs=107.9
Q ss_pred ceeEEEEecccccceeeeeeeccCCCC--CccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccc-----------
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSS--IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLR----------- 70 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~----------- 70 (207)
..||+++|.+++| ||||+|+|++... ...+..|..+.....+.++|. .+.+|||+|..+.....
T Consensus 180 ~~kvaivG~~gvG-KSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~--~~~l~Dt~G~~~~~~~~~~~~e~~~~~~ 256 (439)
T 1mky_A 180 AIKVAIVGRPNVG-KSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNYR 256 (439)
T ss_dssp CEEEEEECSTTSS-HHHHHHHHHTSTTEEECCCC------CCEEEEETTE--EEEESSCSCC-----------CCSCCHH
T ss_pred CceEEEECCCCCC-HHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE--EEEEEECCCCccccccchhhHHHHHHHH
Confidence 4799999999999 9999999998864 233334444444567778886 46899999985443221
Q ss_pred -cceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHH-HHHHH
Q 028595 71 -PLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGE-ELRKQ 148 (207)
Q Consensus 71 -~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~-~~~~~ 148 (207)
..++..+|++++|+|+++..+.++. .+...+.. .+.|+++|+||+|+.+.+.. ..++.. .+.+.
T Consensus 257 ~~~~i~~ad~vllv~d~~~~~~~~~~--~i~~~l~~--~~~~~ilv~NK~Dl~~~~~~----------~~~~~~~~~~~~ 322 (439)
T 1mky_A 257 VVDSIEKADVVVIVLDATQGITRQDQ--RMAGLMER--RGRASVVVFNKWDLVVHREK----------RYDEFTKLFREK 322 (439)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHHH--HHHHHHHH--TTCEEEEEEECGGGSTTGGG----------CHHHHHHHHHHH
T ss_pred HHHHHhhCCEEEEEEeCCCCCCHHHH--HHHHHHHH--cCCCEEEEEECccCCCchhh----------HHHHHHHHHHHH
Confidence 2356779999999999987666653 34444443 37999999999999765432 333332 22232
Q ss_pred h---CCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 028595 149 I---GASYYIECSSKTQQNVKAVFDAAIKVVIK 178 (207)
Q Consensus 149 ~---~~~~~~e~Sa~~~~~i~~~f~~i~~~~~~ 178 (207)
+ +..+++++||++|.|++++|+.+.+.+..
T Consensus 323 ~~~~~~~~~~~~SA~~g~gv~~l~~~i~~~~~~ 355 (439)
T 1mky_A 323 LYFIDYSPLIFTSADKGWNIDRMIDAMNLAYAS 355 (439)
T ss_dssp CGGGTTSCEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred hccCCCCcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 2 33489999999999999999999887643
No 142
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.83 E-value=3.6e-21 Score=153.78 Aligned_cols=146 Identities=18% Similarity=0.188 Sum_probs=105.1
Q ss_pred ccccCceeeeeee----------EEEECC----eEEEEEEEeCCCCccccccccceecCCcEEEEEEeCC----------
Q 028595 32 WDYIPTVFDNFSA----------NVVAEG----TTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLV---------- 87 (207)
Q Consensus 32 ~~~~~t~~~~~~~----------~~~~~~----~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~---------- 87 (207)
+.|.||.++.+.. .+.+++ ..+.+.+|||+||+.++.+|.+|+++++++|+|||++
T Consensus 148 ~~Y~PT~~D~~~~r~~T~Gi~e~~f~~~~~~~~~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~ 227 (354)
T 2xtz_A 148 INYIPTKEDVLYARVRTTGVVEIQFSPVGENKKSGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDE 227 (354)
T ss_dssp TTCCCCHHHHHHCCCCCCSEEEEEECCCCE------EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCT
T ss_pred CCCCCCchheeeecccccceeeEEEEeccCccccceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECccccccccccc
Confidence 4688887655422 223455 6799999999999999999999999999999999998
Q ss_pred ChhhHHHHHHHHHHHHhhc--CCCCcEEEEeeCCCcccCccc---------ccCC-CC-CcccCHHHHHHHHHHh-----
Q 028595 88 SRASYENVLKKWIPELQHY--SPGVPVVLVGTKLDLREDKHY---------LADH-PG-LVPVTTAQGEELRKQI----- 149 (207)
Q Consensus 88 ~~~s~~~~~~~~~~~i~~~--~~~~piivv~nK~D~~~~~~~---------~~~~-~~-~~~v~~~~~~~~~~~~----- 149 (207)
+.+++++. ..|+..+... .+++|++|+|||+|+.+.+.. +.+. |. ..+.+.+++..++...
T Consensus 228 ~~~s~~~~-~~~~~~i~~~~~~~~~piiLvgNK~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~ 306 (354)
T 2xtz_A 228 QKNRMMET-KELFDWVLKQPCFEKTSFMLFLNKFDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELY 306 (354)
T ss_dssp TSBHHHHH-HHHHHHHHTCGGGSSCEEEEEEECHHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHH-HHHHHHHHhccccCCCeEEEEEECcchhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhh
Confidence 88999998 5666666543 268999999999998654321 0000 00 0112357777775431
Q ss_pred ----------CCcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 028595 150 ----------GASYYIECSSKTQQNVKAVFDAAIKVVIK 178 (207)
Q Consensus 150 ----------~~~~~~e~Sa~~~~~i~~~f~~i~~~~~~ 178 (207)
....+++|||+++.||+++|.++.+.+..
T Consensus 307 ~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~~~I~~ 345 (354)
T 2xtz_A 307 YQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVDETLRR 345 (354)
T ss_dssp HHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred hccccccccCcceEEEEEEeecchhHHHHHHHHHHHHHH
Confidence 22256899999999999999999998863
No 143
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.83 E-value=1.9e-20 Score=149.60 Aligned_cols=129 Identities=19% Similarity=0.255 Sum_probs=100.2
Q ss_pred EEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEEEeCCC----------hhhHHHHHHHHHHHHhhc--CCCCcE
Q 028595 45 NVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVS----------RASYENVLKKWIPELQHY--SPGVPV 112 (207)
Q Consensus 45 ~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~i~~~--~~~~pi 112 (207)
.+.++ .+.+.+|||+||+.++.+|.+|+.+++++|+|||+++ ..++.+. ..|+..+... .+++|+
T Consensus 187 ~~~~~--~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~-~~~~~~i~~~~~~~~~pi 263 (353)
T 1cip_A 187 HFTFK--DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHES-MKLFDSICNNKWFTDTSI 263 (353)
T ss_dssp EEEET--TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHH-HHHHHHHHTCGGGTTSEE
T ss_pred EEeeC--CeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHH-HHHHHHHHcCccccCCcE
Confidence 34444 4789999999999999999999999999999999999 5678888 5666666543 268999
Q ss_pred EEEeeCCCcccCccc-------ccCCCCCcccCHHHHHHHHHH-----------hCCcEEEEeccCCCCCHHHHHHHHHH
Q 028595 113 VLVGTKLDLREDKHY-------LADHPGLVPVTTAQGEELRKQ-----------IGASYYIECSSKTQQNVKAVFDAAIK 174 (207)
Q Consensus 113 ivv~nK~D~~~~~~~-------~~~~~~~~~v~~~~~~~~~~~-----------~~~~~~~e~Sa~~~~~i~~~f~~i~~ 174 (207)
+|+|||+|+.+.+.. +.+..+ ++..+++..++.. .++ .+++|||+++.||.++|.++.+
T Consensus 264 iLv~NK~DL~~~ki~~~~l~~~fp~~~g--~~~~~e~~~~~~~~f~~l~~~~~~~~~-~~~etSA~~~~nV~~vF~~v~~ 340 (353)
T 1cip_A 264 ILFLNKKDLFEEKIKKSPLTICYPEYAG--SNTYEEAAAYIQCQFEDLNKRKDTKEI-YTHFTCATDTKNVQFVFDAVTD 340 (353)
T ss_dssp EEEEECHHHHHHHHTTSCGGGTCTTCCS--CSCHHHHHHHHHHHHHTTCSCTTTCCE-EEEECCTTCHHHHHHHHHHHHH
T ss_pred EEEEECcCchhhhccccchhhcccccCC--CCCHHHHHHHHHHHHHHhhcccCCCce-EEEEEECcCchhHHHHHHHHHH
Confidence 999999998643210 000001 2477889998873 344 8899999999999999999999
Q ss_pred HHhCC
Q 028595 175 VVIKP 179 (207)
Q Consensus 175 ~~~~~ 179 (207)
.+...
T Consensus 341 ~i~~~ 345 (353)
T 1cip_A 341 VIIKN 345 (353)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88643
No 144
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.83 E-value=1.6e-22 Score=169.12 Aligned_cols=162 Identities=14% Similarity=0.088 Sum_probs=116.9
Q ss_pred cceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEE
Q 028595 3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 81 (207)
Q Consensus 3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i 81 (207)
...+|+++|..++| ||||+++|.+..+...+.++++..+ ...+..++ ...+.+|||||++.|..++..+++.+|++|
T Consensus 3 r~pkV~IvG~~~vG-KTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~~-g~~i~~iDTPGhe~f~~~~~~~~~~aD~vI 80 (537)
T 3izy_P 3 RSPVVTIMGHVDHG-KTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLPS-GEKITFLDTPGHAAFSAMRARGTQVTDIVI 80 (537)
T ss_dssp CCCBCEEEESTTTT-HHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSSC-SSCCBCEECSSSCCTTTSBBSSSBSBSSCE
T ss_pred CCCEEEEECCCCCC-HHHHHHHHhCCCcccccCCceeEEEeEEEEEeCC-CCEEEEEECCChHHHHHHHHHHHccCCEEE
Confidence 35789999999999 9999999998876655666655444 22333321 236889999999999999999999999999
Q ss_pred EEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHH---HHHhC-CcEEEEe
Q 028595 82 LAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEEL---RKQIG-ASYYIEC 157 (207)
Q Consensus 82 ~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~~-~~~~~e~ 157 (207)
+|+|+++....+.. .++..+.. .++|+++++||+|+.+.+.. ....+...+ +..++ ..+++++
T Consensus 81 LVVDa~dg~~~qt~--e~l~~~~~--~~vPiIVViNKiDl~~~~~~---------~v~~~l~~~~~~~e~~~~~~~iv~v 147 (537)
T 3izy_P 81 LVVAADDGVMKQTV--ESIQHAKD--AHVPIVLAINKCDKAEADPE---------KVKKELLAYDVVCEDYGGDVQAVHV 147 (537)
T ss_dssp EECBSSSCCCHHHH--HHHHHHHT--TTCCEEECCBSGGGTTTSCC---------SSSSHHHHTTSCCCCSSSSEEECCC
T ss_pred EEEECCCCccHHHH--HHHHHHHH--cCCcEEEEEecccccccchH---------HHHHHHHhhhhhHHhcCCCceEEEE
Confidence 99999997666654 23333333 37899999999999754321 011111111 12222 2379999
Q ss_pred ccCCCCCHHHHHHHHHHHHhCC
Q 028595 158 SSKTQQNVKAVFDAAIKVVIKP 179 (207)
Q Consensus 158 Sa~~~~~i~~~f~~i~~~~~~~ 179 (207)
||++|.|++++|+.+...+...
T Consensus 148 SAktG~GI~eLle~I~~l~~~~ 169 (537)
T 3izy_P 148 SALTGENMMALAEATIALAEML 169 (537)
T ss_dssp CSSSSCSSHHHHHHHHHHHTTC
T ss_pred ECCCCCCchhHHHHHHHhhhcc
Confidence 9999999999999999887533
No 145
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.82 E-value=3.6e-21 Score=141.40 Aligned_cols=113 Identities=7% Similarity=0.051 Sum_probs=85.8
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCCc---cccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecC----
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSIW---DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRG---- 76 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~---~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~---- 76 (207)
..+|+++|.+++| ||||+++|++..+.. .+.++.+..+ ..+.+.+|||||++.+...+..++.+
T Consensus 48 ~~~i~vvG~~g~G-KSsll~~l~~~~~~~~~~~~~~~~~~~~--------~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 118 (193)
T 2ged_A 48 QPSIIIAGPQNSG-KTSLLTLLTTDSVRPTVVSQEPLSAADY--------DGSGVTLVDFPGHVKLRYKLSDYLKTRAKF 118 (193)
T ss_dssp CCEEEEECCTTSS-HHHHHHHHHHSSCC------------CC--------CCTTCSEEEETTCCBSSCCHHHHHHHHGGG
T ss_pred CCEEEEECCCCCC-HHHHHHHHhcCCCCcccccCCCceeeee--------cCCeEEEEECCCCchHHHHHHHHHHhhccc
Confidence 5699999999999 999999999887543 2333333222 34678899999999998888888876
Q ss_pred CcEEEEEEeCC-ChhhHHHHHHHHHHHHhh-----cCCCCcEEEEeeCCCcccCcc
Q 028595 77 ADVFVLAFSLV-SRASYENVLKKWIPELQH-----YSPGVPVVLVGTKLDLREDKH 126 (207)
Q Consensus 77 ~d~~i~v~d~~-~~~s~~~~~~~~~~~i~~-----~~~~~piivv~nK~D~~~~~~ 126 (207)
+|++++|||++ +.+++..+ ..|+..+.. ..++.|+++|+||+|+.+...
T Consensus 119 ~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~ 173 (193)
T 2ged_A 119 VKGLIFMVDSTVDPKKLTTT-AEFLVDILSITESSCENGIDILIACNKSELFTARP 173 (193)
T ss_dssp EEEEEEEEETTCCHHHHHHH-HHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCCC
T ss_pred CCEEEEEEECCCCchhHHHH-HHHHHHHHhhhhhccccCCCEEEEEEchHhcCCCC
Confidence 89999999999 89999988 555554432 225899999999999976653
No 146
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.82 E-value=1.2e-20 Score=145.35 Aligned_cols=161 Identities=14% Similarity=0.045 Sum_probs=106.9
Q ss_pred ceeEEEEecccccceeeeeeeccCCC-CCccccCc-eeee-eeeEEEECCeEEEEEEEeCCCCcccccccc---------
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRS-SIWDYIPT-VFDN-FSANVVAEGTTVNLGLWDTAGQEDYNRLRP--------- 71 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~-~~~~~~~t-~~~~-~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~--------- 71 (207)
..+|+++|.+++| ||||+++|++.. +...+.++ ++.. ....+..++ ..+.||||||+..+.....
T Consensus 22 ~~~I~lvG~~g~G-KStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~iiDTpG~~~~~~~~~~~~~~i~~~ 98 (260)
T 2xtp_A 22 ELRIILVGKTGTG-KSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWGN--REIVIIDTPDMFSWKDHCEALYKEVQRC 98 (260)
T ss_dssp CEEEEEEECTTSC-HHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEETT--EEEEEEECCGGGGSSCCCHHHHHHHHHH
T ss_pred ceEEEEECCCCCC-HHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeCC--CEEEEEECcCCCCCCCCHHHHHHHHHHH
Confidence 5799999999999 999999999887 44445454 2222 233455555 5689999999876643322
Q ss_pred --ceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEee-CCCcccCcccccCCCCCcccCH-------HH
Q 028595 72 --LSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGT-KLDLREDKHYLADHPGLVPVTT-------AQ 141 (207)
Q Consensus 72 --~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~n-K~D~~~~~~~~~~~~~~~~v~~-------~~ 141 (207)
.+++++|++++|+|+++..........++..+.......|.++++| |+|+.+... .. ++
T Consensus 99 ~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~~~-----------~~~i~~~~~~~ 167 (260)
T 2xtp_A 99 YLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGGSL-----------MDYMHDSDNKA 167 (260)
T ss_dssp HHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCH-----------HHHHHHCCCHH
T ss_pred HHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCccH-----------HHHHHhcchHH
Confidence 2678899999999998633322211223332211111345655555 999974321 22 34
Q ss_pred HHHHHHHhCCcE--E--EEeccCCCCCHHHHHHHHHHHHhC
Q 028595 142 GEELRKQIGASY--Y--IECSSKTQQNVKAVFDAAIKVVIK 178 (207)
Q Consensus 142 ~~~~~~~~~~~~--~--~e~Sa~~~~~i~~~f~~i~~~~~~ 178 (207)
++.+++.++... + +++||+++.|++++|.++.+.+..
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~ 208 (260)
T 2xtp_A 168 LSKLVAACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLME 208 (260)
T ss_dssp HHHHHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCeEEEecCcccccccHHHHHHHHHHHHHHHHh
Confidence 566777776421 2 789999999999999999998865
No 147
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.82 E-value=5.5e-20 Score=150.23 Aligned_cols=162 Identities=13% Similarity=0.078 Sum_probs=105.9
Q ss_pred ceeEEEEecccccceeeeeeeccCCC---CCccccC--ceeeeeee-EEEE-------------C--C----eEEEEEEE
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRS---SIWDYIP--TVFDNFSA-NVVA-------------E--G----TTVNLGLW 58 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~---~~~~~~~--t~~~~~~~-~~~~-------------~--~----~~~~l~i~ 58 (207)
..+|+++|..++| ||||+++|++.. +..+..+ |+...|.. .+.. + + ....+.+|
T Consensus 8 ~~~I~iiG~~d~G-KSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ii 86 (408)
T 1s0u_A 8 EVNIGMVGHVDHG-KTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFV 86 (408)
T ss_dssp CEEEEEESCTTSS-HHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEE
T ss_pred ceEEEEEcCCCCC-HHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEE
Confidence 5799999999999 999999998543 3333334 44333322 2211 1 2 13789999
Q ss_pred eCCCCccccccccceecCCcEEEEEEeCCC----hhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCC
Q 028595 59 DTAGQEDYNRLRPLSYRGADVFVLAFSLVS----RASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGL 134 (207)
Q Consensus 59 D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~ 134 (207)
||||++.|.......+..+|++|+|+|+++ +++.+.+ ..| ..+ ...|+++++||+|+.+....
T Consensus 87 DtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l-~~~-~~l----~~~~iivv~NK~Dl~~~~~~------- 153 (408)
T 1s0u_A 87 DSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHL-MAL-EIL----GIDKIIIVQNKIDLVDEKQA------- 153 (408)
T ss_dssp ECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHH-HHH-HHT----TCCCEEEEEECTTSSCTTTT-------
T ss_pred ECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHH-HHH-HHc----CCCeEEEEEEccCCCCHHHH-------
Confidence 999999987777777788999999999995 4555554 222 221 23589999999999765421
Q ss_pred cccCHHHHHHHHHHh--CCcEEEEeccCCCCCHHHHHHHHHHHHhCCC
Q 028595 135 VPVTTAQGEELRKQI--GASYYIECSSKTQQNVKAVFDAAIKVVIKPP 180 (207)
Q Consensus 135 ~~v~~~~~~~~~~~~--~~~~~~e~Sa~~~~~i~~~f~~i~~~~~~~~ 180 (207)
....++++++++.+ ...+++++||++|.|++++++.|.+.+..+.
T Consensus 154 -~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~~~~ 200 (408)
T 1s0u_A 154 -EENYEQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIPTPK 200 (408)
T ss_dssp -TTHHHHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSCCCC
T ss_pred -HHHHHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCCCCc
Confidence 01345677777653 1238999999999999999999998776543
No 148
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.82 E-value=9e-22 Score=158.22 Aligned_cols=161 Identities=11% Similarity=0.029 Sum_probs=94.0
Q ss_pred cceeEEEEecccccceeeeeeeccCCC-CCcccc--------Cceeeee-eeEEEECCeEEEEEEEeCCCC-------cc
Q 028595 3 LLAKLACLFATQVTSFLLYVLSVSGRS-SIWDYI--------PTVFDNF-SANVVAEGTTVNLGLWDTAGQ-------ED 65 (207)
Q Consensus 3 ~~~ki~iiG~~~~GgKssli~~l~~~~-~~~~~~--------~t~~~~~-~~~~~~~~~~~~l~i~D~~G~-------~~ 65 (207)
..++|+++|.+++| ||||++++.+.. +...+. +|++..+ ...+..++..+.+.+|||||+ +.
T Consensus 36 ~~~~I~vvG~~g~G-KSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~ 114 (361)
T 2qag_A 36 FEFTLMVVGESGLG-KSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 114 (361)
T ss_dssp CEECEEECCCTTSC-HHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-------------
T ss_pred CCEEEEEEcCCCCC-HHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHH
Confidence 35789999999999 999999976553 333332 4554333 233444677789999999998 67
Q ss_pred cccccc-------ceecCCcE-----------EEEEEeCCC-hhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcc
Q 028595 66 YNRLRP-------LSYRGADV-----------FVLAFSLVS-RASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKH 126 (207)
Q Consensus 66 ~~~~~~-------~~~~~~d~-----------~i~v~d~~~-~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~ 126 (207)
+..++. .|+..+++ .+++|++++ ..++..+...|+..+ ..++|+++|+||+|+...++
T Consensus 115 ~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l---~~~~piIlV~NK~Dl~~~~e 191 (361)
T 2qag_A 115 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI---HNKVNIVPVIAKADTLTLKE 191 (361)
T ss_dssp -CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT---CS-SCEEEEEECCSSSCHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh---ccCCCEEEEEECCCCCCHHH
Confidence 777765 55554433 346677665 455555533455554 35799999999999976554
Q ss_pred cccCCCCCcccCH--HHHHHHHHHhCCcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 028595 127 YLADHPGLVPVTT--AQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKP 179 (207)
Q Consensus 127 ~~~~~~~~~~v~~--~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i~~~~~~~ 179 (207)
+ .. +++..+++.+++ +++++||+++.+ ++.|.++++.+...
T Consensus 192 v----------~~~k~~i~~~~~~~~i-~~~~~Sa~~~~~-~e~~~~l~~~i~~~ 234 (361)
T 2qag_A 192 R----------ERLKKRILDEIEEHNI-KIYHLPDAESDE-DEDFKEQTRLLKAS 234 (361)
T ss_dssp H----------HHHHHHHHHHTTCC-C-CSCCCC----------CHHHHHHHHHT
T ss_pred H----------HHHHHHHHHHHHHCCC-CEEeCCCcCCCc-chhHHHHHHHHHhc
Confidence 2 33 577788888887 899999999999 88888888887643
No 149
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.81 E-value=4.1e-20 Score=153.72 Aligned_cols=156 Identities=15% Similarity=0.054 Sum_probs=110.7
Q ss_pred ceeEEEEecccccceeeeeeeccCCC-------CCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceec
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRS-------SIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYR 75 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~-------~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~ 75 (207)
..+|+++|..++| ||||+++|++.. +..+..+.++... ...+..++ ..+.+|||||++.|......++.
T Consensus 19 ~~~I~iiG~~d~G-KSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~--~~i~iiDtPGh~~~~~~~~~~~~ 95 (482)
T 1wb1_A 19 NINLGIFGHIDHG-KTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLEN--YRITLVDAPGHADLIRAVVSAAD 95 (482)
T ss_dssp EEEEEEEECTTSS-HHHHHHHHHTTC--------------------CCCEEEETT--EEEEECCCSSHHHHHHHHHHHTT
T ss_pred CCEEEEECCCCCh-HHHHHHHHHCCCcccccccccccccCccEEecceEEEEECC--EEEEEEECCChHHHHHHHHHHHh
Confidence 4799999999999 999999999776 2222222222111 11334455 67899999999999888888899
Q ss_pred CCcEEEEEEeCCC---hhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHh-C-
Q 028595 76 GADVFVLAFSLVS---RASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI-G- 150 (207)
Q Consensus 76 ~~d~~i~v~d~~~---~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~- 150 (207)
.+|++|+|+|+++ +++.+.+ . .+.. .++|+++++||+|+.+.... ....+++++++... +
T Consensus 96 ~aD~~ilVvda~~g~~~qt~e~l-~----~~~~--~~ip~IvviNK~Dl~~~~~~--------~~~~~~l~~~l~~~~~~ 160 (482)
T 1wb1_A 96 IIDLALIVVDAKEGPKTQTGEHM-L----ILDH--FNIPIIVVITKSDNAGTEEI--------KRTEMIMKSILQSTHNL 160 (482)
T ss_dssp SCCEEEEEEETTTCSCHHHHHHH-H----HHHH--TTCCBCEEEECTTSSCHHHH--------HHHHHHHHHHHHHSSSG
T ss_pred hCCEEEEEEecCCCccHHHHHHH-H----HHHH--cCCCEEEEEECCCcccchhH--------HHHHHHHHHHHhhhccc
Confidence 9999999999998 5555554 1 2222 27888999999999753211 01345566666655 2
Q ss_pred -CcEEEEeccCCCCCHHHHHHHHHHHHh
Q 028595 151 -ASYYIECSSKTQQNVKAVFDAAIKVVI 177 (207)
Q Consensus 151 -~~~~~e~Sa~~~~~i~~~f~~i~~~~~ 177 (207)
..+++++||++|.|++++++.|.+.+.
T Consensus 161 ~~~~ii~vSA~~g~gI~~L~~~L~~~i~ 188 (482)
T 1wb1_A 161 KNSSIIPISAKTGFGVDELKNLIITTLN 188 (482)
T ss_dssp GGCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred ccceEEEEECcCCCCHHHHHHHHHHhhc
Confidence 238999999999999999999999875
No 150
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.81 E-value=5.2e-20 Score=145.22 Aligned_cols=141 Identities=18% Similarity=0.201 Sum_probs=103.7
Q ss_pred ccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEEEeCC----------ChhhHHHHHHHHHHHH
Q 028595 34 YIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLV----------SRASYENVLKKWIPEL 103 (207)
Q Consensus 34 ~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~i 103 (207)
..||+|.. ...+.+++ +.+++|||+||+.++++|.+|+++++++|+|||++ +.+++.+. ..|+..+
T Consensus 151 r~~TiGi~-~~~~~~~~--v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es-~~~~~~i 226 (327)
T 3ohm_A 151 RVPTTGII-EYPFDLQS--VIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEES-KALFRTI 226 (327)
T ss_dssp CCCCCSEE-EEEEEETT--EEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHH-HHHHHHH
T ss_pred cCceeeEE-EEEEEeec--eeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHH-HHHHHHH
Confidence 44556532 23444454 88999999999999999999999999999999665 67788877 4555555
Q ss_pred hhc-C-CCCcEEEEeeCCCcccCcc-------cccCCCCCcccCHHHHHHHHH----------HhCCcEEEEeccCCCCC
Q 028595 104 QHY-S-PGVPVVLVGTKLDLREDKH-------YLADHPGLVPVTTAQGEELRK----------QIGASYYIECSSKTQQN 164 (207)
Q Consensus 104 ~~~-~-~~~piivv~nK~D~~~~~~-------~~~~~~~~~~v~~~~~~~~~~----------~~~~~~~~e~Sa~~~~~ 164 (207)
... . +++|++|+|||+|+.+.+. .+.+..+ ..++.+++.+|.. ..++ .+++|||+++.|
T Consensus 227 ~~~~~~~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g-~~~~~e~a~~fi~~~F~~~~~~~~~~i-~~~~TsA~d~~n 304 (327)
T 3ohm_A 227 ITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDG-PQRDAQAAREFILKMFVDLNPDSDKII-YSHFTCATDTEN 304 (327)
T ss_dssp HTSGGGTTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCS-CSSCHHHHHHHHHHHHHSSCTTTTSCE-EEEECCTTCHHH
T ss_pred hhhhccCCceEEEEEECchhhhhhhccchHhhhchhccC-CCCCHHHHHHHHHHHHHhhcccccCCc-EEEEEEeecCHH
Confidence 432 2 6899999999999875431 1111111 1247788888843 3444 788999999999
Q ss_pred HHHHHHHHHHHHhCCC
Q 028595 165 VKAVFDAAIKVVIKPP 180 (207)
Q Consensus 165 i~~~f~~i~~~~~~~~ 180 (207)
|+.+|..+.+.+++..
T Consensus 305 V~~vF~~v~~~Il~~~ 320 (327)
T 3ohm_A 305 IRFVFAAVKDTILQLN 320 (327)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999988653
No 151
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.81 E-value=2.8e-20 Score=155.94 Aligned_cols=117 Identities=10% Similarity=0.043 Sum_probs=82.9
Q ss_pred cceeEEEEecccccceeeeeeeccCCC-----------------CCccccC---ceeeee-eeEEEECCeEEEEEEEeCC
Q 028595 3 LLAKLACLFATQVTSFLLYVLSVSGRS-----------------SIWDYIP---TVFDNF-SANVVAEGTTVNLGLWDTA 61 (207)
Q Consensus 3 ~~~ki~iiG~~~~GgKssli~~l~~~~-----------------~~~~~~~---t~~~~~-~~~~~~~~~~~~l~i~D~~ 61 (207)
...+|+++|.+++| ||||+++|+... ...++.+ ..|.+. .....+....+.+.|||||
T Consensus 12 ~~r~IaIiG~~~aG-KTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTP 90 (528)
T 3tr5_A 12 MRRTFAIISHPDAG-KTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTP 90 (528)
T ss_dssp TEEEEEEEECTTSS-HHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCC
T ss_pred cCCEEEEECCCCCc-HHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECC
Confidence 46799999999999 999999996111 0111000 011111 1122222234779999999
Q ss_pred CCccccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccC
Q 028595 62 GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED 124 (207)
Q Consensus 62 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~ 124 (207)
|++++...+..+++.+|++|+|+|+++..+.+.. ..| ..+.. .++|+++++||+|+...
T Consensus 91 G~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~-~~~-~~~~~--~~iPiivviNK~Dl~~~ 149 (528)
T 3tr5_A 91 GHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTI-KLM-EVCRL--RHTPIMTFINKMDRDTR 149 (528)
T ss_dssp CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHH-HHH-HHHHT--TTCCEEEEEECTTSCCS
T ss_pred CchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHH-HHH-HHHHH--cCCCEEEEEeCCCCccc
Confidence 9999999999999999999999999998777765 444 34433 27999999999998643
No 152
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.81 E-value=1.8e-19 Score=144.80 Aligned_cols=160 Identities=15% Similarity=0.110 Sum_probs=109.4
Q ss_pred EEEEecccccceeeeeeeccCCCCCc-cccCceeeeeeeEEEECCeEEEEEEEeCCCCcc---------ccccccceecC
Q 028595 7 LACLFATQVTSFLLYVLSVSGRSSIW-DYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED---------YNRLRPLSYRG 76 (207)
Q Consensus 7 i~iiG~~~~GgKssli~~l~~~~~~~-~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~---------~~~~~~~~~~~ 76 (207)
|+++|.+++| ||||+|+|++..... .+..+..+.....+.++| ..+.+|||+|.-. +.... ..+..
T Consensus 182 V~lvG~~naG-KSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g--~~v~l~DT~G~i~~lp~~lve~f~~tl-~~~~~ 257 (364)
T 2qtf_A 182 IGIVGYTNSG-KTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINN--RKIMLVDTVGFIRGIPPQIVDAFFVTL-SEAKY 257 (364)
T ss_dssp EEEECBTTSS-HHHHHHHHHCC-----------CCSCEEEEEETT--EEEEEEECCCBCSSCCGGGHHHHHHHH-HGGGG
T ss_pred EEEECCCCCC-HHHHHHHHHCCCccccCCcccccCCEEEEEEECC--EEEEEEeCCCchhcCCHHHHHHHHHHH-HHHHh
Confidence 8999999999 999999999887532 222222233455777888 4578999999622 22222 24678
Q ss_pred CcEEEEEEeCCChh--hHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHh-C-C
Q 028595 77 ADVFVLAFSLVSRA--SYENVLKKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQI-G-A 151 (207)
Q Consensus 77 ~d~~i~v~d~~~~~--s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~-~ 151 (207)
+|++++|+|++++. ..... ..|...+.... .+.|+++|+||+|+...... ...+.+..+++.+ . .
T Consensus 258 aD~il~VvD~s~~~~~~~~~~-~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~---------~~~~~~~~l~~~l~~~~ 327 (364)
T 2qtf_A 258 SDALILVIDSTFSENLLIETL-QSSFEILREIGVSGKPILVTLNKIDKINGDLY---------KKLDLVEKLSKELYSPI 327 (364)
T ss_dssp SSEEEEEEETTSCHHHHHHHH-HHHHHHHHHHTCCSCCEEEEEECGGGCCSCHH---------HHHHHHHHHHHHHCSCE
T ss_pred CCEEEEEEECCCCcchHHHHH-HHHHHHHHHhCcCCCCEEEEEECCCCCCchHH---------HHHHHHHHHHHHhcCCC
Confidence 99999999999876 45444 55666665543 57899999999998643210 0123455556665 2 2
Q ss_pred cEEEEeccCCCCCHHHHHHHHHHHHhCCC
Q 028595 152 SYYIECSSKTQQNVKAVFDAAIKVVIKPP 180 (207)
Q Consensus 152 ~~~~e~Sa~~~~~i~~~f~~i~~~~~~~~ 180 (207)
.+++++||+++.|++++++.+.+.+..+.
T Consensus 328 ~~~~~~SA~~g~gi~~L~~~I~~~l~~~~ 356 (364)
T 2qtf_A 328 FDVIPISALKRTNLELLRDKIYQLATQLS 356 (364)
T ss_dssp EEEEECBTTTTBSHHHHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCcCHHHHHHHHHHHhcccC
Confidence 26789999999999999999998776543
No 153
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.80 E-value=1.9e-19 Score=144.30 Aligned_cols=129 Identities=15% Similarity=0.178 Sum_probs=91.3
Q ss_pred EEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEEEeCCC----------hhhHHHHHHHHHHHHhhc--CCCCcE
Q 028595 45 NVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVS----------RASYENVLKKWIPELQHY--SPGVPV 112 (207)
Q Consensus 45 ~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~i~~~--~~~~pi 112 (207)
.+.+++ +.+.+|||+||+.++.+|.+|+.+++++|||||+++ ..++.+. ..|+..+... .+++|+
T Consensus 195 ~~~~~~--~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es-~~~~~~i~~~~~~~~~pi 271 (362)
T 1zcb_A 195 DFEIKN--VPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTES-LNIFETIVNNRVFSNVSI 271 (362)
T ss_dssp EEEETT--EEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHH-HHHHHHHHTCGGGTTSEE
T ss_pred EeeeCC--eEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHH-HHHHHHHhcchhhCCCCE
Confidence 344444 789999999999999999999999999999999999 7899988 5566655443 268999
Q ss_pred EEEeeCCCcccCccc-------ccCCCCCcccCHHHHHHHHH-----------HhCCcEEEEeccCCCCCHHHHHHHHHH
Q 028595 113 VLVGTKLDLREDKHY-------LADHPGLVPVTTAQGEELRK-----------QIGASYYIECSSKTQQNVKAVFDAAIK 174 (207)
Q Consensus 113 ivv~nK~D~~~~~~~-------~~~~~~~~~v~~~~~~~~~~-----------~~~~~~~~e~Sa~~~~~i~~~f~~i~~ 174 (207)
+|++||+|+.+.+.. +.+..+ ..+..+++..++. ..++ .+++|||+++.||+++|.++.+
T Consensus 272 ILv~NK~DL~~~ki~~~~l~~~fp~y~g-~~~~~~e~~~~~~~~f~~l~~~~~~~~~-~~~~tSA~d~~nV~~vF~~v~~ 349 (362)
T 1zcb_A 272 ILFLNKTDLLEEKVQVVSIKDYFLEFEG-DPHCLRDVQKFLVECFRGKRRDQQQRPL-YHHFTTAINTENIRLVFRDVKD 349 (362)
T ss_dssp EEEEECHHHHHHHTTTCCGGGTCTTCCS-CTTCHHHHHHHHHHHHHTTCSSCC--CC-EEEECCTTCHHHHHHHHHHHHH
T ss_pred EEEEEChhhhhhhccccchhhcCccccC-CCCCHHHHHHHHHHHHHHhhcccCCCce-EEEEEecCCchhHHHHHHHHHH
Confidence 999999998643210 000001 1146788888762 2344 7899999999999999999999
Q ss_pred HHhC
Q 028595 175 VVIK 178 (207)
Q Consensus 175 ~~~~ 178 (207)
.+..
T Consensus 350 ~i~~ 353 (362)
T 1zcb_A 350 TILH 353 (362)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8864
No 154
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.80 E-value=1.7e-19 Score=147.45 Aligned_cols=162 Identities=12% Similarity=0.073 Sum_probs=112.0
Q ss_pred ceeEEEEecccccceeeeeeeccCCC---CCccccC--ceeeeeee-EEEE-------------C--C----eEEEEEEE
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRS---SIWDYIP--TVFDNFSA-NVVA-------------E--G----TTVNLGLW 58 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~---~~~~~~~--t~~~~~~~-~~~~-------------~--~----~~~~l~i~ 58 (207)
..+|+++|..++| ||||+++|++.. +..+..+ |+...|.. .+.. + + ....+.+|
T Consensus 10 ~~~I~iiG~~~~G-KSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ii 88 (410)
T 1kk1_A 10 EVNIGMVGHVDHG-KTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFI 88 (410)
T ss_dssp EEEEEEECSTTSS-HHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEE
T ss_pred ccEEEEECCCCCC-HHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEEE
Confidence 4789999999999 999999998543 2333334 44333322 2211 1 1 13789999
Q ss_pred eCCCCccccccccceecCCcEEEEEEeCCC----hhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCC
Q 028595 59 DTAGQEDYNRLRPLSYRGADVFVLAFSLVS----RASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGL 134 (207)
Q Consensus 59 D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~ 134 (207)
||||++.|.......+..+|++|+|+|+++ +++.+.+ ..+ ..+ ...|+++++||+|+.+....
T Consensus 89 DtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l-~~~-~~~----~~~~iivviNK~Dl~~~~~~------- 155 (410)
T 1kk1_A 89 DAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHL-MAL-QII----GQKNIIIAQNKIELVDKEKA------- 155 (410)
T ss_dssp ECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHH-HHH-HHH----TCCCEEEEEECGGGSCHHHH-------
T ss_pred ECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHH-HHH-HHc----CCCcEEEEEECccCCCHHHH-------
Confidence 999999987766677778999999999995 4555554 222 222 23589999999999764320
Q ss_pred cccCHHHHHHHHHHh--CCcEEEEeccCCCCCHHHHHHHHHHHHhCCC
Q 028595 135 VPVTTAQGEELRKQI--GASYYIECSSKTQQNVKAVFDAAIKVVIKPP 180 (207)
Q Consensus 135 ~~v~~~~~~~~~~~~--~~~~~~e~Sa~~~~~i~~~f~~i~~~~~~~~ 180 (207)
....++++++++.. ...+++++||++|.|++++++.|.+.+..+.
T Consensus 156 -~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~~p~ 202 (410)
T 1kk1_A 156 -LENYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIPTPK 202 (410)
T ss_dssp -HHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSCCCC
T ss_pred -HHHHHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCCCCc
Confidence 01334556665542 2238999999999999999999998776554
No 155
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.80 E-value=4.2e-20 Score=140.54 Aligned_cols=165 Identities=15% Similarity=0.106 Sum_probs=105.5
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCCccccCc--eeeee-eeEEEECCeEEEEEEEeCCCCc-----------ccccc
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPT--VFDNF-SANVVAEGTTVNLGLWDTAGQE-----------DYNRL 69 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t--~~~~~-~~~~~~~~~~~~l~i~D~~G~~-----------~~~~~ 69 (207)
.+||+++|.+++| ||||+|+|++..+.....++ ++... ...+..++ ..+.||||||.. .+...
T Consensus 29 ~~~i~lvG~~g~G-KStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~--~~i~liDTpG~~~~~~~~~~~~~~~~~~ 105 (239)
T 3lxx_A 29 QLRIVLVGKTGAG-KSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKE--TELVVVDTPGIFDTEVPNAETSKEIIRC 105 (239)
T ss_dssp EEEEEEECCTTSS-HHHHHHHHHTSCCSCC-------CCSCEEEEEEETT--EEEEEEECCSCC-----CHHHHHHHHHH
T ss_pred ceEEEEECCCCCC-HHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCC--ceEEEEECCCccCCCCCHHHHHHHHHHH
Confidence 5799999999999 99999999998875554442 22222 33555666 467899999943 33344
Q ss_pred ccceecCCcEEEEEEeCCChhhH--HHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHH
Q 028595 70 RPLSYRGADVFVLAFSLVSRASY--ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRK 147 (207)
Q Consensus 70 ~~~~~~~~d~~i~v~d~~~~~s~--~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~ 147 (207)
...+++++|++|+|+|+++.... ..+ ..+...+... ...|+++|+||+|+.+.... .+ ......+.++.+++
T Consensus 106 ~~~~~~~~~~~l~v~d~~~~~~~~~~~l-~~~~~~~~~~-~~~~~iiv~nK~D~~~~~~~-~~---~i~~~~~~l~~l~~ 179 (239)
T 3lxx_A 106 ILLTSPGPHALLLVVPLGRYTEEEHKAT-EKILKMFGER-ARSFMILIFTRKDDLGDTNL-HD---YLREAPEDIQDLMD 179 (239)
T ss_dssp HHHTTTCCSEEEEEEETTCCSSHHHHHH-HHHHHHHHHH-HGGGEEEEEECGGGC----------------CHHHHHHHH
T ss_pred HHhcCCCCcEEEEEeeCCCCCHHHHHHH-HHHHHHhhhh-ccceEEEEEeCCccCCcccH-HH---HHHhchHHHHHHHH
Confidence 45556788999999998764332 222 2222222211 24699999999998765432 00 00001246888889
Q ss_pred HhCCcEEEEeccCCC-----CCHHHHHHHHHHHHhC
Q 028595 148 QIGASYYIECSSKTQ-----QNVKAVFDAAIKVVIK 178 (207)
Q Consensus 148 ~~~~~~~~e~Sa~~~-----~~i~~~f~~i~~~~~~ 178 (207)
..+. .|+.+++..+ .++.++|..+.+.+.+
T Consensus 180 ~~~~-~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~ 214 (239)
T 3lxx_A 180 IFGD-RYCALNNKATGAEQEAQRAQLLGLIQRVVRE 214 (239)
T ss_dssp HHSS-SEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCC-EEEEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence 9987 7777776644 6899999998887753
No 156
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.80 E-value=3.6e-19 Score=143.95 Aligned_cols=130 Identities=15% Similarity=0.230 Sum_probs=97.8
Q ss_pred EEECCeEEEEEEEeCCCCccccccccceecCCcEEEEEEeCCC----------hhhHHHHHHHHHHHHhhc--CCCCcEE
Q 028595 46 VVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVS----------RASYENVLKKWIPELQHY--SPGVPVV 113 (207)
Q Consensus 46 ~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~----------~~s~~~~~~~~~~~i~~~--~~~~pii 113 (207)
+.+++ +.+.+|||+||+.++.+|..|+++++++|+|||+++ .+++.++ ..|+..+... .+++|++
T Consensus 212 ~~~~~--v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~-~~~~~~i~~~~~~~~~pii 288 (402)
T 1azs_C 212 FQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEA-LNLFKSIWNNRWLRTISVI 288 (402)
T ss_dssp EEETT--EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHH-HHHHHHHHTCTTCSSCCEE
T ss_pred eecCC--ccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHH-HHHHHHHHhcccCCCCeEE
Confidence 44454 889999999999999999999999999999999999 8999998 6777777654 2689999
Q ss_pred EEeeCCCcccCcc---c--cc----CC------------CCCcccCHHHHHHHH-----HHh-------CCcEEEEeccC
Q 028595 114 LVGTKLDLREDKH---Y--LA----DH------------PGLVPVTTAQGEELR-----KQI-------GASYYIECSSK 160 (207)
Q Consensus 114 vv~nK~D~~~~~~---~--~~----~~------------~~~~~v~~~~~~~~~-----~~~-------~~~~~~e~Sa~ 160 (207)
|+|||+|+...+. + +. +. ++.. ...+++..|+ +.. ....+++|||+
T Consensus 289 LvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~-~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~ 367 (402)
T 1azs_C 289 LFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGED-PRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAV 367 (402)
T ss_dssp EEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCC-HHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTT
T ss_pred EEEEChhhhhhhhcccccchhhccccccccccccccccccCCc-ccHHHHHHHHHHHHHHhhccccccCcccEEEEEEee
Confidence 9999999865432 1 00 00 0100 1245666664 221 12267899999
Q ss_pred CCCCHHHHHHHHHHHHhCC
Q 028595 161 TQQNVKAVFDAAIKVVIKP 179 (207)
Q Consensus 161 ~~~~i~~~f~~i~~~~~~~ 179 (207)
++.||+++|.++.+.+...
T Consensus 368 d~~nV~~vF~~v~~~I~~~ 386 (402)
T 1azs_C 368 DTENIRRVFNDCRDIIQRM 386 (402)
T ss_dssp CHHHHHHHHHHHHHHHHHH
T ss_pred cCcCHHHHHHHHHHHHHHH
Confidence 9999999999998887643
No 157
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.79 E-value=2e-19 Score=152.42 Aligned_cols=166 Identities=15% Similarity=0.086 Sum_probs=108.1
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCCcc----ccCceeeeeeeEE-------------EECCeEEEEEEEeCCCCccc
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSIWD----YIPTVFDNFSANV-------------VAEGTTVNLGLWDTAGQEDY 66 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~----~~~t~~~~~~~~~-------------~~~~~~~~l~i~D~~G~~~~ 66 (207)
..+|+++|..++| ||||+++|.+..+... ..++++..+.... .++.....+.+|||||++.|
T Consensus 5 ~~~V~IvGh~d~G-KTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F 83 (594)
T 1g7s_A 5 SPIVSVLGHVDHG-KTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAF 83 (594)
T ss_dssp CCEEEEECSTTSS-HHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCC
T ss_pred CcEEEEECCCCCc-HHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHH
Confidence 4689999999999 9999999987654321 1223333221100 00011125899999999999
Q ss_pred cccccceecCCcEEEEEEeCCC---hhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCC-------CCcc
Q 028595 67 NRLRPLSYRGADVFVLAFSLVS---RASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHP-------GLVP 136 (207)
Q Consensus 67 ~~~~~~~~~~~d~~i~v~d~~~---~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~-------~~~~ 136 (207)
..++..+++.+|++|+|+|+++ +++++.+ . + +.. .++|+++++||+|+.+........+ ....
T Consensus 84 ~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l-~-~---l~~--~~vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~ 156 (594)
T 1g7s_A 84 TTLRKRGGALADLAILIVDINEGFKPQTQEAL-N-I---LRM--YRTPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQ 156 (594)
T ss_dssp TTSBCSSSBSCSEEEEEEETTTCCCHHHHHHH-H-H---HHH--TTCCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHH
T ss_pred HHHHHHHHhhCCEEEEEEECCCCccHhHHHHH-H-H---HHH--cCCeEEEEecccccccccccccCCchHHHHHHhHHH
Confidence 9999999999999999999999 6776655 2 2 222 3799999999999965321000000 0000
Q ss_pred c---CHH---HHHHHHHHhC--------------CcEEEEeccCCCCCHHHHHHHHHHHHh
Q 028595 137 V---TTA---QGEELRKQIG--------------ASYYIECSSKTQQNVKAVFDAAIKVVI 177 (207)
Q Consensus 137 v---~~~---~~~~~~~~~~--------------~~~~~e~Sa~~~~~i~~~f~~i~~~~~ 177 (207)
+ ..+ +........+ ..+++.+||++|.|++++++++...+.
T Consensus 157 v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~ 217 (594)
T 1g7s_A 157 VQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ 217 (594)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcc
Confidence 0 000 1111112222 237899999999999999999998775
No 158
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.79 E-value=1.9e-20 Score=155.04 Aligned_cols=154 Identities=17% Similarity=0.069 Sum_probs=103.1
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCC--------Ccccccccccee
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAG--------QEDYNRLRPLSY 74 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G--------~~~~~~~~~~~~ 74 (207)
..+|+++|.++|| ||||+|+|++.++. ...++.|.+. .....+......+.+||||| ++.+...+..++
T Consensus 23 ~~~V~lvG~~nvG-KSTL~n~l~~~~~~-~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~ 100 (456)
T 4dcu_A 23 KPVVAIVGRPNVG-KSTIFNRIAGERIS-IVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAM 100 (456)
T ss_dssp CCEEEEECSSSSS-HHHHHHHHEEEEEC------------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCc-HHHHHHHHhCCCCc-ccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhH
Confidence 3589999999999 99999999988753 2223334333 22333444446789999999 666777788889
Q ss_pred cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEE
Q 028595 75 RGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYY 154 (207)
Q Consensus 75 ~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 154 (207)
.++|++|+|+|..+..+..+ ..+...+.+ .+.|+++|+||+|+.+.... ..++ ..++....
T Consensus 101 ~~ad~il~VvD~~~~~~~~d--~~l~~~l~~--~~~pvilV~NK~D~~~~~~~--------------~~e~-~~lg~~~~ 161 (456)
T 4dcu_A 101 DEADVIIFMVNGREGVTAAD--EEVAKILYR--TKKPVVLAVNKLDNTEMRAN--------------IYDF-YSLGFGEP 161 (456)
T ss_dssp HHCSEEEEEEESSSCSCHHH--HHHHHHHTT--CCSCEEEEEECC-----------------------CCS-GGGSSSSE
T ss_pred hhCCEEEEEEeCCCCCChHH--HHHHHHHHH--cCCCEEEEEECccchhhhhh--------------HHHH-HHcCCCce
Confidence 99999999999887544443 244555544 48999999999998643221 1111 12344456
Q ss_pred EEeccCCCCCHHHHHHHHHHHHhC
Q 028595 155 IECSSKTQQNVKAVFDAAIKVVIK 178 (207)
Q Consensus 155 ~e~Sa~~~~~i~~~f~~i~~~~~~ 178 (207)
+++||.+|.|+.++++.+.+.+..
T Consensus 162 ~~iSA~~g~gv~~L~~~i~~~l~~ 185 (456)
T 4dcu_A 162 YPISGTHGLGLGDLLDAVAEHFKN 185 (456)
T ss_dssp EECCTTTCTTHHHHHHHHHTTGGG
T ss_pred EEeecccccchHHHHHHHHhhccc
Confidence 799999999999999999887754
No 159
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.79 E-value=2.6e-20 Score=155.21 Aligned_cols=156 Identities=10% Similarity=-0.028 Sum_probs=99.3
Q ss_pred ceeEEEEecccccceeeeeeeccCCC--CCccccC---------------------------ceeeee-eeEEEECCeEE
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRS--SIWDYIP---------------------------TVFDNF-SANVVAEGTTV 53 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~--~~~~~~~---------------------------t~~~~~-~~~~~~~~~~~ 53 (207)
.+||+++|..++| ||||+++|++.. +...+.+ ..|.+. .....++...+
T Consensus 33 ~~ki~iiG~~~~G-KSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~ 111 (483)
T 3p26_A 33 HLSFVVLGHVDAG-KSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRA 111 (483)
T ss_dssp EEEEEEESCGGGT-HHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSSC
T ss_pred ceEEEEECCCCCC-HHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCCc
Confidence 5799999999999 999999997541 1111000 012122 11223334457
Q ss_pred EEEEEeCCCCccccccccceecCCcEEEEEEeCCChhhHHH-----HHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccc
Q 028595 54 NLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYEN-----VLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYL 128 (207)
Q Consensus 54 ~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~-----~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~ 128 (207)
.+.||||||+++|......++..+|++|+|+|+++.++... .....+..+... ...|+++|+||+|+.+.+..
T Consensus 112 ~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~-~~~~iIvviNK~Dl~~~~~~- 189 (483)
T 3p26_A 112 NFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL-GIHNLIIAMNKMDNVDWSQQ- 189 (483)
T ss_dssp EEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT-TCCCEEEEEECGGGGTTCHH-
T ss_pred eEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc-CCCcEEEEEECcCcccchHH-
Confidence 89999999999999988999999999999999999754321 102222222221 23579999999999764321
Q ss_pred cCCCCCcccCHHHHHHHHHHhCC----cEEEEeccCCCCCHHH
Q 028595 129 ADHPGLVPVTTAQGEELRKQIGA----SYYIECSSKTQQNVKA 167 (207)
Q Consensus 129 ~~~~~~~~v~~~~~~~~~~~~~~----~~~~e~Sa~~~~~i~~ 167 (207)
......+++..+...+++ .+++++||++|.|+++
T Consensus 190 -----~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e 227 (483)
T 3p26_A 190 -----RFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK 227 (483)
T ss_dssp -----HHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred -----HHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence 000012344555555553 3899999999999975
No 160
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.79 E-value=2.2e-19 Score=137.34 Aligned_cols=167 Identities=13% Similarity=0.079 Sum_probs=103.6
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCCccccCceeee---eeeEEEECCeEEEEEEEeCCCC--------ccccccccc
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDN---FSANVVAEGTTVNLGLWDTAGQ--------EDYNRLRPL 72 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~---~~~~~~~~~~~~~l~i~D~~G~--------~~~~~~~~~ 72 (207)
..+|+++|.+++| ||||+|++++........++.+.+ ....+..++ ..+.+|||||. +.+......
