Query 028596
Match_columns 207
No_of_seqs 73 out of 75
Neff 3.2
Searched_HMMs 46136
Date Fri Mar 29 14:00:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028596.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028596hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF12718 Tropomyosin_1: Tropom 96.8 0.038 8.3E-07 45.1 12.2 92 35-126 6-103 (143)
2 PRK11637 AmiB activator; Provi 96.7 0.032 6.9E-07 51.5 12.5 108 11-127 17-134 (428)
3 PF08614 ATG16: Autophagy prot 96.7 0.031 6.7E-07 46.8 11.4 82 41-122 93-177 (194)
4 PRK10884 SH3 domain-containing 96.5 0.046 9.9E-07 47.4 11.5 69 40-115 90-158 (206)
5 PRK11637 AmiB activator; Provi 96.4 0.08 1.7E-06 48.9 13.1 68 43-114 68-135 (428)
6 PF12329 TMF_DNA_bd: TATA elem 96.4 0.056 1.2E-06 39.9 9.5 65 54-118 2-69 (74)
7 COG2433 Uncharacterized conser 96.3 0.073 1.6E-06 53.3 12.5 82 40-121 426-513 (652)
8 PF08614 ATG16: Autophagy prot 96.2 0.062 1.3E-06 45.0 10.2 72 40-115 120-192 (194)
9 PF06637 PV-1: PV-1 protein (P 96.2 0.12 2.6E-06 49.6 13.1 68 49-116 284-376 (442)
10 PF10473 CENP-F_leu_zip: Leuci 96.0 0.51 1.1E-05 39.1 14.3 84 40-127 21-111 (140)
11 PF11559 ADIP: Afadin- and alp 95.9 0.19 4E-06 40.2 11.4 30 52-81 75-104 (151)
12 PRK09039 hypothetical protein; 95.9 0.16 3.6E-06 46.5 12.4 88 40-127 113-204 (343)
13 COG1579 Zn-ribbon protein, pos 95.4 0.32 6.9E-06 43.5 11.8 21 40-60 56-76 (239)
14 COG1579 Zn-ribbon protein, pos 95.2 0.68 1.5E-05 41.4 13.3 71 45-115 33-115 (239)
15 PHA02562 46 endonuclease subun 95.2 0.46 1E-05 44.3 12.7 96 19-114 142-245 (562)
16 PF11559 ADIP: Afadin- and alp 95.2 0.46 1E-05 38.0 11.0 71 46-120 55-125 (151)
17 PF10186 Atg14: UV radiation r 95.1 0.8 1.7E-05 38.8 12.9 85 42-126 62-153 (302)
18 PRK03918 chromosome segregatio 95.0 1 2.3E-05 44.3 15.2 94 21-114 154-263 (880)
19 PF04156 IncA: IncA protein; 94.8 1.1 2.4E-05 36.6 12.6 82 40-121 85-169 (191)
20 PF05700 BCAS2: Breast carcino 94.8 1.9 4.2E-05 37.1 14.4 89 30-118 123-211 (221)
21 PF03148 Tektin: Tektin family 94.7 1.7 3.6E-05 40.4 14.9 97 29-125 237-353 (384)
22 PF09755 DUF2046: Uncharacteri 94.7 0.94 2E-05 42.2 13.1 87 39-129 109-204 (310)
23 PRK02224 chromosome segregatio 94.4 1.5 3.2E-05 43.6 14.6 13 25-37 147-159 (880)
24 PF04012 PspA_IM30: PspA/IM30 94.4 2 4.3E-05 36.1 13.4 101 24-127 22-129 (221)
25 PF12718 Tropomyosin_1: Tropom 94.3 1.2 2.5E-05 36.5 11.5 77 40-116 39-128 (143)
26 TIGR03185 DNA_S_dndD DNA sulfu 94.2 1.3 2.8E-05 43.3 13.5 43 39-81 394-438 (650)
27 PHA02562 46 endonuclease subun 94.2 0.74 1.6E-05 42.9 11.4 38 42-79 336-373 (562)
28 PF08647 BRE1: BRE1 E3 ubiquit 94.0 2.1 4.6E-05 32.7 11.9 79 45-127 5-90 (96)
29 KOG3990 Uncharacterized conser 93.9 0.27 5.7E-06 45.3 7.7 34 45-78 227-260 (305)
30 PF09789 DUF2353: Uncharacteri 93.8 0.78 1.7E-05 42.7 10.8 72 40-115 90-180 (319)
31 PRK10884 SH3 domain-containing 93.8 1 2.2E-05 39.1 10.9 66 40-112 97-162 (206)
32 KOG0288 WD40 repeat protein Ti 93.7 0.99 2.1E-05 43.9 11.5 71 54-128 31-101 (459)
33 TIGR02169 SMC_prok_A chromosom 93.7 1.5 3.2E-05 43.8 13.0 22 92-113 899-920 (1164)
34 PF04111 APG6: Autophagy prote 93.7 1.4 3E-05 40.2 11.9 77 40-116 47-133 (314)
35 PF14197 Cep57_CLD_2: Centroso 93.7 1.3 2.7E-05 32.7 9.6 60 47-106 2-64 (69)
36 PF13851 GAS: Growth-arrest sp 93.6 4.2 9.1E-05 34.9 14.2 77 40-116 45-127 (201)
37 PF09726 Macoilin: Transmembra 93.5 0.92 2E-05 45.8 11.4 40 37-76 539-578 (697)
38 KOG0977 Nuclear envelope prote 93.4 1.7 3.7E-05 43.1 12.9 84 30-113 94-193 (546)
39 PF00261 Tropomyosin: Tropomyo 93.4 1.6 3.6E-05 37.6 11.4 53 29-81 100-158 (237)
40 PF04156 IncA: IncA protein; 93.4 2.7 5.9E-05 34.3 12.1 41 41-81 100-140 (191)
41 PF13870 DUF4201: Domain of un 93.3 3.9 8.4E-05 33.6 13.4 50 25-78 42-91 (177)
42 PF15619 Lebercilin: Ciliary p 93.0 1.1 2.3E-05 38.6 9.6 61 46-106 121-188 (194)
43 PF08317 Spc7: Spc7 kinetochor 92.9 2.7 5.8E-05 38.0 12.5 24 102-125 236-259 (325)
44 PF11180 DUF2968: Protein of u 92.9 2.2 4.8E-05 37.4 11.5 75 43-117 105-182 (192)
45 COG4026 Uncharacterized protei 92.8 2.9 6.3E-05 38.3 12.4 84 29-116 104-197 (290)
46 PF08172 CASP_C: CASP C termin 92.7 1.4 3E-05 39.3 10.3 84 46-129 2-139 (248)
47 PF04899 MbeD_MobD: MbeD/MobD 92.6 2.4 5.1E-05 31.6 9.7 35 82-116 35-69 (70)
48 PF12325 TMF_TATA_bd: TATA ele 92.6 3.1 6.8E-05 33.6 11.2 20 105-124 98-117 (120)
49 KOG2685 Cystoskeletal protein 92.6 6.1 0.00013 38.4 14.9 97 28-124 263-379 (421)
50 PF07106 TBPIP: Tat binding pr 92.4 0.86 1.9E-05 37.2 7.9 33 48-80 77-109 (169)
51 PF07888 CALCOCO1: Calcium bin 92.3 5.8 0.00013 39.5 14.8 90 17-106 130-237 (546)
52 PRK02224 chromosome segregatio 92.3 3.4 7.4E-05 41.1 13.4 12 25-36 162-173 (880)
53 TIGR03017 EpsF chain length de 92.3 2 4.4E-05 39.1 10.9 90 40-129 258-368 (444)
54 smart00787 Spc7 Spc7 kinetocho 92.2 3 6.4E-05 38.3 11.9 30 52-81 206-235 (312)
55 KOG0161 Myosin class II heavy 92.1 2.3 5E-05 47.7 12.9 90 38-127 1317-1417(1930)
56 PF00038 Filament: Intermediat 92.1 7.7 0.00017 33.9 14.6 72 51-122 217-295 (312)
57 COG4942 Membrane-bound metallo 92.0 2.1 4.5E-05 41.4 11.0 66 43-108 38-106 (420)
58 KOG0994 Extracellular matrix g 91.7 1 2.3E-05 48.8 9.4 77 40-116 1198-1294(1758)
59 PF05266 DUF724: Protein of un 91.5 5.2 0.00011 34.4 12.0 99 14-116 55-179 (190)
60 TIGR03752 conj_TIGR03752 integ 91.4 2.2 4.7E-05 41.8 10.6 70 41-110 64-137 (472)
61 KOG3433 Protein involved in me 91.4 1.8 3.9E-05 38.2 9.1 74 40-124 78-151 (203)
62 PF15070 GOLGA2L5: Putative go 91.4 7.3 0.00016 39.0 14.5 41 41-81 27-67 (617)
63 PF08317 Spc7: Spc7 kinetochor 91.3 7 0.00015 35.4 13.2 42 40-81 181-226 (325)
64 KOG4010 Coiled-coil protein TP 91.2 0.39 8.5E-06 42.4 4.9 34 40-73 48-81 (208)
65 TIGR03185 DNA_S_dndD DNA sulfu 91.1 7.7 0.00017 38.0 14.2 68 14-81 171-247 (650)
66 TIGR01843 type_I_hlyD type I s 91.0 11 0.00023 33.5 14.0 41 40-80 141-181 (423)
67 PF05911 DUF869: Plant protein 91.0 3.6 7.8E-05 42.3 12.2 58 35-93 10-70 (769)
68 smart00787 Spc7 Spc7 kinetocho 91.0 5.8 0.00013 36.4 12.4 77 40-127 176-256 (312)
69 PF10186 Atg14: UV radiation r 90.9 9 0.0002 32.5 14.2 85 40-124 67-154 (302)
70 PF03962 Mnd1: Mnd1 family; I 90.9 5 0.00011 34.1 11.3 30 47-76 66-95 (188)
71 PF13851 GAS: Growth-arrest sp 90.9 6 0.00013 34.0 11.8 85 40-124 59-149 (201)
72 KOG2129 Uncharacterized conser 90.8 11 0.00024 37.3 14.7 85 37-124 202-317 (552)
73 KOG0994 Extracellular matrix g 90.7 8 0.00017 42.4 14.6 111 14-124 1497-1637(1758)
74 PF10146 zf-C4H2: Zinc finger- 90.7 4.4 9.4E-05 35.9 11.1 42 92-133 70-112 (230)
75 PF10224 DUF2205: Predicted co 90.7 1.5 3.2E-05 33.5 7.0 43 69-111 21-66 (80)
76 TIGR03007 pepcterm_ChnLen poly 90.7 3.3 7.2E-05 38.5 10.8 41 40-80 251-291 (498)
77 PF14362 DUF4407: Domain of un 90.6 11 0.00025 33.1 14.2 83 48-130 133-238 (301)
78 PF11932 DUF3450: Protein of u 90.5 11 0.00023 32.7 13.9 40 42-81 41-80 (251)
79 KOG0804 Cytoplasmic Zn-finger 90.5 6.3 0.00014 38.9 12.8 84 28-115 328-429 (493)
80 PF12777 MT: Microtubule-bindi 90.3 2.1 4.5E-05 38.9 9.0 59 41-103 219-277 (344)
81 PF09726 Macoilin: Transmembra 90.3 1.7 3.6E-05 44.0 9.1 84 47-130 422-515 (697)
82 TIGR00606 rad50 rad50. This fa 90.2 3.9 8.5E-05 43.3 11.9 76 40-115 1002-1087(1311)
83 KOG0995 Centromere-associated 90.0 5.7 0.00012 39.9 12.3 42 40-81 284-325 (581)
84 PF07888 CALCOCO1: Calcium bin 90.0 6.6 0.00014 39.2 12.7 83 42-124 142-234 (546)
85 PF00769 ERM: Ezrin/radixin/mo 90.0 6.1 0.00013 34.8 11.3 78 40-117 9-96 (246)
86 PF10168 Nup88: Nuclear pore c 89.9 6.1 0.00013 40.1 12.7 63 40-106 562-624 (717)
87 PF15070 GOLGA2L5: Putative go 89.9 5.4 0.00012 39.9 12.1 86 40-129 47-151 (617)
88 KOG0161 Myosin class II heavy 89.9 4.8 0.0001 45.3 12.7 89 28-116 1696-1792(1930)
89 PF06005 DUF904: Protein of un 89.8 6.6 0.00014 29.2 9.8 23 86-108 43-65 (72)
90 TIGR01005 eps_transp_fam exopo 89.8 3.3 7.1E-05 40.8 10.4 29 102-130 375-403 (754)
91 PF12325 TMF_TATA_bd: TATA ele 89.8 9.4 0.0002 30.8 12.9 72 53-128 19-93 (120)
92 PF13870 DUF4201: Domain of un 89.7 10 0.00022 31.2 12.0 79 46-124 45-126 (177)
93 PF14197 Cep57_CLD_2: Centroso 89.7 3.2 7E-05 30.5 7.9 50 63-116 4-53 (69)
94 COG5185 HEC1 Protein involved 89.6 8.5 0.00018 38.6 13.0 72 41-112 321-398 (622)
95 TIGR02231 conserved hypothetic 89.6 4.5 9.8E-05 38.4 10.9 80 40-119 68-168 (525)
96 PF09730 BicD: Microtubule-ass 89.6 5.7 0.00012 40.7 12.1 82 40-121 31-129 (717)
97 TIGR00606 rad50 rad50. This fa 89.2 9 0.00019 40.7 13.7 77 30-106 874-951 (1311)
98 COG1196 Smc Chromosome segrega 89.2 11 0.00023 39.7 14.1 40 85-124 442-481 (1163)
99 KOG0250 DNA repair protein RAD 89.1 5.1 0.00011 42.8 11.7 35 92-126 390-424 (1074)
100 COG1196 Smc Chromosome segrega 89.0 7.6 0.00017 40.8 13.0 23 93-115 888-910 (1163)
101 PRK09039 hypothetical protein; 89.0 4.9 0.00011 37.0 10.4 12 70-81 115-126 (343)
102 PF09798 LCD1: DNA damage chec 88.9 2.2 4.7E-05 43.2 8.6 56 55-110 2-61 (654)
103 KOG0963 Transcription factor/C 88.8 6.7 0.00015 39.8 11.8 74 43-116 249-330 (629)
104 COG4026 Uncharacterized protei 88.5 4.2 9.2E-05 37.3 9.4 76 40-119 139-214 (290)
105 KOG1962 B-cell receptor-associ 88.5 2.7 5.9E-05 37.3 8.0 61 51-115 135-198 (216)
106 KOG0995 Centromere-associated 88.5 17 0.00036 36.7 14.2 92 40-131 256-367 (581)
107 PF10805 DUF2730: Protein of u 88.4 2.6 5.6E-05 32.8 7.1 21 92-112 75-95 (106)
108 PF14662 CCDC155: Coiled-coil 88.4 7.6 0.00016 34.2 10.6 64 46-109 63-129 (193)
109 PF10205 KLRAQ: Predicted coil 88.3 10 0.00022 30.4 10.4 65 48-113 3-71 (102)
110 PF10205 KLRAQ: Predicted coil 88.2 8.7 0.00019 30.7 10.0 25 54-78 30-54 (102)
111 PF00038 Filament: Intermediat 88.1 13 0.00029 32.4 12.0 20 41-60 16-35 (312)
112 PF10174 Cast: RIM-binding pro 88.0 9.7 0.00021 39.3 12.6 72 40-111 333-414 (775)
113 PF14817 HAUS5: HAUS augmin-li 88.0 10 0.00022 38.3 12.6 77 44-120 80-166 (632)
114 PF11544 Spc42p: Spindle pole 87.9 8.2 0.00018 29.6 9.2 52 48-103 3-54 (76)
115 PF11932 DUF3450: Protein of u 87.8 17 0.00038 31.4 13.7 52 29-81 22-73 (251)
116 TIGR03017 EpsF chain length de 87.7 13 0.00027 34.0 12.1 16 45-60 284-299 (444)
117 PF10146 zf-C4H2: Zinc finger- 87.7 19 0.00042 31.9 15.8 52 60-115 46-100 (230)
118 PF15619 Lebercilin: Ciliary p 87.7 9.8 0.00021 32.8 10.8 78 39-116 57-145 (194)
119 PF15290 Syntaphilin: Golgi-lo 87.4 13 0.00028 34.8 11.9 100 26-130 62-180 (305)
120 PF05377 FlaC_arch: Flagella a 87.4 2.9 6.3E-05 30.2 6.2 38 66-107 2-39 (55)
121 KOG4674 Uncharacterized conser 87.2 5 0.00011 44.9 10.7 56 46-101 1310-1365(1822)
122 PF04201 TPD52: Tumour protein 87.2 11 0.00024 32.3 10.7 43 39-81 32-79 (162)
123 KOG0249 LAR-interacting protei 87.2 11 0.00023 39.5 12.3 73 52-124 165-251 (916)
124 PF09744 Jnk-SapK_ap_N: JNK_SA 87.0 17 0.00037 30.6 12.2 78 40-117 47-124 (158)
125 COG4942 Membrane-bound metallo 86.9 12 0.00026 36.3 11.9 69 50-122 38-106 (420)
126 PRK02119 hypothetical protein; 86.9 4.8 0.0001 29.8 7.4 30 100-129 27-56 (73)
127 TIGR03007 pepcterm_ChnLen poly 86.9 11 0.00024 35.1 11.5 87 43-129 275-381 (498)
128 TIGR01005 eps_transp_fam exopo 86.7 8.5 0.00019 38.0 11.1 17 44-60 317-333 (754)
129 PF10174 Cast: RIM-binding pro 86.7 8.1 0.00018 39.9 11.3 64 33-103 277-350 (775)
130 PF02050 FliJ: Flagellar FliJ 86.6 9.7 0.00021 27.3 13.0 81 40-124 16-101 (123)
131 PF10473 CENP-F_leu_zip: Leuci 86.6 14 0.00031 30.7 10.8 70 41-113 64-136 (140)
132 PF06810 Phage_GP20: Phage min 86.6 9.5 0.00021 31.6 9.8 32 40-71 17-48 (155)
133 PF13863 DUF4200: Domain of un 86.5 13 0.00027 28.5 13.5 55 68-122 43-100 (126)
134 PF05529 Bap31: B-cell recepto 86.5 3.2 6.9E-05 34.5 7.0 68 40-111 122-190 (192)
135 PF11068 YlqD: YlqD protein; 86.4 9.3 0.0002 31.3 9.5 63 62-128 18-85 (131)
136 TIGR03319 YmdA_YtgF conserved 86.4 27 0.00059 34.1 14.2 12 118-129 149-160 (514)
137 PRK12704 phosphodiesterase; Pr 86.4 27 0.00059 34.1 14.2 12 118-129 155-166 (520)
138 PF10779 XhlA: Haemolysin XhlA 86.4 4.4 9.6E-05 29.3 6.8 46 68-117 3-48 (71)
139 PF06005 DUF904: Protein of un 86.1 12 0.00026 27.8 9.8 25 89-113 32-56 (72)
140 PF00170 bZIP_1: bZIP transcri 86.1 5.3 0.00011 27.9 6.9 21 61-81 23-43 (64)
141 PF10805 DUF2730: Protein of u 86.1 8.3 0.00018 30.0 8.7 35 88-122 64-98 (106)
142 PF08826 DMPK_coil: DMPK coile 85.9 11 0.00024 27.4 9.2 56 46-109 4-59 (61)
143 PF05911 DUF869: Plant protein 85.7 7 0.00015 40.3 10.2 61 41-101 97-160 (769)
144 PF05667 DUF812: Protein of un 85.7 11 0.00023 37.7 11.2 41 41-81 340-380 (594)
145 PF04102 SlyX: SlyX; InterPro 85.6 6.4 0.00014 28.5 7.4 31 100-130 22-52 (69)
146 KOG4398 Predicted coiled-coil 85.6 5.9 0.00013 37.3 8.9 82 41-126 3-88 (359)
147 TIGR02680 conserved hypothetic 85.5 9.7 0.00021 41.0 11.5 42 40-81 739-780 (1353)
148 KOG0962 DNA repair protein RAD 85.4 10 0.00022 41.4 11.6 80 39-124 1011-1096(1294)
149 KOG2991 Splicing regulator [RN 85.4 5.4 0.00012 37.2 8.5 71 36-106 229-309 (330)
150 PRK13729 conjugal transfer pil 85.3 4 8.7E-05 40.0 8.0 11 180-190 194-204 (475)
151 PRK04406 hypothetical protein; 85.3 7.3 0.00016 29.0 7.7 52 66-128 6-57 (75)
152 PF11594 Med28: Mediator compl 85.3 7.4 0.00016 31.4 8.2 52 30-81 14-73 (106)
153 PF12329 TMF_DNA_bd: TATA elem 85.3 6.8 0.00015 28.9 7.5 36 84-119 14-49 (74)
154 PF09787 Golgin_A5: Golgin sub 85.1 3.7 8E-05 39.5 7.6 72 37-112 356-429 (511)
155 PF04111 APG6: Autophagy prote 85.1 26 0.00056 32.0 12.6 40 42-81 42-81 (314)
156 PF05278 PEARLI-4: Arabidopsis 85.1 13 0.00029 34.1 10.7 65 50-114 193-260 (269)
157 TIGR00634 recN DNA repair prot 85.0 7.6 0.00017 37.5 9.7 45 84-128 341-390 (563)
158 TIGR01000 bacteriocin_acc bact 84.9 11 0.00024 35.2 10.5 66 44-112 237-314 (457)
159 PF06156 DUF972: Protein of un 84.9 8.8 0.00019 30.4 8.4 26 85-110 32-57 (107)
160 KOG4687 Uncharacterized coiled 84.9 4.5 9.8E-05 38.2 7.8 52 65-116 10-64 (389)
161 PF10211 Ax_dynein_light: Axon 84.8 9.7 0.00021 32.4 9.2 25 94-118 161-185 (189)
162 COG3883 Uncharacterized protei 84.8 9.3 0.0002 34.9 9.6 22 92-113 69-90 (265)
163 PRK02793 phi X174 lysis protei 84.7 7.2 0.00016 28.7 7.4 28 101-128 27-54 (72)
164 KOG0288 WD40 repeat protein Ti 84.5 20 0.00043 35.3 12.1 36 46-81 37-72 (459)
165 PF15035 Rootletin: Ciliary ro 84.5 9.1 0.0002 32.7 8.9 20 95-114 94-113 (182)
166 KOG4643 Uncharacterized coiled 84.5 8.1 0.00018 41.5 10.2 68 38-109 172-239 (1195)
167 TIGR00634 recN DNA repair prot 84.4 4 8.6E-05 39.4 7.5 57 25-81 142-199 (563)
168 KOG4673 Transcription factor T 84.3 11 0.00023 39.4 10.7 38 44-81 496-533 (961)
169 PF10168 Nup88: Nuclear pore c 84.2 11 0.00024 38.4 10.7 55 53-107 546-604 (717)
170 KOG0980 Actin-binding protein 84.0 31 0.00067 36.8 13.9 42 83-124 453-505 (980)
171 COG2433 Uncharacterized conser 84.0 20 0.00043 36.7 12.2 71 41-112 420-490 (652)
172 PF03962 Mnd1: Mnd1 family; I 83.8 9.3 0.0002 32.5 8.7 30 40-69 66-95 (188)
173 PF07926 TPR_MLP1_2: TPR/MLP1/ 83.8 20 0.00043 28.5 10.2 30 52-81 61-90 (132)
174 PRK10803 tol-pal system protei 83.7 10 0.00023 33.5 9.3 63 49-115 39-101 (263)
175 PF06818 Fez1: Fez1; InterPro 83.4 12 0.00025 33.1 9.3 68 50-117 31-101 (202)
176 COG3883 Uncharacterized protei 83.2 16 0.00034 33.5 10.3 22 86-107 77-98 (265)
177 PF13747 DUF4164: Domain of un 83.1 17 0.00037 27.7 9.1 26 82-107 53-78 (89)
178 TIGR01000 bacteriocin_acc bact 83.1 38 0.00082 31.7 13.1 39 40-78 162-200 (457)
179 PF04102 SlyX: SlyX; InterPro 83.0 8.9 0.00019 27.7 7.2 27 86-112 22-48 (69)
180 PF04100 Vps53_N: Vps53-like, 83.0 16 0.00035 34.2 10.7 42 10-55 2-44 (383)
181 PF04849 HAP1_N: HAP1 N-termin 83.0 31 0.00068 32.2 12.3 86 30-115 154-253 (306)
182 TIGR01010 BexC_CtrB_KpsE polys 82.9 12 0.00025 33.8 9.4 80 43-129 214-304 (362)
183 PF02994 Transposase_22: L1 tr 82.9 3.1 6.7E-05 38.7 5.9 30 41-70 103-132 (370)
184 TIGR02559 HrpB7 type III secre 82.9 24 0.00052 30.3 10.7 64 37-100 80-149 (158)
185 KOG0971 Microtubule-associated 82.8 47 0.001 36.0 14.7 85 44-128 956-1051(1243)
186 PRK10361 DNA recombination pro 82.8 27 0.00059 34.3 12.4 74 53-126 70-160 (475)
187 COG1322 Predicted nuclease of 82.8 42 0.0009 32.7 13.6 15 115-129 141-155 (448)
188 TIGR01843 type_I_hlyD type I s 82.7 34 0.00074 30.3 15.5 42 40-81 134-175 (423)
189 PRK00846 hypothetical protein; 82.6 9.5 0.0002 29.0 7.4 30 101-130 32-61 (77)
190 PF04977 DivIC: Septum formati 82.6 8.7 0.00019 26.8 6.8 35 86-120 28-62 (80)
191 PRK01156 chromosome segregatio 82.6 28 0.00061 35.0 12.8 10 94-103 700-709 (895)
192 PF09486 HrpB7: Bacterial type 82.5 12 0.00027 31.6 8.8 54 39-92 82-141 (158)
193 KOG1899 LAR transmembrane tyro 82.4 17 0.00038 37.6 11.2 85 40-124 228-319 (861)
194 PRK00106 hypothetical protein; 82.3 51 0.0011 32.8 14.2 12 118-129 170-181 (535)
195 PF07106 TBPIP: Tat binding pr 82.2 10 0.00022 30.9 8.1 42 40-81 90-133 (169)
196 PRK01156 chromosome segregatio 82.2 24 0.00051 35.6 12.1 18 106-123 729-746 (895)
197 PF08647 BRE1: BRE1 E3 ubiquit 82.1 20 0.00044 27.3 9.8 36 46-81 27-62 (96)
198 PRK04863 mukB cell division pr 82.1 23 0.00049 39.1 12.7 21 40-60 318-338 (1486)
199 PF14932 HAUS-augmin3: HAUS au 82.1 31 0.00067 30.4 11.5 39 43-81 68-106 (256)
200 PRK10803 tol-pal system protei 82.0 7.8 0.00017 34.3 7.9 61 40-100 37-100 (263)
201 PRK04778 septation ring format 82.0 27 0.00058 34.1 12.1 90 40-129 253-374 (569)
202 TIGR03495 phage_LysB phage lys 81.9 15 0.00032 30.5 8.9 30 51-80 20-49 (135)
203 PF10234 Cluap1: Clusterin-ass 81.6 33 0.00071 31.4 11.8 67 49-115 143-209 (267)
204 KOG0996 Structural maintenance 81.4 17 0.00037 39.6 11.2 81 21-101 772-877 (1293)
205 PRK00295 hypothetical protein; 81.4 15 0.00032 26.8 7.8 27 102-128 25-51 (68)
206 PF05278 PEARLI-4: Arabidopsis 81.2 29 0.00064 31.9 11.3 64 42-109 199-262 (269)
207 KOG0971 Microtubule-associated 80.9 8.2 0.00018 41.3 8.6 32 43-74 410-441 (1243)
208 PF09304 Cortex-I_coil: Cortex 80.8 14 0.00031 29.9 8.2 44 38-81 11-54 (107)
209 KOG3119 Basic region leucine z 80.7 8.8 0.00019 34.3 7.8 77 52-128 181-261 (269)
210 PF02601 Exonuc_VII_L: Exonucl 80.7 40 0.00087 29.8 13.1 54 28-81 150-208 (319)
211 smart00338 BRLZ basic region l 80.6 17 0.00036 25.4 7.7 26 91-116 35-60 (65)
212 PRK04863 mukB cell division pr 80.4 30 0.00064 38.3 12.8 73 48-120 353-428 (1486)
213 PRK12705 hypothetical protein; 80.4 31 0.00068 34.0 12.0 14 118-131 143-156 (508)
214 PRK00888 ftsB cell division pr 80.3 9.8 0.00021 29.7 7.0 41 86-126 38-78 (105)
215 KOG4005 Transcription factor X 80.1 27 0.00059 32.4 10.7 81 42-126 58-145 (292)
216 KOG0244 Kinesin-like protein [ 79.9 12 0.00025 39.6 9.3 92 40-132 513-608 (913)
217 PF04977 DivIC: Septum formati 79.9 11 0.00024 26.2 6.6 30 45-74 19-48 (80)
218 PF06476 DUF1090: Protein of u 79.8 17 0.00036 29.1 8.3 70 29-101 32-112 (115)
219 PF05384 DegS: Sensor protein 79.8 32 0.00068 29.1 10.4 80 40-120 45-129 (159)
220 KOG0250 DNA repair protein RAD 79.7 28 0.00061 37.5 12.1 69 40-108 348-420 (1074)
221 PF06698 DUF1192: Protein of u 79.6 3 6.5E-05 30.3 3.7 28 40-67 25-52 (59)
222 PRK13169 DNA replication intia 79.5 17 0.00038 29.1 8.3 23 86-108 33-55 (110)
223 PF02841 GBP_C: Guanylate-bind 79.3 31 0.00066 30.7 10.7 72 47-121 187-258 (297)
224 PF05622 HOOK: HOOK protein; 79.2 0.61 1.3E-05 46.2 0.0 20 42-61 307-326 (713)
225 KOG4552 Vitamin-D-receptor int 79.2 12 0.00026 34.1 8.1 38 44-81 68-105 (272)
226 TIGR02132 phaR_Bmeg polyhydrox 79.2 26 0.00055 31.0 9.8 56 40-95 76-144 (189)
227 PRK04778 septation ring format 79.1 25 0.00053 34.3 10.8 25 86-110 387-411 (569)
228 PF10046 BLOC1_2: Biogenesis o 79.0 26 0.00057 26.8 9.9 62 40-116 32-93 (99)
229 KOG0996 Structural maintenance 79.0 9.9 0.00021 41.3 8.6 33 82-114 907-939 (1293)
230 KOG0933 Structural maintenance 79.0 18 0.00038 39.1 10.3 39 84-122 887-925 (1174)
231 PF05529 Bap31: B-cell recepto 78.9 25 0.00054 29.2 9.4 68 41-121 116-183 (192)
232 PF14282 FlxA: FlxA-like prote 78.3 14 0.00031 28.7 7.4 57 63-120 18-75 (106)
233 PRK00736 hypothetical protein; 78.1 19 0.00041 26.2 7.5 28 101-128 24-51 (68)
234 PRK12704 phosphodiesterase; Pr 78.0 73 0.0016 31.3 14.2 35 93-127 111-145 (520)
235 KOG0999 Microtubule-associated 77.9 18 0.00038 37.1 9.5 37 40-76 104-140 (772)
236 PRK00286 xseA exodeoxyribonucl 77.8 60 0.0013 30.2 13.0 53 29-81 268-322 (438)
237 PF09789 DUF2353: Uncharacteri 77.7 16 0.00035 34.2 8.7 74 40-113 76-150 (319)
238 smart00338 BRLZ basic region l 77.7 13 0.00028 25.9 6.4 39 61-103 23-61 (65)
239 KOG4674 Uncharacterized conser 77.7 24 0.00052 39.9 11.2 73 40-115 802-877 (1822)
240 KOG1962 B-cell receptor-associ 77.6 23 0.00051 31.5 9.4 56 46-105 154-209 (216)
241 PRK02793 phi X174 lysis protei 77.5 14 0.0003 27.2 6.7 26 86-111 26-51 (72)
242 PF13874 Nup54: Nucleoporin co 77.5 18 0.0004 29.1 8.0 31 40-70 34-64 (141)
243 PRK10869 recombination and rep 77.4 13 0.00029 36.2 8.5 58 24-81 137-195 (553)
244 PF12240 Angiomotin_C: Angiomo 77.2 3.5 7.6E-05 36.5 4.1 31 42-72 135-165 (205)
245 PF04582 Reo_sigmaC: Reovirus 77.1 6 0.00013 37.1 5.8 89 40-128 53-151 (326)
246 PF10234 Cluap1: Clusterin-ass 77.1 35 0.00075 31.2 10.5 22 40-61 166-187 (267)
247 PF05377 FlaC_arch: Flagella a 77.1 9.3 0.0002 27.6 5.5 37 44-80 1-37 (55)
248 PRK04325 hypothetical protein; 77.1 17 0.00037 26.9 7.1 29 100-128 27-55 (74)
249 PF04899 MbeD_MobD: MbeD/MobD 76.9 28 0.00061 25.9 8.3 53 29-81 7-59 (70)
250 PF09728 Taxilin: Myosin-like 76.8 61 0.0013 29.7 12.9 79 44-122 203-305 (309)
251 PF01576 Myosin_tail_1: Myosin 76.7 0.8 1.7E-05 46.8 0.0 89 39-127 260-359 (859)
252 PF06246 Isy1: Isy1-like splic 76.7 13 0.00028 33.6 7.6 58 52-109 39-98 (255)
253 PF12240 Angiomotin_C: Angiomo 76.4 56 0.0012 29.1 13.5 81 52-132 59-172 (205)
254 KOG4643 Uncharacterized coiled 76.3 33 0.00071 37.2 11.3 77 45-121 504-593 (1195)
255 PF10211 Ax_dynein_light: Axon 76.2 48 0.001 28.2 11.6 14 86-99 145-158 (189)
256 PF09755 DUF2046: Uncharacteri 76.2 70 0.0015 30.1 14.1 40 82-124 254-293 (310)
257 KOG1103 Predicted coiled-coil 76.2 12 0.00027 36.5 7.7 76 42-120 219-300 (561)
258 TIGR02231 conserved hypothetic 76.1 47 0.001 31.7 11.5 38 82-119 138-175 (525)
259 PF02388 FemAB: FemAB family; 75.9 21 0.00046 33.3 9.0 53 66-119 244-296 (406)
260 PRK04406 hypothetical protein; 75.9 24 0.00053 26.3 7.7 43 64-110 11-53 (75)
261 PF09304 Cortex-I_coil: Cortex 75.9 41 0.00088 27.3 11.2 34 48-81 42-75 (107)
262 PF11802 CENP-K: Centromere-as 75.8 66 0.0014 29.7 12.6 25 105-129 156-180 (268)
263 PF08898 DUF1843: Domain of un 75.8 10 0.00022 27.3 5.4 36 82-117 17-52 (53)
264 PRK00409 recombination and DNA 75.8 69 0.0015 32.9 13.3 50 31-81 505-554 (782)
265 TIGR00237 xseA exodeoxyribonuc 75.6 75 0.0016 30.2 13.1 52 29-80 263-316 (432)
266 TIGR03319 YmdA_YtgF conserved 75.6 84 0.0018 30.8 14.2 36 91-126 103-138 (514)
267 KOG0612 Rho-associated, coiled 75.5 33 0.00072 37.6 11.2 49 83-131 617-665 (1317)
268 PF15035 Rootletin: Ciliary ro 75.5 39 0.00084 28.9 9.8 35 82-116 67-108 (182)
269 PF08700 Vps51: Vps51/Vps67; 75.2 27 0.00059 24.9 9.8 50 62-115 35-84 (87)
270 TIGR03752 conj_TIGR03752 integ 75.2 45 0.00097 33.0 11.3 78 45-126 61-139 (472)
271 PF10158 LOH1CR12: Tumour supp 75.2 44 0.00096 27.3 10.8 69 31-101 46-116 (131)
272 PRK04325 hypothetical protein; 75.0 24 0.00051 26.1 7.4 41 66-110 11-51 (74)
273 PF06657 Cep57_MT_bd: Centroso 75.0 20 0.00044 26.8 7.2 64 39-109 13-77 (79)
274 PF05781 MRVI1: MRVI1 protein; 74.9 88 0.0019 31.5 13.3 98 26-124 196-324 (538)
275 PF02403 Seryl_tRNA_N: Seryl-t 74.8 33 0.00073 25.7 9.0 78 48-126 27-104 (108)
276 COG1570 XseA Exonuclease VII, 74.7 83 0.0018 30.9 12.9 72 10-81 236-323 (440)
277 PF14193 DUF4315: Domain of un 74.6 33 0.00071 26.3 8.3 61 44-124 2-62 (83)
278 TIGR02680 conserved hypothetic 74.5 43 0.00094 36.3 11.9 68 44-111 883-957 (1353)
279 PF14257 DUF4349: Domain of un 74.4 14 0.00031 31.9 7.1 16 44-59 140-155 (262)
280 PF15480 DUF4640: Domain of un 74.3 2.9 6.4E-05 38.7 2.9 31 92-124 104-134 (292)
281 PF11488 Lge1: Transcriptional 74.1 33 0.00072 25.4 8.1 47 52-98 25-73 (80)
282 PRK08032 fliD flagellar cappin 74.0 41 0.0009 32.1 10.6 57 41-104 404-460 (462)
283 PF14389 Lzipper-MIP1: Leucine 73.7 19 0.00042 27.3 6.8 67 41-114 6-79 (88)
284 PF06120 Phage_HK97_TLTM: Tail 73.6 78 0.0017 29.4 13.9 33 48-80 72-104 (301)
285 PF03961 DUF342: Protein of un 73.6 29 0.00064 32.6 9.4 29 89-117 375-403 (451)
286 PF02183 HALZ: Homeobox associ 73.4 18 0.00039 24.7 5.9 26 86-111 16-41 (45)
287 KOG0239 Kinesin (KAR3 subfamil 73.3 1.1E+02 0.0025 31.2 15.3 12 185-196 361-372 (670)
288 COG4372 Uncharacterized protei 73.2 42 0.00091 33.1 10.4 70 45-118 212-281 (499)
289 COG3879 Uncharacterized protei 73.1 23 0.0005 32.2 8.3 29 47-75 54-82 (247)
290 KOG4687 Uncharacterized coiled 73.1 61 0.0013 30.9 11.2 82 40-124 20-129 (389)
291 KOG0980 Actin-binding protein 73.0 47 0.001 35.5 11.4 17 64-80 466-482 (980)
292 PF13514 AAA_27: AAA domain 72.8 45 0.00098 34.9 11.4 61 62-122 148-214 (1111)
293 PF11855 DUF3375: Protein of u 72.8 32 0.0007 33.0 9.7 96 39-135 118-221 (478)
294 PF13864 Enkurin: Calmodulin-b 72.7 9 0.0002 29.1 4.8 56 60-117 40-95 (98)
295 TIGR01554 major_cap_HK97 phage 72.6 26 0.00055 31.9 8.6 8 115-122 86-93 (378)
296 PF10481 CENP-F_N: Cenp-F N-te 72.6 23 0.00049 33.2 8.2 63 43-112 18-90 (307)
297 PF09787 Golgin_A5: Golgin sub 72.4 38 0.00083 32.6 10.1 42 40-81 113-172 (511)
298 TIGR00020 prfB peptide chain r 72.3 82 0.0018 29.9 12.0 86 31-116 11-112 (364)
299 TIGR00618 sbcc exonuclease Sbc 72.1 1.2E+02 0.0025 31.7 14.0 25 98-122 262-286 (1042)
300 COG3206 GumC Uncharacterized p 72.0 53 0.0011 30.7 10.6 32 102-133 372-403 (458)
301 KOG4074 Leucine zipper nuclear 72.0 43 0.00094 32.1 10.0 73 42-114 136-209 (383)
302 PF03938 OmpH: Outer membrane 72.0 42 0.00091 26.4 8.7 37 40-76 33-69 (158)
303 TIGR00293 prefoldin, archaeal 71.8 43 0.00094 25.7 11.1 42 86-127 83-124 (126)
304 KOG0977 Nuclear envelope prote 71.5 42 0.00091 33.7 10.3 31 49-79 91-121 (546)
305 PF06818 Fez1: Fez1; InterPro 71.4 61 0.0013 28.7 10.3 37 29-65 23-67 (202)
306 PF11285 DUF3086: Protein of u 71.4 11 0.00024 34.9 5.9 58 65-129 5-63 (283)
307 KOG0978 E3 ubiquitin ligase in 71.4 1.2E+02 0.0025 31.6 13.5 113 12-124 376-517 (698)
308 PRK11448 hsdR type I restricti 71.3 38 0.00081 36.3 10.5 16 11-26 128-143 (1123)
309 KOG0406 Glutathione S-transfer 71.2 19 0.00042 32.2 7.3 57 19-81 87-146 (231)
310 PF05622 HOOK: HOOK protein; 71.0 1.3 2.9E-05 43.8 0.0 89 42-131 238-342 (713)
311 PF12128 DUF3584: Protein of u 71.0 48 0.001 35.3 11.2 36 44-79 622-657 (1201)
312 PF00170 bZIP_1: bZIP transcri 70.9 32 0.0007 23.9 8.8 35 82-116 26-60 (64)
313 PF03961 DUF342: Protein of un 70.9 29 0.00064 32.6 8.8 35 95-129 374-408 (451)
314 PF04582 Reo_sigmaC: Reovirus 70.8 4.4 9.6E-05 38.0 3.3 32 86-117 123-154 (326)
315 TIGR03545 conserved hypothetic 70.5 50 0.0011 32.8 10.6 59 63-121 190-262 (555)
316 KOG1853 LIS1-interacting prote 70.2 89 0.0019 29.4 11.5 56 44-99 92-157 (333)
317 COG1842 PspA Phage shock prote 69.8 79 0.0017 27.9 10.9 41 41-81 90-130 (225)
318 PF12777 MT: Microtubule-bindi 69.8 28 0.0006 31.7 8.2 80 42-129 213-292 (344)
319 PF13747 DUF4164: Domain of un 69.7 48 0.001 25.3 10.2 33 90-122 40-72 (89)
320 KOG2391 Vacuolar sorting prote 69.6 71 0.0015 30.8 10.9 85 19-121 194-278 (365)
321 TIGR01069 mutS2 MutS2 family p 69.5 1.3E+02 0.0027 31.0 13.4 37 30-67 499-535 (771)
322 PF11740 KfrA_N: Plasmid repli 69.2 21 0.00046 27.0 6.2 50 31-80 69-118 (120)
323 PRK11519 tyrosine kinase; Prov 69.2 70 0.0015 32.1 11.4 27 104-130 371-397 (719)
324 PF05010 TACC: Transforming ac 69.1 81 0.0017 27.7 12.2 66 48-113 21-93 (207)
325 PLN03188 kinesin-12 family pro 69.1 74 0.0016 35.2 12.1 54 67-124 1200-1254(1320)
326 PF06156 DUF972: Protein of un 68.9 37 0.00081 26.9 7.7 46 72-117 9-57 (107)
327 PF07200 Mod_r: Modifier of ru 68.9 56 0.0012 25.9 13.8 42 40-81 45-86 (150)
328 PRK10361 DNA recombination pro 68.8 1.3E+02 0.0027 29.8 13.2 14 102-115 146-159 (475)
329 PHA03332 membrane glycoprotein 68.7 88 0.0019 34.4 12.4 55 43-97 905-963 (1328)
330 PF05600 DUF773: Protein of un 68.5 39 0.00085 33.1 9.3 59 52-114 434-492 (507)
331 PF14915 CCDC144C: CCDC144C pr 68.4 1.1E+02 0.0023 28.9 11.8 78 39-116 217-298 (305)
332 PF13094 CENP-Q: CENP-Q, a CEN 68.2 63 0.0014 26.1 10.0 70 48-128 25-94 (160)
333 PRK09841 cryptic autophosphory 68.1 1.1E+02 0.0023 30.8 12.4 29 45-73 269-297 (726)
334 KOG4603 TBP-1 interacting prot 68.0 47 0.001 29.5 8.8 20 40-59 97-116 (201)
335 PF05557 MAD: Mitotic checkpoi 67.8 25 0.00054 35.1 8.0 23 87-109 564-586 (722)
336 PRK00578 prfB peptide chain re 67.7 1.1E+02 0.0025 29.0 12.6 85 32-116 12-112 (367)
337 PF07246 Phlebovirus_NSM: Phle 67.7 48 0.001 30.5 9.1 26 56-81 160-185 (264)
338 KOG2417 Predicted G-protein co 67.4 20 0.00042 35.0 6.9 26 99-124 245-270 (462)
339 PRK00591 prfA peptide chain re 67.4 94 0.002 29.5 11.3 88 42-129 5-109 (359)
340 PRK15422 septal ring assembly 67.2 56 0.0012 25.3 9.7 23 86-108 50-72 (79)
341 PRK13729 conjugal transfer pil 67.1 25 0.00054 34.7 7.7 48 58-105 70-120 (475)
342 KOG0614 cGMP-dependent protein 67.1 21 0.00047 36.5 7.3 45 37-81 18-62 (732)
343 smart00502 BBC B-Box C-termina 67.0 47 0.001 24.2 13.2 10 106-115 82-91 (127)
344 PF07926 TPR_MLP1_2: TPR/MLP1/ 66.8 63 0.0014 25.6 12.2 16 46-61 6-21 (132)
345 PF05761 5_nucleotid: 5' nucle 66.7 27 0.00058 33.8 7.7 58 45-103 324-383 (448)
346 PF05008 V-SNARE: Vesicle tran 66.7 43 0.00094 23.7 8.2 52 61-116 22-74 (79)
347 PF14193 DUF4315: Domain of un 66.6 18 0.0004 27.7 5.4 35 84-118 3-37 (83)
348 PF15272 BBP1_C: Spindle pole 66.6 68 0.0015 28.3 9.5 18 60-77 103-120 (196)
349 COG0419 SbcC ATPase involved i 66.4 79 0.0017 32.4 11.3 85 42-129 472-560 (908)
350 KOG0933 Structural maintenance 66.0 47 0.001 36.0 9.8 33 82-114 472-504 (1174)
351 PF04859 DUF641: Plant protein 66.0 23 0.00049 29.3 6.2 23 48-70 78-100 (131)
352 PF14282 FlxA: FlxA-like prote 65.8 38 0.00083 26.3 7.2 42 40-81 23-68 (106)
353 PF06103 DUF948: Bacterial pro 65.7 51 0.0011 24.2 12.3 64 52-115 21-87 (90)
354 PF13805 Pil1: Eisosome compon 65.5 1.1E+02 0.0024 28.2 11.1 54 41-94 101-157 (271)
355 KOG0979 Structural maintenance 65.5 83 0.0018 34.1 11.5 77 39-119 625-701 (1072)
356 KOG0249 LAR-interacting protei 65.5 1E+02 0.0022 32.7 11.8 34 97-130 207-240 (916)
357 KOG0978 E3 ubiquitin ligase in 65.2 88 0.0019 32.4 11.3 75 40-114 535-612 (698)
358 PF09311 Rab5-bind: Rabaptin-l 65.0 6.4 0.00014 33.0 2.9 75 36-114 8-82 (181)
359 COG5374 Uncharacterized conser 65.0 17 0.00036 32.1 5.5 36 45-80 138-173 (192)
360 COG0172 SerS Seryl-tRNA synthe 64.9 1.1E+02 0.0023 29.9 11.3 83 42-131 28-110 (429)
361 PF10458 Val_tRNA-synt_C: Valy 64.8 43 0.00092 23.7 6.7 27 48-74 2-28 (66)
362 PF09302 XLF: XLF (XRCC4-like 64.7 9.8 0.00021 30.8 3.8 43 31-74 128-170 (171)
363 COG5493 Uncharacterized conser 64.6 1.1E+02 0.0024 27.7 11.9 59 12-79 1-61 (231)
364 TIGR01554 major_cap_HK97 phage 64.4 1.1E+02 0.0024 27.8 10.8 6 68-73 38-43 (378)
365 PRK00888 ftsB cell division pr 64.4 37 0.00081 26.5 6.8 33 84-116 29-61 (105)
366 PF02996 Prefoldin: Prefoldin 64.3 18 0.00038 27.3 4.9 63 12-76 55-117 (120)
367 TIGR00019 prfA peptide chain r 64.3 1.3E+02 0.0029 28.5 11.9 27 99-125 78-105 (360)
368 PRK00106 hypothetical protein; 64.1 1.6E+02 0.0035 29.4 14.2 41 87-127 120-160 (535)
369 PF05667 DUF812: Protein of un 64.0 91 0.002 31.4 11.0 76 45-124 330-408 (594)
370 KOG0612 Rho-associated, coiled 63.8 1E+02 0.0022 34.1 11.9 39 87-125 513-551 (1317)
371 PF05701 WEMBL: Weak chloropla 63.4 1.2E+02 0.0026 29.6 11.4 39 43-81 281-319 (522)
372 COG3524 KpsE Capsule polysacch 63.4 1.1E+02 0.0025 29.3 11.0 88 25-122 213-323 (372)
373 KOG0241 Kinesin-like protein [ 63.4 45 0.00098 36.6 9.1 65 31-95 346-424 (1714)
374 COG3937 Uncharacterized conser 63.3 31 0.00068 28.0 6.4 54 64-117 50-104 (108)
375 KOG2662 Magnesium transporters 63.2 84 0.0018 30.7 10.3 75 25-103 174-255 (414)
376 PF05859 Mis12: Mis12 protein; 63.1 6.1 0.00013 31.9 2.3 55 11-70 86-142 (144)
377 KOG1853 LIS1-interacting prote 63.0 1.4E+02 0.003 28.2 12.3 7 123-129 166-172 (333)
378 PF04576 Zein-binding: Zein-bi 62.9 75 0.0016 25.2 10.3 42 83-124 32-81 (94)
379 PRK13169 DNA replication intia 62.8 53 0.0011 26.4 7.6 33 83-115 23-55 (110)
380 PF05308 Mito_fiss_reg: Mitoch 62.8 7.6 0.00016 34.9 3.1 24 37-60 116-139 (253)
381 cd00632 Prefoldin_beta Prefold 62.8 28 0.0006 26.5 5.8 34 40-73 67-100 (105)
382 KOG0018 Structural maintenance 62.6 86 0.0019 34.2 11.0 52 30-81 386-440 (1141)
383 PF04849 HAP1_N: HAP1 N-termin 62.6 91 0.002 29.2 10.1 31 51-81 214-244 (306)
384 PF07794 DUF1633: Protein of u 62.4 41 0.00088 34.4 8.2 89 38-126 592-704 (790)
385 PF12128 DUF3584: Protein of u 62.4 2.2E+02 0.0049 30.5 15.5 50 82-131 490-539 (1201)
386 PF14257 DUF4349: Domain of un 62.1 66 0.0014 27.8 8.7 37 44-80 119-155 (262)
387 COG1777 Predicted transcriptio 62.1 62 0.0013 29.1 8.6 70 52-123 120-192 (217)
388 KOG0946 ER-Golgi vesicle-tethe 62.1 1E+02 0.0022 33.0 11.2 42 40-81 675-716 (970)
389 PTZ00419 valyl-tRNA synthetase 61.9 24 0.00052 36.7 6.9 27 48-74 927-953 (995)
390 PF06810 Phage_GP20: Phage min 61.7 69 0.0015 26.6 8.3 29 52-80 15-43 (155)
391 PF05483 SCP-1: Synaptonemal c 61.6 86 0.0019 32.8 10.5 60 40-99 230-299 (786)
392 PF13863 DUF4200: Domain of un 61.5 70 0.0015 24.4 14.9 85 40-124 29-116 (126)
393 PRK10929 putative mechanosensi 61.4 1.6E+02 0.0035 32.0 12.8 12 40-51 184-195 (1109)
394 COG1340 Uncharacterized archae 61.4 1E+02 0.0022 28.8 10.1 65 47-115 31-95 (294)
395 PF14992 TMCO5: TMCO5 family 61.3 35 0.00077 31.5 7.1 24 88-111 69-92 (280)
396 PF02601 Exonuc_VII_L: Exonucl 61.3 1.2E+02 0.0026 26.9 13.2 36 46-81 146-182 (319)
397 PF13935 Ead_Ea22: Ead/Ea22-li 61.2 86 0.0019 25.3 9.2 71 42-116 66-139 (139)
398 PRK00295 hypothetical protein; 61.2 61 0.0013 23.6 7.6 43 66-112 7-49 (68)
399 PF09730 BicD: Microtubule-ass 61.1 1.4E+02 0.003 31.0 11.9 16 45-60 368-383 (717)
400 KOG0964 Structural maintenance 61.0 99 0.0021 33.7 11.0 72 41-116 409-480 (1200)
401 PRK05431 seryl-tRNA synthetase 60.9 88 0.0019 29.7 9.9 37 91-127 68-104 (425)
402 KOG0243 Kinesin-like protein [ 60.8 1.6E+02 0.0036 31.9 12.6 76 21-104 430-512 (1041)
403 PF12761 End3: Actin cytoskele 60.8 1.2E+02 0.0026 26.8 10.6 27 49-75 95-121 (195)
404 PRK08724 fliD flagellar cappin 60.7 1.1E+02 0.0023 31.7 10.9 55 41-102 615-669 (673)
405 PF03938 OmpH: Outer membrane 60.6 81 0.0017 24.8 8.3 13 44-56 51-63 (158)
406 PF04871 Uso1_p115_C: Uso1 / p 60.5 92 0.002 25.4 10.8 72 47-122 2-74 (136)
407 PF10475 DUF2450: Protein of u 60.4 1.2E+02 0.0027 26.8 13.8 71 11-81 12-98 (291)
408 PF06785 UPF0242: Uncharacteri 60.4 1.7E+02 0.0037 28.5 13.9 94 29-122 64-181 (401)
409 KOG0239 Kinesin (KAR3 subfamil 60.3 1.4E+02 0.003 30.5 11.7 16 66-81 243-258 (670)
410 PF09738 DUF2051: Double stran 60.3 1.1E+02 0.0023 28.4 10.1 23 52-74 114-136 (302)
411 PF06637 PV-1: PV-1 protein (P 60.1 1.8E+02 0.0039 28.7 12.9 75 45-121 306-392 (442)
412 PRK06664 fliD flagellar hook-a 60.0 90 0.002 31.7 10.3 59 41-106 598-656 (661)
413 PF10267 Tmemb_cc2: Predicted 59.9 1.7E+02 0.0037 28.2 12.4 88 40-129 223-329 (395)
414 PF04012 PspA_IM30: PspA/IM30 59.9 1E+02 0.0023 25.8 11.5 105 15-124 24-140 (221)
415 KOG0972 Huntingtin interacting 59.9 44 0.00095 32.0 7.6 60 40-99 263-325 (384)
416 KOG3859 Septins (P-loop GTPase 59.8 54 0.0012 31.5 8.2 31 87-117 375-405 (406)
417 COG3074 Uncharacterized protei 59.8 79 0.0017 24.4 9.4 44 65-108 26-72 (79)
418 PF11740 KfrA_N: Plasmid repli 59.7 73 0.0016 24.0 7.9 35 37-71 82-116 (120)
419 PRK10807 paraquat-inducible pr 59.5 1.9E+02 0.0041 28.6 13.0 100 20-121 406-522 (547)
420 PRK03947 prefoldin subunit alp 59.5 33 0.00072 27.0 5.9 41 41-81 99-139 (140)
421 PF15272 BBP1_C: Spindle pole 59.4 75 0.0016 28.0 8.5 47 63-109 81-127 (196)
422 PRK14160 heat shock protein Gr 59.4 1.3E+02 0.0028 26.7 11.1 39 43-81 54-92 (211)
423 KOG2629 Peroxisomal membrane a 59.3 99 0.0022 29.1 9.7 65 46-117 118-182 (300)
424 COG1842 PspA Phage shock prote 59.2 1.3E+02 0.0028 26.7 14.1 11 24-34 23-33 (225)
425 PF13815 Dzip-like_N: Iguana/D 59.2 47 0.001 26.0 6.6 26 86-111 91-116 (118)
426 PF10226 DUF2216: Uncharacteri 59.0 1.3E+02 0.0029 26.7 11.3 52 52-103 22-76 (195)
427 PF03357 Snf7: Snf7; InterPro 58.8 86 0.0019 24.5 9.8 23 37-59 9-31 (171)
428 PF12072 DUF3552: Domain of un 58.7 1.1E+02 0.0025 25.9 14.6 43 61-103 75-117 (201)
429 PRK11519 tyrosine kinase; Prov 58.7 75 0.0016 31.9 9.4 15 66-80 341-355 (719)
430 PRK10869 recombination and rep 58.6 65 0.0014 31.6 8.8 47 82-128 334-385 (553)
431 PRK09737 EcoKI restriction-mod 58.3 26 0.00056 31.4 5.7 40 88-127 372-415 (461)
432 PF12808 Mto2_bdg: Micro-tubul 58.2 8.9 0.00019 27.3 2.2 28 33-60 19-46 (52)
433 COG2919 Septum formation initi 58.2 91 0.002 24.6 10.9 40 86-125 61-100 (117)
434 KOG2896 UV radiation resistanc 57.9 1.5E+02 0.0032 28.8 10.7 77 45-121 82-181 (377)
435 PF11570 E2R135: Coiled-coil r 57.8 72 0.0016 26.9 7.7 54 45-98 3-56 (136)
436 PF14739 DUF4472: Domain of un 57.5 1E+02 0.0022 24.9 10.1 61 40-111 32-92 (108)
437 COG3334 Uncharacterized conser 57.5 1.4E+02 0.0029 26.4 10.9 84 20-109 44-132 (192)
438 KOG4593 Mitotic checkpoint pro 57.5 2.5E+02 0.0054 29.4 12.9 25 100-124 238-262 (716)
439 PF02050 FliJ: Flagellar FliJ 57.4 68 0.0015 22.9 10.4 68 48-115 3-71 (123)
440 PF05531 NPV_P10: Nucleopolyhe 57.4 57 0.0012 24.9 6.5 23 93-115 39-61 (75)
441 COG5570 Uncharacterized small 57.3 24 0.00051 25.8 4.2 18 64-81 5-22 (57)
442 PF08606 Prp19: Prp19/Pso4-lik 57.1 58 0.0012 24.6 6.4 43 66-108 24-69 (70)
443 PF10212 TTKRSYEDQ: Predicted 57.1 2.2E+02 0.0048 28.7 12.2 81 41-121 418-516 (518)
444 PF10359 Fmp27_WPPW: RNA pol I 57.1 57 0.0012 31.3 8.1 42 90-131 194-235 (475)
445 PF04136 Sec34: Sec34-like fam 57.0 1.1E+02 0.0024 25.3 11.2 80 43-127 7-86 (157)
446 TIGR02449 conserved hypothetic 56.9 48 0.001 24.5 5.9 26 86-111 11-36 (65)
447 PF07798 DUF1640: Protein of u 56.8 1.1E+02 0.0025 25.3 12.8 31 50-80 58-89 (177)
448 PF11500 Cut12: Spindle pole b 56.7 18 0.0004 30.6 4.2 33 49-81 104-136 (152)
449 PRK06975 bifunctional uroporph 56.7 2.2E+02 0.0048 28.6 14.4 29 82-110 385-413 (656)
450 PRK11415 hypothetical protein; 56.5 38 0.00083 24.9 5.4 58 53-110 6-67 (74)
451 PRK06665 flgK flagellar hook-a 56.4 93 0.002 31.1 9.6 87 19-108 131-221 (627)
452 PF05546 She9_MDM33: She9 / Md 56.4 83 0.0018 28.1 8.3 32 50-81 32-63 (207)
453 PF06730 FAM92: FAM92 protein; 56.4 55 0.0012 29.3 7.3 73 57-129 4-94 (219)
454 PRK10636 putative ABC transpor 56.4 1.3E+02 0.0029 29.6 10.6 65 53-117 559-626 (638)
455 PRK10929 putative mechanosensi 56.3 2E+02 0.0044 31.3 12.5 25 41-65 213-237 (1109)
456 PF11262 Tho2: Transcription f 56.2 60 0.0013 29.3 7.7 63 40-102 28-91 (298)
457 PLN02678 seryl-tRNA synthetase 56.2 1.7E+02 0.0036 28.5 11.0 40 89-128 71-110 (448)
458 KOG2129 Uncharacterized conser 56.1 1.6E+02 0.0034 29.6 10.9 38 86-126 187-224 (552)
459 PF01576 Myosin_tail_1: Myosin 56.0 3.8 8.2E-05 42.1 0.0 75 45-119 182-259 (859)
460 PF05565 Sipho_Gp157: Siphovir 55.8 1.2E+02 0.0025 25.1 9.6 44 85-128 50-93 (162)
461 KOG0243 Kinesin-like protein [ 55.8 1.2E+02 0.0027 32.8 10.7 31 86-116 473-503 (1041)
462 PF07200 Mod_r: Modifier of ru 55.5 1E+02 0.0022 24.4 9.0 81 46-127 37-120 (150)
463 KOG2077 JNK/SAPK-associated pr 55.4 1.1E+02 0.0024 31.8 9.9 49 33-81 319-367 (832)
464 PF04375 HemX: HemX; InterPro 55.2 1.6E+02 0.0035 27.3 10.4 18 43-60 60-77 (372)
465 PF10367 Vps39_2: Vacuolar sor 55.2 75 0.0016 22.9 6.8 11 15-25 13-23 (109)
466 PF05266 DUF724: Protein of un 55.0 1.4E+02 0.003 25.7 13.1 31 86-116 121-151 (190)
467 PRK06975 bifunctional uroporph 54.9 1.4E+02 0.0031 29.9 10.6 34 48-81 362-395 (656)
468 COG4477 EzrA Negative regulato 54.7 1.6E+02 0.0034 30.0 10.8 83 42-124 346-435 (570)
469 PF10883 DUF2681: Protein of u 54.6 51 0.0011 25.6 6.0 35 83-117 24-58 (87)
470 KOG0976 Rho/Rac1-interacting s 54.6 1E+02 0.0022 33.4 9.7 31 47-77 327-357 (1265)
471 PRK14143 heat shock protein Gr 54.3 1.6E+02 0.0035 26.4 10.8 10 118-127 154-163 (238)
472 TIGR01730 RND_mfp RND family e 54.3 1.4E+02 0.0029 25.4 9.8 10 48-57 69-78 (322)
473 PF05852 DUF848: Gammaherpesvi 54.2 24 0.00052 29.8 4.5 6 29-34 39-44 (146)
474 PF06160 EzrA: Septation ring 54.2 1.7E+02 0.0037 28.7 10.9 59 40-102 348-406 (560)
475 PF04949 Transcrip_act: Transc 54.2 1.5E+02 0.0032 25.7 11.1 74 40-113 53-143 (159)
476 PF14077 WD40_alt: Alternative 54.2 8.1 0.00018 27.4 1.4 18 41-58 16-33 (48)
477 PF02994 Transposase_22: L1 tr 54.1 44 0.00095 31.2 6.6 11 114-124 208-218 (370)
478 PRK13922 rod shape-determining 54.1 1.5E+02 0.0032 25.8 11.0 38 83-120 70-107 (276)
479 KOG0962 DNA repair protein RAD 53.9 1.3E+02 0.0029 33.3 10.8 66 50-115 216-287 (1294)
480 TIGR02209 ftsL_broad cell divi 53.8 79 0.0017 22.6 6.8 43 32-76 15-57 (85)
481 KOG4360 Uncharacterized coiled 53.7 2.1E+02 0.0046 29.2 11.4 89 40-128 163-265 (596)
482 PF06548 Kinesin-related: Kine 53.6 2.5E+02 0.0053 28.2 12.1 15 67-81 430-444 (488)
483 PF05531 NPV_P10: Nucleopolyhe 53.5 43 0.00093 25.5 5.3 37 40-80 15-51 (75)
484 PF07111 HCR: Alpha helical co 53.5 2.9E+02 0.0064 29.0 12.7 35 47-81 518-552 (739)
485 PF15397 DUF4618: Domain of un 53.4 1.8E+02 0.0039 26.6 12.8 9 40-48 60-68 (258)
486 cd07666 BAR_SNX7 The Bin/Amphi 53.3 1.7E+02 0.0037 26.3 13.6 66 52-121 148-213 (243)
487 PF14357 DUF4404: Domain of un 53.2 28 0.0006 26.3 4.3 76 48-127 2-81 (85)
488 PF04363 DUF496: Protein of un 53.1 1.1E+02 0.0024 24.4 7.8 57 53-109 15-94 (95)
489 KOG0957 PHD finger protein [Ge 53.1 90 0.002 31.9 8.9 135 11-156 394-534 (707)
490 PF05700 BCAS2: Breast carcino 53.1 1.5E+02 0.0033 25.6 12.3 14 67-80 139-152 (221)
491 PF15003 HAUS2: HAUS augmin-li 53.0 2E+02 0.0042 26.9 12.7 85 40-124 87-192 (277)
492 PF07798 DUF1640: Protein of u 52.9 1.3E+02 0.0029 24.9 12.5 86 41-126 56-158 (177)
493 PF04065 Not3: Not1 N-terminal 52.9 59 0.0013 29.1 7.0 59 63-122 128-189 (233)
494 COG0598 CorA Mg2+ and Co2+ tra 52.9 1.7E+02 0.0037 26.2 10.0 82 40-121 177-259 (322)
495 PF14817 HAUS5: HAUS augmin-li 52.8 2.7E+02 0.0059 28.5 12.4 80 41-120 84-166 (632)
496 KOG0999 Microtubule-associated 52.7 1.2E+02 0.0027 31.4 9.8 75 46-120 145-225 (772)
497 PF05103 DivIVA: DivIVA protei 52.7 13 0.00027 28.4 2.4 43 84-126 27-69 (131)
498 PF02646 RmuC: RmuC family; I 52.7 1.1E+02 0.0024 27.5 8.8 59 49-110 1-62 (304)
499 KOG0244 Kinesin-like protein [ 52.6 49 0.0011 35.2 7.2 86 41-126 465-553 (913)
500 PRK00736 hypothetical protein; 52.3 89 0.0019 22.7 7.7 62 82-143 5-66 (68)
No 1
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=96.81 E-value=0.038 Score=45.12 Aligned_cols=92 Identities=18% Similarity=0.295 Sum_probs=61.3
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH---HHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 35 KITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DK---LGQAQADKERLSKENEALTNTVRKL 108 (207)
Q Consensus 35 kIts~A~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~---~r---L~~a~ee~~kL~kE~~sLa~TVKkL 108 (207)
|+-.-+.-.|+..+|..+..|-+...+|+..|..|+.|+..||..|- .+ ++...++..+....+.+|...|.-|
T Consensus 6 k~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~L 85 (143)
T PF12718_consen 6 KLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLL 85 (143)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHH
Confidence 44455778899999999999999999999999999999999999996 22 2333333344434444444444445
Q ss_pred hhhHHHHHHHHHHHHhhc
Q 028596 109 QRDVSKLEVFRKTLVQSL 126 (207)
Q Consensus 109 ~RDvaKLE~FKk~LmqSL 126 (207)
..+|...+.=-+.....|
T Consensus 86 Eeele~ae~~L~e~~ekl 103 (143)
T PF12718_consen 86 EEELEEAEKKLKETTEKL 103 (143)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 445444444334444333
No 2
>PRK11637 AmiB activator; Provisional
Probab=96.72 E-value=0.032 Score=51.50 Aligned_cols=108 Identities=19% Similarity=0.271 Sum_probs=51.3
Q ss_pred CCCChHHHHhhCCCCchhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH--
Q 028596 11 TFDLPEEVLQVLPSDPFEQLDVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQ-------SQIESIYSSLS-- 81 (207)
Q Consensus 11 ~f~Lp~eilsvLP~DP~EQLdlArkIts~A~atRVs~LEsE~~~LR~~LaEKd~~i~eLq-------~rvs~Le~~L~-- 81 (207)
-|.+..-|+.+| |-++- ..++++.-.+.++.++..+++++.++...|.+++ .++..++.++.