T Consensus 21 ~l~I~lvG~~g~G-KSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~~--~~i~liDTPG~~~~~~~~~~~~~~~i~~ 97 (247)
T 3lxw_A 21 TRRLILVGRTGAG-KSATGNSILGQRRFFSRLGATSVTRACTTGSRRWDK--CHVEVVDTPDIFSSQVSKTDPGCEERGH 97 (247)
T ss_dssp EEEEEEESSTTSS-HHHHHHHHHTSCCC---------CCSCEEEEEEETT--EEEEEEECCSCSSTTHHHHSTTSHHHHH
T ss_pred ceEEEEECCCCCc-HHHHHHHHhCCCCccccCCCCCccccEEEEEEEECC--cEEEEEECCCCCCCCCCcHHHHHHHHHH
Confidence 5799999999999 999999999888654333332222 123444555 56889999996 333332333
Q ss_pred ee----cCCcEEEEEEeCCChhhHHHHHHHHHHHH-hhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHH
Q 028595 73 SY----RGADVFVLAFSLVSRASYENVLKKWIPEL-QHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRK 147 (207)
Q Consensus 73 ~~----~~~d~~i~v~d~~~~~s~~~~~~~~~~~i-~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~ 147 (207)
++ +++|++|+|+|+++....+.....++..+ .....+.|+++++||.|+.+.... + -......+..+.+.+
T Consensus 98 ~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~~~~--~--~l~~~~~~~l~~l~~ 173 (247)
T 3lxw_A 98 CYLLSAPGPHALLLVTQLGRFTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGGSLH--D--YVSNTENRALRELVA 173 (247)
T ss_dssp HHHHHTTCCSEEEEEEETTBCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCCHH--H--HHHHCCCHHHHHHHH
T ss_pred HHHhcCCCCCEEEEEEeCCCCCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcCCCCHH--H--HHhhcccHHHHHHHH
Confidence 33 89999999999986322221112222222 111136899999999999653210 0 000001145688888
Q ss_pred HhCCcEEEEeccCC-----CCCHHHHHHHHHHHHhC
Q 028595 148 QIGASYYIECSSKT-----QQNVKAVFDAAIKVVIK 178 (207)
Q Consensus 148 ~~~~~~~~e~Sa~~-----~~~i~~~f~~i~~~~~~ 178 (207)
..|. .++.+++.. +.++.++++.+.+.+..
T Consensus 174 ~~g~-~~~~~~~~~~~~~~~~~v~~Ll~~i~~~~~~ 208 (247)
T 3lxw_A 174 ECGG-RVCAFDNRATGREQEAQVEQLLGMVEGLVLE 208 (247)
T ss_dssp HTTT-CEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCC-eEEEEeCCCCccccHHHHHHHHHHHHHHHHH
Confidence 8887 666666554 58999999999888864
No 161
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.79 E-value=3.5e-20 Score=143.84 Aligned_cols=160 Identities=11% Similarity=-0.003 Sum_probs=93.7
Q ss_pred cceeEEEEecccccceeeeeeeccCCCC-Cccc-------cCceeeee-eeEEEECCeEEEEEEEeCCCCccc-------
Q 028595 3 LLAKLACLFATQVTSFLLYVLSVSGRSS-IWDY-------IPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDY------- 66 (207)
Q Consensus 3 ~~~ki~iiG~~~~GgKssli~~l~~~~~-~~~~-------~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~------- 66 (207)
..++|+++|.+++| ||||+|++++... ...+ .+|++... ...+..++..+.+.+|||||....
T Consensus 7 ~~~~I~vvG~~g~G-KSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~ 85 (274)
T 3t5d_A 7 FEFTLMVVGESGLG-KSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW 85 (274)
T ss_dssp CEEEEEEEECTTSS-HHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTT
T ss_pred cEEEEEEECCCCCC-HHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhH
Confidence 35899999999999 9999999776654 3344 55655444 334444566689999999997322
Q ss_pred cccc-------ccee-------------cCCcEEEEEEeCCChh-hHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCc
Q 028595 67 NRLR-------PLSY-------------RGADVFVLAFSLVSRA-SYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK 125 (207)
Q Consensus 67 ~~~~-------~~~~-------------~~~d~~i~v~d~~~~~-s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~ 125 (207)
..+. ..|+ ..+|+++++++.+... ...+ ..++..+.. ++|+++|+||+|+....
T Consensus 86 ~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d--~~~l~~l~~---~~pvi~V~nK~D~~~~~ 160 (274)
T 3t5d_A 86 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLD--IEFMKRLHE---KVNIIPLIAKADTLTPE 160 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHH--HHHHHHHTT---TSCEEEEESSGGGSCHH
T ss_pred HHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHH--HHHHHHHhc---cCCEEEEEeccCCCCHH
Confidence 2221 1222 2377999999776522 2222 345566654 79999999999986443
Q ss_pred ccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCCCCCHHHHHHHHHHHHh
Q 028595 126 HYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVI 177 (207)
Q Consensus 126 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i~~~~~ 177 (207)
+. ....+.+.+.....++ +++++||.++++++++++++.+.+.
T Consensus 161 e~--------~~~~~~i~~~l~~~~i-~v~~~sa~~~~~~~~l~~~l~~~~p 203 (274)
T 3t5d_A 161 EC--------QQFKKQIMKEIQEHKI-KIYEFPETDDEEENKLVKKIKDRLP 203 (274)
T ss_dssp HH--------HHHHHHHHHHHHHTTC-CCCCC-----------CHHHHHTCS
T ss_pred HH--------HHHHHHHHHHHHHcCC-eEEcCCCCCChhHHHHHHHHhcCCC
Confidence 21 0022345556666777 7899999999999999999988763
No 162
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.78 E-value=3.7e-20 Score=151.13 Aligned_cols=165 Identities=15% Similarity=0.079 Sum_probs=115.5
Q ss_pred ceeEEEEecccccceeeeeeeccCC--------CCCcc--cc-----Cceeeee-eeEEEECCeEEEEEEEeCCCCcccc
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGR--------SSIWD--YI-----PTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYN 67 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~--------~~~~~--~~-----~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~ 67 (207)
..+|+++|..++| ||||+++|++. .+... .. .+.|.+. .....++.....+.+|||||+++|.
T Consensus 11 ~~~I~iiG~~~~G-KSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~~f~ 89 (405)
T 2c78_A 11 HVNVGTIGHVDHG-KTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHADYI 89 (405)
T ss_dssp EEEEEEECSTTSS-HHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSGGGH
T ss_pred eEEEEEEcCCCCC-HHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChHHHH
Confidence 4799999999999 99999999863 11110 00 0112222 1223333344678999999999998
Q ss_pred ccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCc-EEEEeeCCCcccCcccccCCCCCcccCHHHHHHHH
Q 028595 68 RLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVP-VVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELR 146 (207)
Q Consensus 68 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~p-iivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~ 146 (207)
.....++..+|++|+|+|+++....+. ..++..+... ++| +++++||+|+.+.... .....+++++++
T Consensus 90 ~~~~~~~~~aD~~ilVvda~~g~~~qt--~~~l~~~~~~--~ip~iivviNK~Dl~~~~~~-------~~~~~~~~~~~l 158 (405)
T 2c78_A 90 KNMITGAAQMDGAILVVSAADGPMPQT--REHILLARQV--GVPYIVVFMNKVDMVDDPEL-------LDLVEMEVRDLL 158 (405)
T ss_dssp HHHHHHHTTCSSEEEEEETTTCCCHHH--HHHHHHHHHT--TCCCEEEEEECGGGCCCHHH-------HHHHHHHHHHHH
T ss_pred HHHHHHHHHCCEEEEEEECCCCCcHHH--HHHHHHHHHc--CCCEEEEEEECccccCcHHH-------HHHHHHHHHHHH
Confidence 888888999999999999998765444 3455555443 678 8999999999753221 001234677788
Q ss_pred HHhCC----cEEEEeccCCCCC------------------HHHHHHHHHHHHhCCC
Q 028595 147 KQIGA----SYYIECSSKTQQN------------------VKAVFDAAIKVVIKPP 180 (207)
Q Consensus 147 ~~~~~----~~~~e~Sa~~~~~------------------i~~~f~~i~~~~~~~~ 180 (207)
+.+++ .+++++||++|.| +.++++.+.+.+..+.
T Consensus 159 ~~~~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp~p~ 214 (405)
T 2c78_A 159 NQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIPTPV 214 (405)
T ss_dssp HHTTSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSCCCC
T ss_pred HHhcccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcCCCC
Confidence 88774 4899999999987 7888888877765443
No 163
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.78 E-value=5.1e-19 Score=145.62 Aligned_cols=157 Identities=13% Similarity=0.018 Sum_probs=102.0
Q ss_pred ceeEEEEecccccceeeeeeeccCCC--CCcc-----------------------------ccCceeeeeeeEEEECCeE
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRS--SIWD-----------------------------YIPTVFDNFSANVVAEGTT 52 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~--~~~~-----------------------------~~~t~~~~~~~~~~~~~~~ 52 (207)
..+|+++|..++| ||||+++|+... +... ..+.++.... ...+....
T Consensus 17 ~~~i~iiG~~d~G-KSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~-~~~~~~~~ 94 (439)
T 3j2k_7 17 HVNVVFIGHVDAG-KSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVG-RAYFETEK 94 (439)
T ss_pred eeEEEEEeCCCCC-HHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEe-EEEEecCC
Confidence 5799999999999 999999995431 1110 1111221111 11222334
Q ss_pred EEEEEEeCCCCccccccccceecCCcEEEEEEeCCChhh-------HHHHHHHHHHHHhhcCCCCc-EEEEeeCCCcccC
Q 028595 53 VNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRAS-------YENVLKKWIPELQHYSPGVP-VVLVGTKLDLRED 124 (207)
Q Consensus 53 ~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s-------~~~~~~~~~~~i~~~~~~~p-iivv~nK~D~~~~ 124 (207)
..+.+|||||+++|......++..+|++|+|+|+++... .+. ...+..+.. .++| +++++||+|+...
T Consensus 95 ~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt--~e~l~~~~~--~~v~~iIvviNK~Dl~~~ 170 (439)
T 3j2k_7 95 KHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQT--REHAMLAKT--AGVKHLIVLINKMDDPTV 170 (439)
T ss_pred eEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchH--HHHHHHHHH--cCCCeEEEEeecCCCccc
Confidence 689999999999998888888999999999999998632 111 122222222 2566 9999999998542
Q ss_pred cccccCCCCCcccCHHHHHHHHHHhCC-----cEEEEeccCCCCCHHHHHH
Q 028595 125 KHYLADHPGLVPVTTAQGEELRKQIGA-----SYYIECSSKTQQNVKAVFD 170 (207)
Q Consensus 125 ~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~e~Sa~~~~~i~~~f~ 170 (207)
... ........++...+++.+++ .+++++||++|.|+.++++
T Consensus 171 ~~~----~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 171 NWS----NERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred chH----HHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence 100 00000133556667766664 3799999999999999655
No 164
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.78 E-value=6.6e-19 Score=131.03 Aligned_cols=161 Identities=11% Similarity=-0.065 Sum_probs=101.6
Q ss_pred cceeEEEEecccccceeeeeeeccCCCCCccccCceeeeee-eEEEECCeEEEEEEEeCCCCcc----------cccccc
Q 028595 3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQED----------YNRLRP 71 (207)
Q Consensus 3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~D~~G~~~----------~~~~~~ 71 (207)
...+|+++|.+++| ||||++++++..+...+.|+.|..+. ..+.+++ .+.+|||||... ++....
T Consensus 25 ~~~~v~lvG~~g~G-KSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~ 100 (210)
T 1pui_A 25 TGIEVAFAGRSNAG-KSSALNTLTNQKSLARTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRALG 100 (210)
T ss_dssp CSEEEEEEECTTSS-HHHHHTTTCCC-------------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHHHH
T ss_pred CCcEEEEECCCCCC-HHHHHHHHhCCCccccccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHHHH
Confidence 35689999999999 99999999988755556677765543 2333333 467999999743 222223
Q ss_pred cee---cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHH
Q 028595 72 LSY---RGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ 148 (207)
Q Consensus 72 ~~~---~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 148 (207)
.++ ..++++++++|+++..+.... .+...+.. .+.|+++++||+|+....+. +.....+..++..
T Consensus 101 ~~~~~~~~~~~~~~v~d~~~~~~~~~~--~~~~~~~~--~~~~~~~v~nK~D~~s~~~~--------~~~~~~~~~~~~~ 168 (210)
T 1pui_A 101 EYLEKRQSLQGLVVLMDIRHPLKDLDQ--QMIEWAVD--SNIAVLVLLTKADKLASGAR--------KAQLNMVREAVLA 168 (210)
T ss_dssp HHHHHCTTEEEEEEEEETTSCCCHHHH--HHHHHHHH--TTCCEEEEEECGGGSCHHHH--------HHHHHHHHHHHGG
T ss_pred HHHHhhhcccEEEEEEECCCCCchhHH--HHHHHHHH--cCCCeEEEEecccCCCchhH--------HHHHHHHHHHHHh
Confidence 344 468999999999987555431 22222222 37899999999998643210 0123566667666
Q ss_pred hC-CcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 028595 149 IG-ASYYIECSSKTQQNVKAVFDAAIKVVIKP 179 (207)
Q Consensus 149 ~~-~~~~~e~Sa~~~~~i~~~f~~i~~~~~~~ 179 (207)
.+ ...++++||+++.|++++++.+.+.+.+.
T Consensus 169 ~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~~ 200 (210)
T 1pui_A 169 FNGDVQVETFSSLKKQGVDKLRQKLDTWFSEM 200 (210)
T ss_dssp GCSCEEEEECBTTTTBSHHHHHHHHHHHHC--
T ss_pred cCCCCceEEEeecCCCCHHHHHHHHHHHHhhc
Confidence 65 23678999999999999999998876543
No 165
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.77 E-value=2.3e-19 Score=147.60 Aligned_cols=155 Identities=14% Similarity=0.021 Sum_probs=102.5
Q ss_pred ceeEEEEecccccceeeeeeeccCCC--CCcc----------ccCceeeee-------------------e-eEEEECCe
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRS--SIWD----------YIPTVFDNF-------------------S-ANVVAEGT 51 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~--~~~~----------~~~t~~~~~-------------------~-~~~~~~~~ 51 (207)
..+|+++|..++| ||||+++|++.. +... ..+|.+..+ . ....+...
T Consensus 24 ~~~i~iiG~~~~G-KSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~~ 102 (434)
T 1zun_B 24 MLRFLTCGNVDDG-KSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFSTA 102 (434)
T ss_dssp EEEEEEECCTTSS-HHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEECS
T ss_pred ceEEEEEECCCCC-HHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeecC
Confidence 4799999999999 999999997553 1111 112221111 0 01112223
Q ss_pred EEEEEEEeCCCCccccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCC
Q 028595 52 TVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADH 131 (207)
Q Consensus 52 ~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~ 131 (207)
...+.+|||||+++|......++..+|++|+|+|+++....+.. .++..+... .-.|+++|+||+|+.+....
T Consensus 103 ~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~--~~l~~~~~~-~~~~iIvviNK~Dl~~~~~~---- 175 (434)
T 1zun_B 103 KRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTR--RHSYIASLL-GIKHIVVAINKMDLNGFDER---- 175 (434)
T ss_dssp SEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHH--HHHHHHHHT-TCCEEEEEEECTTTTTSCHH----
T ss_pred CceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHH--HHHHHHHHc-CCCeEEEEEEcCcCCcccHH----
Confidence 46789999999999988888889999999999999986544332 343343332 12369999999999763210
Q ss_pred CCCcccCHHHHHHHHHHhC--C--cEEEEeccCCCCCHHHH
Q 028595 132 PGLVPVTTAQGEELRKQIG--A--SYYIECSSKTQQNVKAV 168 (207)
Q Consensus 132 ~~~~~v~~~~~~~~~~~~~--~--~~~~e~Sa~~~~~i~~~ 168 (207)
......++.+.+++.++ . .+++++||++|.|++++
T Consensus 176 --~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~ 214 (434)
T 1zun_B 176 --VFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNK 214 (434)
T ss_dssp --HHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSC
T ss_pred --HHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccc
Confidence 00012456777888877 2 38999999999999984
No 166
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.77 E-value=5.6e-19 Score=142.26 Aligned_cols=150 Identities=10% Similarity=-0.049 Sum_probs=105.5
Q ss_pred eEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEEEe
Q 028595 6 KLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFS 85 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d 85 (207)
+|+++|..++| ||||+++|+ ....|+...+ ..+......+.+|||||+++|.......++.+|++|+|+|
T Consensus 23 ~i~iiG~~d~G-KSTL~~~L~------~~giTi~~~~---~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd 92 (370)
T 2elf_A 23 NVAIIGTEKSG-RTSLAANLG------KKGTSSDITM---YNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP 92 (370)
T ss_dssp EEEEEESTTSS-HHHHHHTTS------EEEEESSSEE---EEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC
T ss_pred EEEEECCCCCC-HHHHHHHHH------hCCEEEEeeE---EEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc
Confidence 89999999999 999999998 1112222111 1233334568999999999997777777899999999999
Q ss_pred CCChhhHHHHHHHHHHHHhhcCCCCcE-EEEee-CCCcccCcccccCCCCCcccCHHHHHHHHHHhC--CcEEEE--ecc
Q 028595 86 LVSRASYENVLKKWIPELQHYSPGVPV-VLVGT-KLDLREDKHYLADHPGLVPVTTAQGEELRKQIG--ASYYIE--CSS 159 (207)
Q Consensus 86 ~~~~~s~~~~~~~~~~~i~~~~~~~pi-ivv~n-K~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~--~~~~~e--~Sa 159 (207)
++. ..... ..++..+... ++|. ++++| |+|+ +.+.. ....++++++++.++ ..++++ +||
T Consensus 93 -~~g-~~~qt-~e~~~~~~~~--~i~~~ivvvNNK~Dl-~~~~~--------~~~~~~i~~~l~~~~~~~~~ii~~~~SA 158 (370)
T 2elf_A 93 -PQG-LDAHT-GECIIALDLL--GFKHGIIALTRSDST-HMHAI--------DELKAKLKVITSGTVLQDWECISLNTNK 158 (370)
T ss_dssp -TTC-CCHHH-HHHHHHHHHT--TCCEEEEEECCGGGS-CHHHH--------HHHHHHHHHHTTTSTTTTCEEEECCCCT
T ss_pred -CCC-CcHHH-HHHHHHHHHc--CCCeEEEEEEeccCC-CHHHH--------HHHHHHHHHHHHhcCCCceEEEeccccc
Confidence 543 33333 3455454443 6777 88899 9999 43221 001245666666554 248999 999
Q ss_pred CC---CCCHHHHHHHHHHHHhCC
Q 028595 160 KT---QQNVKAVFDAAIKVVIKP 179 (207)
Q Consensus 160 ~~---~~~i~~~f~~i~~~~~~~ 179 (207)
++ +.|++++++.|.+.+...
T Consensus 159 ~~~~~g~gi~~L~~~l~~~~~~~ 181 (370)
T 2elf_A 159 SAKNPFEGVDELKARINEVAEKI 181 (370)
T ss_dssp TSSSTTTTHHHHHHHHHHHHHHH
T ss_pred ccCcCCCCHHHHHHHHHhhcccc
Confidence 99 999999999999887544
No 167
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.77 E-value=1.8e-19 Score=146.67 Aligned_cols=165 Identities=15% Similarity=0.051 Sum_probs=113.0
Q ss_pred ceeEEEEecccccceeeeeeeccCCC-------CCcc--ccC-----ceeeee-eeEEEECCeEEEEEEEeCCCCccccc
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRS-------SIWD--YIP-----TVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNR 68 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~-------~~~~--~~~-----t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~ 68 (207)
..||+++|..++| ||||+++|++.. +... ... ..+.+. .....++.....+.+|||||+++|..
T Consensus 3 ~~~I~iiG~~~~G-KSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~ 81 (397)
T 1d2e_A 3 HVNVGTIGHVDHG-KTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHADYVK 81 (397)
T ss_dssp EEEEEEESSTTSS-HHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHHHHHH
T ss_pred eEEEEEEeCCCCC-HHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChHHHHH
Confidence 4699999999999 999999998631 1100 000 011111 11122333346788999999999887
Q ss_pred cccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCc-EEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHH
Q 028595 69 LRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVP-VVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRK 147 (207)
Q Consensus 69 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~p-iivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~ 147 (207)
....++..+|++|+|+|+++....+.. .++..+.. .++| +++++||+|+.+.... .....++++++++
T Consensus 82 ~~~~~~~~aD~~ilVvda~~g~~~qt~--e~l~~~~~--~~vp~iivviNK~Dl~~~~~~-------~~~~~~~~~~~l~ 150 (397)
T 1d2e_A 82 NMITGTAPLDGCILVVAANDGPMPQTR--EHLLLARQ--IGVEHVVVYVNKADAVQDSEM-------VELVELEIRELLT 150 (397)
T ss_dssp HHHHTSSCCSEEEEEEETTTCSCHHHH--HHHHHHHH--TTCCCEEEEEECGGGCSCHHH-------HHHHHHHHHHHHH
T ss_pred HHHhhHhhCCEEEEEEECCCCCCHHHH--HHHHHHHH--cCCCeEEEEEECcccCCCHHH-------HHHHHHHHHHHHH
Confidence 778888999999999999986544433 22333333 2678 7899999999753221 0013356778888
Q ss_pred HhCC----cEEEEeccCCCCC----------HHHHHHHHHHHHhCCC
Q 028595 148 QIGA----SYYIECSSKTQQN----------VKAVFDAAIKVVIKPP 180 (207)
Q Consensus 148 ~~~~----~~~~e~Sa~~~~~----------i~~~f~~i~~~~~~~~ 180 (207)
.+++ .+++++||++|.| +.++++.+.+.+..+.
T Consensus 151 ~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p~p~ 197 (397)
T 1d2e_A 151 EFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYIPVPT 197 (397)
T ss_dssp HTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCCCC
T ss_pred HcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhCCCCC
Confidence 8774 4899999999765 8999999988776543
No 168
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.76 E-value=2e-20 Score=155.26 Aligned_cols=156 Identities=15% Similarity=0.187 Sum_probs=106.4
Q ss_pred cceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEE
Q 028595 3 LLAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFV 81 (207)
Q Consensus 3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i 81 (207)
...+|+++|..++| ||||+++|.+..+.....+.++... ...+..++ ..+.+|||||++.|..++..++..+|++|
T Consensus 3 R~~~V~IvGhvd~G-KTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~~--~~i~~iDTPGhe~f~~~~~~~~~~aD~aI 79 (501)
T 1zo1_I 3 RAPVVTIMGHVDHG-KTSLLEYIRSTKVASGEAGGITQHIGAYHVETEN--GMITFLDTPGHAAFTSMRARGAQATDIVV 79 (501)
T ss_dssp CCCCEEEEESTTSS-SHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTTS--SCCCEECCCTTTCCTTSBCSSSBSCSSEE
T ss_pred CCeEEEEECCCCCC-HHHHHHHHHcCCCccccCCCeeEeEEEEEEEECC--EEEEEEECCCcHHHHHHHHHHHhhCCEEE
Confidence 45689999999999 9999999987655443333332221 11222334 46789999999999999999999999999
Q ss_pred EEEeCCC---hhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcc-cccCCCCCcccCHHHHHHHHHHhC-CcEEEE
Q 028595 82 LAFSLVS---RASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKH-YLADHPGLVPVTTAQGEELRKQIG-ASYYIE 156 (207)
Q Consensus 82 ~v~d~~~---~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~e 156 (207)
+|+|+++ +++.+.+ ..+.. .++|+++++||+|+.+.+. ......... ..+++.++ ..++++
T Consensus 80 LVVda~~g~~~qT~e~l-----~~~~~--~~vPiIVviNKiDl~~~~~~~v~~~l~~~-------~~~~~~~~~~~~~v~ 145 (501)
T 1zo1_I 80 LVVAADDGVMPQTIEAI-----QHAKA--AQVPVVVAVNKIDKPEADPDRVKNELSQY-------GILPEEWGGESQFVH 145 (501)
T ss_dssp EEEETTTBSCTTTHHHH-----HHHHH--TTCCEEEEEECSSSSTTCCCCTTCCCCCC-------CCCTTCCSSSCEEEE
T ss_pred EEeecccCccHHHHHHH-----HHHHh--cCceEEEEEEeccccccCHHHHHHHHHHh-------hhhHHHhCCCccEEE
Confidence 9999988 4444433 22222 3789999999999975321 100000000 00112233 238999
Q ss_pred eccCCCCCHHHHHHHHHHH
Q 028595 157 CSSKTQQNVKAVFDAAIKV 175 (207)
Q Consensus 157 ~Sa~~~~~i~~~f~~i~~~ 175 (207)
+||++|.|++++|++++..
T Consensus 146 vSAktG~gI~eLle~I~~~ 164 (501)
T 1zo1_I 146 VSAKAGTGIDELLDAILLQ 164 (501)
T ss_dssp CCTTTCTTCTTHHHHTTTT
T ss_pred EeeeeccCcchhhhhhhhh
Confidence 9999999999999998754
No 169
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.76 E-value=4.5e-19 Score=140.39 Aligned_cols=124 Identities=19% Similarity=0.253 Sum_probs=95.1
Q ss_pred EEEEEEEeCCCCccccccccceecCCcEEEEEEeCC----------ChhhHHHHHHHHHHHHhh-cC-CCCcEEEEeeCC
Q 028595 52 TVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLV----------SRASYENVLKKWIPELQH-YS-PGVPVVLVGTKL 119 (207)
Q Consensus 52 ~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~----------~~~s~~~~~~~~~~~i~~-~~-~~~piivv~nK~ 119 (207)
.+.+++|||+||+.++++|.+|+++++++|+|||++ +.+++.+. ..|+..+.. .. +++|++|+|||+
T Consensus 160 ~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es-~~~~~~i~~~~~~~~~piiLv~NK~ 238 (340)
T 4fid_A 160 DIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTES-IAVFKDIMTNEFLKGAVKLIFLNKM 238 (340)
T ss_dssp SCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHH-HHHHHHHHHCGGGTTSEEEEEEECH
T ss_pred eeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHH-HHHHHHHhhhhccCCCeEEEEEECc
Confidence 488999999999999999999999999999999999 78888888 455555433 22 689999999999
Q ss_pred CcccCccc-------ccCCCCCcccCHHHHHHHHHH-h-------------------------CCcEEEEeccCCCCCHH
Q 028595 120 DLREDKHY-------LADHPGLVPVTTAQGEELRKQ-I-------------------------GASYYIECSSKTQQNVK 166 (207)
Q Consensus 120 D~~~~~~~-------~~~~~~~~~v~~~~~~~~~~~-~-------------------------~~~~~~e~Sa~~~~~i~ 166 (207)
|+.+.+.. +.+..+. ...+++.+|+.. + +...+++|||+++.||+
T Consensus 239 DL~~eki~~~~l~~~fp~y~g~--~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~ 316 (340)
T 4fid_A 239 DLFEEKLTKVPLNTIFPEYTGG--DNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIK 316 (340)
T ss_dssp HHHHHHHHHSCGGGTCTTCCCT--TCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHH
T ss_pred hhhhhhcCcchHHHhhhhhcCC--CCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHH
Confidence 98653221 1111111 256677665543 3 12368899999999999
Q ss_pred HHHHHHHHHHhC
Q 028595 167 AVFDAAIKVVIK 178 (207)
Q Consensus 167 ~~f~~i~~~~~~ 178 (207)
.+|..+.+.++.
T Consensus 317 ~vF~~v~~~Il~ 328 (340)
T 4fid_A 317 RVFMLAVDVIMK 328 (340)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999886
No 170
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.75 E-value=1.5e-19 Score=141.64 Aligned_cols=159 Identities=18% Similarity=0.092 Sum_probs=103.1
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCCcc------ccCce-----------------e---eeee--------------
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSIWD------YIPTV-----------------F---DNFS-------------- 43 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~------~~~t~-----------------~---~~~~-------------- 43 (207)
..+|+++|.+++| ||||+|+|++..+.+. ..|+. | .++.
T Consensus 26 ~~~i~vvG~~~~G-KSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i~ 104 (299)
T 2aka_B 26 LPQIAVVGGQSAG-KSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 104 (299)
T ss_dssp CCEEEEEEBTTSC-HHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHC
T ss_pred CCeEEEEeCCCCC-HHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHhc
Confidence 4699999999999 9999999999886422 22320 0 0000
Q ss_pred ----------eEEEECC-eEEEEEEEeCCCCc-------------cccccccceecCCcEEE-EEEeCCChhhHHHHHHH
Q 028595 44 ----------ANVVAEG-TTVNLGLWDTAGQE-------------DYNRLRPLSYRGADVFV-LAFSLVSRASYENVLKK 98 (207)
Q Consensus 44 ----------~~~~~~~-~~~~l~i~D~~G~~-------------~~~~~~~~~~~~~d~~i-~v~d~~~~~s~~~~~~~ 98 (207)
..+.+.+ ....+.+|||||.. .+..+...|++.++.++ +|+|.++..+..+. ..
T Consensus 105 g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~-~~ 183 (299)
T 2aka_B 105 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA-LK 183 (299)
T ss_dssp SSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHH-HH
T ss_pred ccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHH-HH
Confidence 0000000 12578999999964 23455667888888776 79999886555443 34
Q ss_pred HHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHH--hCCcEEEEeccCCCCCHHHHHHHHHHHH
Q 028595 99 WIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ--IGASYYIECSSKTQQNVKAVFDAAIKVV 176 (207)
Q Consensus 99 ~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~~~~~~~e~Sa~~~~~i~~~f~~i~~~~ 176 (207)
++..+.. .+.|+++|+||+|+.+.... ..+.++..... .+..+++++||++|.|++++|+.+.+..
T Consensus 184 ~~~~~~~--~~~~~i~V~NK~Dl~~~~~~----------~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~~ 251 (299)
T 2aka_B 184 IAKEVDP--QGQRTIGVITKLDLMDEGTD----------ARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAER 251 (299)
T ss_dssp HHHHHCT--TCSSEEEEEECGGGSCTTCC----------CHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHHH
T ss_pred HHHHhCC--CCCeEEEEEEccccCCCCch----------HHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHHH
Confidence 5555543 37899999999999765431 22222210001 1334678899999999999999988743
No 171
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.75 E-value=3.9e-19 Score=146.29 Aligned_cols=157 Identities=14% Similarity=0.049 Sum_probs=104.5
Q ss_pred ceeEEEEecccccceeeeeeeccCC--CCCccc-----------------------------cCceeeeeeeEEEECCeE
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGR--SSIWDY-----------------------------IPTVFDNFSANVVAEGTT 52 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~--~~~~~~-----------------------------~~t~~~~~~~~~~~~~~~ 52 (207)
..+|+++|..++| ||||+++|+.. .+...+ .+.++.... ...++...
T Consensus 6 ~~~I~iiG~~~~G-KSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~-~~~~~~~~ 83 (435)
T 1jny_A 6 HLNLIVIGHVDHG-KSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLT-FMRFETKK 83 (435)
T ss_dssp EEEEEEEESTTSS-HHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC------------CEEECSS
T ss_pred EEEEEEEeCCCCC-HHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEee-EEEEecCC
Confidence 4799999999999 99999999864 222111 011111111 11223334
Q ss_pred EEEEEEeCCCCccccccccceecCCcEEEEEEeCCChhhHHHHH------HHHHHHHhhcCCCCcEEEEeeCCCcccCc-
Q 028595 53 VNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVL------KKWIPELQHYSPGVPVVLVGTKLDLREDK- 125 (207)
Q Consensus 53 ~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~------~~~~~~i~~~~~~~piivv~nK~D~~~~~- 125 (207)
+.+.+|||||+++|......++..+|++|+|+|+++ .+++... ..++..+... .-.|+++++||+|+.+..
T Consensus 84 ~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~-~~~~iivviNK~Dl~~~~~ 161 (435)
T 1jny_A 84 YFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTM-GLDQLIVAVNKMDLTEPPY 161 (435)
T ss_dssp CEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHT-TCTTCEEEEECGGGSSSTT
T ss_pred eEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHc-CCCeEEEEEEcccCCCccc
Confidence 679999999999998888889999999999999999 6666431 1222222221 124699999999997631
Q ss_pred -ccccCCCCCcccCHHHHHHHHHHhCC----cEEEEeccCCCCCHHHHHH
Q 028595 126 -HYLADHPGLVPVTTAQGEELRKQIGA----SYYIECSSKTQQNVKAVFD 170 (207)
Q Consensus 126 -~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~e~Sa~~~~~i~~~f~ 170 (207)
+. ......++++.+++.+++ .+++++||++|.|+.+++.
T Consensus 162 ~~~------~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~ 205 (435)
T 1jny_A 162 DEK------RYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE 205 (435)
T ss_dssp CHH------HHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred cHH------HHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence 10 000134677888888773 4799999999999986543
No 172
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.74 E-value=6.1e-19 Score=156.56 Aligned_cols=165 Identities=13% Similarity=0.062 Sum_probs=112.7
Q ss_pred ceeEEEEecccccceeeeeeeccCCC-------CCc-------cccCceeeeee-eEEEECCeEEEEEEEeCCCCccccc
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRS-------SIW-------DYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQEDYNR 68 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~-------~~~-------~~~~t~~~~~~-~~~~~~~~~~~l~i~D~~G~~~~~~ 68 (207)
..+|+++|..++| ||||+++|++.. +.. ....+.|.++. ..+.++.....+.||||||+++|..
T Consensus 296 ~lnIvIIGhvDvG-KSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHedF~~ 374 (1289)
T 3avx_A 296 HVNVGTIGHVDHG-KTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHADYVK 374 (1289)
T ss_dssp EEEEEEEESTTSS-HHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHHHHHH
T ss_pred eeEEEEEcCCCCC-HHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChHHHHH
Confidence 4789999999999 999999998631 000 00122232221 1233444457789999999999988
Q ss_pred cccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCc-EEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHH
Q 028595 69 LRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVP-VVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRK 147 (207)
Q Consensus 69 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~p-iivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~ 147 (207)
....++..+|++|+|+|+++....+.. .++..+... ++| +++++||+|+.+..... ....++++.+++
T Consensus 375 ~mi~gas~AD~aILVVDAtdGv~~QTr--EhL~ll~~l--gIP~IIVVINKiDLv~d~e~l-------e~i~eEi~elLk 443 (1289)
T 3avx_A 375 NMITGAAQMDGAILVVAATDGPMPQTR--EHILLGRQV--GVPYIIVFLNKCDMVDDEELL-------ELVEMEVRELLS 443 (1289)
T ss_dssp HHHHTSCCCSEEEEEEETTTCSCTTHH--HHHHHHHHH--TCSCEEEEEECCTTCCCHHHH-------HHHHHHHHHHHH
T ss_pred HHHHHHhhCCEEEEEEcCCccCcHHHH--HHHHHHHHc--CCCeEEEEEeecccccchhhH-------HHHHHHHHHHHH
Confidence 878889999999999999986444432 333444332 688 89999999997533210 013356778888
Q ss_pred HhCC----cEEEEeccCCC--------CCHHHHHHHHHHHHhCCC
Q 028595 148 QIGA----SYYIECSSKTQ--------QNVKAVFDAAIKVVIKPP 180 (207)
Q Consensus 148 ~~~~----~~~~e~Sa~~~--------~~i~~~f~~i~~~~~~~~ 180 (207)
.+++ .+++++||++| .|+.++++.+.+.+..+.
T Consensus 444 ~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~Ip~P~ 488 (1289)
T 3avx_A 444 QYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYIPEPE 488 (1289)
T ss_dssp HTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTSCCCC
T ss_pred hccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhcCCCc
Confidence 8774 48999999999 468999999888776443
No 173
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.74 E-value=1.1e-18 Score=148.65 Aligned_cols=156 Identities=11% Similarity=-0.003 Sum_probs=100.8
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCCcccc---------C--------------------ceeeee-eeEEEECCeEE
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYI---------P--------------------TVFDNF-SANVVAEGTTV 53 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~---------~--------------------t~~~~~-~~~~~~~~~~~ 53 (207)
.+||+++|..++| ||||+++|++........ . ..|.+. .....++...+
T Consensus 167 ~lkV~ivG~~n~G-KSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~~~ 245 (611)
T 3izq_1 167 HLSFVVLGHVDAG-KSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRA 245 (611)
T ss_dssp CCEEEEECCSSSC-HHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECSSC
T ss_pred ceEEEEEECCCCC-HHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecCCc
Confidence 5799999999999 999999998663211100 0 011111 11112222346
Q ss_pred EEEEEeCCCCccccccccceecCCcEEEEEEeCCChhhH------HHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCccc
Q 028595 54 NLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASY------ENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHY 127 (207)
Q Consensus 54 ~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~------~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~ 127 (207)
.+.||||||+++|......++..+|++|+|+|+++.... ... ...+..+... .-.|+++|+||+|+.+....
T Consensus 246 ~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt-~e~l~~~~~l-gi~~iIVVvNKiDl~~~~~~ 323 (611)
T 3izq_1 246 NFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQT-KEHMLLASSL-GIHNLIIAMNKMDNVDWSQQ 323 (611)
T ss_dssp EEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHH-HHHHHHHHTT-TCCEEEEEEECTTTTTTCHH
T ss_pred eEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHH-HHHHHHHHHc-CCCeEEEEEecccccchhHH
Confidence 789999999999998888999999999999999874210 011 1122222221 23459999999999763221
Q ss_pred ccCCCCCcccCHHHHHHHHHHhCC----cEEEEeccCCCCCHHHH
Q 028595 128 LADHPGLVPVTTAQGEELRKQIGA----SYYIECSSKTQQNVKAV 168 (207)
Q Consensus 128 ~~~~~~~~~v~~~~~~~~~~~~~~----~~~~e~Sa~~~~~i~~~ 168 (207)
......+++..++..+++ .+++++||++|.|+.++
T Consensus 324 ------~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el 362 (611)
T 3izq_1 324 ------RFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI 362 (611)
T ss_dssp ------HHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred ------HHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence 000023455566666654 38999999999999876
No 174
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.73 E-value=4.8e-18 Score=146.23 Aligned_cols=115 Identities=17% Similarity=0.081 Sum_probs=81.9
Q ss_pred cceeEEEEecccccceeeeeeeccCCCCCc-------------cccC---ceeeee-eeEEEECCeEEEEEEEeCCCCcc
Q 028595 3 LLAKLACLFATQVTSFLLYVLSVSGRSSIW-------------DYIP---TVFDNF-SANVVAEGTTVNLGLWDTAGQED 65 (207)
Q Consensus 3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~~-------------~~~~---t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~ 65 (207)
...+|+++|..++| ||||+++|++..... ++.+ ..+..+ .....+....+.++||||||++.
T Consensus 8 ~~~~i~IiG~~gaG-KTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~~ 86 (665)
T 2dy1_A 8 MIRTVALVGHAGSG-KTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGD 86 (665)
T ss_dssp CEEEEEEEESTTSS-HHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGG
T ss_pred CCcEEEEECCCCCh-HHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCccc
Confidence 45789999999999 999999998332110 1110 001122 22233333357899999999999
Q ss_pred ccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcc
Q 028595 66 YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLR 122 (207)
Q Consensus 66 ~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~ 122 (207)
+...+..+++.+|++++|+|.++....+.. .++..+.. .++|+++++||+|+.
T Consensus 87 f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~--~~~~~~~~--~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 87 FVGEIRGALEAADAALVAVSAEAGVQVGTE--RAWTVAER--LGLPRMVVVTKLDKG 139 (665)
T ss_dssp GHHHHHHHHHHCSEEEEEEETTTCSCHHHH--HHHHHHHH--TTCCEEEEEECGGGC
T ss_pred hHHHHHHHHhhcCcEEEEEcCCcccchhHH--HHHHHHHH--ccCCEEEEecCCchh
Confidence 988888999999999999999886555543 44444444 379999999999986
No 175
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.72 E-value=4.9e-19 Score=139.00 Aligned_cols=163 Identities=10% Similarity=-0.005 Sum_probs=88.9
Q ss_pred cceeEEEEecccccceeeeeeeccCC-CCCccc--------cCceeeee-eeEEEECCeEEEEEEEeCCCC-------cc
Q 028595 3 LLAKLACLFATQVTSFLLYVLSVSGR-SSIWDY--------IPTVFDNF-SANVVAEGTTVNLGLWDTAGQ-------ED 65 (207)
Q Consensus 3 ~~~ki~iiG~~~~GgKssli~~l~~~-~~~~~~--------~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~-------~~ 65 (207)
..++|+++|.+++| ||||++++.+. .+...+ .++..... ...+..++....+.+||++|+ +.
T Consensus 17 ~~~~I~lvG~nG~G-KSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~ 95 (301)
T 2qnr_A 17 FEFTLMVVGESGLG-KSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDC 95 (301)
T ss_dssp -CEEEEEEEETTSS-HHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------
T ss_pred CCEEEEEECCCCCC-HHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHH
Confidence 45799999999999 99999998875 333332 12222111 112222445678999999998 55
Q ss_pred cccccc-------ceecC-------------CcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCc
Q 028595 66 YNRLRP-------LSYRG-------------ADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK 125 (207)
Q Consensus 66 ~~~~~~-------~~~~~-------------~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~ 125 (207)
+..+.. .++.. +++++++.+.+. .+++.....+ +....++.|+++|+||.|+...+
T Consensus 96 ~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~-~~Ld~~~~~~---l~~l~~~~~iilV~~K~Dl~~~~ 171 (301)
T 2qnr_A 96 FKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFG-HGLKPLDVAF---MKAIHNKVNIVPVIAKADTLTLK 171 (301)
T ss_dssp CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSS-SSCCHHHHHH---HHHHTTTSCEEEEECCGGGSCHH
T ss_pred HHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcc-cCCCHHHHHH---HHHHHhcCCEEEEEEeCCCCCHH
Confidence 555443 34332 233444444322 2333331123 33333578999999999997543
Q ss_pred ccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCCCCCHHHHHHHHHHHHhCCC
Q 028595 126 HYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVIKPP 180 (207)
Q Consensus 126 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i~~~~~~~~ 180 (207)
+. .+..++++++++.+++ +++++||+++ |++++|..+++.+....
T Consensus 172 e~--------~~~~~~~~~~~~~~~~-~~~e~Sa~~~-~v~e~f~~l~~~i~~~~ 216 (301)
T 2qnr_A 172 ER--------ERLKKRILDEIEEHNI-KIYHLPDAES-DEDEDFKEQTRLLKASI 216 (301)
T ss_dssp HH--------HHHHHHHHHHHHHTTC-CCCCCC----------CHHHHHHHHTTC
T ss_pred HH--------HHHHHHHHHHHHHcCC-eEEecCCccc-cccHHHHHHHHHhhcCC
Confidence 31 1135688899999998 9999999999 99999999999987543
No 176
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.72 E-value=6.8e-18 Score=139.64 Aligned_cols=151 Identities=11% Similarity=-0.025 Sum_probs=102.2
Q ss_pred ceeEEEEecccccceeeeeeeccCC--CCCcc-------------------------------ccCceeeeeeeEEEECC
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGR--SSIWD-------------------------------YIPTVFDNFSANVVAEG 50 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~--~~~~~-------------------------------~~~t~~~~~~~~~~~~~ 50 (207)
..+|+++|..++| ||||+++|++. .+... .-.|+...+ ..++.
T Consensus 7 ~~~i~iiG~~~~G-KSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~---~~~~~ 82 (458)
T 1f60_A 7 HINVVVIGHVDSG-KSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIAL---WKFET 82 (458)
T ss_dssp EEEEEEEECTTSC-HHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSC---EEEEC
T ss_pred eeEEEEEcCCCCC-HHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEE---EEEec
Confidence 5799999999999 99999999854 22110 001211111 12233
Q ss_pred eEEEEEEEeCCCCccccccccceecCCcEEEEEEeCCChhh---H----HHHHHHHHHHHhhcCCCCc-EEEEeeCCCcc
Q 028595 51 TTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRAS---Y----ENVLKKWIPELQHYSPGVP-VVLVGTKLDLR 122 (207)
Q Consensus 51 ~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s---~----~~~~~~~~~~i~~~~~~~p-iivv~nK~D~~ 122 (207)
....+.+|||||+++|......++..+|++|+|+|+++... | +.. .++..+.. .++| +++++||+|+.
T Consensus 83 ~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~--~~~~~~~~--~~v~~iivviNK~Dl~ 158 (458)
T 1f60_A 83 PKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTR--EHALLAFT--LGVRQLIVAVNKMDSV 158 (458)
T ss_dssp SSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHH--HHHHHHHH--TTCCEEEEEEECGGGG
T ss_pred CCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHH--HHHHHHHH--cCCCeEEEEEEccccc
Confidence 34679999999999998888888999999999999998632 2 222 22223322 2565 99999999997
Q ss_pred cCcccccCCCCCcccCHHHHHHHHHHhCC----cEEEEeccCCCCCHHHH
Q 028595 123 EDKHYLADHPGLVPVTTAQGEELRKQIGA----SYYIECSSKTQQNVKAV 168 (207)
Q Consensus 123 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~----~~~~e~Sa~~~~~i~~~ 168 (207)
+.... ......++++.+++.+++ .+++++||++|.|+.++
T Consensus 159 ~~~~~------~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 159 KWDES------RFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp TTCHH------HHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred cCCHH------HHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence 42110 000134567777787774 48999999999998743
No 177
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.72 E-value=1.5e-18 Score=143.85 Aligned_cols=153 Identities=18% Similarity=0.067 Sum_probs=89.6
Q ss_pred ceeEEEEecccccceeeeeeeccC--CCCCc-------------------------------cccCceeeeeeeEEEECC
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSG--RSSIW-------------------------------DYIPTVFDNFSANVVAEG 50 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~--~~~~~-------------------------------~~~~t~~~~~~~~~~~~~ 50 (207)
..+|+++|..++| ||||+++|+. +.+.. ..-.|+...+ ..+..++
T Consensus 43 ~~~i~iiG~vd~G-KSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~-~~~~~~~ 120 (467)
T 1r5b_A 43 HVNIVFIGHVDAG-KSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGR-AYFETEH 120 (467)
T ss_dssp EEEEEEEECGGGT-HHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------C-CEEECSS
T ss_pred eeEEEEEECCCCC-HHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeee-EEEecCC
Confidence 4689999999999 9999999864 22210 0011211111 1222333
Q ss_pred eEEEEEEEeCCCCccccccccceecCCcEEEEEEeCCChh---hHHHH--HHHHHHHHhhcCCCCc-EEEEeeCCCcccC
Q 028595 51 TTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA---SYENV--LKKWIPELQHYSPGVP-VVLVGTKLDLRED 124 (207)
Q Consensus 51 ~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~---s~~~~--~~~~~~~i~~~~~~~p-iivv~nK~D~~~~ 124 (207)
..+.||||||+++|......++..+|++|+|+|+++.. +|+.. ....+..+.. .++| +++++||+|+.+.
T Consensus 121 --~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~--~~vp~iivviNK~Dl~~~ 196 (467)
T 1r5b_A 121 --RRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLART--QGINHLVVVINKMDEPSV 196 (467)
T ss_dssp --EEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHH--TTCSSEEEEEECTTSTTC
T ss_pred --eEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHH--cCCCEEEEEEECccCCCc
Confidence 67899999999999988888899999999999999863 22111 0111222222 3677 9999999999642
Q ss_pred c---ccccCCCCCcccCHHHHHHHHHHh-CC-----cEEEEeccCCCCCHHHHH
Q 028595 125 K---HYLADHPGLVPVTTAQGEELRKQI-GA-----SYYIECSSKTQQNVKAVF 169 (207)
Q Consensus 125 ~---~~~~~~~~~~~v~~~~~~~~~~~~-~~-----~~~~e~Sa~~~~~i~~~f 169 (207)
. .. .....+++..++..+ ++ .+++++||++|.|+.++|
T Consensus 197 ~~~~~~-------~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 197 QWSEER-------YKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp SSCHHH-------HHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred cccHHH-------HHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence 1 10 001334677777776 53 369999999999998765
No 178
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.70 E-value=1.9e-17 Score=127.60 Aligned_cols=117 Identities=15% Similarity=0.075 Sum_probs=83.9
Q ss_pred ceeEEEEecccccceeeeeeeccCCCC--CccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceec------
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSS--IWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYR------ 75 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~------ 75 (207)
.++|+++|..++| ||||+|+|++... ...+.++........+..++ ..+.||||||++.+......+++
T Consensus 36 ~~~I~lvG~~g~G-KSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~l~liDTpG~~~~~~~~~~~~~~i~~~l 112 (262)
T 3def_A 36 SMTVLVLGKGGVG-KSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMGG--FTINIIDTPGLVEAGYVNHQALELIKGFL 112 (262)
T ss_dssp EEEEEEEECTTSS-HHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred CcEEEEECCCCCC-HHHHHHHHhCCCCcccCCCCCcceeeEEEEEEECC--eeEEEEECCCCCCcccchHHHHHHHHHHH
Confidence 5799999999999 9999999998874 33344443333344555566 47899999999988776665554
Q ss_pred ---CCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC-C--CCcEEEEeeCCCcccC
Q 028595 76 ---GADVFVLAFSLVSRASYENVLKKWIPELQHYS-P--GVPVVLVGTKLDLRED 124 (207)
Q Consensus 76 ---~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~--~~piivv~nK~D~~~~ 124 (207)
++|++++|+++++.. +......|+..+.... + ..|+++|+||+|+.+.
T Consensus 113 ~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~ 166 (262)
T 3def_A 113 VNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPP 166 (262)
T ss_dssp TTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCS
T ss_pred hcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCC
Confidence 789999999987654 3332235666665433 2 2499999999998644
No 179
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.70 E-value=9.1e-17 Score=130.79 Aligned_cols=160 Identities=14% Similarity=0.086 Sum_probs=111.3
Q ss_pred eeEEEEecccccceeeeeeeccCCCCC-ccccCceeeeeeeEEEECCeEEEEEEEeCCCCcc----ccccccce---ecC
Q 028595 5 AKLACLFATQVTSFLLYVLSVSGRSSI-WDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQED----YNRLRPLS---YRG 76 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~----~~~~~~~~---~~~ 76 (207)
..|+++|.+++| ||||++++++.... ..+..|........+..++ ...+.+||+||... +..+...+ ...
T Consensus 158 ~~VgLVG~~gAG-KSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~~-~~~~~l~DtpGli~~a~~~~~L~~~fl~~~er 235 (416)
T 1udx_A 158 ADVGLVGYPNAG-KSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVSE-EERFTLADIPGIIEGASEGKGLGLEFLRHIAR 235 (416)
T ss_dssp CSEEEECCGGGC-HHHHHHHHCSSCCEECCCTTCSSCCEEEEEECSS-SCEEEEEECCCCCCCGGGSCCSCHHHHHHHTS
T ss_pred CEEEEECCCCCc-HHHHHHHHHcCCccccCcccceecceeeEEEecC-cceEEEEeccccccchhhhhhhhHHHHHHHHH
Confidence 468999999999 99999999877431 2222221111122333343 24578999999743 22333333 346
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHHhhcC---CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcE
Q 028595 77 ADVFVLAFSLVSRASYENVLKKWIPELQHYS---PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASY 153 (207)
Q Consensus 77 ~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~---~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 153 (207)
++.++.++|++ ...+.++ ..+..++..+. ...|.++++||.|+... . ..++..++++..+. +
T Consensus 236 a~~lL~vvDls-~~~~~~l-s~g~~el~~la~aL~~~P~ILVlNKlDl~~~-~-----------~~~~l~~~l~~~g~-~ 300 (416)
T 1udx_A 236 TRVLLYVLDAA-DEPLKTL-ETLRKEVGAYDPALLRRPSLVALNKVDLLEE-E-----------AVKALADALAREGL-A 300 (416)
T ss_dssp SSEEEEEEETT-SCHHHHH-HHHHHHHHHHCHHHHHSCEEEEEECCTTSCH-H-----------HHHHHHHHHHTTTS-C
T ss_pred HHhhhEEeCCc-cCCHHHH-HHHHHHHHHHhHHhhcCCEEEEEECCChhhH-H-----------HHHHHHHHHHhcCC-e
Confidence 99999999998 5666666 56666655544 26899999999998654 2 34555566666676 8
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHhCCCc
Q 028595 154 YIECSSKTQQNVKAVFDAAIKVVIKPPQ 181 (207)
Q Consensus 154 ~~e~Sa~~~~~i~~~f~~i~~~~~~~~~ 181 (207)
++.+||++++|++++++++.+.+...+.