T Consensus 17 ~~~~~~~~~~~l-------l~~~~--~~~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~ 87 (428)
T PRK11637 17 RFAIRPILYASV-------LSAGV--LLCAFSAHASDNRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQA 87 (428)
T ss_pred hhhhhhHHHHHH-------HHHHH--HHhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666655 22221 2222222223444444444444444444444333 33333333333
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcc
Q 028596 82 -DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLK 127 (207)
Q Consensus 82 -~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDvaKLE~FKk~LmqSLq 127 (207)
.++....++...+.++.+.|...++.+..++..++.--+.++..+.
T Consensus 88 ~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~~rlra~Y 134 (428)
T PRK11637 88 SRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLAAQLDAAF 134 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555555555555555566666555555544444444443
No 3
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=96.72 E-value=0.031 Score=46.81 Aligned_cols=82 Identities=26% Similarity=0.434 Sum_probs=29.8
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 028596 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEV 117 (207)
Q Consensus 41 ~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~---~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDvaKLE~ 117 (207)
++.|+..+..++..|+.++.++...|.+|+..+..|+..+. ..|+.....+..|..|..+|--+...+...+.+|+.
T Consensus 93 l~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~ 172 (194)
T PF08614_consen 93 LAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEE 172 (194)
T ss_dssp ---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555555555555555544 344444444444445555554444444444444444
Q ss_pred HHHHH
Q 028596 118 FRKTL 122 (207)
Q Consensus 118 FKk~L 122 (207)
=-+.|
T Consensus 173 En~~L 177 (194)
T PF08614_consen 173 ENREL 177 (194)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 33333
No 4
>PRK10884 SH3 domain-containing protein; Provisional
Probab=96.54 E-value=0.046 Score=47.38 Aligned_cols=69 Identities=26% Similarity=0.382 Sum_probs=42.2
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 028596 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKL 115 (207)
Q Consensus 40 A~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDvaKL 115 (207)
....|+-+||.|+..|+++|++-+... ..+.. +++.++..+.+...+|.+||+.|...+..+..++..|
T Consensus 90 ~~~~rlp~le~el~~l~~~l~~~~~~~---~~~~~----~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l 158 (206)
T PRK10884 90 SLRTRVPDLENQVKTLTDKLNNIDNTW---NQRTA----EMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAA 158 (206)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhHH---HHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455788899999999999998765432 22222 2233333555555556666666666666665555443
No 5
>PRK11637 AmiB activator; Provisional
Probab=96.42 E-value=0.08 Score=48.89 Aligned_cols=68 Identities=9% Similarity=0.180 Sum_probs=27.7
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 028596 43 TRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSK 114 (207)
Q Consensus 43 tRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDvaK 114 (207)
.+...++.++..|..++.+-...|.+++.++..++.++. ...++..+++++.+.+...++++.|.+.+
T Consensus 68 ~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~----~l~~eI~~~q~~l~~~~~~l~~rlra~Y~ 135 (428)
T PRK11637 68 QQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQID----ELNASIAKLEQQQAAQERLLAAQLDAAFR 135 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444444444444444444333333333 44444444444444444444444444333
No 6
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=96.37 E-value=0.056 Score=39.94 Aligned_cols=65 Identities=28% Similarity=0.424 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 028596 54 ALRSQLAEKDSRIAELQSQIESIY---SSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVF 118 (207)
Q Consensus 54 ~LR~~LaEKd~~i~eLq~rvs~Le---~~L~~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDvaKLE~F 118 (207)
.|...|+|||..|+.|.+.-..|- ..+..-++..+..+..+.++.+.|...+.++..++..|+.+
T Consensus 2 sl~~~l~EKDe~Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~ 69 (74)
T PF12329_consen 2 SLEKKLAEKDEQIAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEER 69 (74)
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467789999999999995554444 33334445555555555566666665555555555555544
No 7
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=96.26 E-value=0.073 Score=53.34 Aligned_cols=82 Identities=29% Similarity=0.431 Sum_probs=73.5
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 028596 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS------DKLGQAQADKERLSKENEALTNTVRKLQRDVS 113 (207)
Q Consensus 40 A~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~------~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDva 113 (207)
++-.+|.+||.|++.|+..+.+..+.|..|+.++..+...+. -.+.....++..|.++...=...|.-|.|.++
T Consensus 426 ~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~ 505 (652)
T COG2433 426 KLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLA 505 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888999999999999999999999999999999999988877 44556777889999999999999999999999
Q ss_pred HHHHHHHH
Q 028596 114 KLEVFRKT 121 (207)
Q Consensus 114 KLE~FKk~ 121 (207)
.|+..++-
T Consensus 506 ~l~k~~~l 513 (652)
T COG2433 506 ELRKMRKL 513 (652)
T ss_pred HHHHHHhh
Confidence 99988873
No 8
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=96.21 E-value=0.062 Score=45.02 Aligned_cols=72 Identities=18% Similarity=0.344 Sum_probs=47.3
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhHHHH
Q 028596 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTV-RKLQRDVSKL 115 (207)
Q Consensus 40 A~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~~sLa~TV-KkL~RDvaKL 115 (207)
.+...+..|+.++..|...+.||...+..|++-+.+|.-++. .+.++..+|.+||+.|.... ++-+++..+|
T Consensus 120 ~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~----~~e~k~~~l~~En~~Lv~Rwm~~k~~eAe~m 192 (194)
T PF08614_consen 120 ELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLN----MLEEKLRKLEEENRELVERWMQRKAQEAERM 192 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344455555555556666666666666666666666666665 88999999999999998763 4444554443
No 9
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=96.20 E-value=0.12 Score=49.64 Aligned_cols=68 Identities=22% Similarity=0.298 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------------------HHHHHHHHHHHHHHHHHHHHHH
Q 028596 49 ESEHSALRSQLAEKDSRIAELQSQIESIYSSLS-------------------------DKLGQAQADKERLSKENEALTN 103 (207)
Q Consensus 49 EsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~-------------------------~rL~~a~ee~~kL~kE~~sLa~ 103 (207)
|.=++.||..+....++..+||.+-..+|..|+ -.-..+++|++.|.+|+++|+.
T Consensus 284 eelar~Lr~~I~~VarENs~LqrQKle~e~~l~a~qeakek~~KEAqareaklqaec~rQ~qlaLEEKaaLrkerd~L~k 363 (442)
T PF06637_consen 284 EELARSLRAGIERVARENSDLQRQKLEAEQGLQASQEAKEKAGKEAQAREAKLQAECARQTQLALEEKAALRKERDSLAK 363 (442)
T ss_pred HHHHHHHhhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444566666666666666666666666666554 2223467888999999999999
Q ss_pred HHHHHhhhHHHHH
Q 028596 104 TVRKLQRDVSKLE 116 (207)
Q Consensus 104 TVKkL~RDvaKLE 116 (207)
.+-...|+++.|+
T Consensus 364 eLeekkreleql~ 376 (442)
T PF06637_consen 364 ELEEKKRELEQLK 376 (442)
T ss_pred HHHHHHHHHHHHH
Confidence 9888888877654
No 10
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=95.98 E-value=0.51 Score=39.11 Aligned_cols=84 Identities=26% Similarity=0.389 Sum_probs=64.3
Q ss_pred HHHHhhhhhHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 028596 40 AISTRVSDLESEHSALRSQLA-------EKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDV 112 (207)
Q Consensus 40 A~atRVs~LEsE~~~LR~~La-------EKd~~i~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDv 112 (207)
-+..||-+||+|+........ .+.+.|..|+.+++.+...+. ....+...|.+||..|.....+.+..|
T Consensus 21 sle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~----~L~~EL~~l~sEk~~L~k~lq~~q~kv 96 (140)
T PF10473_consen 21 SLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELN----QLELELDTLRSEKENLDKELQKKQEKV 96 (140)
T ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577889999998776655433 344555666666666666665 888999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcc
Q 028596 113 SKLEVFRKTLVQSLK 127 (207)
Q Consensus 113 aKLE~FKk~LmqSLq 127 (207)
+-||.....+-.-|+
T Consensus 97 ~eLE~~~~~~~~~l~ 111 (140)
T PF10473_consen 97 SELESLNSSLENLLQ 111 (140)
T ss_pred HHHHHHhHHHHHHHH
Confidence 999988776655544
No 11
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=95.94 E-value=0.19 Score=40.24 Aligned_cols=30 Identities=20% Similarity=0.297 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 52 HSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (207)
Q Consensus 52 ~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~ 81 (207)
+.+|+.+++++.+.+..++.+...++..+.
T Consensus 75 ~~rL~~~~~~~ere~~~~~~~~~~l~~~~~ 104 (151)
T PF11559_consen 75 VERLKEQLEELERELASAEEKERQLQKQLK 104 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555555555555555555554
No 12
>PRK09039 hypothetical protein; Validated
Probab=95.94 E-value=0.16 Score=46.51 Aligned_cols=88 Identities=17% Similarity=0.233 Sum_probs=68.5
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-HHHH
Q 028596 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRD-VSKL 115 (207)
Q Consensus 40 A~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~---~rL~~a~ee~~kL~kE~~sLa~TVKkL~RD-vaKL 115 (207)
....|+..|+.+...++...+|....|.-|+.++..|..+|. +.|..+.++....+...+.|...+.+.-.+ +..|
T Consensus 113 ~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~~~~~l 192 (343)
T PRK09039 113 AAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVALAQRVQEL 192 (343)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777778888888888888888888888888888877 667777777777777777777777666544 8889
Q ss_pred HHHHHHHHhhcc
Q 028596 116 EVFRKTLVQSLK 127 (207)
Q Consensus 116 E~FKk~LmqSLq 127 (207)
+.||..+..-|.
T Consensus 193 ~~~~~~~~~~l~ 204 (343)
T PRK09039 193 NRYRSEFFGRLR 204 (343)
T ss_pred HHhHHHHHHHHH
Confidence 999999977665
No 13
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=95.40 E-value=0.32 Score=43.52 Aligned_cols=21 Identities=33% Similarity=0.544 Sum_probs=11.7
Q ss_pred HHHHhhhhhHHHHHHHHHHHH
Q 028596 40 AISTRVSDLESEHSALRSQLA 60 (207)
Q Consensus 40 A~atRVs~LEsE~~~LR~~La 60 (207)
.|..-|+.+|.++..+|.++.
T Consensus 56 ~le~qv~~~e~ei~~~r~r~~ 76 (239)
T COG1579 56 DLENQVSQLESEIQEIRERIK 76 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555555544
No 14
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=95.23 E-value=0.68 Score=41.44 Aligned_cols=71 Identities=17% Similarity=0.358 Sum_probs=47.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH---------HHHHHHHHHHHHHHHHHHHhhhH
Q 028596 45 VSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQA---------DKERLSKENEALTNTVRKLQRDV 112 (207)
Q Consensus 45 Vs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~---~rL~~a~e---------e~~kL~kE~~sLa~TVKkL~RDv 112 (207)
+.++.+|..+++..+.+++..+.+|+.+++.++..++ .|+..+.. +...|..|.+.+......|+.++
T Consensus 33 l~k~~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl~~v~~~~e~~aL~~E~~~ak~r~~~le~el 112 (239)
T COG1579 33 LKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINSLEDEL 112 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888888888888888888888888888888 44443332 22445555555555555555555
Q ss_pred HHH
Q 028596 113 SKL 115 (207)
Q Consensus 113 aKL 115 (207)
+.|
T Consensus 113 ~~l 115 (239)
T COG1579 113 AEL 115 (239)
T ss_pred HHH
Confidence 443
No 15
>PHA02562 46 endonuclease subunit; Provisional
Probab=95.21 E-value=0.46 Score=44.27 Aligned_cols=96 Identities=10% Similarity=0.233 Sum_probs=58.2
Q ss_pred HhhCCCCchhhHHHHHHHHHH--------HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 19 LQVLPSDPFEQLDVARKITSI--------AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQAD 90 (207)
Q Consensus 19 lsvLP~DP~EQLdlArkIts~--------A~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~~rL~~a~ee 90 (207)
...++..|.+--.+-.+|... ..+.++..++.++..|+.++.+....+..++..+..++..+...+....++
T Consensus 142 ~~f~~~~~~er~~il~~l~~~~~~~~~~~~~k~~~~e~~~~i~~l~~~i~~l~~~i~~~~~~i~~~~~~~~~~i~~l~~e 221 (562)
T PHA02562 142 VPFMQLSAPARRKLVEDLLDISVLSEMDKLNKDKIRELNQQIQTLDMKIDHIQQQIKTYNKNIEEQRKKNGENIARKQNK 221 (562)
T ss_pred hhHhcCChHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 444555556655555555533 456677788888888888888888888877777777766655444444444
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHH
Q 028596 91 KERLSKENEALTNTVRKLQRDVSK 114 (207)
Q Consensus 91 ~~kL~kE~~sLa~TVKkL~RDvaK 114 (207)
..+|..+...|...+..|..++..
T Consensus 222 ~~~l~~~~~~l~~~l~~l~~~i~~ 245 (562)
T PHA02562 222 YDELVEEAKTIKAEIEELTDELLN 245 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444433
No 16
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=95.17 E-value=0.46 Score=37.99 Aligned_cols=71 Identities=21% Similarity=0.372 Sum_probs=55.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 028596 46 SDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRK 120 (207)
Q Consensus 46 s~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDvaKLE~FKk 120 (207)
..|+..+.+|+..+..-...+..|+.+++.++.++. .+..+...|.++...+..++|.+..++.||.+-=.
T Consensus 55 e~l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~----~~~~~~~~l~~~~~~~~~~~k~~kee~~klk~~~~ 125 (151)
T PF11559_consen 55 EDLSDKLRRLRSDIERLQNDVERLKEQLEELERELA----SAEEKERQLQKQLKSLEAKLKQEKEELQKLKNQLQ 125 (151)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666666667777888888888888887 78888888999999999999999999999875433
No 17
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=95.11 E-value=0.8 Score=38.82 Aligned_cols=85 Identities=24% Similarity=0.368 Sum_probs=42.1
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH----
Q 028596 42 STRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSK---- 114 (207)
Q Consensus 42 atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~---~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDvaK---- 114 (207)
+..+..++..+..||..+.+....|.+.++++..+..++. ..|....+...+..+....+.+.++...+.+..
T Consensus 62 ~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 141 (302)
T PF10186_consen 62 KREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLSASQDLVESRQEQLEELQNELEERKQRLSQLQSQ 141 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555556666666666666666666666666655 333322233333334444444444444444433
Q ss_pred HHHHHHHHHhhc
Q 028596 115 LEVFRKTLVQSL 126 (207)
Q Consensus 115 LE~FKk~LmqSL 126 (207)
+..=++.+++.|
T Consensus 142 l~~~r~~l~~~l 153 (302)
T PF10186_consen 142 LARRRRQLIQEL 153 (302)
T ss_pred HHHHHHHHHHHH
Confidence 344455555543
No 18
>PRK03918 chromosome segregation protein; Provisional
Probab=95.05 E-value=1 Score=44.34 Aligned_cols=94 Identities=24% Similarity=0.305 Sum_probs=40.2
Q ss_pred hCCCCchhhHHHHHHHHHHHHHHhhhhhHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHH
Q 028596 21 VLPSDPFEQLDVARKITSIAISTRVSDLESEH----------SALRSQLAEKDSRIAELQSQIESIYSSLS------DKL 84 (207)
Q Consensus 21 vLP~DP~EQLdlArkIts~A~atRVs~LEsE~----------~~LR~~LaEKd~~i~eLq~rvs~Le~~L~------~rL 84 (207)
++..|-|+++.-..+-....+..++..|+..+ ..++.++++....+..++.++..++..+. ..|
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~i~~~l~~l~~~~~~l~~ei~~l~~e~~~l~~~~~~~~~~l~~l 233 (880)
T PRK03918 154 ILGLDDYENAYKNLGEVIKEIKRRIERLEKFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEKLEKEVKEL 233 (880)
T ss_pred HhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555544444444444555554444443 23333333444444444444444444443 233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 028596 85 GQAQADKERLSKENEALTNTVRKLQRDVSK 114 (207)
Q Consensus 85 ~~a~ee~~kL~kE~~sLa~TVKkL~RDvaK 114 (207)
....++...|.++...|....+.+..++.+
T Consensus 234 ~~~~~~~~~l~~~~~~l~~~~~~l~~~i~~ 263 (880)
T PRK03918 234 EELKEEIEELEKELESLEGSKRKLEEKIRE 263 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444433333
No 19
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=94.84 E-value=1.1 Score=36.62 Aligned_cols=82 Identities=17% Similarity=0.342 Sum_probs=43.7
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 028596 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLE 116 (207)
Q Consensus 40 A~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~---~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDvaKLE 116 (207)
....+.+.|+.|+..+...+.+...++..+++....+...+. +++....+...++.+|-..|.+-++.+.+.+..++
T Consensus 85 ~~~~~l~~l~~el~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~ 164 (191)
T PF04156_consen 85 ELQQQLQQLQEELDQLQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIKELEKEIRELQKELQDSREEVQELR 164 (191)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555566666666666666666666555555554443333 55666666666666666555543444444444444
Q ss_pred HHHHH
Q 028596 117 VFRKT 121 (207)
Q Consensus 117 ~FKk~ 121 (207)
...+.
T Consensus 165 ~~~~~ 169 (191)
T PF04156_consen 165 SQLER 169 (191)
T ss_pred HHHHH
Confidence 43333
No 20
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=94.75 E-value=1.9 Score=37.12 Aligned_cols=89 Identities=17% Similarity=0.196 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028596 30 LDVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQ 109 (207)
Q Consensus 30 LdlArkIts~A~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~~sLa~TVKkL~ 109 (207)
|+|..+-..+||......||+....|...|.+..+.|.++..+=-.-+.+...+|+...++-..+...|-.+...+..|.
T Consensus 123 LeLl~~~g~naW~~~n~~Le~~~~~le~~l~~~k~~ie~vN~~RK~~Q~~~~~~L~~Le~~W~~~v~kn~eie~a~~~Le 202 (221)
T PF05700_consen 123 LELLSKYGENAWLIHNEQLEAMLKRLEKELAKLKKEIEEVNRERKRRQEEAGEELRYLEQRWKELVSKNLEIEVACEELE 202 (221)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57778888899999999999999999999999999999997655555555557777777777777777777777777777
Q ss_pred hhHHHHHHH
Q 028596 110 RDVSKLEVF 118 (207)
Q Consensus 110 RDvaKLE~F 118 (207)
++|..|+.=
T Consensus 203 ~ei~~l~~~ 211 (221)
T PF05700_consen 203 QEIEQLKRK 211 (221)
T ss_pred HHHHHHHHH
Confidence 777666543
No 21
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=94.71 E-value=1.7 Score=40.40 Aligned_cols=97 Identities=22% Similarity=0.304 Sum_probs=77.6
Q ss_pred hHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH----------------
Q 028596 29 QLDVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQA---------------- 89 (207)
Q Consensus 29 QLdlArkIts~A~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~---~rL~~a~e---------------- 89 (207)
.|.-...-|..||..||...+.--..|-.++.+-...|++++.-+..|+.++. +-|+.|.-
T Consensus 237 dl~~Q~~~vn~al~~Ri~et~~ak~~Le~ql~~~~~ei~~~e~~i~~L~~ai~~k~~~lkvaqTRL~~R~~RP~vElcrD 316 (384)
T PF03148_consen 237 DLRAQADAVNAALRKRIHETQEAKNELEWQLKKTLQEIAEMEKNIEDLEKAIRDKEGPLKVAQTRLENRTQRPNVELCRD 316 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhHhcCCchHHHHh
Confidence 34444455777999999998888888888888888999999999999999888 23332222
Q ss_pred -HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Q 028596 90 -DKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQS 125 (207)
Q Consensus 90 -e~~kL~kE~~sLa~TVKkL~RDvaKLE~FKk~LmqS 125 (207)
-+..|..|-..|..++.+|+..+...+...+.|...
T Consensus 317 ~~q~~L~~Ev~~l~~~i~~L~~~L~~a~~~l~~L~~~ 353 (384)
T PF03148_consen 317 PPQYGLIEEVKELRESIEALQEKLDEAEASLQKLERT 353 (384)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 237899999999999999999999999888888763
No 22
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=94.68 E-value=0.94 Score=42.16 Aligned_cols=87 Identities=31% Similarity=0.449 Sum_probs=53.2
Q ss_pred HHHHHhhhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHh
Q 028596 39 IAISTRVSDLESEHSALRSQLA-EKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNT--------VRKLQ 109 (207)
Q Consensus 39 ~A~atRVs~LEsE~~~LR~~La-EKd~~i~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~~sLa~T--------VKkL~ 109 (207)
|.+..|+.+|-.|-..|=.+|. |...++.-|+.++..|+.... .......+|.+|+-.|.+| |.+|.
T Consensus 109 n~L~rkl~qLr~EK~~lE~~Le~EqE~~V~kL~k~i~~Le~e~~----~~q~~le~Lr~EKVdlEn~LE~EQE~lvN~L~ 184 (310)
T PF09755_consen 109 NDLSRKLNQLRQEKVELENQLEQEQEYLVNKLQKKIERLEKEKS----AKQEELERLRREKVDLENTLEQEQEALVNRLW 184 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH----HhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444 344455555555555554332 2233334677777777666 57899
Q ss_pred hhHHHHHHHHHHHHhhcccc
Q 028596 110 RDVSKLEVFRKTLVQSLKDD 129 (207)
Q Consensus 110 RDvaKLE~FKk~LmqSLq~D 129 (207)
+.+++|++=||.|=..|..-
T Consensus 185 Kqm~~l~~eKr~Lq~~l~~~ 204 (310)
T PF09755_consen 185 KQMDKLEAEKRRLQEKLEQP 204 (310)
T ss_pred HHHHHHHHHHHHHHHHHccc
Confidence 99999999999988887653
No 23
>PRK02224 chromosome segregation protein; Provisional
Probab=94.42 E-value=1.5 Score=43.55 Aligned_cols=13 Identities=15% Similarity=0.376 Sum_probs=5.0
Q ss_pred CchhhHHHHHHHH
Q 028596 25 DPFEQLDVARKIT 37 (207)
Q Consensus 25 DP~EQLdlArkIt 37 (207)
+|-+-.++-.+|.
T Consensus 147 ~p~~R~~ii~~l~ 159 (880)
T PRK02224 147 TPSDRQDMIDDLL 159 (880)
T ss_pred CHHHHHHHHHHHh
Confidence 4433333333333
No 24
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=94.35 E-value=2 Score=36.06 Aligned_cols=101 Identities=20% Similarity=0.248 Sum_probs=53.3
Q ss_pred CCchhhHHHHHHHHHHHH---HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Q 028596 24 SDPFEQLDVARKITSIAI---STRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS----DKLGQAQADKERLSK 96 (207)
Q Consensus 24 ~DP~EQLdlArkIts~A~---atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~----~rL~~a~ee~~kL~k 96 (207)
.||..-|+.+++=...+| ..-|...-+....|..++.+-...+..+++++ +.+|. +.-+.+..+...+..
T Consensus 22 EDP~~~l~q~ird~e~~l~~a~~~~a~~~a~~~~le~~~~~~~~~~~~~~~~A---~~Al~~g~edLAr~al~~k~~~e~ 98 (221)
T PF04012_consen 22 EDPEKMLEQAIRDMEEQLRKARQALARVMANQKRLERKLDEAEEEAEKWEKQA---ELALAAGREDLAREALQRKADLEE 98 (221)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHcCCHHHHHHHHHHHHHHHH
Confidence 367766666653222221 22233333333444444444444444444443 33344 444566777777777
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhhcc
Q 028596 97 ENEALTNTVRKLQRDVSKLEVFRKTLVQSLK 127 (207)
Q Consensus 97 E~~sLa~TVKkL~RDvaKLE~FKk~LmqSLq 127 (207)
+...|..++..+...+.+|+..-+.|-..|.
T Consensus 99 ~~~~l~~~~~~~~~~~~~l~~~l~~l~~kl~ 129 (221)
T PF04012_consen 99 QAERLEQQLDQAEAQVEKLKEQLEELEAKLE 129 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777777777777777666665555544443
No 25
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=94.29 E-value=1.2 Score=36.50 Aligned_cols=77 Identities=21% Similarity=0.340 Sum_probs=51.2
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 40 AISTRVSDLESEHSALRSQLAEKDSR----------IAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVR 106 (207)
Q Consensus 40 A~atRVs~LEsE~~~LR~~LaEKd~~----------i~eLq~rvs~Le~~L~---~rL~~a~ee~~kL~kE~~sLa~TVK 106 (207)
++-.|++.||.++..+..+|.+-... ...|+.|+..||.+|- .+|+.+.+........-+-+...|+
T Consensus 39 sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~ 118 (143)
T PF12718_consen 39 SLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVK 118 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 67888888888888887777643333 3446777777777776 6677776666666666666666666
Q ss_pred HHhhhHHHHH
Q 028596 107 KLQRDVSKLE 116 (207)
Q Consensus 107 kL~RDvaKLE 116 (207)
.|......+|
T Consensus 119 ~le~~~~~~E 128 (143)
T PF12718_consen 119 ALEQERDQWE 128 (143)
T ss_pred HHHhhHHHHH
Confidence 6655544433
No 26
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=94.19 E-value=1.3 Score=43.32 Aligned_cols=43 Identities=16% Similarity=0.311 Sum_probs=33.8
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Q 028596 39 IAISTRVSDLESEHSALRSQLAE--KDSRIAELQSQIESIYSSLS 81 (207)
Q Consensus 39 ~A~atRVs~LEsE~~~LR~~LaE--Kd~~i~eLq~rvs~Le~~L~ 81 (207)
.++..+...+|.|+..|..+|.. ....|..|++++..++..+.
T Consensus 394 ~~~~~~~~~~e~el~~l~~~l~~~~~~e~i~~l~e~l~~l~~~l~ 438 (650)
T TIGR03185 394 SQLLKELRELEEELAEVDKKISTIPSEEQIAQLLEELGEAQNELF 438 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH
Confidence 47778899999999999999974 34677777777777777665
No 27
>PHA02562 46 endonuclease subunit; Provisional
Probab=94.18 E-value=0.74 Score=42.91 Aligned_cols=38 Identities=16% Similarity=0.274 Sum_probs=17.1
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 42 STRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSS 79 (207)
Q Consensus 42 atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~ 79 (207)
..|+..++.++..+|..+.++-..+..|+.++..|+..
T Consensus 336 ~~~i~el~~~i~~~~~~i~~~~~~~~~l~~ei~~l~~~ 373 (562)
T PHA02562 336 SKKLLELKNKISTNKQSLITLVDKAKKVKAAIEELQAE 373 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34444444444444444444444444444444444443
No 28
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=93.99 E-value=2.1 Score=32.67 Aligned_cols=79 Identities=22% Similarity=0.289 Sum_probs=57.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH-------HHHH
Q 028596 45 VSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVS-------KLEV 117 (207)
Q Consensus 45 Vs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDva-------KLE~ 117 (207)
+-++|.+...++..+..|-..+..+++++..|+.+.. .+.++.-.+-+-+++|.+-+|+|+..++ .|..
T Consensus 5 L~~~~~a~~~~~~~~~~k~~~~~~lE~k~~rl~~Ek~----kadqkyfa~mr~~d~l~~e~k~L~~~~~Ks~~~i~~L~~ 80 (96)
T PF08647_consen 5 LVSMEQAFKELSEQADKKVKELTILEQKKLRLEAEKA----KADQKYFAAMRSKDALDNEMKKLNTQLSKSSELIEQLKE 80 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 4568889999999999999999999999999999998 5555555555556666666666555554 4555
Q ss_pred HHHHHHhhcc
Q 028596 118 FRKTLVQSLK 127 (207)
Q Consensus 118 FKk~LmqSLq 127 (207)
.=+.+++.|.
T Consensus 81 ~E~~~~~~l~ 90 (96)
T PF08647_consen 81 TEKEFVRKLK 90 (96)
T ss_pred HHHHHHHHHH
Confidence 4455555443
No 29
>KOG3990 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.92 E-value=0.27 Score=45.33 Aligned_cols=34 Identities=29% Similarity=0.413 Sum_probs=31.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 45 VSDLESEHSALRSQLAEKDSRIAELQSQIESIYS 78 (207)
Q Consensus 45 Vs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~ 78 (207)
+..|+.||++|+..|.+||+.|-+-.++++.|-.
T Consensus 227 i~~lkeeia~Lkk~L~qkdq~ileKdkqisnLKa 260 (305)
T KOG3990|consen 227 IQKLKEEIARLKKLLHQKDQLILEKDKQISNLKA 260 (305)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHhhhhhhhccCc
Confidence 4689999999999999999999999999998865
No 30
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=93.84 E-value=0.78 Score=42.65 Aligned_cols=72 Identities=21% Similarity=0.415 Sum_probs=58.8
Q ss_pred HHHHhhhhhHHHHHHHHHHHHH----------------HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 40 AISTRVSDLESEHSALRSQLAE----------------KDSRI---AELQSQIESIYSSLSDKLGQAQADKERLSKENEA 100 (207)
Q Consensus 40 A~atRVs~LEsE~~~LR~~LaE----------------Kd~~i---~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~~s 100 (207)
.+..|+..++.++.-||.+++. |...| +.+++++..|+..|+ ...++.+.|..|+|.
T Consensus 90 ~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qLe~d~q----s~lDEkeEl~~ERD~ 165 (319)
T PF09789_consen 90 ELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQLERDLQ----SLLDEKEELVTERDA 165 (319)
T ss_pred HHHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 7777888888888888877654 44444 556678888999988 999999999999999
Q ss_pred HHHHHHHHhhhHHHH
Q 028596 101 LTNTVRKLQRDVSKL 115 (207)
Q Consensus 101 La~TVKkL~RDvaKL 115 (207)
...-+-+||.++..+
T Consensus 166 yk~K~~RLN~ELn~~ 180 (319)
T PF09789_consen 166 YKCKAHRLNHELNYI 180 (319)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998653
No 31
>PRK10884 SH3 domain-containing protein; Provisional
Probab=93.80 E-value=1 Score=39.08 Aligned_cols=66 Identities=14% Similarity=0.237 Sum_probs=40.1
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 028596 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDV 112 (207)
Q Consensus 40 A~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDv 112 (207)
++...+.+|+.+...++++.. ...++|++++...+.... ...++|.+|.+|...+.+.+..|+..+
T Consensus 97 ~le~el~~l~~~l~~~~~~~~---~~~~~l~~~~~~~~~~~~----~L~~~n~~L~~~l~~~~~~~~~l~~~~ 162 (206)
T PRK10884 97 DLENQVKTLTDKLNNIDNTWN---QRTAEMQQKVAQSDSVIN----GLKEENQKLKNQLIVAQKKVDAANLQL 162 (206)
T ss_pred HHHHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567788888888888776654 555556666666555554 445555555555555555555554443
No 32
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=93.70 E-value=0.99 Score=43.88 Aligned_cols=71 Identities=18% Similarity=0.236 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccc
Q 028596 54 ALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLKD 128 (207)
Q Consensus 54 ~LR~~LaEKd~~i~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDvaKLE~FKk~LmqSLq~ 128 (207)
+++.|+.--...-..+..++...|.+|+ ...+|+.+|.+|+-.+..|++.|.+++-.+|+.+=.+.+-+.+
T Consensus 31 ~~~aq~~~~~a~~~ai~a~~~~~E~~l~----~Lq~e~~~l~e~~v~~~a~~~~~t~~~~~~en~~~r~~~eir~ 101 (459)
T KOG0288|consen 31 RLSAQLVILRAESRAIKAKLQEKELELN----RLQEENTQLNEERVREEATEKTLTVDVLIAENLRIRSLNEIRE 101 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333444444444444444 4445566666666666677777777777777766655554444
No 33
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=93.69 E-value=1.5 Score=43.77 Aligned_cols=22 Identities=23% Similarity=0.392 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhHH
Q 028596 92 ERLSKENEALTNTVRKLQRDVS 113 (207)
Q Consensus 92 ~kL~kE~~sLa~TVKkL~RDva 113 (207)
..|.++.+.+...+..+...+.
T Consensus 899 ~~l~~~~~~l~~~~~~~~~~~~ 920 (1164)
T TIGR02169 899 RELERKIEELEAQIEKKRKRLS 920 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 34
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=93.69 E-value=1.4 Score=40.16 Aligned_cols=77 Identities=19% Similarity=0.334 Sum_probs=44.1
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028596 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS----------DKLGQAQADKERLSKENEALTNTVRKLQ 109 (207)
Q Consensus 40 A~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~----------~rL~~a~ee~~kL~kE~~sLa~TVKkL~ 109 (207)
++...+..||.|...|.+.|.+=+..-.+|.+.+..|+.+.. .......-+...+.+|+++|.+++.-..
T Consensus 47 ~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~~q~~~~~ 126 (314)
T PF04111_consen 47 ELEEELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLKNQYEYAS 126 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666666555555555555555555544 1112222333455577777777777666
Q ss_pred hhHHHHH
Q 028596 110 RDVSKLE 116 (207)
Q Consensus 110 RDvaKLE 116 (207)
.++.+|+
T Consensus 127 ~~L~~L~ 133 (314)
T PF04111_consen 127 NQLDRLR 133 (314)
T ss_dssp HHHHCHH
T ss_pred HHHHHHH
Confidence 6666664
No 35
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=93.66 E-value=1.3 Score=32.67 Aligned_cols=60 Identities=25% Similarity=0.325 Sum_probs=37.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 47 DLESEHSALRSQLAEKDSRIAELQS--QIESIYSSLS-DKLGQAQADKERLSKENEALTNTVR 106 (207)
Q Consensus 47 ~LEsE~~~LR~~LaEKd~~i~eLq~--rvs~Le~~L~-~rL~~a~ee~~kL~kE~~sLa~TVK 106 (207)
.||+++..||..|.-=.+++...+. +.-..|+.-. .+|..+-+++.+|..|+..|....+
T Consensus 2 ~Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~ 64 (69)
T PF14197_consen 2 KLEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELE 64 (69)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5888888888888544443332222 2222233222 6777888888888888888876633
No 36
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=93.62 E-value=4.2 Score=34.87 Aligned_cols=77 Identities=18% Similarity=0.309 Sum_probs=54.1
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 028596 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS------DKLGQAQADKERLSKENEALTNTVRKLQRDVS 113 (207)
Q Consensus 40 A~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~------~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDva 113 (207)
.....|..+..|..+|+.-|..-...+.+|+.++...+..-. +|+....++...|.-|...|...+.++.++-.
T Consensus 45 ~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~Erd 124 (201)
T PF13851_consen 45 RNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERD 124 (201)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555667777777777777777777777777777766665433 67777777777777777777777777776655
Q ss_pred HHH
Q 028596 114 KLE 116 (207)
Q Consensus 114 KLE 116 (207)
-|.
T Consensus 125 eL~ 127 (201)
T PF13851_consen 125 ELY 127 (201)
T ss_pred HHH
Confidence 554
No 37
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=93.52 E-value=0.92 Score=45.78 Aligned_cols=40 Identities=33% Similarity=0.497 Sum_probs=34.7
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 37 TSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESI 76 (207)
Q Consensus 37 ts~A~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~L 76 (207)
..-+...|...||.|+.+||..|..|++.+..|+..+..|
T Consensus 539 ~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~l 578 (697)
T PF09726_consen 539 CAESCRQRRRQLESELKKLRRELKQKEEQIRELESELQEL 578 (697)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4446889999999999999999999999999998877433
No 38
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=93.44 E-value=1.7 Score=43.13 Aligned_cols=84 Identities=18% Similarity=0.356 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHHH------hhhhhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH---HHHHHHHHHHHH
Q 028596 30 LDVARKITSIAIST------RVSDLESEHSALRSQLAEKDSRI-------AELQSQIESIYSSLS---DKLGQAQADKER 93 (207)
Q Consensus 30 LdlArkIts~A~at------RVs~LEsE~~~LR~~LaEKd~~i-------~eLq~rvs~Le~~L~---~rL~~a~ee~~k 93 (207)
|.=||++..-+-+. -+.+|+.|+..||.++.++.... .+...+++.+++++. .|.+...++...
T Consensus 94 l~~ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~ 173 (546)
T KOG0977|consen 94 LATARKLLDETARERAKLEIEITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKR 173 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 33466666665443 36678888888888888875443 455667777887777 788888888888
Q ss_pred HHHHHHHHHHHHHHHhhhHH
Q 028596 94 LSKENEALTNTVRKLQRDVS 113 (207)
Q Consensus 94 L~kE~~sLa~TVKkL~RDva 113 (207)
|.+|+..|-..+..+..++.
T Consensus 174 Lk~en~rl~~~l~~~r~~ld 193 (546)
T KOG0977|consen 174 LKAENSRLREELARARKQLD 193 (546)
T ss_pred HHHHhhhhHHHHHHHHHHHH
Confidence 88888888777776665443
No 39
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=93.38 E-value=1.6 Score=37.61 Aligned_cols=53 Identities=23% Similarity=0.351 Sum_probs=32.0
Q ss_pred hHHHHHHHHHH------HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 29 QLDVARKITSI------AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (207)
Q Consensus 29 QLdlArkIts~------A~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~ 81 (207)
||.-|..+..- .+..|+..+|.++.+.-.++..-...|.+|+.++..+...|.
T Consensus 100 ~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk 158 (237)
T PF00261_consen 100 QLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLK 158 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHH
Confidence 55555555554 345666666666666666666666666666666666555554
No 40
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=93.35 E-value=2.7 Score=34.31 Aligned_cols=41 Identities=24% Similarity=0.460 Sum_probs=18.7
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (207)
Q Consensus 41 ~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~ 81 (207)
+..++..++++...++.....-.......++++..++..+.
T Consensus 100 l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~ 140 (191)
T PF04156_consen 100 LQERIQELESELEKLKEDLQELRELLKSVEERLDSLDESIK 140 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444433444444444444444443
No 41
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=93.32 E-value=3.9 Score=33.59 Aligned_cols=50 Identities=16% Similarity=0.315 Sum_probs=22.7
Q ss_pred CchhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 25 DPFEQLDVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYS 78 (207)
Q Consensus 25 DP~EQLdlArkIts~A~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~ 78 (207)
--|||| +|-...|..++..=..|+.+||.....--+.+...++++..+..
T Consensus 42 iDFeqL----kien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~ 91 (177)
T PF13870_consen 42 IDFEQL----KIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSE 91 (177)
T ss_pred HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346776 33444444444444444444444444444444444444333333
No 42
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=93.02 E-value=1.1 Score=38.61 Aligned_cols=61 Identities=30% Similarity=0.431 Sum_probs=39.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 46 SDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS-------DKLGQAQADKERLSKENEALTNTVR 106 (207)
Q Consensus 46 s~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~-------~rL~~a~ee~~kL~kE~~sLa~TVK 106 (207)
..|..++..+..++.+++..|..|+.++.-....++ .|...+..++..|..|...|-+.++
T Consensus 121 eeL~~kL~~~~~~l~~~~~ki~~Lek~leL~~k~~~rql~~e~kK~~~~~~~~~~l~~ei~~L~~klk 188 (194)
T PF15619_consen 121 EELQRKLSQLEQKLQEKEKKIQELEKQLELENKSFRRQLASEKKKHKEAQEEVKSLQEEIQRLNQKLK 188 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777788888888888888888888877777766 3334444444444444444444443
No 43
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=92.94 E-value=2.7 Score=38.05 Aligned_cols=24 Identities=17% Similarity=0.394 Sum_probs=9.2
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHhh
Q 028596 102 TNTVRKLQRDVSKLEVFRKTLVQS 125 (207)
Q Consensus 102 a~TVKkL~RDvaKLE~FKk~LmqS 125 (207)
...+..|+..+..++.=|..+...
T Consensus 236 ~~el~~l~~~i~~~~~~k~~l~~e 259 (325)
T PF08317_consen 236 QEELEELEEKIEELEEQKQELLAE 259 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333334333333
No 44
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=92.93 E-value=2.2 Score=37.40 Aligned_cols=75 Identities=27% Similarity=0.403 Sum_probs=56.1
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 028596 43 TRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEV 117 (207)
Q Consensus 43 tRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~---~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDvaKLE~ 117 (207)
.|-.+||++..-+...+++-+.....|+.-+.-...+=+ ++-..+.++...|..|+...-.++.+|+|.|.-|+.
T Consensus 105 irR~~LeAQka~~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq~ 182 (192)
T PF11180_consen 105 IRRAQLEAQKAQLERLIAESEARANRLQADLQIARQQQQQVAARQQQARQEAQALEAERRAAQAQLRQLQRQVRQLQR 182 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777777777666666666666655443333222 788889999999999999999999999999988874
No 45
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=92.80 E-value=2.9 Score=38.34 Aligned_cols=84 Identities=27% Similarity=0.410 Sum_probs=52.9
Q ss_pred hHHHHHHHHHHHHHH-------hhh---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 29 QLDVARKITSIAIST-------RVS---DLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKEN 98 (207)
Q Consensus 29 QLdlArkIts~A~at-------RVs---~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~ 98 (207)
-++|.||=..||+.. ||- .|-.....+|.+|.|-...-.+|.++...|+..+- ..+++...|..||
T Consensus 104 D~elvrkEl~nAlvRAGLktL~~v~~~~d~ke~~ee~kekl~E~~~EkeeL~~eleele~e~e----e~~erlk~le~E~ 179 (290)
T COG4026 104 DVELVRKELKNALVRAGLKTLQRVPEYMDLKEDYEELKEKLEELQKEKEELLKELEELEAEYE----EVQERLKRLEVEN 179 (290)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 357788888887642 221 33344556677777666666777777778887776 5555555566666
Q ss_pred HHHHHHHHHHhhhHHHHH
Q 028596 99 EALTNTVRKLQRDVSKLE 116 (207)
Q Consensus 99 ~sLa~TVKkL~RDvaKLE 116 (207)
+.|..-.|+|-..|.+|+
T Consensus 180 s~LeE~~~~l~~ev~~L~ 197 (290)
T COG4026 180 SRLEEMLKKLPGEVYDLK 197 (290)
T ss_pred HHHHHHHHhchhHHHHHH
Confidence 666666666665555554
No 46
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=92.73 E-value=1.4 Score=39.26 Aligned_cols=84 Identities=23% Similarity=0.328 Sum_probs=62.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------------------------------------------
Q 028596 46 SDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS-------------------------------------------- 81 (207)
Q Consensus 46 s~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~-------------------------------------------- 81 (207)
..|+.++..|.+++.+-...|..|+.-+..++....
T Consensus 2 ~~lq~~l~~l~~~~~~~~~L~~kLE~DL~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~~sp~ss~~~~~~~~siL 81 (248)
T PF08172_consen 2 EELQKELSELEAKLEEQKELNAKLENDLAKVQASSSASRSFNDGASMASGATRQIPNSGRSGSLSPTSSIIGGGGDSSIL 81 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCcccccccchhhccCccccCCCCCCccCCCCCCcccHH
Confidence 468899999999999999999999999998885411
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH------HHHHHhhcccc
Q 028596 82 ----DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVF------RKTLVQSLKDD 129 (207)
Q Consensus 82 ----~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDvaKLE~F------Kk~LmqSLq~D 129 (207)
+.=-.-.++|..|.+|...+.+++.+|.++|++|++= |=--|||.+..
T Consensus 82 pIVtsQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEKiRylqSY~~~ 139 (248)
T PF08172_consen 82 PIVTSQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEKIRYLQSYNNK 139 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccc
Confidence 0001224677888888888888888888888887652 34467888764
No 47
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=92.59 E-value=2.4 Score=31.60 Aligned_cols=35 Identities=20% Similarity=0.402 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 028596 82 DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLE 116 (207)
Q Consensus 82 ~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDvaKLE 116 (207)
..+....++++.|....++|...|..|+..|.+|.
T Consensus 35 ~~~~~t~~~~a~L~~qv~~Ls~qv~~Ls~ql~rLs 69 (70)
T PF04899_consen 35 HMFEQTSQENAALSEQVNNLSQQVQRLSEQLERLS 69 (70)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34448888888999999999999999999998874
No 48
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=92.59 E-value=3.1 Score=33.57 Aligned_cols=20 Identities=25% Similarity=0.448 Sum_probs=10.4
Q ss_pred HHHHhhhHHHHHHHHHHHHh
Q 028596 105 VRKLQRDVSKLEVFRKTLVQ 124 (207)
Q Consensus 105 VKkL~RDvaKLE~FKk~Lmq 124 (207)
|--|.-||.-|+.+=|..++
T Consensus 98 veEL~~Dv~DlK~myr~Qi~ 117 (120)
T PF12325_consen 98 VEELRADVQDLKEMYREQID 117 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44455555555555554444
No 49
>KOG2685 consensus Cystoskeletal protein Tektin [Cytoskeleton]
Probab=92.57 E-value=6.1 Score=38.36 Aligned_cols=97 Identities=25% Similarity=0.332 Sum_probs=78.2
Q ss_pred hhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHH-----------
Q 028596 28 EQLDVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS-----DKLGQAQADK----------- 91 (207)
Q Consensus 28 EQLdlArkIts~A~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~-----~rL~~a~ee~----------- 91 (207)
.||..=.-.+..||..|+...+.=-.+|.-+++.+.++|++.+..|..++.++. -|+.+.+-++
T Consensus 263 n~lr~Q~~~ve~af~~ri~etqdar~kL~~ql~k~leEi~~~e~~I~~le~airdK~~pLKVAqTRle~Rt~RPnvELCr 342 (421)
T KOG2685|consen 263 NDLRTQADAVELAFKKRIRETQDARNKLEWQLAKTLEEIADAENNIEALERAIRDKEGPLKVAQTRLENRTYRPNVELCR 342 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcccccHHHHHHHHHHcccCCchHHHH
Confidence 344444445667999999999999999999999999999999999999999998 4444444333
Q ss_pred ----HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Q 028596 92 ----ERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQ 124 (207)
Q Consensus 92 ----~kL~kE~~sLa~TVKkL~RDvaKLE~FKk~Lmq 124 (207)
-.|-.|--.|-.|+..|.-.+++=|.=++.|..
T Consensus 343 D~AQ~~L~~EV~~l~~t~~~L~~kL~eA~~~l~~L~~ 379 (421)
T KOG2685|consen 343 DQAQYRLVDEVHELDDTVAALKEKLDEAEDSLKLLVN 379 (421)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578888888888888888888887777776665
No 50
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=92.36 E-value=0.86 Score=37.15 Aligned_cols=33 Identities=30% Similarity=0.468 Sum_probs=14.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 48 LESEHSALRSQLAEKDSRIAELQSQIESIYSSL 80 (207)
Q Consensus 48 LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L 80 (207)
|..++..|+.++.+-...+..|+..+..|...+
T Consensus 77 ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~ 109 (169)
T PF07106_consen 77 LDAEIKELREELAELKKEVKSLEAELASLSSEP 109 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 333444444444444444444444444444333
No 51
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=92.35 E-value=5.8 Score=39.55 Aligned_cols=90 Identities=18% Similarity=0.283 Sum_probs=43.8
Q ss_pred HHHhhCCCCchhhHHHHHHH--------HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Q 028596 17 EVLQVLPSDPFEQLDVARKI--------TSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS------- 81 (207)
Q Consensus 17 eilsvLP~DP~EQLdlArkI--------ts~A~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~------- 81 (207)
++|-|.|..-+-|-.|-..- ....+...+..|+.++.+|...|.........|+.+...+.....
T Consensus 130 DmLvV~~ka~~lQ~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~ 209 (546)
T PF07888_consen 130 DMLVVTTKAQLLQNQLEECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERE 209 (546)
T ss_pred ceEEEehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777777544443332210 112455555555555666666665555555555555444443333
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 82 ---DKLGQAQADKERLSKENEALTNTVR 106 (207)
Q Consensus 82 ---~rL~~a~ee~~kL~kE~~sLa~TVK 106 (207)
.++..+.+++.+|..+...|....+
T Consensus 210 ~L~~q~~e~~~ri~~LEedi~~l~qk~~ 237 (546)
T PF07888_consen 210 SLKEQLAEARQRIRELEEDIKTLTQKEK 237 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2333344444455544444444443
No 52
>PRK02224 chromosome segregation protein; Provisional
Probab=92.35 E-value=3.4 Score=41.05 Aligned_cols=12 Identities=8% Similarity=-0.006 Sum_probs=6.8
Q ss_pred CchhhHHHHHHH
Q 028596 25 DPFEQLDVARKI 36 (207)
Q Consensus 25 DP~EQLdlArkI 36 (207)
+-||+++-..+=
T Consensus 162 ~~~e~~~~~~~~ 173 (880)
T PRK02224 162 GKLEEYRERASD 173 (880)
T ss_pred HHHHHHHHHHHH
Confidence 666666554433
No 53
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=92.29 E-value=2 Score=39.13 Aligned_cols=90 Identities=20% Similarity=0.281 Sum_probs=57.1
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH--------HHHHHHHHHHH----------
Q 028596 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQA--------QADKERLSKEN---------- 98 (207)
Q Consensus 40 A~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~---~rL~~a--------~ee~~kL~kE~---------- 98 (207)
.+.++...+|.+...|+....++.-.+..++.++..++..+. .++... ......|...-
T Consensus 258 ~l~~~l~~le~~l~~l~~~y~~~hP~v~~l~~~i~~l~~~l~~e~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l 337 (444)
T TIGR03017 258 NLKTDIARAESKLAELSQRLGPNHPQYKRAQAEINSLKSQLNAEIKKVTSSVGTNSRILKQREAELREALENQKAKVLEL 337 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888888899888888888888888888888888888775 122111 11111121111
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhcccc
Q 028596 99 EALTNTVRKLQRDVSKLEVFRKTLVQSLKDD 129 (207)
Q Consensus 99 ~sLa~TVKkL~RDvaKLE~FKk~LmqSLq~D 129 (207)
.........|.||+.--+..=..|++.+++-
T Consensus 338 ~~~~~~~~~L~r~~~~~~~~y~~ll~r~~e~ 368 (444)
T TIGR03017 338 NRQRDEMSVLQRDVENAQRAYDAAMQRYTQT 368 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1122345567777777777777777777654
No 54
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=92.20 E-value=3 Score=38.30 Aligned_cols=30 Identities=13% Similarity=0.118 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 52 HSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (207)
Q Consensus 52 ~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~ 81 (207)
...+|.+|++=+..|...+.++..++.+++
T Consensus 206 L~~lk~~l~~~~~ei~~~~~~l~e~~~~l~ 235 (312)
T smart00787 206 LDRAKEKLKKLLQEIMIKVKKLEELEEELQ 235 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444
No 55
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=92.12 E-value=2.3 Score=47.70 Aligned_cols=90 Identities=23% Similarity=0.341 Sum_probs=79.0
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 38 SIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS-----------DKLGQAQADKERLSKENEALTNTVR 106 (207)
Q Consensus 38 s~A~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~-----------~rL~~a~ee~~kL~kE~~sLa~TVK 106 (207)
..+++....+|+.|+..||.++.|=...+.+|+.+++.+..+++ .++....+.+.+|++.-..+...+.
T Consensus 1317 k~~l~~~l~~l~~e~~~l~e~leee~e~~~~l~r~lsk~~~e~~~~~~k~e~~~~~~~eelee~kk~l~~~lq~~qe~~e 1396 (1930)
T KOG0161|consen 1317 KSALENALRQLEHELDLLREQLEEEQEAKNELERKLSKANAELAQWKKKFEEEVLQRLEELEELKKKLQQRLQELEEQIE 1396 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 34899999999999999999999999999999999999988887 3356677777888888889999999
Q ss_pred HHhhhHHHHHHHHHHHHhhcc
Q 028596 107 KLQRDVSKLEVFRKTLVQSLK 127 (207)
Q Consensus 107 kL~RDvaKLE~FKk~LmqSLq 127 (207)
-++.-.++||.-|..|+|-+.
T Consensus 1397 ~~~~~~~~Lek~k~~l~~el~ 1417 (1930)
T KOG0161|consen 1397 AANAKNASLEKAKNRLQQELE 1417 (1930)
T ss_pred HHHHHHHHHHHHHHHHHhHHH
Confidence 999999999999999988554
No 56
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=92.07 E-value=7.7 Score=33.86 Aligned_cols=72 Identities=21% Similarity=0.277 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 028596 51 EHSALRSQLAEKDSRIAELQSQIESIYSSLS-------DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTL 122 (207)
Q Consensus 51 E~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~-------~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDvaKLE~FKk~L 122 (207)
|+..+|.++..-...+..|+.+...|+..+. ..+.........|..|...|-..+....++...|-..|-.|
T Consensus 217 E~~~~r~~~~~l~~el~~l~~~~~~Le~~l~~le~~~~~~~~~~~~~i~~le~el~~l~~~~~~~~~ey~~Ll~~K~~L 295 (312)
T PF00038_consen 217 ELKELRRQIQSLQAELESLRAKNASLERQLRELEQRLDEEREEYQAEIAELEEELAELREEMARQLREYQELLDVKLAL 295 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHhhhhhhccccchhhhhhhHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3444455544444444444444444444443 33333444555566666666666666666666666555444
No 57
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=91.96 E-value=2.1 Score=41.36 Aligned_cols=66 Identities=21% Similarity=0.385 Sum_probs=32.3
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 43 TRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKL 108 (207)
Q Consensus 43 tRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~---~rL~~a~ee~~kL~kE~~sLa~TVKkL 108 (207)
.|..+...|++.+...+.+....-..|++.+..++.++. ..|.++..+..++.+..+.+...+.+|
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l 106 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNAL 106 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHH
Confidence 455566666666666666555555555555555554444 223333333444444433333333333
No 58
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=91.74 E-value=1 Score=48.77 Aligned_cols=77 Identities=25% Similarity=0.375 Sum_probs=50.8
Q ss_pred HHHHhhhhhHHHHHHHHHHHH----------HHH-------HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Q 028596 40 AISTRVSDLESEHSALRSQLA----------EKD-------SRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENE 99 (207)
Q Consensus 40 A~atRVs~LEsE~~~LR~~La----------EKd-------~~i~eLq~rvs~Le~~L~---~rL~~a~ee~~kL~kE~~ 99 (207)
||.+++..||..+...|..|. +-+ +.|.++.+++..+|..|. .-+..+..+..-|++|.+
T Consensus 1198 ay~s~f~~me~kl~~ir~il~~~svs~~~i~~l~~~~~~lr~~l~~~~e~L~~~E~~Lsdi~~~~~~a~~~LesLq~~~~ 1277 (1758)
T KOG0994|consen 1198 AYASRFLDMEEKLEEIRAILSAPSVSAEDIAQLASATESLRRQLQALTEDLPQEEETLSDITNSLPLAGKDLESLQREFN 1277 (1758)
T ss_pred hhHhHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhccchhhhhHHHHHHHHH
Confidence 889999999988888887772 112 222233333333333333 233345566678999999
Q ss_pred HHHHHHHHHhhhHHHHH
Q 028596 100 ALTNTVRKLQRDVSKLE 116 (207)
Q Consensus 100 sLa~TVKkL~RDvaKLE 116 (207)
.|-+|+|.|...+.||+
T Consensus 1278 ~l~~~~keL~e~~~~ik 1294 (1758)
T KOG0994|consen 1278 GLLTTYKELREQLEKIK 1294 (1758)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 99999999999888865
No 59
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=91.53 E-value=5.2 Score=34.38 Aligned_cols=99 Identities=24% Similarity=0.324 Sum_probs=56.8
Q ss_pred ChHHHHhhCCCCchhhHHHHHHHHHH---------HHHHhhh----------hhHHHHHHHHHHHHHH-------HHHHH
Q 028596 14 LPEEVLQVLPSDPFEQLDVARKITSI---------AISTRVS----------DLESEHSALRSQLAEK-------DSRIA 67 (207)
Q Consensus 14 Lp~eilsvLP~DP~EQLdlArkIts~---------A~atRVs----------~LEsE~~~LR~~LaEK-------d~~i~ 67 (207)
|-++|...==+||-..|+.=.+..+. ++..|+. ++-.+..++-.++.++ +.+|.
T Consensus 55 l~e~v~~l~idd~~~~f~~~~~tl~~LE~~GFnV~~l~~RL~kLL~lk~~~~~~~e~~k~le~~~~~~~~~~~~~e~~i~ 134 (190)
T PF05266_consen 55 LAEKVKKLQIDDSRSSFESLMKTLSELEEHGFNVKFLRSRLNKLLSLKDDQEKLLEERKKLEKKIEEKEAELKELESEIK 134 (190)
T ss_pred HHHHHHHcccCCcHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 34455555556666666655554443 3444444 3344556666666666 77777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 028596 68 ELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLE 116 (207)
Q Consensus 68 eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDvaKLE 116 (207)
+|+.++..|+.+.+ .....+..-.+|...|..-+.+++.++...|
T Consensus 135 ~Le~ki~el~~~~~----~~~~~ke~~~~ei~~lks~~~~l~~~~~~~e 179 (190)
T PF05266_consen 135 ELEMKILELQRQAA----KLKEKKEAKDKEISRLKSEAEALKEEIENAE 179 (190)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777776665 2333333334666666666666666666554
No 60
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=91.41 E-value=2.2 Score=41.82 Aligned_cols=70 Identities=21% Similarity=0.298 Sum_probs=36.4
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHhh
Q 028596 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLG----QAQADKERLSKENEALTNTVRKLQR 110 (207)
Q Consensus 41 ~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~~rL~----~a~ee~~kL~kE~~sLa~TVKkL~R 110 (207)
+..++..++.|+..|..+=..=..+...|++|-..++..++.++. +..++..+|++|+..|...+-.|++
T Consensus 64 lva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~~ 137 (472)
T TIGR03752 64 LVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQLQR 137 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555554444433334555777777777777773332 3334445555555555555444444
No 61
>KOG3433 consensus Protein involved in meiotic recombination/predicted coiled-coil protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=91.38 E-value=1.8 Score=38.25 Aligned_cols=74 Identities=14% Similarity=0.223 Sum_probs=56.1
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 028596 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFR 119 (207)
Q Consensus 40 A~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDvaKLE~FK 119 (207)
+.+++...||+++.+++++.+...+-|+-.+ .-. ....++++.|.++.++|....+-|.-+++|++-=+
T Consensus 78 ~~ks~~qeLe~~L~~~~qk~~tl~e~~en~K-------~~~----e~tEer~~el~kklnslkk~~e~lr~el~k~~e~d 146 (203)
T KOG3433|consen 78 DRKSVLQELESQLATGSQKKATLGESIENRK-------AGR----EETEERTDELTKKLNSLKKILESLRWELAKIQETD 146 (203)
T ss_pred HHHHHHHHHHHHHHHhhhhHhHHHHHHHHHH-------hhh----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 6788899999999999999888777655443 112 24566667999999999999999999999987544
Q ss_pred HHHHh
Q 028596 120 KTLVQ 124 (207)
Q Consensus 120 k~Lmq 124 (207)
-++..
T Consensus 147 pqv~~ 151 (203)
T KOG3433|consen 147 PQVFE 151 (203)
T ss_pred HHHHH
Confidence 44433
No 62
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=91.37 E-value=7.3 Score=39.04 Aligned_cols=41 Identities=17% Similarity=0.348 Sum_probs=21.6
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (207)
Q Consensus 41 ~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~ 81 (207)
|..|+..|-.++..|+.....=-++|.+|+..+..|..++.
T Consensus 27 ~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~ 67 (617)
T PF15070_consen 27 WQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMA 67 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45555555555555555544444555555555555544443
No 63
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=91.28 E-value=7 Score=35.36 Aligned_cols=42 Identities=17% Similarity=0.327 Sum_probs=19.8
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Q 028596 40 AISTRVSDLESEHSALRSQLAEK----DSRIAELQSQIESIYSSLS 81 (207)
Q Consensus 40 A~atRVs~LEsE~~~LR~~LaEK----d~~i~eLq~rvs~Le~~L~ 81 (207)
.+..|-..|+.|+..||+...|= ...+..++.++..++..+.
T Consensus 181 ~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~~i~ 226 (325)
T PF08317_consen 181 KLRERKAELEEELENLKQLVEEIESCDQEELEALRQELAEQKEEIE 226 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHH
Confidence 44555556666655555544421 1233444444444444443
No 64
>KOG4010 consensus Coiled-coil protein TPD52 [General function prediction only]
Probab=91.20 E-value=0.39 Score=42.39 Aligned_cols=34 Identities=32% Similarity=0.495 Sum_probs=32.0
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQI 73 (207)
Q Consensus 40 A~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rv 73 (207)
-+.+...++|.||..||+-|+-|++|..+|.+|+
T Consensus 48 elr~EL~kvEeEI~TLrqVLaAKerH~~ELKRKL 81 (208)
T KOG4010|consen 48 ELRTELAKVEEEIVTLRQVLAAKERHAAELKRKL 81 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6788999999999999999999999999999886
No 65
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=91.13 E-value=7.7 Score=38.02 Aligned_cols=68 Identities=22% Similarity=0.259 Sum_probs=42.5
Q ss_pred ChHHHHhhCCCCchhhHHHHHHH---------HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 14 LPEEVLQVLPSDPFEQLDVARKI---------TSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (207)
Q Consensus 14 Lp~eilsvLP~DP~EQLdlArkI---------ts~A~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~ 81 (207)
|-+.+-.+|==+++++|.-=-.+ ....+..++..||.++..+..++.+..+.+..++.++..++..+.
T Consensus 171 l~~Ai~~LlGl~~~~~L~~dl~~~~~~~~~~~~~~~~~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~ 247 (650)
T TIGR03185 171 LKEAIEVLLGLDLIDRLAGDLTNVLRRRKKSELPSSILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLE 247 (650)
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666777777421111 112555677777777777777777777777777666666666655
No 66
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=91.05 E-value=11 Score=33.48 Aligned_cols=41 Identities=20% Similarity=0.334 Sum_probs=22.9
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSL 80 (207)
Q Consensus 40 A~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L 80 (207)
.+..++..++.++..++.++..-.+.+..++.++..++..+
T Consensus 141 ~~~~~~~~l~~~i~~~~~~i~~~~~~l~~~~~~l~~~~~~~ 181 (423)
T TIGR01843 141 TLRAQLELILAQIKQLEAELAGLQAQLQALRQQLEVISEEL 181 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666666666666666555555555555544444433
No 67
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=91.01 E-value=3.6 Score=42.32 Aligned_cols=58 Identities=22% Similarity=0.359 Sum_probs=42.0
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Q 028596 35 KITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKER 93 (207)
Q Consensus 35 kIts~A~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~---~rL~~a~ee~~k 93 (207)
|++--|+++-- +-|+|+..|+++|..--..-..+++|++.|+.+|. -.|+.+++++.+
T Consensus 10 kvaeeav~gwe-kae~e~~~lk~~l~~~~~~~~~~e~r~~hld~aLkec~~qlr~~ree~eq 70 (769)
T PF05911_consen 10 KVAEEAVSGWE-KAEAEAASLKQQLEAATQQKLALEDRVSHLDGALKECMRQLRQVREEQEQ 70 (769)
T ss_pred HHHHHHHhhHH-HHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHhhHHHHH
Confidence 45555665443 56788888888888888888888888888888887 666666666643
No 68
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=90.98 E-value=5.8 Score=36.43 Aligned_cols=77 Identities=16% Similarity=0.263 Sum_probs=34.3
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 028596 40 AISTRVSDLESEHSALRSQLAEKD----SRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKL 115 (207)
Q Consensus 40 A~atRVs~LEsE~~~LR~~LaEKd----~~i~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDvaKL 115 (207)
.+..|...|+.|+..||+.-.|-+ .....+++++..+..++. ...++-..+..++..|+.++...
T Consensus 176 ~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~-----------~~~~~l~e~~~~l~~l~~~I~~~ 244 (312)
T smart00787 176 KLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIM-----------IKVKKLEELEEELQELESKIEDL 244 (312)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555432 244444444444444443 33333333344444444444444
Q ss_pred HHHHHHHHhhcc
Q 028596 116 EVFRKTLVQSLK 127 (207)
Q Consensus 116 E~FKk~LmqSLq 127 (207)
..-|..+...++
T Consensus 245 ~~~k~e~~~~I~ 256 (312)
T smart00787 245 TNKKSELNTEIA 256 (312)
T ss_pred HHHHHHHHHHHH
Confidence 444444444443
No 69
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=90.94 E-value=9 Score=32.48 Aligned_cols=85 Identities=24% Similarity=0.306 Sum_probs=48.1
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 028596 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLE 116 (207)
Q Consensus 40 A~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~---~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDvaKLE 116 (207)
....|+..|..++..+|..+.++.+.+.++++.+......+. ...........++..+...+...+..+.+.+..-.
T Consensus 67 ~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~r 146 (302)
T PF10186_consen 67 ELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLSASQDLVESRQEQLEELQNELEERKQRLSQLQSQLARRR 146 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 557778888888888888888877777777766666665554 22222222333344444444444444555555444
Q ss_pred HHHHHHHh
Q 028596 117 VFRKTLVQ 124 (207)
Q Consensus 117 ~FKk~Lmq 124 (207)
...-..+.
T Consensus 147 ~~l~~~l~ 154 (302)
T PF10186_consen 147 RQLIQELS 154 (302)
T ss_pred HHHHHHHH
Confidence 44433333
No 70
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=90.94 E-value=5 Score=34.14 Aligned_cols=30 Identities=23% Similarity=0.436 Sum_probs=16.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 47 DLESEHSALRSQLAEKDSRIAELQSQIESI 76 (207)
Q Consensus 47 ~LEsE~~~LR~~LaEKd~~i~eLq~rvs~L 76 (207)
.++..+..|+.++.+....|.+|++++..+
T Consensus 66 ~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~ 95 (188)
T PF03962_consen 66 KRQNKLEKLQKEIEELEKKIEELEEKIEEA 95 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555566665555544
No 71
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=90.93 E-value=6 Score=33.96 Aligned_cols=85 Identities=21% Similarity=0.302 Sum_probs=61.2
Q ss_pred HHHHhhhhhHHHHHHHHHHHH--HHHHHH-HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 028596 40 AISTRVSDLESEHSALRSQLA--EKDSRI-AELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVS 113 (207)
Q Consensus 40 A~atRVs~LEsE~~~LR~~La--EKd~~i-~eLq~rvs~Le~~L~---~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDva 113 (207)
-+.--+..++.|+..||.+|. +||... ..++.|+..++..|. ---....++..+|..|++.|-.+....-.||.
T Consensus 59 ~L~epL~~a~~e~~eL~k~L~~y~kdK~~L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evq 138 (201)
T PF13851_consen 59 RLSEPLKKAEEEVEELRKQLKNYEKDKQSLQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQ 138 (201)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556778889999999888 555543 344555555555555 22236778889999999999999988888888
Q ss_pred HHHHHHHHHHh
Q 028596 114 KLEVFRKTLVQ 124 (207)
Q Consensus 114 KLE~FKk~Lmq 124 (207)
.==.||-.|++
T Consensus 139 Qk~~~kn~lLE 149 (201)
T PF13851_consen 139 QKTGLKNLLLE 149 (201)
T ss_pred HHHHHHHHHHH
Confidence 77777766654
No 72
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=90.82 E-value=11 Score=37.28 Aligned_cols=85 Identities=27% Similarity=0.382 Sum_probs=56.1
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHH------------------------HHHHHHHHHHHHHHHHHH-------HHHHHH
Q 028596 37 TSIAISTRVSDLESEHSALRSQLAE------------------------KDSRIAELQSQIESIYSS-------LSDKLG 85 (207)
Q Consensus 37 ts~A~atRVs~LEsE~~~LR~~LaE------------------------Kd~~i~eLq~rvs~Le~~-------L~~rL~ 85 (207)
..|-+-.||.+||.|-+-|-.+|.+ --.||.-|+..|..|-.. ++.++.
T Consensus 202 lvN~LwKrmdkLe~ekr~Lq~KlDqpvs~p~~prdia~~~~~~gD~a~~~~~hi~~l~~EveRlrt~l~~Aqk~~~ek~~ 281 (552)
T KOG2129|consen 202 LVNSLWKRMDKLEQEKRYLQKKLDQPVSTPSLPRDIAKIPDVHGDEAAAEKLHIDKLQAEVERLRTYLSRAQKSYQEKLM 281 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcccCCCchhhhhcCccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778999999999988887732 113444455555444444 445555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Q 028596 86 QAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQ 124 (207)
Q Consensus 86 ~a~ee~~kL~kE~~sLa~TVKkL~RDvaKLE~FKk~Lmq 124 (207)
+-.++.....+||..| -+||.+.|.|=|++-|+|-.
T Consensus 282 qy~~Ee~~~reen~rl---QrkL~~e~erRealcr~lsE 317 (552)
T KOG2129|consen 282 QYRAEEVDHREENERL---QRKLINELERREALCRMLSE 317 (552)
T ss_pred HHHHHHhhHHHHHHHH---HHHHHHHHHHHHHHHHHhhh
Confidence 5555555555555555 47889999999999888865
No 73
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=90.74 E-value=8 Score=42.45 Aligned_cols=111 Identities=20% Similarity=0.257 Sum_probs=73.9
Q ss_pred ChHHHHh-hCCCCchhhHHHHHHHHHH---------------HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 14 LPEEVLQ-VLPSDPFEQLDVARKITSI---------------AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIY 77 (207)
Q Consensus 14 Lp~eils-vLP~DP~EQLdlArkIts~---------------A~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le 77 (207)
+.++||. +||.+|.+=..|+-+|... +=..|+..|++|+.+-|.....-.....+.++-+...+
T Consensus 1497 vA~~vL~l~lp~tpeqi~~L~~~I~e~v~sL~nVd~IL~~T~~di~ra~~L~s~A~~a~~~A~~v~~~ae~V~eaL~~Ad 1576 (1758)
T KOG0994|consen 1497 VAEEVLALELPLTPEQIQQLTGEIQERVASLPNVDAILSRTKGDIARAENLQSEAERARSRAEDVKGQAEDVVEALEEAD 1576 (1758)
T ss_pred HHHHHHhccCCCCHHHHHHHHHHHHHHHHhcccHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 4455554 6999999888888777654 33578999999999988877755555555555555555
Q ss_pred HHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH----HHHHHHHh
Q 028596 78 SSLS----------DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLE----VFRKTLVQ 124 (207)
Q Consensus 78 ~~L~----------~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDvaKLE----~FKk~Lmq 124 (207)
.+.. .-+..+.+...|.++|-..-..++..-+..|++|| .+|...||
T Consensus 1577 ~Aq~~a~~ai~~a~~~~~~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~~~~e~lk~~~~q 1637 (1758)
T KOG0994|consen 1577 VAQGEAQDAIQGADRDIRLAQQLLAKVQEETAAAEKLATSATQQLGELETRMEELKHKAAQ 1637 (1758)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5544 34556666777777777766666666666666654 45555554
No 74
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=90.74 E-value=4.4 Score=35.92 Aligned_cols=42 Identities=14% Similarity=0.130 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cccccCCC
Q 028596 92 ERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQS-LKDDEDAS 133 (207)
Q Consensus 92 ~kL~kE~~sLa~TVKkL~RDvaKLE~FKk~LmqS-Lq~D~~~~ 133 (207)
.++..|++...+.+.+|..++.+|+.+=-.+..+ |+.+.-+.
T Consensus 70 kqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e~lgl~~Lp~ 112 (230)
T PF10146_consen 70 KQAESERNKRQEKIQRLYEEYKPLKDEINELRKEYLGLEPLPS 112 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCc
Confidence 3446677778888888899999999888888888 77665443
No 75
>PF10224 DUF2205: Predicted coiled-coil protein (DUF2205); InterPro: IPR019357 This entry represents a highly conserved 100 residue region which is likely to have a coiled-coil structure. The exact function is unknown.
Probab=90.70 E-value=1.5 Score=33.52 Aligned_cols=43 Identities=28% Similarity=0.443 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028596 69 LQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRD 111 (207)
Q Consensus 69 Lq~rvs~Le~~L~---~rL~~a~ee~~kL~kE~~sLa~TVKkL~RD 111 (207)
|..++-.|+..|. +|.....+++.||..||.-|..-|..|.+.
T Consensus 21 Li~ei~~LQ~sL~~L~~Rve~Vk~E~~kL~~EN~~Lq~YI~nLm~~ 66 (80)
T PF10224_consen 21 LIQEILELQDSLEALSDRVEEVKEENEKLESENEYLQQYIGNLMSS 66 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3345556666666 888899999999999999999999988664
No 76
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=90.66 E-value=3.3 Score=38.50 Aligned_cols=41 Identities=20% Similarity=0.343 Sum_probs=27.7
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSL 80 (207)
Q Consensus 40 A~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L 80 (207)
.+..++..||.+...|+....++.-.+.+|++++..++..+
T Consensus 251 ~l~~~l~~l~~~l~~l~~~y~~~hP~v~~l~~qi~~l~~~l 291 (498)
T TIGR03007 251 ELDGRIEALEKQLDALRLRYTDKHPDVIATKREIAQLEEQK 291 (498)
T ss_pred chHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHHHHHHHH
Confidence 44566777777777777766666666666666666666654
No 77
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=90.63 E-value=11 Score=33.11 Aligned_cols=83 Identities=14% Similarity=0.257 Sum_probs=46.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H-----------HHHHHHHHHHHHHHHHHHHHHH----HHHH
Q 028596 48 LESEHSALRSQLAEKDSRIAELQSQIESIYSSLS----D-----------KLGQAQADKERLSKENEALTNT----VRKL 108 (207)
Q Consensus 48 LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~----~-----------rL~~a~ee~~kL~kE~~sLa~T----VKkL 108 (207)
+..++..+...++..+..+..+++++..+...++ + +-+.+.+.....+.+.+.+.++ ...|
T Consensus 133 ~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~E~~g~~~tg~~G~Gp~~~~~~~~~~~~~~~l~~l~~~~~~~~~~l 212 (301)
T PF14362_consen 133 FDAQIARLDAEIAALQAEIDQLEKEIDRAQQEAQCEIFGTGGTGVPGKGPRYKEKRAQLDAAQAELDTLQAQIDAAIAAL 212 (301)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 4456666666666666666666666666666665 1 2344444444444444444444 4444
Q ss_pred h----hhHHHHHHHHHHHHhhccccc
Q 028596 109 Q----RDVSKLEVFRKTLVQSLKDDE 130 (207)
Q Consensus 109 ~----RDvaKLE~FKk~LmqSLq~D~ 130 (207)
+ ...+.|...+.......+.+.
T Consensus 213 ~~~~~~~~~~l~~~~~~~~a~~~~~~ 238 (301)
T PF14362_consen 213 DAQIAARKARLDEARQAKVAEFQAII 238 (301)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHhHhh
Confidence 4 555666666666666555544
No 78
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=90.51 E-value=11 Score=32.67 Aligned_cols=40 Identities=15% Similarity=0.292 Sum_probs=19.0
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 42 STRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (207)
Q Consensus 42 atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~ 81 (207)
-.|+.++..|...|.+.+..-.+.+..|+.....++..+.
T Consensus 41 Q~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~ 80 (251)
T PF11932_consen 41 QKRIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVA 80 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555554444444444444444444444443
No 79
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=90.50 E-value=6.3 Score=38.87 Aligned_cols=84 Identities=13% Similarity=0.214 Sum_probs=49.3
Q ss_pred hhHHHHHHHHHHHHHHhhhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHH
Q 028596 28 EQLDVARKITSIAISTRVSDLES-EHSALRSQLAEKDSRIAELQSQIESIYSSLS-----------------DKLGQAQA 89 (207)
Q Consensus 28 EQLdlArkIts~A~atRVs~LEs-E~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~-----------------~rL~~a~e 89 (207)
.||+--|+--. .+++++|. ++...|+.+.++-....+|+...+.++.+-+ ..|....+
T Consensus 328 sqleSqr~y~e----~~~~e~~qsqlen~k~~~e~~~~e~~~l~~~~~~~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E 403 (493)
T KOG0804|consen 328 SQLESQRKYYE----QIMSEYEQSQLENQKQYYELLITEADSLKQESSDLEAEKKIVERKLQQLQTKLKKCQKELKEERE 403 (493)
T ss_pred hhhhHHHHHHH----HHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47777665443 77777776 7777777777666555554433333333222 33334556
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHH
Q 028596 90 DKERLSKENEALTNTVRKLQRDVSKL 115 (207)
Q Consensus 90 e~~kL~kE~~sLa~TVKkL~RDvaKL 115 (207)
++..|.+..+...+++|+++....+.
T Consensus 404 ~n~~l~knq~vw~~kl~~~~e~~~~~ 429 (493)
T KOG0804|consen 404 ENKKLIKNQDVWRGKLKELEEREKEA 429 (493)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 66666666666666777766655443
No 80
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=90.33 E-value=2.1 Score=38.93 Aligned_cols=59 Identities=27% Similarity=0.414 Sum_probs=45.1
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTN 103 (207)
Q Consensus 41 ~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~~sLa~ 103 (207)
...++..++.+....+.+|.++...+.++++++..|+.++. .+..++.+|..+......
T Consensus 219 ~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~~l~~~~~----~~~~e~~~l~~~~~~~~~ 277 (344)
T PF12777_consen 219 KRQKLEEAEAELEEAEEQLAEKQAELAELEEKLAALQKEYE----EAQKEKQELEEEIEETER 277 (344)
T ss_dssp HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHh
Confidence 34677888888889999999999999999999888888887 566666666666544443
No 81
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=90.29 E-value=1.7 Score=43.99 Aligned_cols=84 Identities=26% Similarity=0.430 Sum_probs=53.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhhhHHHHH
Q 028596 47 DLESEHSALRSQLAEKDSRIAELQSQIESIYS---SLSDKLGQAQADKERLSKENEALTNT-------VRKLQRDVSKLE 116 (207)
Q Consensus 47 ~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~---~L~~rL~~a~ee~~kL~kE~~sLa~T-------VKkL~RDvaKLE 116 (207)
+||+|+.+||..|.--...-.||+.+++.|+. .+..-|.+..++++.|+.....|... +..|.|.++-..
T Consensus 422 rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~ 501 (697)
T PF09726_consen 422 RLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEER 501 (697)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999999999999999999776655 33355556666666666655555432 223333333333
Q ss_pred HHHHHHHhhccccc
Q 028596 117 VFRKTLVQSLKDDE 130 (207)
Q Consensus 117 ~FKk~LmqSLq~D~ 130 (207)
.-|..|=..|+++-
T Consensus 502 ~~R~~lEkQL~eEr 515 (697)
T PF09726_consen 502 RQRASLEKQLQEER 515 (697)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444555543
No 82
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=90.15 E-value=3.9 Score=43.35 Aligned_cols=76 Identities=4% Similarity=0.220 Sum_probs=39.4
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028596 40 AISTRVSDLESEHSALRSQLAEK--DSRIAELQSQIESIYSSLS--------DKLGQAQADKERLSKENEALTNTVRKLQ 109 (207)
Q Consensus 40 A~atRVs~LEsE~~~LR~~LaEK--d~~i~eLq~rvs~Le~~L~--------~rL~~a~ee~~kL~kE~~sLa~TVKkL~ 109 (207)
++...+..++.+-+.|+..|.-+ ...+.+++.++..|+.++. .-+....++...|..++..|..++++|.
T Consensus 1002 ~l~kel~~~~~~kr~l~dnL~~~~~~~~l~el~~eI~~l~~~~~~~~~~~~~~e~~~l~~~~~~l~~~~a~l~g~~k~le 1081 (1311)
T TIGR00606 1002 LMRQDIDTQKIQERWLQDNLTLRKRENELKEVEEELKQHLKEMGQMQVLQMKQEHQKLEENIDLIKRNHVLALGRQKGYE 1081 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555555555544 5555666666666665554 2333444444555545555555555555
Q ss_pred hhHHHH
Q 028596 110 RDVSKL 115 (207)
Q Consensus 110 RDvaKL 115 (207)
.+++.|
T Consensus 1082 ~qi~~l 1087 (1311)
T TIGR00606 1082 KEIKHF 1087 (1311)
T ss_pred HHHHHH
Confidence 555443
No 83
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=90.05 E-value=5.7 Score=39.90 Aligned_cols=42 Identities=19% Similarity=0.415 Sum_probs=30.9
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (207)
Q Consensus 40 A~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~ 81 (207)
++.+|...++..+..|...+.+|..+|..|+.....|-..+-
T Consensus 284 ~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie 325 (581)
T KOG0995|consen 284 QMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIE 325 (581)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777777777777777777777777777777766554
No 84
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=90.03 E-value=6.6 Score=39.15 Aligned_cols=83 Identities=19% Similarity=0.332 Sum_probs=42.4
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028596 42 STRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS----------DKLGQAQADKERLSKENEALTNTVRKLQRD 111 (207)
Q Consensus 42 atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~----------~rL~~a~ee~~kL~kE~~sLa~TVKkL~RD 111 (207)
-.++...+.|-..|.+....=......|++++..|+.+|. .+..........|.+|++.|.....++...
T Consensus 142 Q~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~~e~~~r 221 (546)
T PF07888_consen 142 QNQLEECQKEKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQLAEARQR 221 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444333444556666666666554 122233444555666666666666666666
Q ss_pred HHHHHHHHHHHHh
Q 028596 112 VSKLEVFRKTLVQ 124 (207)
Q Consensus 112 vaKLE~FKk~Lmq 124 (207)
+..||.=.++|-+
T Consensus 222 i~~LEedi~~l~q 234 (546)
T PF07888_consen 222 IRELEEDIKTLTQ 234 (546)
T ss_pred HHHHHHHHHHHHH
Confidence 6666544444433
No 85
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=89.97 E-value=6.1 Score=34.84 Aligned_cols=78 Identities=22% Similarity=0.400 Sum_probs=47.7
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH-------HHHHHHHHHHHHHHHh
Q 028596 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKER-------LSKENEALTNTVRKLQ 109 (207)
Q Consensus 40 A~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~---~rL~~a~ee~~k-------L~kE~~sLa~TVKkL~ 109 (207)
-|--|+..+|.+....+..|.+....+..|.++...++.+-. .+-..+.+++.. ..+|+..|+.-+..+.
T Consensus 9 Ele~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aeeea~~Le~k~~eaee~~~rL~~~~~~~~eEk~~Le~e~~e~~ 88 (246)
T PF00769_consen 9 ELEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEEEAEELEQKRQEAEEEKQRLEEEAEMQEEEKEQLEQELREAE 88 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466788889999999999998888888888777766555433 333334444433 3456666666666666
Q ss_pred hhHHHHHH
Q 028596 110 RDVSKLEV 117 (207)
Q Consensus 110 RDvaKLE~ 117 (207)
..+++|+.
T Consensus 89 ~~i~~l~e 96 (246)
T PF00769_consen 89 AEIARLEE 96 (246)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666544
No 86
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=89.94 E-value=6.1 Score=40.13 Aligned_cols=63 Identities=19% Similarity=0.286 Sum_probs=35.4
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVR 106 (207)
Q Consensus 40 A~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~~sLa~TVK 106 (207)
++..||..|..+...-..+|.+-.+.+..|+++...|. +|+..+.+.+++|.+.-+.+.+.+.
T Consensus 562 ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~La----eR~e~a~d~Qe~L~~R~~~vl~~l~ 624 (717)
T PF10168_consen 562 EIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLA----ERYEEAKDKQEKLMKRVDRVLQLLN 624 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66666666666666555555555555555544444333 4555666666666665555544443
No 87
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=89.87 E-value=5.4 Score=39.94 Aligned_cols=86 Identities=26% Similarity=0.423 Sum_probs=52.9
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 40 AISTRVSDLESEHSALRSQLAEKD----------------SRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTN 103 (207)
Q Consensus 40 A~atRVs~LEsE~~~LR~~LaEKd----------------~~i~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~~sLa~ 103 (207)
....||..||..+..|+.++++.. +.+..|++++..|+..|+ .-..++..|..-+.....
T Consensus 47 ~~~~~V~eLE~sL~eLk~q~~~~~~~~~pa~pse~E~~Lq~E~~~L~kElE~L~~qlq----aqv~~ne~Ls~L~~EqEe 122 (617)
T PF15070_consen 47 HDISRVQELERSLSELKNQMAEPPPPEPPAGPSEVEQQLQAEAEHLRKELESLEEQLQ----AQVENNEQLSRLNQEQEE 122 (617)
T ss_pred HHHHHHHHHHHHHHHHHHhhcccCCccccccchHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 567899999999999999887332 234456666666666555 444455566555555555
Q ss_pred HHHHHhhhHHHHHHHH---HHHHhhcccc
Q 028596 104 TVRKLQRDVSKLEVFR---KTLVQSLKDD 129 (207)
Q Consensus 104 TVKkL~RDvaKLE~FK---k~LmqSLq~D 129 (207)
.+..|.+.|..++... ..|+..++.|
T Consensus 123 rL~ELE~~le~~~e~~~D~~kLLe~lqsd 151 (617)
T PF15070_consen 123 RLAELEEELERLQEQQEDRQKLLEQLQSD 151 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 5666666665555542 3344444433
No 88
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=89.86 E-value=4.8 Score=45.32 Aligned_cols=89 Identities=20% Similarity=0.363 Sum_probs=71.6
Q ss_pred hhHHHHHHHHH-----HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Q 028596 28 EQLDVARKITS-----IAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENE 99 (207)
Q Consensus 28 EQLdlArkIts-----~A~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~---~rL~~a~ee~~kL~kE~~ 99 (207)
|.++++-.|.. .+..+.=.+||.+|..|...|+|......-..+|+..+...+. .-|..-.+.+.+|...|.
T Consensus 1696 e~~E~~e~i~~~~~~~s~l~~~KrklE~~i~~l~~elee~~~~~~~~~Er~kka~~~a~~~~~el~~Eq~~~~~le~~k~ 1775 (1930)
T KOG0161|consen 1696 ELEELAERVNELNAQNSSLTAEKRKLEAEIAQLQSELEEEQSELRAAEERAKKAQADAAKLAEELRKEQETSQKLERLKK 1775 (1930)
T ss_pred HHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 34444444444 3666777889999999999999999999999999998888777 788888899999999999
Q ss_pred HHHHHHHHHhhhHHHHH
Q 028596 100 ALTNTVRKLQRDVSKLE 116 (207)
Q Consensus 100 sLa~TVKkL~RDvaKLE 116 (207)
+|..+||.|.-.+..+|
T Consensus 1776 ~LE~~~kdLq~rL~e~E 1792 (1930)
T KOG0161|consen 1776 SLERQVKDLQLRLDEAE 1792 (1930)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999998875554444
No 89
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=89.80 E-value=6.6 Score=29.15 Aligned_cols=23 Identities=26% Similarity=0.494 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 028596 86 QAQADKERLSKENEALTNTVRKL 108 (207)
Q Consensus 86 ~a~ee~~kL~kE~~sLa~TVKkL 108 (207)
...+++.+|..|+......++.|
T Consensus 43 ~L~~en~~L~~e~~~~~~rl~~L 65 (72)
T PF06005_consen 43 ELKEENEQLKQERNAWQERLRSL 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555544444444
No 90
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=89.77 E-value=3.3 Score=40.85 Aligned_cols=29 Identities=14% Similarity=0.249 Sum_probs=20.3
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHhhccccc
Q 028596 102 TNTVRKLQRDVSKLEVFRKTLVQSLKDDE 130 (207)
Q Consensus 102 a~TVKkL~RDvaKLE~FKk~LmqSLq~D~ 130 (207)
......|+|++.-.+..=..|++.+++-.
T Consensus 375 ~~e~~~L~Re~~~~~~~Y~~ll~r~~e~~ 403 (754)
T TIGR01005 375 QVDLDALQRDAAAKRQLYESYLTNYRQAA 403 (754)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566777888777777777777766543
No 91
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=89.76 E-value=9.4 Score=30.84 Aligned_cols=72 Identities=25% Similarity=0.403 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHhhhHHHHHHHHHHHHhhccc
Q 028596 53 SALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEAL---TNTVRKLQRDVSKLEVFRKTLVQSLKD 128 (207)
Q Consensus 53 ~~LR~~LaEKd~~i~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~~sL---a~TVKkL~RDvaKLE~FKk~LmqSLq~ 128 (207)
.+|...+.-++-.+..|+.++..|+.+=. .+.++..+|..+++.+ ...+..|.+++..|+.==.++++=|++
T Consensus 19 e~L~s~lr~~E~E~~~l~~el~~l~~~r~----~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGE 93 (120)
T PF12325_consen 19 ERLQSQLRRLEGELASLQEELARLEAERD----ELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGE 93 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34444455555556666666666665554 6666666666666444 455566666666666555555554443
No 92
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=89.73 E-value=10 Score=31.16 Aligned_cols=79 Identities=22% Similarity=0.355 Sum_probs=62.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 028596 46 SDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTL 122 (207)
Q Consensus 46 s~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~---~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDvaKLE~FKk~L 122 (207)
-+|.-|...|..++.||...+..|+.++..-=..|. .+|.....++..+..+-......+.++..++.+++.=+..+
T Consensus 45 eqLkien~~l~~kIeERn~eL~~Lk~~~~~~v~~L~h~keKl~~~~~~~~~l~~~l~~~~~~~~~~r~~l~~~k~~r~k~ 124 (177)
T PF13870_consen 45 EQLKIENQQLNEKIEERNKELLKLKKKIGKTVQILTHVKEKLHFLSEELERLKQELKDREEELAKLREELYRVKKERDKL 124 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677889999999999999999988876666666 88888888888888888888888888888887776655544
Q ss_pred Hh
Q 028596 123 VQ 124 (207)
Q Consensus 123 mq 124 (207)
-.
T Consensus 125 ~~ 126 (177)
T PF13870_consen 125 RK 126 (177)
T ss_pred HH
Confidence 44
No 93
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=89.67 E-value=3.2 Score=30.53 Aligned_cols=50 Identities=20% Similarity=0.374 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 028596 63 DSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLE 116 (207)
Q Consensus 63 d~~i~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDvaKLE 116 (207)
+..|..|+.++..+++.+. ....++..|..||+..+.++-....+..+|.
T Consensus 4 ea~~~~Lr~rLd~~~rk~~----~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk 53 (69)
T PF14197_consen 4 EAEIATLRNRLDSLTRKNS----VHEIENKRLRRERDSAERQLGDAYEENNKLK 53 (69)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678889999998888887 7788889999999998888877777766653
No 94
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=89.63 E-value=8.5 Score=38.58 Aligned_cols=72 Identities=21% Similarity=0.403 Sum_probs=52.4
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 028596 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS------DKLGQAQADKERLSKENEALTNTVRKLQRDV 112 (207)
Q Consensus 41 ~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~------~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDv 112 (207)
++++..+-=.-+.+|.....+|+..|..|+++...|-.++. .-...-.++..+|.+|-+-.--..-+|.+.|
T Consensus 321 mk~K~~~~~g~l~kl~~eie~kEeei~~L~~~~d~L~~q~~kq~Is~e~fe~mn~Ere~L~reL~~i~~~~~~L~k~V 398 (622)
T COG5185 321 MKQKSQEWPGKLEKLKSEIELKEEEIKALQSNIDELHKQLRKQGISTEQFELMNQEREKLTRELDKINIQSDKLTKSV 398 (622)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 33333333344778888889999999999999999998887 5566667777788877766666666666554
No 95
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=89.58 E-value=4.5 Score=38.44 Aligned_cols=80 Identities=18% Similarity=0.244 Sum_probs=50.1
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHH
Q 028596 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSL---------------------SDKLGQAQADKERLSKEN 98 (207)
Q Consensus 40 A~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L---------------------~~rL~~a~ee~~kL~kE~ 98 (207)
+...++..|+.++..|+.++++-...+..++.++.-|+.-- .+-+....++..+|..+.