T Consensus 301 vi~iSA~~g~gi~eL~~~i~~~l~~~~~ 328 (416)
T 1udx_A 301 VLPVSALTGAGLPALKEALHALVRSTPP 328 (416)
T ss_dssp EEECCTTTCTTHHHHHHHHHHHHHTSCC
T ss_pred EEEEECCCccCHHHHHHHHHHHHHhccc
Confidence 9999999999999999999999986654
No 180
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.70 E-value=3.7e-17 Score=137.12 Aligned_cols=117 Identities=13% Similarity=0.030 Sum_probs=79.7
Q ss_pred cceeEEEEecccccceeeeeeeccCCC--CCc---------------c---ccCceeeee-eeEEEECCeEEEEEEEeCC
Q 028595 3 LLAKLACLFATQVTSFLLYVLSVSGRS--SIW---------------D---YIPTVFDNF-SANVVAEGTTVNLGLWDTA 61 (207)
Q Consensus 3 ~~~ki~iiG~~~~GgKssli~~l~~~~--~~~---------------~---~~~t~~~~~-~~~~~~~~~~~~l~i~D~~ 61 (207)
...+|+++|..++| ||||+++|+... +.. + ..++.|.+. .....++...+.+.|||||
T Consensus 12 ~~~~I~IiG~~~aG-KTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTP 90 (529)
T 2h5e_A 12 KRRTFAIISHPDAG-KTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTP 90 (529)
T ss_dssp TEEEEEEEECTTSS-HHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCC
T ss_pred CCCEEEEECCCCCh-HHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECC
Confidence 46799999999999 999999998531 100 0 001112111 1122222234789999999
Q ss_pred CCccccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccC
Q 028595 62 GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED 124 (207)
Q Consensus 62 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~ 124 (207)
|++.|......+++.+|++|+|+|+++....+. ..++..+.. .++|+++++||+|+...
T Consensus 91 G~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t--~~~~~~~~~--~~ipiivviNK~Dl~~~ 149 (529)
T 2h5e_A 91 GHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRT--RKLMEVTRL--RDTPILTFMNKLDRDIR 149 (529)
T ss_dssp CSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHH--HHHHHHHTT--TTCCEEEEEECTTSCCS
T ss_pred CChhHHHHHHHHHHHCCEEEEEEeCCccchHHH--HHHHHHHHH--cCCCEEEEEcCcCCccc
Confidence 999998888889999999999999998654433 233444433 37999999999998653
No 181
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.69 E-value=1.7e-17 Score=135.17 Aligned_cols=160 Identities=11% Similarity=0.020 Sum_probs=88.3
Q ss_pred cceeEEEEecccccceeeeeeeccCCCCC-ccc-------cCceeeee-eeEEEECCeEEEEEEEeCCCCcccc------
Q 028595 3 LLAKLACLFATQVTSFLLYVLSVSGRSSI-WDY-------IPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYN------ 67 (207)
Q Consensus 3 ~~~ki~iiG~~~~GgKssli~~l~~~~~~-~~~-------~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~------ 67 (207)
+.++|+++|.+++| ||||+++|++..+. ..+ .+|.+... ...+..++....+.+||++|...+.
T Consensus 30 vsf~I~lvG~sGaG-KSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~ 108 (418)
T 2qag_C 30 FEFTLMVVGESGLG-KSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW 108 (418)
T ss_dssp CCEEEEEECCTTSS-HHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------C
T ss_pred CCEEEEEECCCCCc-HHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhH
Confidence 35789999999999 99999999987653 211 22332211 1122223444689999999976531
Q ss_pred -c------------------cccceecCCcEEEEEEeCCCh-hhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCccc
Q 028595 68 -R------------------LRPLSYRGADVFVLAFSLVSR-ASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHY 127 (207)
Q Consensus 68 -~------------------~~~~~~~~~d~~i~v~d~~~~-~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~ 127 (207)
. +.+.++.++++.+++|..+.. .++......|+..+. .++|+++|+||+|+...+++
T Consensus 109 ~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~---~~v~iIlVinK~Dll~~~ev 185 (418)
T 2qag_C 109 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH---EKVNIIPLIAKADTLTPEEC 185 (418)
T ss_dssp HHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT---TTSEEEEEEESTTSSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh---ccCcEEEEEEcccCccHHHH
Confidence 1 234456677776677766654 355554235666664 37999999999998765442
Q ss_pred ccCCCCCcccCH--HHHHHHHHHhCCcEEEEeccCCCCCHHHHHHHHHHHHh
Q 028595 128 LADHPGLVPVTT--AQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVI 177 (207)
Q Consensus 128 ~~~~~~~~~v~~--~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i~~~~~ 177 (207)
.. +.+..++..+++ +++++|+.++.+++++|..+...++
T Consensus 186 ----------~~~k~~i~~~~~~~~i-~~~~~sa~~~~~v~~~~~~l~~~iP 226 (418)
T 2qag_C 186 ----------QQFKKQIMKEIQEHKI-KIYEFPETDDEEENKLVKKIKDRLP 226 (418)
T ss_dssp ----------HHHHHHHHHHHHHHTC-CCCCCC-----------------CC
T ss_pred ----------HHHHHHHHHHHHHcCC-eEEeCCCCCCcCHHHHHHHHHhhCC
Confidence 33 678888888988 8999999999999999988887664
No 182
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.69 E-value=3e-18 Score=145.54 Aligned_cols=148 Identities=16% Similarity=0.062 Sum_probs=82.1
Q ss_pred ceeEEEEecccccceeeeeeeccCCC--CC-----------------------------ccccCceeeeeeeEEEECCeE
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRS--SI-----------------------------WDYIPTVFDNFSANVVAEGTT 52 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~--~~-----------------------------~~~~~t~~~~~~~~~~~~~~~ 52 (207)
..+|+++|..++| ||||+++|+... +. .+..+.++... ....+....
T Consensus 177 ~~~I~iiG~~d~G-KSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~-~~~~~~~~~ 254 (592)
T 3mca_A 177 VVHLVVTGHVDSG-KSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDV-ASTTFESDK 254 (592)
T ss_dssp EEEEEEECCSSST-HHHHHHHHHHHHHCC---------------------------------------------------
T ss_pred ccEEEEEcCCCCC-HHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEe-eEEEEEeCC
Confidence 4689999999999 999999996321 00 00011111111 111122234
Q ss_pred EEEEEEeCCCCccccccccceecCCcEEEEEEeCCCh----------hhHHHHHHHHHHHHhhcCCCCc-EEEEeeCCCc
Q 028595 53 VNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSR----------ASYENVLKKWIPELQHYSPGVP-VVLVGTKLDL 121 (207)
Q Consensus 53 ~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~~~i~~~~~~~p-iivv~nK~D~ 121 (207)
..+.||||||++.|......++..+|++|+|+|+++. .+.+.+ ..+... ++| +++|+||+|+
T Consensus 255 ~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l-----~~~~~l--gip~iIvviNKiDl 327 (592)
T 3mca_A 255 KIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHA-----YLLRAL--GISEIVVSVNKLDL 327 (592)
T ss_dssp ----CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHH-----HHHHHS--SCCCEEEEEECGGG
T ss_pred eEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHH-----HHHHHc--CCCeEEEEEecccc
Confidence 6789999999999998888999999999999999853 333332 222221 565 9999999999
Q ss_pred ccCcccccCCCCCcccCHHHHHHHH-HHhCC----cEEEEeccCCCCCHH
Q 028595 122 REDKHYLADHPGLVPVTTAQGEELR-KQIGA----SYYIECSSKTQQNVK 166 (207)
Q Consensus 122 ~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~----~~~~e~Sa~~~~~i~ 166 (207)
.+.... ......+++..+. ..+++ .+++++||++|.|+.
T Consensus 328 ~~~~~~------~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~ 371 (592)
T 3mca_A 328 MSWSED------RFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI 371 (592)
T ss_dssp GTTCHH------HHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred ccccHH------HHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence 752210 0000223444454 44555 279999999999998
No 183
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.67 E-value=4.6e-17 Score=140.68 Aligned_cols=172 Identities=12% Similarity=0.095 Sum_probs=108.9
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCCc-cccCcee--------eeeeeEEEE-CCe----------------------
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSIW-DYIPTVF--------DNFSANVVA-EGT---------------------- 51 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~-~~~~t~~--------~~~~~~~~~-~~~---------------------- 51 (207)
.++|+++|.+++| ||||+|+|++..+.+ ...|++. ......... ++.
T Consensus 69 ~~~V~VvG~~naG-KSSLlNaLlg~~~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~~ 147 (695)
T 2j69_A 69 VFRLLVLGDMKRG-KSTFLNALIGENLLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEAK 147 (695)
T ss_dssp CEEEEEECCTTSC-HHHHHHHHHTSSCSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHHH
T ss_pred CCEEEEECCCCCC-HHHHHHHHhCCCCCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHHH
Confidence 5799999999999 999999999887543 2333331 000001110 100
Q ss_pred -----------------------E--EEEEEEeCCCCcc---ccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHH
Q 028595 52 -----------------------T--VNLGLWDTAGQED---YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPEL 103 (207)
Q Consensus 52 -----------------------~--~~l~i~D~~G~~~---~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i 103 (207)
. ..+.||||||... .......+++++|++++|+|.++..+..+. ..|...+
T Consensus 148 ~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~-~~l~~~l 226 (695)
T 2j69_A 148 KLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGER-RYLENYI 226 (695)
T ss_dssp HHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHH-HHHHHHT
T ss_pred HHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHH-HHHHHHH
Confidence 0 3588999999554 334566788999999999999998888776 5565555
Q ss_pred hhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHH-----HHHHhC-------CcEEEEeccC-----------
Q 028595 104 QHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEE-----LRKQIG-------ASYYIECSSK----------- 160 (207)
Q Consensus 104 ~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~-----~~~~~~-------~~~~~e~Sa~----------- 160 (207)
... +.|+++|+||+|+........+.........+.... +....+ ..+++++||+
T Consensus 227 ~~~--~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~ 304 (695)
T 2j69_A 227 KGR--GLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQ 304 (695)
T ss_dssp TTS--CCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTT
T ss_pred Hhh--CCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCch
Confidence 432 678999999999865431100000000000001111 111111 1268999999
Q ss_pred ---CCCCHHHHHHHHHHHHhCC
Q 028595 161 ---TQQNVKAVFDAAIKVVIKP 179 (207)
Q Consensus 161 ---~~~~i~~~f~~i~~~~~~~ 179 (207)
++.|+++++..+.+.+...
T Consensus 305 ~~~~~~Gi~~L~~~L~~~l~~~ 326 (695)
T 2j69_A 305 ADLDGTGFPKFMDSLNTFLTRE 326 (695)
T ss_dssp CCCTTSSHHHHHHHHHHHHHHT
T ss_pred hhhhccCHHHHHHHHHHHHHHh
Confidence 9999999999998877644
No 184
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.67 E-value=8.2e-17 Score=139.08 Aligned_cols=115 Identities=13% Similarity=0.063 Sum_probs=82.5
Q ss_pred ccceeEEEEecccccceeeeeeeccCC--CC------Cc------------cccCceeeeeeeEEEECCeEEEEEEEeCC
Q 028595 2 ELLAKLACLFATQVTSFLLYVLSVSGR--SS------IW------------DYIPTVFDNFSANVVAEGTTVNLGLWDTA 61 (207)
Q Consensus 2 ~~~~ki~iiG~~~~GgKssli~~l~~~--~~------~~------------~~~~t~~~~~~~~~~~~~~~~~l~i~D~~ 61 (207)
+...+|+++|..++| ||||+++|+.. .+ .. ...+|+... ...+..+ .+.++|||||
T Consensus 10 ~~~~~I~IvG~~~aG-KTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~-~~~~~~~--~~~i~liDTP 85 (691)
T 1dar_A 10 KRLRNIGIAAHIDAG-KTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAA-VTTCFWK--DHRINIIDTP 85 (691)
T ss_dssp GGEEEEEEEECTTSC-HHHHHHHHHHHHCC----------------------------CC-EEEEEET--TEEEEEECCC
T ss_pred ccccEEEEECCCCCC-HHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccc-eEEEEEC--CeEEEEEECc
Confidence 346799999999999 99999999831 11 00 111222211 1122333 4789999999
Q ss_pred CCccccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccC
Q 028595 62 GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED 124 (207)
Q Consensus 62 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~ 124 (207)
|+..+...+..+++.+|++|+|+|.++..+.+.. ..|.. +.. .++|+++++||+|+...
T Consensus 86 G~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~-~~~~~-~~~--~~~p~ivviNKiD~~~~ 144 (691)
T 1dar_A 86 GHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSE-TVWRQ-AEK--YKVPRIAFANKMDKTGA 144 (691)
T ss_dssp SSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHH-HHHHH-HHH--TTCCEEEEEECTTSTTC
T ss_pred CccchHHHHHHHHHHCCEEEEEEECCCCcchhhH-HHHHH-HHH--cCCCEEEEEECCCcccC
Confidence 9999998899999999999999999998887776 45543 333 28999999999998753
No 185
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.66 E-value=7.7e-18 Score=135.45 Aligned_cols=154 Identities=16% Similarity=0.111 Sum_probs=102.6
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCCccccCceeee------------------e-----------------------
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDN------------------F----------------------- 42 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~------------------~----------------------- 42 (207)
...|+++|.+++| ||||+|+|++..+.+....+++.. +
T Consensus 34 lp~I~vvG~~~sG-KSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~ 112 (360)
T 3t34_A 34 LPAIAVVGGQSSG-KSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETD 112 (360)
T ss_dssp CCEEEEECBTTSS-HHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCc-HHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHH
Confidence 3489999999999 999999999987643332222100 0
Q ss_pred ------------eeEEEE-CCeEEEEEEEeCCCCccc-------------cccccceecCCcEEEEEEeCCChhhHHHHH
Q 028595 43 ------------SANVVA-EGTTVNLGLWDTAGQEDY-------------NRLRPLSYRGADVFVLAFSLVSRASYENVL 96 (207)
Q Consensus 43 ------------~~~~~~-~~~~~~l~i~D~~G~~~~-------------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~ 96 (207)
...+.+ ......+.+|||||...+ ..+...|+.++|++|+|+|..+.+....
T Consensus 113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~-- 190 (360)
T 3t34_A 113 RETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATS-- 190 (360)
T ss_dssp HTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGC--
T ss_pred HhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCH--
Confidence 000111 011235889999998776 5566788999999999998765443321
Q ss_pred HHHHHHHhhcC-CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCCCCCHHHHHHHH
Q 028595 97 KKWIPELQHYS-PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAA 172 (207)
Q Consensus 97 ~~~~~~i~~~~-~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i 172 (207)
.|+..+.... .+.|+++|+||+|+.+.... ..+.++.+...++. +|+++|+.++.++++.+...
T Consensus 191 -~~~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~----------~~~~~~~~~~~~~~-~~~~v~~~s~~~i~~~~~~~ 255 (360)
T 3t34_A 191 -DAIKISREVDPSGDRTFGVLTKIDLMDKGTD----------AVEILEGRSFKLKY-PWVGVVNRSQADINKNVDMI 255 (360)
T ss_dssp -HHHHHHHHSCTTCTTEEEEEECGGGCCTTCC----------SHHHHTTSSSCCSS-CCEEECCCCHHHHHTTCCHH
T ss_pred -HHHHHHHHhcccCCCEEEEEeCCccCCCccc----------HHHHHcCccccccC-CeEEEEECChHHhccCCCHH
Confidence 2333333333 36899999999999765542 44555555555666 89999999988888765543
No 186
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.65 E-value=9.7e-17 Score=124.13 Aligned_cols=118 Identities=13% Similarity=0.039 Sum_probs=79.7
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCC--ccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccc-------e-
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSI--WDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPL-------S- 73 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~-------~- 73 (207)
.++|+++|..++| ||||+|+|++..+. ..+.++........+..+ ...+.+|||||++.+...... +
T Consensus 39 ~~~I~vvG~~g~G-KSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~ 115 (270)
T 1h65_A 39 SLTILVMGKGGVG-KSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRA--GFTLNIIDTPGLIEGGYINDMALNIIKSFL 115 (270)
T ss_dssp EEEEEEEESTTSS-HHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEET--TEEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred CeEEEEECCCCCC-HHHHHHHHhCCCcccccCCCCcceeeEEEEEeeC--CeEEEEEECCCCCCCccchHHHHHHHHHHh
Confidence 5799999999999 99999999988753 222233222222233333 467899999999876544332 1
Q ss_pred -ecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CC--CcEEEEeeCCCcccCc
Q 028595 74 -YRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PG--VPVVLVGTKLDLREDK 125 (207)
Q Consensus 74 -~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~--~piivv~nK~D~~~~~ 125 (207)
...+|++++|+|++.. ++......|+..+.... .+ .|+++|+||+|+.+.+
T Consensus 116 ~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~ 170 (270)
T 1h65_A 116 LDKTIDVLLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPD 170 (270)
T ss_dssp TTCEECEEEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGG
T ss_pred hcCCCCEEEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcC
Confidence 2368999999998753 33333246666665442 22 7999999999987544
No 187
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.65 E-value=6.5e-17 Score=127.58 Aligned_cols=114 Identities=17% Similarity=0.178 Sum_probs=72.2
Q ss_pred EEEEEEeCCCCcc-------------ccccccceecCCcEEEEEEeCCChhhH-HHHHHHHHHHHhhcCCCCcEEEEeeC
Q 028595 53 VNLGLWDTAGQED-------------YNRLRPLSYRGADVFVLAFSLVSRASY-ENVLKKWIPELQHYSPGVPVVLVGTK 118 (207)
Q Consensus 53 ~~l~i~D~~G~~~-------------~~~~~~~~~~~~d~~i~v~d~~~~~s~-~~~~~~~~~~i~~~~~~~piivv~nK 118 (207)
..+.+|||||... +......++.++|++++|+|.++.... ... ..+...+.. .+.|+++|+||
T Consensus 131 ~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~-~~i~~~~~~--~~~~~i~v~NK 207 (315)
T 1jwy_B 131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDA-LQLAKEVDP--EGKRTIGVITK 207 (315)
T ss_dssp CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSH-HHHHHHHCS--SCSSEEEEEEC
T ss_pred CCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHH-HHHHHHhCC--CCCcEEEEEcC
Confidence 4689999999753 344566788999999999997543211 111 133444433 37899999999
Q ss_pred CCcccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccC---C---CCCHHHHHHHHHHHHhCCC
Q 028595 119 LDLREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSK---T---QQNVKAVFDAAIKVVIKPP 180 (207)
Q Consensus 119 ~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~---~---~~~i~~~f~~i~~~~~~~~ 180 (207)
+|+.+.... ..+.++.....++. .|+++|+. + +.|+.++++.+.+.+...+
T Consensus 208 ~Dl~~~~~~----------~~~~~~~~~~~~~~-~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~~~~ 264 (315)
T 1jwy_B 208 LDLMDKGTD----------AMEVLTGRVIPLTL-GFIGVINRSQEDIIAKKSIRESLKSEILYFKNHP 264 (315)
T ss_dssp TTSSCSSCC----------CHHHHTTSSSCCTT-CEEECCCCCHHHHSSSCCHHHHHHHHHHHHHTCT
T ss_pred cccCCcchH----------HHHHHhCCCccCCC-CeEEEecCChhhhccCCCHHHHHHHHHHHHhCCC
Confidence 999755431 22222211111123 56666555 4 7899999999988887654
No 188
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.65 E-value=1e-15 Score=132.43 Aligned_cols=117 Identities=14% Similarity=0.060 Sum_probs=83.0
Q ss_pred ccceeEEEEecccccceeeeeeeccCC--CCCc-----------cc-------cCceeeeeeeEEEE-----CCeEEEEE
Q 028595 2 ELLAKLACLFATQVTSFLLYVLSVSGR--SSIW-----------DY-------IPTVFDNFSANVVA-----EGTTVNLG 56 (207)
Q Consensus 2 ~~~~ki~iiG~~~~GgKssli~~l~~~--~~~~-----------~~-------~~t~~~~~~~~~~~-----~~~~~~l~ 56 (207)
+...+|+++|..++| ||||+++|+.. .+.. ++ ..|+.... ..+.. ++..+.++
T Consensus 8 ~~~~~I~IiG~~~~G-KTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~-~~~~~~~~~~~~~~~~i~ 85 (704)
T 2rdo_7 8 ARYRNIGISAHIDAG-KTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAA-TTAFWSGMAKQYEPHRIN 85 (704)
T ss_pred ccccEEEEECCCCCC-HHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeece-EEEEECCccccCCceeEE
Confidence 346799999999999 99999999742 1110 00 11221111 11222 23458999
Q ss_pred EEeCCCCccccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccC
Q 028595 57 LWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED 124 (207)
Q Consensus 57 i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~ 124 (207)
||||||+.+|...+..+++.+|++|+|+|+++....+.. ..|. .+.. .++|+++++||+|+...
T Consensus 86 liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~-~~~~-~~~~--~~ip~ilviNKiD~~~~ 149 (704)
T 2rdo_7 86 IIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSE-TVWR-QANK--YKVPRIAFVNKMDRMGA 149 (704)
T ss_pred EEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHH-HHHH-HHHH--cCCCEEEEEeCCCcccc
Confidence 999999999988889999999999999999987666654 3443 3332 37999999999998653
No 189
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.63 E-value=6e-16 Score=133.75 Aligned_cols=115 Identities=17% Similarity=0.123 Sum_probs=82.7
Q ss_pred ccceeEEEEecccccceeeeeeeccC--CCCCc-----------cc-------cCceeeeeeeEEEECCeEEEEEEEeCC
Q 028595 2 ELLAKLACLFATQVTSFLLYVLSVSG--RSSIW-----------DY-------IPTVFDNFSANVVAEGTTVNLGLWDTA 61 (207)
Q Consensus 2 ~~~~ki~iiG~~~~GgKssli~~l~~--~~~~~-----------~~-------~~t~~~~~~~~~~~~~~~~~l~i~D~~ 61 (207)
+...+|+++|..++| ||||+++|+. +.+.. ++ ..|+... ...+..++ +.+.|||||
T Consensus 8 ~~~~~I~IvG~~~aG-KSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~-~~~~~~~~--~~i~liDTP 83 (693)
T 2xex_A 8 EKTRNIGIMAHIDAG-KTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSA-ATTAAWEG--HRVNIIDTP 83 (693)
T ss_dssp TTEEEEEEECCGGGT-HHHHHHHHHHHHSSCC-------------------------CCS-EEEEEETT--EEEEEECCC
T ss_pred ccceEEEEECCCCCC-HHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeee-eEEEEECC--eeEEEEECc
Confidence 346799999999999 9999999984 22110 00 0111111 11233343 778999999
Q ss_pred CCccccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccC
Q 028595 62 GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRED 124 (207)
Q Consensus 62 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~ 124 (207)
|+..+...+..+++.+|++|+|+|+++..+.+.. ..|. .+.. .++|+++++||+|+...
T Consensus 84 G~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~-~~~~-~~~~--~~~p~ilviNK~Dl~~~ 142 (693)
T 2xex_A 84 GHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTE-TVWR-QATT--YGVPRIVFVNKMDKLGA 142 (693)
T ss_dssp CCSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHH-HHHH-HHHH--TTCCEEEEEECTTSTTC
T ss_pred CCcchHHHHHHHHHHCCEEEEEECCCCCCcHHHH-HHHH-HHHH--cCCCEEEEEECCCcccc
Confidence 9999988888999999999999999998777765 4444 3433 27999999999998753
No 190
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.62 E-value=2.7e-16 Score=127.63 Aligned_cols=84 Identities=12% Similarity=0.083 Sum_probs=48.6
Q ss_pred eeEEEEecccccceeeeeeeccCCCCC-cccc-----Cceeeeeee-E---------------EEECC-eEEEEEEEeCC
Q 028595 5 AKLACLFATQVTSFLLYVLSVSGRSSI-WDYI-----PTVFDNFSA-N---------------VVAEG-TTVNLGLWDTA 61 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~~~~~-~~~~-----~t~~~~~~~-~---------------~~~~~-~~~~l~i~D~~ 61 (207)
+||+++|.+++| ||||+|+|++.... ..+. |+.+..+.. . ..+++ ..+.+.+||||
T Consensus 1 ~kI~ivG~pnvG-KSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtp 79 (397)
T 1wxq_A 1 MEIGVVGKPNVG-KSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVA 79 (397)
T ss_dssp CEEEEEECTTSS-HHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC
T ss_pred CEEEEECCCCCC-HHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECC
Confidence 489999999999 99999999988732 1222 222211100 0 11233 25789999999
Q ss_pred CCcc----cccccc---ceecCCcEEEEEEeCCCh
Q 028595 62 GQED----YNRLRP---LSYRGADVFVLAFSLVSR 89 (207)
Q Consensus 62 G~~~----~~~~~~---~~~~~~d~~i~v~d~~~~ 89 (207)
|... .+.+.. .+++++|++++|+|+++.
T Consensus 80 G~~~~a~~~~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 80 GLVPGAHEGRGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp ---------------CCCSSTTCSEEEEEEETTCC
T ss_pred CcccchhhhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence 9753 333333 456899999999999875
No 191
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=99.59 E-value=4.6e-17 Score=122.46 Aligned_cols=152 Identities=15% Similarity=0.042 Sum_probs=93.7
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeee-------------eEEEEC-CeEE----------------
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFS-------------ANVVAE-GTTV---------------- 53 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~-------------~~~~~~-~~~~---------------- 53 (207)
..+|+++|.+++| ||||+++|+...+...+.++++.++. ..+.++ +..+
T Consensus 38 ~~~i~ivG~~gvG-KTtl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~ 116 (226)
T 2hf9_A 38 VVAFDFMGAIGSG-KTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKECHLDAHLVGHALEDLNL 116 (226)
T ss_dssp CEEEEEEESTTSS-HHHHHHHHHHHHTTTCCEEEEEEETTTHHHHHHHHTTTCEEEEEECTTCSSCCHHHHHHHHTTSCG
T ss_pred CeEEEEEcCCCCC-HHHHHHHHHHHhccCCeEEEEECCCCCCccHHHHHhcCCcEEEecCCceEeccHHHHHHHHHHHhc
Confidence 5799999999999 99999999977655555566654443 222222 2112
Q ss_pred ---EEEEEeCCCCccccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccC
Q 028595 54 ---NLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLAD 130 (207)
Q Consensus 54 ---~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~ 130 (207)
.+.++|++|.-... ..+-...+..+.+.|..+...... .+...+ ..|.++|+||+|+.+....
T Consensus 117 ~~~d~~~id~~g~i~~~---~s~~~~~~~~~~v~~~~~~~~~~~---~~~~~~-----~~~~iiv~NK~Dl~~~~~~--- 182 (226)
T 2hf9_A 117 DEIDLLFIENVGNLICP---ADFDLGTHKRIVVISTTEGDDTIE---KHPGIM-----KTADLIVINKIDLADAVGA--- 182 (226)
T ss_dssp GGCSEEEEECCSCSSGG---GGCCCSCSEEEEEEEGGGCTTTTT---TCHHHH-----TTCSEEEEECGGGHHHHTC---
T ss_pred CCCCEEEEeCCCCccCc---chhhhccCcEEEEEecCcchhhHh---hhhhHh-----hcCCEEEEeccccCchhHH---
Confidence 23444444421000 001112344566666432211111 111112 5788999999999764332
Q ss_pred CCCCcccCHHHHHHHHHHhC-CcEEEEeccCCCCCHHHHHHHHHHHHh
Q 028595 131 HPGLVPVTTAQGEELRKQIG-ASYYIECSSKTQQNVKAVFDAAIKVVI 177 (207)
Q Consensus 131 ~~~~~~v~~~~~~~~~~~~~-~~~~~e~Sa~~~~~i~~~f~~i~~~~~ 177 (207)
..+++..+++.++ ..+++++||++|.|++++|+.+.+.+.
T Consensus 183 -------~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~ 223 (226)
T 2hf9_A 183 -------DIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVK 223 (226)
T ss_dssp -------CHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHH
Confidence 5677777777653 238999999999999999999988764
No 192
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=99.59 E-value=8.3e-16 Score=115.14 Aligned_cols=154 Identities=15% Similarity=0.021 Sum_probs=96.6
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCCccccCceeeee------------e-eEEEECC------------------eE
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF------------S-ANVVAEG------------------TT 52 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~------------~-~~~~~~~------------------~~ 52 (207)
..+|+++|.+++| ||||+++|+..........++..++ . ..+.++. ..
T Consensus 30 ~~~i~i~G~~g~G-KTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (221)
T 2wsm_A 30 TVAVNIMGAIGSG-KTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD 108 (221)
T ss_dssp CEEEEEEECTTSC-HHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred ceEEEEEcCCCCC-HHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence 4689999999999 9999999986521111111111000 0 0111111 23
Q ss_pred EEEEEEeCCCCccccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCC
Q 028595 53 VNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHP 132 (207)
Q Consensus 53 ~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~ 132 (207)
+.+.+|||+|+-.... .+....+.+++|+|+++..... ..+...+ +.|+++|+||+|+.+....
T Consensus 109 ~d~iiidt~G~~~~~~---~~~~~~~~~i~vvd~~~~~~~~---~~~~~~~-----~~~~iiv~NK~Dl~~~~~~----- 172 (221)
T 2wsm_A 109 CDLLLIENVGNLICPV---DFDLGENYRVVMVSVTEGDDVV---EKHPEIF-----RVADLIVINKVALAEAVGA----- 172 (221)
T ss_dssp CSEEEEEEEEBSSGGG---GCCCSCSEEEEEEEGGGCTTHH---HHCHHHH-----HTCSEEEEECGGGHHHHTC-----
T ss_pred CCEEEEeCCCCCCCCc---hhccccCcEEEEEeCCCcchhh---hhhhhhh-----hcCCEEEEecccCCcchhh-----
Confidence 5678999998511111 1112568899999988754321 1222222 5789999999998654321
Q ss_pred CCcccCHHHHHHHHHHhC-CcEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 028595 133 GLVPVTTAQGEELRKQIG-ASYYIECSSKTQQNVKAVFDAAIKVVIKP 179 (207)
Q Consensus 133 ~~~~v~~~~~~~~~~~~~-~~~~~e~Sa~~~~~i~~~f~~i~~~~~~~ 179 (207)
..+++..+++.++ ..+++++||++|.|++++|+++.+.+...
T Consensus 173 -----~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~ 215 (221)
T 2wsm_A 173 -----DVEKMKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNVH 215 (221)
T ss_dssp -----CHHHHHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC--
T ss_pred -----HHHHHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHH
Confidence 5566666666654 24899999999999999999999887654
No 193
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.59 E-value=4e-14 Score=111.05 Aligned_cols=132 Identities=15% Similarity=0.049 Sum_probs=96.2
Q ss_pred eeccCCCCCccccCceeeeeeeEEEECCeEEEEEEEeCCCCccccccccceecCCcEEEEEEeCCChh-hHHHHHHHHHH
Q 028595 23 LSVSGRSSIWDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRA-SYENVLKKWIP 101 (207)
Q Consensus 23 ~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~-s~~~~~~~~~~ 101 (207)
.+...+.+.....|++|+........++..+- . ..++++..+.+.+++++|++++|+|+++++ ++..+ ..|+.
T Consensus 31 ~~~~~~~~~~~~~~~vGD~V~~~~~~~~~g~I---~--~i~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l-~~~l~ 104 (302)
T 2yv5_A 31 RGIPRGKVLKKTKIYAGDYVWGEVVDPNTFAI---E--EVEERKNLLIRPKVANVDRVIIVETLKMPEFNNYLL-DNMLV 104 (302)
T ss_dssp EEEECSSSTTSSCCCBTCEEEEEEEETTEEEE---E--EECCCSCEEETTEEESCCEEEEEECSTTTTCCHHHH-HHHHH
T ss_pred EEEEcCCcccCCCCcCceEEEEEEccCCeEEE---E--eeCChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHH-HHHHH
Confidence 33344444333337777665444333332221 1 137888899999999999999999999986 88776 78888
Q ss_pred HHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccC-HHHHHHHHHHhCCcEEEEeccCCCCCHHHHHHHHH
Q 028595 102 ELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVT-TAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAI 173 (207)
Q Consensus 102 ~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i~ 173 (207)
.+.. .++|+++|+||+|+.+...+ . .+++.++++.+++ +++++||++|.|++++|..+.
T Consensus 105 ~~~~--~~~~~ilV~NK~DL~~~~~v----------~~~~~~~~~~~~~g~-~~~~~SA~~g~gi~~L~~~l~ 164 (302)
T 2yv5_A 105 VYEY--FKVEPVIVFNKIDLLNEEEK----------KELERWISIYRDAGY-DVLKVSAKTGEGIDELVDYLE 164 (302)
T ss_dssp HHHH--TTCEEEEEECCGGGCCHHHH----------HHHHHHHHHHHHTTC-EEEECCTTTCTTHHHHHHHTT
T ss_pred HHHh--CCCCEEEEEEcccCCCcccc----------HHHHHHHHHHHHCCC-eEEEEECCCCCCHHHHHhhcc
Confidence 7765 48999999999999754321 2 4566777777888 999999999999999998764
No 194
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.59 E-value=2.3e-17 Score=132.29 Aligned_cols=157 Identities=20% Similarity=0.141 Sum_probs=94.3
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCCccc------cCcee--------------------eee---------------
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDY------IPTVF--------------------DNF--------------- 42 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~------~~t~~--------------------~~~--------------- 42 (207)
..+|+++|.+++| ||||+|+|++..+.+.. .|+.. .++
T Consensus 31 ~~~I~vvG~~~~G-KSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~ 109 (353)
T 2x2e_A 31 LPQIAVVGGQSAG-KSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 109 (353)
T ss_dssp CCEEEEECBTTSS-HHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCC-HHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhc
Confidence 4689999999999 99999999998864221 13210 000
Q ss_pred ---------eeEEEECC-eEEEEEEEeCCCCc-------------cccccccceecCCcEEEE-EEeCCChhhHHHHHHH
Q 028595 43 ---------SANVVAEG-TTVNLGLWDTAGQE-------------DYNRLRPLSYRGADVFVL-AFSLVSRASYENVLKK 98 (207)
Q Consensus 43 ---------~~~~~~~~-~~~~l~i~D~~G~~-------------~~~~~~~~~~~~~d~~i~-v~d~~~~~s~~~~~~~ 98 (207)
...+.+.+ ....+.||||||.. .+..+...|+.+++.+|+ |.|.+....-.+. ..
T Consensus 110 g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~-~~ 188 (353)
T 2x2e_A 110 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA-LK 188 (353)
T ss_dssp TTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHH-HH
T ss_pred ccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHH-HH
Confidence 00011111 13568999999953 234456677766655555 5555542222222 23
Q ss_pred HHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHH--HHHHhCCcEEEEeccCCCCCHHHHHHHHHH
Q 028595 99 WIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEE--LRKQIGASYYIECSSKTQQNVKAVFDAAIK 174 (207)
Q Consensus 99 ~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~~~~~~e~Sa~~~~~i~~~f~~i~~ 174 (207)
++..+.. .+.|+++|+||+|+.+.... ..+..+. +....++.+++++||+++.|++++++.+.+
T Consensus 189 i~~~~~~--~~~~~i~V~NK~Dl~~~~~~----------~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~ 254 (353)
T 2x2e_A 189 VAKEVDP--QGQRTIGVITKLDLMDEGTD----------ARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA 254 (353)
T ss_dssp HHHHHCT--TCTTEEEEEECGGGSCTTCC----------CHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred HHHHhCc--CCCceEEEeccccccCcchh----------HHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence 4444432 37899999999999754321 1111110 111123345678999999999999999876
No 195
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.53 E-value=8.5e-14 Score=111.16 Aligned_cols=82 Identities=15% Similarity=0.009 Sum_probs=56.4
Q ss_pred eeEEEEecccccceeeeeeeccCCCCCc-cccC-ceeeeeeeEEEECCe---------------EEEEEEEeCCCCcccc
Q 028595 5 AKLACLFATQVTSFLLYVLSVSGRSSIW-DYIP-TVFDNFSANVVAEGT---------------TVNLGLWDTAGQEDYN 67 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~~~~~~-~~~~-t~~~~~~~~~~~~~~---------------~~~l~i~D~~G~~~~~ 67 (207)
.+|+++|.+++| ||||+|+|++..... .+.. |+... ...+.+++. ...+.+|||||+..+.
T Consensus 3 ~kI~IVG~pnvG-KSTL~n~Lt~~~~~v~~~p~tTi~p~-~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a 80 (363)
T 1jal_A 3 FKCGIVGLPNVG-KSTLFNALTKAGIEAANYPFCTIEPN-TGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGA 80 (363)
T ss_dssp CEEEEECCTTSS-HHHHHHHHHHTC------CCCCCCCC-SSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTH
T ss_pred CEEEEECCCCCC-HHHHHHHHHCCCCcccCCCCceECce-EEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccc
Confidence 589999999999 999999999876422 2221 32222 123444442 2578999999988653
Q ss_pred ----ccccc---eecCCcEEEEEEeCCC
Q 028595 68 ----RLRPL---SYRGADVFVLAFSLVS 88 (207)
Q Consensus 68 ----~~~~~---~~~~~d~~i~v~d~~~ 88 (207)
.+... +++++|++++|+|+++
T Consensus 81 ~~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 81 SKGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HHHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred cccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 34443 4789999999999986
No 196
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.52 E-value=7.4e-15 Score=129.34 Aligned_cols=116 Identities=14% Similarity=0.074 Sum_probs=85.8
Q ss_pred cceeEEEEecccccceeeeeeeccCCC------------CCc----cc--cCceeeee-eeEEE------------ECCe
Q 028595 3 LLAKLACLFATQVTSFLLYVLSVSGRS------------SIW----DY--IPTVFDNF-SANVV------------AEGT 51 (207)
Q Consensus 3 ~~~ki~iiG~~~~GgKssli~~l~~~~------------~~~----~~--~~t~~~~~-~~~~~------------~~~~ 51 (207)
...||+++|..++| ||||+++|+... +.+ +. ..|+.... ...+. .++.
T Consensus 18 ~~rnI~IiG~~~~G-KTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~ 96 (842)
T 1n0u_A 18 NVRNMSVIAHVDHG-KSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGN 96 (842)
T ss_dssp GEEEEEEECCGGGT-HHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSS
T ss_pred cccEEEEECCCCCC-HHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCC
Confidence 35799999999999 999999998541 110 00 11222111 11222 2455
Q ss_pred EEEEEEEeCCCCccccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCccc
Q 028595 52 TVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRE 123 (207)
Q Consensus 52 ~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~ 123 (207)
.+.++||||||+.+|...+..+++.+|++|+|+|+++..+++.. ..|..... .++|+++++||+|+..
T Consensus 97 ~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~-~~~~~~~~---~~~p~ilviNK~D~~~ 164 (842)
T 1n0u_A 97 SFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTE-TVLRQALG---ERIKPVVVINKVDRAL 164 (842)
T ss_dssp EEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHH-HHHHHHHH---TTCEEEEEEECHHHHH
T ss_pred CceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHH-HHHHHHHH---cCCCeEEEEECCCcch
Confidence 78999999999999999999999999999999999998888876 55554433 3799999999999863
No 197
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.47 E-value=2.2e-14 Score=120.99 Aligned_cols=118 Identities=13% Similarity=0.049 Sum_probs=79.7
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCC---ccccCceeeeeee------EEEECCe-----------------------
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSI---WDYIPTVFDNFSA------NVVAEGT----------------------- 51 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~---~~~~~t~~~~~~~------~~~~~~~----------------------- 51 (207)
..+|+++|..++| ||||+|+|++..+. ....|+....... .+..+..
T Consensus 65 ~~~V~vvG~~n~G-KSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~~ 143 (550)
T 2qpt_A 65 KPMVLVAGQYSTG-KTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNRF 143 (550)
T ss_dssp CCEEEEEEBTTSC-HHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTTE
T ss_pred CcEEEEECCCCCC-HHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccccc
Confidence 4689999999999 99999999998863 2233332110000 0000000
Q ss_pred E---------EEEEEEeCCCCcc-----------ccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCc
Q 028595 52 T---------VNLGLWDTAGQED-----------YNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVP 111 (207)
Q Consensus 52 ~---------~~l~i~D~~G~~~-----------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~p 111 (207)
. ..+.+|||||... +......++..+|++++|+|+++....... ..|+..+... +.|
T Consensus 144 ~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~-~~~l~~l~~~--~~p 220 (550)
T 2qpt_A 144 MCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEF-SEAIGALRGH--EDK 220 (550)
T ss_dssp EEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHH-HHHHHHTTTC--GGG
T ss_pred eEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHH-HHHHHHHHhc--CCC
Confidence 0 2588999999764 334455678889999999999886444444 4666666542 689
Q ss_pred EEEEeeCCCcccCc
Q 028595 112 VVLVGTKLDLREDK 125 (207)
Q Consensus 112 iivv~nK~D~~~~~ 125 (207)
+++|+||+|+....
T Consensus 221 vilVlNK~Dl~~~~ 234 (550)
T 2qpt_A 221 IRVVLNKADMVETQ 234 (550)
T ss_dssp EEEEEECGGGSCHH
T ss_pred EEEEEECCCccCHH
Confidence 99999999997543
No 198
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.45 E-value=1.1e-14 Score=116.74 Aligned_cols=107 Identities=14% Similarity=0.090 Sum_probs=70.2
Q ss_pred EEEEEEeCCCCccccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCC
Q 028595 53 VNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHP 132 (207)
Q Consensus 53 ~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~ 132 (207)
+.+.||||||-.. .....+..+|++++|+|.+..+..+.+ . ..+ .+.|+++|+||+|+.+....
T Consensus 172 ~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l-~---~~~----~~~p~ivVlNK~Dl~~~~~~----- 235 (355)
T 3p32_A 172 FDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGI-K---KGV----LELADIVVVNKADGEHHKEA----- 235 (355)
T ss_dssp CCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTC-C---TTS----GGGCSEEEEECCCGGGHHHH-----
T ss_pred CCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHH-H---HhH----hhcCCEEEEECCCCcChhHH-----
Confidence 6789999999432 122335789999999998776555433 1 111 24689999999998654321
Q ss_pred CCcccCHHHHHHHHHHhC------CcEEEEeccCCCCCHHHHHHHHHHHHhC
Q 028595 133 GLVPVTTAQGEELRKQIG------ASYYIECSSKTQQNVKAVFDAAIKVVIK 178 (207)
Q Consensus 133 ~~~~v~~~~~~~~~~~~~------~~~~~e~Sa~~~~~i~~~f~~i~~~~~~ 178 (207)
.....+........+ ..+++++||++|.|++++++++.+.+..
T Consensus 236 ---~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 236 ---RLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp ---HHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 001122222222221 1389999999999999999999988753
No 199
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.43 E-value=1.2e-13 Score=110.79 Aligned_cols=147 Identities=13% Similarity=0.069 Sum_probs=93.2
Q ss_pred eeEEEEecccccceeeeeeeccCCCC-Cccc-----cCceeeeeeeEEEECC-------------------eEEEEEEEe
Q 028595 5 AKLACLFATQVTSFLLYVLSVSGRSS-IWDY-----IPTVFDNFSANVVAEG-------------------TTVNLGLWD 59 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~~~~-~~~~-----~~t~~~~~~~~~~~~~-------------------~~~~l~i~D 59 (207)
.+|+++|.+++| ||||+|++++... ...+ .|+.+. ..+++ ....+.+||
T Consensus 2 ~~v~IVG~pnvG-KSTL~n~L~~~~~~v~~~p~~Ti~pn~g~-----~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvD 75 (368)
T 2dby_A 2 LAVGIVGLPNVG-KSTLFNALTRANALAANYPFATIDKNVGV-----VPLEDERLYALQRTFAKGERVPPVVPTHVEFVD 75 (368)
T ss_dssp CSEEEECCSSSS-HHHHHHHHHHHHTTCSSCCGGGGSTTEEE-----EECCCHHHHHHHHHHCBTTBCCCEECCEEEEEE
T ss_pred cEEEEECCCCCC-HHHHHHHHhCCCCcccCCCCceeccceee-----EecChHHHHHHHHHhcccccccccCCceEEEEE
Confidence 689999999999 9999999987642 1122 233321 12221 235789999
Q ss_pred CCCCcccc----cccc---ceecCCcEEEEEEeCCCh----------hhHHHHHHHHH----------------------
Q 028595 60 TAGQEDYN----RLRP---LSYRGADVFVLAFSLVSR----------ASYENVLKKWI---------------------- 100 (207)
Q Consensus 60 ~~G~~~~~----~~~~---~~~~~~d~~i~v~d~~~~----------~s~~~~~~~~~---------------------- 100 (207)
|||..... .+.. .+++.+|++++|+|+++. +...++ ..+.
T Consensus 76 tpGl~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~~~~~~~v~~~~dp~~d~-~~i~~EL~~~d~~~l~k~~~~~~~~~ 154 (368)
T 2dby_A 76 IAGLVKGAHKGEGLGNQFLAHIREVAAIAHVLRCFPDPDVVHVMGRVDPLEDA-EVVETELLLADLATLERRLERLRKEA 154 (368)
T ss_dssp CCSCCCCCCSSSCTTHHHHHHHHTCSEEEEEEECCCCH-----------HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCccccccccchHHHHHHHHHHhCCEEEEEEECCCCCceeEeecccChHHHH-HHHhhHHHHccHHHHHHHHHHHHhhh
Confidence 99987653 2333 347899999999999862 122211 1100
Q ss_pred -----------------HHHhh-------------------cC--CCCcEEEEeeCCCcc--cC-cccccCCCCCcccCH
Q 028595 101 -----------------PELQH-------------------YS--PGVPVVLVGTKLDLR--ED-KHYLADHPGLVPVTT 139 (207)
Q Consensus 101 -----------------~~i~~-------------------~~--~~~piivv~nK~D~~--~~-~~~~~~~~~~~~v~~ 139 (207)
..+.. +. ..+|+++++|+.|.. +. +. ...
T Consensus 155 ~~~~~~~~~~~~l~~~~~~L~~~~~~~~~~~~~~~~~~l~~~~~lt~KPvi~v~N~~e~d~~~~~~n----------~~~ 224 (368)
T 2dby_A 155 RADRERLPLLEAAEGLYVHLQEGKPARTFPPSEAVARFLKETPLLTAKPVIYVANVAEEDLPDGRGN----------PQV 224 (368)
T ss_dssp HHCGGGHHHHHHHHHHHHHHHTTCCGGGSCCCHHHHHHHHHSCCGGGSCEEEEEECCGGGTTTCTTC----------HHH
T ss_pred ccchhHHHHHHHHHHHHHHHhcCCCcccCCCCHHHHHHHHHHhhhhcCCeEEeccccHHhhcccchh----------hHH
Confidence 01111 00 137999999999853 21 01 267
Q ss_pred HHHHHHHHHhCCcEEEEeccCCCCCHHHHH
Q 028595 140 AQGEELRKQIGASYYIECSSKTQQNVKAVF 169 (207)
Q Consensus 140 ~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f 169 (207)
+.++++++..+. +++++||+...++.+++
T Consensus 225 ~~v~~~a~~~g~-~vv~iSAk~E~el~eL~ 253 (368)
T 2dby_A 225 EAVRRKALEEGA-EVVVVSARLEAELAELS 253 (368)
T ss_dssp HHHHHHHHHHTC-EEEEECHHHHHHHHTSC
T ss_pred HHHHHHHHHcCC-eEEEeechhHHHHHHhc
Confidence 888999998887 99999998755554443
No 200
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.39 E-value=7.2e-13 Score=111.65 Aligned_cols=116 Identities=11% Similarity=0.001 Sum_probs=81.4
Q ss_pred cceeEEEEecccccceeeeeeeccCCC--C---------------CccccCce---eeee-eeEEEECCeEEEEEEEeCC
Q 028595 3 LLAKLACLFATQVTSFLLYVLSVSGRS--S---------------IWDYIPTV---FDNF-SANVVAEGTTVNLGLWDTA 61 (207)
Q Consensus 3 ~~~ki~iiG~~~~GgKssli~~l~~~~--~---------------~~~~~~t~---~~~~-~~~~~~~~~~~~l~i~D~~ 61 (207)
...+|+|+|-..+| ||||..+++... + .-++.+.- |.+. +..+.+..+.+.++|+|||
T Consensus 30 r~RNiaIiaHvdaG-KTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTP 108 (548)
T 3vqt_A 30 RRRTFAIISHPDAG-KTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTP 108 (548)
T ss_dssp TEEEEEEECCTTSS-HHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCC
T ss_pred ccceEEEEeCCCCC-HHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCC
Confidence 46899999999999 999999986211 0 00111100 1111 1122222234789999999
Q ss_pred CCccccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCccc
Q 028595 62 GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRE 123 (207)
Q Consensus 62 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~ 123 (207)
|+.+|..-....++-+|++|+|+|..+.-..+.. ..|...... ++|.+++.||+|...
T Consensus 109 GHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~-~v~~~a~~~---~lp~i~fINK~Dr~~ 166 (548)
T 3vqt_A 109 GHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTR-KLMDVCRMR---ATPVMTFVNKMDREA 166 (548)
T ss_dssp CGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHH-HHHHHHHHT---TCCEEEEEECTTSCC
T ss_pred CcHHHHHHHHHHHHhcCceEEEeecCCCcccccH-HHHHHHHHh---CCceEEEEecccchh
Confidence 9999999999999999999999999987776665 555444333 899999999999864
No 201
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.38 E-value=3.6e-14 Score=113.49 Aligned_cols=103 Identities=15% Similarity=0.106 Sum_probs=62.3
Q ss_pred EEEEEEeCCCCccccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCC
Q 028595 53 VNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHP 132 (207)
Q Consensus 53 ~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~ 132 (207)
+.+.++||+|.... .......+|++++|+|.++....+.+ .. .+ -..|.++|+||+|+.+...
T Consensus 167 ~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i-~~---~i----l~~~~ivVlNK~Dl~~~~~------ 229 (349)
T 2www_A 167 YDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGI-KR---GI----IEMADLVAVTKSDGDLIVP------ 229 (349)
T ss_dssp CSEEEEECCCC--C---HHHHHTTCSEEEEEECCC--------------------CCSCSEEEECCCSGGGHHH------
T ss_pred CCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHh-HH---HH----HhcCCEEEEeeecCCCchh------
Confidence 56789999995321 12345689999999999876543322 11 11 1468899999999864321
Q ss_pred CCcccCHHHHHHHHHHh---------CCcEEEEeccCCCCCHHHHHHHHHHHHh
Q 028595 133 GLVPVTTAQGEELRKQI---------GASYYIECSSKTQQNVKAVFDAAIKVVI 177 (207)
Q Consensus 133 ~~~~v~~~~~~~~~~~~---------~~~~~~e~Sa~~~~~i~~~f~~i~~~~~ 177 (207)
.......+...+ ...+++.+||++|.|+++++++|.+.+.
T Consensus 230 -----~~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~ 278 (349)
T 2www_A 230 -----ARRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQD 278 (349)
T ss_dssp -----HHHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHH
Confidence 111222232211 1237889999999999999999988753
No 202
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=99.37 E-value=4.2e-13 Score=98.33 Aligned_cols=107 Identities=7% Similarity=-0.036 Sum_probs=67.6
Q ss_pred CCCCccccccccceecCCcEEEEEEeCCChhhHHHHHHHH---HHHHhhc--CCCCcEEEEeeCC-CcccCcccccCCCC
Q 028595 60 TAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKW---IPELQHY--SPGVPVVLVGTKL-DLREDKHYLADHPG 133 (207)
Q Consensus 60 ~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~---~~~i~~~--~~~~piivv~nK~-D~~~~~~~~~~~~~ 133 (207)
.+||+..+.+|++||.++|++|||.|.+|.+-.+ ....+ ...+.+. ..++|++|++||. |++..-
T Consensus 109 ~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~Am-------- 179 (227)
T 3l82_B 109 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKRM-------- 179 (227)
T ss_dssp --------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSCBC--------
T ss_pred cCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccCCC--------
Confidence 4589999999999999999999999999985433 22333 4444432 2579999999995 675432
Q ss_pred CcccCHHHHHHHHHH--hCC-cEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 028595 134 LVPVTTAQGEELRKQ--IGA-SYYIECSSKTQQNVKAVFDAAIKVVIKP 179 (207)
Q Consensus 134 ~~~v~~~~~~~~~~~--~~~-~~~~e~Sa~~~~~i~~~f~~i~~~~~~~ 179 (207)
+..++.+.... .+- -.+..|||++|+|+.+.++|+.+.+...