T Consensus 68 ~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (525)
T TIGR02231 68 PDPERLAELRKQIRELEAELRDLEDRGDALKALAKFLEDIREGLTEPIKDSAKRNEPDLKEWFQAFDFNGSEIERLLTED 147 (525)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34457777777777777777777777766666665554432 022223334556666777
Q ss_pred HHHHHHHHHHhhhHHHHHHHH
Q 028596 99 EALTNTVRKLQRDVSKLEVFR 119 (207)
Q Consensus 99 ~sLa~TVKkL~RDvaKLE~FK 119 (207)
..|...+++|.+.+++|+.=.
T Consensus 148 ~~~~~~~~~~~~~l~~l~~~l 168 (525)
T TIGR02231 148 REAERRIRELEKQLSELQNEL 168 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777775433
No 96
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=89.57 E-value=5.7 Score=40.70 Aligned_cols=82 Identities=20% Similarity=0.250 Sum_probs=55.3
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHH----------HHHHHHHHHHHHHHHHHHHHH
Q 028596 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESI-------YSSLS----------DKLGQAQADKERLSKENEALT 102 (207)
Q Consensus 40 A~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~L-------e~~L~----------~rL~~a~ee~~kL~kE~~sLa 102 (207)
.|..|+..||.|+..+|..+......+..|......+ |.+.. -|=...++|...|.+||=+|.
T Consensus 31 ~~~~~i~~l~~elk~~~~~~~~~~~e~~rl~~~~~~~~~~~~~~e~~~~~lr~e~ke~K~rE~rll~dyselEeENislQ 110 (717)
T PF09730_consen 31 YLQQRILELENELKQLRQELSNVQAENERLSQLNQELRKECEDLELERKRLREEIKEYKFREARLLQDYSELEEENISLQ 110 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 5788999999999999999886655554444433333 33222 222334567788888888888
Q ss_pred HHHHHHhhhHHHHHHHHHH
Q 028596 103 NTVRKLQRDVSKLEVFRKT 121 (207)
Q Consensus 103 ~TVKkL~RDvaKLE~FKk~ 121 (207)
.+|-.|...=--+|.||--
T Consensus 111 Kqvs~Lk~sQvefE~~Khe 129 (717)
T PF09730_consen 111 KQVSVLKQSQVEFEGLKHE 129 (717)
T ss_pred HHHHHHHHhHHHHHHHHHH
Confidence 8888777666666666643
No 97
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=89.21 E-value=9 Score=40.75 Aligned_cols=77 Identities=9% Similarity=0.242 Sum_probs=41.7
Q ss_pred HHHHHHHHH-HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 30 LDVARKITS-IAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVR 106 (207)
Q Consensus 30 LdlArkIts-~A~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~~sLa~TVK 106 (207)
+.++.++.. ..+..++..|..++..++..+.+.+..|..|+.++..+...+..--....++..+++.+.+.+...+.
T Consensus 874 lkl~~~l~~r~~le~~L~el~~el~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 951 (1311)
T TIGR00606 874 LQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQEKEELISSKETSNKKAQDKVNDIKEKVK 951 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334443333 25666666666667777777777777777777777666666642122223333444444444443333
No 98
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=89.15 E-value=11 Score=39.70 Aligned_cols=40 Identities=20% Similarity=0.368 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Q 028596 85 GQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQ 124 (207)
Q Consensus 85 ~~a~ee~~kL~kE~~sLa~TVKkL~RDvaKLE~FKk~Lmq 124 (207)
.....+...|......+.+.++.+.+++.++..-...+.+
T Consensus 442 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (1163)
T COG1196 442 EELNEELEELEEQLEELRDRLKELERELAELQEELQRLEK 481 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555566666666666666655554444433
No 99
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=89.11 E-value=5.1 Score=42.76 Aligned_cols=35 Identities=31% Similarity=0.419 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhc
Q 028596 92 ERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSL 126 (207)
Q Consensus 92 ~kL~kE~~sLa~TVKkL~RDvaKLE~FKk~LmqSL 126 (207)
..+..++...++-.+-|.+.|.+||..-..|-..+
T Consensus 390 ~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~ 424 (1074)
T KOG0250|consen 390 NELGSELEERENKLEQLKKEVEKLEEQINSLREEL 424 (1074)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666677777778888888887555444443
No 100
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=89.05 E-value=7.6 Score=40.78 Aligned_cols=23 Identities=26% Similarity=0.479 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHH
Q 028596 93 RLSKENEALTNTVRKLQRDVSKL 115 (207)
Q Consensus 93 kL~kE~~sLa~TVKkL~RDvaKL 115 (207)
.|.++-..+...+..+...+.++
T Consensus 888 ~l~~~l~~~~~~~~~~~~~~~~~ 910 (1163)
T COG1196 888 ELEEELRELESELAELKEEIEKL 910 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 101
>PRK09039 hypothetical protein; Validated
Probab=88.95 E-value=4.9 Score=36.98 Aligned_cols=12 Identities=8% Similarity=0.216 Sum_probs=4.5
Q ss_pred HHHHHHHHHHHH
Q 028596 70 QSQIESIYSSLS 81 (207)
Q Consensus 70 q~rvs~Le~~L~ 81 (207)
+.++..++.+|.
T Consensus 115 ~~~~~~l~~~L~ 126 (343)
T PRK09039 115 EGRAGELAQELD 126 (343)
T ss_pred HHHHHHHHHHHH
Confidence 333333333333
No 102
>PF09798 LCD1: DNA damage checkpoint protein; InterPro: IPR018622 This is a family of proteins which regulate checkpoint kinases. In Schizosaccharomyces pombe (Fission yeast) this protein is called Rad26 and in Saccharomyces cerevisiae (Baker's yeast) it is called LCD1 [].
Probab=88.89 E-value=2.2 Score=43.23 Aligned_cols=56 Identities=29% Similarity=0.477 Sum_probs=43.4
Q ss_pred HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028596 55 LRSQLA----EKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQR 110 (207)
Q Consensus 55 LR~~La----EKd~~i~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~~sLa~TVKkL~R 110 (207)
||+||. +|++++..+.+++..+.......|.....+.++|+.||.-|.+-+|.+..
T Consensus 2 LRdkL~~Lq~ek~~E~~~l~~~~~~lk~~~~~el~~Lk~~vqkLEDEKKFL~nE~r~~s~ 61 (654)
T PF09798_consen 2 LRDKLELLQQEKQKERQALKSSVEELKESHEEELNKLKSEVQKLEDEKKFLNNELRSLSS 61 (654)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455554 88888888888888888877767777777788888888888887777654
No 103
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=88.76 E-value=6.7 Score=39.76 Aligned_cols=74 Identities=23% Similarity=0.261 Sum_probs=44.5
Q ss_pred HhhhhhHHHHHHHHHHHHHH------H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 028596 43 TRVSDLESEHSALRSQLAEK------D--SRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSK 114 (207)
Q Consensus 43 tRVs~LEsE~~~LR~~LaEK------d--~~i~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDvaK 114 (207)
+|+-.||.|++.||.+++.- + ..|..+...+.+.|...+--.........-|++|+....++|.+|.+.+..
T Consensus 249 ~ri~~lE~e~e~L~~ql~~~N~~~~~~~~~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e~e~~~~qI~~le~~l~~ 328 (629)
T KOG0963|consen 249 QRIVFLEREVEQLREQLAKANSSKKLAKIDDIDALGSVLNQKDSEIAQLSNDIERLEASLVEEREKHKAQISALEKELKA 328 (629)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhccCCchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888899999998887621 1 223444444444454444222334444455667777777777777777655
Q ss_pred HH
Q 028596 115 LE 116 (207)
Q Consensus 115 LE 116 (207)
..
T Consensus 329 ~~ 330 (629)
T KOG0963|consen 329 KI 330 (629)
T ss_pred HH
Confidence 33
No 104
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=88.48 E-value=4.2 Score=37.30 Aligned_cols=76 Identities=18% Similarity=0.222 Sum_probs=56.2
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 028596 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFR 119 (207)
Q Consensus 40 A~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDvaKLE~FK 119 (207)
-++.+...+-.|-..|+..+.+++....++|+|+..|+.+.+ ...++..+|-.|-..|......|.-.|.-+|.|.
T Consensus 139 e~kekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s----~LeE~~~~l~~ev~~L~~r~~ELe~~~El~e~~~ 214 (290)
T COG4026 139 ELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENS----RLEEMLKKLPGEVYDLKKRWDELEPGVELPEEEL 214 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhchhHHHHHHHHHHHhcccccchHHHH
Confidence 567778888888888999999999999999988888888876 5555556666666666666666666666666664
No 105
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=88.47 E-value=2.7 Score=37.33 Aligned_cols=61 Identities=26% Similarity=0.405 Sum_probs=32.5
Q ss_pred HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 028596 51 EHSALRSQLAE---KDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKL 115 (207)
Q Consensus 51 E~~~LR~~LaE---Kd~~i~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDvaKL 115 (207)
+...+|.++.- ..+.+..+.+....|+.+++ ....+-+++++.+++|..++..+++.-++|
T Consensus 135 ~~~~lk~~~~~~~~~~~~~~~~~~~~~kL~~el~----~~~~~Le~~~~~~~al~Kq~e~~~~EydrL 198 (216)
T KOG1962|consen 135 ENEALKKQLENSSKLEEENDKLKADLEKLETELE----KKQKKLEKAQKKVDALKKQSEGLQDEYDRL 198 (216)
T ss_pred HHHHHHHhhhcccchhhhHHHHHhhHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHcccHHHHH
Confidence 45555555542 13334444444444444444 445555566666666666666666666555
No 106
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=88.46 E-value=17 Score=36.74 Aligned_cols=92 Identities=16% Similarity=0.312 Sum_probs=53.5
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH----------
Q 028596 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVR---------- 106 (207)
Q Consensus 40 A~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~---~rL~~a~ee~~kL~kE~~sLa~TVK---------- 106 (207)
+..+|...|+-..++|+..+..=..-+.++..+-..++..|. .-+....+++.+|+++++.|-+.|.
T Consensus 256 k~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~iS~~dve 335 (581)
T KOG0995|consen 256 KDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEKLQKENDELKKQIELQGISGEDVE 335 (581)
T ss_pred cCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 444555555555555554444444444444444444444333 3334888889999999999988775
Q ss_pred -------HHhhhHHHHHHHHHHHHhhcccccC
Q 028596 107 -------KLQRDVSKLEVFRKTLVQSLKDDED 131 (207)
Q Consensus 107 -------kL~RDvaKLE~FKk~LmqSLq~D~~ 131 (207)
+|.|+|.++..=+-.|++.+-+-+.
T Consensus 336 ~mn~Er~~l~r~l~~i~~~~d~l~k~vw~~~l 367 (581)
T KOG0995|consen 336 RMNLERNKLKRELNKIQSELDRLSKEVWELKL 367 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 4566676666655566665554433
No 107
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=88.42 E-value=2.6 Score=32.79 Aligned_cols=21 Identities=14% Similarity=0.278 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhH
Q 028596 92 ERLSKENEALTNTVRKLQRDV 112 (207)
Q Consensus 92 ~kL~kE~~sLa~TVKkL~RDv 112 (207)
.++..+-+.|..+++-++|.+
T Consensus 75 ~el~G~~~~l~~~l~~v~~~~ 95 (106)
T PF10805_consen 75 AELRGELKELSARLQGVSHQL 95 (106)
T ss_pred HHHHhHHHHHHHHHHHHHHHH
Confidence 333344444444444444333
No 108
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=88.35 E-value=7.6 Score=34.18 Aligned_cols=64 Identities=17% Similarity=0.248 Sum_probs=40.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028596 46 SDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQ 109 (207)
Q Consensus 46 s~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~---~rL~~a~ee~~kL~kE~~sLa~TVKkL~ 109 (207)
..|+.|++.||.-+..=.+....|..+...+|.+-+ +++....+++.+|..|.+-|....+-|+
T Consensus 63 K~l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~ 129 (193)
T PF14662_consen 63 KALEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELA 129 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHH
Confidence 345666667776666666666666666666666666 5666666666666666666655555553
No 109
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=88.29 E-value=10 Score=30.36 Aligned_cols=65 Identities=29% Similarity=0.358 Sum_probs=33.1
Q ss_pred hHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 028596 48 LESEHSALRSQLA-EKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVS 113 (207)
Q Consensus 48 LEsE~~~LR~~La-EKd~~i~eLq~rvs~Le~~L~---~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDva 113 (207)
|=.|-..||.+.. =|...| +=|.+...|...|. ..|+...+|+.-|.=.|+.|...|-.|+-++.
T Consensus 3 la~eYsKLraQ~~vLKKaVi-eEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~ 71 (102)
T PF10205_consen 3 LAQEYSKLRAQNQVLKKAVI-EEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELE 71 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666776666 344444 33456666665555 23334445554454445555544444444444
No 110
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=88.18 E-value=8.7 Score=30.72 Aligned_cols=25 Identities=28% Similarity=0.448 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 54 ALRSQLAEKDSRIAELQSQIESIYS 78 (207)
Q Consensus 54 ~LR~~LaEKd~~i~eLq~rvs~Le~ 78 (207)
.|+.+|.+|+..|..++..+.+|..
T Consensus 30 ~L~e~Lk~ke~~LRk~eqE~dSL~F 54 (102)
T PF10205_consen 30 ELKEQLKEKEQALRKLEQENDSLTF 54 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444443333
No 111
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=88.07 E-value=13 Score=32.40 Aligned_cols=20 Identities=30% Similarity=0.368 Sum_probs=11.4
Q ss_pred HHHhhhhhHHHHHHHHHHHH
Q 028596 41 ISTRVSDLESEHSALRSQLA 60 (207)
Q Consensus 41 ~atRVs~LEsE~~~LR~~La 60 (207)
|-.||..||.+-..|..++.
T Consensus 16 YIekVr~LE~~N~~Le~~i~ 35 (312)
T PF00038_consen 16 YIEKVRFLEQENKRLESEIE 35 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHH
Confidence 55566666666555555544
No 112
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=88.01 E-value=9.7 Score=39.32 Aligned_cols=72 Identities=32% Similarity=0.391 Sum_probs=43.3
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028596 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS----------DKLGQAQADKERLSKENEALTNTVRKLQ 109 (207)
Q Consensus 40 A~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~----------~rL~~a~ee~~kL~kE~~sLa~TVKkL~ 109 (207)
|.-.+-..|-+++.+||..|.+|...+...+.++..++.+.. +.+.....+...|++..++|..+++.=.
T Consensus 333 ~ke~~~~~Lqsdve~Lr~rle~k~~~l~kk~~~~~~~qeE~~~~~~Ei~~l~d~~d~~e~ki~~Lq~kie~Lee~l~ekd 412 (775)
T PF10174_consen 333 AKEQEAEMLQSDVEALRFRLEEKNSQLEKKQAQIEKLQEEKSRLQGEIEDLRDMLDKKERKINVLQKKIENLEEQLREKD 412 (775)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666677777777777777666666666666665544 3444555555666666666666555433
Q ss_pred hh
Q 028596 110 RD 111 (207)
Q Consensus 110 RD 111 (207)
+.
T Consensus 413 ~q 414 (775)
T PF10174_consen 413 RQ 414 (775)
T ss_pred HH
Confidence 33
No 113
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=87.96 E-value=10 Score=38.27 Aligned_cols=77 Identities=23% Similarity=0.372 Sum_probs=57.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH-------HHHHHHHHHHHHHHhhhHH
Q 028596 44 RVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERL-------SKENEALTNTVRKLQRDVS 113 (207)
Q Consensus 44 RVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~---~rL~~a~ee~~kL-------~kE~~sLa~TVKkL~RDva 113 (207)
|=..|+.||++||..+.+-+..|..++..++.-|.++. ++++....++.=| ..+...|..-.++|+..|.
T Consensus 80 ~r~~L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~~~~~~~~~~k~~LL~Ay~q~c~~~~~~l~e~~~rl~~~~~ 159 (632)
T PF14817_consen 80 RRRELEKEVERLRAEIQELDKEIESREREVSRQEASREQMLDKISDSRHKQLLLEAYSQQCEEQRRILREYTKRLQGQVE 159 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66789999999999999999999999999999998887 5555555555333 3455556666666666666
Q ss_pred HHHHHHH
Q 028596 114 KLEVFRK 120 (207)
Q Consensus 114 KLE~FKk 120 (207)
.|+...|
T Consensus 160 ~~q~~~R 166 (632)
T PF14817_consen 160 QLQDIQR 166 (632)
T ss_pred HHHHHHh
Confidence 6655544
No 114
>PF11544 Spc42p: Spindle pole body component Spc42p; InterPro: IPR021611 Spc42p is a 42kDa component of the S.cerevisiae spindle body that localises to the electron dense central region of the SPB. Spc42p is a phosphoprotein which forms a polymeric layer at the periphery of the SPB central plaque. This functions during SPB duplication and also facilitates the attachment of the SPB to the nuclear membrane. ; PDB: 2Q6Q_B.
Probab=87.90 E-value=8.2 Score=29.55 Aligned_cols=52 Identities=19% Similarity=0.271 Sum_probs=38.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 48 LESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTN 103 (207)
Q Consensus 48 LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~~sLa~ 103 (207)
|=.+-..|+.+|.+|+++|..|..-+.+|...|+ .-.+-+.+|+.+...+..
T Consensus 3 Li~qNk~L~~kL~~K~eEI~rLn~lv~sLR~KLi----KYt~LnkkLq~~~~~~~~ 54 (76)
T PF11544_consen 3 LIKQNKELKKKLNDKQEEIDRLNILVGSLRGKLI----KYTELNKKLQDQLLNLQR 54 (76)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHh
Confidence 4456789999999999999988877777776666 667777777777766655
No 115
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=87.78 E-value=17 Score=31.41 Aligned_cols=52 Identities=13% Similarity=0.128 Sum_probs=24.0
Q ss_pred hHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 29 QLDVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (207)
Q Consensus 29 QLdlArkIts~A~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~ 81 (207)
+++-+..........+. ....++..+-++-.+-.+.|..|++++..|+....
T Consensus 22 ~~~~~~~~~~~~~~~~~-~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~ 73 (251)
T PF11932_consen 22 TLDQAQQVQQQWVQAAQ-QSQKRIDQWDDEKQELLAEYRQLEREIENLEVYNE 73 (251)
T ss_pred cHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444432 23334444444444444455555555555554443
No 116
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=87.68 E-value=13 Score=34.02 Aligned_cols=16 Identities=31% Similarity=0.397 Sum_probs=10.0
Q ss_pred hhhhHHHHHHHHHHHH
Q 028596 45 VSDLESEHSALRSQLA 60 (207)
Q Consensus 45 Vs~LEsE~~~LR~~La 60 (207)
|-.|.+++..||.++.
T Consensus 284 v~~l~~~i~~l~~~l~ 299 (444)
T TIGR03017 284 YKRAQAEINSLKSQLN 299 (444)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5556666666666664
No 117
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=87.68 E-value=19 Score=31.88 Aligned_cols=52 Identities=17% Similarity=0.401 Sum_probs=29.8
Q ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 028596 60 AEKDSRIAEL---QSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKL 115 (207)
Q Consensus 60 aEKd~~i~eL---q~rvs~Le~~L~~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDvaKL 115 (207)
.||.+|..+| ..-++.||..+. ++..+..+..+.-..|-.-+..|-..|.++
T Consensus 46 ~Er~~h~eeLrqI~~DIn~lE~iIk----qa~~er~~~~~~i~r~~eey~~Lk~~in~~ 100 (230)
T PF10146_consen 46 QERMAHVEELRQINQDINTLENIIK----QAESERNKRQEKIQRLYEEYKPLKDEINEL 100 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3777777777 566777777776 555555444444444444444444444433
No 118
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=87.67 E-value=9.8 Score=32.76 Aligned_cols=78 Identities=19% Similarity=0.339 Sum_probs=50.2
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH---HHH-----HHHHHHHHHHHHHHHHHHHHH
Q 028596 39 IAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DK---LGQ-----AQADKERLSKENEALTNTVRK 107 (207)
Q Consensus 39 ~A~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~---~r---L~~-----a~ee~~kL~kE~~sLa~TVKk 107 (207)
..+..-+.+...|++.||.+|-.....+.+++.++-..+.++. +. |.. -+.+..+|+.+-+.+...+..
T Consensus 57 ~~Lpqll~~h~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~eReeL~~kL~~~~~~l~~ 136 (194)
T PF15619_consen 57 AELPQLLQRHNEEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKHLKKLSEDKNLAEREELQRKLSQLEQKLQE 136 (194)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHH
Confidence 3566777888889999999988888888888888888877776 22 222 112334555555555555544
Q ss_pred HhhhHHHHH
Q 028596 108 LQRDVSKLE 116 (207)
Q Consensus 108 L~RDvaKLE 116 (207)
-.+.+..|+
T Consensus 137 ~~~ki~~Le 145 (194)
T PF15619_consen 137 KEKKIQELE 145 (194)
T ss_pred HHHHHHHHH
Confidence 445555444
No 119
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=87.36 E-value=13 Score=34.82 Aligned_cols=100 Identities=25% Similarity=0.383 Sum_probs=56.9
Q ss_pred chhhHHHHHHHHHHHHHH---hhhhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Q 028596 26 PFEQLDVARKITSIAIST---RVSDLESEHSALRSQLAEK-DSRIAELQSQIESIYSSLSDKLGQAQADKERLSKE---- 97 (207)
Q Consensus 26 P~EQLdlArkIts~A~at---RVs~LEsE~~~LR~~LaEK-d~~i~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE---- 97 (207)
|..|=+|++|=..--++- |+..=|.||..||.||+-. +.=|++= --..|++|. |++|+.|+.+|..-
T Consensus 62 PLQQKEV~iRHLkakLkes~~~l~dRetEI~eLksQL~RMrEDWIEEE---CHRVEAQLA--LKEARkEIkQLkQvieTm 136 (305)
T PF15290_consen 62 PLQQKEVCIRHLKAKLKESENRLHDRETEIDELKSQLARMREDWIEEE---CHRVEAQLA--LKEARKEIKQLKQVIETM 136 (305)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 567889988665544433 2333345566666666532 2223221 222344554 78999999888764
Q ss_pred HHHHHHHHH-------HHhhhHHHHHHHHHHH--H--hhccccc
Q 028596 98 NEALTNTVR-------KLQRDVSKLEVFRKTL--V--QSLKDDE 130 (207)
Q Consensus 98 ~~sLa~TVK-------kL~RDvaKLE~FKk~L--m--qSLq~D~ 130 (207)
|++|+..=| ..|-+--|||+|-+.. - .+++++.
T Consensus 137 rssL~ekDkGiQKYFvDINiQN~KLEsLLqsMElAq~g~~rde~ 180 (305)
T PF15290_consen 137 RSSLAEKDKGIQKYFVDINIQNKKLESLLQSMELAQSGSLRDEG 180 (305)
T ss_pred HhhhchhhhhHHHHHhhhhhhHhHHHHHHHHHHHHHhccccccC
Confidence 455555433 3445667899998742 2 2566653
No 120
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=87.36 E-value=2.9 Score=30.15 Aligned_cols=38 Identities=26% Similarity=0.474 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 66 IAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRK 107 (207)
Q Consensus 66 i~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~~sLa~TVKk 107 (207)
|.+|+.++..++..+. ....++.+|.++...+..+||+
T Consensus 2 i~elEn~~~~~~~~i~----tvk~en~~i~~~ve~i~envk~ 39 (55)
T PF05377_consen 2 IDELENELPRIESSIN----TVKKENEEISESVEKIEENVKD 39 (55)
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555543 3334444444444444444433
No 121
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=87.24 E-value=5 Score=44.92 Aligned_cols=56 Identities=34% Similarity=0.518 Sum_probs=43.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 46 SDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEAL 101 (207)
Q Consensus 46 s~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~~sL 101 (207)
.+|.++|++|+..|.+|+++|++|..+...+...++.++.....++..|.++-..|
T Consensus 1310 ~kL~~ei~~Lk~el~~ke~~~~el~~~~~~~q~~~k~qld~l~~e~~~lt~~~~ql 1365 (1822)
T KOG4674|consen 1310 EKLKSEISRLKEELEEKENLIAELKKELNRLQEKIKKQLDELNNEKANLTKELEQL 1365 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777999999999999999999999999988777666666666665555554443
No 122
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=87.24 E-value=11 Score=32.31 Aligned_cols=43 Identities=28% Similarity=0.435 Sum_probs=34.5
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHH
Q 028596 39 IAISTRVSDLESEHSALRSQLAEKDSRIAELQSQI-----ESIYSSLS 81 (207)
Q Consensus 39 ~A~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rv-----s~Le~~L~ 81 (207)
..+..-+.++|.||..||+-|+-|.++.++|++|+ ..|...|.
T Consensus 32 eeLr~EL~KvEeEI~TLrqvL~aKer~~~eLKrkLGit~l~elkqnls 79 (162)
T PF04201_consen 32 EELRSELAKVEEEIQTLRQVLAAKERHCAELKRKLGITPLSELKQNLS 79 (162)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCCchHHHHHHHHH
Confidence 34556678899999999999999999999999885 44444444
No 123
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=87.20 E-value=11 Score=39.53 Aligned_cols=73 Identities=22% Similarity=0.292 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 028596 52 HSALRSQLAEKDSRIAELQSQIE-----------SIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEV 117 (207)
Q Consensus 52 ~~~LR~~LaEKd~~i~eLq~rvs-----------~Le~~L~---~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDvaKLE~ 117 (207)
+.+|+.++.++...++.+..|.. +.+.-|+ ...-+++|+++.|..|-+++.+++-.++++=.||-+
T Consensus 165 ~~kl~~~~qe~naeL~rarqreemneeh~~rlsdtvdErlqlhlkermaAle~kn~L~~e~~s~kk~l~~~~~~k~rl~~ 244 (916)
T KOG0249|consen 165 TRKLEEQLEELNAELQRARQREKMNEEHNKRLSDTVDERLQLHLKERMAALEDKNRLEQELESVKKQLEEMRHDKDKLRT 244 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45566666666666555554432 1122233 456678999999999999999999999999999888
Q ss_pred HHHHHHh
Q 028596 118 FRKTLVQ 124 (207)
Q Consensus 118 FKk~Lmq 124 (207)
|+-.|-+
T Consensus 245 d~E~Lr~ 251 (916)
T KOG0249|consen 245 DIEDLRG 251 (916)
T ss_pred hHHHHHH
Confidence 8876665
No 124
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=87.01 E-value=17 Score=30.57 Aligned_cols=78 Identities=17% Similarity=0.238 Sum_probs=49.5
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 028596 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEV 117 (207)
Q Consensus 40 A~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDvaKLE~ 117 (207)
+....+-.|..+...|..+...+.+.-...+.++..+|..+...-+........|+.++..|...++.+.-.+++|+.
T Consensus 47 ~~~~e~~~L~~d~e~L~~q~~~ek~~r~~~e~~l~~~Ed~~~~e~k~L~~~v~~Le~e~r~L~~~~~~~~~q~~rlee 124 (158)
T PF09744_consen 47 EHEVELELLREDNEQLETQYEREKELRKQAEEELLELEDQWRQERKDLQSQVEQLEEENRQLELKLKNLSDQSSRLEE 124 (158)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccch
Confidence 333444455555555555555444444555666666777766555666777778888888888777777777777664
No 125
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=86.94 E-value=12 Score=36.29 Aligned_cols=69 Identities=16% Similarity=0.279 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 028596 50 SEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTL 122 (207)
Q Consensus 50 sE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDvaKLE~FKk~L 122 (207)
.+....+..++++...|.+-+++...|+.+|. ....++..+..+....++++++++++++-++.-+..|
T Consensus 38 ~~l~q~q~ei~~~~~~i~~~~~~~~kL~~~lk----~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~~~l~~l 106 (420)
T COG4942 38 KQLKQIQKEIAALEKKIREQQDQRAKLEKQLK----SLETEIASLEAQLIETADDLKKLRKQIADLNARLNAL 106 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHH
Confidence 55677777888888888888888888877776 6677777777777777777777777777666544443
No 126
>PRK02119 hypothetical protein; Provisional
Probab=86.93 E-value=4.8 Score=29.76 Aligned_cols=30 Identities=23% Similarity=0.276 Sum_probs=17.6
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhcccc
Q 028596 100 ALTNTVRKLQRDVSKLEVFRKTLVQSLKDD 129 (207)
Q Consensus 100 sLa~TVKkL~RDvaKLE~FKk~LmqSLq~D 129 (207)
.|..+|.+.++++++|+.--+.|.+.|.+-
T Consensus 27 ~LN~~v~~Qq~~id~L~~ql~~L~~rl~~~ 56 (73)
T PRK02119 27 ELNQALIEQQFVIDKMQVQLRYMANKLKDM 56 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 445556666666666666666666655553
No 127
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=86.90 E-value=11 Score=35.07 Aligned_cols=87 Identities=17% Similarity=0.195 Sum_probs=53.4
Q ss_pred HhhhhhHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH---HHH
Q 028596 43 TRVSDLESEHSALRSQLAEKD--------------SRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENE---ALT 102 (207)
Q Consensus 43 tRVs~LEsE~~~LR~~LaEKd--------------~~i~eLq~rvs~Le~~L~---~rL~~a~ee~~kL~kE~~---sLa 102 (207)
-+|-.|..++..|+.++.+-- ....+|+.++..++.++. .++....+...++..+-. ...
T Consensus 275 P~v~~l~~qi~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~ 354 (498)
T TIGR03007 275 PDVIATKREIAQLEEQKEEEGSAKNGGPERGEIANPVYQQLQIELAEAEAEIASLEARVAELTARIERLESLLRTIPEVE 354 (498)
T ss_pred hHHHHHHHHHHHHHHHHHhhccccccCcccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHH
Confidence 356677777777777765321 123445555555555554 334444444444444433 455
Q ss_pred HHHHHHhhhHHHHHHHHHHHHhhcccc
Q 028596 103 NTVRKLQRDVSKLEVFRKTLVQSLKDD 129 (207)
Q Consensus 103 ~TVKkL~RDvaKLE~FKk~LmqSLq~D 129 (207)
.+...|+||+.-.+..=..+++.+++-
T Consensus 355 ~el~~L~Re~~~~~~~Y~~l~~r~eea 381 (498)
T TIGR03007 355 AELTQLNRDYEVNKSNYEQLLTRRESA 381 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677889999988888888888877653
No 128
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=86.75 E-value=8.5 Score=37.99 Aligned_cols=17 Identities=29% Similarity=0.350 Sum_probs=9.7
Q ss_pred hhhhhHHHHHHHHHHHH
Q 028596 44 RVSDLESEHSALRSQLA 60 (207)
Q Consensus 44 RVs~LEsE~~~LR~~La 60 (207)
+|..+++++..|++++.
T Consensus 317 ~v~~l~~qi~~l~~~i~ 333 (754)
T TIGR01005 317 RVVAAKSSLADLDAQIR 333 (754)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35555666666666554
No 129
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=86.73 E-value=8.1 Score=39.87 Aligned_cols=64 Identities=27% Similarity=0.390 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHH
Q 028596 33 ARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS----------DKLGQAQADKERLSKENEALT 102 (207)
Q Consensus 33 ArkIts~A~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~----------~rL~~a~ee~~kL~kE~~sLa 102 (207)
+.+..+.+.++|+ .+++.+|..|+..|..++.++..++.+.+ .-|..+.+++..|+.+++.|-
T Consensus 277 ~~~s~~~~mK~k~-------d~~~~eL~rk~~E~~~~qt~l~~~~~~~~d~r~hi~~lkesl~~ke~~~~~Lqsdve~Lr 349 (775)
T PF10174_consen 277 VYKSHSLAMKSKM-------DRLKLELSRKKSELEALQTRLETLEEQDSDMRQHIEVLKESLRAKEQEAEMLQSDVEALR 349 (775)
T ss_pred HHHhhHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 3455566666663 45555555555555555555555544444 122344455555555555444
Q ss_pred H
Q 028596 103 N 103 (207)
Q Consensus 103 ~ 103 (207)
.
T Consensus 350 ~ 350 (775)
T PF10174_consen 350 F 350 (775)
T ss_pred H
Confidence 3
No 130
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=86.62 E-value=9.7 Score=27.31 Aligned_cols=81 Identities=22% Similarity=0.375 Sum_probs=54.8
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 028596 40 AISTRVSDLESEHSALRSQLAEKD-----SRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSK 114 (207)
Q Consensus 40 A~atRVs~LEsE~~~LR~~LaEKd-----~~i~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDvaK 114 (207)
.+..++..|+.+...+...+.... ..+...+.-+..|+..+. ........+..+-..+-..+....+++.+
T Consensus 16 ~~~~~l~~L~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~i~----~~~~~~~~~~~~~~~~r~~l~~a~~~~k~ 91 (123)
T PF02050_consen 16 EAEEQLEQLQQERQEYQEQLSESQQGVSVAQLRNYQRYISALEQAIQ----QQQQELERLEQEVEQAREELQEARRERKK 91 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHT-----SGGGHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566777777777777777777666 555555555555555554 77777888888888888888888888888
Q ss_pred HHHHHHHHHh
Q 028596 115 LEVFRKTLVQ 124 (207)
Q Consensus 115 LE~FKk~Lmq 124 (207)
+|.++-.-..
T Consensus 92 ~e~L~e~~~~ 101 (123)
T PF02050_consen 92 LEKLKERRRE 101 (123)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888765443
No 131
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=86.58 E-value=14 Score=30.68 Aligned_cols=70 Identities=23% Similarity=0.346 Sum_probs=36.4
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 028596 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVS 113 (207)
Q Consensus 41 ~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~---~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDva 113 (207)
+.+....|+.|...||..-.+=+......+.||+.|+.... ..|....++..++.+ .+...|-.|..++.
T Consensus 64 lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~E~ek~q~~e---~~~~~ve~L~~ql~ 136 (140)
T PF10473_consen 64 LTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLNSSLENLLQEKEQEKVQLKE---ESKSAVEMLQKQLK 136 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHh
Confidence 34455556666666664333333334444555777776665 444566666444433 34445555555443
No 132
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=86.56 E-value=9.5 Score=31.64 Aligned_cols=32 Identities=31% Similarity=0.533 Sum_probs=29.9
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQS 71 (207)
Q Consensus 40 A~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~ 71 (207)
+.+.|+..++.|...|+.+|.+.+..|.+|+.
T Consensus 17 ~~K~~~~~~~~e~~~~k~ql~~~d~~i~~Lk~ 48 (155)
T PF06810_consen 17 APKAKVDKVKEERDNLKTQLKEADKQIKDLKK 48 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 57899999999999999999999999999987
No 133
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=86.53 E-value=13 Score=28.50 Aligned_cols=55 Identities=22% Similarity=0.270 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 028596 68 ELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTL 122 (207)
Q Consensus 68 eLq~rvs~Le~~L~---~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDvaKLE~FKk~L 122 (207)
.|++.+..++.-|. .+...|.....+=.+.+......+++|..+++.|...+..+
T Consensus 43 ~l~~~~~~f~~flken~~k~~rA~k~a~~e~k~~~~k~~ei~~l~~~l~~l~~~~~k~ 100 (126)
T PF13863_consen 43 ELEEDVIKFDKFLKENEAKRERAEKRAEEEKKKKEEKEAEIKKLKAELEELKSEISKL 100 (126)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444 44444444444444444444444444444444444444333
No 134
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=86.50 E-value=3.2 Score=34.46 Aligned_cols=68 Identities=21% Similarity=0.312 Sum_probs=32.4
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028596 40 AISTRVSDLESEHSALRSQLAEKDSRIAE-LQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRD 111 (207)
Q Consensus 40 A~atRVs~LEsE~~~LR~~LaEKd~~i~e-Lq~rvs~Le~~L~~rL~~a~ee~~kL~kE~~sLa~TVKkL~RD 111 (207)
.+..++..+|.+.+.++.+.......... ..+....++.++. ...++..+...|.+.|..+++.|+++
T Consensus 122 ~li~~l~~~~~~~~~~~kq~~~~~~~~~~~~~~~~~~~~~ei~----~lk~el~~~~~~~~~LkkQ~~~l~~e 190 (192)
T PF05529_consen 122 SLIKELIKLEEKLEALKKQAESASEAAEKLLKEENKKLSEEIE----KLKKELEKKEKEIEALKKQSEGLQKE 190 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44555555555555555554433222221 1122222233332 44444455666666666666666654
No 135
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=86.44 E-value=9.3 Score=31.31 Aligned_cols=63 Identities=22% Similarity=0.339 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHhhhHHHHHHHHHHHHhhccc
Q 028596 62 KDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENE-----ALTNTVRKLQRDVSKLEVFRKTLVQSLKD 128 (207)
Q Consensus 62 Kd~~i~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~~-----sLa~TVKkL~RDvaKLE~FKk~LmqSLq~ 128 (207)
|+....+|++++..+|.+|+ +..-...++..|.. .+.+--...+...++++.+|+.|.+-++.
T Consensus 18 K~~l~~~l~~~i~~~d~el~----QLefq~kr~~~e~~~~~~~~~~~i~~q~~~e~~~r~e~k~~l~~ql~q 85 (131)
T PF11068_consen 18 KEELLQELQEQIQQLDQELQ----QLEFQGKRMIKEIKKQNAQQIQSIQQQFEQEKQERLEQKNQLLQQLEQ 85 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67778888888888888887 55556666666654 44444466777777777777777665443
No 136
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=86.38 E-value=27 Score=34.09 Aligned_cols=12 Identities=8% Similarity=0.476 Sum_probs=5.9
Q ss_pred HHHHHHhhcccc
Q 028596 118 FRKTLVQSLKDD 129 (207)
Q Consensus 118 FKk~LmqSLq~D 129 (207)
.|..||..+.++
T Consensus 149 ak~~l~~~~~~~ 160 (514)
T TIGR03319 149 AKEILLEEVEEE 160 (514)
T ss_pred HHHHHHHHHHHH
Confidence 455555555443
No 137
>PRK12704 phosphodiesterase; Provisional
Probab=86.37 E-value=27 Score=34.14 Aligned_cols=12 Identities=8% Similarity=0.473 Sum_probs=5.9
Q ss_pred HHHHHHhhcccc
Q 028596 118 FRKTLVQSLKDD 129 (207)
Q Consensus 118 FKk~LmqSLq~D 129 (207)
.|+.||..+.++
T Consensus 155 a~~~l~~~~~~~ 166 (520)
T PRK12704 155 AKEILLEKVEEE 166 (520)
T ss_pred HHHHHHHHHHHH
Confidence 455555554443
No 138
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=86.36 E-value=4.4 Score=29.26 Aligned_cols=46 Identities=15% Similarity=0.417 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 028596 68 ELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEV 117 (207)
Q Consensus 68 eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDvaKLE~ 117 (207)
++++|+..++..+- ...++..+|..-...+...++.++.++.+++.
T Consensus 3 ~i~e~l~~ie~~l~----~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~ 48 (71)
T PF10779_consen 3 DIKEKLNRIETKLD----NHEERIDKLEKRDAANEKDIKNLNKQLEKIKS 48 (71)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555554443 44455555555555666667777777777765
No 139
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=86.14 E-value=12 Score=27.82 Aligned_cols=25 Identities=24% Similarity=0.429 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHH
Q 028596 89 ADKERLSKENEALTNTVRKLQRDVS 113 (207)
Q Consensus 89 ee~~kL~kE~~sLa~TVKkL~RDva 113 (207)
+++..|..+|..|..-..+|..+-.
T Consensus 32 e~n~~L~~e~~~L~~en~~L~~e~~ 56 (72)
T PF06005_consen 32 EKNNELKEENEELKEENEQLKQERN 56 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444443333
No 140
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=86.10 E-value=5.3 Score=27.91 Aligned_cols=21 Identities=29% Similarity=0.384 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 028596 61 EKDSRIAELQSQIESIYSSLS 81 (207)
Q Consensus 61 EKd~~i~eLq~rvs~Le~~L~ 81 (207)
-|...|.+|+.++..|+.+..
T Consensus 23 RKk~~~~~Le~~~~~L~~en~ 43 (64)
T PF00170_consen 23 RKKQYIEELEEKVEELESENE 43 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHHHH
Confidence 466677777777766655554
No 141
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=86.10 E-value=8.3 Score=29.99 Aligned_cols=35 Identities=17% Similarity=0.187 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 028596 88 QADKERLSKENEALTNTVRKLQRDVSKLEVFRKTL 122 (207)
Q Consensus 88 ~ee~~kL~kE~~sLa~TVKkL~RDvaKLE~FKk~L 122 (207)
.++..+|.-+-..+...++.++..+.-+...-.-|
T Consensus 64 ~~dv~~L~l~l~el~G~~~~l~~~l~~v~~~~~lL 98 (106)
T PF10805_consen 64 RDDVHDLQLELAELRGELKELSARLQGVSHQLDLL 98 (106)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666666666555554444333
No 142
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=85.91 E-value=11 Score=27.38 Aligned_cols=56 Identities=30% Similarity=0.395 Sum_probs=36.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028596 46 SDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQ 109 (207)
Q Consensus 46 s~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~~sLa~TVKkL~ 109 (207)
+.||+||+. |...-.+|. ++-.-..++..||..+..+|..|..|.+.|...+..+.
T Consensus 4 saL~~Eira-------kQ~~~eEL~-kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r 59 (61)
T PF08826_consen 4 SALEAEIRA-------KQAIQEELT-KVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELR 59 (61)
T ss_dssp HHHHHHHHH-------HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHH-------HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 467777653 444444553 34444444448888999888888888777777666554
No 143
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=85.73 E-value=7 Score=40.31 Aligned_cols=61 Identities=28% Similarity=0.396 Sum_probs=45.4
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Q 028596 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEAL 101 (207)
Q Consensus 41 ~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~---~rL~~a~ee~~kL~kE~~sL 101 (207)
+..|+..+-+|...|...|.+|+..|.+|.+.-+..|..+. .||....-+|.-|.=|-..|
T Consensus 97 ~~~~l~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~ 160 (769)
T PF05911_consen 97 LSKRLAESAAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVL 160 (769)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666777788888889999999999999999998876 66666666666555444443
No 144
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=85.67 E-value=11 Score=37.74 Aligned_cols=41 Identities=22% Similarity=0.420 Sum_probs=17.3
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (207)
Q Consensus 41 ~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~ 81 (207)
+.+++..++.++..|+..+..-..++.+.+.....++.++.
T Consensus 340 l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~ 380 (594)
T PF05667_consen 340 LESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELK 380 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444443
No 145
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=85.65 E-value=6.4 Score=28.46 Aligned_cols=31 Identities=26% Similarity=0.398 Sum_probs=14.8
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhccccc
Q 028596 100 ALTNTVRKLQRDVSKLEVFRKTLVQSLKDDE 130 (207)
Q Consensus 100 sLa~TVKkL~RDvaKLE~FKk~LmqSLq~D~ 130 (207)
.|..+|...++++.+|+.--+.|...|.+-.
T Consensus 22 ~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 22 ELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445555555556666555555555555543
No 146
>KOG4398 consensus Predicted coiled-coil protein [General function prediction only]
Probab=85.65 E-value=5.9 Score=37.32 Aligned_cols=82 Identities=21% Similarity=0.261 Sum_probs=60.0
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH----HHHH
Q 028596 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDV----SKLE 116 (207)
Q Consensus 41 ~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDv----aKLE 116 (207)
.++|..+||.-|..= -.|...-+..|.+..+.++. |.+|+..-.++..+++.-|.-|-+-|+++.-|| .||+
T Consensus 3 ~k~~~~~~~~~i~k~---nee~~~~~~~~~k~~e~~qk-l~sr~~~~~ekke~i~r~n~k~~d~v~~~~~~~~~~~erl~ 78 (359)
T KOG4398|consen 3 CKMRIEQLKQTICKG---NEEMEKNSEGLLKTKEKNQK-LYSRAQRHQEKKEKIQRHNRKLGDLVEKKTIDLRSHYERLA 78 (359)
T ss_pred hhHHHHHHHHHHhcC---cHHHHHhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhhcchHHHHHHHHHHHHHHHHH
Confidence 456666666555433 23455556666655554443 336888999999999999999999999988764 7999
Q ss_pred HHHHHHHhhc
Q 028596 117 VFRKTLVQSL 126 (207)
Q Consensus 117 ~FKk~LmqSL 126 (207)
+++++-++-|
T Consensus 79 ~lr~shi~el 88 (359)
T KOG4398|consen 79 NLRRSHILEL 88 (359)
T ss_pred HHHHHHHHHH
Confidence 9999987765
No 147
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=85.48 E-value=9.7 Score=41.01 Aligned_cols=42 Identities=21% Similarity=0.354 Sum_probs=38.5
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (207)
Q Consensus 40 A~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~ 81 (207)
+=..|+..|+.++..|+.++++.++.+..|+.++..|..++.
T Consensus 739 ~R~~ri~el~~~IaeL~~~i~~l~~~l~~l~~r~~~L~~e~~ 780 (1353)
T TIGR02680 739 ARLRRIAELDARLAAVDDELAELARELRALGARQRALADELA 780 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445689999999999999999999999999999999999877
No 148
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=85.45 E-value=10 Score=41.38 Aligned_cols=80 Identities=21% Similarity=0.363 Sum_probs=57.1
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH-----
Q 028596 39 IAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVS----- 113 (207)
Q Consensus 39 ~A~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDva----- 113 (207)
+.+..++..++.|+..|+-|+.+-+ ++..++++..|+.... ...-+...+..+...+.+.++++.+++.
T Consensus 1011 ~~l~~q~~e~~re~~~ld~Qi~~~~--~~~~~ee~~~L~~~~~----~l~se~~~~lg~~ke~e~~i~~~k~eL~~~~~k 1084 (1294)
T KOG0962|consen 1011 RNLERKLKELERELSELDKQILEAD--IKSVKEERVKLEEERE----KLSSEKNLLLGEMKQYESQIKKLKQELREKDFK 1084 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHHH----HhhhHhhHHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 3666777777777777777777655 6666666666666665 5556667777788888888888888887
Q ss_pred -HHHHHHHHHHh
Q 028596 114 -KLEVFRKTLVQ 124 (207)
Q Consensus 114 -KLE~FKk~Lmq 124 (207)
..++|++.++.
T Consensus 1085 d~~~nyr~~~ie 1096 (1294)
T KOG0962|consen 1085 DAEKNYRKALIE 1096 (1294)
T ss_pred cHHHHHHHHHHH
Confidence 46677776655
No 149
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=85.43 E-value=5.4 Score=37.21 Aligned_cols=71 Identities=27% Similarity=0.367 Sum_probs=56.3
Q ss_pred HHHHHHHHhhhhhHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 36 ITSIAISTRVSDLESEH-------SALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTV 105 (207)
Q Consensus 36 Its~A~atRVs~LEsE~-------~~LR~~LaEKd~~i~eLq~rvs~Le~~L~---~rL~~a~ee~~kL~kE~~sLa~TV 105 (207)
|.-+|--+|+.+||.|. ..||.+-.|=+.+|.+|-+-|......+. .+|+..+.++..|.+++..+...|
T Consensus 229 lG~q~s~Gria~Le~eLAmQKs~seElkssq~eL~dfm~eLdedVEgmqsTiliLQq~Lketr~~Iq~l~k~~~q~sqav 308 (330)
T KOG2991|consen 229 LGHQASEGRIAELEIELAMQKSQSEELKSSQEELYDFMEELDEDVEGMQSTILILQQKLKETRKEIQRLKKGLEQVSQAV 308 (330)
T ss_pred HHhhhhcccHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34467778999999885 57888888888888888888887777665 888888888888888888777666
Q ss_pred H
Q 028596 106 R 106 (207)
Q Consensus 106 K 106 (207)
+
T Consensus 309 ~ 309 (330)
T KOG2991|consen 309 G 309 (330)
T ss_pred c
Confidence 4
No 150
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=85.34 E-value=4 Score=40.04 Aligned_cols=11 Identities=27% Similarity=0.383 Sum_probs=8.9
Q ss_pred ccccccceeEE
Q 028596 180 SLQTWDFTWLR 190 (207)
Q Consensus 180 ~~~~~~~~~~~ 190 (207)
-|+...|+|=.
T Consensus 194 ~~~~~~f~~~~ 204 (475)
T PRK13729 194 RIQRKTFTYNE 204 (475)
T ss_pred ceeEEEeeccc
Confidence 38999999963
No 151
>PRK04406 hypothetical protein; Provisional
Probab=85.33 E-value=7.3 Score=29.04 Aligned_cols=52 Identities=21% Similarity=0.301 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccc
Q 028596 66 IAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLKD 128 (207)
Q Consensus 66 i~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDvaKLE~FKk~LmqSLq~ 128 (207)
|..|++|+..||..+. .-.+- .+.|..+|-..++++++|+.=-+.|.+.|.+
T Consensus 6 ~~~le~Ri~~LE~~lA----fQE~t-------Ie~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~ 57 (75)
T PRK04406 6 IEQLEERINDLECQLA----FQEQT-------IEELNDALSQQQLLITKMQDQMKYVVGKVKN 57 (75)
T ss_pred HHHHHHHHHHHHHHHH----HHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456666666665554 11111 2233444444455555554444444444443
No 152
>PF11594 Med28: Mediator complex subunit 28; InterPro: IPR021640 Mediator is a large complex of up to 33 proteins that is conserved from plants to fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function []. Subunit Med28 of the Mediator may function as a scaffolding protein within Mediator by maintaining the stability of a submodule within the head module, and components of this submodule act together in a gene-regulatory programme to suppress smooth muscle cell differentiation. Thus, mammalian Mediator subunit Med28 functions as a repressor of smooth muscle-cell differentiation, which could have implications for disorders associated with abnormalities in smooth muscle cell growth and differentiation, including atherosclerosis, asthma, hypertension, and smooth muscle tumours [].
Probab=85.32 E-value=7.4 Score=31.36 Aligned_cols=52 Identities=27% Similarity=0.379 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHhh--------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 30 LDVARKITSIAISTRV--------SDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (207)
Q Consensus 30 LdlArkIts~A~atRV--------s~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~ 81 (207)
||+||+.-+.-+-.|. ..|+-|+..||..|+-|++.+..+.+++...+.-|+
T Consensus 14 lD~aRq~e~~FlqKr~~LS~~kpe~~lkEEi~eLK~ElqRKe~Ll~Kh~~kI~~w~~lL~ 73 (106)
T PF11594_consen 14 LDVARQMEAFFLQKRFELSAYKPEQVLKEEINELKEELQRKEQLLQKHYEKIDYWEKLLS 73 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999988887666664 368899999999999999999999999988887765
No 153
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=85.31 E-value=6.8 Score=28.92 Aligned_cols=36 Identities=33% Similarity=0.469 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 028596 84 LGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFR 119 (207)
Q Consensus 84 L~~a~ee~~kL~kE~~sLa~TVKkL~RDvaKLE~FK 119 (207)
+.+..++..+|.+-.-.+.++||||...+..+|.=-
T Consensus 14 Ia~L~eEGekLSk~el~~~~~IKKLr~~~~e~e~~~ 49 (74)
T PF12329_consen 14 IAQLMEEGEKLSKKELKLNNTIKKLRAKIKELEKQI 49 (74)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 347788888888888888888888888877776443
No 154
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=85.07 E-value=3.7 Score=39.45 Aligned_cols=72 Identities=29% Similarity=0.406 Sum_probs=59.1
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 028596 37 TSIAISTRVSDLESEHSALRSQLAEKD--SRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDV 112 (207)
Q Consensus 37 ts~A~atRVs~LEsE~~~LR~~LaEKd--~~i~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDv 112 (207)
+...+..|+..-|.|+..||.+|..|. ..-.+|+.|+..|...|. +.....+.|..||.+|.-+..++.+.+
T Consensus 356 ~~s~~~~k~~~ke~E~q~lr~~l~~~~~~s~~~elE~rl~~lt~~Li----~KQ~~lE~l~~ek~al~lqlErl~~~l 429 (511)
T PF09787_consen 356 QKSPLQLKLKEKESEIQKLRNQLSARASSSSWNELESRLTQLTESLI----QKQTQLESLGSEKNALRLQLERLETQL 429 (511)
T ss_pred hcChHHHHHHHHHHHHHHHHHHHHHHhccCCcHhHHHHHhhccHHHH----HHHHHHHHHHhhhhhccccHHHHHHHH
Confidence 455788899999999999999999887 334689999999988888 777788899999999988777665543
No 155
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=85.06 E-value=26 Score=32.01 Aligned_cols=40 Identities=23% Similarity=0.307 Sum_probs=24.4
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 42 STRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (207)
Q Consensus 42 atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~ 81 (207)
..-+..++.|+..|...-.+..+++.+|++....++.++.