T Consensus 180 ----s~~EI~e~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~k 224 (227)
T 3l82_B 180 ----PCFYLAHELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESK 224 (227)
T ss_dssp ----CHHHHHHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTTTC
T ss_pred ----CHHHHHHHcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHHhh
Confidence 33332222111 111 1456799999999999999998766543
No 203
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.36 E-value=8.2e-13 Score=101.28 Aligned_cols=120 Identities=13% Similarity=0.002 Sum_probs=69.0
Q ss_pred EEEEEEeCCCCcccccccc------ceecCCcEEEEEEeCCChhhHHHHHHHHHHHHh-hcCCCCcEEEEeeCCCcccCc
Q 028595 53 VNLGLWDTAGQEDYNRLRP------LSYRGADVFVLAFSLVSRASYENVLKKWIPELQ-HYSPGVPVVLVGTKLDLREDK 125 (207)
Q Consensus 53 ~~l~i~D~~G~~~~~~~~~------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~-~~~~~~piivv~nK~D~~~~~ 125 (207)
+.+.||||||+........ .++.. ++++++.|.+...+.......+..... ....+.|+++|+||+|+....
T Consensus 109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~~~ 187 (262)
T 1yrb_A 109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEE 187 (262)
T ss_dssp CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCHH
T ss_pred CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEecccccccc
Confidence 5789999999876543221 13456 888888887543332222111111111 111378999999999986543
Q ss_pred ccccCCCCCccc--CHHH-HHH-----------------HHHHhCC-cEEEEeccCCCCCHHHHHHHHHHHHh
Q 028595 126 HYLADHPGLVPV--TTAQ-GEE-----------------LRKQIGA-SYYIECSSKTQQNVKAVFDAAIKVVI 177 (207)
Q Consensus 126 ~~~~~~~~~~~v--~~~~-~~~-----------------~~~~~~~-~~~~e~Sa~~~~~i~~~f~~i~~~~~ 177 (207)
.. .+ .... ..+. ... +++.++. .+++++||+++.|++++++++.+.+.
T Consensus 188 ~~-~~---~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~ 256 (262)
T 1yrb_A 188 EK-ER---HRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYC 256 (262)
T ss_dssp HH-HH---HHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHH
T ss_pred cH-HH---HHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhc
Confidence 10 00 0000 0000 001 1244443 27899999999999999999988764
No 204
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.29 E-value=4.7e-13 Score=106.73 Aligned_cols=106 Identities=15% Similarity=0.145 Sum_probs=66.2
Q ss_pred EEEEEEeCCCCccccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCC
Q 028595 53 VNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHP 132 (207)
Q Consensus 53 ~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~ 132 (207)
+.+.||||||...... .....+|++++|+|.++.+..+.+ .. .. .+.|.++|+||+|+.+....
T Consensus 149 ~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~~~l-~~--~~-----~~~p~ivv~NK~Dl~~~~~~----- 212 (341)
T 2p67_A 149 YDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGI-KK--GL-----MEVADLIVINKDDGDNHTNV----- 212 (341)
T ss_dssp CSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCC-CH--HH-----HHHCSEEEECCCCTTCHHHH-----
T ss_pred CCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHHHHHH-HH--hh-----hcccCEEEEECCCCCChHHH-----
Confidence 5789999999654332 245789999999999765432221 11 01 14688999999998653221
Q ss_pred CCcccCHHHHHHHHHHhC------CcEEEEeccCCCCCHHHHHHHHHHHHh
Q 028595 133 GLVPVTTAQGEELRKQIG------ASYYIECSSKTQQNVKAVFDAAIKVVI 177 (207)
Q Consensus 133 ~~~~v~~~~~~~~~~~~~------~~~~~e~Sa~~~~~i~~~f~~i~~~~~ 177 (207)
....++.+.....++ ..+++++||++|.|++++++.+.+.+.
T Consensus 213 ---~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~ 260 (341)
T 2p67_A 213 ---AIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT 260 (341)
T ss_dssp ---HHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 001122333223332 247899999999999999999988764
No 205
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.28 E-value=9e-13 Score=113.96 Aligned_cols=157 Identities=17% Similarity=0.066 Sum_probs=96.3
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCCcccc-Cceee------------------------------------------
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYI-PTVFD------------------------------------------ 40 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~-~t~~~------------------------------------------ 40 (207)
..+|+++|..++| ||||+|+|++..+.+.-. +++..
T Consensus 51 lp~I~vvG~~saG-KSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~ 129 (772)
T 3zvr_A 51 LPQIAVVGGQSAG-KSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 129 (772)
T ss_dssp CSEEEEEECTTTC-HHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCc-HHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhc
Confidence 4589999999999 999999999987632111 11000
Q ss_pred ---------eeeeEEEECCeEEEEEEEeCCCCcc-------------cccccccee-cCCcEEEEEEeCCChhhHHHHHH
Q 028595 41 ---------NFSANVVAEGTTVNLGLWDTAGQED-------------YNRLRPLSY-RGADVFVLAFSLVSRASYENVLK 97 (207)
Q Consensus 41 ---------~~~~~~~~~~~~~~l~i~D~~G~~~-------------~~~~~~~~~-~~~d~~i~v~d~~~~~s~~~~~~ 97 (207)
.....+...+ ...+.++||||-.. ...+...|+ ..+|++++|.|.++.....+. .
T Consensus 130 g~~~~is~~~i~l~I~~P~-~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~-l 207 (772)
T 3zvr_A 130 GTNKGISPVPINLRVYSPH-VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA-L 207 (772)
T ss_dssp CSTTCCCSCCEEEEEEETT-CCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHH-H
T ss_pred CCCCcccccceEEEEecCC-CCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHH-H
Confidence 0000111111 12478999999433 122334444 468999999999875433332 2
Q ss_pred HHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHH--HHHHhCCcEEEEeccCCCCCHHHHHHHHHHH
Q 028595 98 KWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEE--LRKQIGASYYIECSSKTQQNVKAVFDAAIKV 175 (207)
Q Consensus 98 ~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~~~~~~e~Sa~~~~~i~~~f~~i~~~ 175 (207)
.++..+.. .+.|+++|.||+|+.+.... ....... +...+++.+++.+||++|.|++++++.+.+.
T Consensus 208 ~ll~~L~~--~g~pvIlVlNKiDlv~~~~~----------~~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e 275 (772)
T 3zvr_A 208 KIAKEVDP--QGQRTIGVITKLDLMDEGTD----------ARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 275 (772)
T ss_dssp HHHHHHCT--TCSSEEEEEECTTSSCTTCC----------SHHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred HHHHHHHh--cCCCEEEEEeCcccCCcchh----------hHHHHHHHhhhhhccCCceEEecccccccchhHHHHHHHH
Confidence 34445543 37899999999999765431 1111110 0001243456779999999999999998863
No 206
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=99.26 E-value=3.3e-12 Score=98.01 Aligned_cols=107 Identities=7% Similarity=-0.038 Sum_probs=72.8
Q ss_pred CCCCccccccccceecCCcEEEEEEeCCChhhHH---HHHHHHHHHHhhc--CCCCcEEEEeeC-CCcccCcccccCCCC
Q 028595 60 TAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYE---NVLKKWIPELQHY--SPGVPVVLVGTK-LDLREDKHYLADHPG 133 (207)
Q Consensus 60 ~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~---~~~~~~~~~i~~~--~~~~piivv~nK-~D~~~~~~~~~~~~~ 133 (207)
.+||+..+.+|++|+.++|++|+|+|.+|++..+ ++ .++...+.+. ..++|++|++|| .|++..-
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL-~eL~~mL~e~~~l~~apLLVfANKkQDlp~Am-------- 264 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEF-SHIMAMTDPAFGSSGRPLLVLSCISQGDVKRM-------- 264 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHH-HHHHHHHCHHHHCTTCCEEEEEEESSTTSCBC--------
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHH-HHHHHHhcchhhcCCCeEEEEeCCcccccCCC--------
Confidence 4789999999999999999999999999987433 33 2333444332 258999999996 5875442
Q ss_pred CcccCHHHHHHHHHH--hCC-cEEEEeccCCCCCHHHHHHHHHHHHhCC
Q 028595 134 LVPVTTAQGEELRKQ--IGA-SYYIECSSKTQQNVKAVFDAAIKVVIKP 179 (207)
Q Consensus 134 ~~~v~~~~~~~~~~~--~~~-~~~~e~Sa~~~~~i~~~f~~i~~~~~~~ 179 (207)
+..++.+...- ..- -.+..|||.+|+|+.+.++|+.+.+...
T Consensus 265 ----s~~EI~e~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~~k 309 (312)
T 3l2o_B 265 ----PCFYLAHELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESK 309 (312)
T ss_dssp ----CHHHHHHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSCC-
T ss_pred ----CHHHHHHHcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHHhh
Confidence 33332222111 111 1456799999999999999999887544
No 207
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.25 E-value=2.8e-11 Score=97.12 Aligned_cols=139 Identities=12% Similarity=0.058 Sum_probs=89.1
Q ss_pred eeEEEEecccccceeeeeeeccCCCCC-ccccCceeeeeeeEEEECCeEEEEEEEeCCCCccc----ccccc---ceecC
Q 028595 5 AKLACLFATQVTSFLLYVLSVSGRSSI-WDYIPTVFDNFSANVVAEGTTVNLGLWDTAGQEDY----NRLRP---LSYRG 76 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~~~~~-~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~G~~~~----~~~~~---~~~~~ 76 (207)
..|+++|.|||| ||||+|+|++.+.. ..|.-|+.+.....+.+++ ..+.+.||||--.- ..+.. ..++.
T Consensus 73 a~V~ivG~PNvG-KSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~~--~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ 149 (376)
T 4a9a_A 73 ASVGFVGFPSVG-KSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYKG--AKIQMLDLPGIIDGAKDGRGRGKQVIAVART 149 (376)
T ss_dssp EEEEEECCCCHH-HHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEETT--EEEEEEECGGGCCC-----CHHHHHHHHHHH
T ss_pred CeEEEECCCCCC-HHHHHHHHhCCCCcccCCCCceeeeeeEEEEeCC--cEEEEEeCCCccCCchhhhHHHHHHHHHHHh
Confidence 479999999999 99999999987643 3454444444455667777 45789999995322 11222 34567
Q ss_pred CcEEEEEEeCCChhhHHHHHHHHHHHHhhcC---CCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCC
Q 028595 77 ADVFVLAFSLVSRASYENVLKKWIPELQHYS---PGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA 151 (207)
Q Consensus 77 ~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~---~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 151 (207)
+|++++|.|.+++..-... +..++.... .+.|.+++.||.|...-... ..........++.+.+...+.+
T Consensus 150 ad~il~vvD~~~p~~~~~~---i~~EL~~~~~~l~~k~~~i~~nK~d~~gi~i~--~~~~~~~l~~eeik~il~~~~l 222 (376)
T 4a9a_A 150 CNLLFIILDVNKPLHHKQI---IEKELEGVGIRLNKTPPDILIKKKEKGGISIT--NTVPLTHLGNDEIRAVMSEYRI 222 (376)
T ss_dssp CSEEEEEEETTSHHHHHHH---HHHHHHHTTEEETCCCCCEEEEECSSSCEEEE--ESSCCSSCCHHHHHHHHHHTTC
T ss_pred cCccccccccCccHHHHHH---HHHHHHHhhHhhccCChhhhhhHhhhhhhhhh--cchhhhhccHHHHHHHHHHhcc
Confidence 9999999999987543332 333333322 46788899999997532210 1111122356777777776654
No 208
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.21 E-value=5.1e-11 Score=103.45 Aligned_cols=117 Identities=16% Similarity=0.042 Sum_probs=81.3
Q ss_pred ccceeEEEEecccccceeeeeeeccCC--------CCCc--cccCce------eeee-ee--EEEEC-----CeEEEEEE
Q 028595 2 ELLAKLACLFATQVTSFLLYVLSVSGR--------SSIW--DYIPTV------FDNF-SA--NVVAE-----GTTVNLGL 57 (207)
Q Consensus 2 ~~~~ki~iiG~~~~GgKssli~~l~~~--------~~~~--~~~~t~------~~~~-~~--~~~~~-----~~~~~l~i 57 (207)
+...+|+|+|.-.+| ||||..+|+.. +... .+..+. |.+. +. .+... ...+.++|
T Consensus 11 ~~IRNi~IiaHvd~G-KTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNl 89 (709)
T 4fn5_A 11 NRYRNIGICAHVDAG-KTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNV 89 (709)
T ss_dssp GGEEEEEEECCSSSC-HHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEE
T ss_pred HHCeEEEEEcCCCCC-HHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEE
Confidence 456899999999999 99999998621 1110 011110 1111 11 12222 23688999
Q ss_pred EeCCCCccccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCccc
Q 028595 58 WDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRE 123 (207)
Q Consensus 58 ~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~ 123 (207)
+||||+-+|..-....++-+|++|+|+|+...-..+.. ..|...... ++|.+++.||+|...
T Consensus 90 IDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~-~v~~~a~~~---~lp~i~~iNKiDr~~ 151 (709)
T 4fn5_A 90 IDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSE-TVWRQANKY---GVPRIVYVNKMDRQG 151 (709)
T ss_dssp ECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHH-HHHHHHHHH---TCCEEEEEECSSSTT
T ss_pred EeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHH-HHHHHHHHc---CCCeEEEEccccccC
Confidence 99999999999889999999999999999987666655 455554444 899999999999753
No 209
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.19 E-value=3.2e-12 Score=109.62 Aligned_cols=115 Identities=13% Similarity=0.025 Sum_probs=79.8
Q ss_pred ceeEEEEecccccceeeeeeeccC--CCCC------c-----cccCce---eeee-eeEEEECCeEEEEEEEeCCCCccc
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSG--RSSI------W-----DYIPTV---FDNF-SANVVAEGTTVNLGLWDTAGQEDY 66 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~--~~~~------~-----~~~~t~---~~~~-~~~~~~~~~~~~l~i~D~~G~~~~ 66 (207)
..+|+|+|-..+| ||||..+++. +.+. . ++.+.- |.+. +..+.+.-+.+.++|+||||+.+|
T Consensus 2 IRNi~IiaHvD~G-KTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF 80 (638)
T 3j25_A 2 IINIGVLAHVDAG-KTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDF 80 (638)
T ss_dssp CCCCEEECCSTTS-SHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSST
T ss_pred eeEEEEEcCCCCC-HHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHH
Confidence 4689999999999 9999998851 1111 0 111100 1111 112223334477899999999999
Q ss_pred cccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCccc
Q 028595 67 NRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRE 123 (207)
Q Consensus 67 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~ 123 (207)
.......++-+|++|+|+|+.+.-..+.. ..|...... ++|.+++.||.|...
T Consensus 81 ~~Ev~raL~~~DgavlVVDa~~GV~~qT~-~v~~~a~~~---~lp~i~~INKmDr~~ 133 (638)
T 3j25_A 81 LAEVYRSLSVLDGAILLISAKDGVQAQTR-ILFHALRKM---GIPTIFFINKIDQNG 133 (638)
T ss_dssp HHHHHHHHTTCSEEECCEESSCTTCSHHH-HHHHHHHHH---TCSCEECCEECCSSS
T ss_pred HHHHHHHHHHhCEEEEEEeCCCCCcHHHH-HHHHHHHHc---CCCeEEEEecccccc
Confidence 99888999999999999999987555554 444443333 799999999999764
No 210
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.08 E-value=2.2e-11 Score=98.23 Aligned_cols=88 Identities=10% Similarity=-0.032 Sum_probs=49.4
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCe---------------EEEEEEEeCCCCcccc
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGT---------------TVNLGLWDTAGQEDYN 67 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~---------------~~~l~i~D~~G~~~~~ 67 (207)
..+|+++|.+++| ||||+|+|++........|..+... ...+.+++. ...+.+|||||.....
T Consensus 22 ~~kvgIVG~pnvG-KSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~a 100 (396)
T 2ohf_A 22 SLKIGIVGLPNVG-KSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGA 100 (396)
T ss_dssp CCCEEEECCSSSS-HHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC-----
T ss_pred CCEEEEECCCCCC-HHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCccccc
Confidence 4689999999999 9999999998865333333322222 334444442 2358999999987654
Q ss_pred c-------cccceecCCcEEEEEEeCCChhhH
Q 028595 68 R-------LRPLSYRGADVFVLAFSLVSRASY 92 (207)
Q Consensus 68 ~-------~~~~~~~~~d~~i~v~d~~~~~s~ 92 (207)
+ .+..+++++|++++|+|+++.+++
T Consensus 101 s~~~glg~~~l~~ir~aD~Il~VvD~~~~~~i 132 (396)
T 2ohf_A 101 HNGQGLGNAFLSHISACDGIFHLTRAFEDDDI 132 (396)
T ss_dssp ------CCHHHHHHHTSSSEEEEEEC------
T ss_pred chhhHHHHHHHHHHHhcCeEEEEEecCCCcch
Confidence 3 334667899999999999875443
No 211
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.06 E-value=2.7e-10 Score=91.56 Aligned_cols=98 Identities=20% Similarity=0.251 Sum_probs=75.3
Q ss_pred CCccccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHH
Q 028595 62 GQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQ 141 (207)
Q Consensus 62 G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~ 141 (207)
.++.|+++.+++++.++++++|+|+++++ ..|...+.+...+.|+++|+||+|+.+... ..+.
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~------~~~~~~l~~~~~~~p~ilV~NK~DL~~~~~-----------~~~~ 117 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFN------GSWLPGLHRFVGNNKVLLVGNKADLIPKSV-----------KHDK 117 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHH------HHCCTTHHHHSSSSCEEEEEECGGGSCTTS-----------CHHH
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCc------ccHHHHHHHHhCCCcEEEEEEChhcCCccc-----------CHHH
Confidence 56788899999999999999999999864 345555555556899999999999975432 3333
Q ss_pred HHH----HHHHhCCc--EEEEeccCCCCCHHHHHHHHHHHH
Q 028595 142 GEE----LRKQIGAS--YYIECSSKTQQNVKAVFDAAIKVV 176 (207)
Q Consensus 142 ~~~----~~~~~~~~--~~~e~Sa~~~~~i~~~f~~i~~~~ 176 (207)
.++ +++..|.. +++.+||++|.|++++++.+.+..
T Consensus 118 ~~~~l~~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~ 158 (368)
T 3h2y_A 118 VKHWMRYSAKQLGLKPEDVFLISAAKGQGIAELADAIEYYR 158 (368)
T ss_dssp HHHHHHHHHHHTTCCCSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCcccEEEEeCCCCcCHHHHHhhhhhhc
Confidence 333 45666763 789999999999999999997654
No 212
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.01 E-value=1.3e-10 Score=92.42 Aligned_cols=104 Identities=13% Similarity=0.120 Sum_probs=63.2
Q ss_pred EEEEEEeCCCCccccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCC
Q 028595 53 VNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHP 132 (207)
Q Consensus 53 ~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~ 132 (207)
+.+.++||+|..... ......+|.+++++|.+..+..+.+ ... +. ..|.+++.||+|+.+....
T Consensus 148 ~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i-~~~---i~----~~~~ivvlNK~Dl~~~~~~----- 211 (337)
T 2qm8_A 148 FDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGI-KKG---IF----ELADMIAVNKADDGDGERR----- 211 (337)
T ss_dssp CCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------C-CTT---HH----HHCSEEEEECCSTTCCHHH-----
T ss_pred CCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHH-HHH---Hh----ccccEEEEEchhccCchhH-----
Confidence 578899999964321 1234679999999998754332211 111 11 2455777799997543211
Q ss_pred CCcccCHHHHHHHHHHh---C------CcEEEEeccCCCCCHHHHHHHHHHHHh
Q 028595 133 GLVPVTTAQGEELRKQI---G------ASYYIECSSKTQQNVKAVFDAAIKVVI 177 (207)
Q Consensus 133 ~~~~v~~~~~~~~~~~~---~------~~~~~e~Sa~~~~~i~~~f~~i~~~~~ 177 (207)
.....+.+.... . ..+++.+||+++.|++++++.+.+...
T Consensus 212 -----s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 212 -----ASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp -----HHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 222333443322 1 237888999999999999999987653
No 213
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.90 E-value=1.1e-09 Score=88.11 Aligned_cols=99 Identities=16% Similarity=0.218 Sum_probs=73.4
Q ss_pred CCCccccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHH
Q 028595 61 AGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTA 140 (207)
Q Consensus 61 ~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~ 140 (207)
..++.|++..++++.+++++++|+|++++++ .|...+.+...+.|+++|+||+|+.+... ..+
T Consensus 56 ~~~e~f~~~L~~~~~~~~lil~VvD~~d~~~------s~~~~l~~~l~~~piilV~NK~DLl~~~~-----------~~~ 118 (369)
T 3ec1_A 56 LDDDDFLSMLHRIGESKALVVNIVDIFDFNG------SFIPGLPRFAADNPILLVGNKADLLPRSV-----------KYP 118 (369)
T ss_dssp ---CHHHHHHHHHHHHCCEEEEEEETTCSGG------GCCSSHHHHCTTSCEEEEEECGGGSCTTC-----------CHH
T ss_pred CCHHHHHHHHHHhhccCcEEEEEEECCCCCC------chhhHHHHHhCCCCEEEEEEChhcCCCcc-----------CHH
Confidence 4588899999999999999999999999774 23333333345899999999999976432 333
Q ss_pred HHHH----HHHHhCC--cEEEEeccCCCCCHHHHHHHHHHHH
Q 028595 141 QGEE----LRKQIGA--SYYIECSSKTQQNVKAVFDAAIKVV 176 (207)
Q Consensus 141 ~~~~----~~~~~~~--~~~~e~Sa~~~~~i~~~f~~i~~~~ 176 (207)
..++ +++..|. .+++.+||++|.|++++++.+.+..
T Consensus 119 ~~~~~l~~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~ 160 (369)
T 3ec1_A 119 KLLRWMRRMAEELGLCPVDVCLVSAAKGIGMAKVMEAINRYR 160 (369)
T ss_dssp HHHHHHHHHHHTTTCCCSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCcccEEEEECCCCCCHHHHHHHHHhhc
Confidence 3333 3556665 3789999999999999999997654
No 214
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=98.88 E-value=9.3e-09 Score=83.03 Aligned_cols=84 Identities=14% Similarity=0.018 Sum_probs=56.2
Q ss_pred ceeEEEEecccccceeeeeeeccCCCC-CccccCcee-eeeeeEEEECCe---------------EEEEEEEeCCCCccc
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSS-IWDYIPTVF-DNFSANVVAEGT---------------TVNLGLWDTAGQEDY 66 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~-~~~~~~t~~-~~~~~~~~~~~~---------------~~~l~i~D~~G~~~~ 66 (207)
..+++++|.+++| ||||+|+|++... .....|..+ ......+.+++. ...+.+||+||....
T Consensus 20 g~~vgiVG~pnaG-KSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~ 98 (392)
T 1ni3_A 20 NLKTGIVGMPNVG-KSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKG 98 (392)
T ss_dssp CCEEEEEECSSSS-HHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCC
T ss_pred CCEEEEECCCCCC-HHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccC
Confidence 3589999999999 9999999998764 333333222 222334555541 136889999995432
Q ss_pred cc-------cccceecCCcEEEEEEeCCC
Q 028595 67 NR-------LRPLSYRGADVFVLAFSLVS 88 (207)
Q Consensus 67 ~~-------~~~~~~~~~d~~i~v~d~~~ 88 (207)
.+ ....+++.+|+++.|+|+.+
T Consensus 99 ~s~~e~L~~~fl~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 99 ASTGVGLGNAFLSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp CCSSSSSCHHHHHHHTTCSEEEEEEECCC
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 11 22344578999999999864
No 215
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.85 E-value=1.8e-09 Score=83.66 Aligned_cols=101 Identities=15% Similarity=0.101 Sum_probs=69.3
Q ss_pred EEeCCCCc-cccccccceecCCcEEEEEEeCCChhhHHHH-HHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCC
Q 028595 57 LWDTAGQE-DYNRLRPLSYRGADVFVLAFSLVSRASYENV-LKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGL 134 (207)
Q Consensus 57 i~D~~G~~-~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~-~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~ 134 (207)
|-..||+. .........+..+|+++.|+|+.++.+.... ...|+ .+.|.++|+||+|+.+..
T Consensus 3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l-------~~kp~ilVlNK~DL~~~~--------- 66 (282)
T 1puj_A 3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL-------KNKPRIMLLNKADKADAA--------- 66 (282)
T ss_dssp ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC-------SSSCEEEEEECGGGSCHH---------
T ss_pred CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH-------CCCCEEEEEECcccCCHH---------
Confidence 44567865 3334455678889999999999998877531 13332 479999999999996532
Q ss_pred cccCHHHHHHHHHHhCCcEEEEeccCCCCCHHHHHHHHHHHHh
Q 028595 135 VPVTTAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIKVVI 177 (207)
Q Consensus 135 ~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i~~~~~ 177 (207)
..+....+.+..+. +++.+||.++.|++++++.+.+.+.
T Consensus 67 ---~~~~~~~~~~~~g~-~~i~iSA~~~~gi~~L~~~i~~~l~ 105 (282)
T 1puj_A 67 ---VTQQWKEHFENQGI-RSLSINSVNGQGLNQIVPASKEILQ 105 (282)
T ss_dssp ---HHHHHHHHHHTTTC-CEEECCTTTCTTGGGHHHHHHHHHH
T ss_pred ---HHHHHHHHHHhcCC-cEEEEECCCcccHHHHHHHHHHHHH
Confidence 22333444455576 8899999999999999998877664
No 216
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.48 E-value=1.4e-07 Score=73.75 Aligned_cols=96 Identities=24% Similarity=0.222 Sum_probs=66.9
Q ss_pred cccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHH
Q 028595 65 DYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEE 144 (207)
Q Consensus 65 ~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~ 144 (207)
+...+.+..+.++|.+++|.|+.++......+..++...+. .++|.++|.||+|+.+.... ....+...+
T Consensus 75 R~~~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~--~~~~~vivlnK~DL~~~~~~--------~~~~~~~~~ 144 (307)
T 1t9h_A 75 RTNELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA--NDIQPIICITKMDLIEDQDT--------EDTIQAYAE 144 (307)
T ss_dssp CSCEETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHT--TTCEEEEEEECGGGCCCHHH--------HHHHHHHHH
T ss_pred hhhhhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHH--CCCCEEEEEECCccCchhhh--------HHHHHHHHH
Confidence 34455666789999999999999775554455777665544 37999999999999765310 001233444
Q ss_pred HHHHhCCcEEEEeccCCCCCHHHHHHH
Q 028595 145 LRKQIGASYYIECSSKTQQNVKAVFDA 171 (207)
Q Consensus 145 ~~~~~~~~~~~e~Sa~~~~~i~~~f~~ 171 (207)
+.+..|. +.+.+||.++.|+++++..
T Consensus 145 ~y~~~g~-~v~~~sa~~~~g~~~L~~~ 170 (307)
T 1t9h_A 145 DYRNIGY-DVYLTSSKDQDSLADIIPH 170 (307)
T ss_dssp HHHHHTC-CEEECCHHHHTTCTTTGGG
T ss_pred HHHhCCC-eEEEEecCCCCCHHHHHhh
Confidence 4455677 8899999998888776543
No 217
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.39 E-value=5.3e-09 Score=84.10 Aligned_cols=136 Identities=11% Similarity=0.067 Sum_probs=77.9
Q ss_pred eeEEEEecccccceeeeeeeccCC------CCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCcccccc----c---
Q 028595 5 AKLACLFATQVTSFLLYVLSVSGR------SSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRL----R--- 70 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~~------~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~----~--- 70 (207)
.+|+++|.+++| ||||+|++++. .......|. .+. ...+.++.. +.++||||-....++ .
T Consensus 163 ~~i~~vG~~nvG-KStliN~L~~~~~~~~~~~~~~~~~g--tT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~ 236 (369)
T 3ec1_A 163 GDVYVVGCTNVG-KSTFINRIIEEATGKGNVITTSYFPG--TTLDMIEIPLESG---ATLYDTPGIINHHQMAHFVDARD 236 (369)
T ss_dssp SCEEEECCTTSS-HHHHHHHHHHHHHHTTCCCEEEECTT--SSCEEEEEECSTT---CEEEECCSCCCCSSGGGGSCTTT
T ss_pred CcEEEEcCCCCc-hHHHHHHHHhhccCCccceeecCCCC--eEEeeEEEEeCCC---eEEEeCCCcCcHHHHHHHHhHHH
Confidence 479999999999 99999999875 221111121 112 223333332 689999995432211 1
Q ss_pred -ccee--cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHH
Q 028595 71 -PLSY--RGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRK 147 (207)
Q Consensus 71 -~~~~--~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~ 147 (207)
..++ +..+.++++.+..+.--...+ . .+..+.. .+.|++++.||.|..+... .....+.+.+
T Consensus 237 l~~~~~~~~i~~~~~~l~~~~~~~~g~l-~-~l~~l~~--~~~~~~~v~~k~d~~~~~~-----------~~~~~~~~~~ 301 (369)
T 3ec1_A 237 LKIITPKREIHPRVYQLNEGQTLFFGGL-A-RLDYIKG--GRRSFVCYMANELTVHRTK-----------LEKADSLYAN 301 (369)
T ss_dssp HHHHSCSSCCCCEEEEECTTEEEEETTT-E-EEEEEES--SSEEEEEEECTTSCEEEEE-----------GGGHHHHHHH
T ss_pred HHHHhcccccCceEEEEcCCceEEECCE-E-EEEEccC--CCceEEEEecCCccccccc-----------HHHHHHHHHH
Confidence 1111 567889999987432111122 0 1111221 3689999999999876543 3344555666
Q ss_pred HhCCcEEEEeccCCC
Q 028595 148 QIGASYYIECSSKTQ 162 (207)
Q Consensus 148 ~~~~~~~~e~Sa~~~ 162 (207)
.+|. .....++.+.
T Consensus 302 ~~g~-~l~p~~~~~~ 315 (369)
T 3ec1_A 302 QLGE-LLSPPSKRYA 315 (369)
T ss_dssp HBTT-TBCSSCGGGT
T ss_pred hcCC-ccCCCCchhh
Confidence 6765 4445555443
No 218
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.37 E-value=3.5e-09 Score=85.12 Aligned_cols=135 Identities=8% Similarity=-0.012 Sum_probs=74.6
Q ss_pred eeEEEEecccccceeeeeeeccCCCCC-----ccccCceeeee-eeEEEECCeEEEEEEEeCCCCccccccc----c---
Q 028595 5 AKLACLFATQVTSFLLYVLSVSGRSSI-----WDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQEDYNRLR----P--- 71 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~~~~~-----~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~~~~~~~----~--- 71 (207)
.+|+++|.+++| ||||+|++++.... ....+..+.+. ...+.+++. +.++||||-.....+. .
T Consensus 161 ~~i~~vG~~nvG-KStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l 236 (368)
T 3h2y_A 161 KDVYVVGCTNVG-KSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEE---SSLYDTPGIINHHQMAHYVGKQSL 236 (368)
T ss_dssp SCEEEEEBTTSS-HHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSS---CEEEECCCBCCTTSGGGGSCHHHH
T ss_pred ceEEEecCCCCC-hhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCC---eEEEeCCCcCcHHHHHHHhhHHHH
Confidence 479999999999 99999999875311 11111222222 223333332 7899999954322111 1
Q ss_pred -ce--ecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHH
Q 028595 72 -LS--YRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQ 148 (207)
Q Consensus 72 -~~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 148 (207)
.+ .+..+.++++.+..+..-...+ ..+..+.. .+.|++++.||.|..+... .....+.+.+.
T Consensus 237 ~~~~~~~~i~~~~~~l~~~~~~~~g~l--~~~d~l~~--~~~~~~~v~nk~d~~~~~~-----------~~~~~~~~~~~ 301 (368)
T 3h2y_A 237 KLITPTKEIKPMVFQLNEEQTLFFSGL--ARFDYVSG--GRRAFTCHFSNRLTIHRTK-----------LEKADELYKNH 301 (368)
T ss_dssp HHHSCSSCCCCEEEEECTTEEEEETTT--EEEEEEES--SSEEEEEEECTTSCEEEEE-----------HHHHHHHHHHH
T ss_pred HHhccccccCceEEEEcCCCEEEEcce--EEEEEecC--CCceEEEEecCcccccccc-----------HHHHHHHHHHH
Confidence 11 2456788888876432111122 01111221 3689999999999876553 34445556666
Q ss_pred hCCcEEEEecc
Q 028595 149 IGASYYIECSS 159 (207)
Q Consensus 149 ~~~~~~~e~Sa 159 (207)
+|. .....++
T Consensus 302 ~g~-~l~p~~~ 311 (368)
T 3h2y_A 302 AGD-LLSPPTP 311 (368)
T ss_dssp BTT-TBCSSCH
T ss_pred hCC-ccCCCch
Confidence 665 3334443
No 219
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=98.34 E-value=1.2e-06 Score=71.11 Aligned_cols=164 Identities=12% Similarity=0.026 Sum_probs=86.6
Q ss_pred eeEEEEecccccceeeeeeeccCCCCCccccCce-eeee--eeEEEECCeEEEEEEEeCCCCccccccccce-----ecC
Q 028595 5 AKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTV-FDNF--SANVVAEGTTVNLGLWDTAGQEDYNRLRPLS-----YRG 76 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~-~~~~--~~~~~~~~~~~~l~i~D~~G~~~~~~~~~~~-----~~~ 76 (207)
..++++|.+++| ||||+|.+.+-.-...-.-+. +... ...+.-....-.+.+||++|-.........+ +..
T Consensus 70 ~~valvG~nGaG-KSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~ 148 (413)
T 1tq4_A 70 LNVAVTGETGSG-KSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYE 148 (413)
T ss_dssp EEEEEEECTTSS-HHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGGG
T ss_pred eEEEEECCCCCc-HHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccchHHHHHHHHHHcCCCc
Confidence 368999999999 999999998743221110011 1000 0111111111247899999843211111111 233
Q ss_pred CcEEEEEEeCC--ChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCH----HHHHHHHH---
Q 028595 77 ADVFVLAFSLV--SRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTT----AQGEELRK--- 147 (207)
Q Consensus 77 ~d~~i~v~d~~--~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~----~~~~~~~~--- 147 (207)
.+.+++ +|.. .+.... +...+.. .+.|+++|.||.|+.--++.. .++.+... +..+++..
T Consensus 149 ~~~~~~-lS~G~~~kqrv~-----la~aL~~--~~~p~~lV~tkpdlllLDEPt---sgLD~~~~~~l~~~l~~l~~~~l 217 (413)
T 1tq4_A 149 YDFFII-ISATRFKKNDID-----IAKAISM--MKKEFYFVRTKVDSDITNEAD---GEPQTFDKEKVLQDIRLNCVNTF 217 (413)
T ss_dssp CSEEEE-EESSCCCHHHHH-----HHHHHHH--TTCEEEEEECCHHHHHHHHHT---TCCTTCCHHHHHHHHHHHHHHHH
T ss_pred cCCeEE-eCCCCccHHHHH-----HHHHHHh--cCCCeEEEEecCcccccCccc---ccCCHHHHHHHHHHHHHHHHHHH
Confidence 455555 7776 333322 2223322 268999999999964111100 00111122 23334431
Q ss_pred -HhC--CcEEEEecc--CCCCCHHHHHHHHHHHHhCCC
Q 028595 148 -QIG--ASYYIECSS--KTQQNVKAVFDAAIKVVIKPP 180 (207)
Q Consensus 148 -~~~--~~~~~e~Sa--~~~~~i~~~f~~i~~~~~~~~ 180 (207)
+.| ....+.+|+ .++.|++++.+.+.+.+.+.+
T Consensus 218 ~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg~ 255 (413)
T 1tq4_A 218 RENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIYK 255 (413)
T ss_dssp HHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGGG
T ss_pred HhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCccch
Confidence 222 235688999 677789999999998886544
No 220
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.29 E-value=3.9e-06 Score=68.29 Aligned_cols=115 Identities=10% Similarity=0.011 Sum_probs=61.3
Q ss_pred eeEEEEecccccceeeeeeeccCCCCCccccC--ceeeee-eeEEEEC--CeEEEEEEEeCCCCcccc------------
Q 028595 5 AKLACLFATQVTSFLLYVLSVSGRSSIWDYIP--TVFDNF-SANVVAE--GTTVNLGLWDTAGQEDYN------------ 67 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~--t~~~~~-~~~~~~~--~~~~~l~i~D~~G~~~~~------------ 67 (207)
++++++|.+++| ||||+|.+++..+...... +.+... ...+... +-...+.++|++|-....
T Consensus 43 ~~vaLvG~nGaG-KSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~ 121 (427)
T 2qag_B 43 FNILCVGETGLG-KSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEF 121 (427)
T ss_dssp EEEEEECSTTSS-SHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHH
T ss_pred eEEEEECCCCCC-HHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHH
Confidence 469999999999 9999999988754321110 111111 1122222 223478899998743210
Q ss_pred --ccc----cc---------eecCCc---EEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCc
Q 028595 68 --RLR----PL---------SYRGAD---VFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK 125 (207)
Q Consensus 68 --~~~----~~---------~~~~~d---~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~ 125 (207)
..+ .. ...+++ +++|+.|....-+..++ .++..+. .++|+++|.||+|.....
T Consensus 122 i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Di--eilk~L~---~~~~vI~Vi~KtD~Lt~~ 192 (427)
T 2qag_B 122 IDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDL--VTMKKLD---SKVNIIPIIAKADAISKS 192 (427)
T ss_dssp HHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHH--HHHHHTC---SCSEEEEEESCGGGSCHH
T ss_pred HHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHH--HHHHHHh---hCCCEEEEEcchhccchH
Confidence 000 01 122333 35666666554444433 4444443 479999999999986443
No 221
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.24 E-value=1.8e-07 Score=77.80 Aligned_cols=149 Identities=11% Similarity=0.019 Sum_probs=86.0
Q ss_pred ceeEEEEecccccceeeeeeecc------CCCCC----ccccCcee-------eeeeeEEEE--CC--------------
Q 028595 4 LAKLACLFATQVTSFLLYVLSVS------GRSSI----WDYIPTVF-------DNFSANVVA--EG-------------- 50 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~------~~~~~----~~~~~t~~-------~~~~~~~~~--~~-------------- 50 (207)
...|+++|.+++| |||+++.|. +.+.. +.+.|... ......+.. .+
T Consensus 101 ~~vI~ivG~~GvG-KTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~~ 179 (504)
T 2j37_W 101 QNVIMFVGLQGSG-KTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEKF 179 (504)
T ss_dssp -EEEEEECSTTSS-HHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCC-HHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHHH
Confidence 3478999999999 999999998 44321 11111110 000000000 00
Q ss_pred --eEEEEEEEeCCCCccccc-cccc---e--ecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcE-EEEeeCCCc
Q 028595 51 --TTVNLGLWDTAGQEDYNR-LRPL---S--YRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPV-VLVGTKLDL 121 (207)
Q Consensus 51 --~~~~l~i~D~~G~~~~~~-~~~~---~--~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~pi-ivv~nK~D~ 121 (207)
..+.+.|+||||...... +... . +..+|.+++|.|.+....... ....+.. ..|+ .+|.||.|.
T Consensus 180 ~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~~----~a~~~~~---~~~i~gvVlNK~D~ 252 (504)
T 2j37_W 180 KNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACEA----QAKAFKD---KVDVASVIVTKLDG 252 (504)
T ss_dssp HHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHHH----HHHHHHH---HHCCCCEEEECTTS
T ss_pred HHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHHH----HHHHHHh---hcCceEEEEeCCcc
Confidence 236789999999754221 1110 1 226899999999987543222 2233332 2675 899999998
Q ss_pred ccCcccccCCCCCcccCHHHHHHHHHHhCCcEE------------------EEeccCCCCC-HHHHHHHHHHH
Q 028595 122 REDKHYLADHPGLVPVTTAQGEELRKQIGASYY------------------IECSSKTQQN-VKAVFDAAIKV 175 (207)
Q Consensus 122 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~------------------~e~Sa~~~~~-i~~~f~~i~~~ 175 (207)
..... .+.......+. |. ..+|+..|.| +.++++++.+.
T Consensus 253 ~~~~g--------------~~l~~~~~~g~-PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 253 HAKGG--------------GALSAVAATKS-PIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp CCCCT--------------HHHHHHHHHCC-CEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred ccchH--------------HHHHHHHHhCC-CeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 63321 12223344443 22 2368999999 99999988765
No 222
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=98.15 E-value=5e-06 Score=63.89 Aligned_cols=115 Identities=14% Similarity=0.019 Sum_probs=63.3
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCCcc---------ccCceeeeeeeEEEECCe--EEEEEEEeCCCCccccc----
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSIWD---------YIPTVFDNFSANVVAEGT--TVNLGLWDTAGQEDYNR---- 68 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~---------~~~t~~~~~~~~~~~~~~--~~~l~i~D~~G~~~~~~---- 68 (207)
.++++++|.+++| ||||+|.+++...... ..++.. .....+..... ...+.++|++|-.....
T Consensus 2 ~f~v~lvG~nGaG-KSTLln~L~g~~~~~~G~i~~~g~~i~~~~~-~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~ 79 (270)
T 3sop_A 2 DFNIMVVGQSGLG-KSTLVNTLFKSQVSRKASSWNREEKIPKTVE-IKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENC 79 (270)
T ss_dssp EEEEEEEESSSSS-HHHHHHHHHHHHC------------CCCCCS-CCEEEESCC----CCEEEEECCCC--CCSBCTTC
T ss_pred eeEEEEECCCCCC-HHHHHHHHhCCCCCCCCccccCCcccCccee-eeeeEEEeecCCCcCCceEEechhhhhhcccHHH
Confidence 4789999999999 9999999986532211 001100 00111111221 23678999987321100
Q ss_pred ------------------------cccceecCCcEEEEEEeCC-ChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCccc
Q 028595 69 ------------------------LRPLSYRGADVFVLAFSLV-SRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRE 123 (207)
Q Consensus 69 ------------------------~~~~~~~~~d~~i~v~d~~-~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~ 123 (207)
..+..+..+++++++.|-. ..-+..+. .++..+.+ ..++++|.+|+|...
T Consensus 80 ~~~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~--~~l~~L~~---~~~vI~Vi~K~D~lt 154 (270)
T 3sop_A 80 WEPIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDL--EFMKHLSK---VVNIIPVIAKADTMT 154 (270)
T ss_dssp SHHHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHH--HHHHHHHT---TSEEEEEETTGGGSC
T ss_pred HHHHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHH--HHHHHHHh---cCcEEEEEeccccCC
Confidence 0112234468888888844 32222222 34445544 389999999999865
Q ss_pred Cc
Q 028595 124 DK 125 (207)
Q Consensus 124 ~~ 125 (207)
..
T Consensus 155 ~~ 156 (270)
T 3sop_A 155 LE 156 (270)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 223
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.10 E-value=1.2e-06 Score=67.01 Aligned_cols=93 Identities=15% Similarity=0.105 Sum_probs=62.7
Q ss_pred CCCCccc-cccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccC
Q 028595 60 TAGQEDY-NRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVT 138 (207)
Q Consensus 60 ~~G~~~~-~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~ 138 (207)
.||+... .......++++|+++.|+|+.++.+.... . +. .. ++|.++|+||+|+.+.. .
T Consensus 4 ~PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~--~----l~-ll-~k~~iivlNK~DL~~~~------------~ 63 (262)
T 3cnl_A 4 YPGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAY--G----VD-FS-RKETIILLNKVDIADEK------------T 63 (262)
T ss_dssp -----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCT--T----SC-CT-TSEEEEEEECGGGSCHH------------H
T ss_pred CchHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcCh--H----HH-hc-CCCcEEEEECccCCCHH------------H
Confidence 4565432 23445667899999999999998777542 1 11 11 78999999999996532 2
Q ss_pred HHHHHHHHHHhCCcEEEEeccCCCCCHHHHHHHHHH
Q 028595 139 TAQGEELRKQIGASYYIECSSKTQQNVKAVFDAAIK 174 (207)
Q Consensus 139 ~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~f~~i~~ 174 (207)
.+....+.+..|. ++ .+||.++.|++++++.+..
T Consensus 64 ~~~~~~~~~~~g~-~v-~iSa~~~~gi~~L~~~l~~ 97 (262)
T 3cnl_A 64 TKKWVEFFKKQGK-RV-ITTHKGEPRKVLLKKLSFD 97 (262)
T ss_dssp HHHHHHHHHHTTC-CE-EECCTTSCHHHHHHHHCCC
T ss_pred HHHHHHHHHHcCC-eE-EEECCCCcCHHHHHHHHHH
Confidence 2334445555677 67 9999999999999887644
No 224
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.99 E-value=9.3e-07 Score=67.67 Aligned_cols=56 Identities=11% Similarity=-0.037 Sum_probs=35.1
Q ss_pred eeEEEEecccccceeeeeeeccCCCCCccccCceeeeeee-EEEECCeEEEEEEEeCCCCcc
Q 028595 5 AKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSA-NVVAEGTTVNLGLWDTAGQED 65 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~l~i~D~~G~~~ 65 (207)
.+++++|.+++| ||||+|++.+.... .+.++.|.+... .+.++. .+.+|||||...
T Consensus 100 ~~v~~vG~~~vG-KSslin~l~~~~~~-~~~~~~g~T~~~~~~~~~~---~~~l~DtpG~~~ 156 (262)
T 3cnl_A 100 ARVLIVGVPNTG-KSTIINKLKGKRAS-SVGAQPGITKGIQWFSLEN---GVKILDTPGILY 156 (262)
T ss_dssp CEEEEEESTTSS-HHHHHHHHHTTCC-----------CCSCEEECTT---SCEEESSCEECC
T ss_pred hheEEeCCCCCC-HHHHHHHHhccccc-ccCCCCCCccceEEEEeCC---CEEEEECCCccc
Confidence 589999999999 99999999987643 233444443322 233232 478999999654
No 225
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=97.98 E-value=1.9e-06 Score=66.69 Aligned_cols=56 Identities=13% Similarity=-0.099 Sum_probs=34.4
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCCccccCceeeee-eeEEEECCeEEEEEEEeCCCCc
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNF-SANVVAEGTTVNLGLWDTAGQE 64 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~G~~ 64 (207)
..+++++|.++|| ||||+|++.+..... ..++.+.+. ...+.++. .+.+|||||--
T Consensus 120 ~~~v~~vG~~nvG-KSsliN~l~~~~~~~-~~~~~g~T~~~~~~~~~~---~~~l~DtpG~~ 176 (282)
T 1puj_A 120 AIRALIIGIPNVG-KSTLINRLAKKNIAK-TGDRPGITTSQQWVKVGK---ELELLDTPGIL 176 (282)
T ss_dssp CEEEEEEESTTSS-HHHHHHHHHTSCCC-------------CCEEETT---TEEEEECCCCC
T ss_pred CceEEEEecCCCc-hHHHHHHHhcCceee-cCCCCCeeeeeEEEEeCC---CEEEEECcCcC
Confidence 3589999999999 999999999876321 122222222 11233332 47899999964
No 226
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.94 E-value=5.3e-05 Score=60.38 Aligned_cols=87 Identities=20% Similarity=0.253 Sum_probs=58.6
Q ss_pred ceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcccccCCCCCcccCHHHHHHHHHHhCC
Q 028595 72 LSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHYLADHPGLVPVTTAQGEELRKQIGA 151 (207)
Q Consensus 72 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 151 (207)
....++|.+++|.+.. +......+..|+...+.. ++|.+||+||+|+.+.... ...+......+..|+
T Consensus 126 ~i~anvD~v~iv~a~~-P~~~~~~i~r~L~~a~~~--~~~~iivlNK~DL~~~~~~---------~~~~~~~~~y~~~G~ 193 (358)
T 2rcn_A 126 PIAANIDQIVIVSAIL-PELSLNIIDRYLVGCETL--QVEPLIVLNKIDLLDDEGM---------DFVNEQMDIYRNIGY 193 (358)
T ss_dssp EEEECCCEEEEEEEST-TTCCHHHHHHHHHHHHHH--TCEEEEEEECGGGCCHHHH---------HHHHHHHHHHHTTTC
T ss_pred HHHhcCCEEEEEEeCC-CCCCHHHHHHHHHHHHhc--CCCEEEEEECccCCCchhH---------HHHHHHHHHHHhCCC
Confidence 3578999999997764 544444446666554443 7888999999999754310 011223333345677
Q ss_pred cEEEEeccCCCCCHHHHHHH
Q 028595 152 SYYIECSSKTQQNVKAVFDA 171 (207)
Q Consensus 152 ~~~~e~Sa~~~~~i~~~f~~ 171 (207)
+.+.+||.++.|++++...
T Consensus 194 -~v~~~Sa~~~~gl~~L~~~ 212 (358)
T 2rcn_A 194 -RVLMVSSHTQDGLKPLEEA 212 (358)
T ss_dssp -CEEECBTTTTBTHHHHHHH
T ss_pred -cEEEEecCCCcCHHHHHHh
Confidence 7899999999999988764
No 227
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=97.63 E-value=1.6e-05 Score=67.31 Aligned_cols=61 Identities=16% Similarity=0.050 Sum_probs=38.0
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCCccccCce-eeeeeeEEE---E-CCeEEEEEEEeCCCCcc
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTV-FDNFSANVV---A-EGTTVNLGLWDTAGQED 65 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~-~~~~~~~~~---~-~~~~~~l~i~D~~G~~~ 65 (207)
...|+++|.+++| ||||+|+|++......+..|. +.+...... + ......+.++||||-..
T Consensus 38 ~~~VaivG~pnvG-KStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~ 103 (592)
T 1f5n_A 38 MVVVAIVGLYRTG-KSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD 103 (592)
T ss_dssp EEEEEEEEBTTSS-HHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred CcEEEEECCCCCC-HHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCc
Confidence 3578999999999 999999999886432222222 111111111 1 12234678999999653
No 228
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.45 E-value=8.6e-05 Score=60.75 Aligned_cols=86 Identities=16% Similarity=0.046 Sum_probs=50.7
Q ss_pred EEEEEEeCCCCccccc-ccc-----ceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCcc
Q 028595 53 VNLGLWDTAGQEDYNR-LRP-----LSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKH 126 (207)
Q Consensus 53 ~~l~i~D~~G~~~~~~-~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~ 126 (207)
+.+.|+||+|...... +.. .....+|.+++|.|.+........ ...+... -.+..+|.||.|....
T Consensus 183 ~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~----a~~f~~~--~~i~gVIlTKlD~~~~-- 254 (443)
T 3dm5_A 183 VDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQ----ALAFKEA--TPIGSIIVTKLDGSAK-- 254 (443)
T ss_dssp CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHH----HHHHHHS--CTTEEEEEECCSSCSS--
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHH----HHHHHhh--CCCeEEEEECCCCccc--
Confidence 6788999999543221 100 112357899999998875443332 2333321 2345699999997532
Q ss_pred cccCCCCCcccCHHHHHHHHHHhCCcEEEEecc
Q 028595 127 YLADHPGLVPVTTAQGEELRKQIGASYYIECSS 159 (207)
Q Consensus 127 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa 159 (207)
...+..+....+. |+..++.
T Consensus 255 ------------gG~~ls~~~~~g~-PI~fig~ 274 (443)
T 3dm5_A 255 ------------GGGALSAVAATGA-PIKFIGT 274 (443)
T ss_dssp ------------HHHHHHHHHTTCC-CEEEEEC
T ss_pred ------------ccHHHHHHHHHCC-CEEEEEc
Confidence 2334555666776 6655554
No 229
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=97.33 E-value=2.4e-05 Score=64.04 Aligned_cols=64 Identities=19% Similarity=0.148 Sum_probs=39.2
Q ss_pred EEEEEEEeCCCCccccc-cc-----cceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCC-c-EEEEeeCCCcc
Q 028595 52 TVNLGLWDTAGQEDYNR-LR-----PLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGV-P-VVLVGTKLDLR 122 (207)
Q Consensus 52 ~~~l~i~D~~G~~~~~~-~~-----~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~-p-iivv~nK~D~~ 122 (207)
.+.+.|+||||...... +. -..+..+|.+++|.|.+...... .....+. +.. | ..+|.||.|..
T Consensus 180 ~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~~~----~~~~~~~---~~~~~i~gvVlnK~D~~ 251 (432)
T 2v3c_C 180 KADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQAG----IQAKAFK---EAVGEIGSIIVTKLDGS 251 (432)
T ss_dssp SCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGGHH----HHHHHHH---TTSCSCEEEEEECSSSC
T ss_pred CCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHHHH----HHHHHHh---hcccCCeEEEEeCCCCc
Confidence 35678999999654211 10 01123689999999987654221 2223332 245 6 78999999974
No 230
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=96.90 E-value=0.00017 Score=61.66 Aligned_cols=23 Identities=13% Similarity=0.023 Sum_probs=20.7
Q ss_pred eEEEEecccccceeeeeeeccCCC
Q 028595 6 KLACLFATQVTSFLLYVLSVSGRS 29 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~~~ 29 (207)
.++++|.+++| ||||++.+.+-.