T Consensus 42 ~~~~~~~~~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~ 81 (314)
T PF04111_consen 42 EEDIEELEEELEKLEQEEEELLQELEELEKEREELDQELE 81 (314)
T ss_dssp HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666666666666666666666666665
No 156
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=85.06 E-value=13 Score=34.08 Aligned_cols=65 Identities=17% Similarity=0.333 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 028596 50 SEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSK 114 (207)
Q Consensus 50 sE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~---~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDvaK 114 (207)
.|....+.++..+..++..+++.+...|.+++ .|+....++..+|..|...|..+|..+.--|.|
T Consensus 193 ~eke~~~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~e~~~rl~~l~~~~~~l~k~~~~~~sKV~k 260 (269)
T PF05278_consen 193 EEKEEKDRKLELKKEELEELEEELKQKEKEVKEIKERITEMKGRLGELEMESTRLSKTIKSIKSKVEK 260 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444445555555554 555556666666666666666666666544443
No 157
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=85.01 E-value=7.6 Score=37.46 Aligned_cols=45 Identities=27% Similarity=0.324 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH-----HHHHHHHHhhccc
Q 028596 84 LGQAQADKERLSKENEALTNTVRKLQRDVSKL-----EVFRKTLVQSLKD 128 (207)
Q Consensus 84 L~~a~ee~~kL~kE~~sLa~TVKkL~RDvaKL-----E~FKk~LmqSLq~ 128 (207)
+....++..+|.++.+.+...+.++...+++. +.|.+.+..-|++
T Consensus 341 l~~~~~~le~L~~el~~l~~~l~~~a~~Ls~~R~~~a~~l~~~v~~~l~~ 390 (563)
T TIGR00634 341 LDDSDESLEALEEEVDKLEEELDKAAVALSLIRRKAAERLAKRVEQELKA 390 (563)
T ss_pred HhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444566777778888888888888777777 6777777766654
No 158
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=84.90 E-value=11 Score=35.20 Aligned_cols=66 Identities=15% Similarity=0.283 Sum_probs=32.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028596 44 RVSDLESEHSALRSQLAEKDSRIAEL------------QSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRD 111 (207)
Q Consensus 44 RVs~LEsE~~~LR~~LaEKd~~i~eL------------q~rvs~Le~~L~~rL~~a~ee~~kL~kE~~sLa~TVKkL~RD 111 (207)
.++.++.++..|+.++++....+.++ +.|+..+.... +..+.++..++..+.+.+...+.+....
T Consensus 237 ~~~~~~~~i~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~l~~~~~~l~~~~~~l~~a~~~ 313 (457)
T TIGR01000 237 ILATIQQQIDQLQKSIASYQVQKAGLTKSTASNYASSQNSKLAQLKEQQ---LAKVKQEITDLNQKLLELESKIKSLKED 313 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCccchhhhhhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666555554 33333332222 2344444455555555555555444444
Q ss_pred H
Q 028596 112 V 112 (207)
Q Consensus 112 v 112 (207)
+
T Consensus 314 l 314 (457)
T TIGR01000 314 S 314 (457)
T ss_pred H
Confidence 3
No 159
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=84.89 E-value=8.8 Score=30.39 Aligned_cols=26 Identities=27% Similarity=0.426 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028596 85 GQAQADKERLSKENEALTNTVRKLQR 110 (207)
Q Consensus 85 ~~a~ee~~kL~kE~~sLa~TVKkL~R 110 (207)
....++|+.|.-||..|-..+.++..
T Consensus 32 ~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 32 QELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 37888999999999988887777665
No 160
>KOG4687 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=84.85 E-value=4.5 Score=38.17 Aligned_cols=52 Identities=23% Similarity=0.390 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 028596 65 RIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLE 116 (207)
Q Consensus 65 ~i~eLq~rvs~Le~~L~---~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDvaKLE 116 (207)
+|.+|..+.+.+.+-++ +.++...|+.+|...|++-|+..+..|.+.++.||
T Consensus 10 ~iae~k~e~sAlhqK~~aKtdairiL~QdLEkfe~Ekd~~a~~aETLeln~eale 64 (389)
T KOG4687|consen 10 EIAELKKEFSALHQKCGAKTDAIRILGQDLEKFENEKDGLAARAETLELNLEALE 64 (389)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 44444444444444444 44444445555555555555555555555444443
No 161
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=84.83 E-value=9.7 Score=32.40 Aligned_cols=25 Identities=12% Similarity=0.191 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHH
Q 028596 94 LSKENEALTNTVRKLQRDVSKLEVF 118 (207)
Q Consensus 94 L~kE~~sLa~TVKkL~RDvaKLE~F 118 (207)
++.++......|..|.+.-..|+.+
T Consensus 161 ~~~~~k~~~~ei~~lk~~~~ql~~~ 185 (189)
T PF10211_consen 161 RQEEEKKHQEEIDFLKKQNQQLKAQ 185 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555566666666666555554
No 162
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.76 E-value=9.3 Score=34.94 Aligned_cols=22 Identities=27% Similarity=0.557 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhHH
Q 028596 92 ERLSKENEALTNTVRKLQRDVS 113 (207)
Q Consensus 92 ~kL~kE~~sLa~TVKkL~RDva 113 (207)
..+.+|++.+-.-+|+|+.+++
T Consensus 69 ~~~~~~i~~~~~eik~l~~eI~ 90 (265)
T COG3883 69 DELQKEIDQSKAEIKKLQKEIA 90 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 163
>PRK02793 phi X174 lysis protein; Provisional
Probab=84.71 E-value=7.2 Score=28.72 Aligned_cols=28 Identities=29% Similarity=0.330 Sum_probs=13.7
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhccc
Q 028596 101 LTNTVRKLQRDVSKLEVFRKTLVQSLKD 128 (207)
Q Consensus 101 La~TVKkL~RDvaKLE~FKk~LmqSLq~ 128 (207)
|...|...+++++.|+.--+.|.+.|.+
T Consensus 27 Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~ 54 (72)
T PRK02793 27 LNVTVTAHEMEMAKLRDHLRLLTEKLKA 54 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444455555555544555555544
No 164
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=84.50 E-value=20 Score=35.26 Aligned_cols=36 Identities=22% Similarity=0.311 Sum_probs=23.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 46 SDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (207)
Q Consensus 46 s~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~ 81 (207)
-.|++|.+.++.++.+|+.++.+||+....+-.++.
T Consensus 37 ~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~~v 72 (459)
T KOG0288|consen 37 VILRAESRAIKAKLQEKELELNRLQEENTQLNEERV 72 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356667777777777777777777766666555444
No 165
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=84.50 E-value=9.1 Score=32.72 Aligned_cols=20 Identities=40% Similarity=0.579 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHhhhHHH
Q 028596 95 SKENEALTNTVRKLQRDVSK 114 (207)
Q Consensus 95 ~kE~~sLa~TVKkL~RDvaK 114 (207)
...|+.|..-+.||..|+.+
T Consensus 94 ~~~N~~L~~dl~klt~~~~~ 113 (182)
T PF15035_consen 94 RKANEALQEDLQKLTQDWER 113 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45555666666666666655
No 166
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=84.46 E-value=8.1 Score=41.49 Aligned_cols=68 Identities=19% Similarity=0.352 Sum_probs=53.4
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028596 38 SIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQ 109 (207)
Q Consensus 38 s~A~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~~sLa~TVKkL~ 109 (207)
+.+++.-..-||+-|+.||++|.||.....+|+.-+..++.++. ..++++..+..|..+...-.++|.
T Consensus 172 ~~hL~velAdle~kir~LrqElEEK~enll~lr~eLddleae~~----klrqe~~e~l~ea~ra~~yrdeld 239 (1195)
T KOG4643|consen 172 NLHLEVELADLEKKIRTLRQELEEKFENLLRLRNELDDLEAEIS----KLRQEIEEFLDEAHRADRYRDELD 239 (1195)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhhhhhhhHHH
Confidence 45888888999999999999999999999999999999888886 666666666666555444444443
No 167
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=84.38 E-value=4 Score=39.36 Aligned_cols=57 Identities=18% Similarity=0.214 Sum_probs=43.7
Q ss_pred CchhhHHHHHHHHHH-HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 25 DPFEQLDVARKITSI-AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (207)
Q Consensus 25 DP~EQLdlArkIts~-A~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~ 81 (207)
+|.+|+++--.+... .+..++..+..+...++++|.+......++++++..++.++.
T Consensus 142 ~~~~~~~lLD~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~eld~L~~ql~ 199 (563)
T TIGR00634 142 RPDEQRQLLDTFAGANEKVKAYRELYQAWLKARQQLKDRQQKEQELAQRLDFLQFQLE 199 (563)
T ss_pred CHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence 888998887777653 577778888888888888888777777777777777777765
No 168
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=84.31 E-value=11 Score=39.44 Aligned_cols=38 Identities=32% Similarity=0.404 Sum_probs=28.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 44 RVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (207)
Q Consensus 44 RVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~ 81 (207)
.|+.|++|..+|++.|..|.+.-..+++-|..+.+++-
T Consensus 496 ~i~~L~sE~~~lk~il~~Kee~Ek~~~E~I~k~~ae~~ 533 (961)
T KOG4673|consen 496 LITKLQSEENKLKSILRDKEETEKLLQETIEKHQAELT 533 (961)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 68889999999999999888766666655555555543
No 169
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=84.22 E-value=11 Score=38.37 Aligned_cols=55 Identities=18% Similarity=0.323 Sum_probs=30.6
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 53 SALRSQL-AEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRK 107 (207)
Q Consensus 53 ~~LR~~L-aEKd~~i~eLq~rvs~Le~~L~---~rL~~a~ee~~kL~kE~~sLa~TVKk 107 (207)
..||.+- ..-+..-.++++|+..|..+.. .+|..+.++..+|+..-..|+...+.
T Consensus 546 ~vlreeYi~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L~~l~e~~~~l~~~ae~LaeR~e~ 604 (717)
T PF10168_consen 546 KVLREEYIEKQDLAREEIQRRVKLLKQQKEQQLKELQELQEERKSLRESAEKLAERYEE 604 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566663 3334446778888887777776 44444444444444444444443333
No 170
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=84.04 E-value=31 Score=36.77 Aligned_cols=42 Identities=29% Similarity=0.488 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH-----------HHHHHHHHHh
Q 028596 83 KLGQAQADKERLSKENEALTNTVRKLQRDVSK-----------LEVFRKTLVQ 124 (207)
Q Consensus 83 rL~~a~ee~~kL~kE~~sLa~TVKkL~RDvaK-----------LE~FKk~Lmq 124 (207)
.+..+.+.+.+..++|.+|..++.++.|.... ||.||+.|..
T Consensus 453 Qle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~ 505 (980)
T KOG0980|consen 453 QLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELAL 505 (980)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 34455566667778888888888777766554 6666666654
No 171
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=83.98 E-value=20 Score=36.66 Aligned_cols=71 Identities=24% Similarity=0.392 Sum_probs=34.1
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 028596 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDV 112 (207)
Q Consensus 41 ~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDv 112 (207)
+-.++..+|.-+.+|+....+=.+.+.+|++.++.|+..|. +++.-........+|-..+...+.+|++.+
T Consensus 420 ~~~~i~~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~-~~~r~~~~~~~~~rei~~~~~~I~~L~~~L 490 (652)
T COG2433 420 YEKRIKKLEETVERLEEENSELKRELEELKREIEKLESELE-RFRREVRDKVRKDREIRARDRRIERLEKEL 490 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 44455555555555555555555555555555555555552 333333333333444444444444444443
No 172
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=83.80 E-value=9.3 Score=32.54 Aligned_cols=30 Identities=20% Similarity=0.366 Sum_probs=16.3
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 028596 40 AISTRVSDLESEHSALRSQLAEKDSRIAEL 69 (207)
Q Consensus 40 A~atRVs~LEsE~~~LR~~LaEKd~~i~eL 69 (207)
+...++.+|..++..++.++.+-...|..+
T Consensus 66 ~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~ 95 (188)
T PF03962_consen 66 KRQNKLEKLQKEIEELEKKIEELEEKIEEA 95 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555566666665555555555444
No 173
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=83.78 E-value=20 Score=28.46 Aligned_cols=30 Identities=33% Similarity=0.431 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 52 HSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (207)
Q Consensus 52 ~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~ 81 (207)
+..||.++.+-...|.+|+..+..+...|.
T Consensus 61 L~~lr~e~~~~~~~~~~l~~~~~~a~~~l~ 90 (132)
T PF07926_consen 61 LQQLREELQELQQEINELKAEAESAKAELE 90 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555555544444
No 174
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=83.72 E-value=10 Score=33.51 Aligned_cols=63 Identities=11% Similarity=0.169 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 028596 49 ESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKL 115 (207)
Q Consensus 49 EsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDvaKL 115 (207)
|..+.+|-+.+.-....+.+|+.|+..|+.++. ..+-.++.++-+.+.+...-|.|..|+..+
T Consensus 39 ~~r~~~le~~~~~~~~~~~~l~~ql~~lq~ev~----~LrG~~E~~~~~l~~~~~rq~~~y~dld~r 101 (263)
T PRK10803 39 EDRVTQLERISNAHSQLLTQLQQQLSDNQSDID----SLRGQIQENQYQLNQVVERQKQIYLQIDSL 101 (263)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH----HHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333434444444555666666666666665 445555566666666666667777777664
No 175
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=83.43 E-value=12 Score=33.12 Aligned_cols=68 Identities=28% Similarity=0.380 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 028596 50 SEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEV 117 (207)
Q Consensus 50 sE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~---~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDvaKLE~ 117 (207)
+||-.||.+|.+-.......+.++..|..++. .-|.....+......|...|-..+-+|..+++.|..
T Consensus 31 ~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~ELE~ce~ELqr~~~Ea~lLrekl~~le~El~~Lr~ 101 (202)
T PF06818_consen 31 SEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLELEVCENELQRKKNEAELLREKLGQLEAELAELRE 101 (202)
T ss_pred hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHhHHHhHHHHHHHhCHHHHhhhhhhhhHHHHHHHHH
Confidence 45556666655555555555555555555554 334466666666677777777777777777776644
No 176
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=83.18 E-value=16 Score=33.53 Aligned_cols=22 Identities=27% Similarity=0.428 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 028596 86 QAQADKERLSKENEALTNTVRK 107 (207)
Q Consensus 86 ~a~ee~~kL~kE~~sLa~TVKk 107 (207)
...++..+|.++.+.|.++++.
T Consensus 77 ~~~~eik~l~~eI~~~~~~I~~ 98 (265)
T COG3883 77 QSKAEIKKLQKEIAELKENIVE 98 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444444443
No 177
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=83.10 E-value=17 Score=27.74 Aligned_cols=26 Identities=27% Similarity=0.449 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 82 DKLGQAQADKERLSKENEALTNTVRK 107 (207)
Q Consensus 82 ~rL~~a~ee~~kL~kE~~sLa~TVKk 107 (207)
.+|-.+..++++|..-+..++..++.
T Consensus 53 ~eLD~~~ar~~~Le~~~~Evs~rL~~ 78 (89)
T PF13747_consen 53 QELDQAEARANRLEEANREVSRRLDS 78 (89)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 33345555555555555555544443
No 178
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=83.09 E-value=38 Score=31.72 Aligned_cols=39 Identities=18% Similarity=0.287 Sum_probs=26.7
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYS 78 (207)
Q Consensus 40 A~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~ 78 (207)
.+.+|...+++++..+.+++...+..+..++.....++.
T Consensus 162 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 200 (457)
T TIGR01000 162 KSQTQNEAAEKTKAQLDQQISKTDQKLQDYQALKNAISN 200 (457)
T ss_pred hhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455667777777777777777777777776666664444
No 179
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=83.04 E-value=8.9 Score=27.72 Aligned_cols=27 Identities=11% Similarity=0.187 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 028596 86 QAQADKERLSKENEALTNTVRKLQRDV 112 (207)
Q Consensus 86 ~a~ee~~kL~kE~~sLa~TVKkL~RDv 112 (207)
...+...+.+++.+.|...++.|...+
T Consensus 22 ~Ln~~v~~Qq~~I~~L~~~l~~L~~rl 48 (69)
T PF04102_consen 22 ELNDVVTEQQRQIDRLQRQLRLLRERL 48 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444433
No 180
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=83.02 E-value=16 Score=34.17 Aligned_cols=42 Identities=19% Similarity=0.362 Sum_probs=21.6
Q ss_pred CCCCChHHHHhhCCCCch-hhHHHHHHHHHHHHHHhhhhhHHHHHHH
Q 028596 10 STFDLPEEVLQVLPSDPF-EQLDVARKITSIAISTRVSDLESEHSAL 55 (207)
Q Consensus 10 ~~f~Lp~eilsvLP~DP~-EQLdlArkIts~A~atRVs~LEsE~~~L 55 (207)
+||+.=+-|=..+|+-.= .+||--+ ..+..++..|+.||..+
T Consensus 2 ~dfdpv~~in~lfp~e~SL~~ld~~i----~~l~~~i~~ld~eI~~~ 44 (383)
T PF04100_consen 2 PDFDPVDYINELFPDEQSLSNLDELI----AKLRKEIRELDEEIKEL 44 (383)
T ss_pred CCCCHHHHHHHhCCChHHHHhHHHHH----HHHHHHHHHHHHHHHHH
Confidence 366666667777776321 3333322 34444555555555543
No 181
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=82.96 E-value=31 Score=32.22 Aligned_cols=86 Identities=19% Similarity=0.333 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHH---HHHHHHHHHHHHHH
Q 028596 30 LDVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESI-----------YSSLS---DKLGQAQADKERLS 95 (207)
Q Consensus 30 LdlArkIts~A~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~L-----------e~~L~---~rL~~a~ee~~kL~ 95 (207)
+.+-..|...++..|+..||.|-..||.....=......++++-..| -..+. .=|....+++...+
T Consensus 154 ~~~~~~~~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQ 233 (306)
T PF04849_consen 154 LSSQKCIQLEALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQ 233 (306)
T ss_pred cccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHH
Confidence 33444566678999999999999999987664443333333332222 11111 22335555556666
Q ss_pred HHHHHHHHHHHHHhhhHHHH
Q 028596 96 KENEALTNTVRKLQRDVSKL 115 (207)
Q Consensus 96 kE~~sLa~TVKkL~RDvaKL 115 (207)
+|-.+|..+|-.|++-+..+
T Consensus 234 EEIt~LlsqivdlQ~r~k~~ 253 (306)
T PF04849_consen 234 EEITSLLSQIVDLQQRCKQL 253 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 66666666665555555443
No 182
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=82.94 E-value=12 Score=33.79 Aligned_cols=80 Identities=24% Similarity=0.339 Sum_probs=44.6
Q ss_pred HhhhhhHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhh
Q 028596 43 TRVSDLESEHSALRSQLA-------EKDSRIAELQSQIESIYSSLSDKLGQAQADKERLS----KENEALTNTVRKLQRD 111 (207)
Q Consensus 43 tRVs~LEsE~~~LR~~La-------EKd~~i~eLq~rvs~Le~~L~~rL~~a~ee~~kL~----kE~~sLa~TVKkL~RD 111 (207)
+-++.|+.+...++.+++ +..-.+..|+.++..|+.++.. +..++. ............|.||
T Consensus 214 ~~i~~L~~~l~~~~~~l~~l~~~~~~~~P~v~~l~~~i~~l~~~i~~-------e~~~i~~~~~~~l~~~~~~~~~L~re 286 (362)
T TIGR01010 214 SLISTLEGELIRVQAQLAQLRSITPEQNPQVPSLQARIKSLRKQIDE-------QRNQLSGGLGDSLNEQTADYQRLVLQ 286 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCCCCchHHHHHHHHHHHHHHHH-------HHHHhhcCCCccHHHHHHHHHHHHHH
Confidence 334444444444444444 3344566777777777777761 111111 1234445567788888
Q ss_pred HHHHHHHHHHHHhhcccc
Q 028596 112 VSKLEVFRKTLVQSLKDD 129 (207)
Q Consensus 112 vaKLE~FKk~LmqSLq~D 129 (207)
+.--+..=..+++.+++-
T Consensus 287 ~~~a~~~y~~~l~r~~~a 304 (362)
T TIGR01010 287 NELAQQQLKAALTSLQQT 304 (362)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 887666666666666543
No 183
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=82.94 E-value=3.1 Score=38.67 Aligned_cols=30 Identities=20% Similarity=0.417 Sum_probs=0.8
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 028596 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQ 70 (207)
Q Consensus 41 ~atRVs~LEsE~~~LR~~LaEKd~~i~eLq 70 (207)
+..++..|..|+..++....+.-..|..+.
T Consensus 103 l~~~~~elkkEie~IKk~q~e~~~~i~~~~ 132 (370)
T PF02994_consen 103 LKKRIKELKKEIENIKKNQSEMKLEIENLK 132 (370)
T ss_dssp ---------------H--------------
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 456667777788888765555444444333
No 184
>TIGR02559 HrpB7 type III secretion protein HrpB7. This family of genes is found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia.
Probab=82.89 E-value=24 Score=30.28 Aligned_cols=64 Identities=17% Similarity=0.240 Sum_probs=53.1
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHH
Q 028596 37 TSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS------DKLGQAQADKERLSKENEA 100 (207)
Q Consensus 37 ts~A~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~------~rL~~a~ee~~kL~kE~~s 100 (207)
-.-.+.-++..+|.+...|++-|..|...|+..+..+..++..+. ++|..+.|.......+-+.
T Consensus 80 yr~vl~~~~~~aE~~~aaa~~al~~~~~~laa~~r~iaRn~a~id~c~eR~~~l~ra~ea~~edA~dEEa 149 (158)
T TIGR02559 80 YRDVLEAHLGAAEQAEAAARAALQALAAALAAKKREIARLDAQIDVCRERAERLRRAGEAAREEALEEEA 149 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 334567889999999999999999999999999999999999998 7777777776666555443
No 185
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=82.78 E-value=47 Score=35.97 Aligned_cols=85 Identities=24% Similarity=0.335 Sum_probs=52.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HH---HHHHH-HHHHHHHHHHHHHHHHHHHHhhhH
Q 028596 44 RVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS-------DK---LGQAQ-ADKERLSKENEALTNTVRKLQRDV 112 (207)
Q Consensus 44 RVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~-------~r---L~~a~-ee~~kL~kE~~sLa~TVKkL~RDv 112 (207)
.|..=|.||..||..+-=|.+...+++=|..-+|..|. .+ +.+.. +-...|.+--..+..|+..|++|+
T Consensus 956 tle~re~eikeLkk~aKmkqeelSe~qvRldmaEkkLss~~k~~~h~v~~~~ek~ee~~a~lr~Ke~efeetmdaLq~di 1035 (1243)
T KOG0971|consen 956 TLEDRETEIKELKKSAKMKQEELSEAQVRLDLAEKKLSSAAKDADHRVEKVQEKLEETQALLRKKEKEFEETMDALQADI 1035 (1243)
T ss_pred hHHhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555555555555555555554 22 22222 223445555667889999999999
Q ss_pred HHHHHHHHHHHhhccc
Q 028596 113 SKLEVFRKTLVQSLKD 128 (207)
Q Consensus 113 aKLE~FKk~LmqSLq~ 128 (207)
.-||.=|-.|=|.|+.
T Consensus 1036 ~~lEsek~elKqrl~~ 1051 (1243)
T KOG0971|consen 1036 DQLESEKAELKQRLNS 1051 (1243)
T ss_pred HHHHhhHHHHHHHhhh
Confidence 9999999999888865
No 186
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=82.78 E-value=27 Score=34.33 Aligned_cols=74 Identities=24% Similarity=0.394 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHhhh---------HHHH
Q 028596 53 SALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTV--------RKLQRD---------VSKL 115 (207)
Q Consensus 53 ~~LR~~LaEKd~~i~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~~sLa~TV--------KkL~RD---------vaKL 115 (207)
..++..+.+-.....+|+.++.........++....+-..+|..+-.+|++.+ ...|+. =..|
T Consensus 70 ~~~~~~~~~~~~~~~~l~~~le~~~~~~~ek~~~l~~~~~~L~~~F~~LA~~ile~k~~~f~~~~~~~l~~ll~Pl~e~l 149 (475)
T PRK10361 70 RSLQSINTSLEADLREVTTRMEAAQQHADDKIRQMINSEQRLSEQFENLANRIFEHSNRRVDEQNRQSLNSLLSPLREQL 149 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 33333333333333333333333333333555566666667777777777643 111221 1357
Q ss_pred HHHHHHHHhhc
Q 028596 116 EVFRKTLVQSL 126 (207)
Q Consensus 116 E~FKk~LmqSL 126 (207)
+.|++.+-.+-
T Consensus 150 ~~f~~~v~~~~ 160 (475)
T PRK10361 150 DGFRRQVQDSF 160 (475)
T ss_pred HHHHHHHHHHH
Confidence 78888776543
No 187
>COG1322 Predicted nuclease of restriction endonuclease-like fold, RmuC family [General function prediction only]
Probab=82.76 E-value=42 Score=32.71 Aligned_cols=15 Identities=40% Similarity=0.667 Sum_probs=9.4
Q ss_pred HHHHHHHHHhhcccc
Q 028596 115 LEVFRKTLVQSLKDD 129 (207)
Q Consensus 115 LE~FKk~LmqSLq~D 129 (207)
++.|+++|-+++...
T Consensus 141 ~e~f~e~l~~~~~~s 155 (448)
T COG1322 141 LEKFREQLEQRIHES 155 (448)
T ss_pred HHHHHHHHHHHHHHH
Confidence 667777776655443
No 188
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=82.73 E-value=34 Score=30.32 Aligned_cols=42 Identities=21% Similarity=0.380 Sum_probs=22.9
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (207)
Q Consensus 40 A~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~ 81 (207)
.+..+...+.+++..++.++..-...+..++.++..++.++.
T Consensus 134 ~~~~~~~~~~~~~~~l~~~i~~~~~~i~~~~~~l~~~~~~l~ 175 (423)
T TIGR01843 134 LFESRKSTLRAQLELILAQIKQLEAELAGLQAQLQALRQQLE 175 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555555555555555554
No 189
>PRK00846 hypothetical protein; Provisional
Probab=82.57 E-value=9.5 Score=28.98 Aligned_cols=30 Identities=10% Similarity=0.150 Sum_probs=14.1
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhccccc
Q 028596 101 LTNTVRKLQRDVSKLEVFRKTLVQSLKDDE 130 (207)
Q Consensus 101 La~TVKkL~RDvaKLE~FKk~LmqSLq~D~ 130 (207)
|..+|.+.++.+++|..--+.|..-|.+-.
T Consensus 32 LN~~v~~qq~~I~~L~~ql~~L~~rL~~~~ 61 (77)
T PRK00846 32 LSEALADARLTGARNAELIRHLLEDLGKVR 61 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 334444444555555444444444444433
No 190
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=82.57 E-value=8.7 Score=26.77 Aligned_cols=35 Identities=31% Similarity=0.485 Sum_probs=24.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 028596 86 QAQADKERLSKENEALTNTVRKLQRDVSKLEVFRK 120 (207)
Q Consensus 86 ~a~ee~~kL~kE~~sLa~TVKkL~RDvaKLE~FKk 120 (207)
....++++|.+|++.|...++.|..|-+.+|.+=|
T Consensus 28 ~l~~~i~~l~~e~~~L~~ei~~l~~~~~~ie~~AR 62 (80)
T PF04977_consen 28 ELQKEIEELKKENEELKEEIERLKNDPDYIEKVAR 62 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 44555566777777777777777667777777666
No 191
>PRK01156 chromosome segregation protein; Provisional
Probab=82.55 E-value=28 Score=35.05 Aligned_cols=10 Identities=30% Similarity=0.285 Sum_probs=3.6
Q ss_pred HHHHHHHHHH
Q 028596 94 LSKENEALTN 103 (207)
Q Consensus 94 L~kE~~sLa~ 103 (207)
|..+...|..
T Consensus 700 l~~~i~~l~~ 709 (895)
T PRK01156 700 LESTIEILRT 709 (895)
T ss_pred HHHHHHHHHh
Confidence 3333333333
No 192
>PF09486 HrpB7: Bacterial type III secretion protein (HrpB7); InterPro: IPR013392 This entry represents proteins encoded by genes which are found in type III secretion operons in a narrow range of species including Xanthomonas, Burkholderia and Ralstonia.
Probab=82.46 E-value=12 Score=31.58 Aligned_cols=54 Identities=26% Similarity=0.327 Sum_probs=44.6
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHH
Q 028596 39 IAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS------DKLGQAQADKE 92 (207)
Q Consensus 39 ~A~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~------~rL~~a~ee~~ 92 (207)
--+.-|+..+|.+...|++.|..|...|...+..|..++..+. ++|..+.+...
T Consensus 82 ~~l~~~~~~~e~~~a~l~~~l~~~~~~ia~~~raIarn~a~id~~~er~~~l~r~~ea~~ 141 (158)
T PF09486_consen 82 DVLEERVRAAEAELAALRQALRAAEDEIAATRRAIARNDARIDVCRERIDRLRRAAEAAA 141 (158)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhH
Confidence 3467799999999999999999999999999999999999887 44444444443
No 193
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=82.38 E-value=17 Score=37.62 Aligned_cols=85 Identities=19% Similarity=0.232 Sum_probs=60.3
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HH---HHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 028596 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESI---YS---SLS-DKLGQAQADKERLSKENEALTNTVRKLQRDV 112 (207)
Q Consensus 40 A~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~L---e~---~L~-~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDv 112 (207)
+|-++...=-.|++.||.+++||+..+..|++++..- +. .++ .+|+.+.+..+.-.++++....-.+.+....
T Consensus 228 qye~klkstk~e~a~L~Eq~~eK~~e~~rl~~~lv~~~~~d~e~~~~rd~~lk~a~eslm~ane~kdr~ie~lr~~ln~y 307 (861)
T KOG1899|consen 228 QYETKLKSTKGEMAPLREQRSEKNDEEMRLLRTLVQRLMADGEHKSLRDNTLKNALESLMRANEQKDRFIESLRNYLNNY 307 (861)
T ss_pred HHHhhcccccchhhhHHHHHhhhhhHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHhhchhhhhHHHHHHHHhhhh
Confidence 5555555555679999999999999999998776532 22 222 7888888888888888888877777776666
Q ss_pred HHHHHHHHHHHh
Q 028596 113 SKLEVFRKTLVQ 124 (207)
Q Consensus 113 aKLE~FKk~Lmq 124 (207)
.|.....+-+|.
T Consensus 308 ~k~~~iv~i~qg 319 (861)
T KOG1899|consen 308 DKNAQIVRILQG 319 (861)
T ss_pred hhhhhhhhhhcC
Confidence 665555554443
No 194
>PRK00106 hypothetical protein; Provisional
Probab=82.32 E-value=51 Score=32.80 Aligned_cols=12 Identities=8% Similarity=0.285 Sum_probs=6.5
Q ss_pred HHHHHHhhcccc
Q 028596 118 FRKTLVQSLKDD 129 (207)
Q Consensus 118 FKk~LmqSLq~D 129 (207)
.|..||..+.++
T Consensus 170 ak~~l~~~~~~~ 181 (535)
T PRK00106 170 AREIILAETENK 181 (535)
T ss_pred HHHHHHHHHHHH
Confidence 455555555544
No 195
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=82.19 E-value=10 Score=30.88 Aligned_cols=42 Identities=31% Similarity=0.441 Sum_probs=25.0
Q ss_pred HHHHhhhhhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Q 028596 40 AISTRVSDLESEHSALRSQLA--EKDSRIAELQSQIESIYSSLS 81 (207)
Q Consensus 40 A~atRVs~LEsE~~~LR~~La--EKd~~i~eLq~rvs~Le~~L~ 81 (207)
.+...++.|++|...|+..+. |-...|.+|+..+..++..|.
T Consensus 90 ~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~ 133 (169)
T PF07106_consen 90 ELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLE 133 (169)
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666666666653 455555666655555555553
No 196
>PRK01156 chromosome segregation protein; Provisional
Probab=82.17 E-value=24 Score=35.57 Aligned_cols=18 Identities=17% Similarity=0.508 Sum_probs=8.2
Q ss_pred HHHhhhHHHHHHHHHHHH
Q 028596 106 RKLQRDVSKLEVFRKTLV 123 (207)
Q Consensus 106 KkL~RDvaKLE~FKk~Lm 123 (207)
+++..-+..|+.|++.|.
T Consensus 729 ~~~~~~~~~l~~~r~~l~ 746 (895)
T PRK01156 729 KKIKKAIGDLKRLREAFD 746 (895)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 344444444455544443
No 197
>PF08647 BRE1: BRE1 E3 ubiquitin ligase; InterPro: IPR013956 BRE1 is an E3 ubiquitin ligase that has been shown to act as a transcriptional activator through direct activator interactions [].
Probab=82.08 E-value=20 Score=27.31 Aligned_cols=36 Identities=14% Similarity=0.196 Sum_probs=20.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 46 SDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (207)
Q Consensus 46 s~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~ 81 (207)
..||..+.+|-...+.-|+.+.++.+....|..++.
T Consensus 27 ~~lE~k~~rl~~Ek~kadqkyfa~mr~~d~l~~e~k 62 (96)
T PF08647_consen 27 TILEQKKLRLEAEKAKADQKYFAAMRSKDALDNEMK 62 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 345555555555555555666666666666666554
No 198
>PRK04863 mukB cell division protein MukB; Provisional
Probab=82.08 E-value=23 Score=39.10 Aligned_cols=21 Identities=29% Similarity=0.365 Sum_probs=11.3
Q ss_pred HHHHhhhhhHHHHHHHHHHHH
Q 028596 40 AISTRVSDLESEHSALRSQLA 60 (207)
Q Consensus 40 A~atRVs~LEsE~~~LR~~La 60 (207)
.+..|+..|+.++...+..+.
T Consensus 318 ELe~rL~kLEkQaEkA~kyle 338 (1486)
T PRK04863 318 ELNEAESDLEQDYQAASDHLN 338 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555555554444
No 199
>PF14932 HAUS-augmin3: HAUS augmin-like complex subunit 3
Probab=82.07 E-value=31 Score=30.42 Aligned_cols=39 Identities=26% Similarity=0.181 Sum_probs=26.9
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 43 TRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (207)
Q Consensus 43 tRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~ 81 (207)
..|..||.|+..|+.....+...+..|+...+.+...+.
T Consensus 68 ~~le~Le~el~~l~~~~~~~~~~~~~lq~~~~~~~~~~~ 106 (256)
T PF14932_consen 68 EDLEALEEELEALQEYKELYEQLRNKLQQLDSSLSQELS 106 (256)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456678888888877777777777777765555554443
No 200
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=82.03 E-value=7.8 Score=34.31 Aligned_cols=61 Identities=20% Similarity=0.322 Sum_probs=25.8
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Q 028596 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEA 100 (207)
Q Consensus 40 A~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~---~rL~~a~ee~~kL~kE~~s 100 (207)
+...||..||..+..-.+.+.|-...|.+||..|..|-..+. -.|.+..+++..|-.+-|.
T Consensus 37 ~~~~r~~~le~~~~~~~~~~~~l~~ql~~lq~ev~~LrG~~E~~~~~l~~~~~rq~~~y~dld~ 100 (263)
T PRK10803 37 SVEDRVTQLERISNAHSQLLTQLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQIYLQIDS 100 (263)
T ss_pred chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666655543333333333333333333333333333 2222444444444444443
No 201
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=81.97 E-value=27 Score=34.05 Aligned_cols=90 Identities=22% Similarity=0.414 Sum_probs=57.0
Q ss_pred HHHHhhhhhHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHH
Q 028596 40 AISTRVSDLESEHSALRSQ-----LAEKDSRIAELQSQIESIYSSLS-----------------DKLGQAQADKERLSKE 97 (207)
Q Consensus 40 A~atRVs~LEsE~~~LR~~-----LaEKd~~i~eLq~rvs~Le~~L~-----------------~rL~~a~ee~~kL~kE 97 (207)
.+.+++..|..++...... |.+-...+..+++++..|...+. ..|.++.+.+..|..|
T Consensus 253 ~i~~~i~~l~~~i~~~~~~l~~l~l~~~~~~~~~i~~~Id~Lyd~lekE~~A~~~vek~~~~l~~~l~~~~e~~~~l~~E 332 (569)
T PRK04778 253 DIEKEIQDLKEQIDENLALLEELDLDEAEEKNEEIQERIDQLYDILEREVKARKYVEKNSDTLPDFLEHAKEQNKELKEE 332 (569)
T ss_pred ChHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444442222 22334445555555555544443 5567888888999999
Q ss_pred HHHHHHH----------HHHHhhhHHHHHHHHHHHHhhcccc
Q 028596 98 NEALTNT----------VRKLQRDVSKLEVFRKTLVQSLKDD 129 (207)
Q Consensus 98 ~~sLa~T----------VKkL~RDvaKLE~FKk~LmqSLq~D 129 (207)
-+.|... ++.+..++..|+.=-+.+...+...
T Consensus 333 i~~l~~sY~l~~~e~~~~~~lekeL~~Le~~~~~~~~~i~~~ 374 (569)
T PRK04778 333 IDRVKQSYTLNESELESVRQLEKQLESLEKQYDEITERIAEQ 374 (569)
T ss_pred HHHHHHccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 9999888 8889888888887777666665544
No 202
>TIGR03495 phage_LysB phage lysis regulatory protein, LysB family. Members of this protein family are phage lysis regulatory protein, including the well-studied protein LysB (lysis protein B) of Enterobacteria phage P2. For members of this family, genes are found in phage or in prophage regions of bacterial genomes, typically near a phage lysozyme or phage holin.
Probab=81.88 E-value=15 Score=30.52 Aligned_cols=30 Identities=17% Similarity=0.220 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 51 EHSALRSQLAEKDSRIAELQSQIESIYSSL 80 (207)
Q Consensus 51 E~~~LR~~LaEKd~~i~eLq~rvs~Le~~L 80 (207)
+...||..+......+...+..+..+..+|
T Consensus 20 ~~~~l~~~~~~a~~~~~~~~~~l~~~~~qL 49 (135)
T TIGR03495 20 RLRNARADLERANRVLKAQQAELASKANQL 49 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 334455555555555554444444444444
No 203
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=81.65 E-value=33 Score=31.40 Aligned_cols=67 Identities=15% Similarity=0.287 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 028596 49 ESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKL 115 (207)
Q Consensus 49 EsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDvaKL 115 (207)
|-+.+.-|.+..-+.-.+.++++.+...-.+++..+....+....|..+..+|...++|-..++.+.
T Consensus 143 E~~lr~~R~~a~~r~~e~~~iE~~l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~ 209 (267)
T PF10234_consen 143 EVELREERQRALARPLELNEIEKALKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERN 209 (267)
T ss_pred hHhHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666777666777777777776666666667777888889999999999999998877776654
No 204
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=81.43 E-value=17 Score=39.64 Aligned_cols=81 Identities=22% Similarity=0.273 Sum_probs=46.2
Q ss_pred hCCCCchhhHHHHHHHHHH-----HHHHhhhhhHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 21 VLPSDPFEQLDVARKITSI-----AISTRVSDLESEHSALRS--------------QLAEKDSRIAELQSQIESIYSSLS 81 (207)
Q Consensus 21 vLP~DP~EQLdlArkIts~-----A~atRVs~LEsE~~~LR~--------------~LaEKd~~i~eLq~rvs~Le~~L~ 81 (207)
|.+-+|.+==.+.+..--+ ++..++..||..++.||. .+..=...|+.|+.++.++|.++.
T Consensus 772 ~t~~s~~~v~~le~~l~~~~~~~~~~~~~~~~~ee~~~~lr~~~~~l~~~l~~~~~~~k~~~~~~~~l~~~i~~~E~~~~ 851 (1293)
T KOG0996|consen 772 VTGVSKESVEKLERALSKMSDKARQHQEQLHELEERVRKLRERIPELENRLEKLTASVKRLAELIEYLESQIAELEAAVL 851 (1293)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5566665543443333222 444444444444444443 333334466777777778888765
Q ss_pred ------HHHHHHHHHHHHHHHHHHHH
Q 028596 82 ------DKLGQAQADKERLSKENEAL 101 (207)
Q Consensus 82 ------~rL~~a~ee~~kL~kE~~sL 101 (207)
.+|+...+-...|.+|.+.|
T Consensus 852 k~~~d~~~l~~~~~~ie~l~kE~e~~ 877 (1293)
T KOG0996|consen 852 KKVVDKKRLKELEEQIEELKKEVEEL 877 (1293)
T ss_pred hccCcHHHHHHHHHHHHHHHHHHHHH
Confidence 66666666677777777776
No 205
>PRK00295 hypothetical protein; Provisional
Probab=81.40 E-value=15 Score=26.80 Aligned_cols=27 Identities=15% Similarity=0.331 Sum_probs=11.3
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHhhccc
Q 028596 102 TNTVRKLQRDVSKLEVFRKTLVQSLKD 128 (207)
Q Consensus 102 a~TVKkL~RDvaKLE~FKk~LmqSLq~ 128 (207)
..+|-+.+++++.|+.=-+.|.+.|.+
T Consensus 25 n~~v~~Qq~~I~~L~~ql~~L~~rl~~ 51 (68)
T PRK00295 25 NDVLVEQQRVIERLQLQMAALIKRQEE 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444433
No 206
>PF05278 PEARLI-4: Arabidopsis phospholipase-like protein (PEARLI 4); InterPro: IPR007942 This family contains several phospholipase-like proteins from Arabidopsis thaliana and other members of the Streptophyta which are homologous to PEARLI 4.
Probab=81.16 E-value=29 Score=31.90 Aligned_cols=64 Identities=22% Similarity=0.442 Sum_probs=44.7
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028596 42 STRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQ 109 (207)
Q Consensus 42 atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~~sLa~TVKkL~ 109 (207)
..++...+.|...+...|.++...+.++++|+. +..+||..+..+-.+|.+.-..+...|++..
T Consensus 199 ~r~l~~~~~ELe~~~EeL~~~Eke~~e~~~~i~----e~~~rl~~l~~~~~~l~k~~~~~~sKV~kf~ 262 (269)
T PF05278_consen 199 DRKLELKKEELEELEEELKQKEKEVKEIKERIT----EMKGRLGELEMESTRLSKTIKSIKSKVEKFH 262 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344555566666777777777777777777774 3446666777888888887777777777764
No 207
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=80.92 E-value=8.2 Score=41.30 Aligned_cols=32 Identities=25% Similarity=0.532 Sum_probs=19.5
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 43 TRVSDLESEHSALRSQLAEKDSRIAELQSQIE 74 (207)
Q Consensus 43 tRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs 74 (207)
+-++.|++-..+|..++.+-+..|.+|+++|.
T Consensus 410 sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVD 441 (1243)
T KOG0971|consen 410 SELEELRRQKERLSRELDQAESTIADLKEQVD 441 (1243)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555566666666666666666666653
No 208
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=80.78 E-value=14 Score=29.86 Aligned_cols=44 Identities=14% Similarity=0.234 Sum_probs=24.5
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 38 SIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (207)
Q Consensus 38 s~A~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~ 81 (207)
.|.+..|+..|+.++...+..-.+=...-.+|+..+.+|..+--
T Consensus 11 ~~el~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~ 54 (107)
T PF09304_consen 11 QNELQNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNA 54 (107)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHH
Confidence 45677888888888887775544333333335555555554443
No 209
>KOG3119 consensus Basic region leucine zipper transcription factor [Transcription]
Probab=80.70 E-value=8.8 Score=34.32 Aligned_cols=77 Identities=25% Similarity=0.267 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcc
Q 028596 52 HSALRSQLAEKDSRIAELQSQIESIYS-SLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLK 127 (207)
Q Consensus 52 ~~~LR~~LaEKd~~i~eLq~rvs~Le~-~L~---~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDvaKLE~FKk~LmqSLq 127 (207)
...++.-...|+....+.++|-+..=+ +.. .+..+...+...|.+||..|...|..|.+++++|..++.+.++...
T Consensus 181 ~~~~~~~~~~~~~~y~err~rNN~A~~kSR~~~k~~~~e~~~r~~~leken~~lr~~v~~l~~el~~~~~~~~~~~~~~~ 260 (269)
T KOG3119|consen 181 KSKLSSPVEKKDPEYKERRRRNNEAVRKSRDKRKQKEDEMAHRVAELEKENEALRTQVEQLKKELATLRRLFLQLPKPGG 260 (269)
T ss_pred hccCCCchhcCCHHHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccC
Confidence 344444445566666666665442211 111 3344566777889999999999999999999999999888776554
Q ss_pred c
Q 028596 128 D 128 (207)
Q Consensus 128 ~ 128 (207)
+
T Consensus 261 ~ 261 (269)
T KOG3119|consen 261 A 261 (269)
T ss_pred C
Confidence 3
No 210
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=80.68 E-value=40 Score=29.81 Aligned_cols=54 Identities=17% Similarity=0.294 Sum_probs=35.5
Q ss_pred hhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHH
Q 028596 28 EQLDVARKITSIAISTRVSDLESEHSALRSQLAEKD-----SRIAELQSQIESIYSSLS 81 (207)
Q Consensus 28 EQLdlArkIts~A~atRVs~LEsE~~~LR~~LaEKd-----~~i~eLq~rvs~Le~~L~ 81 (207)
++|+-...-...++..++...+..+..+...+.... +.+...+.++..+...|.
T Consensus 150 ~~l~~~~~~l~~~~~~~l~~~~~~L~~l~~~l~~~~~~~p~~~l~~~~~~Ld~l~~rL~ 208 (319)
T PF02601_consen 150 QRLDELRQRLNRAMRNRLQRKRQRLNQLAKRLQLQSRRLPERKLEQQQQRLDELKQRLK 208 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555777777777777777777777544 456666666666666665
No 211
>smart00338 BRLZ basic region leucin zipper.
Probab=80.56 E-value=17 Score=25.36 Aligned_cols=26 Identities=38% Similarity=0.666 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHH
Q 028596 91 KERLSKENEALTNTVRKLQRDVSKLE 116 (207)
Q Consensus 91 ~~kL~kE~~sLa~TVKkL~RDvaKLE 116 (207)
...|..+|..|...|..|..++..|.
T Consensus 35 ~~~L~~en~~L~~~~~~l~~e~~~lk 60 (65)
T smart00338 35 VEQLEAENERLKKEIERLRRELEKLK 60 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555555555444
No 212
>PRK04863 mukB cell division protein MukB; Provisional
Probab=80.37 E-value=30 Score=38.25 Aligned_cols=73 Identities=14% Similarity=0.214 Sum_probs=33.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 028596 48 LESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRK 120 (207)
Q Consensus 48 LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~---~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDvaKLE~FKk 120 (207)
++.++..|..++.+-...+.++++++..++..+. .++.....+..++..+.+.+...+..++..++.|+.-|.
T Consensus 353 l~~~LeELee~Lee~eeeLeeleeeleeleeEleelEeeLeeLqeqLaelqqel~elQ~el~q~qq~i~~Le~~~~ 428 (1486)
T PRK04863 353 YQADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQALERAKQ 428 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333 222344444455555555555555556666666555544
No 213
>PRK12705 hypothetical protein; Provisional
Probab=80.36 E-value=31 Score=34.03 Aligned_cols=14 Identities=29% Similarity=0.389 Sum_probs=9.5
Q ss_pred HHHHHHhhcccccC
Q 028596 118 FRKTLVQSLKDDED 131 (207)
Q Consensus 118 FKk~LmqSLq~D~~ 131 (207)
.|+.||..+.++-.
T Consensus 143 ak~~l~~~~~~~~~ 156 (508)
T PRK12705 143 ARKLLLKLLDAELE 156 (508)
T ss_pred HHHHHHHHHHHHHH
Confidence 57778877766543
No 214
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=80.29 E-value=9.8 Score=29.73 Aligned_cols=41 Identities=15% Similarity=0.212 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhc
Q 028596 86 QAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSL 126 (207)
Q Consensus 86 ~a~ee~~kL~kE~~sLa~TVKkL~RDvaKLE~FKk~LmqSL 126 (207)
...+++.+|+.+|..|...|+.|+.+-+-+|..=|.=+.=.
T Consensus 38 ~~~~e~~~l~~~n~~L~~eI~~L~~~~dyiEe~AR~~Lg~v 78 (105)
T PRK00888 38 AQQQTNAKLKARNDQLFAEIDDLKGGQEAIEERARNELGMV 78 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHcCCC
Confidence 66667778888888888888888877666776666544433
No 215
>KOG4005 consensus Transcription factor XBP-1 [Transcription]
Probab=80.10 E-value=27 Score=32.36 Aligned_cols=81 Identities=21% Similarity=0.286 Sum_probs=51.7
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----hhHHH
Q 028596 42 STRVSDLESEHSALRSQLAEKDSRI---AELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQ----RDVSK 114 (207)
Q Consensus 42 atRVs~LEsE~~~LR~~LaEKd~~i---~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~~sLa~TVKkL~----RDvaK 114 (207)
..|..-|--|-.-+|.+|-.+-+.- ---..|.+.+|.++. ...+++.+|+.||++|-..-+.|. .-+..
T Consensus 58 r~RL~HLS~EEK~~RrKLKNRVAAQtaRDrKKaRm~eme~~i~----dL~een~~L~~en~~Lr~~n~~L~~~n~el~~~ 133 (292)
T KOG4005|consen 58 RRRLDHLSWEEKVQRRKLKNRVAAQTARDRKKARMEEMEYEIK----DLTEENEILQNENDSLRAINESLLAKNHELDSE 133 (292)
T ss_pred HHhhcccCHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 4556666566666666664321110 112345566666664 888999999999999987766664 44677
Q ss_pred HHHHHHHHHhhc
Q 028596 115 LEVFRKTLVQSL 126 (207)
Q Consensus 115 LE~FKk~LmqSL 126 (207)
||-++..||.+=
T Consensus 134 le~~~~~l~~~~ 145 (292)
T KOG4005|consen 134 LELLRQELAELK 145 (292)
T ss_pred HHHHHHHHHhhH
Confidence 888888887653
No 216
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=79.87 E-value=12 Score=39.58 Aligned_cols=92 Identities=21% Similarity=0.276 Sum_probs=72.9
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 028596 40 AISTRVSDLESEHSALRSQLAEKDSRI----AELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKL 115 (207)
Q Consensus 40 A~atRVs~LEsE~~~LR~~LaEKd~~i----~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDvaKL 115 (207)
-+--+++.||.|..+||..|..-.... .+=..++..||.++ +.|+..+..+.+|.+-+..-..+.++|...+-.+
T Consensus 513 ~le~e~~~le~E~~~l~~el~~~~~~~~kl~eer~qklk~le~q~-s~lkk~l~~~~~l~~~~~~~~~~~~kl~~ei~~~ 591 (913)
T KOG0244|consen 513 TLEAEKSPLESERSRLRNELNVFNRLAAKLGEERVQKLKSLETQI-SLLKKKLSSQRKLIKPKPKSEGIRAKLLQEIHIA 591 (913)
T ss_pred hHHHHhcccccccHHHHHHHHhhhHHHHHhhhHHHHHHHHHHHHH-HHHHHhhHHHHHHhccchhhHHHHHHHHHHHHHH
Confidence 455567778888888888887554433 23344566666666 6888888899999999999999999999999999
Q ss_pred HHHHHHHHhhcccccCC
Q 028596 116 EVFRKTLVQSLKDDEDA 132 (207)
Q Consensus 116 E~FKk~LmqSLq~D~~~ 132 (207)
|.-|.+|++-..+|.+.
T Consensus 592 k~~kv~l~~~~~~d~ek 608 (913)
T KOG0244|consen 592 KGQKVQLLRVMKEDAEK 608 (913)
T ss_pred HHHHHHHHHHHhhhHHH
Confidence 99999999988888763
No 217
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=79.86 E-value=11 Score=26.24 Aligned_cols=30 Identities=27% Similarity=0.378 Sum_probs=13.2
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 45 VSDLESEHSALRSQLAEKDSRIAELQSQIE 74 (207)
Q Consensus 45 Vs~LEsE~~~LR~~LaEKd~~i~eLq~rvs 74 (207)
...+..|+..|+.++++-...+.+|+.++.
T Consensus 19 ~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~ 48 (80)
T PF04977_consen 19 YYQLNQEIAELQKEIEELKKENEELKEEIE 48 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444443
No 218
>PF06476 DUF1090: Protein of unknown function (DUF1090); InterPro: IPR009468 This family consists of several bacterial proteins of unknown function and is known as YqjC in Escherichia coli.
Probab=79.79 E-value=17 Score=29.15 Aligned_cols=70 Identities=21% Similarity=0.331 Sum_probs=45.8
Q ss_pred hHHHHHHHHHHHHHHhhhhhHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHH
Q 028596 29 QLDVARKITSIAISTRVSDLESEHSALRS------QLAEKDSRIAELQSQIESIYSSLS-----DKLGQAQADKERLSKE 97 (207)
Q Consensus 29 QLdlArkIts~A~atRVs~LEsE~~~LR~------~LaEKd~~i~eLq~rvs~Le~~L~-----~rL~~a~ee~~kL~kE 97 (207)
||+.|+ ...=..||.+||.-...++. -+.+....|.+.+.+|...+.+|. +.-..+.-...||.+.
T Consensus 32 qI~~Ak---~~gN~~rv~GLe~AL~~v~~~Ctd~~l~~e~q~ki~~~~~kV~ere~eL~eA~~~G~~~KI~K~~~KL~ea 108 (115)
T PF06476_consen 32 QIEYAK---AHGNQHRVAGLEKALEEVKAHCTDEGLKAERQQKIAEKQQKVAEREAELKEAQAKGDSDKIAKRQKKLAEA 108 (115)
T ss_pred HHHHHH---HcCCHHHHHHHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 555554 22335789999999888875 355888888888889988888888 2223333334455555
Q ss_pred HHHH
Q 028596 98 NEAL 101 (207)
Q Consensus 98 ~~sL 101 (207)
+..|
T Consensus 109 ~~eL 112 (115)
T PF06476_consen 109 KAEL 112 (115)
T ss_pred HHHH
Confidence 5444
No 219
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=79.78 E-value=32 Score=29.14 Aligned_cols=80 Identities=19% Similarity=0.335 Sum_probs=55.7
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 028596 40 AISTRVSDLESEHSALRSQLAEKDSRI-----AELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSK 114 (207)
Q Consensus 40 A~atRVs~LEsE~~~LR~~LaEKd~~i-----~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDvaK 114 (207)
-+...|-+||......|..|++=.+.. .++++=|..+. .+|-+|....++-.+|...++.|...++.|..-|.+
T Consensus 45 ~~I~evD~Le~~er~aR~rL~eVS~~f~~ysE~dik~AYe~A~-~lQ~~L~~~re~E~qLr~rRD~LErrl~~l~~tier 123 (159)
T PF05384_consen 45 EVIEEVDKLEKRERQARQRLAEVSRNFDRYSEEDIKEAYEEAH-ELQVRLAMLREREKQLRERRDELERRLRNLEETIER 123 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcccCHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355678888888888888887654443 22322222211 122555688888899999999999999999999998
Q ss_pred HHHHHH
Q 028596 115 LEVFRK 120 (207)
Q Consensus 115 LE~FKk 120 (207)
-|.+--
T Consensus 124 AE~l~s 129 (159)
T PF05384_consen 124 AENLVS 129 (159)
T ss_pred HHHHHH
Confidence 887643
No 220
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=79.70 E-value=28 Score=37.48 Aligned_cols=69 Identities=22% Similarity=0.368 Sum_probs=32.3
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS----DKLGQAQADKERLSKENEALTNTVRKL 108 (207)
Q Consensus 40 A~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~----~rL~~a~ee~~kL~kE~~sLa~TVKkL 108 (207)
++..++..++.+++.--..+.++...+..|+++++.++.++. ..+.+..++...|.+|...|...+..|
T Consensus 348 ~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L 420 (1074)
T KOG0250|consen 348 DLRREVNDLKEEIREIENSIRKLKKEVDRLEKQIADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQINSL 420 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555544444444444444444444444444441 333344444444444444444444333
No 221
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=79.57 E-value=3 Score=30.29 Aligned_cols=28 Identities=29% Similarity=0.414 Sum_probs=24.0
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 028596 40 AISTRVSDLESEHSALRSQLAEKDSRIA 67 (207)
Q Consensus 40 A~atRVs~LEsE~~~LR~~LaEKd~~i~ 67 (207)
-+..|+.-||+||.+++..+..|..+-.
T Consensus 25 EL~~RIa~L~aEI~R~~~~~~~K~a~r~ 52 (59)
T PF06698_consen 25 ELEERIALLEAEIARLEAAIAKKSASRA 52 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678999999999999999999887654
No 222
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=79.47 E-value=17 Score=29.09 Aligned_cols=23 Identities=22% Similarity=0.364 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 028596 86 QAQADKERLSKENEALTNTVRKL 108 (207)
Q Consensus 86 ~a~ee~~kL~kE~~sLa~TVKkL 108 (207)
...++|+.|.-||+.|...+.++
T Consensus 33 el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 33 ELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 77888999999998887776655
No 223
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=79.29 E-value=31 Score=30.71 Aligned_cols=72 Identities=19% Similarity=0.285 Sum_probs=38.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 028596 47 DLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKT 121 (207)
Q Consensus 47 ~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDvaKLE~FKk~ 121 (207)
.++.-+-.+-++|.+++..+...+.+...++.+...--....+....|..+..++...++.|. .||+.-++.
T Consensus 187 ~~~~~ilq~d~~L~~~ek~~~~~~~k~e~~e~e~~~l~e~~~~~~~~le~~~~~~ee~~~~L~---ekme~e~~~ 258 (297)
T PF02841_consen 187 SMENSILQADQQLTEKEKEIEEEQAKAEAAEKEKEKLEEKQKEQEQMLEQQERSYEEHIKQLK---EKMEEEREQ 258 (297)
T ss_dssp HHHHHHHHH-TTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 445555566667777777777777777777666651112223334445555555555555554 344444443
No 224
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=79.25 E-value=0.61 Score=46.18 Aligned_cols=20 Identities=25% Similarity=0.464 Sum_probs=0.0
Q ss_pred HHhhhhhHHHHHHHHHHHHH
Q 028596 42 STRVSDLESEHSALRSQLAE 61 (207)
Q Consensus 42 atRVs~LEsE~~~LR~~LaE 61 (207)
+.|+.+||.++.+.|.+|.+
T Consensus 307 a~r~~klE~~ve~YKkKLed 326 (713)
T PF05622_consen 307 ADRADKLENEVEKYKKKLED 326 (713)
T ss_dssp --------------------
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45677777777777766654
No 225
>KOG4552 consensus Vitamin-D-receptor interacting protein complex component [Transcription]
Probab=79.23 E-value=12 Score=34.09 Aligned_cols=38 Identities=21% Similarity=0.275 Sum_probs=30.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 44 RVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (207)
Q Consensus 44 RVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~ 81 (207)
--.+.|.+++.|+..+..+|+.|..||+.+-..|..|.
T Consensus 68 eq~k~e~~m~~Lea~VEkrD~~IQqLqk~LK~aE~iLt 105 (272)
T KOG4552|consen 68 EQQKREQLMRTLEAHVEKRDEVIQQLQKNLKSAEVILT 105 (272)
T ss_pred hHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 34556777888888888888888888888888888887
No 226
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=79.20 E-value=26 Score=30.95 Aligned_cols=56 Identities=13% Similarity=0.269 Sum_probs=36.3
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH------HHHHHHHHHHHHHH
Q 028596 40 AISTRVSDLESEHSALRSQLAEKDSRIA-------ELQSQIESIYSSLS------DKLGQAQADKERLS 95 (207)
Q Consensus 40 A~atRVs~LEsE~~~LR~~LaEKd~~i~-------eLq~rvs~Le~~L~------~rL~~a~ee~~kL~ 95 (207)
.++.+|-+||-.+..|-.++.++-+... .+..+++.++..+. +|+-.+++.+.|-+
T Consensus 76 rvA~lvinlE~kvD~lee~fdd~~d~l~~q~eq~~~~~~~v~~~~q~~~~l~~K~D~~L~llE~~~~~~ 144 (189)
T TIGR02132 76 NVASLVINLEEKVDLIEEFFDDKFDELEAQQEQAPALKKDVTKLKQDIKSLDKKLDKILELLEGQQKTQ 144 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCchHHhHHHHHHHHHHHHHHHHHHHHHHHhcCccch
Confidence 3788888999999888888888777666 44455555555554 44444444443333
No 227
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=79.09 E-value=25 Score=34.28 Aligned_cols=25 Identities=24% Similarity=0.423 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 028596 86 QAQADKERLSKENEALTNTVRKLQR 110 (207)
Q Consensus 86 ~a~ee~~kL~kE~~sLa~TVKkL~R 110 (207)
...++...+.++...+.+.+..|..
T Consensus 387 el~e~leeie~eq~ei~e~l~~Lrk 411 (569)
T PRK04778 387 EILKQLEEIEKEQEKLSEMLQGLRK 411 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334444444444444444333
No 228
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=79.04 E-value=26 Score=26.76 Aligned_cols=62 Identities=23% Similarity=0.330 Sum_probs=29.9
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 028596 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLE 116 (207)
Q Consensus 40 A~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDvaKLE 116 (207)
+.+.|..+|...+..|+..+.+......+|+ ..+ +....+.+.-..|..+|..|..=..+||
T Consensus 32 ~~~~kY~~~~~~~~~l~~~~~~l~~k~~~l~-------~~l--------~~Id~Ie~~V~~LE~~v~~LD~ysk~LE 93 (99)
T PF10046_consen 32 ATSLKYKKMKDIAAGLEKNLEDLNQKYEELQ-------PYL--------QQIDQIEEQVTELEQTVYELDEYSKELE 93 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555666666666665555544444333333 222 2333333444445555555555555554
No 229
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=79.02 E-value=9.9 Score=41.31 Aligned_cols=33 Identities=21% Similarity=0.422 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 028596 82 DKLGQAQADKERLSKENEALTNTVRKLQRDVSK 114 (207)
Q Consensus 82 ~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDvaK 114 (207)
+++..+.++..+|..+.+.+...+++-.|.++|
T Consensus 907 ~kv~~~~~~~~~l~~~i~k~~~~i~~s~~~i~k 939 (1293)
T KOG0996|consen 907 DKVEKINEQLDKLEADIAKLTVAIKTSDRNIAK 939 (1293)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHhcCcccHHH
Confidence 666666666666666666666665554444444
No 230
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=78.97 E-value=18 Score=39.06 Aligned_cols=39 Identities=21% Similarity=0.231 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 028596 84 LGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTL 122 (207)
Q Consensus 84 L~~a~ee~~kL~kE~~sLa~TVKkL~RDvaKLE~FKk~L 122 (207)
+......+.+...|+....-.+++|..+|.+++.=++..
T Consensus 887 i~~~~~~~e~~~~e~~~~~l~~kkle~e~~~~~~e~~~~ 925 (1174)
T KOG0933|consen 887 ISGLLTSQEKCLSEKSDGELERKKLEHEVTKLESEKANA 925 (1174)
T ss_pred HhhhhhHHHHHHHHhhcccchHHHHHhHHHHhhhhHHHH
Confidence 444556667888899999999999999999998766554
No 231
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=78.88 E-value=25 Score=29.18 Aligned_cols=68 Identities=21% Similarity=0.324 Sum_probs=36.3
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 028596 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRK 120 (207)
Q Consensus 41 ~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDvaKLE~FKk 120 (207)
+--|+..|-.+...+++++.+.........+.... ...++..++.+|-..|...+++...|+. ++|+
T Consensus 116 ~I~r~~~li~~l~~~~~~~~~~~kq~~~~~~~~~~----------~~~~~~~~~~~ei~~lk~el~~~~~~~~---~Lkk 182 (192)
T PF05529_consen 116 VIRRVHSLIKELIKLEEKLEALKKQAESASEAAEK----------LLKEENKKLSEEIEKLKKELEKKEKEIE---ALKK 182 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhh----------hhhhhhhhhHHHHHHHHHHHHHHHHHHH---HHHH
Confidence 34677777777776666655444433333222111 1334555666666666666666555544 4455
Q ss_pred H
Q 028596 121 T 121 (207)
Q Consensus 121 ~ 121 (207)
+
T Consensus 183 Q 183 (192)
T PF05529_consen 183 Q 183 (192)
T ss_pred H
Confidence 4
No 232
>PF14282 FlxA: FlxA-like protein
Probab=78.34 E-value=14 Score=28.66 Aligned_cols=57 Identities=28% Similarity=0.448 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 028596 63 DSRIAELQSQIESIYSSLSDKLGQA-QADKERLSKENEALTNTVRKLQRDVSKLEVFRK 120 (207)
Q Consensus 63 d~~i~eLq~rvs~Le~~L~~rL~~a-~ee~~kL~kE~~sLa~TVKkL~RDvaKLE~FKk 120 (207)
+..|..|++++..|+..|. .|... .-....-......|-..+.-|...++.|..=+.
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql~-~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q~~ 75 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQLQ-ELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQLQSQQA 75 (106)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555556666665555554 22220 001122233444555555555555555544443
No 233
>PRK00736 hypothetical protein; Provisional
Probab=78.08 E-value=19 Score=26.20 Aligned_cols=28 Identities=11% Similarity=0.199 Sum_probs=12.0
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhccc
Q 028596 101 LTNTVRKLQRDVSKLEVFRKTLVQSLKD 128 (207)
Q Consensus 101 La~TVKkL~RDvaKLE~FKk~LmqSLq~ 128 (207)
|...|.+.++++++|+.=-+.|...|.+
T Consensus 24 Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~ 51 (68)
T PRK00736 24 LSDQLAEQWKTVEQMRKKLDALTERFLS 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444433
No 234
>PRK12704 phosphodiesterase; Provisional
Probab=78.05 E-value=73 Score=31.26 Aligned_cols=35 Identities=23% Similarity=0.383 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcc
Q 028596 93 RLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLK 127 (207)
Q Consensus 93 kL~kE~~sLa~TVKkL~RDvaKLE~FKk~LmqSLq 127 (207)
+|......|...-+.|.+--..++..+....+-|.
T Consensus 111 eL~~re~~Le~re~eLe~~~~~~~~~~~~~~~~l~ 145 (520)
T PRK12704 111 ELEKKEKELEQKQQELEKKEEELEELIEEQLQELE 145 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333344444444444443
No 235
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.87 E-value=18 Score=37.14 Aligned_cols=37 Identities=19% Similarity=0.277 Sum_probs=30.7
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESI 76 (207)
Q Consensus 40 A~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~L 76 (207)
-|-.|+-.||.|...+|+.|+++.....-|...++.+
T Consensus 104 ~yl~kI~eleneLKq~r~el~~~q~E~erl~~~~sd~ 140 (772)
T KOG0999|consen 104 YYLQKILELENELKQLRQELTNVQEENERLEKVHSDL 140 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4678899999999999999999988887777666544
No 236
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=77.81 E-value=60 Score=30.21 Aligned_cols=53 Identities=15% Similarity=0.251 Sum_probs=28.1
Q ss_pred hHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH
Q 028596 29 QLDVARKITSIAISTRVSDLESEHSALRSQLA--EKDSRIAELQSQIESIYSSLS 81 (207)
Q Consensus 29 QLdlArkIts~A~atRVs~LEsE~~~LR~~La--EKd~~i~eLq~rvs~Le~~L~ 81 (207)
+|+-...=...++..++..-+..+..|+..+. .-...+..++.++..+...|.
T Consensus 268 ~Ld~l~~rL~~a~~~~L~~~~~~L~~L~~rL~~~~P~~~l~~~~q~L~~l~~rL~ 322 (438)
T PRK00286 268 RLQQLQQRLARAMRRRLEQKRQRLDQLARRLKFQSPERLLAQQQQRLDRLQQRLQ 322 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHHHHHHHHH
Confidence 44444444455777777777777777666653 223334444444444444443
No 237
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=77.75 E-value=16 Score=34.16 Aligned_cols=74 Identities=20% Similarity=0.264 Sum_probs=47.5
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 028596 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS-DKLGQAQADKERLSKENEALTNTVRKLQRDVS 113 (207)
Q Consensus 40 A~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~-~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDva 113 (207)
-..-+...|..|+..||+++.|=.--|.-|+++++....... .-.+....+..+|-.+-..+-.+..-|.+|+.
T Consensus 76 ~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qLe~d~q 150 (319)
T PF09789_consen 76 ESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQLERDLQ 150 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356778899999999999999999999999999887766554 11111113344444444444444444444443
No 238
>smart00338 BRLZ basic region leucin zipper.
Probab=77.72 E-value=13 Score=25.93 Aligned_cols=39 Identities=28% Similarity=0.440 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 61 EKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTN 103 (207)
Q Consensus 61 EKd~~i~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~~sLa~ 103 (207)
-|..++.+|+.++..|+.+-. ....+...|..|+..|.+
T Consensus 23 rKk~~~~~Le~~~~~L~~en~----~L~~~~~~l~~e~~~lk~ 61 (65)
T smart00338 23 RKKAEIEELERKVEQLEAENE----RLKKEIERLRRELEKLKS 61 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 456678888877777766665 444444445555544443
No 239
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=77.69 E-value=24 Score=39.91 Aligned_cols=73 Identities=25% Similarity=0.438 Sum_probs=46.9
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 028596 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSKL 115 (207)
Q Consensus 40 A~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~---~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDvaKL 115 (207)
-+-+|+-.|+.++..||.++.+|...+++|....+ ..|. .++.....+..++..+.+++...+-+|.-.++-|
T Consensus 802 ~~e~~i~eL~~el~~lk~klq~~~~~~r~l~~~~~---~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~le~k~~eL 877 (1822)
T KOG4674|consen 802 KCESRIKELERELQKLKKKLQEKSSDLRELTNSLE---KQLENAQNLVDELESELKSLLTSLDSVSTNIAKLEIKLSEL 877 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45578889999999999999999999999875433 3333 4444444444445554444444444444444433
No 240
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=77.65 E-value=23 Score=31.55 Aligned_cols=56 Identities=18% Similarity=0.370 Sum_probs=33.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 46 SDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTV 105 (207)
Q Consensus 46 s~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~~sLa~TV 105 (207)
..+.++...|+.++.+|+.....+++++..|.-+.. ...++-.+|.+|++.|.+++
T Consensus 154 ~~~~~~~~kL~~el~~~~~~Le~~~~~~~al~Kq~e----~~~~EydrLlee~~~Lq~~i 209 (216)
T KOG1962|consen 154 DKLKADLEKLETELEKKQKKLEKAQKKVDALKKQSE----GLQDEYDRLLEEYSKLQEQI 209 (216)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HcccHHHHHHHHHHHHHHHH
Confidence 445555566666666666666666666666655554 55556666666666665554
No 241
>PRK02793 phi X174 lysis protein; Provisional
Probab=77.49 E-value=14 Score=27.18 Aligned_cols=26 Identities=15% Similarity=0.153 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028596 86 QAQADKERLSKENEALTNTVRKLQRD 111 (207)
Q Consensus 86 ~a~ee~~kL~kE~~sLa~TVKkL~RD 111 (207)
...+...+.+++.+.|...++.|...
T Consensus 26 ~Ln~~v~~Qq~~I~~L~~~l~~L~~r 51 (72)
T PRK02793 26 ELNVTVTAHEMEMAKLRDHLRLLTEK 51 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555666666666655443
No 242
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=77.48 E-value=18 Score=29.11 Aligned_cols=31 Identities=32% Similarity=0.467 Sum_probs=12.7
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 028596 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQ 70 (207)
Q Consensus 40 A~atRVs~LEsE~~~LR~~LaEKd~~i~eLq 70 (207)
.+..|+...+.++..++..|.+=...+.+|+
T Consensus 34 dL~~R~~~Q~~~~~~~~~~l~~i~~~l~~L~ 64 (141)
T PF13874_consen 34 DLKKRVEAQEEEIAQHRERLKEINDKLEELQ 64 (141)
T ss_dssp ------------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777777777777777776666666663
No 243
>PRK10869 recombination and repair protein; Provisional
Probab=77.43 E-value=13 Score=36.19 Aligned_cols=58 Identities=10% Similarity=0.056 Sum_probs=35.6
Q ss_pred CCchhhHHHHHHHHH-HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 24 SDPFEQLDVARKITS-IAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (207)
Q Consensus 24 ~DP~EQLdlArkIts-~A~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~ 81 (207)
-+|..|+++--.+.. ..+...+..+=.+...++.+|.+......+.++++.-|+.++.
T Consensus 137 l~~~~~~~lLD~~~~~~~~~~~~~~~y~~~~~~~~~l~~l~~~~~~~~~~~d~l~fql~ 195 (553)
T PRK10869 137 LKPEHQKTLLDAYANETSLLQEMRAAYQLWHQSCRDLAQHQQQSQERAARKQLLQYQLK 195 (553)
T ss_pred cCHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 489999998877665 4555666665556566666555555555555555555554444
No 244
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=77.21 E-value=3.5 Score=36.54 Aligned_cols=31 Identities=35% Similarity=0.527 Sum_probs=23.9
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 42 STRVSDLESEHSALRSQLAEKDSRIAELQSQ 72 (207)
Q Consensus 42 atRVs~LEsE~~~LR~~LaEKd~~i~eLq~r 72 (207)
..|+..||.-|..|=.+++|||..|.-||.|
T Consensus 135 ~~K~qemE~RIK~LhaqI~EKDAmIkVLQqr 165 (205)
T PF12240_consen 135 NRKCQEMENRIKALHAQIAEKDAMIKVLQQR 165 (205)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4677778888888888888888888887744
No 245
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=77.12 E-value=6 Score=37.13 Aligned_cols=89 Identities=31% Similarity=0.389 Sum_probs=19.9
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028596 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS----------DKLGQAQADKERLSKENEALTNTVRKLQ 109 (207)
Q Consensus 40 A~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~----------~rL~~a~ee~~kL~kE~~sLa~TVKkL~ 109 (207)
.+.++|+.|++.+..|-..+++-...+..|...+..++..+. ..+..-......|+..-+.+.-.|-.|.
T Consensus 53 ~lss~iSdLss~L~~l~~sl~~~~s~L~sLsstV~~lq~Sl~~lsssVs~lS~~ls~h~ssIS~Lqs~v~~lsTdvsNLk 132 (326)
T PF04582_consen 53 SLSSTISDLSSDLQDLASSLADMTSELNSLSSTVTSLQSSLSSLSSSVSSLSSTLSDHSSSISDLQSSVSALSTDVSNLK 132 (326)
T ss_dssp -----------------------------------------------------------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhhhhhhhhhhhHHHHHHhhhhhhhhhhhhh
Confidence 455666666666666666666666666666655555555554 4444455556667777777777777777
Q ss_pred hhHHHHHHHHHHHHhhccc
Q 028596 110 RDVSKLEVFRKTLVQSLKD 128 (207)
Q Consensus 110 RDvaKLE~FKk~LmqSLq~ 128 (207)
+||+-+.-=-..|=+.++.
T Consensus 133 sdVSt~aL~ItdLe~RV~~ 151 (326)
T PF04582_consen 133 SDVSTQALNITDLESRVKA 151 (326)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhcchHhhHHHHHHH
Confidence 7776554433334334433
No 246
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=77.09 E-value=35 Score=31.23 Aligned_cols=22 Identities=14% Similarity=0.285 Sum_probs=9.8
Q ss_pred HHHHhhhhhHHHHHHHHHHHHH
Q 028596 40 AISTRVSDLESEHSALRSQLAE 61 (207)
Q Consensus 40 A~atRVs~LEsE~~~LR~~LaE 61 (207)
++..-+..+..++..+++++..
T Consensus 166 ~l~~ai~~~~~~~~~~~~~l~~ 187 (267)
T PF10234_consen 166 ALKEAIKAVQQQLQQTQQQLNN 187 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444443
No 247
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=77.09 E-value=9.3 Score=27.56 Aligned_cols=37 Identities=22% Similarity=0.393 Sum_probs=16.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 44 RVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSL 80 (207)
Q Consensus 44 RVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L 80 (207)
|+..||.++.++...+.-=...+.+|.+.+..++..+
T Consensus 1 Ri~elEn~~~~~~~~i~tvk~en~~i~~~ve~i~env 37 (55)
T PF05377_consen 1 RIDELENELPRIESSINTVKKENEEISESVEKIEENV 37 (55)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444444443
No 248
>PRK04325 hypothetical protein; Provisional
Probab=77.05 E-value=17 Score=26.88 Aligned_cols=29 Identities=28% Similarity=0.391 Sum_probs=14.5
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhccc
Q 028596 100 ALTNTVRKLQRDVSKLEVFRKTLVQSLKD 128 (207)
Q Consensus 100 sLa~TVKkL~RDvaKLE~FKk~LmqSLq~ 128 (207)
.|...|.+.++++++|+.--+.|...|.+
T Consensus 27 ~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~ 55 (74)
T PRK04325 27 GLNATVARQQQTLDLLQAQLRLLYQQMRD 55 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555554544
No 249
>PF04899 MbeD_MobD: MbeD/MobD like ; InterPro: IPR006983 The MbeD and MobD proteins are plasmid encoded, and are involved in the plasmid mobilisation and transfer in the presence of conjugative plasmids [].
Probab=76.86 E-value=28 Score=25.91 Aligned_cols=53 Identities=15% Similarity=0.172 Sum_probs=35.8
Q ss_pred hHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 29 QLDVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (207)
Q Consensus 29 QLdlArkIts~A~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~ 81 (207)
||--|.--..-+|..+-...++....|+..+..-.+..+.|.++|..|...+.
T Consensus 7 qLl~ale~Lq~~y~~q~~~Wq~sy~~Lq~~~~~t~~~~a~L~~qv~~Ls~qv~ 59 (70)
T PF04899_consen 7 QLLSALEELQQSYEKQQQEWQSSYADLQHMFEQTSQENAALSEQVNNLSQQVQ 59 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 55555555556677777777777777777777666666677777766666664
No 250
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=76.79 E-value=61 Score=29.69 Aligned_cols=79 Identities=23% Similarity=0.378 Sum_probs=58.6
Q ss_pred hhhhhHHHHHHHHHHHH---HHHHH------------------HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Q 028596 44 RVSDLESEHSALRSQLA---EKDSR------------------IAELQSQIESIYSSLS---DKLGQAQADKERLSKENE 99 (207)
Q Consensus 44 RVs~LEsE~~~LR~~La---EKd~~------------------i~eLq~rvs~Le~~L~---~rL~~a~ee~~kL~kE~~ 99 (207)
+|..|-..-..||.+|. +|-.. |..+-+++-.||.+-. .|-..+..-...+..|+.
T Consensus 203 ~~~~~~~~E~~Lr~QL~~Y~~Kf~efq~tL~kSNe~F~tfk~Emekm~Kk~kklEKE~~~~k~k~e~~n~~l~~m~eer~ 282 (309)
T PF09728_consen 203 QVQTLKETEKELREQLNLYSEKFEEFQDTLNKSNEVFETFKKEMEKMSKKIKKLEKENQTWKSKWEKSNKALIEMAEERQ 282 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 66666667777887776 44332 3344455555665555 666677777788999999
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHH
Q 028596 100 ALTNTVRKLQRDVSKLEVFRKTL 122 (207)
Q Consensus 100 sLa~TVKkL~RDvaKLE~FKk~L 122 (207)
.+...+.++.+.+.+||++-|+|
T Consensus 283 ~~~~~~~~~~~k~~kLe~LcRaL 305 (309)
T PF09728_consen 283 KLEKELEKLKKKIEKLEKLCRAL 305 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998886
No 251
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=76.70 E-value=0.8 Score=46.83 Aligned_cols=89 Identities=26% Similarity=0.403 Sum_probs=0.0
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 39 IAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS-----------DKLGQAQADKERLSKENEALTNTVRK 107 (207)
Q Consensus 39 ~A~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~-----------~rL~~a~ee~~kL~kE~~sLa~TVKk 107 (207)
.++..++..||.|+..||.++.+-..-..+|+.+++.+..++. .+.....+-..+|..+-..+...+..
T Consensus 260 ~~L~~~l~~le~e~~~L~eqleeE~e~k~~l~~qlsk~~~El~~~k~K~e~e~~~~~EelEeaKKkL~~~L~el~e~le~ 339 (859)
T PF01576_consen 260 QALEKQLRQLEHELEQLREQLEEEEEAKSELERQLSKLNAELEQWKKKYEEEAEQRTEELEEAKKKLERKLQELQEQLEE 339 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3888999999999999999999999999999999999999888 23334455667888888888888999
Q ss_pred HhhhHHHHHHHHHHHHhhcc
Q 028596 108 LQRDVSKLEVFRKTLVQSLK 127 (207)
Q Consensus 108 L~RDvaKLE~FKk~LmqSLq 127 (207)
++..++.|+.-|+.|.+=+.
T Consensus 340 ~~~~~~~LeK~k~rL~~Ele 359 (859)
T PF01576_consen 340 ANAKVSSLEKTKKRLQGELE 359 (859)
T ss_dssp --------------------
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999998888765443
No 252
>PF06246 Isy1: Isy1-like splicing family; InterPro: IPR009360 Isy1 protein is important in the optimisation of splicing [].; PDB: 1X4T_A.
Probab=76.68 E-value=13 Score=33.58 Aligned_cols=58 Identities=12% Similarity=0.172 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028596 52 HSALRSQLAEKDSRIAELQSQIESIYSSLS--DKLGQAQADKERLSKENEALTNTVRKLQ 109 (207)
Q Consensus 52 ~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~--~rL~~a~ee~~kL~kE~~sLa~TVKkL~ 109 (207)
+..|++-.-=+-..|.++-.+++.+...-- -+++..++++++|.+|+..=...++.|.
T Consensus 39 v~~l~~ae~WR~~ii~EIs~kv~~Iqd~~L~E~~IRdLNDeINkL~rEK~~WE~rI~~LG 98 (255)
T PF06246_consen 39 VKSLPEAEKWRRQIIKEISRKVTRIQDPSLGEFQIRDLNDEINKLIREKRHWERRIKELG 98 (255)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHH--S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 334444444445567777777776655443 7889999999999999999999999987
No 253
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=76.41 E-value=56 Score=29.14 Aligned_cols=81 Identities=19% Similarity=0.313 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH-------------------------------HHHHHHHHHHHH
Q 028596 52 HSALRSQLAEKDSRIAELQSQIESIYSSLS--DKLGQ-------------------------------AQADKERLSKEN 98 (207)
Q Consensus 52 ~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~--~rL~~-------------------------------a~ee~~kL~kE~ 98 (207)
+..|+.+|.||++.|-.|+.-+...|..+- ..+++ ..++...-....
T Consensus 59 ~~~L~~~LrEkEErILaLEad~~kWEqkYLEEs~mrq~a~dAaa~aa~~rdttiI~~s~~~s~~~s~r~~eel~~a~~K~ 138 (205)
T PF12240_consen 59 ASNLKELLREKEERILALEADMTKWEQKYLEESAMRQFAMDAAATAAAQRDTTIINHSPSESYNSSLREEEELHMANRKC 138 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcCCCCCCCccccchHHHHHhhhhH
Confidence 445788899999999999988888776654 11111 012222223334
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhcccccCC
Q 028596 99 EALTNTVRKLQRDVSKLEVFRKTLVQSLKDDEDA 132 (207)
Q Consensus 99 ~sLa~TVKkL~RDvaKLE~FKk~LmqSLq~D~~~ 132 (207)
-.|.+.||.|+..+..=++.=|.|=|..+.+...
T Consensus 139 qemE~RIK~LhaqI~EKDAmIkVLQqrs~~~~~k 172 (205)
T PF12240_consen 139 QEMENRIKALHAQIAEKDAMIKVLQQRSRKDPGK 172 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCc
Confidence 5678899999999999888888888877766643
No 254
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=76.29 E-value=33 Score=37.19 Aligned_cols=77 Identities=19% Similarity=0.295 Sum_probs=39.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028596 45 VSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS-------------DKLGQAQADKERLSKENEALTNTVRKLQRD 111 (207)
Q Consensus 45 Vs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~-------------~rL~~a~ee~~kL~kE~~sLa~TVKkL~RD 111 (207)
.++|.+....|+.++..++.+...+-+|...|+..+. ..|+..-+..+.|.+.++.|.-.-+.|..=
T Consensus 504 lsrl~a~~~elkeQ~kt~~~qye~~~~k~eeLe~~l~~lE~ENa~LlkqI~~Lk~t~qn~~~LEq~~n~lE~~~~elkk~ 583 (1195)
T KOG4643|consen 504 LSRLHALKNELKEQYKTCDIQYELLSNKLEELEELLGNLEEENAHLLKQIQSLKTTSQNGALLEQNNNDLELIHNELKKY 583 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3455555556666555555554444444444433332 344444455555555555555555555555
Q ss_pred HHHHHHHHHH
Q 028596 112 VSKLEVFRKT 121 (207)
Q Consensus 112 vaKLE~FKk~ 121 (207)
+.+|++++++
T Consensus 584 idaL~alrrh 593 (1195)
T KOG4643|consen 584 IDALNALRRH 593 (1195)
T ss_pred HHHHHHHHHH
Confidence 5566665554
No 255
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=76.24 E-value=48 Score=28.22 Aligned_cols=14 Identities=29% Similarity=0.401 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHH
Q 028596 86 QAQADKERLSKENE 99 (207)
Q Consensus 86 ~a~ee~~kL~kE~~ 99 (207)
........+.+...
T Consensus 145 ~l~~~~e~~ek~~~ 158 (189)
T PF10211_consen 145 ELKNKCEQLEKREE 158 (189)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333334433333
No 256
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=76.19 E-value=70 Score=30.09 Aligned_cols=40 Identities=33% Similarity=0.543 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Q 028596 82 DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQ 124 (207)
Q Consensus 82 ~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDvaKLE~FKk~Lmq 124 (207)
.++.+..++-..+..||..|. ++|.+++++=|++=|+|--
T Consensus 254 ~k~~~~~~eek~ireEN~rLq---r~L~~E~erreal~R~lse 293 (310)
T PF09755_consen 254 EKMAQYLQEEKEIREENRRLQ---RKLQREVERREALCRHLSE 293 (310)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Confidence 555555666666777777775 5788999999999888854
No 257
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=76.18 E-value=12 Score=36.51 Aligned_cols=76 Identities=22% Similarity=0.311 Sum_probs=49.0
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH---
Q 028596 42 STRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSKL--- 115 (207)
Q Consensus 42 atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~---~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDvaKL--- 115 (207)
.+|++.+|.|+..=|.....-+. ..++.++.++-+.- ++|..-..++.-|..|+.+|-.+||.|..|...|
T Consensus 219 ksr~~k~eee~aaERerglqtea---qvek~i~EfdiEre~LRAel~ree~r~K~lKeEmeSLkeiVkdlEA~hQh~~pN 295 (561)
T KOG1103|consen 219 KSRTKKGEEEAAAERERGLQTEA---QVEKLIEEFDIEREFLRAELEREEKRQKMLKEEMESLKEIVKDLEADHQHLRPN 295 (561)
T ss_pred ccccCCChHHHHHHHhhccchHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcc
Confidence 46788888887666654332222 22223333332221 5555666677778899999999999999998876
Q ss_pred HHHHH
Q 028596 116 EVFRK 120 (207)
Q Consensus 116 E~FKk 120 (207)
|.+|+
T Consensus 296 eqLk~ 300 (561)
T KOG1103|consen 296 EQLKG 300 (561)
T ss_pred ccccC
Confidence 56666
No 258
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=76.09 E-value=47 Score=31.70 Aligned_cols=38 Identities=11% Similarity=0.220 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 028596 82 DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFR 119 (207)
Q Consensus 82 ~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDvaKLE~FK 119 (207)
.++..+..+..+|..+...|...+.+|.+++++|..-+
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~l~~~~ 175 (525)
T TIGR02231 138 SEIERLLTEDREAERRIRELEKQLSELQNELNALLTGK 175 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 55566667777777777777777777777777776543
No 259
>PF02388 FemAB: FemAB family; InterPro: IPR003447 The femAB operon codes for two nearly identical approximately 50kDa proteins involved in the formation of the Staphylococcal pentaglycine interpeptide bridge in peptidoglycan []. These proteins are also considered as a factor influencing the level of methicillin resistance [].; GO: 0016755 transferase activity, transferring amino-acyl groups; PDB: 1XE4_A 1NE9_A 3GKR_A 1XIX_A 1P4N_A 1XF8_A 1LRZ_A.
Probab=75.94 E-value=21 Score=33.25 Aligned_cols=53 Identities=15% Similarity=0.319 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 028596 66 IAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFR 119 (207)
Q Consensus 66 i~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDvaKLE~FK 119 (207)
+..|++++..++..+ ++|....+++.+..+.+..|.+++.++.+.++.++.|.
T Consensus 244 ~~~l~~~~~~~~~~i-~~l~~~l~~~~k~~~k~~~~~~q~~~~~k~~~~~~~~~ 296 (406)
T PF02388_consen 244 LESLQEKLEKLEKEI-EKLEEKLEKNPKKKNKLKELEEQLASLEKRIEEAEELI 296 (406)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHHH-THHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555655555555 34444445555677777778888888888888877764
No 260
>PRK04406 hypothetical protein; Provisional
Probab=75.93 E-value=24 Score=26.25 Aligned_cols=43 Identities=9% Similarity=0.134 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028596 64 SRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQR 110 (207)
Q Consensus 64 ~~i~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~~sLa~TVKkL~R 110 (207)
+.|.+|+.|++-.|..+. ...+...+.+++.+.|...++.|..
T Consensus 11 ~Ri~~LE~~lAfQE~tIe----~LN~~v~~Qq~~I~~L~~ql~~L~~ 53 (75)
T PRK04406 11 ERINDLECQLAFQEQTIE----ELNDALSQQQLLITKMQDQMKYVVG 53 (75)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555554 4444445555555666655555543
No 261
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=75.92 E-value=41 Score=27.28 Aligned_cols=34 Identities=35% Similarity=0.510 Sum_probs=22.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 48 LESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (207)
Q Consensus 48 LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~ 81 (207)
|++-...|+++.....+.|.+||.+|+.+-..+-
T Consensus 42 L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le 75 (107)
T PF09304_consen 42 LRNALQSLQAQNASRNQRIAELQAKIDEARRNLE 75 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666666666666667777777777766665554
No 262
>PF11802 CENP-K: Centromere-associated protein K; InterPro: IPR020993 Cenp-K is one of seven new Cenp-A-nucleosome distal (CAD) centromere components (the others being Cenp-L, Cenp-O, Cenp-P, Cenp-Q, Cenp-R and Cenp-S) that are identified as assembling on the Cenp-A nucleosome associated complex, NAC []. The Cenp-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival despite continued centromere-derived mitotic checkpoint signalling. Cenp-K is centromere-associated through its interaction with one or more components of the Cenp-A NAC.; GO: 0005634 nucleus
Probab=75.84 E-value=66 Score=29.68 Aligned_cols=25 Identities=16% Similarity=0.409 Sum_probs=21.5
Q ss_pred HHHHhhhHHHHHHHHHHHHhhcccc
Q 028596 105 VRKLQRDVSKLEVFRKTLVQSLKDD 129 (207)
Q Consensus 105 VKkL~RDvaKLE~FKk~LmqSLq~D 129 (207)
++.|.+-+.+++.|++.||..|.+=
T Consensus 156 ~~el~~K~~~~k~~~e~Ll~~LgeF 180 (268)
T PF11802_consen 156 FQELKTKIEKIKEYKEKLLSFLGEF 180 (268)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3678888899999999999998764
No 263
>PF08898 DUF1843: Domain of unknown function (DUF1843); InterPro: IPR014994 This domain is found in functionally uncharacterised proteins. It can be found independently or at the C terminus of the protein.
Probab=75.84 E-value=10 Score=27.31 Aligned_cols=36 Identities=22% Similarity=0.364 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 028596 82 DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEV 117 (207)
Q Consensus 82 ~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDvaKLE~ 117 (207)
++++.....-.+-..+...|...+.+|+.+++|||.
T Consensus 17 a~MK~l~~~aeq~L~~~~~i~~al~~Lk~EIaklE~ 52 (53)
T PF08898_consen 17 AQMKALAAQAEQQLAEAGDIAAALEKLKAEIAKLEA 52 (53)
T ss_pred HHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHhc
Confidence 677777777777788899999999999999999985
No 264
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=75.83 E-value=69 Score=32.86 Aligned_cols=50 Identities=18% Similarity=0.283 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 31 DVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (207)
Q Consensus 31 dlArkIts~A~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~ 81 (207)
+-|+++....- .++..|=.++...|.++.++.+.+..+.+++..+..+|.
T Consensus 505 ~~A~~~~~~~~-~~~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~ 554 (782)
T PRK00409 505 EEAKKLIGEDK-EKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELE 554 (782)
T ss_pred HHHHHHHhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555544311 144444444444444444444444444444444444333
No 265
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=75.63 E-value=75 Score=30.16 Aligned_cols=52 Identities=19% Similarity=0.133 Sum_probs=28.1
Q ss_pred hHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Q 028596 29 QLDVARKITSIAISTRVSDLESEHSALRSQLA--EKDSRIAELQSQIESIYSSL 80 (207)
Q Consensus 29 QLdlArkIts~A~atRVs~LEsE~~~LR~~La--EKd~~i~eLq~rvs~Le~~L 80 (207)
+|+-...=...|+..++..-+..+..|+..+. .-...+...+.++..+...|
T Consensus 263 rLd~l~~RL~~am~~~L~~~r~rL~~L~~RL~~~~P~~~L~~~~qrLd~L~~RL 316 (432)
T TIGR00237 263 RLDGFNVRLHRAFDTLLHQKKARLEQLVASLQRQHPQNKLALQQLQFEKLEKRK 316 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHH
Confidence 34444444455778888877777777776654 12233444444444444433
No 266
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=75.63 E-value=84 Score=30.78 Aligned_cols=36 Identities=25% Similarity=0.364 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhc
Q 028596 91 KERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSL 126 (207)
Q Consensus 91 ~~kL~kE~~sLa~TVKkL~RDvaKLE~FKk~LmqSL 126 (207)
..+|......|...-+.|..-..+++.+.....+-|
T Consensus 103 e~~Le~ke~~L~~re~eLee~~~e~~~~~~~~~~~l 138 (514)
T TIGR03319 103 EENLEKKEKELSNKEKNLDEKEEELEELIAEQREEL 138 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444444444444444433
No 267
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=75.47 E-value=33 Score=37.63 Aligned_cols=49 Identities=16% Similarity=0.260 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccccC
Q 028596 83 KLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLKDDED 131 (207)
Q Consensus 83 rL~~a~ee~~kL~kE~~sLa~TVKkL~RDvaKLE~FKk~LmqSLq~D~~ 131 (207)
+-.+..+....|.++..+|.++.+.++.++.|++-+||..+..+++-+.
T Consensus 617 ~~~~~~e~~~~l~~~i~sL~~~~~~~~~~l~k~~el~r~~~e~~~~~ek 665 (1317)
T KOG0612|consen 617 QRTEISEIIAELKEEISSLEETLKAGKKELLKVEELKRENQERISDSEK 665 (1317)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566778899999999999999999999999999999988776544
No 268
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion
Probab=75.46 E-value=39 Score=28.90 Aligned_cols=35 Identities=31% Similarity=0.395 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHhhhHHHHH
Q 028596 82 DKLGQAQADKERLSKENEAL-------TNTVRKLQRDVSKLE 116 (207)
Q Consensus 82 ~rL~~a~ee~~kL~kE~~sL-------a~TVKkL~RDvaKLE 116 (207)
.||.+-.+++..|..-|.-| -.+-..|..|+.||-
T Consensus 67 ~rLeEEqqR~~~L~qvN~lLReQLEq~~~~N~~L~~dl~klt 108 (182)
T PF15035_consen 67 IRLEEEQQRSEELAQVNALLREQLEQARKANEALQEDLQKLT 108 (182)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555655555555 344455555665543
No 269
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=75.20 E-value=27 Score=24.93 Aligned_cols=50 Identities=18% Similarity=0.314 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 028596 62 KDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKL 115 (207)
Q Consensus 62 Kd~~i~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDvaKL 115 (207)
+...-.+||.-|-.=-..+. .+-++..+|..+-..|.+.+..|+..+.+|
T Consensus 35 i~~~~~eLr~~V~~nY~~fI----~as~~I~~m~~~~~~l~~~l~~l~~~~~~l 84 (87)
T PF08700_consen 35 IEEKDEELRKLVYENYRDFI----EASDEISSMENDLSELRNLLSELQQSIQSL 84 (87)
T ss_pred HHHHHHHHHHHHHhhHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333444444444444444 888888888888888888888888887765
No 270
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=75.17 E-value=45 Score=32.99 Aligned_cols=78 Identities=21% Similarity=0.269 Sum_probs=45.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 028596 45 VSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQA-DKERLSKENEALTNTVRKLQRDVSKLEVFRKTLV 123 (207)
Q Consensus 45 Vs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~~rL~~a~e-e~~kL~kE~~sLa~TVKkL~RDvaKLE~FKk~Lm 123 (207)
|.-|=+++..+|.++++=......|+++-+.|....+ ...+ =+..|+.++..|......|..++.+|...-..|.
T Consensus 61 lrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~----~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~ 136 (472)
T TIGR03752 61 LRTLVAEVKELRKRLAKLISENEALKAENERLQKREQ----SIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQLQ 136 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----hHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566777777777777777777777666554443 1222 2233445555555566666666666655555555
Q ss_pred hhc
Q 028596 124 QSL 126 (207)
Q Consensus 124 qSL 126 (207)
+.|
T Consensus 137 ~~l 139 (472)
T TIGR03752 137 RRL 139 (472)
T ss_pred HHH
Confidence 544
No 271
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=75.15 E-value=44 Score=27.33 Aligned_cols=69 Identities=17% Similarity=0.247 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Q 028596 31 DVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS--DKLGQAQADKERLSKENEAL 101 (207)
Q Consensus 31 dlArkIts~A~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~--~rL~~a~ee~~kL~kE~~sL 101 (207)
.||. .++++..|+...|.++.++-.++.|+.......-+.++.++.--. .|....+++..-+-+.-+++
T Consensus 46 ~Va~--~Q~~L~~riKevd~~~~~l~~~~~erqk~~~k~ae~L~kv~els~~L~~~~~lL~~~v~~ie~LN~~ 116 (131)
T PF10158_consen 46 AVAF--DQNALAKRIKEVDQEIAKLLQQMVERQKRFAKFAEQLEKVNELSQQLSRCQSLLNQTVPSIETLNEI 116 (131)
T ss_pred HHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
No 272
>PRK04325 hypothetical protein; Provisional
Probab=75.01 E-value=24 Score=26.10 Aligned_cols=41 Identities=22% Similarity=0.215 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028596 66 IAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQR 110 (207)
Q Consensus 66 i~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~~sLa~TVKkL~R 110 (207)
|.+|+.|++-.|..+. ...+...+.+++.+.|...++.|..
T Consensus 11 i~~LE~klAfQE~tIe----~LN~vv~~Qq~~I~~L~~ql~~L~~ 51 (74)
T PRK04325 11 ITELEIQLAFQEDLID----GLNATVARQQQTLDLLQAQLRLLYQ 51 (74)
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444443333 4444445555555555555555543
No 273
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=74.99 E-value=20 Score=26.81 Aligned_cols=64 Identities=27% Similarity=0.317 Sum_probs=39.5
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028596 39 IAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS-DKLGQAQADKERLSKENEALTNTVRKLQ 109 (207)
Q Consensus 39 ~A~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~-~rL~~a~ee~~kL~kE~~sLa~TVKkL~ 109 (207)
.|++.-+-.||.|.+.|+-..++ |++++..++.+.. .+=+....+...|.+.-..=+++|.+|.
T Consensus 13 ~~Ls~vl~~LqDE~~hm~~e~~~-------L~~~~~~~d~s~~~~~R~~L~~~l~~lv~~mE~K~dQI~~L~ 77 (79)
T PF06657_consen 13 EALSEVLKALQDEFGHMKMEHQE-------LQDEYKQMDPSLGRRKRRDLEQELEELVKRMEAKADQIYKLY 77 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHhcccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 47788888999999999887665 4455555555554 2223334445555555555555555553
No 274
>PF05781 MRVI1: MRVI1 protein; InterPro: IPR008677 This family consists of mammalian MRVI1 proteins which are related to the lymphoid-restricted membrane protein (JAW1) and the IP3 receptor associated cGMP kinase substrates A and B (IRAGA and IRAGB). The function of MRVI1 is unknown although mutations in the Mrvi1 gene induces myeloid leukaemia by altering the expression of a gene important for myeloid cell growth and/or differentiation so it has been speculated that Mrvi1 is a tumour suppressor gene []. IRAG is very similar in sequence to MRVI1 and is an essential NO/cGKI-dependent regulator of IP3-induced calcium release. Activation of cGKI decreases IP3-stimulated elevations in intracellular calcium, induces smooth muscle relaxation and contributes to the antiproliferative and pro-apoptotic effects of NO/cGMP []. Jaw1 is a member of a class of proteins with COOH-terminal hydrophobic membrane anchors and is structurally similar to proteins involved in vesicle targeting and fusion. This suggests that the function and/or the structure of the ER in lymphocytes may be modified by lymphoid-restricted resident ER proteins [].
Probab=74.86 E-value=88 Score=31.54 Aligned_cols=98 Identities=22% Similarity=0.305 Sum_probs=53.3
Q ss_pred chhhHHHHHHHHHHHHHHhhhh-----------hHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHH
Q 028596 26 PFEQLDVARKITSIAISTRVSD-----------LESEHSALRSQLAEK----------DSRIAELQSQIESIYSSLSDKL 84 (207)
Q Consensus 26 P~EQLdlArkIts~A~atRVs~-----------LEsE~~~LR~~LaEK----------d~~i~eLq~rvs~Le~~L~~rL 84 (207)
-|-||-||+|.=..-+..|+.. |+.||+..+..|..= .+.|..|+..+.-|.+.. .|+
T Consensus 196 ~F~~lsL~f~~D~~TLe~R~~~~eR~RdlaEeNl~kEi~~~~~~l~~l~~lc~~d~e~~e~~~kl~~~l~~l~~~~-~rv 274 (538)
T PF05781_consen 196 EFLRLSLGFKCDRFTLEKRLKLEERSRDLAEENLKKEIENCLKLLESLAPLCWEDNESREIIQKLQKSLDVLHQCA-TRV 274 (538)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 3779999999999999999864 444555555544321 122233333333222222 222
Q ss_pred HHHHHHH------HHHHHHHHHHHHHHHHHhh----hHHHHHHHHHHHHh
Q 028596 85 GQAQADK------ERLSKENEALTNTVRKLQR----DVSKLEVFRKTLVQ 124 (207)
Q Consensus 85 ~~a~ee~------~kL~kE~~sLa~TVKkL~R----DvaKLE~FKk~Lmq 124 (207)
.-.-+.. .++.+--....+-|..|.| +-+.|+-|||.|+|
T Consensus 275 ss~AE~lGAv~QE~R~SkAvevM~qhvenLkr~~~kehaeL~E~k~~l~q 324 (538)
T PF05781_consen 275 SSRAEMLGAVHQESRVSKAVEVMIQHVENLKRMYEKEHAELEELKKLLLQ 324 (538)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 2222211 2233434445555555554 55669999999887
No 275
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=74.77 E-value=33 Score=25.74 Aligned_cols=78 Identities=23% Similarity=0.313 Sum_probs=45.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhc
Q 028596 48 LESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSL 126 (207)
Q Consensus 48 LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDvaKLE~FKk~LmqSL 126 (207)
.=.++-.|-++..+-...+.+|+.+.+.+-.++. .++..-++...|..|-..|...++.|..++..++.=-..++-+|
T Consensus 27 ~vd~i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~-~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~l~~i 104 (108)
T PF02403_consen 27 DVDEIIELDQERRELQQELEELRAERNELSKEIG-KLKKAGEDAEELKAEVKELKEEIKELEEQLKELEEELNELLLSI 104 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3344455555555555556666666666666654 22222245566666666777777777777777666555555544
No 276
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=74.65 E-value=83 Score=30.86 Aligned_cols=72 Identities=18% Similarity=0.300 Sum_probs=49.1
Q ss_pred CCCCChHHHHhh---CCCCc-----------hhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH--HHHHHHHHHHHHH
Q 028596 10 STFDLPEEVLQV---LPSDP-----------FEQLDVARKITSIAISTRVSDLESEHSALRSQLA--EKDSRIAELQSQI 73 (207)
Q Consensus 10 ~~f~Lp~eilsv---LP~DP-----------~EQLdlArkIts~A~atRVs~LEsE~~~LR~~La--EKd~~i~eLq~rv 73 (207)
.||.|+|-+.-+ -|+.. -++|+-.++...+|+..++..-+..+..|+..+. .-++.+..-+.++
T Consensus 236 tD~tL~DfVAD~RApTPTaAAE~~vP~~~el~~~l~~~~~rL~~~~~~~l~~~~~~l~~l~~~l~~~~p~~~l~~~~q~l 315 (440)
T COG1570 236 TDFTLADFVADLRAPTPTAAAELVVPDSAELLQQLDQLQRRLHRALRRLLDQKKQRLEHLARRLQFRSPERLLSEQQQRL 315 (440)
T ss_pred CCccHHHhhhhccCCCchHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 478887766533 23222 2456666666777889999888888888888887 6666676666666
Q ss_pred HHHHHHHH
Q 028596 74 ESIYSSLS 81 (207)
Q Consensus 74 s~Le~~L~ 81 (207)
..+...|.