T Consensus 47 ~iaIvG~nGsG-KSTLL~~I~Gl~ 69 (608)
T 3szr_A 47 AIAVIGDQSSG-KSSVLEALSGVA 69 (608)
T ss_dssp CEECCCCTTSC-HHHHHHHHHSCC
T ss_pred eEEEECCCCCh-HHHHHHHHhCCC
Confidence 48999999999 999999998763
No 231
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=96.87 E-value=8e-06 Score=67.65 Aligned_cols=107 Identities=9% Similarity=-0.057 Sum_probs=62.3
Q ss_pred ceeEEEEecccccceeeeeeeccCCCCCccccCceeeeee-eEEEECCeEEEEEEEeCCCCc--cccccc--------cc
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFS-ANVVAEGTTVNLGLWDTAGQE--DYNRLR--------PL 72 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~D~~G~~--~~~~~~--------~~ 72 (207)
..+|+++|.+++| |||+.++|...-. ....++.+.... ......+......+||..|++ +.+..+ ..
T Consensus 39 ~~~IvlvGlpGsG-KSTia~~La~~l~-~~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~~ 116 (469)
T 1bif_A 39 PTLIVMVGLPARG-KTYISKKLTRYLN-FIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVRK 116 (469)
T ss_dssp CEEEEEECCTTSS-HHHHHHHHHHHHH-HTTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCC-HHHHHHHHHHHHh-ccCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 4589999999999 9999999875421 112223221100 000011112334689998873 223333 55
Q ss_pred eecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEe
Q 028595 73 SYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVG 116 (207)
Q Consensus 73 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~ 116 (207)
++..+.+.++|+|.++. +.... ..|...+.+. ..+++.+-
T Consensus 117 ~l~~~~G~~vV~D~tn~-~~~~R-~~~~~~~~~~--~~~vv~l~ 156 (469)
T 1bif_A 117 FLSEEGGHVAVFDATNT-TRERR-AMIFNFGEQN--GYKTFFVE 156 (469)
T ss_dssp HHHTTCCSEEEEESCCC-SHHHH-HHHHHHHHHH--TCEEEEEE
T ss_pred HHHhCCCCEEEEeCCCC-CHHHH-HHHHHHHHhc--CCcEEEEE
Confidence 66677888999999987 44444 6676666553 34444433
No 232
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.82 E-value=0.00071 Score=52.55 Aligned_cols=92 Identities=14% Similarity=0.078 Sum_probs=55.3
Q ss_pred EEEEEEEeCCCCcc--cc-cccc-----ceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCc-EEEEeeCCCcc
Q 028595 52 TVNLGLWDTAGQED--YN-RLRP-----LSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVP-VVLVGTKLDLR 122 (207)
Q Consensus 52 ~~~l~i~D~~G~~~--~~-~~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~p-iivv~nK~D~~ 122 (207)
.+.+.|+||||... .. .+.. .....+|.+++|.|.+...... .....+.. ..| ..+|.||.|..
T Consensus 180 ~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~~~~----~~~~~~~~---~~~i~gvVlnk~D~~ 252 (297)
T 1j8m_F 180 KMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKAY----DLASKFNQ---ASKIGTIIITKMDGT 252 (297)
T ss_dssp TCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHH----HHHHHHHH---TCTTEEEEEECGGGC
T ss_pred CCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchHHHH----HHHHHHHh---hCCCCEEEEeCCCCC
Confidence 35788999999765 21 1111 1234689999999987532221 22233332 456 67899999964
Q ss_pred cCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCCCCCHHH
Q 028595 123 EDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVKA 167 (207)
Q Consensus 123 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~ 167 (207)
. ....+..++...+. |...++ +|+++++
T Consensus 253 ~--------------~~g~~~~~~~~~~~-pi~~i~--~Ge~v~d 280 (297)
T 1j8m_F 253 A--------------KGGGALSAVAATGA-TIKFIG--TGEKIDE 280 (297)
T ss_dssp T--------------THHHHHHHHHTTTC-CEEEEE--CSSSTTC
T ss_pred c--------------chHHHHHHHHHHCc-CEEEEe--CCCChhh
Confidence 2 23345667777887 665555 4555543
No 233
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.54 E-value=0.00029 Score=57.57 Aligned_cols=91 Identities=13% Similarity=0.077 Sum_probs=54.0
Q ss_pred EEEEEEEeCCCCcc--ccc-ccc-----ceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCccc
Q 028595 52 TVNLGLWDTAGQED--YNR-LRP-----LSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRE 123 (207)
Q Consensus 52 ~~~l~i~D~~G~~~--~~~-~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~ 123 (207)
.+.+.|.||||... ... +.. ......+.+++|.|.+........ ...+.+. -.+..+|.||.|...
T Consensus 179 ~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~----a~~f~~~--~~~~gVIlTKlD~~a 252 (433)
T 3kl4_A 179 KMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDL----ASRFHQA--SPIGSVIITKMDGTA 252 (433)
T ss_dssp TCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHH----HHHHHHH--CSSEEEEEECGGGCS
T ss_pred CCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHH----HHHHhcc--cCCcEEEEecccccc
Confidence 35678999999543 111 110 011246899999999875443333 2233221 245789999999753
Q ss_pred CcccccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCCCCCH
Q 028595 124 DKHYLADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNV 165 (207)
Q Consensus 124 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~i 165 (207)
....+.......+. |+..++. |+++
T Consensus 253 --------------~~G~als~~~~~g~-Pi~fig~--Ge~v 277 (433)
T 3kl4_A 253 --------------KGGGALSAVVATGA-TIKFIGT--GEKI 277 (433)
T ss_dssp --------------CHHHHHHHHHHHTC-EEEEEEC--CSSS
T ss_pred --------------cchHHHHHHHHHCC-CEEEEEC--CCCh
Confidence 23445666667787 7766665 5554
No 234
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=96.32 E-value=0.0011 Score=54.27 Aligned_cols=22 Identities=5% Similarity=-0.224 Sum_probs=19.6
Q ss_pred eeEEEEecccccceeeeeeeccC
Q 028595 5 AKLACLFATQVTSFLLYVLSVSG 27 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~ 27 (207)
.-|.|+|.+++| ||+|+|.+++
T Consensus 68 ~vVsV~G~~~~G-KStLLN~llg 89 (447)
T 3q5d_A 68 VAVSVAGAFRKG-KSFLMDFMLR 89 (447)
T ss_dssp EEEEEEESTTSS-HHHHHHHHHH
T ss_pred EEEEEECCCCCc-HHHHHHHHhh
Confidence 358899999999 9999999985
No 235
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.03 E-value=0.0023 Score=46.52 Aligned_cols=26 Identities=4% Similarity=-0.248 Sum_probs=20.2
Q ss_pred CccceeEEEEecccccceeeeeeeccC
Q 028595 1 MELLAKLACLFATQVTSFLLYVLSVSG 27 (207)
Q Consensus 1 m~~~~ki~iiG~~~~GgKssli~~l~~ 27 (207)
|.....++++|.+++| ||||++.+.+
T Consensus 1 m~~g~~i~lvGpsGaG-KSTLl~~L~~ 26 (198)
T 1lvg_A 1 MAGPRPVVLSGPSGAG-KSTLLKKLFQ 26 (198)
T ss_dssp ----CCEEEECCTTSS-HHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCC-HHHHHHHHHh
Confidence 5555679999999999 9999999875
No 236
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=94.39 E-value=0.0045 Score=44.23 Aligned_cols=22 Identities=18% Similarity=0.010 Sum_probs=19.6
Q ss_pred eEEEEecccccceeeeeeeccCC
Q 028595 6 KLACLFATQVTSFLLYVLSVSGR 28 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~~ 28 (207)
+++++|.+++| ||||++.+.+.
T Consensus 2 ~i~l~G~nGsG-KTTLl~~l~g~ 23 (178)
T 1ye8_A 2 KIIITGEPGVG-KTTLVKKIVER 23 (178)
T ss_dssp EEEEECCTTSS-HHHHHHHHHHH
T ss_pred EEEEECCCCCC-HHHHHHHHHHH
Confidence 68999999999 99999988754
No 237
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=94.23 E-value=0.0061 Score=42.82 Aligned_cols=27 Identities=4% Similarity=-0.199 Sum_probs=21.5
Q ss_pred CccceeEEEEecccccceeeeeeeccCC
Q 028595 1 MELLAKLACLFATQVTSFLLYVLSVSGR 28 (207)
Q Consensus 1 m~~~~ki~iiG~~~~GgKssli~~l~~~ 28 (207)
|.....|+++|.+++| |||+.+.+.+.
T Consensus 1 m~~~~~i~l~G~~GsG-KSTl~~~La~~ 27 (173)
T 1kag_A 1 MAEKRNIFLVGPMGAG-KSTIGRQLAQQ 27 (173)
T ss_dssp --CCCCEEEECCTTSC-HHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCC-HHHHHHHHHHH
Confidence 5555679999999999 99999998653
No 238
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=93.98 E-value=0.043 Score=39.41 Aligned_cols=65 Identities=11% Similarity=0.035 Sum_probs=45.8
Q ss_pred EEEEEEeCCCCccccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhc---CCCCcEEEEeeCCCcc
Q 028595 53 VNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHY---SPGVPVVLVGTKLDLR 122 (207)
Q Consensus 53 ~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~---~~~~piivv~nK~D~~ 122 (207)
+.+.|+|+|+... ......+..+|.++++...+... ..+ ..+++.+... .++.++.+|.|+.|..
T Consensus 76 yD~viiD~~~~~~--~~~~~~l~~ad~viiv~~~~~~~--~~~-~~~~~~l~~~~~~~~~~~~~vv~N~~~~~ 143 (206)
T 4dzz_A 76 YDFAIVDGAGSLS--VITSAAVMVSDLVIIPVTPSPLD--FSA-AGSVVTVLEAQAYSRKVEARFLITRKIEM 143 (206)
T ss_dssp SSEEEEECCSSSS--HHHHHHHHHCSEEEEEECSCTTT--HHH-HHHHHHHHTTSCGGGCCEEEEEECSBCTT
T ss_pred CCEEEEECCCCCC--HHHHHHHHHCCEEEEEecCCHHH--HHH-HHHHHHHHHHHHhCCCCcEEEEEeccCCC
Confidence 6788999998652 33345566799999999876554 444 5566666543 2467889999999853
No 239
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=93.94 E-value=0.0071 Score=42.70 Aligned_cols=26 Identities=8% Similarity=-0.055 Sum_probs=19.7
Q ss_pred CccceeEEEEecccccceeeeeeeccC
Q 028595 1 MELLAKLACLFATQVTSFLLYVLSVSG 27 (207)
Q Consensus 1 m~~~~ki~iiG~~~~GgKssli~~l~~ 27 (207)
|+.+.+|+++|.+++| |||+.+.|..
T Consensus 1 ~~~m~~i~i~G~~GsG-KsTla~~La~ 26 (175)
T 1via_A 1 MSLAKNIVFIGFMGSG-KSTLARALAK 26 (175)
T ss_dssp ----CCEEEECCTTSC-HHHHHHHHHH
T ss_pred CCCCCEEEEEcCCCCC-HHHHHHHHHH
Confidence 6666689999999999 9999998853
No 240
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=93.89 E-value=0.0059 Score=43.47 Aligned_cols=22 Identities=18% Similarity=-0.069 Sum_probs=19.4
Q ss_pred eEEEEecccccceeeeeeeccCC
Q 028595 6 KLACLFATQVTSFLLYVLSVSGR 28 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~~ 28 (207)
-++++|.+++| ||||++.+.+.
T Consensus 7 ~i~i~GpsGsG-KSTL~~~L~~~ 28 (180)
T 1kgd_A 7 TLVLLGAHGVG-RRHIKNTLITK 28 (180)
T ss_dssp EEEEECCTTSS-HHHHHHHHHHH
T ss_pred EEEEECCCCCC-HHHHHHHHHhh
Confidence 57899999999 99999998753
No 241
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=93.82 E-value=0.0076 Score=43.54 Aligned_cols=24 Identities=4% Similarity=-0.183 Sum_probs=20.3
Q ss_pred ceeEEEEecccccceeeeeeeccCC
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGR 28 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~ 28 (207)
.--++++|++++| ||||++.+.+.
T Consensus 7 g~ii~l~Gp~GsG-KSTl~~~L~~~ 30 (205)
T 3tr0_A 7 ANLFIISAPSGAG-KTSLVRALVKA 30 (205)
T ss_dssp CCEEEEECCTTSC-HHHHHHHHHHH
T ss_pred CcEEEEECcCCCC-HHHHHHHHHhh
Confidence 3458999999999 99999998754
No 242
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=93.56 E-value=0.011 Score=43.38 Aligned_cols=26 Identities=0% Similarity=-0.197 Sum_probs=21.4
Q ss_pred CccceeEEEEecccccceeeeeeeccC
Q 028595 1 MELLAKLACLFATQVTSFLLYVLSVSG 27 (207)
Q Consensus 1 m~~~~ki~iiG~~~~GgKssli~~l~~ 27 (207)
|.....|+++|++++| |||+.+.+.+
T Consensus 2 m~~~~~i~i~G~~GsG-KSTl~~~L~~ 27 (227)
T 1cke_A 2 TAIAPVITIDGPSGAG-KGTLCKAMAE 27 (227)
T ss_dssp -CCSCEEEEECCTTSS-HHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCC-HHHHHHHHHH
Confidence 4444679999999999 9999998864
No 243
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=93.53 E-value=0.0088 Score=44.20 Aligned_cols=27 Identities=4% Similarity=-0.183 Sum_probs=21.2
Q ss_pred CccceeEEEEecccccceeeeeeeccCC
Q 028595 1 MELLAKLACLFATQVTSFLLYVLSVSGR 28 (207)
Q Consensus 1 m~~~~ki~iiG~~~~GgKssli~~l~~~ 28 (207)
|+.---++++|.+++| ||||++.+.+.
T Consensus 13 ~~~G~ii~l~GpsGsG-KSTLlk~L~g~ 39 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAG-KSSLIQALLKT 39 (219)
T ss_dssp --CCCEEEEECCTTSC-HHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCC-HHHHHHHHhcc
Confidence 4444568999999999 99999998754
No 244
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=93.49 E-value=0.011 Score=42.95 Aligned_cols=26 Identities=15% Similarity=-0.012 Sum_probs=22.1
Q ss_pred CccceeEEEEecccccceeeeeeeccC
Q 028595 1 MELLAKLACLFATQVTSFLLYVLSVSG 27 (207)
Q Consensus 1 m~~~~ki~iiG~~~~GgKssli~~l~~ 27 (207)
|....-|+++|.+++| ||||++.|..
T Consensus 9 ~~~~~~i~l~G~sGsG-KsTl~~~L~~ 34 (204)
T 2qor_A 9 MARIPPLVVCGPSGVG-KGTLIKKVLS 34 (204)
T ss_dssp CCCCCCEEEECCTTSC-HHHHHHHHHH
T ss_pred cccCCEEEEECCCCCC-HHHHHHHHHH
Confidence 5556678999999999 9999999864
No 245
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=93.48 E-value=0.0077 Score=43.08 Aligned_cols=21 Identities=0% Similarity=-0.200 Sum_probs=18.6
Q ss_pred EEEEecccccceeeeeeeccCC
Q 028595 7 LACLFATQVTSFLLYVLSVSGR 28 (207)
Q Consensus 7 i~iiG~~~~GgKssli~~l~~~ 28 (207)
++++|++++| ||||++.+.+.
T Consensus 4 i~l~GpsGaG-KsTl~~~L~~~ 24 (186)
T 3a00_A 4 IVISGPSGTG-KSTLLKKLFAE 24 (186)
T ss_dssp EEEESSSSSS-HHHHHHHHHHH
T ss_pred EEEECCCCCC-HHHHHHHHHhh
Confidence 6899999999 99999998743
No 246
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=93.18 E-value=0.0093 Score=43.43 Aligned_cols=22 Identities=14% Similarity=-0.084 Sum_probs=19.2
Q ss_pred eEEEEecccccceeeeeeeccCC
Q 028595 6 KLACLFATQVTSFLLYVLSVSGR 28 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~~ 28 (207)
-++++|.+++| ||||++.+.+-
T Consensus 22 i~~l~GpnGsG-KSTLl~~l~gl 43 (207)
T 1znw_A 22 VVVLSGPSAVG-KSTVVRCLRER 43 (207)
T ss_dssp EEEEECSTTSS-HHHHHHHHHHH
T ss_pred EEEEECCCCCC-HHHHHHHHHhh
Confidence 47899999999 99999998754
No 247
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=93.15 E-value=0.0084 Score=46.70 Aligned_cols=23 Identities=9% Similarity=-0.161 Sum_probs=19.5
Q ss_pred eEEEEecccccceeeeeeeccCCC
Q 028595 6 KLACLFATQVTSFLLYVLSVSGRS 29 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~~~ 29 (207)
.++++|.+++| ||||+|.+.+..
T Consensus 175 ~~~lvG~sG~G-KSTLln~L~g~~ 197 (307)
T 1t9h_A 175 TTVFAGQSGVG-KSSLLNAISPEL 197 (307)
T ss_dssp EEEEEESHHHH-HHHHHHHHCC--
T ss_pred EEEEECCCCCC-HHHHHHHhcccc
Confidence 57999999999 999999998653
No 248
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=93.11 E-value=0.016 Score=41.80 Aligned_cols=27 Identities=7% Similarity=-0.154 Sum_probs=23.2
Q ss_pred CccceeEEEEecccccceeeeeeeccCC
Q 028595 1 MELLAKLACLFATQVTSFLLYVLSVSGR 28 (207)
Q Consensus 1 m~~~~ki~iiG~~~~GgKssli~~l~~~ 28 (207)
|.....|++.|.+++| |||+.+.|...
T Consensus 1 m~~~~~I~l~G~~GsG-KsT~~~~L~~~ 27 (204)
T 2v54_A 1 MSRGALIVFEGLDKSG-KTTQCMNIMES 27 (204)
T ss_dssp CCCCCEEEEECCTTSS-HHHHHHHHHHT
T ss_pred CCCCcEEEEEcCCCCC-HHHHHHHHHHH
Confidence 6666789999999999 99999998654
No 249
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=93.08 E-value=0.012 Score=41.53 Aligned_cols=21 Identities=0% Similarity=-0.219 Sum_probs=17.8
Q ss_pred eEEEEecccccceeeeeeeccC
Q 028595 6 KLACLFATQVTSFLLYVLSVSG 27 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~ 27 (207)
-++++|.+++| ||||++.+..
T Consensus 11 i~~l~G~nGsG-KSTl~~~~~~ 31 (171)
T 4gp7_A 11 LVVLIGSSGSG-KSTFAKKHFK 31 (171)
T ss_dssp EEEEECCTTSC-HHHHHHHHSC
T ss_pred EEEEECCCCCC-HHHHHHHHcc
Confidence 47899999999 9999998653
No 250
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=93.03 E-value=0.013 Score=46.57 Aligned_cols=23 Identities=9% Similarity=-0.184 Sum_probs=20.6
Q ss_pred eEEEEecccccceeeeeeeccCCC
Q 028595 6 KLACLFATQVTSFLLYVLSVSGRS 29 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~~~ 29 (207)
.++++|.+++| ||||+|.+.+..
T Consensus 217 ~~~lvG~sG~G-KSTLln~L~g~~ 239 (358)
T 2rcn_A 217 ISIFAGQSGVG-KSSLLNALLGLQ 239 (358)
T ss_dssp EEEEECCTTSS-HHHHHHHHHCCS
T ss_pred EEEEECCCCcc-HHHHHHHHhccc
Confidence 57899999999 999999998764
No 251
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=93.01 E-value=0.018 Score=41.01 Aligned_cols=23 Identities=4% Similarity=-0.288 Sum_probs=20.2
Q ss_pred eeEEEEecccccceeeeeeeccCC
Q 028595 5 AKLACLFATQVTSFLLYVLSVSGR 28 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~~ 28 (207)
.-++++|.+++| ||||++.+.+.
T Consensus 10 ~~i~l~G~~GsG-KSTl~~~La~~ 32 (191)
T 1zp6_A 10 NILLLSGHPGSG-KSTIAEALANL 32 (191)
T ss_dssp EEEEEEECTTSC-HHHHHHHHHTC
T ss_pred eEEEEECCCCCC-HHHHHHHHHhc
Confidence 458899999999 99999999765
No 252
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=92.93 E-value=0.011 Score=43.58 Aligned_cols=23 Identities=9% Similarity=-0.154 Sum_probs=19.8
Q ss_pred eeEEEEecccccceeeeeeeccCC
Q 028595 5 AKLACLFATQVTSFLLYVLSVSGR 28 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~~ 28 (207)
-.++++|.+++| ||||++.+.+.
T Consensus 24 ~~~~lvGpsGsG-KSTLl~~L~g~ 46 (218)
T 1z6g_A 24 YPLVICGPSGVG-KGTLIKKLLNE 46 (218)
T ss_dssp CCEEEECSTTSS-HHHHHHHHHHH
T ss_pred CEEEEECCCCCC-HHHHHHHHHhh
Confidence 357899999999 99999998763
No 253
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=92.91 E-value=0.018 Score=42.60 Aligned_cols=22 Identities=5% Similarity=-0.215 Sum_probs=14.5
Q ss_pred eEEEEecccccceeeeeeecc-CC
Q 028595 6 KLACLFATQVTSFLLYVLSVS-GR 28 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~-~~ 28 (207)
-++++|++++| ||||++.+. +.
T Consensus 29 ii~l~Gp~GsG-KSTl~~~L~~~~ 51 (231)
T 3lnc_A 29 ILVLSSPSGCG-KTTVANKLLEKQ 51 (231)
T ss_dssp EEEEECSCC-----CHHHHHHC--
T ss_pred EEEEECCCCCC-HHHHHHHHHhcC
Confidence 47899999999 999999998 54
No 254
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=92.89 E-value=0.015 Score=43.46 Aligned_cols=22 Identities=0% Similarity=-0.236 Sum_probs=19.4
Q ss_pred eEEEEecccccceeeeeeeccCC
Q 028595 6 KLACLFATQVTSFLLYVLSVSGR 28 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~~ 28 (207)
-++++|.+++| ||||++.+.+-
T Consensus 33 ~~~iiG~nGsG-KSTLl~~l~Gl 54 (235)
T 3tif_A 33 FVSIMGPSGSG-KSTMLNIIGCL 54 (235)
T ss_dssp EEEEECSTTSS-HHHHHHHHTTS
T ss_pred EEEEECCCCCc-HHHHHHHHhcC
Confidence 47899999999 99999998754
No 255
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=92.88 E-value=0.029 Score=45.84 Aligned_cols=64 Identities=17% Similarity=0.136 Sum_probs=37.5
Q ss_pred EEEEEEEeCCCCccccc-ccc-----ceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcE-EEEeeCCCcc
Q 028595 52 TVNLGLWDTAGQEDYNR-LRP-----LSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPV-VLVGTKLDLR 122 (207)
Q Consensus 52 ~~~l~i~D~~G~~~~~~-~~~-----~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~pi-ivv~nK~D~~ 122 (207)
.+.+.|+||||...... +.. .....++.+++|.|.+....... ....+.. ..|+ -+|.||.|..
T Consensus 183 ~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~~~~~----~~~~f~~---~l~i~gvVlnK~D~~ 253 (433)
T 2xxa_A 183 FYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQDAAN----TAKAFNE---ALPLTGVVLTKVDGD 253 (433)
T ss_dssp TCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCTTHHH----HHHHHHH---HSCCCCEEEECTTSS
T ss_pred CCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhHHHHH----HHHHHhc---cCCCeEEEEecCCCC
Confidence 36788999999644321 111 11336789999999875433222 2223322 3443 4789999974
No 256
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=92.84 E-value=0.013 Score=42.71 Aligned_cols=23 Identities=9% Similarity=-0.214 Sum_probs=19.8
Q ss_pred eeEEEEecccccceeeeeeeccCC
Q 028595 5 AKLACLFATQVTSFLLYVLSVSGR 28 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~~ 28 (207)
..|+++|.+++| ||||++.+.+.
T Consensus 23 ~~v~I~G~sGsG-KSTl~~~l~~~ 45 (208)
T 3c8u_A 23 QLVALSGAPGSG-KSTLSNPLAAA 45 (208)
T ss_dssp EEEEEECCTTSC-THHHHHHHHHH
T ss_pred eEEEEECCCCCC-HHHHHHHHHHH
Confidence 468999999999 99999988643
No 257
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=92.80 E-value=0.016 Score=42.92 Aligned_cols=22 Identities=5% Similarity=-0.212 Sum_probs=19.3
Q ss_pred eEEEEecccccceeeeeeeccCC
Q 028595 6 KLACLFATQVTSFLLYVLSVSGR 28 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~~ 28 (207)
-++++|.+++| ||||++.+.+-
T Consensus 32 ~~~iiG~nGsG-KSTLl~~l~Gl 53 (224)
T 2pcj_A 32 FVSIIGASGSG-KSTLLYILGLL 53 (224)
T ss_dssp EEEEEECTTSC-HHHHHHHHTTS
T ss_pred EEEEECCCCCC-HHHHHHHHhcC
Confidence 47899999999 99999998754
No 258
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=92.67 E-value=0.018 Score=40.83 Aligned_cols=26 Identities=8% Similarity=-0.123 Sum_probs=21.0
Q ss_pred CccceeEEEEecccccceeeeeeeccC
Q 028595 1 MELLAKLACLFATQVTSFLLYVLSVSG 27 (207)
Q Consensus 1 m~~~~ki~iiG~~~~GgKssli~~l~~ 27 (207)
|.....|+++|.+++| |||+.+.|..
T Consensus 1 m~~g~~I~l~G~~GsG-KST~~~~La~ 26 (186)
T 3cm0_A 1 MDVGQAVIFLGPPGAG-KGTQASRLAQ 26 (186)
T ss_dssp --CEEEEEEECCTTSC-HHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCC-HHHHHHHHHH
Confidence 5555679999999999 9999999863
No 259
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=92.66 E-value=0.017 Score=40.28 Aligned_cols=22 Identities=5% Similarity=-0.287 Sum_probs=19.3
Q ss_pred eeEEEEecccccceeeeeeeccC
Q 028595 5 AKLACLFATQVTSFLLYVLSVSG 27 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~ 27 (207)
..|++.|.+++| |||+.+.|..
T Consensus 2 ~~i~l~G~~GsG-KsT~~~~L~~ 23 (173)
T 3kb2_A 2 TLIILEGPDCCF-KSTVAAKLSK 23 (173)
T ss_dssp CEEEEECSSSSS-HHHHHHHHHH
T ss_pred eEEEEECCCCCC-HHHHHHHHHH
Confidence 368999999999 9999999863
No 260
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=92.57 E-value=0.42 Score=34.62 Aligned_cols=67 Identities=16% Similarity=0.074 Sum_probs=46.7
Q ss_pred EEEEEEEeCCCC-ccccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCccc
Q 028595 52 TVNLGLWDTAGQ-EDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLRE 123 (207)
Q Consensus 52 ~~~l~i~D~~G~-~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~ 123 (207)
.+.+.++|+|+. ... .....+..+|.+|++... +..+...+ ..+++.+.... +.++.+|.|+.|...
T Consensus 67 ~yD~viiD~p~~~~~~--~~~~~l~~aD~viiv~~~-~~~~~~~~-~~~~~~l~~~~-~~~~~vv~N~~~~~~ 134 (209)
T 3cwq_A 67 KYQNIVIDTQARPEDE--DLEALADGCDLLVIPSTP-DALALDAL-MLTIETLQKLG-NNRFRILLTIIPPYP 134 (209)
T ss_dssp GCSEEEEEEECCCSSS--HHHHHHHTSSEEEEEECS-SHHHHHHH-HHHHHHHHHTC-SSSEEEEECSBCCTT
T ss_pred cCCEEEEeCCCCcCcH--HHHHHHHHCCEEEEEecC-CchhHHHH-HHHHHHHHhcc-CCCEEEEEEecCCcc
Confidence 366789999886 332 234566789999999885 45666666 56666666532 567889999998643
No 261
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=92.57 E-value=0.015 Score=42.17 Aligned_cols=23 Identities=13% Similarity=-0.067 Sum_probs=19.7
Q ss_pred eeEEEEecccccceeeeeeeccCC
Q 028595 5 AKLACLFATQVTSFLLYVLSVSGR 28 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~~ 28 (207)
.-|+++|.+++| ||||++.|.+.
T Consensus 20 ~~ivl~GPSGaG-KsTL~~~L~~~ 42 (197)
T 3ney_A 20 KTLVLIGASGVG-RSHIKNALLSQ 42 (197)
T ss_dssp CEEEEECCTTSS-HHHHHHHHHHH
T ss_pred CEEEEECcCCCC-HHHHHHHHHhh
Confidence 457899999999 99999999754
No 262
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=92.56 E-value=0.018 Score=40.92 Aligned_cols=26 Identities=8% Similarity=-0.083 Sum_probs=20.8
Q ss_pred ccceeEEEEecccccceeeeeeeccCC
Q 028595 2 ELLAKLACLFATQVTSFLLYVLSVSGR 28 (207)
Q Consensus 2 ~~~~ki~iiG~~~~GgKssli~~l~~~ 28 (207)
....-++++|.+++| ||||++++...
T Consensus 4 ~~~~~i~i~G~sGsG-KTTl~~~l~~~ 29 (174)
T 1np6_A 4 TMIPLLAFAAWSGTG-KTTLLKKLIPA 29 (174)
T ss_dssp -CCCEEEEECCTTSC-HHHHHHHHHHH
T ss_pred CcceEEEEEeCCCCC-HHHHHHHHHHh
Confidence 334568899999999 99999998753
No 263
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=92.47 E-value=0.023 Score=40.41 Aligned_cols=26 Identities=8% Similarity=-0.118 Sum_probs=21.8
Q ss_pred CccceeEEEEecccccceeeeeeeccC
Q 028595 1 MELLAKLACLFATQVTSFLLYVLSVSG 27 (207)
Q Consensus 1 m~~~~ki~iiG~~~~GgKssli~~l~~ 27 (207)
|.....|++.|.+++| |||+.+.|..
T Consensus 2 ~~~~~~I~l~G~~GsG-KST~~~~L~~ 27 (193)
T 2rhm_A 2 MQTPALIIVTGHPATG-KTTLSQALAT 27 (193)
T ss_dssp CSCCEEEEEEESTTSS-HHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCC-HHHHHHHHHH
Confidence 4556679999999999 9999999863
No 264
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=92.39 E-value=0.022 Score=41.65 Aligned_cols=26 Identities=12% Similarity=-0.167 Sum_probs=22.0
Q ss_pred CccceeEEEEecccccceeeeeeeccC
Q 028595 1 MELLAKLACLFATQVTSFLLYVLSVSG 27 (207)
Q Consensus 1 m~~~~ki~iiG~~~~GgKssli~~l~~ 27 (207)
|.....|++.|.+++| |||+.+.|..
T Consensus 1 M~~~~~I~i~G~~GSG-KST~~~~L~~ 26 (218)
T 1vht_A 1 MSLRYIVALTGGIGSG-KSTVANAFAD 26 (218)
T ss_dssp -CCCEEEEEECCTTSC-HHHHHHHHHH
T ss_pred CCCceEEEEECCCCCC-HHHHHHHHHH
Confidence 6666789999999999 9999999864
No 265
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=92.38 E-value=0.02 Score=41.34 Aligned_cols=25 Identities=0% Similarity=-0.223 Sum_probs=20.6
Q ss_pred ccceeEEEEecccccceeeeeeeccC
Q 028595 2 ELLAKLACLFATQVTSFLLYVLSVSG 27 (207)
Q Consensus 2 ~~~~ki~iiG~~~~GgKssli~~l~~ 27 (207)
.....|+++|.+++| |||+.+.+..
T Consensus 23 ~~~~~i~l~G~~GsG-KsTl~~~La~ 47 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAG-KTTLGKAFAR 47 (199)
T ss_dssp -CCCEEEEECCTTSC-HHHHHHHHHH
T ss_pred CCCCEEEEEcCCCCC-HHHHHHHHHH
Confidence 345579999999999 9999998863
No 266
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=92.37 E-value=0.019 Score=43.61 Aligned_cols=22 Identities=0% Similarity=-0.105 Sum_probs=19.3
Q ss_pred eEEEEecccccceeeeeeeccCC
Q 028595 6 KLACLFATQVTSFLLYVLSVSGR 28 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~~ 28 (207)
-++++|.+++| ||||++.+.+-
T Consensus 34 ~~~liG~nGsG-KSTLlk~l~Gl 55 (262)
T 1b0u_A 34 VISIIGSSGSG-KSTFLRCINFL 55 (262)
T ss_dssp EEEEECCTTSS-HHHHHHHHTTS
T ss_pred EEEEECCCCCC-HHHHHHHHhcC
Confidence 46899999999 99999998765
No 267
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=92.37 E-value=0.019 Score=44.50 Aligned_cols=23 Identities=4% Similarity=-0.252 Sum_probs=20.1
Q ss_pred eEEEEecccccceeeeeeeccCCC
Q 028595 6 KLACLFATQVTSFLLYVLSVSGRS 29 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~~~ 29 (207)
-++++|.+++| ||||+|.+.+..
T Consensus 171 iv~l~G~sG~G-KSTll~~l~g~~ 193 (301)
T 1u0l_A 171 ISTMAGLSGVG-KSSLLNAINPGL 193 (301)
T ss_dssp EEEEECSTTSS-HHHHHHHHSTTC
T ss_pred eEEEECCCCCc-HHHHHHHhcccc
Confidence 46899999999 999999998654
No 268
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=92.34 E-value=0.018 Score=43.11 Aligned_cols=22 Identities=14% Similarity=0.024 Sum_probs=19.6
Q ss_pred eEEEEecccccceeeeeeeccCC
Q 028595 6 KLACLFATQVTSFLLYVLSVSGR 28 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~~ 28 (207)
-++++|..++| ||||++.+.+-
T Consensus 26 ~~~liG~nGsG-KSTLl~~l~Gl 47 (240)
T 2onk_A 26 YCVLLGPTGAG-KSVFLELIAGI 47 (240)
T ss_dssp EEEEECCTTSS-HHHHHHHHHTS
T ss_pred EEEEECCCCCC-HHHHHHHHhCC
Confidence 47899999999 99999999765
No 269
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=92.32 E-value=0.019 Score=42.22 Aligned_cols=22 Identities=5% Similarity=-0.127 Sum_probs=19.4
Q ss_pred eEEEEecccccceeeeeeeccCC
Q 028595 6 KLACLFATQVTSFLLYVLSVSGR 28 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~~ 28 (207)
.++++|..++| ||||++.+.+-
T Consensus 37 ~~~iiG~NGsG-KSTLlk~l~Gl 58 (214)
T 1sgw_A 37 VVNFHGPNGIG-KTTLLKTISTY 58 (214)
T ss_dssp CEEEECCTTSS-HHHHHHHHTTS
T ss_pred EEEEECCCCCC-HHHHHHHHhcC
Confidence 47899999999 99999998765
No 270
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=92.27 E-value=0.02 Score=42.81 Aligned_cols=22 Identities=5% Similarity=-0.144 Sum_probs=19.6
Q ss_pred eEEEEecccccceeeeeeeccCC
Q 028595 6 KLACLFATQVTSFLLYVLSVSGR 28 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~~ 28 (207)
.++++|..++| ||||++.+.+-
T Consensus 33 ~~~i~G~nGsG-KSTLl~~l~Gl 54 (237)
T 2cbz_A 33 LVAVVGQVGCG-KSSLLSALLAE 54 (237)
T ss_dssp EEEEECSTTSS-HHHHHHHHTTC
T ss_pred EEEEECCCCCC-HHHHHHHHhcC
Confidence 57899999999 99999998765
No 271
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=92.26 E-value=0.024 Score=41.02 Aligned_cols=22 Identities=0% Similarity=-0.346 Sum_probs=20.1
Q ss_pred eeEEEEecccccceeeeeeeccC
Q 028595 5 AKLACLFATQVTSFLLYVLSVSG 27 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~ 27 (207)
..|+++|++++| |||+.+.|.+
T Consensus 3 ~~i~l~G~~GsG-KST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSG-KTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSC-HHHHHHHHHT
T ss_pred cEEEEECCCCCC-HHHHHHHHHH
Confidence 568999999999 9999999976
No 272
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=92.25 E-value=0.014 Score=40.73 Aligned_cols=23 Identities=0% Similarity=-0.389 Sum_probs=19.8
Q ss_pred eEEEEecccccceeeeeeeccCCC
Q 028595 6 KLACLFATQVTSFLLYVLSVSGRS 29 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~~~ 29 (207)
-++++|..++| ||||++.+.+.-
T Consensus 35 ~v~L~G~nGaG-KTTLlr~l~g~l 57 (158)
T 1htw_A 35 MVYLNGDLGAG-KTTLTRGMLQGI 57 (158)
T ss_dssp EEEEECSTTSS-HHHHHHHHHHHT
T ss_pred EEEEECCCCCC-HHHHHHHHHHhC
Confidence 47899999999 999999987653
No 273
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=92.18 E-value=0.021 Score=43.25 Aligned_cols=23 Identities=4% Similarity=-0.167 Sum_probs=19.8
Q ss_pred eEEEEecccccceeeeeeeccCCC
Q 028595 6 KLACLFATQVTSFLLYVLSVSGRS 29 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~~~ 29 (207)
-++++|..++| ||||++.+.+-.
T Consensus 35 ~~~liG~nGsG-KSTLlk~l~Gl~ 57 (257)
T 1g6h_A 35 VTLIIGPNGSG-KSTLINVITGFL 57 (257)
T ss_dssp EEEEECSTTSS-HHHHHHHHTTSS
T ss_pred EEEEECCCCCC-HHHHHHHHhCCC
Confidence 47899999999 999999987653
No 274
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=92.16 E-value=0.023 Score=41.02 Aligned_cols=22 Identities=0% Similarity=-0.254 Sum_probs=19.9
Q ss_pred eeEEEEecccccceeeeeeeccC
Q 028595 5 AKLACLFATQVTSFLLYVLSVSG 27 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~ 27 (207)
.+|+++|.+++| |||+.+.|.+
T Consensus 2 ~~i~i~G~~GsG-KSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCG-KSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSS-HHHHHHHHHH
T ss_pred eEEEEECCCCcC-HHHHHHHHHH
Confidence 479999999999 9999999875
No 275
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=92.15 E-value=0.016 Score=42.07 Aligned_cols=24 Identities=4% Similarity=-0.197 Sum_probs=20.3
Q ss_pred ceeEEEEecccccceeeeeeeccCC
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGR 28 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~ 28 (207)
...|+++|+.++| ||||++.+.+.
T Consensus 6 ~~~i~i~G~~GsG-KSTl~~~l~~~ 29 (211)
T 3asz_A 6 PFVIGIAGGTASG-KTTLAQALART 29 (211)
T ss_dssp CEEEEEEESTTSS-HHHHHHHHHHH
T ss_pred cEEEEEECCCCCC-HHHHHHHHHHH
Confidence 3468999999999 99999988653
No 276
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=92.14 E-value=0.021 Score=43.72 Aligned_cols=22 Identities=18% Similarity=-0.038 Sum_probs=19.4
Q ss_pred eEEEEecccccceeeeeeeccCC
Q 028595 6 KLACLFATQVTSFLLYVLSVSGR 28 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~~ 28 (207)
-++++|.+++| ||||++.+.+-
T Consensus 36 ~~~iiGpnGsG-KSTLl~~l~Gl 57 (275)
T 3gfo_A 36 VTAILGGNGVG-KSTLFQNFNGI 57 (275)
T ss_dssp EEEEECCTTSS-HHHHHHHHTTS
T ss_pred EEEEECCCCCC-HHHHHHHHHcC
Confidence 47899999999 99999998764
No 277
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=92.00 E-value=0.11 Score=42.67 Aligned_cols=59 Identities=17% Similarity=0.057 Sum_probs=36.3
Q ss_pred eEEEEecccccceeeeeeecc-------C-----------CCCCc---cccCceeeeeee-EEEE---CCeEEEEEEEeC
Q 028595 6 KLACLFATQVTSFLLYVLSVS-------G-----------RSSIW---DYIPTVFDNFSA-NVVA---EGTTVNLGLWDT 60 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~-------~-----------~~~~~---~~~~t~~~~~~~-~~~~---~~~~~~l~i~D~ 60 (207)
=|.|+|...+| ||+|+|.++ + ..|.. ...-|.|..... .+.+ +|..+.+.+.||
T Consensus 69 vvsv~G~~~~g-ks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vlllDT 147 (457)
T 4ido_A 69 AVSVAGAFRKG-KSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVLLMDT 147 (457)
T ss_dssp EEEEEEBTTSS-HHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEEEEEE
T ss_pred EEEEECCCCCc-hhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEEEEec
Confidence 35689999999 999999553 1 22221 112244443322 2222 667889999999
Q ss_pred CCCcc
Q 028595 61 AGQED 65 (207)
Q Consensus 61 ~G~~~ 65 (207)
.|...
T Consensus 148 EG~~d 152 (457)
T 4ido_A 148 QGTFD 152 (457)
T ss_dssp CCBTC
T ss_pred cCCCC
Confidence 99543
No 278
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=91.99 E-value=0.02 Score=41.18 Aligned_cols=22 Identities=0% Similarity=-0.200 Sum_probs=19.4
Q ss_pred eEEEEecccccceeeeeeeccCC
Q 028595 6 KLACLFATQVTSFLLYVLSVSGR 28 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~~ 28 (207)
-|+++|++++| ||||+++|...
T Consensus 3 pIVi~GPSG~G-K~Tl~~~L~~~ 24 (186)
T 1ex7_A 3 PIVISGPSGTG-KSTLLKKLFAE 24 (186)
T ss_dssp CEEEECCTTSS-HHHHHHHHHHH
T ss_pred EEEEECCCCCC-HHHHHHHHHHh
Confidence 48999999999 99999998744
No 279
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=91.98 E-value=0.023 Score=43.29 Aligned_cols=22 Identities=9% Similarity=-0.043 Sum_probs=19.5
Q ss_pred eEEEEecccccceeeeeeeccCC
Q 028595 6 KLACLFATQVTSFLLYVLSVSGR 28 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~~ 28 (207)
-++++|.+++| ||||++.+.+-
T Consensus 39 ~~~liG~nGsG-KSTLl~~l~Gl 60 (266)
T 4g1u_C 39 MVAIIGPNGAG-KSTLLRLLTGY 60 (266)
T ss_dssp EEEEECCTTSC-HHHHHHHHTSS
T ss_pred EEEEECCCCCc-HHHHHHHHhcC
Confidence 47899999999 99999999765
No 280
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=91.97 E-value=0.025 Score=42.44 Aligned_cols=22 Identities=5% Similarity=-0.321 Sum_probs=19.7
Q ss_pred eEEEEecccccceeeeeeeccCC
Q 028595 6 KLACLFATQVTSFLLYVLSVSGR 28 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~~ 28 (207)
.++++|..++| ||||++.+.+-
T Consensus 30 ~~~i~G~nGsG-KSTLl~~l~Gl 51 (243)
T 1mv5_A 30 IIAFAGPSGGG-KSTIFSLLERF 51 (243)
T ss_dssp EEEEECCTTSS-HHHHHHHHTTS
T ss_pred EEEEECCCCCC-HHHHHHHHhcC
Confidence 57899999999 99999998765
No 281
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=91.95 E-value=0.023 Score=43.22 Aligned_cols=22 Identities=0% Similarity=-0.138 Sum_probs=19.3
Q ss_pred eEEEEecccccceeeeeeeccCC
Q 028595 6 KLACLFATQVTSFLLYVLSVSGR 28 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~~ 28 (207)
-++++|..++| ||||++.+.+-
T Consensus 52 i~~liG~NGsG-KSTLlk~l~Gl 73 (263)
T 2olj_A 52 VVVVIGPSGSG-KSTFLRCLNLL 73 (263)
T ss_dssp EEEEECCTTSS-HHHHHHHHTTS
T ss_pred EEEEEcCCCCc-HHHHHHHHHcC
Confidence 47899999999 99999998765
No 282
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=91.95 E-value=0.017 Score=41.67 Aligned_cols=23 Identities=4% Similarity=-0.305 Sum_probs=19.9
Q ss_pred eeEEEEecccccceeeeeeeccCC
Q 028595 5 AKLACLFATQVTSFLLYVLSVSGR 28 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~~ 28 (207)
..|+++|.+++| |||+++.+.+.
T Consensus 7 ~~i~l~G~~GsG-KSTl~~~L~~~ 29 (207)
T 2j41_A 7 LLIVLSGPSGVG-KGTVRKRIFED 29 (207)
T ss_dssp CEEEEECSTTSC-HHHHHHHHHHC
T ss_pred CEEEEECCCCCC-HHHHHHHHHHh
Confidence 368999999999 99999998754
No 283
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=91.93 E-value=0.025 Score=42.54 Aligned_cols=22 Identities=0% Similarity=-0.253 Sum_probs=19.7
Q ss_pred eEEEEecccccceeeeeeeccCC
Q 028595 6 KLACLFATQVTSFLLYVLSVSGR 28 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~~ 28 (207)
.++++|.+++| ||||++.+.+-
T Consensus 37 ~~~i~G~nGsG-KSTLl~~l~Gl 58 (247)
T 2ff7_A 37 VIGIVGRSGSG-KSTLTKLIQRF 58 (247)
T ss_dssp EEEEECSTTSS-HHHHHHHHTTS
T ss_pred EEEEECCCCCC-HHHHHHHHhcC
Confidence 57899999999 99999998765
No 284
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=91.91 E-value=0.023 Score=42.51 Aligned_cols=22 Identities=9% Similarity=-0.014 Sum_probs=19.4
Q ss_pred eEEEEecccccceeeeeeeccCC
Q 028595 6 KLACLFATQVTSFLLYVLSVSGR 28 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~~ 28 (207)
-++++|..++| ||||++.+.+-
T Consensus 34 ~~~l~G~nGsG-KSTLl~~l~Gl 55 (240)
T 1ji0_A 34 IVTLIGANGAG-KTTTLSAIAGL 55 (240)
T ss_dssp EEEEECSTTSS-HHHHHHHHTTS
T ss_pred EEEEECCCCCC-HHHHHHHHhCC
Confidence 47899999999 99999998765
No 285
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=91.88 E-value=0.023 Score=42.97 Aligned_cols=22 Identities=5% Similarity=-0.189 Sum_probs=19.4
Q ss_pred eEEEEecccccceeeeeeeccCC
Q 028595 6 KLACLFATQVTSFLLYVLSVSGR 28 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~~ 28 (207)
-++++|..++| ||||++.+.+-
T Consensus 43 i~~l~G~NGsG-KSTLlk~l~Gl 64 (256)
T 1vpl_A 43 IFGLIGPNGAG-KTTTLRIISTL 64 (256)
T ss_dssp EEEEECCTTSS-HHHHHHHHTTS
T ss_pred EEEEECCCCCC-HHHHHHHHhcC
Confidence 47899999999 99999998765
No 286
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=91.88 E-value=0.027 Score=40.98 Aligned_cols=23 Identities=9% Similarity=-0.297 Sum_probs=19.6
Q ss_pred eeEEEEecccccceeeeeeeccCC
Q 028595 5 AKLACLFATQVTSFLLYVLSVSGR 28 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~~ 28 (207)
.-|+++|++++| ||||++.|...
T Consensus 9 ~~i~l~GpsGsG-KsTl~~~L~~~ 31 (208)
T 3tau_A 9 LLIVLSGPSGVG-KGTVREAVFKD 31 (208)
T ss_dssp CEEEEECCTTSC-HHHHHHHHHHS
T ss_pred cEEEEECcCCCC-HHHHHHHHHhh
Confidence 347889999999 99999999754
No 287
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=91.80 E-value=0.024 Score=42.70 Aligned_cols=22 Identities=9% Similarity=-0.053 Sum_probs=19.4
Q ss_pred eEEEEecccccceeeeeeeccCC
Q 028595 6 KLACLFATQVTSFLLYVLSVSGR 28 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~~ 28 (207)
.++++|..++| ||||++.+.+-
T Consensus 28 ~~~liG~NGsG-KSTLlk~l~Gl 49 (249)
T 2qi9_C 28 ILHLVGPNGAG-KSTLLARMAGM 49 (249)
T ss_dssp EEEEECCTTSS-HHHHHHHHTTS
T ss_pred EEEEECCCCCc-HHHHHHHHhCC
Confidence 47899999999 99999998765
No 288
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=91.80 E-value=0.03 Score=41.89 Aligned_cols=26 Identities=12% Similarity=-0.160 Sum_probs=21.9
Q ss_pred CccceeEEEEecccccceeeeeeeccC
Q 028595 1 MELLAKLACLFATQVTSFLLYVLSVSG 27 (207)
Q Consensus 1 m~~~~ki~iiG~~~~GgKssli~~l~~ 27 (207)
|.....|++.|++++| |||+.+.|..
T Consensus 26 ~~~~~~I~l~G~~GsG-KsT~a~~L~~ 51 (243)
T 3tlx_A 26 SKPDGRYIFLGAPGSG-KGTQSLNLKK 51 (243)
T ss_dssp TSCCEEEEEECCTTSS-HHHHHHHHHH
T ss_pred cCCCcEEEEECCCCCC-HHHHHHHHHH
Confidence 3445689999999999 9999999863
No 289
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=91.79 E-value=0.028 Score=39.92 Aligned_cols=22 Identities=9% Similarity=-0.269 Sum_probs=19.4
Q ss_pred eeEEEEecccccceeeeeeeccC
Q 028595 5 AKLACLFATQVTSFLLYVLSVSG 27 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~ 27 (207)
..|++.|.+++| |||+.+.|..
T Consensus 2 ~~I~i~G~~GsG-KsT~~~~L~~ 23 (194)
T 1nks_A 2 KIGIVTGIPGVG-KSTVLAKVKE 23 (194)
T ss_dssp EEEEEEECTTSC-HHHHHHHHHH
T ss_pred eEEEEECCCCCC-HHHHHHHHHH
Confidence 468999999999 9999998864
No 290
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=91.79 E-value=0.024 Score=42.08 Aligned_cols=22 Identities=18% Similarity=0.073 Sum_probs=19.5
Q ss_pred eEEEEecccccceeeeeeeccCC
Q 028595 6 KLACLFATQVTSFLLYVLSVSGR 28 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~~ 28 (207)
.++++|..++| ||||++.+.+-
T Consensus 36 ~~~i~G~nGsG-KSTLl~~l~Gl 57 (229)
T 2pze_A 36 LLAVAGSTGAG-KTSLLMMIMGE 57 (229)
T ss_dssp EEEEECCTTSS-HHHHHHHHTTS
T ss_pred EEEEECCCCCC-HHHHHHHHhCC
Confidence 57899999999 99999998765
No 291
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=91.74 E-value=0.028 Score=42.47 Aligned_cols=26 Identities=8% Similarity=-0.104 Sum_probs=21.3
Q ss_pred CccceeEEEEecccccceeeeeeeccC
Q 028595 1 MELLAKLACLFATQVTSFLLYVLSVSG 27 (207)
Q Consensus 1 m~~~~ki~iiG~~~~GgKssli~~l~~ 27 (207)
|..+..|++.|.+++| |||+.+.|..
T Consensus 1 M~~~~lIvl~G~pGSG-KSTla~~La~ 26 (260)
T 3a4m_A 1 MGDIMLIILTGLPGVG-KSTFSKNLAK 26 (260)
T ss_dssp --CCEEEEEECCTTSS-HHHHHHHHHH
T ss_pred CCCCEEEEEEcCCCCC-HHHHHHHHHH
Confidence 6667789999999999 9999999864
No 292
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=91.69 E-value=0.025 Score=43.13 Aligned_cols=22 Identities=5% Similarity=-0.278 Sum_probs=19.6
Q ss_pred eEEEEecccccceeeeeeeccCC
Q 028595 6 KLACLFATQVTSFLLYVLSVSGR 28 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~~ 28 (207)
.++++|.+++| ||||++.+.+-
T Consensus 47 ~~~i~G~nGsG-KSTLlk~l~Gl 68 (271)
T 2ixe_A 47 VTALVGPNGSG-KSTVAALLQNL 68 (271)
T ss_dssp EEEEECSTTSS-HHHHHHHHTTS
T ss_pred EEEEECCCCCC-HHHHHHHHhcC
Confidence 57899999999 99999998765
No 293
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=91.64 E-value=0.032 Score=40.34 Aligned_cols=23 Identities=0% Similarity=-0.422 Sum_probs=20.1
Q ss_pred ceeEEEEecccccceeeeeeeccC
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSG 27 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~ 27 (207)
...|++.|.+++| |||+.+.|..