T Consensus 316 d~~~~rL~ 323 (440)
T COG1570 316 DELAIRLR 323 (440)
T ss_pred HHHHHHHH
Confidence 66665555
No 277
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=74.64 E-value=33 Score=26.29 Aligned_cols=61 Identities=18% Similarity=0.373 Sum_probs=42.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 028596 44 RVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLV 123 (207)
Q Consensus 44 RVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDvaKLE~FKk~Lm 123 (207)
|+.++..|+.+-|.++ .++|.|+-.|+.+.. .-||......|+.++=+...|-.|-+..-
T Consensus 2 KleKi~~eieK~k~Ki-------ae~Q~rlK~Le~qk~-------------E~EN~EIv~~VR~~~mtp~eL~~~L~~~~ 61 (83)
T PF14193_consen 2 KLEKIRAEIEKTKEKI-------AELQARLKELEAQKT-------------EAENLEIVQMVRSMKMTPEELAAFLRAMK 61 (83)
T ss_pred hHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 4566677777777554 455555555555443 45677788889999999999999988764
Q ss_pred h
Q 028596 124 Q 124 (207)
Q Consensus 124 q 124 (207)
.
T Consensus 62 ~ 62 (83)
T PF14193_consen 62 S 62 (83)
T ss_pred h
Confidence 4
No 278
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=74.51 E-value=43 Score=36.29 Aligned_cols=68 Identities=16% Similarity=0.220 Sum_probs=32.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028596 44 RVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSS-------LSDKLGQAQADKERLSKENEALTNTVRKLQRD 111 (207)
Q Consensus 44 RVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~-------L~~rL~~a~ee~~kL~kE~~sLa~TVKkL~RD 111 (207)
++..++.++...++.+.+-...+..++.++..++.. +..+|.+..++...+.++...+...+..+...
T Consensus 883 ~le~ae~~l~~~~~e~~~~~~e~~~a~~~l~~l~e~l~~~~eel~a~L~e~r~rL~~l~~el~~~~~~~~~a~~~ 957 (1353)
T TIGR02680 883 RAARAESDAREAAEDAAEARAEAEEASLRLRTLEESVGAMVDEIRARLAETRAALASGGRELPRLAEALATAEEA 957 (1353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444443333333 33555666666666666655555544444333
No 279
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=74.40 E-value=14 Score=31.91 Aligned_cols=16 Identities=38% Similarity=0.532 Sum_probs=6.6
Q ss_pred hhhhhHHHHHHHHHHH
Q 028596 44 RVSDLESEHSALRSQL 59 (207)
Q Consensus 44 RVs~LEsE~~~LR~~L 59 (207)
|+..|+.+..+|+.-|
T Consensus 140 rl~~l~~~~~rl~~ll 155 (262)
T PF14257_consen 140 RLKNLEAEEERLLELL 155 (262)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444444333
No 280
>PF15480 DUF4640: Domain of unknown function (DUF4640)
Probab=74.26 E-value=2.9 Score=38.71 Aligned_cols=31 Identities=29% Similarity=0.382 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Q 028596 92 ERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQ 124 (207)
Q Consensus 92 ~kL~kE~~sLa~TVKkL~RDvaKLE~FKk~Lmq 124 (207)
.|..+|+. ..|+.||+.-|.|||+|..+...
T Consensus 104 Dk~pee~t--~lt~~kLd~lvQklEtflen~k~ 134 (292)
T PF15480_consen 104 DKYPEEKT--KLTLSKLDNLVQKLETFLENQKD 134 (292)
T ss_pred ccChhhcc--ccchhhhhhHHHHHHHHHHhhcc
Confidence 34555554 45899999999999999988554
No 281
>PF11488 Lge1: Transcriptional regulatory protein LGE1
Probab=74.14 E-value=33 Score=25.42 Aligned_cols=47 Identities=15% Similarity=0.133 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHH
Q 028596 52 HSALRSQLAEKDSRIAELQSQIESIYSSLS--DKLGQAQADKERLSKEN 98 (207)
Q Consensus 52 ~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~--~rL~~a~ee~~kL~kE~ 98 (207)
+..--..+..++..|.+|+.++-.++..+. ..-...++-+.+|+.||
T Consensus 25 l~~~~~ei~~~d~~le~l~~q~~k~~~~~~~L~~~~~r~~l~vQlt~Ek 73 (80)
T PF11488_consen 25 LESRFKEIDSKDKELEELYQQDCKTEMEVKMLETQDPRDELNVQLTQEK 73 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHhHHHHHHh
Confidence 444445556777888888777777775554 22222333344555554
No 282
>PRK08032 fliD flagellar capping protein; Reviewed
Probab=73.96 E-value=41 Score=32.07 Aligned_cols=57 Identities=14% Similarity=0.184 Sum_probs=28.0
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNT 104 (207)
Q Consensus 41 ~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~~sLa~T 104 (207)
+..|...|+.++.+|- ..|..+++|+..+|..|..+....+.-..+|+...+.|.++
T Consensus 404 l~~~~~~l~~~i~~l~-------~~i~~~~~rl~~~e~rl~~qF~ame~~~s~mns~~s~L~~q 460 (462)
T PRK08032 404 IKTATDGVNKTLKKLT-------KQYNAVSDSIDATIARYKAQFTQLDKLMTSLNSTSSYLTQQ 460 (462)
T ss_pred chhHHhHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444444444444443 44444444444444444444445555555666666666554
No 283
>PF14389 Lzipper-MIP1: Leucine-zipper of ternary complex factor MIP1
Probab=73.73 E-value=19 Score=27.30 Aligned_cols=67 Identities=25% Similarity=0.282 Sum_probs=37.0
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H---HH-HHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 028596 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---D---KL-GQAQADKERLSKENEALTNTVRKLQRDVS 113 (207)
Q Consensus 41 ~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~---~---rL-~~a~ee~~kL~kE~~sLa~TVKkL~RDva 113 (207)
...+-+.||.||..|..+|.+=...-.. |+.+|. . .+ ...-.....|-.|-..|...|-+|.+.|.
T Consensus 6 ~~~~r~~LeqeV~~Lq~~L~~E~~~r~a-------Le~al~~~~~~~~~~~~~lp~~~keLL~EIA~lE~eV~~LE~~v~ 78 (88)
T PF14389_consen 6 LHERRSALEQEVAELQKQLQEEQDLRRA-------LEKALGRSSGSLPSSPSSLPKKAKELLEEIALLEAEVAKLEQKVL 78 (88)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHhCCCCcccCCccccCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456678999999999999854333333 444544 0 00 11122334455555555555555555444
Q ss_pred H
Q 028596 114 K 114 (207)
Q Consensus 114 K 114 (207)
-
T Consensus 79 ~ 79 (88)
T PF14389_consen 79 S 79 (88)
T ss_pred H
Confidence 3
No 284
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=73.60 E-value=78 Score=29.44 Aligned_cols=33 Identities=21% Similarity=0.395 Sum_probs=20.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 48 LESEHSALRSQLAEKDSRIAELQSQIESIYSSL 80 (207)
Q Consensus 48 LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L 80 (207)
|-+.+++++..|.+-.+.|.+|++++..|+.++
T Consensus 72 l~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i 104 (301)
T PF06120_consen 72 LRANIAKAEESIAAQKRAIEDLQKKIDSLKDQI 104 (301)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444566666666666666666666666666555
No 285
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=73.57 E-value=29 Score=32.58 Aligned_cols=29 Identities=14% Similarity=0.424 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 028596 89 ADKERLSKENEALTNTVRKLQRDVSKLEV 117 (207)
Q Consensus 89 ee~~kL~kE~~sLa~TVKkL~RDvaKLE~ 117 (207)
+...+|.+.+..|...+++|...+..|+.
T Consensus 375 ~~~~~l~~~~~~l~~~~~~l~~~~~~l~~ 403 (451)
T PF03961_consen 375 EQLKKLKEKKKELKEELKELKEELKELKE 403 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444433
No 286
>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []. ; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=73.40 E-value=18 Score=24.72 Aligned_cols=26 Identities=35% Similarity=0.511 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028596 86 QAQADKERLSKENEALTNTVRKLQRD 111 (207)
Q Consensus 86 ~a~ee~~kL~kE~~sLa~TVKkL~RD 111 (207)
....++..|.+||+.|...|..|..-
T Consensus 16 ~Lk~~~~~L~~E~~~L~aev~~L~~k 41 (45)
T PF02183_consen 16 SLKAEYDSLKKENEKLRAEVQELKEK 41 (45)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566777888888888887777654
No 287
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=73.27 E-value=1.1e+02 Score=31.16 Aligned_cols=12 Identities=25% Similarity=0.285 Sum_probs=9.4
Q ss_pred cceeEEeecCCC
Q 028596 185 DFTWLRVSIPNK 196 (207)
Q Consensus 185 ~~~~~~~~~~~~ 196 (207)
.|.|-+|--|..
T Consensus 361 ~f~fdkVf~p~~ 372 (670)
T KOG0239|consen 361 SFKFDKVFGPLA 372 (670)
T ss_pred cceeeeecCCcc
Confidence 788888887754
No 288
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=73.16 E-value=42 Score=33.14 Aligned_cols=70 Identities=16% Similarity=0.278 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 028596 45 VSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVF 118 (207)
Q Consensus 45 Vs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDvaKLE~F 118 (207)
+..++.|..++-+.+...+..|..+-.+++.+..++.+|-....++-.+|+. |...--.|.+.|+.||..
T Consensus 212 ~q~r~~ela~r~aa~Qq~~q~i~qrd~~i~q~~q~iaar~e~I~~re~~lq~----lEt~q~~leqeva~le~y 281 (499)
T COG4372 212 AQARTEELARRAAAAQQTAQAIQQRDAQISQKAQQIAARAEQIRERERQLQR----LETAQARLEQEVAQLEAY 281 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
No 289
>COG3879 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=73.08 E-value=23 Score=32.22 Aligned_cols=29 Identities=21% Similarity=0.446 Sum_probs=12.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 47 DLESEHSALRSQLAEKDSRIAELQSQIES 75 (207)
Q Consensus 47 ~LEsE~~~LR~~LaEKd~~i~eLq~rvs~ 75 (207)
.|..|++.+++++.+...++.++++++.+
T Consensus 54 ~L~~e~~s~Q~~~~~L~~ev~~~~~~~~s 82 (247)
T COG3879 54 DLVKELRSLQKKVNTLAAEVEDLENKLDS 82 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444444333
No 290
>KOG4687 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=73.07 E-value=61 Score=30.91 Aligned_cols=82 Identities=26% Similarity=0.399 Sum_probs=54.4
Q ss_pred HHHHhhhhhHHHHHHHHHHHH----HHHH---HHHHHHHHHHHHHHHHH---------------------HHHHHHHHHH
Q 028596 40 AISTRVSDLESEHSALRSQLA----EKDS---RIAELQSQIESIYSSLS---------------------DKLGQAQADK 91 (207)
Q Consensus 40 A~atRVs~LEsE~~~LR~~La----EKd~---~i~eLq~rvs~Le~~L~---------------------~rL~~a~ee~ 91 (207)
|+-.+...-=.-++.|++.|. ||+. ....|+-+++.+++.++ +-+....++|
T Consensus 20 AlhqK~~aKtdairiL~QdLEkfe~Ekd~~a~~aETLeln~ealere~eLlaa~gc~a~~e~gterqdLaa~i~etkeeN 99 (389)
T KOG4687|consen 20 ALHQKCGAKTDAIRILGQDLEKFENEKDGLAARAETLELNLEALERELELLAACGCDAKIEFGTERQDLAADIEETKEEN 99 (389)
T ss_pred HHHHHhcccHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHhcCCCchhhccchhhHHHHHHHHHHHHh
Confidence 454444444445677777775 4543 34677888888887765 2344566778
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Q 028596 92 ERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQ 124 (207)
Q Consensus 92 ~kL~kE~~sLa~TVKkL~RDvaKLE~FKk~Lmq 124 (207)
.||.-++..|-++.-.|..|. |.|+.|.-|
T Consensus 100 lkLrTd~eaL~dq~adLhgD~---elfReTeAq 129 (389)
T KOG4687|consen 100 LKLRTDREALLDQKADLHGDC---ELFRETEAQ 129 (389)
T ss_pred HhhhHHHHHHHHHHHHHhchH---HHHHHHHHH
Confidence 888888888888888888875 566666543
No 291
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=73.04 E-value=47 Score=35.50 Aligned_cols=17 Identities=18% Similarity=0.288 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 028596 64 SRIAELQSQIESIYSSL 80 (207)
Q Consensus 64 ~~i~eLq~rvs~Le~~L 80 (207)
+.+.+|.+++..+.++.
T Consensus 466 ~~~~~L~d~le~~~~~~ 482 (980)
T KOG0980|consen 466 EENTNLNDQLEELQRAA 482 (980)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33334444444443333
No 292
>PF13514 AAA_27: AAA domain
Probab=72.84 E-value=45 Score=34.95 Aligned_cols=61 Identities=18% Similarity=0.336 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 028596 62 KDSRIAELQSQIESIYSSLS------DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTL 122 (207)
Q Consensus 62 Kd~~i~eLq~rvs~Le~~L~------~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDvaKLE~FKk~L 122 (207)
+...|..+-+++..++.++. .......++...+..+...|....+.|..+..+|+.+++.+
T Consensus 148 ~~~~in~~l~~l~e~~~~l~~~~~~~~~y~~l~~~~~~~~~~~~~l~~~~~~l~~~~~~ler~~~~~ 214 (1111)
T PF13514_consen 148 RKPEINQALKELKELERELREAEVRAAEYQELQQALEEAEEELEELRAELKELRAELRRLERLRRAW 214 (1111)
T ss_pred CChHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34466777777888887777 66777888888899999999999999999999999987753
No 293
>PF11855 DUF3375: Protein of unknown function (DUF3375); InterPro: IPR021804 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 479 to 499 amino acids in length.
Probab=72.81 E-value=32 Score=33.02 Aligned_cols=96 Identities=18% Similarity=0.271 Sum_probs=69.8
Q ss_pred HHHHHhhhhhHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 028596 39 IAISTRVSDLESEHSALRSQLA-EKDSRIAELQSQIESIYSSLSDKLGQA---QADKERLSKENEALTNTVRKLQRDVSK 114 (207)
Q Consensus 39 ~A~atRVs~LEsE~~~LR~~La-EKd~~i~eLq~rvs~Le~~L~~rL~~a---~ee~~kL~kE~~sLa~TVKkL~RDvaK 114 (207)
.+=.+|+..+=.++..|..... +.+..|+.|+++...++.++. +|..= .=+..++.++-..+.+++..|-.|...
T Consensus 118 ~~TeSRl~tv~~~l~~la~~~~~Dp~~Ri~~Le~e~~~i~~EI~-~l~aG~~~~ld~~~~~er~~~i~~la~~L~~DFr~ 196 (478)
T PF11855_consen 118 VGTESRLNTVFDALRQLAEGTDPDPERRIAELEREIAEIDAEID-RLEAGDVPVLDDTQARERARQILQLARELPADFRR 196 (478)
T ss_pred cccHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3667899999999999999998 999999999999999999996 22211 112356677777888888888888888
Q ss_pred HHHHHHH----HHhhcccccCCCCC
Q 028596 115 LEVFRKT----LVQSLKDDEDASTG 135 (207)
Q Consensus 115 LE~FKk~----LmqSLq~D~~~~~~ 135 (207)
.+.-=|. |-..+.+++.+-++
T Consensus 197 V~~~~r~l~r~lr~~i~~~~~~~G~ 221 (478)
T PF11855_consen 197 VEDNFRELDRALRERIIDWDGSRGE 221 (478)
T ss_pred HHHHHHHHHHHHHHHHhhccccHHH
Confidence 7654444 44444555544443
No 294
>PF13864 Enkurin: Calmodulin-binding
Probab=72.66 E-value=9 Score=29.08 Aligned_cols=56 Identities=21% Similarity=0.384 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 028596 60 AEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEV 117 (207)
Q Consensus 60 aEKd~~i~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDvaKLE~ 117 (207)
.|+...+..|+.+...|..+|+ +|... -+-.....-+..|...++-|..|+.+|+.
T Consensus 40 eER~~lL~~Lk~~~~el~~ey~-~lp~~-~DT~~~~~rK~~lE~~L~qlE~dI~~lsr 95 (98)
T PF13864_consen 40 EERQELLEGLKKNWDELNKEYQ-KLPFS-IDTLRKKRRKEELEKELKQLEKDIKKLSR 95 (98)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-hCCcc-cCCHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 4788899999999999999998 33333 22344445555666666666666666653
No 295
>TIGR01554 major_cap_HK97 phage major capsid protein, HK97 family. This family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=72.64 E-value=26 Score=31.86 Aligned_cols=8 Identities=25% Similarity=0.451 Sum_probs=3.7
Q ss_pred HHHHHHHH
Q 028596 115 LEVFRKTL 122 (207)
Q Consensus 115 LE~FKk~L 122 (207)
...|++.+
T Consensus 86 ~~~~~~~~ 93 (378)
T TIGR01554 86 VRAFIKGV 93 (378)
T ss_pred HHHHHHHh
Confidence 34455543
No 296
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=72.61 E-value=23 Score=33.24 Aligned_cols=63 Identities=24% Similarity=0.417 Sum_probs=34.6
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH---------HHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 028596 43 TRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS-DK---------LGQAQADKERLSKENEALTNTVRKLQRDV 112 (207)
Q Consensus 43 tRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~-~r---------L~~a~ee~~kL~kE~~sLa~TVKkL~RDv 112 (207)
.+|..||....+|+..-..|.= ++.+||++|+ .| ......++..|.+.-++|..+-.||..|+
T Consensus 18 qKIqelE~QldkLkKE~qQrQf-------QleSlEAaLqKQKqK~e~ek~e~s~LkREnq~l~e~c~~lek~rqKlshdl 90 (307)
T PF10481_consen 18 QKIQELEQQLDKLKKERQQRQF-------QLESLEAALQKQKQKVEEEKNEYSALKRENQSLMESCENLEKTRQKLSHDL 90 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHhhHHH
Confidence 5788999999999865544443 3445566666 11 11222333444444445555555554443
No 297
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure. They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
Probab=72.36 E-value=38 Score=32.64 Aligned_cols=42 Identities=29% Similarity=0.462 Sum_probs=28.2
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHH----------HHH---H-----HHHHHHHHHHHHHHH
Q 028596 40 AISTRVSDLESEHSALRSQLAEK----------DSR---I-----AELQSQIESIYSSLS 81 (207)
Q Consensus 40 A~atRVs~LEsE~~~LR~~LaEK----------d~~---i-----~eLq~rvs~Le~~L~ 81 (207)
+++.+...++.|+..||.++.+- ... + ..|++|+..|+.++.
T Consensus 113 ~lk~~l~e~~~El~~l~~~l~~l~~~~~~~~~~~~~~~~l~~~~~~sL~ekl~lld~al~ 172 (511)
T PF09787_consen 113 VLKIRLQELDQELRRLRRQLEELQNEKSRILSDESTVSRLQNGAPRSLQEKLSLLDEALK 172 (511)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 45677788888888888888764 112 2 556666666666665
No 298
>TIGR00020 prfB peptide chain release factor 2. In many but not all taxa, there is a conserved real translational frameshift at a TGA codon. RF-2 helps terminate translation at TGA codons and can therefore regulate its own production by readthrough when RF-2 is insufficient. There is a Pfam model called "RF-1" for the superfamily of RF-1, RF-2, mitochondrial, RF-H, etc.
Probab=72.32 E-value=82 Score=29.94 Aligned_cols=86 Identities=16% Similarity=0.295 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH---H---
Q 028596 31 DVARKITSIAISTRVSDLESEHSALRSQLAEK-----DSRIAELQSQIESIYSSLS--DKLGQAQADKERLSK---E--- 97 (207)
Q Consensus 31 dlArkIts~A~atRVs~LEsE~~~LR~~LaEK-----d~~i~eLq~rvs~Le~~L~--~rL~~a~ee~~kL~k---E--- 97 (207)
+++.++-..+=...+..++.+...|...+.+- ......+-++++.|...+. .++....++...|.+ +
T Consensus 11 ~~~~~~~~~~~~~~l~~~~~~~~~le~~~~~p~~w~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~d~~~l~el~~~e~D 90 (364)
T TIGR00020 11 DLTSRLDTVRGSLDPEKKKARLEELEKEMEDPNFWNDQERAQAVIKERSSLEAVLDTLEELKNSLEDLSELLELAVEEDD 90 (364)
T ss_pred HHHHHHHHHHhhCCHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 35566655554555666666666666666532 2334444455555555444 444444444433322 1
Q ss_pred ---HHHHHHHHHHHhhhHHHHH
Q 028596 98 ---NEALTNTVRKLQRDVSKLE 116 (207)
Q Consensus 98 ---~~sLa~TVKkL~RDvaKLE 116 (207)
+..+...++.|.+++.+||
T Consensus 91 ~e~~~~a~~e~~~l~~~l~~le 112 (364)
T TIGR00020 91 EETFNELDAELKALEKKLAELE 112 (364)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 2345567888999999998
No 299
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=72.09 E-value=1.2e+02 Score=31.73 Aligned_cols=25 Identities=16% Similarity=0.243 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHH
Q 028596 98 NEALTNTVRKLQRDVSKLEVFRKTL 122 (207)
Q Consensus 98 ~~sLa~TVKkL~RDvaKLE~FKk~L 122 (207)
...+......+..+..+|+..++.+
T Consensus 262 ~~~~~~~~~~~~~~~~~l~~~~~~~ 286 (1042)
T TIGR00618 262 LKQLRARIEELRAQEAVLEETQERI 286 (1042)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444445555555555444443
No 300
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=72.01 E-value=53 Score=30.73 Aligned_cols=32 Identities=19% Similarity=0.267 Sum_probs=22.9
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHhhcccccCCC
Q 028596 102 TNTVRKLQRDVSKLEVFRKTLVQSLKDDEDAS 133 (207)
Q Consensus 102 a~TVKkL~RDvaKLE~FKk~LmqSLq~D~~~~ 133 (207)
......|.||+.-.++.=.++++..|+.....
T Consensus 372 ~~~l~~L~Re~~~~r~~ye~lL~r~qe~~~~~ 403 (458)
T COG3206 372 QVQLRELEREAEAARSLYETLLQRYQELSIQE 403 (458)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34456677888777777788888888776554
No 301
>KOG4074 consensus Leucine zipper nuclear factor [Function unknown]
Probab=71.99 E-value=43 Score=32.05 Aligned_cols=73 Identities=22% Similarity=0.274 Sum_probs=55.2
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 028596 42 STRVSDLESEHSALRSQLAEKDSRIAELQSQ-IESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSK 114 (207)
Q Consensus 42 atRVs~LEsE~~~LR~~LaEKd~~i~eLq~r-vs~Le~~L~~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDvaK 114 (207)
+.|-.+||.|..-||.+|-=-.....+|.+= +.++-..||.+.....+|+.+|+.+++.+.+....+.-++.+
T Consensus 136 Sere~~l~~e~~~l~~ql~iqt~vNsELK~LlVASvgddLQ~~ve~LtedK~qLa~~~~~~~~nl~~~~Eq~er 209 (383)
T KOG4074|consen 136 SEREAELERELDLLRKQLNIQTKVNSELKRLLVASVGDDLQGQVEALTEDKVQLAHRVDEYMGNLMVEDEQSER 209 (383)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHH
Confidence 4566689999999999998777777777643 456666777777888899999999998888776655444443
No 302
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=71.96 E-value=42 Score=26.39 Aligned_cols=37 Identities=24% Similarity=0.359 Sum_probs=24.6
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESI 76 (207)
Q Consensus 40 A~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~L 76 (207)
++..-...|+.+...++.++..+...+..+++++...
T Consensus 33 ~~k~~~~~l~~~~~~~~~~l~~~~~el~~~~~~l~~~ 69 (158)
T PF03938_consen 33 AGKDAQAKLQEKFKALQKELQAKQKELQKLQQKLQSQ 69 (158)
T ss_dssp HHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566666777777777777777777666666555443
No 303
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=71.85 E-value=43 Score=25.75 Aligned_cols=42 Identities=29% Similarity=0.322 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcc
Q 028596 86 QAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLK 127 (207)
Q Consensus 86 ~a~ee~~kL~kE~~sLa~TVKkL~RDvaKLE~FKk~LmqSLq 127 (207)
...+-..-|.+..+.|...+++|+.++.+|..--.++++-|+
T Consensus 83 ~~~eA~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~i~~~l~ 124 (126)
T TIGR00293 83 DAEEAIEFLKKRIEELEKAIEKLQEALAELASRAQQLEQEAQ 124 (126)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344555667778888888888888888888887777776554
No 304
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=71.47 E-value=42 Score=33.69 Aligned_cols=31 Identities=26% Similarity=0.320 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 49 ESEHSALRSQLAEKDSRIAELQSQIESIYSS 79 (207)
Q Consensus 49 EsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~ 79 (207)
|.|+..+|.-+.+=.+..+.++..+..|..+
T Consensus 91 e~El~~ar~~l~e~~~~ra~~e~ei~kl~~e 121 (546)
T KOG0977|consen 91 EAELATARKLLDETARERAKLEIEITKLREE 121 (546)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 4555555555555444444444444443333
No 305
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=71.43 E-value=61 Score=28.73 Aligned_cols=37 Identities=24% Similarity=0.331 Sum_probs=17.7
Q ss_pred hHHHHHHHHHH--------HHHHhhhhhHHHHHHHHHHHHHHHHH
Q 028596 29 QLDVARKITSI--------AISTRVSDLESEHSALRSQLAEKDSR 65 (207)
Q Consensus 29 QLdlArkIts~--------A~atRVs~LEsE~~~LR~~LaEKd~~ 65 (207)
|.+|+.|.--+ -..+.+...|.++..|+..+..|...
T Consensus 23 q~E~~~K~~Eiv~Lr~ql~e~~~~l~~~~~~~~~l~~~~~~K~~E 67 (202)
T PF06818_consen 23 QAEVNQKDSEIVSLRAQLRELRAELRNKESQIQELQDSLRTKQLE 67 (202)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhHh
Confidence 55666554333 23334444455555555544444444
No 306
>PF11285 DUF3086: Protein of unknown function (DUF3086); InterPro: IPR021437 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=71.43 E-value=11 Score=34.88 Aligned_cols=58 Identities=24% Similarity=0.382 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHhhcccc
Q 028596 65 RIAELQSQIESIYSSLSDKLGQAQADKERLSKEN-EALTNTVRKLQRDVSKLEVFRKTLVQSLKDD 129 (207)
Q Consensus 65 ~i~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~-~sLa~TVKkL~RDvaKLE~FKk~LmqSLq~D 129 (207)
...+|++|-.+|+.++. +...+.+++.+|- .+.+.+...|.+- ...||.-|+.||||=
T Consensus 5 ~L~eL~qrk~~Lq~eIe----~LerR~~ri~~EmrtsFaG~Sq~lA~R---VqGFkdYLvGsLQDL 63 (283)
T PF11285_consen 5 ALKELEQRKQALQIEIE----QLERRRERIEKEMRTSFAGQSQDLAIR---VQGFKDYLVGSLQDL 63 (283)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHcccccchHHHHHH---HhhhHHHHHHHHHHH
Confidence 35667777777777765 5666666776663 4555565556553 578999999999974
No 307
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=71.37 E-value=1.2e+02 Score=31.58 Aligned_cols=113 Identities=21% Similarity=0.263 Sum_probs=63.5
Q ss_pred CCChHHHHhhCCCCchhhHHHHHHHHHHHHHHhhhhhHHH-HHHHH-HH-------HHHHHHHHHHHHHHHHHHHHH---
Q 028596 12 FDLPEEVLQVLPSDPFEQLDVARKITSIAISTRVSDLESE-HSALR-SQ-------LAEKDSRIAELQSQIESIYSS--- 79 (207)
Q Consensus 12 f~Lp~eilsvLP~DP~EQLdlArkIts~A~atRVs~LEsE-~~~LR-~~-------LaEKd~~i~eLq~rvs~Le~~--- 79 (207)
..++-+.+.-+|+.-..-|++..+---..+..|+-.+..+ ...+| .. ..+.+.++.+|+..+.....-
T Consensus 376 ~~~~le~~k~~~ke~~~~~~~ka~~E~e~l~q~l~~~~k~e~~e~~k~~~d~~~r~~~~~~~~~e~Lqk~~~~~k~ll~e 455 (698)
T KOG0978|consen 376 NELRLEMLKSLLKEQRDKLQVKARAETESLLQRLKALDKEERSEIRKQALDDAERQIRQVEELSEELQKKEKNFKCLLSE 455 (698)
T ss_pred HHHHHHHHhCCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666776666666655544555666666655443 33333 11 122234444454443333200
Q ss_pred ----------HH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Q 028596 80 ----------LS-------DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQ 124 (207)
Q Consensus 80 ----------L~-------~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDvaKLE~FKk~Lmq 124 (207)
+| --+..+.+.|-+|-.|+...-+..|.|..+..+|+.-..+|-.
T Consensus 456 ~~t~gsA~ed~Qeqn~kL~~el~ekdd~nfklm~e~~~~~q~~k~L~~ek~~l~~~i~~l~~ 517 (698)
T KOG0978|consen 456 METIGSAFEDMQEQNQKLLQELREKDDKNFKLMSERIKANQKHKLLREEKSKLEEQILTLKA 517 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 2334677777777778877777777777777777776666544
No 308
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=71.33 E-value=38 Score=36.33 Aligned_cols=16 Identities=19% Similarity=0.042 Sum_probs=7.0
Q ss_pred CCCChHHHHhhCCCCc
Q 028596 11 TFDLPEEVLQVLPSDP 26 (207)
Q Consensus 11 ~f~Lp~eilsvLP~DP 26 (207)
+|..|.=+...+|.+.
T Consensus 128 ~~~~~~F~~p~~p~~~ 143 (1123)
T PRK11448 128 DFKPGPFVPPEDPENL 143 (1123)
T ss_pred CCCCCCCCCCCCCcch
Confidence 4554443333445444
No 309
>KOG0406 consensus Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=71.16 E-value=19 Score=32.19 Aligned_cols=57 Identities=18% Similarity=0.244 Sum_probs=36.3
Q ss_pred HhhCCCCchhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Q 028596 19 LQVLPSDPFEQLDVARKITSIAISTRVSDLESEHSALRSQL---AEKDSRIAELQSQIESIYSSLS 81 (207)
Q Consensus 19 lsvLP~DP~EQLdlArkIts~A~atRVs~LEsE~~~LR~~L---aEKd~~i~eLq~rvs~Le~~L~ 81 (207)
-..||+|||+.= ...=++.++.+.-..+...--.+ .+++..+.++.+.+..||.+|.
T Consensus 87 ~~iLP~DPy~Ra------~arfwa~~id~~~~~~~~~~~~~~~~e~~~~~~~e~~e~l~~lE~el~ 146 (231)
T KOG0406|consen 87 PPILPSDPYERA------QARFWAEYIDKKVFFVGRFVVAAKGGEEQEAAKEELREALKVLEEELG 146 (231)
T ss_pred CCCCCCCHHHHH------HHHHHHHHHHhHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHh
Confidence 358999999852 33345555555444444433333 4667777788888888888876
No 310
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=71.03 E-value=1.3 Score=43.83 Aligned_cols=89 Identities=20% Similarity=0.417 Sum_probs=0.0
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHH----------HH
Q 028596 42 STRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS------DKLGQAQADKERLSKENEALTN----------TV 105 (207)
Q Consensus 42 atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~------~rL~~a~ee~~kL~kE~~sLa~----------TV 105 (207)
+.+...|-++++.||+.+.++.....+++.++..++.++. .-|...-++...|..|.|.|-. +|
T Consensus 238 ~~~~~~l~~ql~~L~~el~~~e~~~~d~~~~~e~le~ei~~L~q~~~eL~~~A~~a~~LrDElD~lR~~a~r~~klE~~v 317 (713)
T PF05622_consen 238 SVELADLRAQLRRLREELERLEEQRDDLKIELEELEKEIDELRQENEELQAEAREARALRDELDELREKADRADKLENEV 317 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 3455667777888888888888877777777777777664 2222223344555555555533 33
Q ss_pred HHHhhhHHHHHHHHHHHHhhcccccC
Q 028596 106 RKLQRDVSKLEVFRKTLVQSLKDDED 131 (207)
Q Consensus 106 KkL~RDvaKLE~FKk~LmqSLq~D~~ 131 (207)
.+..+-+.-++.||+.+ ..|.+++.
T Consensus 318 e~YKkKLed~~~lk~qv-k~Lee~N~ 342 (713)
T PF05622_consen 318 EKYKKKLEDLEDLKRQV-KELEEDNA 342 (713)
T ss_dssp --------------------------
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 33333333344455544 56666554
No 311
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=71.03 E-value=48 Score=35.30 Aligned_cols=36 Identities=14% Similarity=0.310 Sum_probs=15.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 44 RVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSS 79 (207)
Q Consensus 44 RVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~ 79 (207)
+...+|.++.....++.+-...+...+..+...+..
T Consensus 622 ~~~~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 657 (1201)
T PF12128_consen 622 RQEELEKQLKQINKKIEELKREITQAEQELKQAEQD 657 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 344444444444444444444444433333333333
No 312
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=70.95 E-value=32 Score=23.90 Aligned_cols=35 Identities=23% Similarity=0.469 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 028596 82 DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLE 116 (207)
Q Consensus 82 ~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDvaKLE 116 (207)
..+....+....|..+|..|...+..|...+..|+
T Consensus 26 ~~~~~Le~~~~~L~~en~~L~~~~~~L~~~~~~L~ 60 (64)
T PF00170_consen 26 QYIEELEEKVEELESENEELKKELEQLKKEIQSLK 60 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555666666666666666666655554
No 313
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=70.88 E-value=29 Score=32.59 Aligned_cols=35 Identities=17% Similarity=0.284 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccc
Q 028596 95 SKENEALTNTVRKLQRDVSKLEVFRKTLVQSLKDD 129 (207)
Q Consensus 95 ~kE~~sLa~TVKkL~RDvaKLE~FKk~LmqSLq~D 129 (207)
.+....|..+.++|.+.+.+|+.=.+.|...|...
T Consensus 374 ~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 374 KEQLKKLKEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34445555555666666666655555555555444
No 314
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=70.77 E-value=4.4 Score=38.01 Aligned_cols=32 Identities=19% Similarity=0.243 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 028596 86 QAQADKERLSKENEALTNTVRKLQRDVSKLEV 117 (207)
Q Consensus 86 ~a~ee~~kL~kE~~sLa~TVKkL~RDvaKLE~ 117 (207)
...-+..+|..--..++-+|..|.+-|..||.
T Consensus 123 ~lsTdvsNLksdVSt~aL~ItdLe~RV~~LEs 154 (326)
T PF04582_consen 123 ALSTDVSNLKSDVSTQALNITDLESRVKALES 154 (326)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhhhhhhhhhhhhhhcchHhhHHHHHHHHhc
Confidence 34444456666677777777777777777775
No 315
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=70.46 E-value=50 Score=32.82 Aligned_cols=59 Identities=20% Similarity=0.335 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH-----------HHHHHHHHHHhhhHHHHHHHHHH
Q 028596 63 DSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKEN-----------EALTNTVRKLQRDVSKLEVFRKT 121 (207)
Q Consensus 63 d~~i~eLq~rvs~Le~~L~---~rL~~a~ee~~kL~kE~-----------~sLa~TVKkL~RDvaKLE~FKk~ 121 (207)
...+.++++|+..++..=. ..+..+.++..+|.+|- +.|.+-.+.+..+++.|+.-.+.
T Consensus 190 ~~~~~~yk~~v~~i~~~~ik~p~~i~~~~~e~d~lk~e~~~~~~~i~~~~~~l~~~~~~~~~~~~~lk~ap~~ 262 (555)
T TIGR03545 190 KQDLEEYKKRLEAIKKKDIKNPLELQKIKEEFDKLKKEGKADKQKIKSAKNDLQNDKKQLKADLAELKKAPQN 262 (555)
T ss_pred chhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhccHh
Confidence 3445566666666655311 33334444444444444 44444444555555555554443
No 316
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=70.16 E-value=89 Score=29.44 Aligned_cols=56 Identities=21% Similarity=0.213 Sum_probs=29.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHH
Q 028596 44 RVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS----------DKLGQAQADKERLSKENE 99 (207)
Q Consensus 44 RVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~----------~rL~~a~ee~~kL~kE~~ 99 (207)
-++.||.+...++.+-..-..-|.+|+.+-..||++-. .||.+|.++|+=|..|.+
T Consensus 92 q~s~Leddlsqt~aikeql~kyiReLEQaNDdLErakRati~sleDfeqrLnqAIErnAfLESELd 157 (333)
T KOG1853|consen 92 QESQLEDDLSQTHAIKEQLRKYIRELEQANDDLERAKRATIYSLEDFEQRLNQAIERNAFLESELD 157 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34445555444444433333444455444444444322 678888888877766543
No 317
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=69.82 E-value=79 Score=27.95 Aligned_cols=41 Identities=17% Similarity=0.334 Sum_probs=20.9
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (207)
Q Consensus 41 ~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~ 81 (207)
...|...||..+..+++.+.+=......|+..+..|+.-+.
T Consensus 90 al~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~Ki~ 130 (225)
T COG1842 90 ALEEKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQKIA 130 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555555555555555555555555555544444443
No 318
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=69.82 E-value=28 Score=31.75 Aligned_cols=80 Identities=20% Similarity=0.365 Sum_probs=53.5
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 028596 42 STRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKT 121 (207)
Q Consensus 42 atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDvaKLE~FKk~ 121 (207)
...|.=+..++..+...+.+..+.+.+.+.++..++..|. ....+..+...|+..|...++...+-+.+-+ .
T Consensus 213 ~~~V~P~~~~l~~a~~~l~~~~~~L~~~~~~l~~l~~~l~----~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~----~ 284 (344)
T PF12777_consen 213 NKEVEPKRQKLEEAEAELEEAEEQLAEKQAELAELEEKLA----ALQKEYEEAQKEKQELEEEIEETERKLERAE----K 284 (344)
T ss_dssp CCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhhhccHH----H
Confidence 3445557777777777777777777777777777666665 6677777777888888888777666444332 2
Q ss_pred HHhhcccc
Q 028596 122 LVQSLKDD 129 (207)
Q Consensus 122 LmqSLq~D 129 (207)
|+.+|.++
T Consensus 285 Li~~L~~E 292 (344)
T PF12777_consen 285 LISGLSGE 292 (344)
T ss_dssp HHHCCHHH
T ss_pred HHhhhcch
Confidence 55666554
No 319
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=69.68 E-value=48 Score=25.32 Aligned_cols=33 Identities=15% Similarity=0.338 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 028596 90 DKERLSKENEALTNTVRKLQRDVSKLEVFRKTL 122 (207)
Q Consensus 90 e~~kL~kE~~sLa~TVKkL~RDvaKLE~FKk~L 122 (207)
+..+|...++.|+..+-+......+||.--+-+
T Consensus 40 ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Ev 72 (89)
T PF13747_consen 40 EIQRLDADRSRLAQELDQAEARANRLEEANREV 72 (89)
T ss_pred HHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444443333
No 320
>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=69.55 E-value=71 Score=30.77 Aligned_cols=85 Identities=19% Similarity=0.271 Sum_probs=56.8
Q ss_pred HhhCCCCchhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 19 LQVLPSDPFEQLDVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKEN 98 (207)
Q Consensus 19 lsvLP~DP~EQLdlArkIts~A~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~ 98 (207)
..+-|.+|-+-+- =|.+=.++-..+||..+.|+-.....+|+-+..-+. +.....++|..++
T Consensus 194 ~~~yp~n~~~~~~-----------irasvisa~~eklR~r~eeeme~~~aeq~slkRt~E-------eL~~G~~kL~~~~ 255 (365)
T KOG2391|consen 194 AEPYPPNASGKLV-----------IRASVISAVREKLRRRREEEMERLQAEQESLKRTEE-------ELNIGKQKLVAMK 255 (365)
T ss_pred CCcCCCCcccccc-----------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH-------HHHhhHHHHHHHH
Confidence 3456666666554 233334555566777666655554444444443333 4456778999999
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHH
Q 028596 99 EALTNTVRKLQRDVSKLEVFRKT 121 (207)
Q Consensus 99 ~sLa~TVKkL~RDvaKLE~FKk~ 121 (207)
..|..++-+|+.+.+-|.+-++-
T Consensus 256 etLEqq~~~L~~niDIL~~k~~e 278 (365)
T KOG2391|consen 256 ETLEQQLQSLQKNIDILKSKVRE 278 (365)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHH
Confidence 99999999999999999888776
No 321
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=69.54 E-value=1.3e+02 Score=31.03 Aligned_cols=37 Identities=19% Similarity=0.315 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHH
Q 028596 30 LDVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIA 67 (207)
Q Consensus 30 LdlArkIts~A~atRVs~LEsE~~~LR~~LaEKd~~i~ 67 (207)
++-|++|..- ...++..|=.++.+.|..+.++.+.+.
T Consensus 499 i~~A~~~~~~-~~~~~~~li~~L~~~~~~~e~~~~~~~ 535 (771)
T TIGR01069 499 IEQAKTFYGE-FKEEINVLIEKLSALEKELEQKNEHLE 535 (771)
T ss_pred HHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555432 333444444444444444444443333
No 322
>PF11740 KfrA_N: Plasmid replication region DNA-binding N-term; InterPro: IPR021104 The KfrA family of protiens are encoded on plasmids, generally in or near gene clusters invloved in stable inheritance functions. These proteins are thought to form an all-helical structure, consisting of an N-terminal helix-turn-helix DNA binding domain and an extended coiled-coil tail. The best-characterised KfrA protein, encoded on the broad host-range Plasmid RK2, is a site-specific DNA-binding protein whose operator overlaps its own promoter. The DNA-binding domain is essential for function, while the coiled-coil domain is probably responsible for formation of multimers, and may provide an example of a bridge to host structures required for plasmid partitioning []. This entry represents the N-terminal DNA-binding domain.
Probab=69.19 E-value=21 Score=26.96 Aligned_cols=50 Identities=20% Similarity=0.320 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 31 DVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSL 80 (207)
Q Consensus 31 dlArkIts~A~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L 80 (207)
++...+...|...-...|+.+...+...+.+-+....++..++..++.++
T Consensus 69 ~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~ 118 (120)
T PF11740_consen 69 ELMARLWEAAQEEAEEELEAARAELEQERAAAEAELAEAEAQAEELEAEL 118 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566666677777777777777777777777777777777777666655
No 323
>PRK11519 tyrosine kinase; Provisional
Probab=69.16 E-value=70 Score=32.06 Aligned_cols=27 Identities=19% Similarity=0.247 Sum_probs=18.1
Q ss_pred HHHHHhhhHHHHHHHHHHHHhhccccc
Q 028596 104 TVRKLQRDVSKLEVFRKTLVQSLKDDE 130 (207)
Q Consensus 104 TVKkL~RDvaKLE~FKk~LmqSLq~D~ 130 (207)
....|.||+.--+..=..|++.+++-.
T Consensus 371 ~~~~L~Re~~~~~~lY~~lL~r~~e~~ 397 (719)
T PRK11519 371 EIVRLTRDVESGQQVYMQLLNKQQELK 397 (719)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445667777777777777777766643
No 324
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=69.13 E-value=81 Score=27.75 Aligned_cols=66 Identities=18% Similarity=0.291 Sum_probs=35.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 028596 48 LESEHSALRSQLAEKDSRIAELQSQIESIYSSLS-------DKLGQAQADKERLSKENEALTNTVRKLQRDVS 113 (207)
Q Consensus 48 LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~-------~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDva 113 (207)
-|.|+..|+.+..++...+.++..=+..+|..++ -.-.....+..++..|++.+..-+..+.+.++
T Consensus 21 ~E~e~~~l~~k~~e~~~~~~~m~~i~~e~Ek~i~~~i~e~~~~~~~~~~~i~~~~~erdq~~~dL~s~E~sfs 93 (207)
T PF05010_consen 21 KEEEEQELKKKYEELHKENQEMRKIMEEYEKTIAQMIEEKQKQKELSEAEIQKLLKERDQAYADLNSLEKSFS 93 (207)
T ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHHHHHHHhhHHHHHHHHHHHHhhHH
Confidence 3455566666666655555555544444444444 22233345556677777766666665555544
No 325
>PLN03188 kinesin-12 family protein; Provisional
Probab=69.06 E-value=74 Score=35.20 Aligned_cols=54 Identities=17% Similarity=0.262 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH-HHHHHHHHHHHh
Q 028596 67 AELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDV-SKLEVFRKTLVQ 124 (207)
Q Consensus 67 ~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDv-aKLE~FKk~Lmq 124 (207)
++|==|+-..|.++. .|.++-+....|+..|-..+-||.|.- -.+.++|..|-.
T Consensus 1200 gellvrl~eaeea~~----~a~~r~~~~eqe~~~~~k~~~klkrkh~~e~~t~~q~~ae 1254 (1320)
T PLN03188 1200 GELLVRLKEAEEALT----VAQKRAMDAEQEAAEAYKQIDKLKRKHENEISTLNQLVAE 1254 (1320)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344444444444443 344444555556666656666666655 556666665543
No 326
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=68.93 E-value=37 Score=26.87 Aligned_cols=46 Identities=20% Similarity=0.336 Sum_probs=32.6
Q ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 028596 72 QIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEV 117 (207)
Q Consensus 72 rvs~Le~~L~---~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDvaKLE~ 117 (207)
++..+|.++. +.+....+....|.+||..|.---..|..-+.+++.
T Consensus 9 ~l~~le~~l~~l~~~~~~LK~~~~~l~EEN~~L~~EN~~Lr~~l~~~~~ 57 (107)
T PF06156_consen 9 RLDQLEQQLGQLLEELEELKKQLQELLEENARLRIENEHLRERLEELEQ 57 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3344444443 444477788889999999998888888887777776
No 327
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=68.92 E-value=56 Score=25.87 Aligned_cols=42 Identities=29% Similarity=0.314 Sum_probs=33.6
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (207)
Q Consensus 40 A~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~ 81 (207)
.+|.+.-.++.++..+|.++.++-..+..|+.++..++..+.
T Consensus 45 ~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~ 86 (150)
T PF07200_consen 45 ELAEQNLSLEPELEELRSQLQELYEELKELESEYQEKEQQQD 86 (150)
T ss_dssp HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 778888889999999999999999999999998888887776
No 328
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=68.84 E-value=1.3e+02 Score=29.85 Aligned_cols=14 Identities=14% Similarity=0.292 Sum_probs=6.3
Q ss_pred HHHHHHHhhhHHHH
Q 028596 102 TNTVRKLQRDVSKL 115 (207)
Q Consensus 102 a~TVKkL~RDvaKL 115 (207)
-.++++..+.|..+
T Consensus 146 ~e~l~~f~~~v~~~ 159 (475)
T PRK10361 146 REQLDGFRRQVQDS 159 (475)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444443
No 329
>PHA03332 membrane glycoprotein; Provisional
Probab=68.70 E-value=88 Score=34.37 Aligned_cols=55 Identities=13% Similarity=0.224 Sum_probs=36.7
Q ss_pred HhhhhhHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 43 TRVSDLESEHSALRSQLA----EKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKE 97 (207)
Q Consensus 43 tRVs~LEsE~~~LR~~La----EKd~~i~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE 97 (207)
.||+.|..-+..|=..++ +-++.|.+-..|++.||.++-.|+.......++|+..
T Consensus 905 aAV~~lsDai~klGnti~kisatl~~nI~avNgRIs~Led~VN~r~~~v~~~intLA~q 963 (1328)
T PHA03332 905 ARVDKTSDVITKLGDTIAKISATLDNNIRAVNGRVSDLEDQVNLRFLAVATNFNTLATQ 963 (1328)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHhhHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666665555555443 5677788888888888888876666666666666555
No 330
>PF05600 DUF773: Protein of unknown function (DUF773); InterPro: IPR008491 This family contains several eukaryotic sequences which are thought to be CDK5 activator-binding proteins, however, the function of this family is unknown.
Probab=68.51 E-value=39 Score=33.07 Aligned_cols=59 Identities=24% Similarity=0.327 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 028596 52 HSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSK 114 (207)
Q Consensus 52 ~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDvaK 114 (207)
+.+|-..|..|..++.-+..++..++. |...+.+++.+|.-.-+.|....|.|...+.+
T Consensus 434 vdrl~~~L~qk~~~~~k~~~~~~~l~~----kr~e~~~e~~~l~pkL~~l~~~Tr~Lq~~iE~ 492 (507)
T PF05600_consen 434 VDRLVESLQQKLKQEEKLRRKREDLEE----KRQEAQEEQQELEPKLDALVERTRELQKQIEA 492 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 566666666666666666655555544 44488899999999999999999998876654
No 331
>PF14915 CCDC144C: CCDC144C protein coiled-coil region
Probab=68.38 E-value=1.1e+02 Score=28.91 Aligned_cols=78 Identities=23% Similarity=0.354 Sum_probs=43.7
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH-HHHHHHHHHHHHHHHhhhHHH
Q 028596 39 IAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKER-LSKENEALTNTVRKLQRDVSK 114 (207)
Q Consensus 39 ~A~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~---~rL~~a~ee~~k-L~kE~~sLa~TVKkL~RDvaK 114 (207)
.++--|++.|++|---||++|.+--....--++-|..++..++ .+|..-.++..- |.+.|..|.+--.-|.-.+-+
T Consensus 217 es~eERL~QlqsEN~LLrQQLddA~~K~~~kek~ViniQ~~f~d~~~~L~ae~ekq~lllEErNKeL~ne~n~LkEr~~q 296 (305)
T PF14915_consen 217 ESLEERLSQLQSENMLLRQQLDDAHNKADNKEKTVINIQDQFQDIVKKLQAESEKQVLLLEERNKELINECNHLKERLYQ 296 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 4788999999999999999998644443333344555555554 222222222222 333333355544444444444
Q ss_pred HH
Q 028596 115 LE 116 (207)
Q Consensus 115 LE 116 (207)
.|
T Consensus 297 yE 298 (305)
T PF14915_consen 297 YE 298 (305)
T ss_pred HH
Confidence 43
No 332
>PF13094 CENP-Q: CENP-Q, a CENPA-CAD centromere complex subunit
Probab=68.19 E-value=63 Score=26.14 Aligned_cols=70 Identities=24% Similarity=0.225 Sum_probs=40.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcc
Q 028596 48 LESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLK 127 (207)
Q Consensus 48 LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDvaKLE~FKk~LmqSLq 127 (207)
|-.....|-++|+-=.+.|..|++.+...+..|. +-.+.-..|..+++.+.+.+.+++.=.+.+++-..
T Consensus 25 ll~~~~~LE~qL~~~~~~l~lLq~e~~~~e~~le-----------~d~~~L~~Le~~~~~~~~e~~~~~~~~~~vL~~~~ 93 (160)
T PF13094_consen 25 LLDRKRALERQLAANLHQLELLQEEIEKEEAALE-----------RDYEYLQELEKNAKALEREREEEEKKAHPVLQLDD 93 (160)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHhccchhhcccc
Confidence 3333444555555555566677777776666665 22333445666777777777666654466666543
Q ss_pred c
Q 028596 128 D 128 (207)
Q Consensus 128 ~ 128 (207)
.
T Consensus 94 ~ 94 (160)
T PF13094_consen 94 S 94 (160)
T ss_pred c
Confidence 3
No 333
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=68.08 E-value=1.1e+02 Score=30.82 Aligned_cols=29 Identities=17% Similarity=0.310 Sum_probs=20.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 45 VSDLESEHSALRSQLAEKDSRIAELQSQI 73 (207)
Q Consensus 45 Vs~LEsE~~~LR~~LaEKd~~i~eLq~rv 73 (207)
+.=|+.++..|+++|.+-++.+.+.+.+.
T Consensus 269 ~~fL~~qL~~l~~~L~~aE~~l~~fr~~~ 297 (726)
T PRK09841 269 LEFLQRQLPEVRSELDQAEEKLNVYRQQR 297 (726)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34466777777777777777777776654
No 334
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=67.99 E-value=47 Score=29.49 Aligned_cols=20 Identities=30% Similarity=0.353 Sum_probs=8.8
Q ss_pred HHHHhhhhhHHHHHHHHHHH
Q 028596 40 AISTRVSDLESEHSALRSQL 59 (207)
Q Consensus 40 A~atRVs~LEsE~~~LR~~L 59 (207)
+++.-.+.+|+||..|-..|
T Consensus 97 ~l~~t~s~veaEik~L~s~L 116 (201)
T KOG4603|consen 97 SLQQTCSYVEAEIKELSSAL 116 (201)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 33344444444444444443
No 335
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=67.80 E-value=25 Score=35.11 Aligned_cols=23 Identities=35% Similarity=0.466 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 028596 87 AQADKERLSKENEALTNTVRKLQ 109 (207)
Q Consensus 87 a~ee~~kL~kE~~sLa~TVKkL~ 109 (207)
.......|..||..|...++.|.