T Consensus 10 ~~~I~l~G~~GsG-KST~~~~L~~ 32 (212)
T 2wwf_A 10 GKFIVFEGLDRSG-KSTQSKLLVE 32 (212)
T ss_dssp SCEEEEEESTTSS-HHHHHHHHHH
T ss_pred CCEEEEEcCCCCC-HHHHHHHHHH
Confidence 4579999999999 9999999864
No 294
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=91.61 E-value=0.026 Score=42.78 Aligned_cols=22 Identities=9% Similarity=-0.316 Sum_probs=19.7
Q ss_pred eEEEEecccccceeeeeeeccCC
Q 028595 6 KLACLFATQVTSFLLYVLSVSGR 28 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~~ 28 (207)
.++++|..++| ||||++.+.+-
T Consensus 48 ~~~i~G~nGsG-KSTLl~~l~Gl 69 (260)
T 2ghi_A 48 TCALVGHTGSG-KSTIAKLLYRF 69 (260)
T ss_dssp EEEEECSTTSS-HHHHHHHHTTS
T ss_pred EEEEECCCCCC-HHHHHHHHhcc
Confidence 57899999999 99999999765
No 295
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=91.60 E-value=0.026 Score=43.26 Aligned_cols=22 Identities=5% Similarity=-0.227 Sum_probs=19.5
Q ss_pred eEEEEecccccceeeeeeeccCC
Q 028595 6 KLACLFATQVTSFLLYVLSVSGR 28 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~~ 28 (207)
.++++|..++| ||||++.+.+-
T Consensus 49 ~~~liG~NGsG-KSTLlk~l~Gl 70 (279)
T 2ihy_A 49 KWILYGLNGAG-KTTLLNILNAY 70 (279)
T ss_dssp EEEEECCTTSS-HHHHHHHHTTS
T ss_pred EEEEECCCCCc-HHHHHHHHhCC
Confidence 57899999999 99999998765
No 296
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=91.55 E-value=0.021 Score=41.76 Aligned_cols=22 Identities=5% Similarity=-0.164 Sum_probs=19.4
Q ss_pred eEEEEecccccceeeeeeeccCC
Q 028595 6 KLACLFATQVTSFLLYVLSVSGR 28 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~~ 28 (207)
.++++|..++| ||||++.+.+-
T Consensus 24 ~~~liG~nGsG-KSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSG-KTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSS-TTHHHHHHHHH
T ss_pred EEEEECCCCCC-HHHHHHHHhcC
Confidence 47899999999 99999999764
No 297
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=91.54 E-value=0.028 Score=39.80 Aligned_cols=22 Identities=5% Similarity=-0.176 Sum_probs=19.6
Q ss_pred ceeEEEEecccccceeeeeeecc
Q 028595 4 LAKLACLFATQVTSFLLYVLSVS 26 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~ 26 (207)
...|+++|.+++| |||+.+.|.
T Consensus 5 ~~~i~l~G~~GsG-Kst~a~~La 26 (185)
T 3trf_A 5 LTNIYLIGLMGAG-KTSVGSQLA 26 (185)
T ss_dssp CCEEEEECSTTSS-HHHHHHHHH
T ss_pred CCEEEEECCCCCC-HHHHHHHHH
Confidence 4578999999999 999999885
No 298
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=91.52 E-value=0.026 Score=42.98 Aligned_cols=22 Identities=14% Similarity=-0.000 Sum_probs=19.7
Q ss_pred eEEEEecccccceeeeeeeccCC
Q 028595 6 KLACLFATQVTSFLLYVLSVSGR 28 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~~ 28 (207)
.++++|..++| ||||++.+.+-
T Consensus 48 ~~~l~G~NGsG-KSTLlk~l~Gl 69 (267)
T 2zu0_C 48 VHAIMGPNGSG-KSTLSATLAGR 69 (267)
T ss_dssp EEEEECCTTSS-HHHHHHHHHTC
T ss_pred EEEEECCCCCC-HHHHHHHHhCC
Confidence 47899999999 99999999875
No 299
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=91.49 E-value=0.032 Score=40.43 Aligned_cols=24 Identities=4% Similarity=-0.327 Sum_probs=20.5
Q ss_pred cceeEEEEecccccceeeeeeeccC
Q 028595 3 LLAKLACLFATQVTSFLLYVLSVSG 27 (207)
Q Consensus 3 ~~~ki~iiG~~~~GgKssli~~l~~ 27 (207)
....|++.|.+++| |||+.+.|..
T Consensus 8 ~~~~I~l~G~~GsG-KsT~~~~L~~ 31 (215)
T 1nn5_A 8 RGALIVLEGVDRAG-KSTQSRKLVE 31 (215)
T ss_dssp CCCEEEEEESTTSS-HHHHHHHHHH
T ss_pred CCcEEEEECCCCCC-HHHHHHHHHH
Confidence 34579999999999 9999999864
No 300
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=91.49 E-value=0.028 Score=41.94 Aligned_cols=21 Identities=5% Similarity=-0.192 Sum_probs=19.3
Q ss_pred eeEEEEecccccceeeeeeecc
Q 028595 5 AKLACLFATQVTSFLLYVLSVS 26 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~ 26 (207)
..|+++|.+++| ||||++.+.
T Consensus 28 ~~i~l~G~~GsG-KSTl~k~La 48 (246)
T 2bbw_A 28 LRAVILGPPGSG-KGTVCQRIA 48 (246)
T ss_dssp CEEEEECCTTSS-HHHHHHHHH
T ss_pred cEEEEECCCCCC-HHHHHHHHH
Confidence 468999999999 999999998
No 301
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=91.47 E-value=0.026 Score=42.46 Aligned_cols=22 Identities=9% Similarity=-0.164 Sum_probs=19.6
Q ss_pred eEEEEecccccceeeeeeeccCC
Q 028595 6 KLACLFATQVTSFLLYVLSVSGR 28 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~~ 28 (207)
-++++|..++| ||||++.+.+-
T Consensus 31 ~~~l~G~nGsG-KSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAG-KSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSS-HHHHHHHHHTC
T ss_pred EEEEECCCCCC-HHHHHHHHhCC
Confidence 47899999999 99999999875
No 302
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=91.44 E-value=0.02 Score=41.30 Aligned_cols=22 Identities=9% Similarity=-0.168 Sum_probs=19.4
Q ss_pred eEEEEecccccceeeeeeeccCC
Q 028595 6 KLACLFATQVTSFLLYVLSVSGR 28 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~~ 28 (207)
.++++|.+++| ||||++.+.+.
T Consensus 3 ~i~i~G~nG~G-KTTll~~l~g~ 24 (189)
T 2i3b_A 3 HVFLTGPPGVG-KTTLIHKASEV 24 (189)
T ss_dssp CEEEESCCSSC-HHHHHHHHHHH
T ss_pred EEEEECCCCCh-HHHHHHHHHhh
Confidence 57999999999 99999998753
No 303
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=91.41 E-value=0.028 Score=42.40 Aligned_cols=22 Identities=18% Similarity=-0.085 Sum_probs=19.5
Q ss_pred eEEEEecccccceeeeeeeccCC
Q 028595 6 KLACLFATQVTSFLLYVLSVSGR 28 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~~ 28 (207)
.++++|..++| ||||++.+.+-
T Consensus 33 ~~~l~G~nGsG-KSTLl~~l~Gl 54 (253)
T 2nq2_C 33 ILAVLGQNGCG-KSTLLDLLLGI 54 (253)
T ss_dssp EEEEECCSSSS-HHHHHHHHTTS
T ss_pred EEEEECCCCCC-HHHHHHHHhCC
Confidence 47899999999 99999998765
No 304
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=91.40 E-value=0.026 Score=40.32 Aligned_cols=24 Identities=0% Similarity=-0.323 Sum_probs=20.5
Q ss_pred cceeEEEEecccccceeeeeeeccC
Q 028595 3 LLAKLACLFATQVTSFLLYVLSVSG 27 (207)
Q Consensus 3 ~~~ki~iiG~~~~GgKssli~~l~~ 27 (207)
....|++.|.+++| |||+.+.|..
T Consensus 8 ~~~~I~l~G~~GsG-KsT~~~~La~ 31 (196)
T 2c95_A 8 KTNIIFVVGGPGSG-KGTQCEKIVQ 31 (196)
T ss_dssp TSCEEEEEECTTSS-HHHHHHHHHH
T ss_pred CCCEEEEECCCCCC-HHHHHHHHHH
Confidence 34579999999999 9999998863
No 305
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=91.37 E-value=0.029 Score=42.69 Aligned_cols=22 Identities=18% Similarity=-0.099 Sum_probs=19.3
Q ss_pred eEEEEecccccceeeeeeeccCC
Q 028595 6 KLACLFATQVTSFLLYVLSVSGR 28 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~~ 28 (207)
-++++|..++| ||||++.+.+-
T Consensus 35 ~~~liG~nGsG-KSTLl~~i~Gl 56 (266)
T 2yz2_A 35 CLLVAGNTGSG-KSTLLQIVAGL 56 (266)
T ss_dssp EEEEECSTTSS-HHHHHHHHTTS
T ss_pred EEEEECCCCCc-HHHHHHHHhCC
Confidence 47899999999 99999998765
No 306
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=91.34 E-value=0.032 Score=41.10 Aligned_cols=22 Identities=9% Similarity=-0.126 Sum_probs=19.7
Q ss_pred ceeEEEEecccccceeeeeeecc
Q 028595 4 LAKLACLFATQVTSFLLYVLSVS 26 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~ 26 (207)
...|+++|.+++| |||+.+.|.
T Consensus 7 ~~~I~l~G~~GsG-KsT~a~~La 28 (227)
T 1zd8_A 7 LLRAVIMGAPGSG-KGTVSSRIT 28 (227)
T ss_dssp CCEEEEEECTTSS-HHHHHHHHH
T ss_pred CcEEEEECCCCCC-HHHHHHHHH
Confidence 3679999999999 999999886
No 307
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=91.24 E-value=0.028 Score=43.61 Aligned_cols=20 Identities=5% Similarity=-0.240 Sum_probs=18.4
Q ss_pred eEEEEecccccceeeeeeecc
Q 028595 6 KLACLFATQVTSFLLYVLSVS 26 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~ 26 (207)
-++++|.+++| ||||+|.+.
T Consensus 167 i~~l~G~sG~G-KSTLln~l~ 186 (302)
T 2yv5_A 167 ICILAGPSGVG-KSSILSRLT 186 (302)
T ss_dssp EEEEECSTTSS-HHHHHHHHH
T ss_pred EEEEECCCCCC-HHHHHHHHH
Confidence 46899999999 999999998
No 308
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=91.20 E-value=1.7 Score=33.30 Aligned_cols=66 Identities=17% Similarity=0.103 Sum_probs=44.9
Q ss_pred EEEEEEEeCCCCccccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC--CCCcEE-EEeeCCC
Q 028595 52 TVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS--PGVPVV-LVGTKLD 120 (207)
Q Consensus 52 ~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~--~~~pii-vv~nK~D 120 (207)
.+.+.|+|+|+.-... .....+..+|.+|+|... +..+...+ ..++..+.... .+.+++ +|.|+.+
T Consensus 156 ~yD~ViiD~p~~~~~~-~~~~~l~~aD~viiv~~~-~~~s~~~~-~~~~~~l~~~~~~~~~~~~gvV~N~~~ 224 (307)
T 3end_A 156 DTDVVIFDVLGDVVCG-GFAAPLQHADQAVVVTAN-DFDSIYAM-NRIIAAVQAKSKNYKVRLAGCVANRSR 224 (307)
T ss_dssp SCSEEEEEECCSSCCG-GGGGGGGTCSEEEEEECS-SHHHHHHH-HHHHHHHHTTTTTCCCEEEEEEEESCS
T ss_pred cCCEEEEeCCCccchH-HHHHHHHHCCEEEEEecC-cHHHHHHH-HHHHHHHHHhhhcCCCceEEEEEecCC
Confidence 3678899997753321 123456779999999874 55666666 56677776542 466655 9999998
No 309
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=91.19 E-value=0.034 Score=41.14 Aligned_cols=23 Identities=4% Similarity=-0.240 Sum_probs=20.0
Q ss_pred eeEEEEecccccceeeeeeeccCC
Q 028595 5 AKLACLFATQVTSFLLYVLSVSGR 28 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~~ 28 (207)
.-|++.|..++| ||||++.+.+.
T Consensus 21 ~~i~i~G~~GsG-KSTl~~~L~~~ 43 (230)
T 2vp4_A 21 FTVLIEGNIGSG-KTTYLNHFEKY 43 (230)
T ss_dssp EEEEEECSTTSC-HHHHHHTTGGG
T ss_pred eEEEEECCCCCC-HHHHHHHHHhc
Confidence 358999999999 99999998764
No 310
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=91.05 E-value=0.024 Score=40.95 Aligned_cols=22 Identities=5% Similarity=-0.079 Sum_probs=18.9
Q ss_pred eeEEEEecccccceeeeeeeccC
Q 028595 5 AKLACLFATQVTSFLLYVLSVSG 27 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~ 27 (207)
.-|+++|.+++| ||||++.+.+
T Consensus 30 ~~i~l~G~~GsG-KSTl~~~L~~ 51 (200)
T 4eun_A 30 RHVVVMGVSGSG-KTTIAHGVAD 51 (200)
T ss_dssp CEEEEECCTTSC-HHHHHHHHHH
T ss_pred cEEEEECCCCCC-HHHHHHHHHH
Confidence 358899999999 9999998864
No 311
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=91.05 E-value=0.033 Score=40.56 Aligned_cols=20 Identities=0% Similarity=-0.250 Sum_probs=18.6
Q ss_pred eEEEEecccccceeeeeeecc
Q 028595 6 KLACLFATQVTSFLLYVLSVS 26 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~ 26 (207)
+|++.|++++| |||+.+.|.
T Consensus 2 ~I~l~G~~GsG-KsT~a~~L~ 21 (216)
T 3fb4_A 2 NIVLMGLPGAG-KGTQAEQII 21 (216)
T ss_dssp EEEEECSTTSS-HHHHHHHHH
T ss_pred EEEEECCCCCC-HHHHHHHHH
Confidence 69999999999 999999985
No 312
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=91.02 E-value=0.03 Score=38.93 Aligned_cols=19 Identities=0% Similarity=-0.291 Sum_probs=17.6
Q ss_pred eEEEEecccccceeeeeeec
Q 028595 6 KLACLFATQVTSFLLYVLSV 25 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l 25 (207)
-|++.|.+++| |||+.+.|
T Consensus 3 ~I~l~G~~GsG-KsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSG-KSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSC-HHHHHHHH
T ss_pred EEEEECCCCCC-HHHHHHHH
Confidence 58899999999 99999998
No 313
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=90.92 E-value=0.025 Score=44.99 Aligned_cols=24 Identities=13% Similarity=-0.036 Sum_probs=21.2
Q ss_pred ceeEEEEecccccceeeeeeeccCC
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGR 28 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~ 28 (207)
..+++++|.+++| ||||++.+.+.
T Consensus 170 g~k~~IvG~nGsG-KSTLlk~L~gl 193 (365)
T 1lw7_A 170 AKTVAILGGESSG-KSVLVNKLAAV 193 (365)
T ss_dssp CEEEEEECCTTSH-HHHHHHHHHHH
T ss_pred hCeEEEECCCCCC-HHHHHHHHHHH
Confidence 4689999999999 99999998754
No 314
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=90.90 E-value=0.034 Score=39.84 Aligned_cols=21 Identities=14% Similarity=-0.037 Sum_probs=18.9
Q ss_pred eEEEEecccccceeeeeeeccC
Q 028595 6 KLACLFATQVTSFLLYVLSVSG 27 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~ 27 (207)
.|++.|.+++| |||+.+.|..
T Consensus 2 ~I~i~G~~GsG-KsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAG-KSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSC-HHHHHHHHHH
T ss_pred EEEEECCCccC-HHHHHHHHHH
Confidence 58999999999 9999998864
No 315
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=90.89 E-value=0.037 Score=42.04 Aligned_cols=22 Identities=18% Similarity=0.064 Sum_probs=19.6
Q ss_pred eEEEEecccccceeeeeeeccCC
Q 028595 6 KLACLFATQVTSFLLYVLSVSGR 28 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~~ 28 (207)
.++++|..++| ||||++.+.+-
T Consensus 32 ~~~i~G~NGsG-KSTLlk~l~Gl 53 (263)
T 2pjz_A 32 KVIILGPNGSG-KTTLLRAISGL 53 (263)
T ss_dssp EEEEECCTTSS-HHHHHHHHTTS
T ss_pred EEEEECCCCCC-HHHHHHHHhCC
Confidence 57899999999 99999998765
No 316
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=90.82 E-value=0.037 Score=43.16 Aligned_cols=27 Identities=7% Similarity=-0.175 Sum_probs=21.1
Q ss_pred CccceeEEEEecccccceeeeeeeccCC
Q 028595 1 MELLAKLACLFATQVTSFLLYVLSVSGR 28 (207)
Q Consensus 1 m~~~~ki~iiG~~~~GgKssli~~l~~~ 28 (207)
|...--++++|..++| ||||++.+.+.
T Consensus 1 m~~i~v~~i~G~~GaG-KTTll~~l~~~ 27 (318)
T 1nij_A 1 MNPIAVTLLTGFLGAG-KTTLLRHILNE 27 (318)
T ss_dssp -CCEEEEEEEESSSSS-CHHHHHHHHHS
T ss_pred CCcccEEEEEecCCCC-HHHHHHHHHhh
Confidence 5555567888999999 99999999854
No 317
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=90.80 E-value=0.036 Score=40.39 Aligned_cols=21 Identities=5% Similarity=-0.279 Sum_probs=18.9
Q ss_pred eEEEEecccccceeeeeeeccC
Q 028595 6 KLACLFATQVTSFLLYVLSVSG 27 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~ 27 (207)
+|++.|++++| |||+.+.|..
T Consensus 2 ~I~l~G~~GsG-KsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAG-KGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSS-HHHHHHHHHH
T ss_pred EEEEECCCCCC-HHHHHHHHHH
Confidence 69999999999 9999998853
No 318
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=90.74 E-value=0.033 Score=39.65 Aligned_cols=21 Identities=5% Similarity=-0.247 Sum_probs=18.4
Q ss_pred eEEEEecccccceeeeeeeccC
Q 028595 6 KLACLFATQVTSFLLYVLSVSG 27 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~ 27 (207)
-++++|.+++| ||||++.+.+
T Consensus 4 ii~l~G~~GaG-KSTl~~~L~~ 24 (189)
T 2bdt_A 4 LYIITGPAGVG-KSTTCKRLAA 24 (189)
T ss_dssp EEEEECSTTSS-HHHHHHHHHH
T ss_pred EEEEECCCCCc-HHHHHHHHhc
Confidence 46889999999 9999999964
No 319
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=90.74 E-value=0.036 Score=44.08 Aligned_cols=23 Identities=13% Similarity=-0.024 Sum_probs=20.0
Q ss_pred eEEEEecccccceeeeeeeccCCC
Q 028595 6 KLACLFATQVTSFLLYVLSVSGRS 29 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~~~ 29 (207)
-++++|.+++| ||||++.+.+-.
T Consensus 32 ~~~llGpsGsG-KSTLLr~iaGl~ 54 (359)
T 3fvq_A 32 ILFIIGASGCG-KTTLLRCLAGFE 54 (359)
T ss_dssp EEEEEESTTSS-HHHHHHHHHTSS
T ss_pred EEEEECCCCch-HHHHHHHHhcCC
Confidence 46899999999 999999998754
No 320
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=90.63 E-value=0.035 Score=40.04 Aligned_cols=22 Identities=0% Similarity=-0.158 Sum_probs=19.1
Q ss_pred eeEEEEecccccceeeeeeeccC
Q 028595 5 AKLACLFATQVTSFLLYVLSVSG 27 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~ 27 (207)
..|+++|.+++| |||+.+.|..
T Consensus 19 ~~I~l~G~~GsG-KSTla~~L~~ 40 (202)
T 3t61_A 19 GSIVVMGVSGSG-KSSVGEAIAE 40 (202)
T ss_dssp SCEEEECSTTSC-HHHHHHHHHH
T ss_pred eEEEEECCCCCC-HHHHHHHHHH
Confidence 368999999999 9999998864
No 321
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=90.52 E-value=0.029 Score=43.73 Aligned_cols=22 Identities=5% Similarity=-0.201 Sum_probs=19.0
Q ss_pred eeEEEEecccccceeeeeeeccC
Q 028595 5 AKLACLFATQVTSFLLYVLSVSG 27 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~ 27 (207)
.-|+++|.+++| ||||++.+.+
T Consensus 91 ~ivgI~G~sGsG-KSTL~~~L~g 112 (312)
T 3aez_A 91 FIIGVAGSVAVG-KSTTARVLQA 112 (312)
T ss_dssp EEEEEECCTTSC-HHHHHHHHHH
T ss_pred EEEEEECCCCch-HHHHHHHHHh
Confidence 357899999999 9999999865
No 322
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=90.51 E-value=0.044 Score=42.26 Aligned_cols=22 Identities=18% Similarity=0.073 Sum_probs=19.6
Q ss_pred eEEEEecccccceeeeeeeccCC
Q 028595 6 KLACLFATQVTSFLLYVLSVSGR 28 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~~ 28 (207)
.++++|..++| ||||++.+.+-
T Consensus 66 ~~~i~G~NGsG-KSTLlk~l~Gl 87 (290)
T 2bbs_A 66 LLAVAGSTGAG-KTSLLMMIMGE 87 (290)
T ss_dssp EEEEEESTTSS-HHHHHHHHTTS
T ss_pred EEEEECCCCCc-HHHHHHHHhcC
Confidence 57899999999 99999998765
No 323
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=90.45 E-value=0.033 Score=43.30 Aligned_cols=22 Identities=14% Similarity=-0.069 Sum_probs=19.5
Q ss_pred eeEEEEecccccceeeeeeeccC
Q 028595 5 AKLACLFATQVTSFLLYVLSVSG 27 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~ 27 (207)
-.++++|.+++| ||||++.+.+
T Consensus 127 e~vaIvGpsGsG-KSTLl~lL~g 148 (305)
T 2v9p_A 127 NCLAFIGPPNTG-KSMLCNSLIH 148 (305)
T ss_dssp SEEEEECSSSSS-HHHHHHHHHH
T ss_pred CEEEEECCCCCc-HHHHHHHHhh
Confidence 468999999999 9999999864
No 324
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=90.42 E-value=0.037 Score=38.84 Aligned_cols=22 Identities=0% Similarity=-0.179 Sum_probs=19.3
Q ss_pred eeEEEEecccccceeeeeeeccC
Q 028595 5 AKLACLFATQVTSFLLYVLSVSG 27 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~ 27 (207)
.-|++.|.+++| |||+.+.|..
T Consensus 3 ~~I~i~G~~GsG-KST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSG-KSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSS-HHHHHHHHHH
T ss_pred eEEEEecCCCCC-HHHHHHHHHh
Confidence 358899999999 9999999875
No 325
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=90.38 E-value=0.025 Score=40.09 Aligned_cols=23 Identities=4% Similarity=-0.140 Sum_probs=19.8
Q ss_pred eeEEEEecccccceeeeeeeccCC
Q 028595 5 AKLACLFATQVTSFLLYVLSVSGR 28 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~~ 28 (207)
..++++|.+++| ||||++.+.+-
T Consensus 3 ~~v~IvG~SGsG-KSTL~~~L~~~ 25 (171)
T 2f1r_A 3 LILSIVGTSDSG-KTTLITRMMPI 25 (171)
T ss_dssp CEEEEEESCHHH-HHHHHHHHHHH
T ss_pred eEEEEECCCCCC-HHHHHHHHHHH
Confidence 468999999999 99999998643
No 326
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=90.21 E-value=0.031 Score=40.54 Aligned_cols=21 Identities=19% Similarity=-0.051 Sum_probs=18.5
Q ss_pred eEEEEecccccceeeeeeeccC
Q 028595 6 KLACLFATQVTSFLLYVLSVSG 27 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~ 27 (207)
-|++.|.+++| |||+++.|..
T Consensus 2 ~I~i~G~~GsG-KsTl~~~L~~ 22 (214)
T 1gtv_A 2 LIAIEGVDGAG-KRTLVEKLSG 22 (214)
T ss_dssp EEEEEEEEEEE-HHHHHHHHHH
T ss_pred EEEEEcCCCCC-HHHHHHHHHH
Confidence 47999999999 9999998853
No 327
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=90.17 E-value=0.04 Score=38.66 Aligned_cols=22 Identities=5% Similarity=-0.218 Sum_probs=19.0
Q ss_pred eeEEEEecccccceeeeeeeccC
Q 028595 5 AKLACLFATQVTSFLLYVLSVSG 27 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~ 27 (207)
..|+++|.+++| |||+++.+.+
T Consensus 9 ~~i~l~G~~GsG-KSTl~~~l~~ 30 (175)
T 1knq_A 9 HIYVLMGVSGSG-KSAVASEVAH 30 (175)
T ss_dssp EEEEEECSTTSC-HHHHHHHHHH
T ss_pred cEEEEEcCCCCC-HHHHHHHHHH
Confidence 468999999999 9999998754
No 328
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=90.17 E-value=0.039 Score=40.92 Aligned_cols=20 Identities=5% Similarity=-0.160 Sum_probs=17.8
Q ss_pred eEEEEecccccceeeeeeecc
Q 028595 6 KLACLFATQVTSFLLYVLSVS 26 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~ 26 (207)
-++++|.+++| ||||++.++
T Consensus 32 ~~~l~GpnGsG-KSTLl~~i~ 51 (251)
T 2ehv_A 32 TVLLTGGTGTG-KTTFAAQFI 51 (251)
T ss_dssp EEEEECCTTSS-HHHHHHHHH
T ss_pred EEEEEeCCCCC-HHHHHHHHH
Confidence 47889999999 999999887
No 329
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=90.16 E-value=0.038 Score=42.93 Aligned_cols=23 Identities=9% Similarity=-0.198 Sum_probs=19.9
Q ss_pred eeEEEEecccccceeeeeeeccCC
Q 028595 5 AKLACLFATQVTSFLLYVLSVSGR 28 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~~ 28 (207)
-.++++|..++| ||||++.+.+-
T Consensus 81 e~vaivG~sGsG-KSTLl~ll~gl 103 (306)
T 3nh6_A 81 QTLALVGPSGAG-KSTILRLLFRF 103 (306)
T ss_dssp CEEEEESSSCHH-HHHHHHHHTTS
T ss_pred CEEEEECCCCch-HHHHHHHHHcC
Confidence 368999999999 99999988654
No 330
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=90.13 E-value=0.042 Score=43.64 Aligned_cols=23 Identities=9% Similarity=-0.047 Sum_probs=19.9
Q ss_pred eEEEEecccccceeeeeeeccCCC
Q 028595 6 KLACLFATQVTSFLLYVLSVSGRS 29 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~~~ 29 (207)
-++++|.+++| ||||++.+.+-.
T Consensus 43 ~~~llGpnGsG-KSTLLr~iaGl~ 65 (355)
T 1z47_A 43 MVGLLGPSGSG-KTTILRLIAGLE 65 (355)
T ss_dssp EEEEECSTTSS-HHHHHHHHHTSS
T ss_pred EEEEECCCCCc-HHHHHHHHhCCC
Confidence 47899999999 999999997653
No 331
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=90.11 E-value=0.046 Score=38.57 Aligned_cols=22 Identities=9% Similarity=-0.111 Sum_probs=19.4
Q ss_pred ceeEEEEecccccceeeeeeecc
Q 028595 4 LAKLACLFATQVTSFLLYVLSVS 26 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~ 26 (207)
...|++.|.+++| |||+.+.+.
T Consensus 11 ~~~i~i~G~~GsG-Kst~~~~l~ 32 (180)
T 3iij_A 11 LPNILLTGTPGVG-KTTLGKELA 32 (180)
T ss_dssp CCCEEEECSTTSS-HHHHHHHHH
T ss_pred CCeEEEEeCCCCC-HHHHHHHHH
Confidence 3468999999999 999999886
No 332
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=90.11 E-value=0.034 Score=40.69 Aligned_cols=22 Identities=0% Similarity=-0.307 Sum_probs=19.2
Q ss_pred eEEEEecccccceeeeeeeccCC
Q 028595 6 KLACLFATQVTSFLLYVLSVSGR 28 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~~ 28 (207)
-++++|.+++| ||||++.+++.
T Consensus 27 ~~~l~G~nGsG-KSTll~~l~g~ 48 (231)
T 4a74_A 27 ITEVFGEFGSG-KTQLAHTLAVM 48 (231)
T ss_dssp EEEEEESTTSS-HHHHHHHHHHH
T ss_pred EEEEECCCCCC-HHHHHHHHHHH
Confidence 47899999999 99999999764
No 333
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=90.10 E-value=0.055 Score=38.34 Aligned_cols=22 Identities=5% Similarity=-0.241 Sum_probs=19.1
Q ss_pred eeEEEEecccccceeeeeeeccC
Q 028595 5 AKLACLFATQVTSFLLYVLSVSG 27 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~ 27 (207)
..|++.|.+++| |||+.+.|..
T Consensus 7 ~~I~l~G~~GsG-KsT~~~~L~~ 28 (194)
T 1qf9_A 7 NVVFVLGGPGSG-KGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSS-HHHHHHHHHH
T ss_pred cEEEEECCCCCC-HHHHHHHHHH
Confidence 468999999999 9999998863
No 334
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=90.10 E-value=0.033 Score=42.24 Aligned_cols=23 Identities=9% Similarity=-0.188 Sum_probs=19.6
Q ss_pred eeEEEEecccccceeeeeeeccCC
Q 028595 5 AKLACLFATQVTSFLLYVLSVSGR 28 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~~ 28 (207)
-.++++|..++| ||||++.+.+-
T Consensus 26 ~~v~i~Gp~GsG-KSTll~~l~g~ 48 (261)
T 2eyu_A 26 GLILVTGPTGSG-KSTTIASMIDY 48 (261)
T ss_dssp EEEEEECSTTCS-HHHHHHHHHHH
T ss_pred CEEEEECCCCcc-HHHHHHHHHHh
Confidence 358899999999 99999998753
No 335
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=90.02 E-value=0.034 Score=41.56 Aligned_cols=22 Identities=5% Similarity=-0.259 Sum_probs=19.4
Q ss_pred eeEEEEecccccceeeeeeeccC
Q 028595 5 AKLACLFATQVTSFLLYVLSVSG 27 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~ 27 (207)
.-|+++|+.++| ||||++.+.+
T Consensus 26 ~iigI~G~~GsG-KSTl~k~L~~ 47 (245)
T 2jeo_A 26 FLIGVSGGTASG-KSTVCEKIME 47 (245)
T ss_dssp EEEEEECSTTSS-HHHHHHHHHH
T ss_pred EEEEEECCCCCC-HHHHHHHHHH
Confidence 458999999999 9999999865
No 336
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=90.00 E-value=0.059 Score=38.96 Aligned_cols=24 Identities=4% Similarity=-0.207 Sum_probs=20.8
Q ss_pred ceeEEEEecccccceeeeeeeccCC
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGR 28 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~ 28 (207)
...|+++|++++| |||+++.|.+.
T Consensus 21 ~~~i~i~G~~GsG-KSTl~~~L~~~ 44 (207)
T 2qt1_A 21 TFIIGISGVTNSG-KTTLAKNLQKH 44 (207)
T ss_dssp CEEEEEEESTTSS-HHHHHHHHHTT
T ss_pred CeEEEEECCCCCC-HHHHHHHHHHh
Confidence 4568999999999 99999998764
No 337
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=89.97 E-value=0.033 Score=39.80 Aligned_cols=23 Identities=0% Similarity=-0.328 Sum_probs=19.9
Q ss_pred ceeEEEEecccccceeeeeeeccC
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSG 27 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~ 27 (207)
...|++.|.+++| |||+.+.|..
T Consensus 12 ~~~I~l~G~~GsG-KsT~a~~L~~ 34 (199)
T 2bwj_A 12 CKIIFIIGGPGSG-KGTQCEKLVE 34 (199)
T ss_dssp SCEEEEEECTTSS-HHHHHHHHHH
T ss_pred CCEEEEECCCCCC-HHHHHHHHHH
Confidence 3579999999999 9999988864
No 338
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=89.91 E-value=0.045 Score=43.55 Aligned_cols=23 Identities=17% Similarity=-0.002 Sum_probs=19.9
Q ss_pred eEEEEecccccceeeeeeeccCCC
Q 028595 6 KLACLFATQVTSFLLYVLSVSGRS 29 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~~~ 29 (207)
-++++|.+++| ||||++.+.+-.
T Consensus 31 ~~~llGpnGsG-KSTLLr~iaGl~ 53 (359)
T 2yyz_A 31 FVALLGPSGCG-KTTTLLMLAGIY 53 (359)
T ss_dssp EEEEECSTTSS-HHHHHHHHHTSS
T ss_pred EEEEEcCCCch-HHHHHHHHHCCC
Confidence 47899999999 999999998653
No 339
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=89.91 E-value=0.045 Score=43.60 Aligned_cols=23 Identities=13% Similarity=0.017 Sum_probs=20.0
Q ss_pred eEEEEecccccceeeeeeeccCCC
Q 028595 6 KLACLFATQVTSFLLYVLSVSGRS 29 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~~~ 29 (207)
-++++|.+++| ||||++.+.+-.
T Consensus 31 ~~~llGpnGsG-KSTLLr~iaGl~ 53 (362)
T 2it1_A 31 FMALLGPSGSG-KSTLLYTIAGIY 53 (362)
T ss_dssp EEEEECCTTSS-HHHHHHHHHTSS
T ss_pred EEEEECCCCch-HHHHHHHHhcCC
Confidence 46899999999 999999998653
No 340
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=89.78 E-value=0.098 Score=41.02 Aligned_cols=20 Identities=5% Similarity=-0.179 Sum_probs=18.4
Q ss_pred EEEEecccccceeeeeeeccC
Q 028595 7 LACLFATQVTSFLLYVLSVSG 27 (207)
Q Consensus 7 i~iiG~~~~GgKssli~~l~~ 27 (207)
+++.|.+++| |||+++.+.+
T Consensus 39 ~ll~Gp~G~G-KTtl~~~la~ 58 (354)
T 1sxj_E 39 LLLYGPNGTG-KKTRCMALLE 58 (354)
T ss_dssp EEEECSTTSS-HHHHHHTHHH
T ss_pred EEEECCCCCC-HHHHHHHHHH
Confidence 8999999999 9999998865
No 341
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=89.73 E-value=0.057 Score=38.91 Aligned_cols=22 Identities=5% Similarity=-0.300 Sum_probs=19.5
Q ss_pred eeEEEEecccccceeeeeeeccC
Q 028595 5 AKLACLFATQVTSFLLYVLSVSG 27 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~ 27 (207)
..|++.|.+++| |||+.+.|..
T Consensus 5 ~~I~i~G~~GsG-KsT~~~~L~~ 26 (213)
T 2plr_A 5 VLIAFEGIDGSG-KSSQATLLKD 26 (213)
T ss_dssp EEEEEECCTTSS-HHHHHHHHHH
T ss_pred eEEEEEcCCCCC-HHHHHHHHHH
Confidence 478999999999 9999999864
No 342
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=89.71 E-value=0.048 Score=43.62 Aligned_cols=23 Identities=9% Similarity=-0.071 Sum_probs=19.9
Q ss_pred eEEEEecccccceeeeeeeccCCC
Q 028595 6 KLACLFATQVTSFLLYVLSVSGRS 29 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~~~ 29 (207)
-++++|.+++| ||||++.+.+-.
T Consensus 31 ~~~llGpnGsG-KSTLLr~iaGl~ 53 (372)
T 1g29_1 31 FMILLGPSGCG-KTTTLRMIAGLE 53 (372)
T ss_dssp EEEEECSTTSS-HHHHHHHHHTSS
T ss_pred EEEEECCCCcH-HHHHHHHHHcCC
Confidence 46899999999 999999998653
No 343
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=89.67 E-value=0.048 Score=43.71 Aligned_cols=23 Identities=4% Similarity=-0.078 Sum_probs=20.0
Q ss_pred eEEEEecccccceeeeeeeccCCC
Q 028595 6 KLACLFATQVTSFLLYVLSVSGRS 29 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~~~ 29 (207)
-++++|.+++| ||||++.+.+-.
T Consensus 31 ~~~llGpsGsG-KSTLLr~iaGl~ 53 (381)
T 3rlf_A 31 FVVFVGPSGCG-KSTLLRMIAGLE 53 (381)
T ss_dssp EEEEECCTTSS-HHHHHHHHHTSS
T ss_pred EEEEEcCCCch-HHHHHHHHHcCC
Confidence 46899999999 999999998654
No 344
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=89.65 E-value=0.053 Score=39.48 Aligned_cols=21 Identities=10% Similarity=-0.189 Sum_probs=18.9
Q ss_pred eEEEEecccccceeeeeeeccC
Q 028595 6 KLACLFATQVTSFLLYVLSVSG 27 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~ 27 (207)
+|++.|.+++| |||+.+.|..
T Consensus 2 ~I~l~G~~GsG-KsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAG-KGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSS-HHHHHHHHHH
T ss_pred EEEEECCCCCC-HHHHHHHHHH
Confidence 68999999999 9999998864
No 345
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=89.61 E-value=0.049 Score=43.55 Aligned_cols=23 Identities=13% Similarity=-0.041 Sum_probs=19.9
Q ss_pred eEEEEecccccceeeeeeeccCCC
Q 028595 6 KLACLFATQVTSFLLYVLSVSGRS 29 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~~~ 29 (207)
-++++|.+++| ||||++.+.+-.
T Consensus 39 ~~~llGpnGsG-KSTLLr~iaGl~ 61 (372)
T 1v43_A 39 FLVLLGPSGCG-KTTTLRMIAGLE 61 (372)
T ss_dssp EEEEECCTTSS-HHHHHHHHHTSS
T ss_pred EEEEECCCCCh-HHHHHHHHHcCC
Confidence 47899999999 999999987653
No 346
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=89.56 E-value=0.048 Score=38.90 Aligned_cols=21 Identities=0% Similarity=-0.309 Sum_probs=18.8
Q ss_pred eEEEEecccccceeeeeeeccC
Q 028595 6 KLACLFATQVTSFLLYVLSVSG 27 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~ 27 (207)
-|++.|++++| |||+.+.|..
T Consensus 2 ~I~l~G~~GsG-KsT~~~~L~~ 22 (197)
T 2z0h_A 2 FITFEGIDGSG-KSTQIQLLAQ 22 (197)
T ss_dssp EEEEECSTTSS-HHHHHHHHHH
T ss_pred EEEEECCCCCC-HHHHHHHHHH
Confidence 48999999999 9999999864
No 347
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=89.48 E-value=0.042 Score=43.53 Aligned_cols=23 Identities=17% Similarity=0.108 Sum_probs=20.0
Q ss_pred eEEEEecccccceeeeeeeccCCC
Q 028595 6 KLACLFATQVTSFLLYVLSVSGRS 29 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~~~ 29 (207)
-++++|.+++| ||||++.+.+-.
T Consensus 28 ~~~llGpnGsG-KSTLLr~iaGl~ 50 (348)
T 3d31_A 28 YFVILGPTGAG-KTLFLELIAGFH 50 (348)
T ss_dssp EEEEECCCTHH-HHHHHHHHHTSS
T ss_pred EEEEECCCCcc-HHHHHHHHHcCC
Confidence 47899999999 999999997653
No 348
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=89.48 E-value=0.53 Score=35.25 Aligned_cols=65 Identities=12% Similarity=0.105 Sum_probs=47.0
Q ss_pred EEEEEEEeCCCCccccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCC
Q 028595 52 TVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLD 120 (207)
Q Consensus 52 ~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D 120 (207)
.+.+.|+|+|+.-. ......+..+|.+|++...+ ..+...+ ..+...+.....+.++.+|.|+.+
T Consensus 144 ~yD~viiD~pp~~~--~~~~~~l~~aD~vivv~~~~-~~s~~~~-~~~~~~l~~~~~~~~~~vv~N~~~ 208 (267)
T 3k9g_A 144 KYDYIVIDTNPSLD--VTLKNALLCSDYVIIPMTAE-KWAVESL-DLFNFFVRKLNLFLPIFLIITRFK 208 (267)
T ss_dssp TCSEEEEEECSSCS--HHHHHHHTTCSEEEEEEESC-TTHHHHH-HHHHHHHHTTTCCCCEEEEEEEEC
T ss_pred CCCEEEEECcCCcc--HHHHHHHHHCCeEEEEeCCC-hHHHHHH-HHHHHHHHHHhccCCEEEEEeccc
Confidence 36678999987542 23345566799999999874 4566666 677777777666778889999994
No 349
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=89.42 E-value=0.051 Score=43.29 Aligned_cols=23 Identities=9% Similarity=-0.141 Sum_probs=19.7
Q ss_pred eEEEEecccccceeeeeeeccCCC
Q 028595 6 KLACLFATQVTSFLLYVLSVSGRS 29 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~~~ 29 (207)
-++++|.+++| ||||++.+.+-.
T Consensus 56 i~~IiGpnGaG-KSTLlr~i~GL~ 78 (366)
T 3tui_C 56 IYGVIGASGAG-KSTLIRCVNLLE 78 (366)
T ss_dssp EEEEECCTTSS-HHHHHHHHHTSS
T ss_pred EEEEEcCCCch-HHHHHHHHhcCC
Confidence 46899999999 999999987653
No 350
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=89.41 E-value=1.8 Score=31.63 Aligned_cols=67 Identities=10% Similarity=0.091 Sum_probs=48.0
Q ss_pred EEEEEEEeCCCCccccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCcEEEEeeCCCcc
Q 028595 52 TVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-PGVPVVLVGTKLDLR 122 (207)
Q Consensus 52 ~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~~piivv~nK~D~~ 122 (207)
.+.+.|+|+|+... ......+..+|.++++... +..+...+ ..+++.+.... +...+.+|.|+.+..
T Consensus 118 ~yD~viiD~p~~~~--~~~~~~l~~ad~viiv~~~-~~~~~~~~-~~~~~~l~~~~~~~~~~~~v~N~~~~~ 185 (245)
T 3ea0_A 118 FYDYIIVDFGASID--HVGVWVLEHLDELCIVTTP-SLQSLRRA-GQLLKLCKEFEKPISRIEIILNRADTN 185 (245)
T ss_dssp HCSEEEEEEESSCC--TTHHHHGGGCSEEEEEECS-SHHHHHHH-HHHHHHHHTCSSCCSCEEEEEESTTSC
T ss_pred hCCEEEEeCCCCCc--hHHHHHHHHCCEEEEEecC-cHHHHHHH-HHHHHHHHHhCCCccceEEEEecCCCC
Confidence 36788999987542 2334556779999999885 46777777 67777777654 245678999999854
No 351
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=89.40 E-value=0.056 Score=38.24 Aligned_cols=22 Identities=5% Similarity=-0.275 Sum_probs=19.3
Q ss_pred eeEEEEecccccceeeeeeeccC
Q 028595 5 AKLACLFATQVTSFLLYVLSVSG 27 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~ 27 (207)
..|++.|.+++| |||+.+.|..
T Consensus 4 ~~I~i~G~~GsG-KsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVG-STTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSC-HHHHHHHHHH
T ss_pred eEEEEECCCCCC-HHHHHHHHHH
Confidence 468999999999 9999998854
No 352
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=89.35 E-value=0.065 Score=38.06 Aligned_cols=24 Identities=0% Similarity=-0.242 Sum_probs=20.5
Q ss_pred ceeEEEEecccccceeeeeeeccCC
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGR 28 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~ 28 (207)
...|+++|.+++| |||+.+.|...
T Consensus 10 ~~~I~l~G~~GsG-KSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGTPGTG-KTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECSTTSS-HHHHHHHHHHH
T ss_pred CCEEEEECCCCCC-HHHHHHHHHHh
Confidence 4579999999999 99999988654
No 353
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=89.20 E-value=0.045 Score=42.50 Aligned_cols=22 Identities=5% Similarity=-0.207 Sum_probs=19.4
Q ss_pred eeEEEEecccccceeeeeeeccC
Q 028595 5 AKLACLFATQVTSFLLYVLSVSG 27 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~ 27 (207)
.-|+++|++++| ||||++.+.+
T Consensus 81 ~iigI~G~~GsG-KSTl~~~L~~ 102 (308)
T 1sq5_A 81 YIISIAGSVAVG-KSTTARVLQA 102 (308)
T ss_dssp EEEEEEECTTSS-HHHHHHHHHH
T ss_pred EEEEEECCCCCC-HHHHHHHHHH
Confidence 468999999999 9999999865
No 354
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=89.06 E-value=0.065 Score=42.06 Aligned_cols=23 Identities=13% Similarity=-0.035 Sum_probs=20.1
Q ss_pred eeEEEEecccccceeeeeeeccCC
Q 028595 5 AKLACLFATQVTSFLLYVLSVSGR 28 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~~ 28 (207)
-.++++|..++| ||||++.+.+-
T Consensus 172 ~~v~i~G~~GsG-KTTll~~l~g~ 194 (330)
T 2pt7_A 172 KNVIVCGGTGSG-KTTYIKSIMEF 194 (330)
T ss_dssp CCEEEEESTTSC-HHHHHHHGGGG
T ss_pred CEEEEECCCCCC-HHHHHHHHhCC
Confidence 368999999999 99999999754
No 355
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=89.06 E-value=0.042 Score=43.59 Aligned_cols=23 Identities=9% Similarity=0.127 Sum_probs=19.9
Q ss_pred eEEEEecccccceeeeeeeccCCC
Q 028595 6 KLACLFATQVTSFLLYVLSVSGRS 29 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~~~ 29 (207)
-++++|.+++| ||||++.+.+-.
T Consensus 33 ~~~llGpnGsG-KSTLLr~iaGl~ 55 (353)
T 1oxx_K 33 RFGILGPSGAG-KTTFMRIIAGLD 55 (353)
T ss_dssp EEEEECSCHHH-HHHHHHHHHTSS
T ss_pred EEEEECCCCCc-HHHHHHHHhCCC
Confidence 47899999999 999999998653
No 356
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=89.04 E-value=0.05 Score=37.48 Aligned_cols=22 Identities=0% Similarity=-0.274 Sum_probs=19.0
Q ss_pred eEEEEecccccceeeeeeeccCC
Q 028595 6 KLACLFATQVTSFLLYVLSVSGR 28 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~~ 28 (207)
-++++|.+++| ||+|++.+.+.
T Consensus 38 ~~~l~G~~G~G-KTtL~~~i~~~ 59 (149)
T 2kjq_A 38 FIYVWGEEGAG-KSHLLQAWVAQ 59 (149)
T ss_dssp EEEEESSSTTT-TCHHHHHHHHH
T ss_pred EEEEECCCCCC-HHHHHHHHHHH
Confidence 47889999999 99999998753
No 357
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=88.99 E-value=0.037 Score=39.10 Aligned_cols=23 Identities=9% Similarity=-0.083 Sum_probs=19.3
Q ss_pred eeEEEEecccccceeeeeeeccCC
Q 028595 5 AKLACLFATQVTSFLLYVLSVSGR 28 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~~ 28 (207)
..++++|.+++| ||+|++.+.+.
T Consensus 39 ~~~~l~G~~G~G-KTtL~~~i~~~ 61 (180)
T 3ec2_A 39 KGLTFVGSPGVG-KTHLAVATLKA 61 (180)
T ss_dssp CEEEECCSSSSS-HHHHHHHHHHH
T ss_pred CEEEEECCCCCC-HHHHHHHHHHH
Confidence 358899999999 99999988643
No 358
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=88.96 E-value=0.056 Score=37.92 Aligned_cols=21 Identities=5% Similarity=-0.230 Sum_probs=18.6
Q ss_pred eEEEEecccccceeeeeeeccC
Q 028595 6 KLACLFATQVTSFLLYVLSVSG 27 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~ 27 (207)
-|++.|.+++| |||+.+.|..
T Consensus 5 ~i~l~G~~GsG-KST~a~~La~ 25 (178)
T 1qhx_A 5 MIILNGGSSAG-KSGIVRCLQS 25 (178)
T ss_dssp EEEEECCTTSS-HHHHHHHHHH
T ss_pred EEEEECCCCCC-HHHHHHHHHH
Confidence 58899999999 9999999864
No 359
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=88.89 E-value=0.074 Score=37.41 Aligned_cols=22 Identities=5% Similarity=-0.325 Sum_probs=15.3
Q ss_pred ceeEEEEecccccceeeeeeecc
Q 028595 4 LAKLACLFATQVTSFLLYVLSVS 26 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~ 26 (207)
...|++.|.+++| |||+.+.|.
T Consensus 5 ~~~I~l~G~~GsG-KST~a~~La 26 (183)
T 2vli_A 5 SPIIWINGPFGVG-KTHTAHTLH 26 (183)
T ss_dssp CCEEEEECCC-----CHHHHHHH
T ss_pred CeEEEEECCCCCC-HHHHHHHHH
Confidence 3468999999999 999999985
No 360
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=88.89 E-value=0.072 Score=42.41 Aligned_cols=22 Identities=18% Similarity=0.075 Sum_probs=19.7
Q ss_pred cceeEEEEecccccceeeeeeec
Q 028595 3 LLAKLACLFATQVTSFLLYVLSV 25 (207)
Q Consensus 3 ~~~ki~iiG~~~~GgKssli~~l 25 (207)
...||+++|..++| ||||++++
T Consensus 32 ~~~killlG~~~SG-KST~~kq~ 53 (362)
T 1zcb_A 32 RLVKILLLGAGESG-KSTFLKQM 53 (362)
T ss_dssp CCEEEEEECSTTSS-HHHHHHHH
T ss_pred CccEEEEECCCCCc-HHHHHHHH
Confidence 46799999999999 99999885
No 361
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=88.79 E-value=0.079 Score=38.22 Aligned_cols=23 Identities=9% Similarity=-0.240 Sum_probs=19.4
Q ss_pred ceeEEEEecccccceeeeeeeccC
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSG 27 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~ 27 (207)
..-|+++|.+++| ||||++.+.+
T Consensus 22 ~~~i~i~G~~GsG-Kstl~~~l~~ 44 (201)
T 1rz3_A 22 RLVLGIDGLSRSG-KTTLANQLSQ 44 (201)
T ss_dssp SEEEEEEECTTSS-HHHHHHHHHH
T ss_pred CeEEEEECCCCCC-HHHHHHHHHH
Confidence 3468999999999 9999998863
No 362
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=88.75 E-value=0.064 Score=43.16 Aligned_cols=22 Identities=9% Similarity=-0.149 Sum_probs=19.6
Q ss_pred eEEEEecccccceeeeeeeccCC
Q 028595 6 KLACLFATQVTSFLLYVLSVSGR 28 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~~ 28 (207)
.++++|.+++| ||||++.+.+-
T Consensus 49 ~~~llGpsGsG-KSTLLr~iaGl 70 (390)
T 3gd7_A 49 RVGLLGRTGSG-KSTLLSAFLRL 70 (390)
T ss_dssp EEEEEESTTSS-HHHHHHHHHTC
T ss_pred EEEEECCCCCh-HHHHHHHHhCC
Confidence 57899999999 99999998764
No 363
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=88.75 E-value=0.059 Score=38.24 Aligned_cols=21 Identities=5% Similarity=-0.314 Sum_probs=18.8
Q ss_pred eEEEEecccccceeeeeeeccC
Q 028595 6 KLACLFATQVTSFLLYVLSVSG 27 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~ 27 (207)
.|++.|.+++| |||+.+.|..
T Consensus 2 ~I~l~G~~GsG-KsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSG-KTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSC-HHHHHHHHHH
T ss_pred EEEEECCCCCC-HHHHHHHHHH
Confidence 58999999999 9999999864
No 364
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=88.64 E-value=0.061 Score=38.75 Aligned_cols=22 Identities=0% Similarity=-0.248 Sum_probs=18.7
Q ss_pred eeEEEEecccccceeeeeeeccC
Q 028595 5 AKLACLFATQVTSFLLYVLSVSG 27 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~ 27 (207)
.-|+++|.+++| ||||.+.+.+
T Consensus 26 ~~i~l~G~sGsG-KSTl~~~La~ 47 (200)
T 3uie_A 26 CVIWVTGLSGSG-KSTLACALNQ 47 (200)
T ss_dssp EEEEEECSTTSS-HHHHHHHHHH
T ss_pred eEEEEECCCCCC-HHHHHHHHHH
Confidence 457899999999 9999998864
No 365
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=88.63 E-value=0.067 Score=42.55 Aligned_cols=23 Identities=4% Similarity=-0.169 Sum_probs=20.3
Q ss_pred eeEEEEecccccceeeeeeeccCC
Q 028595 5 AKLACLFATQVTSFLLYVLSVSGR 28 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~~ 28 (207)
-.++++|..++| ||||++.+.+-
T Consensus 176 ~~i~ivG~sGsG-KSTll~~l~~~ 198 (361)
T 2gza_A 176 RVIVVAGETGSG-KTTLMKALMQE 198 (361)
T ss_dssp CCEEEEESSSSC-HHHHHHHHHTT
T ss_pred CEEEEECCCCCC-HHHHHHHHHhc
Confidence 468999999999 99999999764
No 366
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=88.52 E-value=0.058 Score=42.70 Aligned_cols=24 Identities=4% Similarity=0.012 Sum_probs=21.1
Q ss_pred eeEEEEecccccceeeeeeeccCCC
Q 028595 5 AKLACLFATQVTSFLLYVLSVSGRS 29 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~~~ 29 (207)
-+++++|++++| ||||++.+.+..
T Consensus 72 q~~gIiG~nGaG-KTTLl~~I~g~~ 95 (347)
T 2obl_A 72 QRIGIFAGSGVG-KSTLLGMICNGA 95 (347)
T ss_dssp CEEEEEECTTSS-HHHHHHHHHHHS
T ss_pred CEEEEECCCCCC-HHHHHHHHhcCC
Confidence 368999999999 999999998763
No 367
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=88.49 E-value=0.044 Score=39.50 Aligned_cols=21 Identities=5% Similarity=-0.127 Sum_probs=18.6
Q ss_pred eEEEEecccccceeeeeeeccC
Q 028595 6 KLACLFATQVTSFLLYVLSVSG 27 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~ 27 (207)
.+++.|.+++| ||+|++.+..
T Consensus 40 ~~ll~G~~G~G-KT~l~~~l~~ 60 (226)
T 2chg_A 40 HLLFSGPPGTG-KTATAIALAR 60 (226)
T ss_dssp CEEEECSTTSS-HHHHHHHHHH
T ss_pred eEEEECCCCCC-HHHHHHHHHH
Confidence 38999999999 9999998864
No 368
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=88.40 E-value=0.067 Score=37.26 Aligned_cols=22 Identities=5% Similarity=-0.146 Sum_probs=19.2
Q ss_pred eeEEEEecccccceeeeeeeccC
Q 028595 5 AKLACLFATQVTSFLLYVLSVSG 27 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~ 27 (207)
..|++.|.+++| |||+.+.|..
T Consensus 3 ~~I~l~G~~GsG-KsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCG-MTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSS-HHHHHHHHHH
T ss_pred ceEEEECCCCCC-HHHHHHHHHH
Confidence 468999999999 9999998864
No 369
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=88.36 E-value=0.078 Score=39.17 Aligned_cols=23 Identities=4% Similarity=-0.258 Sum_probs=20.1
Q ss_pred ceeEEEEecccccceeeeeeeccC
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSG 27 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~ 27 (207)
...|+++|.+++| |||+.+.|..
T Consensus 16 ~~~I~l~G~~GsG-KsT~a~~La~ 38 (233)
T 1ak2_A 16 GVRAVLLGPPGAG-KGTQAPKLAK 38 (233)
T ss_dssp CCEEEEECCTTSS-HHHHHHHHHH
T ss_pred CeEEEEECCCCCC-HHHHHHHHHH
Confidence 4579999999999 9999998863
No 370
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=88.36 E-value=0.069 Score=37.03 Aligned_cols=21 Identities=5% Similarity=-0.319 Sum_probs=19.0
Q ss_pred eEEEEecccccceeeeeeeccC
Q 028595 6 KLACLFATQVTSFLLYVLSVSG 27 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~ 27 (207)
+|++.|.+++| |||+.+.|..
T Consensus 2 ~I~l~G~~GsG-KsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSG-KSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSC-HHHHHHHHHH
T ss_pred eEEEECCCCCC-HHHHHHHHHH
Confidence 68999999999 9999998864
No 371
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=88.35 E-value=0.077 Score=37.62 Aligned_cols=22 Identities=5% Similarity=-0.251 Sum_probs=19.0
Q ss_pred eeEEEEecccccceeeeeeeccC
Q 028595 5 AKLACLFATQVTSFLLYVLSVSG 27 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~ 27 (207)
..|++.|.+++| |||+.+.|..
T Consensus 4 ~~I~l~G~~GsG-KsT~a~~L~~ 25 (196)
T 1tev_A 4 LVVFVLGGPGAG-KGTQCARIVE 25 (196)
T ss_dssp EEEEEECCTTSS-HHHHHHHHHH
T ss_pred eEEEEECCCCCC-HHHHHHHHHH
Confidence 468999999999 9999988753
No 372
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=88.33 E-value=0.084 Score=39.62 Aligned_cols=21 Identities=0% Similarity=-0.227 Sum_probs=19.3
Q ss_pred eeEEEEecccccceeeeeeecc
Q 028595 5 AKLACLFATQVTSFLLYVLSVS 26 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~ 26 (207)
..|+++|.+++| |||+++.+.
T Consensus 28 ~~I~I~G~~GsG-KSTl~k~La 48 (252)
T 4e22_A 28 PVITVDGPSGAG-KGTLCKALA 48 (252)
T ss_dssp CEEEEECCTTSS-HHHHHHHHH
T ss_pred cEEEEECCCCCC-HHHHHHHHH
Confidence 478999999999 999999987
No 373
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=88.29 E-value=0.075 Score=38.82 Aligned_cols=23 Identities=0% Similarity=-0.194 Sum_probs=19.9
Q ss_pred ceeEEEEecccccceeeeeeeccC
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSG 27 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~ 27 (207)
...|+++|.+++| |||+.+.|..
T Consensus 4 ~~~I~l~G~~GsG-KsT~a~~La~ 26 (220)
T 1aky_A 4 SIRMVLIGPPGAG-KGTQAPNLQE 26 (220)
T ss_dssp CCEEEEECCTTSS-HHHHHHHHHH
T ss_pred CcEEEEECCCCCC-HHHHHHHHHH
Confidence 3579999999999 9999998854
No 374
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=88.26 E-value=0.079 Score=38.07 Aligned_cols=22 Identities=5% Similarity=-0.201 Sum_probs=19.3
Q ss_pred ceeEEEEecccccceeeeeeecc
Q 028595 4 LAKLACLFATQVTSFLLYVLSVS 26 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~ 26 (207)
+..|++.|.+++| |||+.+.|.
T Consensus 15 ~~~I~l~G~~GsG-KsT~~~~L~ 36 (203)
T 1ukz_A 15 VSVIFVLGGPGAG-KGTQCEKLV 36 (203)
T ss_dssp CEEEEEECSTTSS-HHHHHHHHH
T ss_pred CcEEEEECCCCCC-HHHHHHHHH
Confidence 4568999999999 999998886
No 375
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=87.96 E-value=0.095 Score=38.79 Aligned_cols=24 Identities=8% Similarity=-0.207 Sum_probs=20.3
Q ss_pred cceeEEEEecccccceeeeeeeccC
Q 028595 3 LLAKLACLFATQVTSFLLYVLSVSG 27 (207)
Q Consensus 3 ~~~ki~iiG~~~~GgKssli~~l~~ 27 (207)
...-|++.|.+++| |||+++.+..
T Consensus 25 ~g~~i~i~G~~GsG-KsT~~~~l~~ 48 (229)
T 4eaq_A 25 MSAFITFEGPEGSG-KTTVINEVYH 48 (229)
T ss_dssp CCEEEEEECCTTSC-HHHHHHHHHH
T ss_pred CCeEEEEEcCCCCC-HHHHHHHHHH
Confidence 34568999999999 9999999864
No 376
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=87.90 E-value=0.076 Score=38.85 Aligned_cols=23 Identities=9% Similarity=-0.299 Sum_probs=19.8
Q ss_pred ceeEEEEecccccceeeeeeeccC
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSG 27 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~ 27 (207)
...|+++|.+++| |||+.+.|..
T Consensus 5 ~~~I~l~G~~GsG-KsT~~~~La~ 27 (222)
T 1zak_A 5 PLKVMISGAPASG-KGTQCELIKT 27 (222)
T ss_dssp SCCEEEEESTTSS-HHHHHHHHHH
T ss_pred CeEEEEECCCCCC-HHHHHHHHHH
Confidence 3579999999999 9999998863
No 377
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=87.86 E-value=0.06 Score=41.80 Aligned_cols=21 Identities=5% Similarity=-0.105 Sum_probs=18.5
Q ss_pred eeEEEEecccccceeeeeeecc
Q 028595 5 AKLACLFATQVTSFLLYVLSVS 26 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~ 26 (207)
--++++|.+++| |||+++.+.
T Consensus 103 ~vi~lvG~nGsG-KTTll~~La 123 (304)
T 1rj9_A 103 RVVLVVGVNGVG-KTTTIAKLG 123 (304)
T ss_dssp SEEEEECSTTSS-HHHHHHHHH
T ss_pred eEEEEECCCCCc-HHHHHHHHH
Confidence 368899999999 999999986
No 378
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=87.80 E-value=0.082 Score=37.99 Aligned_cols=22 Identities=5% Similarity=-0.123 Sum_probs=19.4
Q ss_pred eeEEEEecccccceeeeeeeccC
Q 028595 5 AKLACLFATQVTSFLLYVLSVSG 27 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~ 27 (207)
..|++.|.+++| |||+.+.|..
T Consensus 21 ~~I~l~G~~GsG-KST~a~~La~ 42 (201)
T 2cdn_A 21 MRVLLLGPPGAG-KGTQAVKLAE 42 (201)
T ss_dssp CEEEEECCTTSS-HHHHHHHHHH
T ss_pred eEEEEECCCCCC-HHHHHHHHHH
Confidence 468999999999 9999998864
No 379
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=87.74 E-value=0.062 Score=42.70 Aligned_cols=22 Identities=5% Similarity=-0.260 Sum_probs=19.2
Q ss_pred eEEEEecccccceeeeeeeccCC
Q 028595 6 KLACLFATQVTSFLLYVLSVSGR 28 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~~ 28 (207)
.++++|..++| ||||++.+++.
T Consensus 125 ~i~I~GptGSG-KTTlL~~l~g~ 146 (356)
T 3jvv_A 125 LVLVTGPTGSG-KSTTLAAMLDY 146 (356)
T ss_dssp EEEEECSTTSC-HHHHHHHHHHH
T ss_pred EEEEECCCCCC-HHHHHHHHHhc
Confidence 58899999999 99999998653
No 380
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=87.60 E-value=0.1 Score=37.33 Aligned_cols=24 Identities=0% Similarity=-0.331 Sum_probs=20.8
Q ss_pred ceeEEEEecccccceeeeeeeccCC
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGR 28 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~ 28 (207)
...|++.|.+++| |||+.+.|...
T Consensus 8 ~~~I~i~G~~GsG-KST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSG-KSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSC-HHHHHHHHHHT
T ss_pred ceEEEEECCCCCC-HHHHHHHHHHC
Confidence 4578999999999 99999998754
No 381
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=87.47 E-value=0.08 Score=41.41 Aligned_cols=21 Identities=5% Similarity=-0.254 Sum_probs=18.2
Q ss_pred eeEEEEecccccceeeeeeecc
Q 028595 5 AKLACLFATQVTSFLLYVLSVS 26 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~ 26 (207)
+=|+++|++++| ||||++.+.
T Consensus 93 ~iigI~GpsGSG-KSTl~~~L~ 113 (321)
T 3tqc_A 93 YIIGIAGSVAVG-KSTTSRVLK 113 (321)
T ss_dssp EEEEEECCTTSS-HHHHHHHHH
T ss_pred EEEEEECCCCCC-HHHHHHHHH
Confidence 358999999999 999998875
No 382
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=87.43 E-value=0.088 Score=38.67 Aligned_cols=21 Identities=5% Similarity=-0.309 Sum_probs=18.7
Q ss_pred eEEEEecccccceeeeeeeccC
Q 028595 6 KLACLFATQVTSFLLYVLSVSG 27 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~ 27 (207)
.|++.|.+++| |||+.+.|..
T Consensus 2 ~I~l~G~~GsG-KsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSG-KGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSC-HHHHHHHHHH
T ss_pred EEEEECCCCCC-HHHHHHHHHH
Confidence 58999999999 9999998853
No 383
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=87.36 E-value=0.066 Score=41.49 Aligned_cols=21 Identities=0% Similarity=-0.278 Sum_probs=18.3
Q ss_pred eEEEEecccccceeeeeeeccC
Q 028595 6 KLACLFATQVTSFLLYVLSVSG 27 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~ 27 (207)
-++++|..++| |||+++.+.+
T Consensus 102 vi~lvG~nGsG-KTTll~~Lag 122 (302)
T 3b9q_A 102 VIMIVGVNGGG-KTTSLGKLAH 122 (302)
T ss_dssp EEEEECCTTSC-HHHHHHHHHH
T ss_pred EEEEEcCCCCC-HHHHHHHHHH
Confidence 57899999999 9999999863
No 384
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=87.21 E-value=0.073 Score=43.81 Aligned_cols=22 Identities=5% Similarity=-0.061 Sum_probs=19.7
Q ss_pred eEEEEecccccceeeeeeeccCC
Q 028595 6 KLACLFATQVTSFLLYVLSVSGR 28 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~~ 28 (207)
.++++|..++| ||||++.+++-
T Consensus 140 ~v~IvGpnGsG-KSTLlr~L~Gl 161 (460)
T 2npi_A 140 RVVIVGGSQTG-KTSLSRTLCSY 161 (460)
T ss_dssp CEEEEESTTSS-HHHHHHHHHHT
T ss_pred EEEEECCCCCC-HHHHHHHHhCc
Confidence 58999999999 99999998754
No 385
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=87.18 E-value=0.13 Score=38.75 Aligned_cols=24 Identities=8% Similarity=-0.081 Sum_probs=20.3
Q ss_pred ceeEEEEecccccceeeeeeeccCC
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGR 28 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~ 28 (207)
...|++.|.+++| |||+++.|...
T Consensus 24 ~~~I~ieG~~GsG-KST~~~~L~~~ 47 (263)
T 1p5z_B 24 IKKISIEGNIAAG-KSTFVNILKQL 47 (263)
T ss_dssp CEEEEEECSTTSS-HHHHHTTTGGG
T ss_pred ceEEEEECCCCCC-HHHHHHHHHHh
Confidence 4578999999999 99999988643
No 386
>3uc9_A Increased recombination centers protein 6; rossmann-fold, clathrin accessory factor; 1.80A {Saccharomyces cerevisiae}
Probab=87.10 E-value=0.21 Score=37.03 Aligned_cols=24 Identities=13% Similarity=0.073 Sum_probs=19.8
Q ss_pred eeEEEE--ecccccceeeeeeeccCCC
Q 028595 5 AKLACL--FATQVTSFLLYVLSVSGRS 29 (207)
Q Consensus 5 ~ki~ii--G~~~~GgKssli~~l~~~~ 29 (207)
-||+++ |+++.+ ||.|++++.+..
T Consensus 28 nkilvl~~~~~~~~-~~~~~~~lf~~~ 53 (233)
T 3uc9_A 28 NKILVLSDHPHNFL-KTQFLQDLFHCS 53 (233)
T ss_dssp CEEEEEEEGGGHHH-HHHHHHHHHCCC
T ss_pred CceEEEecCccccc-HHHHHHHHhccc
Confidence 467777 888898 999999998773
No 387
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=87.06 E-value=0.1 Score=38.08 Aligned_cols=22 Identities=9% Similarity=-0.232 Sum_probs=19.4
Q ss_pred eeEEEEecccccceeeeeeeccC
Q 028595 5 AKLACLFATQVTSFLLYVLSVSG 27 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~ 27 (207)
..|+++|.+++| |||+.+.|..
T Consensus 6 ~~I~l~G~~GsG-KsT~a~~La~ 27 (217)
T 3be4_A 6 HNLILIGAPGSG-KGTQCEFIKK 27 (217)
T ss_dssp CEEEEEECTTSS-HHHHHHHHHH
T ss_pred eEEEEECCCCCC-HHHHHHHHHH
Confidence 579999999999 9999998853
No 388
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=86.93 E-value=0.083 Score=43.18 Aligned_cols=24 Identities=4% Similarity=0.018 Sum_probs=20.9
Q ss_pred eeEEEEecccccceeeeeeeccCCC
Q 028595 5 AKLACLFATQVTSFLLYVLSVSGRS 29 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~~~ 29 (207)
-+++++|++++| ||||++.+.+..
T Consensus 158 q~~~IvG~sGsG-KSTLl~~Iag~~ 181 (438)
T 2dpy_A 158 QRMGLFAGSGVG-KSVLLGMMARYT 181 (438)
T ss_dssp CEEEEEECTTSS-HHHHHHHHHHHS
T ss_pred CEEEEECCCCCC-HHHHHHHHhccc
Confidence 368999999999 999999987653
No 389
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=86.92 E-value=0.073 Score=41.79 Aligned_cols=90 Identities=16% Similarity=0.089 Sum_probs=49.3
Q ss_pred EEEEEeCCCCcccccc-ccc-----eecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCccc
Q 028595 54 NLGLWDTAGQEDYNRL-RPL-----SYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDKHY 127 (207)
Q Consensus 54 ~l~i~D~~G~~~~~~~-~~~-----~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~~~ 127 (207)
.+.+.|++|....... ... ..-..|-.+++.|.+........ ...+.+. -..-.++.||.|...
T Consensus 213 d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~~~~~~----~~~~~~~--~~it~iilTKlD~~a---- 282 (328)
T 3e70_C 213 DVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGNAIVEQ----ARQFNEA--VKIDGIILTKLDADA---- 282 (328)
T ss_dssp SEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTTHHHHH----HHHHHHH--SCCCEEEEECGGGCS----
T ss_pred hhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHHHHHHH----HHHHHHh--cCCCEEEEeCcCCcc----
Confidence 4567999986443221 110 01236888999997765433322 2233321 122367889998632
Q ss_pred ccCCCCCcccCHHHHHHHHHHhCCcEEEEeccCCCCCHH
Q 028595 128 LADHPGLVPVTTAQGEELRKQIGASYYIECSSKTQQNVK 166 (207)
Q Consensus 128 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~ 166 (207)
....+.......+. |...++ +|++++
T Consensus 283 ----------~~G~~l~~~~~~~~-pi~~i~--~Ge~v~ 308 (328)
T 3e70_C 283 ----------RGGAALSISYVIDA-PILFVG--VGQGYD 308 (328)
T ss_dssp ----------CCHHHHHHHHHHTC-CEEEEE--CSSSTT
T ss_pred ----------chhHHHHHHHHHCC-CEEEEe--CCCCcc
Confidence 22345566777787 665555 555554
No 390
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=86.91 E-value=0.089 Score=37.03 Aligned_cols=22 Identities=0% Similarity=-0.206 Sum_probs=19.1
Q ss_pred eeEEEEecccccceeeeeeeccC
Q 028595 5 AKLACLFATQVTSFLLYVLSVSG 27 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~ 27 (207)
..|+++|.+++| |||+.+.|..
T Consensus 6 ~~i~l~G~~GsG-KST~~~~L~~ 27 (179)
T 2pez_A 6 CTVWLTGLSGAG-KTTVSMALEE 27 (179)
T ss_dssp EEEEEECCTTSS-HHHHHHHHHH
T ss_pred cEEEEECCCCCC-HHHHHHHHHH
Confidence 358899999999 9999998864
No 391
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=86.88 E-value=3 Score=30.42 Aligned_cols=64 Identities=11% Similarity=-0.030 Sum_probs=44.1
Q ss_pred EEEEEEEeCCCCccccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCC
Q 028595 52 TVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLD 120 (207)
Q Consensus 52 ~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D 120 (207)
.+.+.|+|+|+.-.. .....+..+|.++++... +..+...+ ..+.+.+.... -..+.++.|+.+
T Consensus 131 ~yD~viiD~pp~~~~--~~~~~l~~aD~viiv~~~-~~~s~~~~-~~~~~~~~~~~-~~~~~~v~N~~~ 194 (254)
T 3kjh_A 131 KKEAVVMDMGAGIEH--LTRGTAKAVDMMIAVIEP-NLNSIKTG-LNIEKLAGDLG-IKKVRYVINKVR 194 (254)
T ss_dssp CCSEEEEEECTTCTT--CCHHHHTTCSEEEEEECS-SHHHHHHH-HHHHHHHHHHT-CSCEEEEEEEEC
T ss_pred CCCEEEEeCCCcccH--HHHHHHHHCCEEEEecCC-CHHHHHHH-HHHHHHHHHcC-CccEEEEEeCCC
Confidence 477889999875432 445566789999999986 45666666 55555554432 245789999988
No 392
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=86.87 E-value=0.1 Score=38.86 Aligned_cols=24 Identities=4% Similarity=-0.328 Sum_probs=19.6
Q ss_pred ccceeEEEEecccccceeeeeeecc
Q 028595 2 ELLAKLACLFATQVTSFLLYVLSVS 26 (207)
Q Consensus 2 ~~~~ki~iiG~~~~GgKssli~~l~ 26 (207)
.....|++.|.+++| |||+.+.+.
T Consensus 7 ~~~~~i~i~G~~GsG-KsTla~~la 30 (233)
T 3r20_A 7 SGSLVVAVDGPAGTG-KSSVSRGLA 30 (233)
T ss_dssp --CCEEEEECCTTSS-HHHHHHHHH
T ss_pred CCCeEEEEECCCCCC-HHHHHHHHH
Confidence 345679999999999 999999886
No 393
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=86.82 E-value=0.099 Score=43.61 Aligned_cols=22 Identities=5% Similarity=-0.269 Sum_probs=19.6
Q ss_pred eEEEEecccccceeeeeeeccCC
Q 028595 6 KLACLFATQVTSFLLYVLSVSGR 28 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~~ 28 (207)
.++++|+.++| |||+++.+++-
T Consensus 262 ~i~I~GptGSG-KTTlL~aL~~~ 283 (511)
T 2oap_1 262 SAIVVGETASG-KTTTLNAIMMF 283 (511)
T ss_dssp CEEEEESTTSS-HHHHHHHHGGG
T ss_pred EEEEECCCCCC-HHHHHHHHHhh
Confidence 58999999999 99999998754
No 394
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=86.80 E-value=0.099 Score=36.89 Aligned_cols=23 Identities=0% Similarity=-0.237 Sum_probs=19.2
Q ss_pred ceeEEEEecccccceeeeeeeccC
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSG 27 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~ 27 (207)
+.-++++|.+++| ||||+.++..
T Consensus 4 ~~~i~i~G~sGsG-KTTl~~~L~~ 26 (169)
T 1xjc_A 4 MNVWQVVGYKHSG-KTTLMEKWVA 26 (169)
T ss_dssp CCEEEEECCTTSS-HHHHHHHHHH
T ss_pred CEEEEEECCCCCC-HHHHHHHHHH
Confidence 3457899999999 9999999864
No 395
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=86.53 E-value=0.1 Score=38.04 Aligned_cols=22 Identities=9% Similarity=-0.183 Sum_probs=19.0
Q ss_pred eEEEEecccccceeeeeeeccCC
Q 028595 6 KLACLFATQVTSFLLYVLSVSGR 28 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~~ 28 (207)
.|+++|+|++| |+|...+|...
T Consensus 2 ~Iil~GpPGsG-KgTqa~~La~~ 23 (206)
T 3sr0_A 2 ILVFLGPPGAG-KGTQAKRLAKE 23 (206)
T ss_dssp EEEEECSTTSS-HHHHHHHHHHH
T ss_pred EEEEECCCCCC-HHHHHHHHHHH
Confidence 58999999999 99999888643
No 396
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=86.40 E-value=0.082 Score=42.21 Aligned_cols=23 Identities=9% Similarity=-0.188 Sum_probs=19.8
Q ss_pred eeEEEEecccccceeeeeeeccCC
Q 028595 5 AKLACLFATQVTSFLLYVLSVSGR 28 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~~ 28 (207)
-.++++|..++| ||||++.+.+.
T Consensus 137 ~~i~ivG~~GsG-KTTll~~l~~~ 159 (372)
T 2ewv_A 137 GLILVTGPTGSG-KSTTIASMIDY 159 (372)
T ss_dssp EEEEEECSSSSS-HHHHHHHHHHH
T ss_pred CEEEEECCCCCC-HHHHHHHHHhh
Confidence 358999999999 99999998753
No 397
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=86.32 E-value=0.099 Score=37.01 Aligned_cols=22 Identities=0% Similarity=-0.322 Sum_probs=18.9
Q ss_pred eeEEEEecccccceeeeeeeccC
Q 028595 5 AKLACLFATQVTSFLLYVLSVSG 27 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~ 27 (207)
..|+++|.+++| |||+.+.+..
T Consensus 14 ~~i~l~G~~GsG-KsT~~~~L~~ 35 (186)
T 2yvu_A 14 IVVWLTGLPGSG-KTTIATRLAD 35 (186)
T ss_dssp EEEEEECCTTSS-HHHHHHHHHH
T ss_pred cEEEEEcCCCCC-HHHHHHHHHH
Confidence 458899999999 9999998853
No 398
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=86.24 E-value=0.099 Score=38.11 Aligned_cols=21 Identities=10% Similarity=-0.048 Sum_probs=18.0
Q ss_pred eEEEEecccccceeeeeeeccC
Q 028595 6 KLACLFATQVTSFLLYVLSVSG 27 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~ 27 (207)
-++++|.+++| ||||++.+..
T Consensus 25 ~~~i~G~~GsG-KTtl~~~l~~ 45 (235)
T 2w0m_A 25 FIALTGEPGTG-KTIFSLHFIA 45 (235)
T ss_dssp EEEEECSTTSS-HHHHHHHHHH
T ss_pred EEEEEcCCCCC-HHHHHHHHHH
Confidence 36788999999 9999999874
No 399
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=86.07 E-value=0.085 Score=39.42 Aligned_cols=22 Identities=14% Similarity=0.007 Sum_probs=19.4
Q ss_pred eEEEEecccccceeeeeeeccCC
Q 028595 6 KLACLFATQVTSFLLYVLSVSGR 28 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~~ 28 (207)
-++++|.+++| ||+|++.+.+.
T Consensus 51 g~ll~G~~G~G-KTtl~~~i~~~ 72 (254)
T 1ixz_A 51 GVLLVGPPGVG-KTHLARAVAGE 72 (254)
T ss_dssp EEEEECCTTSS-HHHHHHHHHHH
T ss_pred eEEEECCCCCC-HHHHHHHHHHH
Confidence 38999999999 99999998753
No 400
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=85.91 E-value=0.11 Score=40.08 Aligned_cols=22 Identities=0% Similarity=-0.289 Sum_probs=18.7
Q ss_pred ceeEEEEecccccceeeeeeecc
Q 028595 4 LAKLACLFATQVTSFLLYVLSVS 26 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~ 26 (207)
...|++.|.+++| ||||++.+.
T Consensus 31 ~~ii~I~G~sGsG-KSTla~~L~ 52 (290)
T 1odf_A 31 PLFIFFSGPQGSG-KSFTSIQIY 52 (290)
T ss_dssp CEEEEEECCTTSS-HHHHHHHHH
T ss_pred CeEEEEECCCCCC-HHHHHHHHH
Confidence 3568999999999 999998764
No 401
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=85.80 E-value=0.15 Score=38.21 Aligned_cols=23 Identities=0% Similarity=-0.415 Sum_probs=19.2
Q ss_pred ceeEEEEecccccceeeeeeeccC
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSG 27 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~ 27 (207)
...|+++|.+++| |||+.+.+..
T Consensus 32 ~~~i~l~G~~GsG-KSTla~~L~~ 54 (253)
T 2p5t_B 32 PIAILLGGQSGAG-KTTIHRIKQK 54 (253)
T ss_dssp CEEEEEESCGGGT-THHHHHHHHH
T ss_pred CeEEEEECCCCCC-HHHHHHHHHH
Confidence 3568899999999 9999988753
No 402
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=85.77 E-value=0.11 Score=36.63 Aligned_cols=21 Identities=5% Similarity=-0.287 Sum_probs=18.6
Q ss_pred eEEEEecccccceeeeeeeccC
Q 028595 6 KLACLFATQVTSFLLYVLSVSG 27 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~ 27 (207)
.|+++|.+++| |||+.+.|..
T Consensus 4 ~I~l~G~~GsG-KsT~a~~La~ 24 (184)
T 2iyv_A 4 KAVLVGLPGSG-KSTIGRRLAK 24 (184)
T ss_dssp SEEEECSTTSS-HHHHHHHHHH
T ss_pred eEEEECCCCCC-HHHHHHHHHH
Confidence 58999999999 9999988854
No 403
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=85.75 E-value=0.11 Score=36.53 Aligned_cols=20 Identities=10% Similarity=-0.350 Sum_probs=17.2
Q ss_pred eEEEEecccccceeeeeeecc
Q 028595 6 KLACLFATQVTSFLLYVLSVS 26 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~ 26 (207)
-.+++|..++| ||||+..+.
T Consensus 28 ~~~i~G~NGsG-KStll~ai~ 47 (182)
T 3kta_A 28 FTAIVGANGSG-KSNIGDAIL 47 (182)
T ss_dssp EEEEEECTTSS-HHHHHHHHH
T ss_pred cEEEECCCCCC-HHHHHHHHH
Confidence 35789999999 999999974
No 404
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=85.74 E-value=0.089 Score=40.09 Aligned_cols=21 Identities=10% Similarity=-0.104 Sum_probs=18.9
Q ss_pred eEEEEecccccceeeeeeeccC
Q 028595 6 KLACLFATQVTSFLLYVLSVSG 27 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~ 27 (207)
-++++|.+++| ||+|++.+.+
T Consensus 46 GvlL~Gp~GtG-KTtLakala~ 66 (274)
T 2x8a_A 46 GVLLAGPPGCG-KTLLAKAVAN 66 (274)
T ss_dssp EEEEESSTTSC-HHHHHHHHHH
T ss_pred eEEEECCCCCc-HHHHHHHHHH
Confidence 38999999999 9999999865
No 405
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=85.63 E-value=0.12 Score=39.66 Aligned_cols=22 Identities=0% Similarity=-0.352 Sum_probs=18.5
Q ss_pred eeEEEEecccccceeeeeeeccC
Q 028595 5 AKLACLFATQVTSFLLYVLSVSG 27 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~ 27 (207)
.-|++.|.+++| |||+.+.+..
T Consensus 34 ~livl~G~sGsG-KSTla~~L~~ 55 (287)
T 1gvn_B 34 TAFLLGGQPGSG-KTSLRSAIFE 55 (287)
T ss_dssp EEEEEECCTTSC-THHHHHHHHH
T ss_pred eEEEEECCCCCC-HHHHHHHHHH
Confidence 457888999999 9999999863
No 406
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=85.57 E-value=1.5 Score=32.59 Aligned_cols=67 Identities=19% Similarity=0.189 Sum_probs=42.2
Q ss_pred EEEEEEEeCCCCccccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhh----cCCCCcEE-EEeeCCCcc
Q 028595 52 TVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQH----YSPGVPVV-LVGTKLDLR 122 (207)
Q Consensus 52 ~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~----~~~~~pii-vv~nK~D~~ 122 (207)
.+.+.|+|+|+.... .....+..+|.+|++...+. .+...+ ..+++.+.. ..++.+++ +|.|+.|..
T Consensus 111 ~yD~iiiD~pp~~~~--~~~~~l~~aD~viiv~~~~~-~s~~~~-~~~~~~l~~~~~~~~~~~~~~gvv~N~~~~~ 182 (257)
T 1wcv_1 111 GYDLVLLDAPPSLSP--LTLNALAAAEGVVVPVQAEY-YALEGV-AGLLATLEEVRAGLNPRLRLLGILVTMYDGR 182 (257)
T ss_dssp TCSEEEEECCSSCCH--HHHHHHHHCSEEEEEEESST-HHHHHH-HHHHHHHHHHHHHTCTTCEEEEEEEESBCTT
T ss_pred CCCEEEEeCCCCCCH--HHHHHHHHCCeEEEEecCch-HHHHHH-HHHHHHHHHHHHHhCCCceEEEEEEEeECCC
Confidence 467889999876432 22344566899999998654 444444 333333332 23567774 899998753
No 407
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=85.52 E-value=0.099 Score=40.08 Aligned_cols=22 Identities=5% Similarity=-0.084 Sum_probs=18.5
Q ss_pred eEEEEecccccceeeeeeeccCC
Q 028595 6 KLACLFATQVTSFLLYVLSVSGR 28 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~~ 28 (207)
-++++|.+++| ||||++.+.+.
T Consensus 37 ~~~i~G~~G~G-KTTl~~~ia~~ 58 (296)
T 1cr0_A 37 VIMVTSGSGMG-KSTFVRQQALQ 58 (296)
T ss_dssp EEEEEESTTSS-HHHHHHHHHHH
T ss_pred EEEEEeCCCCC-HHHHHHHHHHH
Confidence 36889999999 99999998754
No 408
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=85.46 E-value=0.13 Score=35.76 Aligned_cols=23 Identities=4% Similarity=-0.194 Sum_probs=19.5
Q ss_pred ceeEEEEecccccceeeeeeeccC
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSG 27 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~ 27 (207)
+-.|++.|.+++| |||+.+.|..
T Consensus 7 ~~~i~l~G~~GsG-KSTva~~La~ 29 (168)
T 1zuh_A 7 MQHLVLIGFMGSG-KSSLAQELGL 29 (168)
T ss_dssp -CEEEEESCTTSS-HHHHHHHHHH
T ss_pred cceEEEECCCCCC-HHHHHHHHHH
Confidence 4578999999999 9999998854
No 409
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=85.41 E-value=0.11 Score=36.26 Aligned_cols=23 Identities=13% Similarity=-0.042 Sum_probs=19.5
Q ss_pred eeEEEEecccccceeeeeeeccCC
Q 028595 5 AKLACLFATQVTSFLLYVLSVSGR 28 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~~ 28 (207)
..+++.|.+++| ||+|++.+...
T Consensus 44 ~~~ll~G~~G~G-KT~l~~~~~~~ 66 (195)
T 1jbk_A 44 NNPVLIGEPGVG-KTAIVEGLAQR 66 (195)
T ss_dssp CEEEEECCTTSC-HHHHHHHHHHH
T ss_pred CceEEECCCCCC-HHHHHHHHHHH
Confidence 458999999999 99999988643
No 410
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=85.38 E-value=0.54 Score=37.33 Aligned_cols=19 Identities=5% Similarity=-0.246 Sum_probs=16.8
Q ss_pred EEEEecccccceeeeeeecc
Q 028595 7 LACLFATQVTSFLLYVLSVS 26 (207)
Q Consensus 7 i~iiG~~~~GgKssli~~l~ 26 (207)
.+++|..++| ||||++.++
T Consensus 26 ~~i~G~NGaG-KTTll~ai~ 44 (365)
T 3qf7_A 26 TVVEGPNGAG-KSSLFEAIS 44 (365)
T ss_dssp EEEECCTTSS-HHHHHHHHH
T ss_pred EEEECCCCCC-HHHHHHHHH
Confidence 5689999999 999999876
No 411
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=85.21 E-value=0.1 Score=41.52 Aligned_cols=21 Identities=0% Similarity=-0.278 Sum_probs=18.4
Q ss_pred eEEEEecccccceeeeeeeccC
Q 028595 6 KLACLFATQVTSFLLYVLSVSG 27 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~ 27 (207)
-++++|..++| |||+++.+.+
T Consensus 159 vi~lvG~nGsG-KTTll~~Lag 179 (359)
T 2og2_A 159 VIMIVGVNGGG-KTTSLGKLAH 179 (359)
T ss_dssp EEEEECCTTSC-HHHHHHHHHH
T ss_pred EEEEEcCCCCh-HHHHHHHHHh
Confidence 57899999999 9999998863
No 412
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=85.18 E-value=0.1 Score=43.28 Aligned_cols=20 Identities=5% Similarity=-0.140 Sum_probs=18.0
Q ss_pred eEEEEecccccceeeeeeecc
Q 028595 6 KLACLFATQVTSFLLYVLSVS 26 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~ 26 (207)
-++++|.+++| ||||++.+.
T Consensus 295 VI~LVGpNGSG-KTTLl~~LA 314 (503)
T 2yhs_A 295 VILMVGVNGVG-KTTTIGKLA 314 (503)
T ss_dssp EEEEECCTTSS-HHHHHHHHH
T ss_pred EEEEECCCccc-HHHHHHHHH
Confidence 57899999999 999999986
No 413
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=85.12 E-value=0.1 Score=42.35 Aligned_cols=22 Identities=5% Similarity=-0.284 Sum_probs=19.0
Q ss_pred eEEEEecccccceeeeeeeccCC
Q 028595 6 KLACLFATQVTSFLLYVLSVSGR 28 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~~ 28 (207)
-++++|..++| ||||++.+++.
T Consensus 169 ii~I~GpnGSG-KTTlL~allg~ 190 (418)
T 1p9r_A 169 IILVTGPTGSG-KSTTLYAGLQE 190 (418)
T ss_dssp EEEEECSTTSC-HHHHHHHHHHH
T ss_pred eEEEECCCCCC-HHHHHHHHHhh
Confidence 47899999999 99999998754
No 414
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=84.91 E-value=0.17 Score=42.98 Aligned_cols=23 Identities=4% Similarity=-0.278 Sum_probs=20.2
Q ss_pred eeEEEEecccccceeeeeeeccCC
Q 028595 5 AKLACLFATQVTSFLLYVLSVSGR 28 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~~ 28 (207)
-.++++|.+++| ||||++.+.+-
T Consensus 371 ~~~~ivG~sGsG-KSTLl~~l~g~ 393 (595)
T 2yl4_A 371 SVTALVGPSGSG-KSTVLSLLLRL 393 (595)
T ss_dssp CEEEEECCTTSS-STHHHHHHTTS
T ss_pred CEEEEECCCCCC-HHHHHHHHhcC
Confidence 368999999999 99999998754
No 415
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=84.90 E-value=0.18 Score=42.63 Aligned_cols=23 Identities=4% Similarity=-0.198 Sum_probs=19.9
Q ss_pred eeEEEEecccccceeeeeeeccCC
Q 028595 5 AKLACLFATQVTSFLLYVLSVSGR 28 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~~ 28 (207)
-.++++|..++| ||||++.+.+-
T Consensus 368 ~~~~ivG~sGsG-KSTll~~l~g~ 390 (578)
T 4a82_A 368 ETVAFVGMSGGG-KSTLINLIPRF 390 (578)
T ss_dssp CEEEEECSTTSS-HHHHHTTTTTS
T ss_pred CEEEEECCCCCh-HHHHHHHHhcC
Confidence 368999999999 99999988654
No 416
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=84.88 E-value=0.15 Score=42.86 Aligned_cols=22 Identities=9% Similarity=-0.052 Sum_probs=19.8
Q ss_pred eEEEEecccccceeeeeeeccCC
Q 028595 6 KLACLFATQVTSFLLYVLSVSGR 28 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~~ 28 (207)
.++++|..++| ||||++.+.+-
T Consensus 49 ~~~LvG~NGaG-KSTLlk~l~Gl 70 (538)
T 1yqt_A 49 VVGIVGPNGTG-KSTAVKILAGQ 70 (538)
T ss_dssp EEEEECCTTSS-HHHHHHHHHTS
T ss_pred EEEEECCCCCC-HHHHHHHHhCC
Confidence 57899999999 99999998865
No 417
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=84.75 E-value=0.16 Score=42.98 Aligned_cols=23 Identities=4% Similarity=-0.204 Sum_probs=20.2
Q ss_pred eeEEEEecccccceeeeeeeccCC
Q 028595 5 AKLACLFATQVTSFLLYVLSVSGR 28 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~~ 28 (207)
-.++++|.+++| ||||++.+.+-
T Consensus 370 ~~~~ivG~sGsG-KSTLl~~l~g~ 392 (582)
T 3b60_A 370 KTVALVGRSGSG-KSTIASLITRF 392 (582)
T ss_dssp CEEEEEECTTSS-HHHHHHHHTTT
T ss_pred CEEEEECCCCCC-HHHHHHHHhhc
Confidence 368999999999 99999998754
No 418
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=84.64 E-value=0.15 Score=42.86 Aligned_cols=22 Identities=18% Similarity=0.054 Sum_probs=19.3
Q ss_pred eEEEEecccccceeeeeeeccCC
Q 028595 6 KLACLFATQVTSFLLYVLSVSGR 28 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~~ 28 (207)
-++++|..++| ||||++.+.+-
T Consensus 27 i~gLiGpNGaG-KSTLlkiL~Gl 48 (538)
T 3ozx_A 27 ILGVLGKNGVG-KTTVLKILAGE 48 (538)
T ss_dssp EEEEECCTTSS-HHHHHHHHTTS
T ss_pred EEEEECCCCCc-HHHHHHHHhcC
Confidence 36899999999 99999998864
No 419
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=84.58 E-value=0.17 Score=38.67 Aligned_cols=22 Identities=9% Similarity=-0.212 Sum_probs=19.5
Q ss_pred ceeEEEEecccccceeeeeeecc
Q 028595 4 LAKLACLFATQVTSFLLYVLSVS 26 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~ 26 (207)
...|++.|++++| |||+.+.|.
T Consensus 75 ~~iI~I~G~~GSG-KSTva~~La 96 (281)
T 2f6r_A 75 LYVLGLTGISGSG-KSSVAQRLK 96 (281)
T ss_dssp CEEEEEEECTTSC-HHHHHHHHH
T ss_pred CEEEEEECCCCCC-HHHHHHHHH
Confidence 4569999999999 999999886
No 420
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=84.39 E-value=0.14 Score=38.50 Aligned_cols=20 Identities=5% Similarity=-0.242 Sum_probs=17.6
Q ss_pred eEEEEecccccceeeeeeecc
Q 028595 6 KLACLFATQVTSFLLYVLSVS 26 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~ 26 (207)
-|+++|.+++| ||||.+.|.
T Consensus 3 li~I~G~~GSG-KSTla~~La 22 (253)
T 2ze6_A 3 LHLIYGPTCSG-KTDMAIQIA 22 (253)
T ss_dssp EEEEECCTTSS-HHHHHHHHH
T ss_pred EEEEECCCCcC-HHHHHHHHH
Confidence 47899999999 999999875
No 421
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=84.38 E-value=0.17 Score=39.61 Aligned_cols=22 Identities=14% Similarity=-0.037 Sum_probs=19.5
Q ss_pred cceeEEEEecccccceeeeeeec
Q 028595 3 LLAKLACLFATQVTSFLLYVLSV 25 (207)
Q Consensus 3 ~~~ki~iiG~~~~GgKssli~~l 25 (207)
...|++++|...+| |||++.+.
T Consensus 6 ~~~klLlLG~geSG-KSTi~KQm 27 (327)
T 3ohm_A 6 RELKLLLLGTGESG-KSTFIKQM 27 (327)
T ss_dssp CEEEEEEECSTTSS-HHHHHHHH
T ss_pred ccceEEEEcCCCcc-HHHHHHHH
Confidence 46799999999999 99999864
No 422
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=84.33 E-value=0.17 Score=36.42 Aligned_cols=24 Identities=0% Similarity=-0.247 Sum_probs=20.3
Q ss_pred ceeEEEEecccccceeeeeeeccCC
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGR 28 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~ 28 (207)
...|++.|+.++| |||+.+.|...
T Consensus 12 ~~iIgltG~~GSG-KSTva~~L~~~ 35 (192)
T 2grj_A 12 HMVIGVTGKIGTG-KSTVCEILKNK 35 (192)
T ss_dssp EEEEEEECSTTSS-HHHHHHHHHHH
T ss_pred ceEEEEECCCCCC-HHHHHHHHHHh
Confidence 4568999999999 99999988643
No 423
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=84.13 E-value=0.15 Score=37.01 Aligned_cols=22 Identities=0% Similarity=-0.238 Sum_probs=18.8
Q ss_pred eeEEEEecccccceeeeeeeccC
Q 028595 5 AKLACLFATQVTSFLLYVLSVSG 27 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~ 27 (207)
.-|+++|.+++| |||+.+.+..
T Consensus 26 ~~i~~~G~~GsG-KsT~~~~l~~ 47 (211)
T 1m7g_A 26 LTIWLTGLSASG-KSTLAVELEH 47 (211)
T ss_dssp EEEEEECSTTSS-HHHHHHHHHH
T ss_pred CEEEEECCCCCC-HHHHHHHHHH
Confidence 458899999999 9999998753
No 424
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=84.13 E-value=0.12 Score=40.52 Aligned_cols=23 Identities=0% Similarity=-0.162 Sum_probs=19.7
Q ss_pred eeEEEEecccccceeeeeeeccCC
Q 028595 5 AKLACLFATQVTSFLLYVLSVSGR 28 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~~ 28 (207)
..++++|.+++| ||||++.+.+.
T Consensus 52 ~~~ll~Gp~G~G-KTTLa~~ia~~ 74 (334)
T 1in4_A 52 DHVLLAGPPGLG-KTTLAHIIASE 74 (334)
T ss_dssp CCEEEESSTTSS-HHHHHHHHHHH
T ss_pred CeEEEECCCCCc-HHHHHHHHHHH
Confidence 358999999999 99999998753
No 425
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=84.08 E-value=0.16 Score=43.38 Aligned_cols=22 Identities=9% Similarity=0.021 Sum_probs=19.5
Q ss_pred eEEEEecccccceeeeeeeccCC
Q 028595 6 KLACLFATQVTSFLLYVLSVSGR 28 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~~ 28 (207)
-++++|.+++| ||||++.+.+-
T Consensus 105 i~~LvGpNGaG-KSTLLkiL~Gl 126 (608)
T 3j16_B 105 VLGLVGTNGIG-KSTALKILAGK 126 (608)
T ss_dssp EEEEECCTTSS-HHHHHHHHHTS
T ss_pred EEEEECCCCCh-HHHHHHHHhcC
Confidence 47899999999 99999998864
No 426
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=84.03 E-value=0.12 Score=39.22 Aligned_cols=22 Identities=14% Similarity=0.007 Sum_probs=19.4
Q ss_pred eEEEEecccccceeeeeeeccCC
Q 028595 6 KLACLFATQVTSFLLYVLSVSGR 28 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~~ 28 (207)
-++++|.+++| ||+|++.+.+.
T Consensus 75 gvll~Gp~GtG-KTtl~~~i~~~ 96 (278)
T 1iy2_A 75 GVLLVGPPGVG-KTHLARAVAGE 96 (278)
T ss_dssp EEEEECCTTSS-HHHHHHHHHHH
T ss_pred eEEEECCCcCh-HHHHHHHHHHH
Confidence 48999999999 99999998753
No 427
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=83.92 E-value=0.44 Score=44.38 Aligned_cols=35 Identities=14% Similarity=-0.016 Sum_probs=26.5
Q ss_pred eeEEEEecccccceeeeeeeccCCCCCccccCceeeeeeeEEEECC
Q 028595 5 AKLACLFATQVTSFLLYVLSVSGRSSIWDYIPTVFDNFSANVVAEG 50 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~ 50 (207)
-||+++|..++| ||||++.+.+- |.|+.| .+.+||
T Consensus 1106 e~vaIVG~SGsG-KSTL~~lL~rl-----~~p~~G-----~I~iDG 1140 (1321)
T 4f4c_A 1106 QTLALVGPSGCG-KSTVVALLERF-----YDTLGG-----EIFIDG 1140 (1321)
T ss_dssp CEEEEECSTTSS-TTSHHHHHTTS-----SCCSSS-----EEEETT
T ss_pred CEEEEECCCCCh-HHHHHHHHhcC-----ccCCCC-----EEEECC
Confidence 489999999999 99999988643 345544 456676
No 428
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=83.80 E-value=0.22 Score=38.30 Aligned_cols=26 Identities=4% Similarity=-0.157 Sum_probs=16.8
Q ss_pred Ccc-ceeEEEEecccccceeeeeeeccC
Q 028595 1 MEL-LAKLACLFATQVTSFLLYVLSVSG 27 (207)
Q Consensus 1 m~~-~~ki~iiG~~~~GgKssli~~l~~ 27 (207)
|.. ..-|++-|++++| |||+.+.|..
T Consensus 1 Ms~~~~iIgItG~sGSG-KSTva~~L~~ 27 (290)
T 1a7j_A 1 MSKKHPIISVTGSSGAG-TSTVKHTFDQ 27 (290)
T ss_dssp -CTTSCEEEEESCC----CCTHHHHHHH
T ss_pred CCCCceEEEEECCCCCC-HHHHHHHHHH
Confidence 443 3458888999999 9999998764
No 429
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=83.73 E-value=0.18 Score=37.63 Aligned_cols=23 Identities=4% Similarity=-0.266 Sum_probs=19.7
Q ss_pred ceeEEEEecccccceeeeeeeccC
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSG 27 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~ 27 (207)
...|++.|++++| |||+.+.|..
T Consensus 22 ~~iI~I~G~~GSG-KST~a~~L~~ 44 (252)
T 1uj2_A 22 PFLIGVSGGTASG-KSSVCAKIVQ 44 (252)
T ss_dssp CEEEEEECSTTSS-HHHHHHHHHH
T ss_pred cEEEEEECCCCCC-HHHHHHHHHH
Confidence 4569999999999 9999998854
No 430
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=83.73 E-value=0.18 Score=39.96 Aligned_cols=22 Identities=18% Similarity=0.008 Sum_probs=19.6
Q ss_pred ceeEEEEecccccceeeeeeecc
Q 028595 4 LAKLACLFATQVTSFLLYVLSVS 26 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~ 26 (207)
..||+++|..++| ||||++++.
T Consensus 9 ~~k~lllG~~~sG-KsT~~kq~~ 30 (354)
T 2xtz_A 9 IRKLLLLGAGESG-KSTIFKQIK 30 (354)
T ss_dssp EEEEEEECSTTSS-HHHHHHHHH
T ss_pred ceeEEEECCCCCc-HHHHHHHHH
Confidence 5699999999999 999999864
No 431
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=83.72 E-value=0.2 Score=42.63 Aligned_cols=23 Identities=17% Similarity=-0.143 Sum_probs=20.1
Q ss_pred eeEEEEecccccceeeeeeeccCC
Q 028595 5 AKLACLFATQVTSFLLYVLSVSGR 28 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~~ 28 (207)
-.++++|.+++| ||||++.+.+-
T Consensus 382 ~~~~ivG~sGsG-KSTll~~l~g~ 404 (598)
T 3qf4_B 382 QKVALVGPTGSG-KTTIVNLLMRF 404 (598)
T ss_dssp CEEEEECCTTSS-TTHHHHHHTTS
T ss_pred CEEEEECCCCCc-HHHHHHHHhcC
Confidence 478999999999 99999988654
No 432
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=83.67 E-value=0.15 Score=37.45 Aligned_cols=22 Identities=0% Similarity=-0.257 Sum_probs=19.1
Q ss_pred eEEEEecccccceeeeeeeccCC
Q 028595 6 KLACLFATQVTSFLLYVLSVSGR 28 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~~ 28 (207)
-++++|.+++| ||+|+..++..
T Consensus 26 ~~~i~G~~GsG-KTtl~~~l~~~ 47 (243)
T 1n0w_A 26 ITEMFGEFRTG-KTQICHTLAVT 47 (243)
T ss_dssp EEEEECCTTSS-HHHHHHHHHHH
T ss_pred EEEEECCCCCc-HHHHHHHHHHH
Confidence 46889999999 99999999864
No 433
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=83.65 E-value=0.15 Score=35.59 Aligned_cols=22 Identities=14% Similarity=-0.168 Sum_probs=19.0
Q ss_pred eeEEEEecccccceeeeeeeccC
Q 028595 5 AKLACLFATQVTSFLLYVLSVSG 27 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~ 27 (207)
..+++.|.+++| ||+|++.+..
T Consensus 44 ~~vll~G~~G~G-KT~la~~~~~ 65 (187)
T 2p65_A 44 NNPILLGDPGVG-KTAIVEGLAI 65 (187)
T ss_dssp CEEEEESCGGGC-HHHHHHHHHH
T ss_pred CceEEECCCCCC-HHHHHHHHHH
Confidence 468999999999 9999988864
No 434
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=83.64 E-value=0.18 Score=42.67 Aligned_cols=23 Identities=4% Similarity=-0.260 Sum_probs=20.1
Q ss_pred eeEEEEecccccceeeeeeeccCC
Q 028595 5 AKLACLFATQVTSFLLYVLSVSGR 28 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~~ 28 (207)
-.++++|.+++| ||||++.+.+-
T Consensus 370 ~~~~ivG~sGsG-KSTll~~l~g~ 392 (582)
T 3b5x_A 370 KTVALVGRSGSG-KSTIANLFTRF 392 (582)
T ss_pred CEEEEECCCCCC-HHHHHHHHhcC
Confidence 368999999999 99999998764
No 435
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=83.36 E-value=0.23 Score=42.19 Aligned_cols=23 Identities=13% Similarity=-0.120 Sum_probs=20.0
Q ss_pred eeEEEEecccccceeeeeeeccCC
Q 028595 5 AKLACLFATQVTSFLLYVLSVSGR 28 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~~ 28 (207)
-.++++|.+++| ||||++.+.+-
T Consensus 370 e~~~ivG~sGsG-KSTll~~l~g~ 392 (587)
T 3qf4_A 370 SLVAVLGETGSG-KSTLMNLIPRL 392 (587)
T ss_dssp CEEEEECSSSSS-HHHHHHTTTTS
T ss_pred CEEEEECCCCCC-HHHHHHHHhCC
Confidence 368999999999 99999988654
No 436
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=83.34 E-value=0.16 Score=36.71 Aligned_cols=21 Identities=5% Similarity=-0.287 Sum_probs=18.6
Q ss_pred eEEEEecccccceeeeeeeccC
Q 028595 6 KLACLFATQVTSFLLYVLSVSG 27 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~ 27 (207)
-++++|.+++| ||||+..+..
T Consensus 22 ~~~i~G~~GsG-KTtl~~~l~~ 42 (220)
T 2cvh_A 22 LTQVYGPYASG-KTTLALQTGL 42 (220)
T ss_dssp EEEEECSTTSS-HHHHHHHHHH
T ss_pred EEEEECCCCCC-HHHHHHHHHH
Confidence 46889999999 9999999976
No 437
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=83.13 E-value=0.21 Score=35.75 Aligned_cols=21 Identities=5% Similarity=-0.257 Sum_probs=18.6
Q ss_pred eEEEEecccccceeeeeeeccC
Q 028595 6 KLACLFATQVTSFLLYVLSVSG 27 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~ 27 (207)
.|++.|++++| |||+.+.|..
T Consensus 4 ~i~i~G~~GsG-Kst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASG-KSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSS-HHHHHHHHHH
T ss_pred EEEEECCCCCC-HHHHHHHHHH
Confidence 68899999999 9999998864
No 438
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=83.13 E-value=0.19 Score=42.89 Aligned_cols=22 Identities=9% Similarity=-0.040 Sum_probs=19.6
Q ss_pred eEEEEecccccceeeeeeeccCC
Q 028595 6 KLACLFATQVTSFLLYVLSVSGR 28 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~~ 28 (207)
.++++|..++| ||||++.+.+-
T Consensus 119 ~~~LiG~NGsG-KSTLlkiL~Gl 140 (607)
T 3bk7_A 119 VVGIVGPNGTG-KTTAVKILAGQ 140 (607)
T ss_dssp EEEEECCTTSS-HHHHHHHHTTS
T ss_pred EEEEECCCCCh-HHHHHHHHhCC
Confidence 57899999999 99999998864
No 439
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=82.95 E-value=0.15 Score=42.26 Aligned_cols=20 Identities=0% Similarity=-0.345 Sum_probs=17.8
Q ss_pred eEEEEecccccceeeeeeecc
Q 028595 6 KLACLFATQVTSFLLYVLSVS 26 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~ 26 (207)
-++++|.+++| ||||++.+.
T Consensus 31 ~~~liG~nGsG-KSTLl~~l~ 50 (483)
T 3euj_A 31 VTTLSGGNGAG-KSTTMAGFV 50 (483)
T ss_dssp EEEEECCTTSS-HHHHHHHHH
T ss_pred eEEEECCCCCc-HHHHHHHHh
Confidence 47899999999 999999876
No 440
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=82.86 E-value=0.21 Score=39.35 Aligned_cols=22 Identities=9% Similarity=-0.111 Sum_probs=18.4
Q ss_pred eeEEEEecccccceeeeeeeccC
Q 028595 5 AKLACLFATQVTSFLLYVLSVSG 27 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~ 27 (207)
.-|+|.|+.++| ||||...|..
T Consensus 8 ~lI~I~GptgSG-KTtla~~La~ 29 (340)
T 3d3q_A 8 FLIVIVGPTASG-KTELSIEVAK 29 (340)
T ss_dssp EEEEEECSTTSS-HHHHHHHHHH
T ss_pred ceEEEECCCcCc-HHHHHHHHHH
Confidence 358899999999 9999988764
No 441
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=82.77 E-value=0.17 Score=37.98 Aligned_cols=22 Identities=0% Similarity=-0.325 Sum_probs=19.4
Q ss_pred eeEEEEecccccceeeeeeeccC
Q 028595 5 AKLACLFATQVTSFLLYVLSVSG 27 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~ 27 (207)
..|+++|.+++| |||+.+.+..
T Consensus 49 ~~i~l~G~~GsG-KSTl~~~La~ 70 (250)
T 3nwj_A 49 RSMYLVGMMGSG-KTTVGKIMAR 70 (250)
T ss_dssp CCEEEECSTTSC-HHHHHHHHHH
T ss_pred CEEEEECCCCCC-HHHHHHHHHH
Confidence 468999999999 9999998854
No 442
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=82.56 E-value=0.2 Score=42.04 Aligned_cols=23 Identities=9% Similarity=0.031 Sum_probs=19.9
Q ss_pred eEEEEecccccceeeeeeeccCCC
Q 028595 6 KLACLFATQVTSFLLYVLSVSGRS 29 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~~~ 29 (207)
-++++|..++| ||||++.+.+-.
T Consensus 296 i~~i~G~nGsG-KSTLl~~l~Gl~ 318 (538)
T 3ozx_A 296 IIGILGPNGIG-KTTFARILVGEI 318 (538)
T ss_dssp EEEEECCTTSS-HHHHHHHHTTSS
T ss_pred EEEEECCCCCC-HHHHHHHHhCCC
Confidence 47899999999 999999998653
No 443
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=82.52 E-value=0.22 Score=39.43 Aligned_cols=22 Identities=23% Similarity=-0.073 Sum_probs=19.6
Q ss_pred cceeEEEEecccccceeeeeeec
Q 028595 3 LLAKLACLFATQVTSFLLYVLSV 25 (207)
Q Consensus 3 ~~~ki~iiG~~~~GgKssli~~l 25 (207)
...|++++|...+| |||+++++
T Consensus 31 ~~~klLlLG~geSG-KST~~KQm 52 (353)
T 1cip_A 31 REVKLLLLGAGESG-KSTIVKQM 52 (353)
T ss_dssp CEEEEEEECSTTSS-HHHHHHHH
T ss_pred ccceEEEEcCCCCC-chhHHHHH
Confidence 36799999999999 99998875
No 444
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=82.16 E-value=1.5 Score=32.73 Aligned_cols=66 Identities=15% Similarity=0.010 Sum_probs=41.4
Q ss_pred EEEEEEEeCCCCccccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEE-EEeeCCCc
Q 028595 52 TVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVV-LVGTKLDL 121 (207)
Q Consensus 52 ~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~pii-vv~nK~D~ 121 (207)
.+.+.|+|+|+...........+..+|.+|++...+. .+...+ ...++.+... +.+++ +|.|+.|.
T Consensus 128 ~yD~ViID~pp~~~~~~~~~~~~~~aD~viiv~~~~~-~s~~~~-~~~~~~l~~~--~~~~~gvV~N~~~~ 194 (262)
T 2ph1_A 128 ELDHLLIDLPPGTGDAPLTVMQDAKPTGVVVVSTPQE-LTAVIV-EKAINMAEET--NTSVLGLVENMSYF 194 (262)
T ss_dssp SCSEEEEECCSSSSSHHHHHHHHHCCSEEEEEECSSS-CCHHHH-HHHHHHHHTT--TCCEEEEEETTCCE
T ss_pred CCCEEEEECcCCCchHHHHHHhhccCCeEEEEecCcc-chHHHH-HHHHHHHHhC--CCCEEEEEECCCcc
Confidence 4678899998854321111111235899999987653 445555 4556666543 56776 99999874
No 445
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=82.02 E-value=0.25 Score=38.98 Aligned_cols=22 Identities=5% Similarity=-0.217 Sum_probs=19.2
Q ss_pred cceeEEEEecccccceeeeeeec
Q 028595 3 LLAKLACLFATQVTSFLLYVLSV 25 (207)
Q Consensus 3 ~~~ki~iiG~~~~GgKssli~~l 25 (207)
...|++++|...+| |||++++.
T Consensus 4 ~~~klLLLG~geSG-KSTi~KQm 25 (340)
T 4fid_A 4 KPITVMLLGSGESG-KSTIAKQL 25 (340)
T ss_dssp CCEEEEEEECTTSS-HHHHHHHH
T ss_pred CcceEEEECCCCCc-HHHHHHHH
Confidence 35799999999999 99998764
No 446
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=81.94 E-value=0.26 Score=36.22 Aligned_cols=20 Identities=5% Similarity=-0.277 Sum_probs=17.0
Q ss_pred EEEEecccccceeeeeeeccC
Q 028595 7 LACLFATQVTSFLLYVLSVSG 27 (207)
Q Consensus 7 i~iiG~~~~GgKssli~~l~~ 27 (207)
|+++|++++| |+|...+|..
T Consensus 32 I~llGpPGsG-KgTqa~~L~~ 51 (217)
T 3umf_A 32 IFVLGGPGSG-KGTQCEKLVQ 51 (217)
T ss_dssp EEEECCTTCC-HHHHHHHHHH
T ss_pred EEEECCCCCC-HHHHHHHHHH
Confidence 5678999999 9999988764
No 447
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=81.83 E-value=0.25 Score=36.54 Aligned_cols=24 Identities=0% Similarity=-0.405 Sum_probs=17.0
Q ss_pred cceeEEEEecccccceeeeeeeccC
Q 028595 3 LLAKLACLFATQVTSFLLYVLSVSG 27 (207)
Q Consensus 3 ~~~ki~iiG~~~~GgKssli~~l~~ 27 (207)
.-.-|++.|.+++| |||+++.+..
T Consensus 24 ~g~~I~~eG~~GsG-KsT~~~~l~~ 47 (227)
T 3v9p_A 24 RGKFITFEGIDGAG-KTTHLQWFCD 47 (227)
T ss_dssp CCCEEEEECCC----CHHHHHHHHH
T ss_pred CCeEEEEECCCCCC-HHHHHHHHHH
Confidence 34568999999999 9999998853
No 448
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=81.77 E-value=0.28 Score=39.59 Aligned_cols=22 Identities=18% Similarity=-0.056 Sum_probs=19.9
Q ss_pred cceeEEEEecccccceeeeeeec
Q 028595 3 LLAKLACLFATQVTSFLLYVLSV 25 (207)
Q Consensus 3 ~~~ki~iiG~~~~GgKssli~~l 25 (207)
...|++++|...+| |||++.+.
T Consensus 39 ~~~klLLLG~geSG-KSTi~KQm 60 (402)
T 1azs_C 39 ATHRLLLLGAGESG-KSTIVKQM 60 (402)
T ss_dssp TEEEEEEEESTTSS-HHHHHHHH
T ss_pred ccceEEEecCCCCc-hhhHHHHH
Confidence 46899999999999 99999885
No 449
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=81.65 E-value=0.2 Score=36.52 Aligned_cols=22 Identities=0% Similarity=-0.165 Sum_probs=19.3
Q ss_pred eeEEEEecccccceeeeeeeccC
Q 028595 5 AKLACLFATQVTSFLLYVLSVSG 27 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~ 27 (207)
..+++.|.+++| ||+|++.+..
T Consensus 53 ~~~ll~G~~G~G-KT~la~~l~~ 74 (242)
T 3bos_A 53 QAIYLWGPVKSG-RTHLIHAACA 74 (242)
T ss_dssp SEEEEECSTTSS-HHHHHHHHHH
T ss_pred CeEEEECCCCCC-HHHHHHHHHH
Confidence 468999999999 9999998864
No 450
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=81.59 E-value=2.3 Score=31.36 Aligned_cols=66 Identities=12% Similarity=0.048 Sum_probs=46.9
Q ss_pred EEEEEEEeCCCCccccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC-------CCCcEEEEeeCCCc
Q 028595 52 TVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYS-------PGVPVVLVGTKLDL 121 (207)
Q Consensus 52 ~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-------~~~piivv~nK~D~ 121 (207)
.+.+.|+|+|+... ......+..+|.+|++... +..+...+ ..++..+.... +..++.+|.|+.+.
T Consensus 113 ~yD~viiD~p~~~~--~~~~~~l~~ad~vi~v~~~-~~~s~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~v~N~~~~ 185 (260)
T 3q9l_A 113 DFEFIVCDSPAGIE--TGALMALYFADEAIITTNP-EVSSVRDS-DRILGILASKSRRAENGEEPIKEHLLLTRYNP 185 (260)
T ss_dssp TCSEEEEECCSSSS--HHHHHHHHTCSEEEEEECS-SHHHHHHH-HHHHHHHTTSSHHHHTTCSCCEEEEEEEEECH
T ss_pred CCCEEEEcCCCCCC--HHHHHHHHhCCEEEEEecC-ChhHHHHH-HHHHHHHHHhccccccccCCcceEEEEecCCc
Confidence 47789999987543 2445566789999999885 56677776 66777776543 22567899999885
No 451
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=81.27 E-value=0.22 Score=38.07 Aligned_cols=22 Identities=0% Similarity=-0.179 Sum_probs=19.1
Q ss_pred eeEEEEecccccceeeeeeeccC
Q 028595 5 AKLACLFATQVTSFLLYVLSVSG 27 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~ 27 (207)
.-|++.|.+++| |||+.+.|..
T Consensus 3 ~~I~l~G~~GsG-KST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSG-KSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSS-HHHHHHHHHH
T ss_pred eEEEEECCCCCC-HHHHHHHHHH
Confidence 358899999999 9999998875
No 452
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=81.16 E-value=0.19 Score=34.45 Aligned_cols=19 Identities=0% Similarity=-0.314 Sum_probs=16.1
Q ss_pred EEEEecccccceeeeeeecc
Q 028595 7 LACLFATQVTSFLLYVLSVS 26 (207)
Q Consensus 7 i~iiG~~~~GgKssli~~l~ 26 (207)
.+++|..++| ||+|+..+.
T Consensus 26 ~~I~G~NGsG-KStil~Ai~ 44 (149)
T 1f2t_A 26 NLIIGQNGSG-KSSLLDAIL 44 (149)
T ss_dssp EEEECCTTSS-HHHHHHHHH
T ss_pred EEEECCCCCC-HHHHHHHHH
Confidence 4788888888 999999875
No 453
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=80.79 E-value=0.25 Score=42.16 Aligned_cols=23 Identities=9% Similarity=0.085 Sum_probs=20.1
Q ss_pred eEEEEecccccceeeeeeeccCCC
Q 028595 6 KLACLFATQVTSFLLYVLSVSGRS 29 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~~~ 29 (207)
.++++|..++| ||||++.+.+-.
T Consensus 384 i~~i~G~NGsG-KSTLlk~l~Gl~ 406 (607)
T 3bk7_A 384 VIGIVGPNGIG-KTTFVKMLAGVE 406 (607)
T ss_dssp EEEEECCTTSS-HHHHHHHHHTSS
T ss_pred EEEEECCCCCC-HHHHHHHHhcCC
Confidence 57899999999 999999998753
No 454
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=80.61 E-value=0.23 Score=35.50 Aligned_cols=22 Identities=9% Similarity=-0.094 Sum_probs=19.3
Q ss_pred eeEEEEecccccceeeeeeeccC
Q 028595 5 AKLACLFATQVTSFLLYVLSVSG 27 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~ 27 (207)
..+++.|.+++| ||+|+..+..
T Consensus 55 ~~~~l~G~~GtG-KT~la~~i~~ 76 (202)
T 2w58_A 55 KGLYLHGSFGVG-KTYLLAAIAN 76 (202)
T ss_dssp CEEEEECSTTSS-HHHHHHHHHH
T ss_pred CeEEEECCCCCC-HHHHHHHHHH
Confidence 568999999999 9999988764
No 455
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=80.60 E-value=0.24 Score=37.53 Aligned_cols=21 Identities=10% Similarity=-0.059 Sum_probs=18.2
Q ss_pred eEEEEecccccceeeeeeeccC
Q 028595 6 KLACLFATQVTSFLLYVLSVSG 27 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~ 27 (207)
-++++|.+++| ||||+..+..
T Consensus 32 i~~i~G~~GsG-KTtl~~~l~~ 52 (279)
T 1nlf_A 32 VGALVSPGGAG-KSMLALQLAA 52 (279)
T ss_dssp EEEEEESTTSS-HHHHHHHHHH
T ss_pred EEEEEcCCCCC-HHHHHHHHHH
Confidence 46889999999 9999999874
No 456
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=80.42 E-value=0.28 Score=41.19 Aligned_cols=23 Identities=9% Similarity=0.085 Sum_probs=20.2
Q ss_pred eEEEEecccccceeeeeeeccCCC
Q 028595 6 KLACLFATQVTSFLLYVLSVSGRS 29 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~~~ 29 (207)
.++++|..++| ||||++.+.+-.
T Consensus 314 ~~~i~G~NGsG-KSTLlk~l~Gl~ 336 (538)
T 1yqt_A 314 VIGIVGPNGIG-KTTFVKMLAGVE 336 (538)
T ss_dssp EEEEECCTTSS-HHHHHHHHHTSS
T ss_pred EEEEECCCCCC-HHHHHHHHhCCC
Confidence 57899999999 999999998753
No 457
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=80.41 E-value=0.27 Score=35.03 Aligned_cols=21 Identities=5% Similarity=-0.148 Sum_probs=18.8
Q ss_pred EEEEecccccceeeeeeeccCC
Q 028595 7 LACLFATQVTSFLLYVLSVSGR 28 (207)
Q Consensus 7 i~iiG~~~~GgKssli~~l~~~ 28 (207)
+.|+|++++| ||+|..++...
T Consensus 2 ilV~Gg~~SG-KS~~A~~la~~ 22 (180)
T 1c9k_A 2 ILVTGGARSG-KSRHAEALIGD 22 (180)
T ss_dssp EEEEECTTSS-HHHHHHHHHCS
T ss_pred EEEECCCCCc-HHHHHHHHHhc
Confidence 6899999999 99999998754
No 458
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=79.84 E-value=0.27 Score=41.90 Aligned_cols=22 Identities=9% Similarity=-0.013 Sum_probs=19.5
Q ss_pred EEEEecccccceeeeeeeccCCC
Q 028595 7 LACLFATQVTSFLLYVLSVSGRS 29 (207)
Q Consensus 7 i~iiG~~~~GgKssli~~l~~~~ 29 (207)
++++|..++| ||||++.+.+-.
T Consensus 381 v~iiG~NGsG-KSTLlk~l~Gl~ 402 (608)
T 3j16_B 381 LVMMGENGTG-KTTLIKLLAGAL 402 (608)
T ss_dssp EEEESCTTSS-HHHHHHHHHTSS
T ss_pred EEEECCCCCc-HHHHHHHHhcCC
Confidence 6899999999 999999998654
No 459
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=79.69 E-value=0.26 Score=35.72 Aligned_cols=21 Identities=5% Similarity=-0.279 Sum_probs=18.4
Q ss_pred eEEEEecccccceeeeeeeccC
Q 028595 6 KLACLFATQVTSFLLYVLSVSG 27 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~ 27 (207)
-+++.|.+++| ||+|++.+..
T Consensus 47 ~~ll~G~~G~G-KT~l~~~~~~ 67 (250)
T 1njg_A 47 AYLFSGTRGVG-KTSIARLLAK 67 (250)
T ss_dssp EEEEECSTTSC-HHHHHHHHHH
T ss_pred EEEEECCCCCC-HHHHHHHHHH
Confidence 47899999999 9999998863
No 460
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=79.68 E-value=0.22 Score=39.84 Aligned_cols=22 Identities=0% Similarity=-0.318 Sum_probs=19.1
Q ss_pred eeEEEEecccccceeeeeeeccC
Q 028595 5 AKLACLFATQVTSFLLYVLSVSG 27 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~ 27 (207)
.-++++|.+++| ||||++.+.+
T Consensus 170 ~~i~l~G~~GsG-KSTl~~~l~~ 191 (377)
T 1svm_A 170 RYWLFKGPIDSG-KTTLAAALLE 191 (377)
T ss_dssp CEEEEECSTTSS-HHHHHHHHHH
T ss_pred CEEEEECCCCCC-HHHHHHHHHh
Confidence 368899999999 9999998874
No 461
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=79.63 E-value=0.27 Score=36.67 Aligned_cols=22 Identities=9% Similarity=0.039 Sum_probs=19.4
Q ss_pred eeEEEEecccccceeeeeeeccC
Q 028595 5 AKLACLFATQVTSFLLYVLSVSG 27 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~ 27 (207)
..+++.|.+++| ||+|++.+.+
T Consensus 46 ~~vll~G~~GtG-KT~la~~la~ 67 (257)
T 1lv7_A 46 KGVLMVGPPGTG-KTLLAKAIAG 67 (257)
T ss_dssp CEEEEECCTTSC-HHHHHHHHHH
T ss_pred CeEEEECcCCCC-HHHHHHHHHH
Confidence 468999999999 9999999864
No 462
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=79.44 E-value=0.29 Score=36.23 Aligned_cols=22 Identities=14% Similarity=-0.011 Sum_probs=19.0
Q ss_pred eeEEEEecccccceeeeeeeccC
Q 028595 5 AKLACLFATQVTSFLLYVLSVSG 27 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~ 27 (207)
..|++-|.+++| |||+++.|..
T Consensus 3 ~~i~~~G~~g~G-Ktt~~~~l~~ 24 (241)
T 2ocp_A 3 RRLSIEGNIAVG-KSTFVKLLTK 24 (241)
T ss_dssp EEEEEEECTTSS-HHHHHHHHHH
T ss_pred eEEEEEcCCCCC-HHHHHHHHHH
Confidence 458999999999 9999998864
No 463
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=79.02 E-value=0.39 Score=35.22 Aligned_cols=26 Identities=4% Similarity=-0.349 Sum_probs=20.9
Q ss_pred CccceeEEEEecccccceeeeeeeccC
Q 028595 1 MELLAKLACLFATQVTSFLLYVLSVSG 27 (207)
Q Consensus 1 m~~~~ki~iiG~~~~GgKssli~~l~~ 27 (207)
|....-|++-|.+++| |||+++.+..
T Consensus 2 m~~g~~i~~eG~~g~G-Kst~~~~l~~ 27 (216)
T 3tmk_A 2 MGRGKLILIEGLDRTG-KTTQCNILYK 27 (216)
T ss_dssp CCCCCEEEEEECSSSS-HHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCC-HHHHHHHHHH
Confidence 3344568999999999 9999999864
No 464
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=78.94 E-value=0.32 Score=35.85 Aligned_cols=22 Identities=5% Similarity=-0.207 Sum_probs=19.4
Q ss_pred eeEEEEecccccceeeeeeeccC
Q 028595 5 AKLACLFATQVTSFLLYVLSVSG 27 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~ 27 (207)
..|+++|.+++| |||+.+.|..
T Consensus 17 ~~i~i~G~~gsG-Kst~~~~l~~ 38 (236)
T 1q3t_A 17 IQIAIDGPASSG-KSTVAKIIAK 38 (236)
T ss_dssp CEEEEECSSCSS-HHHHHHHHHH
T ss_pred cEEEEECCCCCC-HHHHHHHHHH
Confidence 478999999999 9999998864
No 465
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=78.81 E-value=0.31 Score=43.80 Aligned_cols=24 Identities=0% Similarity=-0.126 Sum_probs=20.9
Q ss_pred eEEEEecccccceeeeeeeccCCCC
Q 028595 6 KLACLFATQVTSFLLYVLSVSGRSS 30 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~~~~ 30 (207)
.++++|..++| ||||++.+.++.+
T Consensus 463 ~v~LiGpNGsG-KSTLLk~LagG~i 486 (986)
T 2iw3_A 463 RYGICGPNGCG-KSTLMRAIANGQV 486 (986)
T ss_dssp EEEEECSTTSS-HHHHHHHHHHTCS
T ss_pred EEEEECCCCCC-HHHHHHHHhCCCc
Confidence 57899999999 9999999986653
No 466
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=78.69 E-value=0.3 Score=35.86 Aligned_cols=20 Identities=0% Similarity=-0.205 Sum_probs=16.9
Q ss_pred eEEEEecccccceeeeeeecc
Q 028595 6 KLACLFATQVTSFLLYVLSVS 26 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~ 26 (207)
-++++|.+++| ||+|+.+++
T Consensus 25 ~~~i~G~~GsG-KTtl~~~~~ 44 (247)
T 2dr3_A 25 VVLLSGGPGTG-KTIFSQQFL 44 (247)
T ss_dssp EEEEEECTTSS-HHHHHHHHH
T ss_pred EEEEECCCCCC-HHHHHHHHH
Confidence 36889999999 999987775
No 467
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=78.37 E-value=0.45 Score=32.12 Aligned_cols=23 Identities=4% Similarity=-0.177 Sum_probs=19.8
Q ss_pred eeEEEEecccccceeeeeeeccCC
Q 028595 5 AKLACLFATQVTSFLLYVLSVSGR 28 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~~ 28 (207)
..|++.|.+++| ||++.+.+...
T Consensus 28 ~~vll~G~~GtG-Kt~lA~~i~~~ 50 (143)
T 3co5_A 28 SPVFLTGEAGSP-FETVARYFHKN 50 (143)
T ss_dssp SCEEEEEETTCC-HHHHHGGGCCT
T ss_pred CcEEEECCCCcc-HHHHHHHHHHh
Confidence 468999999999 99999988654
No 468
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=78.34 E-value=0.35 Score=35.13 Aligned_cols=24 Identities=13% Similarity=-0.104 Sum_probs=20.0
Q ss_pred eeEEEEecccccceeeeeeeccCCC
Q 028595 5 AKLACLFATQVTSFLLYVLSVSGRS 29 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~~~ 29 (207)
.-|+++|.+++| ||+|...|...-
T Consensus 35 ~~ilI~GpsGsG-KStLA~~La~~g 58 (205)
T 2qmh_A 35 LGVLITGDSGVG-KSETALELVQRG 58 (205)
T ss_dssp EEEEEECCCTTT-THHHHHHHHTTT
T ss_pred EEEEEECCCCCC-HHHHHHHHHHhC
Confidence 348899999999 999999987553
No 469
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=78.25 E-value=0.93 Score=42.27 Aligned_cols=23 Identities=4% Similarity=-0.169 Sum_probs=19.9
Q ss_pred eeEEEEecccccceeeeeeeccCC
Q 028595 5 AKLACLFATQVTSFLLYVLSVSGR 28 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~~ 28 (207)
-+++++|..++| ||||++.+.+-
T Consensus 445 ~~vaivG~sGsG-KSTll~ll~~~ 467 (1321)
T 4f4c_A 445 QTVALVGSSGCG-KSTIISLLLRY 467 (1321)
T ss_dssp CEEEEEECSSSC-HHHHHHHHTTS
T ss_pred cEEEEEecCCCc-HHHHHHHhccc
Confidence 478999999999 99999988643
No 470
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=78.16 E-value=0.32 Score=37.45 Aligned_cols=85 Identities=14% Similarity=0.046 Sum_probs=45.7
Q ss_pred EEEEEEEeCCCCccccc--cc--cceec--CCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCcccCc
Q 028595 52 TVNLGLWDTAGQEDYNR--LR--PLSYR--GADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDLREDK 125 (207)
Q Consensus 52 ~~~l~i~D~~G~~~~~~--~~--~~~~~--~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~~~~~ 125 (207)
.+.+.|.||+|...... +. ...+. ..+.+++|.|.+.. ...+ ..+...+... + ..-+|.||.|....
T Consensus 182 ~~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~--~~~~-~~~~~~~~~l--~-~~giVltk~D~~~~- 254 (296)
T 2px0_A 182 EYDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAK--YEDM-KHIVKRFSSV--P-VNQYIFTKIDETTS- 254 (296)
T ss_dssp GSSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBC--HHHH-HHHTTTTSSS--C-CCEEEEECTTTCSC-
T ss_pred CCCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCC--HHHH-HHHHHHHhcC--C-CCEEEEeCCCcccc-
Confidence 35688999999664321 11 01121 35778888887643 2333 3333333211 2 23466799996432
Q ss_pred ccccCCCCCcccCHHHHHHHHHHhCCcEEEEe
Q 028595 126 HYLADHPGLVPVTTAQGEELRKQIGASYYIEC 157 (207)
Q Consensus 126 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~ 157 (207)
...+...+...+. |...+
T Consensus 255 -------------~g~~~~~~~~~~~-pi~~i 272 (296)
T 2px0_A 255 -------------LGSVFNILAESKI-GVGFM 272 (296)
T ss_dssp -------------CHHHHHHHHTCSC-CCSEE
T ss_pred -------------hhHHHHHHHHHCc-CEEEE
Confidence 2355667777776 54333
No 471
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=77.74 E-value=0.77 Score=35.40 Aligned_cols=21 Identities=0% Similarity=-0.198 Sum_probs=17.0
Q ss_pred eEEEEec-ccccceeeeeeeccC
Q 028595 6 KLACLFA-TQVTSFLLYVLSVSG 27 (207)
Q Consensus 6 ki~iiG~-~~~GgKssli~~l~~ 27 (207)
.++++|+ +++| ||++++.+..
T Consensus 49 ~~~L~~G~~G~G-KT~la~~la~ 70 (324)
T 3u61_B 49 HIILHSPSPGTG-KTTVAKALCH 70 (324)
T ss_dssp SEEEECSSTTSS-HHHHHHHHHH
T ss_pred eEEEeeCcCCCC-HHHHHHHHHH
Confidence 4667777 8888 9999999854
No 472
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=77.28 E-value=0.36 Score=38.12 Aligned_cols=22 Identities=0% Similarity=-0.307 Sum_probs=19.0
Q ss_pred eEEEEecccccceeeeeeeccCC
Q 028595 6 KLACLFATQVTSFLLYVLSVSGR 28 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~~ 28 (207)
-+.++|.+++| ||||++.++..
T Consensus 133 i~~I~G~~GsG-KTTL~~~l~~~ 154 (349)
T 1pzn_A 133 ITEVFGEFGSG-KTQLAHTLAVM 154 (349)
T ss_dssp EEEEEESTTSS-HHHHHHHHHHH
T ss_pred EEEEECCCCCC-HHHHHHHHHHH
Confidence 46789999999 99999998754
No 473
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=77.12 E-value=0.39 Score=39.56 Aligned_cols=23 Identities=9% Similarity=0.039 Sum_probs=19.8
Q ss_pred eeEEEEecccccceeeeeeeccCC
Q 028595 5 AKLACLFATQVTSFLLYVLSVSGR 28 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~~ 28 (207)
-+++++|++++| ||+|++.+..+
T Consensus 152 q~~~i~G~sGvG-KTtL~~~l~~~ 174 (473)
T 1sky_E 152 GKIGLFGGAGVG-KTVLIQELIHN 174 (473)
T ss_dssp CEEEEECCSSSC-HHHHHHHHHHH
T ss_pred CEEEEECCCCCC-ccHHHHHHHhh
Confidence 368999999999 99999987643
No 474
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=76.84 E-value=0.36 Score=37.34 Aligned_cols=22 Identities=0% Similarity=-0.179 Sum_probs=19.2
Q ss_pred eeEEEEecccccceeeeeeeccC
Q 028595 5 AKLACLFATQVTSFLLYVLSVSG 27 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~ 27 (207)
..+++.|++++| ||+|++.+.+
T Consensus 38 ~~lll~G~~GtG-KT~la~~i~~ 59 (324)
T 1l8q_A 38 NPIFIYGSVGTG-KTHLLQAAGN 59 (324)
T ss_dssp SSEEEECSSSSS-HHHHHHHHHH
T ss_pred CeEEEECCCCCc-HHHHHHHHHH
Confidence 358899999999 9999998864
No 475
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=76.76 E-value=0.38 Score=37.78 Aligned_cols=22 Identities=14% Similarity=-0.191 Sum_probs=19.3
Q ss_pred eeEEEEecccccceeeeeeeccC
Q 028595 5 AKLACLFATQVTSFLLYVLSVSG 27 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~ 27 (207)
.-+++.|.+++| ||+|++.+.+
T Consensus 46 ~~vli~G~~G~G-KTtl~~~l~~ 67 (386)
T 2qby_A 46 NNIFIYGLTGTG-KTAVVKFVLS 67 (386)
T ss_dssp CCEEEEECTTSS-HHHHHHHHHH
T ss_pred CeEEEECCCCCC-HHHHHHHHHH
Confidence 358899999999 9999999874
No 476
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=76.55 E-value=0.38 Score=36.38 Aligned_cols=23 Identities=9% Similarity=-0.084 Sum_probs=19.7
Q ss_pred eeEEEEecccccceeeeeeeccCC
Q 028595 5 AKLACLFATQVTSFLLYVLSVSGR 28 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~~ 28 (207)
..+++.|.+++| ||+|++.+...
T Consensus 52 ~~~ll~G~~GtG-KT~la~~la~~ 74 (285)
T 3h4m_A 52 KGILLYGPPGTG-KTLLAKAVATE 74 (285)
T ss_dssp SEEEEESSSSSS-HHHHHHHHHHH
T ss_pred CeEEEECCCCCc-HHHHHHHHHHH
Confidence 468999999999 99999998643
No 477
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=76.42 E-value=0.45 Score=37.21 Aligned_cols=21 Identities=5% Similarity=-0.058 Sum_probs=18.0
Q ss_pred eEEEEecccccceeeeeeeccC
Q 028595 6 KLACLFATQVTSFLLYVLSVSG 27 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~ 27 (207)
.|+++|..++| ||||...+..
T Consensus 7 ~i~i~GptGsG-KTtla~~La~ 27 (323)
T 3crm_A 7 AIFLMGPTAAG-KTDLAMALAD 27 (323)
T ss_dssp EEEEECCTTSC-HHHHHHHHHH
T ss_pred EEEEECCCCCC-HHHHHHHHHH
Confidence 58889999999 9999988763
No 478
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=76.41 E-value=4.9 Score=29.67 Aligned_cols=64 Identities=13% Similarity=0.057 Sum_probs=42.6
Q ss_pred EEEEEEeCCCCccccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCCc
Q 028595 53 VNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLDL 121 (207)
Q Consensus 53 ~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D~ 121 (207)
+.+.|+|+|+... ......+..+|.+|++... +..+...+ ..++..+... .-.++-+|.|+.+.
T Consensus 111 yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~-~~~~~~~~-~~~~~~l~~~-~~~~~~vv~N~~~~ 174 (263)
T 1hyq_A 111 TDILLLDAPAGLE--RSAVIAIAAAQELLLVVNP-EISSITDG-LKTKIVAERL-GTKVLGVVVNRITT 174 (263)
T ss_dssp CSEEEEECCSSSS--HHHHHHHHHSSEEEEEECS-SHHHHHHH-HHHHHHHHHH-TCEEEEEEEEEECT
T ss_pred CCEEEEeCCCCCC--hHHHHHHHHCCEEEEEeCC-ChhHHHHH-HHHHHHHHhc-CCCeeEEEEccCCc
Confidence 6788999987543 2234456678999999875 44566666 5666666554 12345689999885
No 479
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=76.41 E-value=0.32 Score=43.73 Aligned_cols=23 Identities=9% Similarity=0.073 Sum_probs=20.3
Q ss_pred eEEEEecccccceeeeeeeccCCC
Q 028595 6 KLACLFATQVTSFLLYVLSVSGRS 29 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~~~ 29 (207)
.++++|..++| ||||++.+.+-.
T Consensus 701 ivaIiGpNGSG-KSTLLklLaGll 723 (986)
T 2iw3_A 701 RIAVIGPNGAG-KSTLINVLTGEL 723 (986)
T ss_dssp EEEECSCCCHH-HHHHHHHHTTSS
T ss_pred EEEEECCCCCC-HHHHHHHHhCCC
Confidence 68999999999 999999998653
No 480
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=76.14 E-value=0.47 Score=40.85 Aligned_cols=20 Identities=15% Similarity=-0.195 Sum_probs=17.2
Q ss_pred eEEEEecccccceeeeeeecc
Q 028595 6 KLACLFATQVTSFLLYVLSVS 26 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~ 26 (207)
.++++|.+++| ||||++.+.
T Consensus 350 ~vaIiGpnGsG-KSTLl~~i~ 369 (670)
T 3ux8_A 350 FVAVTGVSGSG-KSTLVNEVL 369 (670)
T ss_dssp EEEEECSTTSS-HHHHHTTTH
T ss_pred EEEEEeeCCCC-HHHHHHHHH
Confidence 47899999999 999998653
No 481
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=76.01 E-value=0.4 Score=36.51 Aligned_cols=22 Identities=14% Similarity=-0.081 Sum_probs=19.4
Q ss_pred eeEEEEecccccceeeeeeeccC
Q 028595 5 AKLACLFATQVTSFLLYVLSVSG 27 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~ 27 (207)
.-+++.|.+++| ||+|++.+.+
T Consensus 55 ~~vll~Gp~GtG-KT~la~~la~ 76 (297)
T 3b9p_A 55 KGLLLFGPPGNG-KTLLARAVAT 76 (297)
T ss_dssp SEEEEESSSSSC-HHHHHHHHHH
T ss_pred CeEEEECcCCCC-HHHHHHHHHH
Confidence 468999999999 9999999864
No 482
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=75.98 E-value=0.4 Score=35.04 Aligned_cols=20 Identities=0% Similarity=-0.418 Sum_probs=17.8
Q ss_pred eEEEEecccccceeeeeeecc
Q 028595 6 KLACLFATQVTSFLLYVLSVS 26 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~ 26 (207)
-|++-|.+++| |||+++.+.
T Consensus 8 ~i~~eG~~gsG-KsT~~~~l~ 27 (213)
T 4edh_A 8 FVTLEGPEGAG-KSTNRDYLA 27 (213)
T ss_dssp EEEEECSTTSS-HHHHHHHHH
T ss_pred EEEEEcCCCCC-HHHHHHHHH
Confidence 57889999999 999999875
No 483
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=75.42 E-value=0.31 Score=41.05 Aligned_cols=23 Identities=4% Similarity=-0.161 Sum_probs=19.7
Q ss_pred eeEEEEecccccceeeeeeeccCC
Q 028595 5 AKLACLFATQVTSFLLYVLSVSGR 28 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~~ 28 (207)
..|+++|.+++| ||||++.+.+.
T Consensus 370 ~iI~LiG~sGSG-KSTLar~La~~ 392 (552)
T 3cr8_A 370 FTVFFTGLSGAG-KSTLARALAAR 392 (552)
T ss_dssp EEEEEEESSCHH-HHHHHHHHHHH
T ss_pred eEEEEECCCCCh-HHHHHHHHHHh
Confidence 468999999999 99999998643
No 484
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=75.31 E-value=0.54 Score=38.01 Aligned_cols=22 Identities=0% Similarity=-0.212 Sum_probs=18.9
Q ss_pred eeEEEEecccccceeeeeeeccC
Q 028595 5 AKLACLFATQVTSFLLYVLSVSG 27 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~ 27 (207)
.-|+++|.+++| |||+.++|..
T Consensus 259 ~lIil~G~pGSG-KSTla~~L~~ 280 (416)
T 3zvl_A 259 EVVVAVGFPGAG-KSTFIQEHLV 280 (416)
T ss_dssp CEEEEESCTTSS-HHHHHHHHTG
T ss_pred EEEEEECCCCCC-HHHHHHHHHH
Confidence 457889999999 9999999864
No 485
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=75.26 E-value=0.42 Score=35.50 Aligned_cols=22 Identities=14% Similarity=-0.094 Sum_probs=19.1
Q ss_pred eeEEEEecccccceeeeeeeccC
Q 028595 5 AKLACLFATQVTSFLLYVLSVSG 27 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~~ 27 (207)
.-+++.|.+++| ||+|++.+..
T Consensus 40 ~~vll~G~~GtG-KT~la~~la~ 61 (262)
T 2qz4_A 40 KGALLLGPPGCG-KTLLAKAVAT 61 (262)
T ss_dssp CEEEEESCTTSS-HHHHHHHHHH
T ss_pred ceEEEECCCCCC-HHHHHHHHHH
Confidence 358999999999 9999998864
No 486
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=75.11 E-value=5.5 Score=30.10 Aligned_cols=67 Identities=18% Similarity=0.293 Sum_probs=40.6
Q ss_pred EEEEEEEeCCCCccccccccceecCCcEEEEEEeCCChhhHHHHHHHHHHHHh----hcCCCCcEE-EEeeCCCcc
Q 028595 52 TVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSRASYENVLKKWIPELQ----HYSPGVPVV-LVGTKLDLR 122 (207)
Q Consensus 52 ~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~----~~~~~~pii-vv~nK~D~~ 122 (207)
.+.+.|+|+|+..... ....+..+|.+|++...+. .+...+ ..++..+. ...++.+++ +|.|+.|..
T Consensus 154 ~yD~IiiD~pp~~~~~--~~~~l~~aD~viiv~~~~~-~s~~~~-~~~~~~l~~~~~~~~~~~~~~gvv~n~~~~~ 225 (298)
T 2oze_A 154 DYDLIIIDTVPTPSVY--TNNAIVASDYVMIPLQAEE-ESTNNI-QNYISYLIDLQEQFNPGLDMIGFVPYLVDTD 225 (298)
T ss_dssp GCSEEEEEECSSCSHH--HHHHHHHCSEEEEEECGGG-CCHHHH-HHHHHHHHHHHHHHCTTCEEEEEEEEESCTT
T ss_pred CCCEEEEECCCCccHH--HHHHHHHCCeEEEEecCcH-HHHHHH-HHHHHHHHHHHHHhCCCCeEEEEEEEEECCC
Confidence 3678899998764321 2234446899999987543 344443 33333332 233577754 899999864
No 487
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=75.09 E-value=0.42 Score=37.01 Aligned_cols=85 Identities=14% Similarity=0.094 Sum_probs=46.0
Q ss_pred EEEEEEeCCCCccccc-c----------ccc-eecCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCcEEEEeeCCC
Q 028595 53 VNLGLWDTAGQEDYNR-L----------RPL-SYRGADVFVLAFSLVSRASYENVLKKWIPELQHYSPGVPVVLVGTKLD 120 (207)
Q Consensus 53 ~~l~i~D~~G~~~~~~-~----------~~~-~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piivv~nK~D 120 (207)
+.+.|.||||...... + ... .-...+.+++|.|.+... +.+ .. ...+.+. .++ .-+|.||.|
T Consensus 187 ~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~~--~~l-~~-a~~~~~~-~~i-~gvVlTk~D 260 (306)
T 1vma_A 187 KDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQ--NGL-VQ-AKIFKEA-VNV-TGIILTKLD 260 (306)
T ss_dssp CSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHH--HHH-HH-HHHHHHH-SCC-CEEEEECGG
T ss_pred CCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCCH--HHH-HH-HHHHHhc-CCC-CEEEEeCCC
Confidence 4578999999532211 0 001 112478889999987432 222 11 1223221 122 346679999
Q ss_pred cccCcccccCCCCCcccCHHHHHHHHHHhCCcEEEEec
Q 028595 121 LREDKHYLADHPGLVPVTTAQGEELRKQIGASYYIECS 158 (207)
Q Consensus 121 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~S 158 (207)
... .-..+..++...+. |...++
T Consensus 261 ~~~--------------~gG~~l~~~~~~~~-Pi~~i~ 283 (306)
T 1vma_A 261 GTA--------------KGGITLAIARELGI-PIKFIG 283 (306)
T ss_dssp GCS--------------CTTHHHHHHHHHCC-CEEEEE
T ss_pred Ccc--------------chHHHHHHHHHHCC-CEEEEe
Confidence 632 22347778888887 655543
No 488
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=75.05 E-value=0.42 Score=32.34 Aligned_cols=24 Identities=4% Similarity=-0.352 Sum_probs=20.2
Q ss_pred ceeEEEEecccccceeeeeeeccCC
Q 028595 4 LAKLACLFATQVTSFLLYVLSVSGR 28 (207)
Q Consensus 4 ~~ki~iiG~~~~GgKssli~~l~~~ 28 (207)
...|++.|.+++| ||++.+.+...
T Consensus 24 ~~~vll~G~~GtG-Kt~lA~~i~~~ 47 (145)
T 3n70_A 24 DIAVWLYGAPGTG-RMTGARYLHQF 47 (145)
T ss_dssp CSCEEEESSTTSS-HHHHHHHHHHS
T ss_pred CCCEEEECCCCCC-HHHHHHHHHHh
Confidence 3468999999999 99999988543
No 489
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=74.78 E-value=0.46 Score=38.30 Aligned_cols=20 Identities=0% Similarity=-0.237 Sum_probs=17.5
Q ss_pred eEEEEecccccceeeeeeecc
Q 028595 6 KLACLFATQVTSFLLYVLSVS 26 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~ 26 (207)
-++++|.+++| ||||++.++
T Consensus 180 i~~I~G~sGsG-KTTLl~~la 199 (400)
T 3lda_A 180 ITELFGEFRTG-KSQLCHTLA 199 (400)
T ss_dssp EEEEEESTTSS-HHHHHHHHH
T ss_pred EEEEEcCCCCC-hHHHHHHHH
Confidence 46899999999 999999775
No 490
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=74.58 E-value=0.45 Score=34.49 Aligned_cols=19 Identities=5% Similarity=-0.234 Sum_probs=16.5
Q ss_pred EEEEecccccceeeeeeecc
Q 028595 7 LACLFATQVTSFLLYVLSVS 26 (207)
Q Consensus 7 i~iiG~~~~GgKssli~~l~ 26 (207)
|++=|.+++| |||+++.|.
T Consensus 5 I~~EG~dGsG-KsTq~~~L~ 23 (205)
T 4hlc_A 5 ITFEGPEGSG-KTTVINEVY 23 (205)
T ss_dssp EEEECCTTSC-HHHHHHHHH
T ss_pred EEEECCCCCc-HHHHHHHHH
Confidence 7788999999 999888765
No 491
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=74.35 E-value=0.46 Score=36.77 Aligned_cols=22 Identities=9% Similarity=-0.186 Sum_probs=18.8
Q ss_pred eEEEEecccccceeeeeeeccCC
Q 028595 6 KLACLFATQVTSFLLYVLSVSGR 28 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~~ 28 (207)
-+++.|..++| ||+|++.+...
T Consensus 33 ~v~i~G~~G~G-KT~Ll~~~~~~ 54 (350)
T 2qen_A 33 LTLLLGIRRVG-KSSLLRAFLNE 54 (350)
T ss_dssp EEEEECCTTSS-HHHHHHHHHHH
T ss_pred eEEEECCCcCC-HHHHHHHHHHH
Confidence 47899999999 99999998643
No 492
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=74.03 E-value=0.46 Score=34.30 Aligned_cols=19 Identities=0% Similarity=-0.314 Sum_probs=15.8
Q ss_pred EEEEecccccceeeeeeecc
Q 028595 7 LACLFATQVTSFLLYVLSVS 26 (207)
Q Consensus 7 i~iiG~~~~GgKssli~~l~ 26 (207)
.+++|..++| ||||+..+.
T Consensus 26 ~~I~G~NgsG-KStil~ai~ 44 (203)
T 3qks_A 26 NLIIGQNGSG-KSSLLDAIL 44 (203)
T ss_dssp EEEECCTTSS-HHHHHHHHH
T ss_pred EEEEcCCCCC-HHHHHHHHH
Confidence 4778888888 999999874
No 493
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=73.97 E-value=0.49 Score=36.65 Aligned_cols=21 Identities=5% Similarity=-0.322 Sum_probs=18.3
Q ss_pred eEEEEecccccceeeeeeeccC
Q 028595 6 KLACLFATQVTSFLLYVLSVSG 27 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~ 27 (207)
-+++.|..++| ||+|++.+..
T Consensus 32 ~v~i~G~~G~G-KT~L~~~~~~ 52 (357)
T 2fna_A 32 ITLVLGLRRTG-KSSIIKIGIN 52 (357)
T ss_dssp EEEEEESTTSS-HHHHHHHHHH
T ss_pred cEEEECCCCCC-HHHHHHHHHH
Confidence 47899999999 9999998864
No 494
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=73.89 E-value=0.5 Score=36.14 Aligned_cols=20 Identities=5% Similarity=-0.084 Sum_probs=17.7
Q ss_pred eEEEEecccccceeeeeeecc
Q 028595 6 KLACLFATQVTSFLLYVLSVS 26 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~ 26 (207)
.+++.|.+++| ||++++.+.
T Consensus 69 ~vll~G~~GtG-KT~la~~la 88 (309)
T 3syl_A 69 HMSFTGNPGTG-KTTVALKMA 88 (309)
T ss_dssp EEEEEECTTSS-HHHHHHHHH
T ss_pred eEEEECCCCCC-HHHHHHHHH
Confidence 58999999999 999998654
No 495
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=73.80 E-value=0.51 Score=35.10 Aligned_cols=21 Identities=5% Similarity=-0.301 Sum_probs=18.3
Q ss_pred eeEEEEecccccceeeeeeecc
Q 028595 5 AKLACLFATQVTSFLLYVLSVS 26 (207)
Q Consensus 5 ~ki~iiG~~~~GgKssli~~l~ 26 (207)
.-|++.|.+++| |||+++.+.
T Consensus 28 ~~i~~eG~~GsG-KsT~~~~l~ 48 (236)
T 3lv8_A 28 KFIVIEGLEGAG-KSTAIQVVV 48 (236)
T ss_dssp CEEEEEESTTSC-HHHHHHHHH
T ss_pred eEEEEECCCCCC-HHHHHHHHH
Confidence 358899999999 999999875
No 496
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=73.78 E-value=0.5 Score=36.20 Aligned_cols=21 Identities=10% Similarity=-0.282 Sum_probs=17.6
Q ss_pred eEEEEecccccceeeeeeeccC
Q 028595 6 KLACLFATQVTSFLLYVLSVSG 27 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~ 27 (207)
-+++.|.+++| ||+|++.+..
T Consensus 38 ~lLl~GppGtG-KT~la~aiA~ 58 (293)
T 3t15_A 38 ILGIWGGKGQG-KSFQCELVFR 58 (293)
T ss_dssp EEEEEECTTSC-HHHHHHHHHH
T ss_pred EEEEECCCCCC-HHHHHHHHHH
Confidence 46677999999 9999998864
No 497
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=73.77 E-value=0.49 Score=37.31 Aligned_cols=22 Identities=5% Similarity=-0.189 Sum_probs=19.2
Q ss_pred eEEEEecccccceeeeeeeccCC
Q 028595 6 KLACLFATQVTSFLLYVLSVSGR 28 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~~ 28 (207)
-+++.|.+++| ||+|++.+.+.
T Consensus 46 ~~li~G~~G~G-KTtl~~~l~~~ 67 (389)
T 1fnn_A 46 RATLLGRPGTG-KTVTLRKLWEL 67 (389)
T ss_dssp EEEEECCTTSS-HHHHHHHHHHH
T ss_pred eEEEECCCCCC-HHHHHHHHHHH
Confidence 58999999999 99999988643
No 498
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=73.72 E-value=0.46 Score=34.69 Aligned_cols=21 Identities=10% Similarity=-0.115 Sum_probs=17.9
Q ss_pred eEEEEecccccceeeeeeeccC
Q 028595 6 KLACLFATQVTSFLLYVLSVSG 27 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l~~ 27 (207)
.+++.|++++| ||+++.++.+
T Consensus 60 ~ili~GPPGtG-KTt~a~ala~ 80 (212)
T 1tue_A 60 CLVFCGPANTG-KSYFGMSFIH 80 (212)
T ss_dssp EEEEESCGGGC-HHHHHHHHHH
T ss_pred EEEEECCCCCC-HHHHHHHHHH
Confidence 58999999999 9988877753
No 499
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=73.59 E-value=0.52 Score=39.33 Aligned_cols=19 Identities=5% Similarity=-0.052 Sum_probs=17.1
Q ss_pred eEEEEecccccceeeeeeec
Q 028595 6 KLACLFATQVTSFLLYVLSV 25 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l 25 (207)
-++++|.+++| ||||++.|
T Consensus 41 ~~~l~G~nGsG-KSTL~~~~ 59 (525)
T 1tf7_A 41 STLVSGTSGTG-KTLFSIQF 59 (525)
T ss_dssp EEEEEESTTSS-HHHHHHHH
T ss_pred EEEEEcCCCCC-HHHHHHHH
Confidence 47899999999 99999995
No 500
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=73.44 E-value=0.39 Score=38.57 Aligned_cols=19 Identities=16% Similarity=-0.176 Sum_probs=17.2
Q ss_pred eEEEEecccccceeeeeeec
Q 028595 6 KLACLFATQVTSFLLYVLSV 25 (207)
Q Consensus 6 ki~iiG~~~~GgKssli~~l 25 (207)
.++++|..++| ||||++.+
T Consensus 62 ~~~lvG~NGaG-KStLl~aI 80 (415)
T 4aby_A 62 FCAFTGETGAG-KSIIVDAL 80 (415)
T ss_dssp EEEEEESHHHH-HHHHTHHH
T ss_pred cEEEECCCCCC-HHHHHHHH
Confidence 67999999999 99999776
Done!