T Consensus 564 k~~~l~~L~~En~~L~~~l~~le 586 (722)
T PF05557_consen 564 KKSTLEALQAENEDLLARLRSLE 586 (722)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Confidence 34566677777777777665554
No 336
>PRK00578 prfB peptide chain release factor 2; Validated
Probab=67.74 E-value=1.1e+02 Score=28.98 Aligned_cols=85 Identities=19% Similarity=0.308 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH--------
Q 028596 32 VARKITSIAISTRVSDLESEHSALRSQLAE-----KDSRIAELQSQIESIYSSLS--DKLGQAQADKERLSK-------- 96 (207)
Q Consensus 32 lArkIts~A~atRVs~LEsE~~~LR~~LaE-----Kd~~i~eLq~rvs~Le~~L~--~rL~~a~ee~~kL~k-------- 96 (207)
|+++|....=.-.+..++.+...|...+.+ ....+..|-++++.|...+. .++....++...+.+
T Consensus 12 ~~~~~~~~~~~~~l~~~~~~~~~l~~~l~~p~~~~d~~~~~~l~ke~~~L~~iv~~~~~l~~~~~e~~~~~ell~~e~D~ 91 (367)
T PRK00578 12 LDEKLENIRGVLDVDALKERLEELEAEAEDPDFWNDQERAQKVTKELSSLKAKLDTLEELRQRLDDLEELLELAEEEDDE 91 (367)
T ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCH
Confidence 555665554445556666666666666643 22334455555665555555 444444444332221
Q ss_pred -HHHHHHHHHHHHhhhHHHHH
Q 028596 97 -ENEALTNTVRKLQRDVSKLE 116 (207)
Q Consensus 97 -E~~sLa~TVKkL~RDvaKLE 116 (207)
-+..+...++.|...+.+||
T Consensus 92 el~~~a~~e~~~l~~~l~~le 112 (367)
T PRK00578 92 ETLAEAEAELKALEKKLAALE 112 (367)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 12345567788888888888
No 337
>PF07246 Phlebovirus_NSM: Phlebovirus nonstructural protein NS-M; InterPro: IPR009879 This entry consists of several Phlebovirus nonstructural NS-M proteins, which represent the N-terminal region of the M polyprotein precursor. The function of this family is unknown.
Probab=67.67 E-value=48 Score=30.54 Aligned_cols=26 Identities=31% Similarity=0.391 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 56 RSQLAEKDSRIAELQSQIESIYSSLS 81 (207)
Q Consensus 56 R~~LaEKd~~i~eLq~rvs~Le~~L~ 81 (207)
|.+.-|.+..++-|+.|++.++..+.
T Consensus 160 ~~~~~e~d~rnq~l~~~i~~l~~~l~ 185 (264)
T PF07246_consen 160 KTQERENDRRNQILSHEISNLTNELS 185 (264)
T ss_pred HhhchhhhhHHHHHHHHHHHhhhhHH
Confidence 44444556666666666666666665
No 338
>KOG2417 consensus Predicted G-protein coupled receptor [Signal transduction mechanisms]
Probab=67.38 E-value=20 Score=35.04 Aligned_cols=26 Identities=27% Similarity=0.491 Sum_probs=17.9
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHh
Q 028596 99 EALTNTVRKLQRDVSKLEVFRKTLVQ 124 (207)
Q Consensus 99 ~sLa~TVKkL~RDvaKLE~FKk~Lmq 124 (207)
++++..++.|+.+|.-||.+-|+|.-
T Consensus 245 ~~~~~~i~~lq~EV~~LEeLsrqLFL 270 (462)
T KOG2417|consen 245 NTLSSDIKLLQQEVEPLEELSRQLFL 270 (462)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777777777777653
No 339
>PRK00591 prfA peptide chain release factor 1; Validated
Probab=67.38 E-value=94 Score=29.49 Aligned_cols=88 Identities=19% Similarity=0.304 Sum_probs=43.9
Q ss_pred HHhhhhhHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHH---HHHH------HHHHHHHHH
Q 028596 42 STRVSDLESEHSALRSQLAEK-----DSRIAELQSQIESIYSSLS--DKLGQAQADKE---RLSK------ENEALTNTV 105 (207)
Q Consensus 42 atRVs~LEsE~~~LR~~LaEK-----d~~i~eLq~rvs~Le~~L~--~rL~~a~ee~~---kL~k------E~~sLa~TV 105 (207)
..++..++.++..|...+.+- .....++-++++.|+..+. .++....++.. .|.+ -..-+...+
T Consensus 5 ~~~~e~~~~~~~~le~~~~~~~~w~d~~~~~~~~~e~~~L~~~v~~~~~~~~~~~~~~~~~~l~~~e~D~~~~~~~~~e~ 84 (359)
T PRK00591 5 LDKLEALEERYEELEALLSDPEVISDQKRFRKLSKEYAELEPIVEAYREYKQAQEDLEEAKEMLEEESDPEMREMAKEEL 84 (359)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 445566666666666655432 1233333334444444333 33333333322 2221 123344567
Q ss_pred HHHhhhHHHHHH-HHHHHHhhcccc
Q 028596 106 RKLQRDVSKLEV-FRKTLVQSLKDD 129 (207)
Q Consensus 106 KkL~RDvaKLE~-FKk~LmqSLq~D 129 (207)
.+|..+|.+|+. ++..||-+-..|
T Consensus 85 ~~l~~~l~~~e~~l~~~ll~~~~~D 109 (359)
T PRK00591 85 KELEERLEELEEELKILLLPKDPND 109 (359)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 888888888886 666566544433
No 340
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=67.25 E-value=56 Score=25.26 Aligned_cols=23 Identities=9% Similarity=0.329 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 028596 86 QAQADKERLSKENEALTNTVRKL 108 (207)
Q Consensus 86 ~a~ee~~kL~kE~~sLa~TVKkL 108 (207)
...++|.+|..|..+-...++.|
T Consensus 50 ~L~~en~qLk~E~~~WqerLr~L 72 (79)
T PRK15422 50 ELERENNHLKEQQNGWQERLQAL 72 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 35567777777777777666665
No 341
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=67.13 E-value=25 Score=34.69 Aligned_cols=48 Identities=31% Similarity=0.412 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 58 QLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTV 105 (207)
Q Consensus 58 ~LaEKd~~i~eLq~rvs~Le~~L~---~rL~~a~ee~~kL~kE~~sLa~TV 105 (207)
+|++-.....+|++++..|..+++ .++....++.++|..|+..|..++
T Consensus 70 ALteqQ~kasELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 70 ATTEMQVTAAQMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 344444455555555555544443 223333333334444444444444
No 342
>KOG0614 consensus cGMP-dependent protein kinase [Signal transduction mechanisms]
Probab=67.13 E-value=21 Score=36.49 Aligned_cols=45 Identities=18% Similarity=0.298 Sum_probs=33.5
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 37 TSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (207)
Q Consensus 37 ts~A~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~ 81 (207)
|+.++-..|..||.++.+.++.|.+++.++.+|.++++.++.+++
T Consensus 18 t~~~~~~~v~~l~~~v~~kd~elr~rqt~~~~l~~~~~~~~~~i~ 62 (732)
T KOG0614|consen 18 TARELQNLVPQLEEAVQRKDAELRQRQTILEELIKEISKLEGEIA 62 (732)
T ss_pred chHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 455666777888888888888888888887777777776666654
No 343
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=67.01 E-value=47 Score=24.22 Aligned_cols=10 Identities=30% Similarity=0.415 Sum_probs=3.7
Q ss_pred HHHhhhHHHH
Q 028596 106 RKLQRDVSKL 115 (207)
Q Consensus 106 KkL~RDvaKL 115 (207)
+.|+.++++|
T Consensus 82 ~~l~~~l~~l 91 (127)
T smart00502 82 ESLTQKQEKL 91 (127)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 344
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=66.76 E-value=63 Score=25.63 Aligned_cols=16 Identities=38% Similarity=0.447 Sum_probs=6.6
Q ss_pred hhhHHHHHHHHHHHHH
Q 028596 46 SDLESEHSALRSQLAE 61 (207)
Q Consensus 46 s~LEsE~~~LR~~LaE 61 (207)
..|++|+.+++....+
T Consensus 6 ~~l~~e~~~~~~~~~~ 21 (132)
T PF07926_consen 6 SSLQSELQRLKEQEED 21 (132)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444433
No 345
>PF05761 5_nucleotid: 5' nucleotidase family; InterPro: IPR008380 This family includes a 5'-nucleotidase, 3.1.3.5 from EC, specific for purines (IMP and GMP) []. These enzymes are members of the Haloacid Dehalogenase (HAD) superfamily. HAD members are recognised by three short motifs {hhhhDxDx(T/V)}, {hhhh(T/S)}, and either {hhhh(D/E)(D/E)x(3-4)(G/N)} or {hhhh(G/N)(D/E)x(3-4)(D/E)} (where "h" stands for a hydrophobic residue). Crystal structures of many HAD enzymes has verified PSI-PRED predictions of secondary structural elements which show each of the "hhhh" sequences of the motifs as part of beta sheets. This subfamily of enzymes is part of "Subfamily I" of the HAD superfamily by virtue of a "cap" domain in between motifs 1 and 2. This subfamily's cap domain has a different predicted secondary structure than all other known HAD enzymes and thus has been designated "subfamily IG", the domain appears to consist of a mixed alpha/beta fold.; PDB: 2BDE_A 2XCW_A 2XCX_A 2XCV_A 2XJB_A 2JCM_A 2XJE_A 2J2C_A 2XJF_A 2XJD_A ....
Probab=66.74 E-value=27 Score=33.76 Aligned_cols=58 Identities=22% Similarity=0.322 Sum_probs=32.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Q 028596 45 VSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS--DKLGQAQADKERLSKENEALTN 103 (207)
Q Consensus 45 Vs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~--~rL~~a~ee~~kL~kE~~sLa~ 103 (207)
|-+||.|+.-+...-.-..+ +..|+.....++..+. .+..........+.+|++.|..
T Consensus 324 i~ELe~Ei~~~~~~~~~~~~-l~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (448)
T PF05761_consen 324 IPELEQEIEIWNSKKYRFEE-LQELEELLEELQDHLDQLRSSSELRPDISELRKERRELRR 383 (448)
T ss_dssp -TTHHHHHHHHHHTHHHHHH-HHHHHHHCHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ehhhhhhhhhhhhcchhhhH-HHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHH
Confidence 56899998888766543333 7777777777766664 2333333333444444444333
No 346
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=66.67 E-value=43 Score=23.73 Aligned_cols=52 Identities=19% Similarity=0.362 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhhHHHHH
Q 028596 61 EKDSRIAELQSQIESIYSSLSDKLGQAQADKERLS-KENEALTNTVRKLQRDVSKLE 116 (207)
Q Consensus 61 EKd~~i~eLq~rvs~Le~~L~~rL~~a~ee~~kL~-kE~~sLa~TVKkL~RDvaKLE 116 (207)
+|...|..++..+..++.-|. +-.-+...+- .++..+...|+....++.+|+
T Consensus 22 ~r~~~i~~~e~~l~ea~~~l~----qMe~E~~~~p~s~r~~~~~kl~~yr~~l~~lk 74 (79)
T PF05008_consen 22 QRKSLIREIERDLDEAEELLK----QMELEVRSLPPSERNQYKSKLRSYRSELKKLK 74 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----HHHHHHCTS-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666666666666665554 3333333332 677788888888887777764
No 347
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=66.64 E-value=18 Score=27.68 Aligned_cols=35 Identities=17% Similarity=0.302 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 028596 84 LGQAQADKERLSKENEALTNTVRKLQRDVSKLEVF 118 (207)
Q Consensus 84 L~~a~ee~~kL~kE~~sLa~TVKkL~RDvaKLE~F 118 (207)
|.....+..|--+....+...+|.|.+..--+|+.
T Consensus 3 leKi~~eieK~k~Kiae~Q~rlK~Le~qk~E~EN~ 37 (83)
T PF14193_consen 3 LEKIRAEIEKTKEKIAELQARLKELEAQKTEAENL 37 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555566666666666666666666666654
No 348
>PF15272 BBP1_C: Spindle pole body component BBP1, C-terminal
Probab=66.63 E-value=68 Score=28.30 Aligned_cols=18 Identities=39% Similarity=0.471 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 028596 60 AEKDSRIAELQSQIESIY 77 (207)
Q Consensus 60 aEKd~~i~eLq~rvs~Le 77 (207)
.+|++.|..+++++..++
T Consensus 103 ~~kd~~i~~~~~~l~~~~ 120 (196)
T PF15272_consen 103 IEKDREIRTLQDELLSLE 120 (196)
T ss_pred HHhHHHHHHHHHHHHHHH
Confidence 456666666665554333
No 349
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=66.39 E-value=79 Score=32.45 Aligned_cols=85 Identities=25% Similarity=0.321 Sum_probs=0.0
Q ss_pred HHhhhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 028596 42 STRVSDLES-EHSALRSQLAEKDSRIAELQSQIESIYSSLS--DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVF 118 (207)
Q Consensus 42 atRVs~LEs-E~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~--~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDvaKLE~F 118 (207)
...+..+.. ++..|+.++.. +.++..|...+..++..+. .+.. ...........+.+...++++...+++++..
T Consensus 472 ~~~~~~~~~~el~~l~~~i~~-~~~~~~l~~e~~~l~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~e~l~~~~e~~~~~ 548 (908)
T COG0419 472 EKELLELYELELEELEEELSR-EKEEAELREEIEELEKELRELEEEL--IELLELEEALKEELEEKLEKLENLLEELEEL 548 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhHHHHhHHHHHHHHHHHHHHHHHHHhH
Q ss_pred HHHH-Hhhcccc
Q 028596 119 RKTL-VQSLKDD 129 (207)
Q Consensus 119 Kk~L-mqSLq~D 129 (207)
+..+ .+.++.+
T Consensus 549 ~~~~~~~~l~~e 560 (908)
T COG0419 549 KEKLQLQQLKEE 560 (908)
T ss_pred HHHHHHHHHHHH
No 350
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=66.03 E-value=47 Score=36.04 Aligned_cols=33 Identities=9% Similarity=0.225 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 028596 82 DKLGQAQADKERLSKENEALTNTVRKLQRDVSK 114 (207)
Q Consensus 82 ~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDvaK 114 (207)
++.....++-.+|.+-.-.|-+.+..|.+.++.
T Consensus 472 ~~~e~l~q~~~~l~~~~~~lk~~~~~l~a~~~~ 504 (1174)
T KOG0933|consen 472 GQEEALKQRRAKLHEDIGRLKDELDRLLARLAN 504 (1174)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 333333444444444444444444444333333
No 351
>PF04859 DUF641: Plant protein of unknown function (DUF641); InterPro: IPR006943 This conserved region is found in a number of plant proteins of unknown function.
Probab=65.97 E-value=23 Score=29.26 Aligned_cols=23 Identities=17% Similarity=0.232 Sum_probs=8.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Q 028596 48 LESEHSALRSQLAEKDSRIAELQ 70 (207)
Q Consensus 48 LEsE~~~LR~~LaEKd~~i~eLq 70 (207)
|++++..+|..+...+..+..|+
T Consensus 78 l~a~~~e~qsli~~yE~~~~kLe 100 (131)
T PF04859_consen 78 LAAEIQEQQSLIKTYEIVVKKLE 100 (131)
T ss_pred cccchHHHHHHHHHHHHHHHHHH
Confidence 33344444433333333333333
No 352
>PF14282 FlxA: FlxA-like protein
Probab=65.85 E-value=38 Score=26.28 Aligned_cols=42 Identities=19% Similarity=0.392 Sum_probs=32.1
Q ss_pred HHHHhhhhhHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Q 028596 40 AISTRVSDLESEHSALRSQ----LAEKDSRIAELQSQIESIYSSLS 81 (207)
Q Consensus 40 A~atRVs~LEsE~~~LR~~----LaEKd~~i~eLq~rvs~Le~~L~ 81 (207)
.|..++..|..++..|... -.+|...+..|+.++..|+.+|.
T Consensus 23 ~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~ 68 (106)
T PF14282_consen 23 QLQKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIA 68 (106)
T ss_pred HHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667777777777777772 24778888889989888888887
No 353
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=65.69 E-value=51 Score=24.16 Aligned_cols=64 Identities=22% Similarity=0.311 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 028596 52 HSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSKL 115 (207)
Q Consensus 52 ~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~---~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDvaKL 115 (207)
..+|+.-+.+=.+.+..+++++..+-.+.. .......++.+.-.+.-+.+...|+.+..-|..|
T Consensus 21 l~~l~~~l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~~k~~~v~~~~~~v~~~g~~v~~l 87 (90)
T PF06103_consen 21 LKKLKKTLDEVNKTIDTLQEQVDPITKEINDLLHNTNELLEDVNEKLEKVDPVFEAVADLGESVSEL 87 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 344555555555666666666655555554 3333334444444444445555555555544443
No 354
>PF13805 Pil1: Eisosome component PIL1; PDB: 3PLT_B.
Probab=65.54 E-value=1.1e+02 Score=28.16 Aligned_cols=54 Identities=24% Similarity=0.227 Sum_probs=32.7
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Q 028596 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERL 94 (207)
Q Consensus 41 ~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~---~rL~~a~ee~~kL 94 (207)
|..|++-|=.|++.+-...+.+-.....-=+.|-..|.+|+ ++-....+++++|
T Consensus 101 IsDklgvLl~e~ge~e~~~a~~~d~yR~~LK~IR~~E~sl~p~R~~r~~l~d~I~kL 157 (271)
T PF13805_consen 101 ISDKLGVLLYEIGELEDQYADRLDQYRIHLKSIRNREESLQPSRDRRRKLQDEIAKL 157 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHHHHHHHHHH
Confidence 45677777777777777777766666555556666666666 3333334444444
No 355
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=65.53 E-value=83 Score=34.08 Aligned_cols=77 Identities=17% Similarity=0.270 Sum_probs=48.7
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 028596 39 IAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVF 118 (207)
Q Consensus 39 ~A~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDvaKLE~F 118 (207)
.-+..++...|.++..||.++..+...+.+|++++......+. .......-+-+|+..+...+++.++--+++|+.
T Consensus 625 ~~l~~~~~~~ee~~~~~~~~~~~~~~~~r~lee~~~k~~k~le----~~~~~~~~~~~er~~~~~~~~~~~~r~~~ie~~ 700 (1072)
T KOG0979|consen 625 PVLEELDNRIEEEIQKLKAEIDIRSSTLRELEEKKQKERKELE----EEQKKLKLLKRERTKLNSELKSYQQRKERIENL 700 (1072)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3445556667888888888888888888888888777766665 333333444445555555555555555555554
Q ss_pred H
Q 028596 119 R 119 (207)
Q Consensus 119 K 119 (207)
+
T Consensus 701 ~ 701 (1072)
T KOG0979|consen 701 V 701 (1072)
T ss_pred H
Confidence 3
No 356
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=65.53 E-value=1e+02 Score=32.66 Aligned_cols=34 Identities=18% Similarity=0.187 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhhccccc
Q 028596 97 ENEALTNTVRKLQRDVSKLEVFRKTLVQSLKDDE 130 (207)
Q Consensus 97 E~~sLa~TVKkL~RDvaKLE~FKk~LmqSLq~D~ 130 (207)
-...+.++..+-|+=...|+.|||+|-+...+.+
T Consensus 207 hlkermaAle~kn~L~~e~~s~kk~l~~~~~~k~ 240 (916)
T KOG0249|consen 207 HLKERMAALEDKNRLEQELESVKKQLEEMRHDKD 240 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455566666666777788888777544443
No 357
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=65.23 E-value=88 Score=32.41 Aligned_cols=75 Identities=21% Similarity=0.271 Sum_probs=48.9
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 028596 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSK 114 (207)
Q Consensus 40 A~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~---~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDvaK 114 (207)
++...+++|+.|...+.+.+..=-.++.++...+..|...+- ++|.++......+..|.+-+....+.|.-++.+
T Consensus 535 ~lt~~~~~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~ 612 (698)
T KOG0978|consen 535 GLTSNESKLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELER 612 (698)
T ss_pred HhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666677777776666666666666666666666666555 666677777777777777666666666655443
No 358
>PF09311 Rab5-bind: Rabaptin-like protein; InterPro: IPR015390 This domain is predominantly found in Rabaptin and allows for binding to the GTPase Rab5. This interaction is necessary and sufficient for Rab5-dependent recruitment of Rabaptin5 to early endosomal membranes []. ; PDB: 3NF1_A 3CEQ_B 3EDT_H 1X79_C 1TU3_F.
Probab=64.98 E-value=6.4 Score=32.99 Aligned_cols=75 Identities=19% Similarity=0.231 Sum_probs=19.1
Q ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 028596 36 ITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSK 114 (207)
Q Consensus 36 Its~A~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDvaK 114 (207)
=+-+++...++.|+.+-.+|+.++.-=.+...-|+.+++.-...|+ .+.++..+|-.|++-|...+-+..-|+.-
T Consensus 8 q~~~~l~~~L~~l~~erqkl~~qv~rL~qEN~~Lr~el~~tq~~lq----~se~~~~~Lpee~~~Lqfl~~~~r~d~~~ 82 (181)
T PF09311_consen 8 QVMRALQQHLQSLEAERQKLRAQVRRLCQENDWLRGELANTQQKLQ----ESEQEVAQLPEEVKHLQFLVSIKREDLIE 82 (181)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHT---------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhhhhhhcCcchHHHHHHHHHhccccccc
Confidence 3677899999999999999998877666666677766665555554 77788888888888887776666655443
No 359
>COG5374 Uncharacterized conserved protein [Function unknown]
Probab=64.96 E-value=17 Score=32.14 Aligned_cols=36 Identities=19% Similarity=0.436 Sum_probs=21.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 45 VSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSL 80 (207)
Q Consensus 45 Vs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L 80 (207)
...+|++.-.|+..+..++..+++||++...++..+
T Consensus 138 ~D~~eA~~t~lk~~~~~~~~~le~Lqkn~~~~~k~~ 173 (192)
T COG5374 138 IDKMEADSTDLKARLRKAQILLEGLQKNQEELFKLL 173 (192)
T ss_pred hhhhhcchHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 345566666666666666666666665555554444
No 360
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=64.91 E-value=1.1e+02 Score=29.94 Aligned_cols=83 Identities=20% Similarity=0.338 Sum_probs=54.0
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 028596 42 STRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKT 121 (207)
Q Consensus 42 atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDvaKLE~FKk~ 121 (207)
..++-.|+.+-++|.. ...+|+.+.+.+-.++...++.-.++...|..|...|...++.+...+..++.=-.+
T Consensus 28 ~~~~~~ld~~~r~~~~-------~~e~l~~~rn~~sk~ig~~~~~~~~~~~~l~~e~~~l~~~l~~~e~~~~~~~~~l~~ 100 (429)
T COG0172 28 VDKLLELDEERRKLLR-------ELEELQAERNELSKEIGRALKRGEDDAEELIAEVKELKEKLKELEAALDELEAELDT 100 (429)
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3334444444444444 344555555555555542223323356789999999999999999999999988888
Q ss_pred HHhhcccccC
Q 028596 122 LVQSLKDDED 131 (207)
Q Consensus 122 LmqSLq~D~~ 131 (207)
+|.+|.+-..
T Consensus 101 ~ll~ipNi~~ 110 (429)
T COG0172 101 LLLTIPNIPH 110 (429)
T ss_pred HHHhCCCCCc
Confidence 9998876543
No 361
>PF10458 Val_tRNA-synt_C: Valyl tRNA synthetase tRNA binding arm; InterPro: IPR019499 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the C-terminal domain of Valyl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Valyl-tRNA synthetase (6.1.1.9 from EC) is an alpha monomer that belongs to class Ia.; GO: 0000166 nucleotide binding, 0004832 valine-tRNA ligase activity, 0005524 ATP binding, 0006438 valyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 1IVS_B 1GAX_B.
Probab=64.76 E-value=43 Score=23.74 Aligned_cols=27 Identities=22% Similarity=0.430 Sum_probs=16.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 48 LESEHSALRSQLAEKDSRIAELQSQIE 74 (207)
Q Consensus 48 LEsE~~~LR~~LaEKd~~i~eLq~rvs 74 (207)
++.|+.+|..++..=...|..++.+++
T Consensus 2 ~~~E~~rL~Kel~kl~~~i~~~~~kL~ 28 (66)
T PF10458_consen 2 VEAEIERLEKELEKLEKEIERLEKKLS 28 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 466777777666665555555555554
No 362
>PF09302 XLF: XLF (XRCC4-like factor); InterPro: IPR015381 XLF (also called Cernunnos) interacts with the XRCC4-DNA ligase IV complex to promote DNA non-homologous end-joining. It directly interacts with the XRCC4-Ligase IV complex and siRNA-mediated downregulation of XLF in human cell lines leads to radio-sensitivity and impaired DNA non-homologous end-joining []. XLF is homologous to the yeast non-homologous end-joining factor Nej1 []. ; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z56_A 3RWR_D 3Q4F_A 3SR2_H 2R9A_A 2QM4_C.
Probab=64.72 E-value=9.8 Score=30.84 Aligned_cols=43 Identities=26% Similarity=0.386 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 31 DVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIE 74 (207)
Q Consensus 31 dlArkIts~A~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs 74 (207)
.+++.+..- +...+..++.++..|...|.+||..|..|.+++.
T Consensus 128 ~~~~~L~~P-ll~~~~~l~~~~~~L~~~l~~KD~~i~~l~~~~~ 170 (171)
T PF09302_consen 128 QFLSHLNSP-LLRMSSALQRQVESLKDLLKEKDKEIEKLRDKLE 170 (171)
T ss_dssp HHHHHTHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 455544433 4455678888999999999999999999987653
No 363
>COG5493 Uncharacterized conserved protein containing a coiled-coil domain [Function unknown]
Probab=64.57 E-value=1.1e+02 Score=27.71 Aligned_cols=59 Identities=29% Similarity=0.339 Sum_probs=29.9
Q ss_pred CCChHHHHhhCCCCchhhHHHHHHHHHHHHHHhhhhhHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 12 FDLPEEVLQVLPSDPFEQLDVARKITSIAISTRVSDLESEHSAL--RSQLAEKDSRIAELQSQIESIYSS 79 (207)
Q Consensus 12 f~Lp~eilsvLP~DP~EQLdlArkIts~A~atRVs~LEsE~~~L--R~~LaEKd~~i~eLq~rvs~Le~~ 79 (207)
+.|-+||-.||-.+|..=.| ++.+|-.-|+.-..+| ++++++| +.+.+|.+.+...+..
T Consensus 1 msL~Eeikrvl~enpeilvd--------vL~~Rpeilye~l~kL~pwq~latk-~dve~l~~e~E~~~k~ 61 (231)
T COG5493 1 MSLAEEIKRVLLENPEILVD--------VLTQRPEILYEVLAKLTPWQQLATK-QDVEELRKETEQRQKE 61 (231)
T ss_pred CCHHHHHHHHHHhCcHHHHH--------HHHhChHHHHHHHHhhchHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 35677888888887744333 3344444444444444 3444444 3444444444443333
No 364
>TIGR01554 major_cap_HK97 phage major capsid protein, HK97 family. This family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease.
Probab=64.39 E-value=1.1e+02 Score=27.82 Aligned_cols=6 Identities=33% Similarity=0.822 Sum_probs=2.2
Q ss_pred HHHHHH
Q 028596 68 ELQSQI 73 (207)
Q Consensus 68 eLq~rv 73 (207)
+|++++
T Consensus 38 ~l~~~~ 43 (378)
T TIGR01554 38 ELETDV 43 (378)
T ss_pred HHHHHH
Confidence 333333
No 365
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=64.36 E-value=37 Score=26.48 Aligned_cols=33 Identities=12% Similarity=0.158 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 028596 84 LGQAQADKERLSKENEALTNTVRKLQRDVSKLE 116 (207)
Q Consensus 84 L~~a~ee~~kL~kE~~sLa~TVKkL~RDvaKLE 116 (207)
..+..++.+.+..|++.|.+.-..|.++|..|.
T Consensus 29 ~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~ 61 (105)
T PRK00888 29 YWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLK 61 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 344555555566666666666666666655554
No 366
>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits. Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.
Probab=64.32 E-value=18 Score=27.29 Aligned_cols=63 Identities=19% Similarity=0.359 Sum_probs=44.3
Q ss_pred CCChHHHHhhCCCCchhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 12 FDLPEEVLQVLPSDPFEQLDVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESI 76 (207)
Q Consensus 12 f~Lp~eilsvLP~DP~EQLdlArkIts~A~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~L 76 (207)
+.-++.|+-.|-.+=|-...+.. +-.=+..|+..|+..+..|+.++.+...+|..++..+..+
T Consensus 55 i~~~~~vlV~lG~~~~vE~s~~e--A~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~ 117 (120)
T PF02996_consen 55 IPDTDKVLVSLGAGYYVEMSLEE--AIEFLKKRIKELEEQLEKLEKELAELQAQIEQLEQTLQQL 117 (120)
T ss_dssp -SSTTEEEEEEETTEEEEEEHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred eCCCCEEEEEeeCCeEEEecHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666665555554 3334678899999999999999998888888888776654
No 367
>TIGR00019 prfA peptide chain release factor 1. This model describes peptide chain release factor 1 (PrfA, RF-1), and excludes the related peptide chain release factor 2 (PrfB, RF-2). RF-1 helps recognize and terminate translation at UAA and UAG stop codons. The mitochondrial release factors are prfA-like, although not included above the trusted cutoff for this model. RF-1 does not have a translational frameshift.
Probab=64.28 E-value=1.3e+02 Score=28.53 Aligned_cols=27 Identities=19% Similarity=0.374 Sum_probs=17.2
Q ss_pred HHHHHHHHHHhhhHHHHHH-HHHHHHhh
Q 028596 99 EALTNTVRKLQRDVSKLEV-FRKTLVQS 125 (207)
Q Consensus 99 ~sLa~TVKkL~RDvaKLE~-FKk~LmqS 125 (207)
..+...++.|...+.+||. ++..||-+
T Consensus 78 ~~a~~e~~~l~~~~~~~e~~l~~~ll~~ 105 (360)
T TIGR00019 78 EMAKEELEELEEKIEELEEQLKVLLLPK 105 (360)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 3455677778888888875 45545543
No 368
>PRK00106 hypothetical protein; Provisional
Probab=64.05 E-value=1.6e+02 Score=29.38 Aligned_cols=41 Identities=12% Similarity=0.289 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcc
Q 028596 87 AQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLK 127 (207)
Q Consensus 87 a~ee~~kL~kE~~sLa~TVKkL~RDvaKLE~FKk~LmqSLq 127 (207)
..++..+|.+....|...-+.|.+--..++.+.....+-|.
T Consensus 120 LekrE~eLe~kekeLe~reeeLee~~~~~~~~~~~~~~~Le 160 (535)
T PRK00106 120 LSSKEKTLESKEQSLTDKSKHIDEREEQVEKLEEQKKAELE 160 (535)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333344444444444444444444444445555544443
No 369
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=63.98 E-value=91 Score=31.37 Aligned_cols=76 Identities=25% Similarity=0.392 Sum_probs=38.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhHHHHHHHHHH
Q 028596 45 VSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQ---RDVSKLEVFRKT 121 (207)
Q Consensus 45 Vs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~~sLa~TVKkL~---RDvaKLE~FKk~ 121 (207)
+..|..++..|+.++.+-...+..++..+..++.++. ....++..|.++......++.=|. ..++||+.+..+
T Consensus 330 l~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~----~~~~~~~~le~~~~l~~k~~~lL~d~e~ni~kL~~~v~~ 405 (594)
T PF05667_consen 330 LEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELE----EKEAENEELEEELKLKKKTVELLPDAEENIAKLQALVEA 405 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 3344444444444444444444445444444444443 555555566666555444444333 446666666554
Q ss_pred HHh
Q 028596 122 LVQ 124 (207)
Q Consensus 122 Lmq 124 (207)
-++
T Consensus 406 s~~ 408 (594)
T PF05667_consen 406 SEQ 408 (594)
T ss_pred HHH
Confidence 444
No 370
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=63.78 E-value=1e+02 Score=34.08 Aligned_cols=39 Identities=21% Similarity=0.232 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Q 028596 87 AQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQS 125 (207)
Q Consensus 87 a~ee~~kL~kE~~sLa~TVKkL~RDvaKLE~FKk~LmqS 125 (207)
....+.+|.+|...+.....+++-.+.|+...+|+|-..
T Consensus 513 l~~~~~~~~eele~~q~~~~~~~~~~~kv~~~rk~le~~ 551 (1317)
T KOG0612|consen 513 LEALVRQLEEELEDAQKKNDNAADSLEKVNSLRKQLEEA 551 (1317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHh
Confidence 333333344444444444444444455555556655543
No 371
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=63.44 E-value=1.2e+02 Score=29.56 Aligned_cols=39 Identities=18% Similarity=0.341 Sum_probs=20.0
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 43 TRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (207)
Q Consensus 43 tRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~ 81 (207)
..+..+..|+...+..|......+..|+.-+.+|...|.
T Consensus 281 ~~l~s~~~ELe~ak~~L~~~k~E~~~L~~~vesL~~ELe 319 (522)
T PF05701_consen 281 SSLASAKKELEEAKKELEKAKEEASSLRASVESLRSELE 319 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555555555555555555444
No 372
>COG3524 KpsE Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=63.40 E-value=1.1e+02 Score=29.33 Aligned_cols=88 Identities=33% Similarity=0.439 Sum_probs=56.0
Q ss_pred CchhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH---H---------HHH
Q 028596 25 DPFEQLDVARKITSIAISTRVSDLESEHSALRSQLAEKDS-------RIAELQSQIESIYSSLS---D---------KLG 85 (207)
Q Consensus 25 DP~EQLdlArkIts~A~atRVs~LEsE~~~LR~~LaEKd~-------~i~eLq~rvs~Le~~L~---~---------rL~ 85 (207)
||-+|=+|+ .+=|++||.|.-.+-.+|.-=.. .|-.|..|+.+|..+|. . .|.
T Consensus 213 dp~~qaevq--------~~Lvs~Le~eL~~iqaqL~tvks~m~~~nPqi~~LkarieSlrkql~qe~q~isag~~~~sl~ 284 (372)
T COG3524 213 DPKAQAEVQ--------MSLVSKLEDELIVIQAQLDTVKSVMNPENPQIPGLKARIESLRKQLLQEKQAISAGGSSQSLS 284 (372)
T ss_pred ChhhhhHHH--------HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHhcCCCCccchh
Confidence 677777776 35678889888888888874333 35788889998888886 1 233
Q ss_pred HHHHHHHHHHHHH----HHHHHHHHHHhhhHHHHHHHHHHH
Q 028596 86 QAQADKERLSKEN----EALTNTVRKLQRDVSKLEVFRKTL 122 (207)
Q Consensus 86 ~a~ee~~kL~kE~----~sLa~TVKkL~RDvaKLE~FKk~L 122 (207)
.-..+-+.|.=|| ..+++.++.|. -||.|+-++++
T Consensus 285 ~qaAefq~l~lE~~fAekay~AAl~SlE--sArieAdrqq~ 323 (372)
T COG3524 285 NQAAEFQRLYLENTFAEKAYAAALTSLE--SARIEADRQQL 323 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhhhhhhhh
Confidence 3333344444444 24555555553 36677777665
No 373
>KOG0241 consensus Kinesin-like protein [Cytoskeleton]
Probab=63.40 E-value=45 Score=36.59 Aligned_cols=65 Identities=23% Similarity=0.408 Sum_probs=44.5
Q ss_pred HHHHHHHHHHH------HHhhhhhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHH
Q 028596 31 DVARKITSIAI------STRVSDLESEHSALRSQLAEKDS-RIAELQSQIESIYSSLS-------DKLGQAQADKERLS 95 (207)
Q Consensus 31 dlArkIts~A~------atRVs~LEsE~~~LR~~LaEKd~-~i~eLq~rvs~Le~~L~-------~rL~~a~ee~~kL~ 95 (207)
|=|+||..+|+ +.=+..|-.|+..||.+|..+++ ...+|++|+..++.-+. .||+...+-+..++
T Consensus 346 drAkrIvN~avvNedpnarvirElReEve~lr~qL~~ae~~~~~el~e~l~esekli~ei~~twEEkl~ktE~in~erq 424 (1714)
T KOG0241|consen 346 DRAKRIVNHAVVNEDPNARVIRELREEVEKLREQLEQAEAMKLPELKEKLEESEKLIKEITVTWEEKLRKTEEINQERQ 424 (1714)
T ss_pred HHHHHhhccccccCCchHHHHHHHHHHHHHHHHHHhhhhhccchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 67899999987 34456788899999999987554 45777777777665554 55554444333333
No 374
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=63.30 E-value=31 Score=28.00 Aligned_cols=54 Identities=22% Similarity=0.300 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhHHHHHH
Q 028596 64 SRIAELQSQIESIYSSLSDKLGQAQADKE-RLSKENEALTNTVRKLQRDVSKLEV 117 (207)
Q Consensus 64 ~~i~eLq~rvs~Le~~L~~rL~~a~ee~~-kL~kE~~sLa~TVKkL~RDvaKLE~ 117 (207)
..+.+++..-..++...+.|+...+++-. -=+++-+.|...|..|.|.|++||+
T Consensus 50 dl~~q~k~~~~e~e~K~~r~i~~ml~~~~~~r~~~~~~l~~rvd~Lerqv~~Len 104 (108)
T COG3937 50 DLLRQAKEAQGELEEKIPRKIEEMLSDLEVARQSEMDELTERVDALERQVADLEN 104 (108)
T ss_pred HHHHHHHHHhhhHHHhhhHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555566666665544 1123558888899999999999987
No 375
>KOG2662 consensus Magnesium transporters: CorA family [Inorganic ion transport and metabolism]
Probab=63.19 E-value=84 Score=30.73 Aligned_cols=75 Identities=24% Similarity=0.406 Sum_probs=54.8
Q ss_pred Cchh--hHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 25 DPFE--QLDVARKITSIAISTRVSDLESEHSALRSQLA-----EKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKE 97 (207)
Q Consensus 25 DP~E--QLdlArkIts~A~atRVs~LEsE~~~LR~~La-----EKd~~i~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE 97 (207)
-||| =|++|.--....+.+|+..||-++-.+=+.|. ++=+++..+.++++.|..-.+ ...|+...|.++
T Consensus 174 lPFEFrALE~aLe~~~s~L~~~~~~Le~~~~~~LdeLt~~is~~nL~~lr~~k~~Lt~l~~rvq----kvRDeLe~LLdd 249 (414)
T KOG2662|consen 174 LPFEFRALEVALEAACSFLDSRLSELETEAYPLLDELTNKISTLNLERLRILKKRLTELTSRVQ----KVRDELEELLDD 249 (414)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhHHHHHHHHHHH----HHHHHHHHHhcC
Confidence 3555 58888877778899999999998766655553 566677777777777776666 777777777777
Q ss_pred HHHHHH
Q 028596 98 NEALTN 103 (207)
Q Consensus 98 ~~sLa~ 103 (207)
.+.++.
T Consensus 250 d~Dma~ 255 (414)
T KOG2662|consen 250 DDDMAE 255 (414)
T ss_pred hHHHHH
Confidence 776665
No 376
>PF05859 Mis12: Mis12 protein; InterPro: IPR008685 Kinetochores are the chromosomal sites for spindle interaction and play a vital role for chromosome segregation. Fission Saccharomyces cerevisiae kinetochore protein Mis12, is required for correct spindle morphogenesis, determining metaphase spindle length []. Thirty-five to sixty percent extension of metaphase spindle length takes place in Mis12 mutants []. It has been shown that Mis12 might genetically interact with Mal2p [].; GO: 0007049 cell cycle, 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=63.06 E-value=6.1 Score=31.90 Aligned_cols=55 Identities=29% Similarity=0.394 Sum_probs=37.7
Q ss_pred CCCChHHHH--hhCCCCchhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 028596 11 TFDLPEEVL--QVLPSDPFEQLDVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQ 70 (207)
Q Consensus 11 ~f~Lp~eil--svLP~DP~EQLdlArkIts~A~atRVs~LEsE~~~LR~~LaEKd~~i~eLq 70 (207)
=|.+|.++| .++...+++-+++.. .-...-..|+.|+..||.+|.+.-..-..|+
T Consensus 86 if~IP~~llp~~~~~l~~~~~~~~~~-----~~~~~~~~ld~el~~lr~kL~~~~~~~~~L~ 142 (144)
T PF05859_consen 86 IFSIPEDLLPEDWIRLYHHEGLDFSS-----NQLEEDYELDAELEQLRRKLEEQRKLNAELE 142 (144)
T ss_pred cccCChhhcchhhhcccccccccccc-----ccccchhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 478886654 255566666666543 3344557889999999999988777766665
No 377
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=63.03 E-value=1.4e+02 Score=28.23 Aligned_cols=7 Identities=71% Similarity=0.975 Sum_probs=3.9
Q ss_pred Hhhcccc
Q 028596 123 VQSLKDD 129 (207)
Q Consensus 123 mqSLq~D 129 (207)
||.|.++
T Consensus 166 vqRLkdE 172 (333)
T KOG1853|consen 166 VQRLKDE 172 (333)
T ss_pred HHHHHHH
Confidence 4555555
No 378
>PF04576 Zein-binding: Zein-binding; InterPro: IPR007656 This is a family of uncharacterised proteins.
Probab=62.91 E-value=75 Score=25.17 Aligned_cols=42 Identities=29% Similarity=0.349 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh--------hHHHHHHHHHHHHh
Q 028596 83 KLGQAQADKERLSKENEALTNTVRKLQR--------DVSKLEVFRKTLVQ 124 (207)
Q Consensus 83 rL~~a~ee~~kL~kE~~sLa~TVKkL~R--------DvaKLE~FKk~Lmq 124 (207)
--.++.-.+.+|++||.++..-.+-..| |-.-|+.|+-.|++
T Consensus 32 AA~EAMaMI~RLQ~EKAa~~mEA~Qy~Rm~EEk~~yD~e~ie~L~~~l~~ 81 (94)
T PF04576_consen 32 AASEAMAMILRLQEEKAAVEMEARQYQRMAEEKAEYDQEAIESLKDILYK 81 (94)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3347778899999999998877765544 44455555555443
No 379
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=62.83 E-value=53 Score=26.35 Aligned_cols=33 Identities=30% Similarity=0.382 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 028596 83 KLGQAQADKERLSKENEALTNTVRKLQRDVSKL 115 (207)
Q Consensus 83 rL~~a~ee~~kL~kE~~sLa~TVKkL~RDvaKL 115 (207)
.+....+....|.+||..|.---..|.+-++++
T Consensus 23 el~~LK~~~~el~EEN~~L~iEN~~Lr~~l~~~ 55 (110)
T PRK13169 23 ELGALKKQLAELLEENTALRLENDKLRERLEEL 55 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334666677777777777777666666666654
No 380
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=62.82 E-value=7.6 Score=34.92 Aligned_cols=24 Identities=42% Similarity=0.488 Sum_probs=19.7
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHH
Q 028596 37 TSIAISTRVSDLESEHSALRSQLA 60 (207)
Q Consensus 37 ts~A~atRVs~LEsE~~~LR~~La 60 (207)
..-|-..|++.||.|+.+||.|+|
T Consensus 116 ~~~~AlqKIsALEdELs~LRaQIA 139 (253)
T PF05308_consen 116 ANEAALQKISALEDELSRLRAQIA 139 (253)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566899999999999999875
No 381
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=62.75 E-value=28 Score=26.47 Aligned_cols=34 Identities=24% Similarity=0.378 Sum_probs=16.0
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQI 73 (207)
Q Consensus 40 A~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rv 73 (207)
.+..|+..|+.++.+|..++.+....+.+++.++
T Consensus 67 ~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l 100 (105)
T cd00632 67 ELKERLETIELRIKRLERQEEDLQEKLKELQEKI 100 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444443
No 382
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=62.55 E-value=86 Score=34.19 Aligned_cols=52 Identities=21% Similarity=0.304 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHH---hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 30 LDVARKITSIAIST---RVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (207)
Q Consensus 30 LdlArkIts~A~at---RVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~ 81 (207)
|+.-+|+..+.+-. |+..||+.+..|+.++.+.+..+..|..+++++.+.+.
T Consensus 386 ln~~~r~~~~~ld~~~~~~~elE~r~k~l~~sver~~~~~~~L~~~i~s~~~~~~ 440 (1141)
T KOG0018|consen 386 LNRNMRSDQDTLDHELERRAELEARIKQLKESVERLDKRRNKLAAKITSLSRSYE 440 (1141)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556777776644 78899999999999999999999999999999888887
No 383
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=62.55 E-value=91 Score=29.21 Aligned_cols=31 Identities=26% Similarity=0.336 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 51 EHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (207)
Q Consensus 51 E~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~ 81 (207)
++..|...|+.|-+.....|+.|++|-.++.
T Consensus 214 qia~LseELa~k~Ee~~rQQEEIt~Llsqiv 244 (306)
T PF04849_consen 214 QIASLSEELARKTEENRRQQEEITSLLSQIV 244 (306)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666666666666666666666666655
No 384
>PF07794 DUF1633: Protein of unknown function (DUF1633); InterPro: IPR012436 This family contains sequences derived from a group of hypothetical proteins expressed by Arabidopsis thaliana (Mouse-ear cress). These sequences are highly similar and the region concerned is about 100 residues long.
Probab=62.41 E-value=41 Score=34.37 Aligned_cols=89 Identities=15% Similarity=0.200 Sum_probs=60.2
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------HHHHHHHHHHHH
Q 028596 38 SIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS------------------------DKLGQAQADKER 93 (207)
Q Consensus 38 s~A~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~------------------------~rL~~a~ee~~k 93 (207)
...|+.|+.-+|-||+.|+....-|.+.|+.|+.+-..|+..+. .||-.-..|+=-
T Consensus 592 ekG~Aeki~~me~Ei~glq~DkQ~ar~qIh~Le~~Reelsk~V~DLtssaQgakKAVhdaK~ElA~~Y~klLagiKEKwv 671 (790)
T PF07794_consen 592 EKGYAEKIGFMEMEIGGLQADKQTARNQIHRLEQRREELSKRVMDLTSSAQGAKKAVHDAKVELAAAYSKLLAGIKEKWV 671 (790)
T ss_pred hhhhHhhhhhhhhhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34789999999999999999999999999998887777665543 122221222222
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhc
Q 028596 94 LSKENEALTNTVRKLQRDVSKLEVFRKTLVQSL 126 (207)
Q Consensus 94 L~kE~~sLa~TVKkL~RDvaKLE~FKk~LmqSL 126 (207)
-.||--.|..+.-.+...++-++..-|+-+++-
T Consensus 672 ~KKe~t~le~qAaEvesNlaLidqi~kaaIdlt 704 (790)
T PF07794_consen 672 AKKEYTVLEGQAAEVESNLALIDQITKAAIDLT 704 (790)
T ss_pred hhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 234555566666666667777777767666654
No 385
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=62.38 E-value=2.2e+02 Score=30.47 Aligned_cols=50 Identities=20% Similarity=0.362 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccccC
Q 028596 82 DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLKDDED 131 (207)
Q Consensus 82 ~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDvaKLE~FKk~LmqSLq~D~~ 131 (207)
..+..+..+..++.++++....+++.+.+.+.+++.=...|-.-|....+
T Consensus 490 ~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~L~p~~g 539 (1201)
T PF12128_consen 490 QAVEELQAEEQELRKERDQAEEELRQARRELEELRAQIAELQRQLDPQKG 539 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCC
Confidence 34446666667777778888888888888888877766666666654443
No 386
>PF14257 DUF4349: Domain of unknown function (DUF4349)
Probab=62.09 E-value=66 Score=27.82 Aligned_cols=37 Identities=16% Similarity=0.326 Sum_probs=16.7
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 44 RVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSL 80 (207)
Q Consensus 44 RVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L 80 (207)
+|...--....+..+..+-+..+..|+.....|..-|
T Consensus 119 ~v~~~~~~~~DvT~~y~D~~arl~~l~~~~~rl~~ll 155 (262)
T PF14257_consen 119 KVTSRNISSEDVTEQYVDLEARLKNLEAEEERLLELL 155 (262)
T ss_pred ceeeeeccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344455555555555544444444444433
No 387
>COG1777 Predicted transcriptional regulators [Transcription]
Probab=62.07 E-value=62 Score=29.14 Aligned_cols=70 Identities=27% Similarity=0.317 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 028596 52 HSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLV 123 (207)
Q Consensus 52 ~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~---~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDvaKLE~FKk~Lm 123 (207)
+..+-..|.++.+++.+|..+-..|+..+. +|++...++..-.-.++.-|..-.+...++|+ |+++++.+
T Consensus 120 ~~~l~srl~~~~~~~e~l~~~~~~L~~~~~el~~rik~~ied~~~~~~~~~vl~~l~~n~~~~v~--E~~r~~~~ 192 (217)
T COG1777 120 ISELISRLLEINREIEELSRAQTELQKQLNELMDRIKEEIEDKDGDMTERIVLEYLLKNGAADVE--ETSRRTVL 192 (217)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHhhhhhHHH--HHHhccch
Confidence 455566667777777777777777777766 78888888887777777777777777777776 45555443
No 388
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=62.07 E-value=1e+02 Score=32.97 Aligned_cols=42 Identities=17% Similarity=0.291 Sum_probs=28.4
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (207)
Q Consensus 40 A~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~ 81 (207)
++...+..|+-|...|..++.++-..+..|.++++-|..+|.
T Consensus 675 ~lkQ~~~~l~~e~eeL~~~vq~~~s~hsql~~q~~~Lk~qLg 716 (970)
T KOG0946|consen 675 NLKQMEKELQVENEELEEEVQDFISEHSQLKDQLDLLKNQLG 716 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 555666666666666666666666666777777777776665
No 389
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=61.88 E-value=24 Score=36.71 Aligned_cols=27 Identities=22% Similarity=0.337 Sum_probs=12.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 48 LESEHSALRSQLAEKDSRIAELQSQIE 74 (207)
Q Consensus 48 LEsE~~~LR~~LaEKd~~i~eLq~rvs 74 (207)
+++|+.+|..++..-+..|..++.+++
T Consensus 927 ~~~E~~rL~K~l~kl~~ei~~~~~kL~ 953 (995)
T PTZ00419 927 LKKELAKLEKKLAKLQKSLESYLKKIS 953 (995)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 345555555444444444444444443
No 390
>PF06810 Phage_GP20: Phage minor structural protein GP20; InterPro: IPR009636 This family consists of several phage minor structural protein Gp20 sequences and prophage sequences of around 180 residues in length. The function of this family is unknown.; GO: 0005198 structural molecule activity
Probab=61.66 E-value=69 Score=26.59 Aligned_cols=29 Identities=10% Similarity=0.198 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 52 HSALRSQLAEKDSRIAELQSQIESIYSSL 80 (207)
Q Consensus 52 ~~~LR~~LaEKd~~i~eLq~rvs~Le~~L 80 (207)
+...+.++.+....+..|+.++...+.+|
T Consensus 15 i~~~K~~~~~~~~e~~~~k~ql~~~d~~i 43 (155)
T PF06810_consen 15 IEAPKAKVDKVKEERDNLKTQLKEADKQI 43 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555556666655555555
No 391
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=61.62 E-value=86 Score=32.84 Aligned_cols=60 Identities=27% Similarity=0.409 Sum_probs=45.0
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Q 028596 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQ-------SQIESIYSSLS---DKLGQAQADKERLSKENE 99 (207)
Q Consensus 40 A~atRVs~LEsE~~~LR~~LaEKd~~i~eLq-------~rvs~Le~~L~---~rL~~a~ee~~kL~kE~~ 99 (207)
-|..-|+.-|.+++-|-.++.+|+..|.+|. ++++.|+..-. .-|+.+.+++.-|..|-.
T Consensus 230 ey~~E~n~kEkqvs~L~~q~~eKen~~kdl~~~l~es~~~~~qLeE~~~~q~E~Lkes~~~qe~L~~eL~ 299 (786)
T PF05483_consen 230 EYKKEVNDKEKQVSLLQTQLKEKENKIKDLLLLLQESQDKCNQLEEKTKEQHENLKESNEEQEHLLQELE 299 (786)
T ss_pred HHHHHhhhHHHHHHHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHH
Confidence 5677888889999999999999999987764 44555554433 667777777777776655
No 392
>PF13863 DUF4200: Domain of unknown function (DUF4200)
Probab=61.53 E-value=70 Score=24.37 Aligned_cols=85 Identities=19% Similarity=0.294 Sum_probs=62.5
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 028596 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLE 116 (207)
Q Consensus 40 A~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~---~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDvaKLE 116 (207)
.+..|-..|+..-..|+..+..=+.-+.+-..+...+..... ..-.....++.+|..+...|..-+.++...|.++.
T Consensus 29 ~~~~~e~~L~~~e~~l~~~~~~f~~flken~~k~~rA~k~a~~e~k~~~~k~~ei~~l~~~l~~l~~~~~k~e~~l~~~~ 108 (126)
T PF13863_consen 29 QLKQREEELEKKEQELEEDVIKFDKFLKENEAKRERAEKRAEEEKKKKEEKEAEIKKLKAELEELKSEISKLEEKLEEYK 108 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666677777777777777777777777777766665555554 44456667778888888888888888888888888
Q ss_pred HHHHHHHh
Q 028596 117 VFRKTLVQ 124 (207)
Q Consensus 117 ~FKk~Lmq 124 (207)
.|+.-|.+
T Consensus 109 ~Y~~fL~~ 116 (126)
T PF13863_consen 109 KYEEFLEK 116 (126)
T ss_pred HHHHHHHH
Confidence 88877665
No 393
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=61.41 E-value=1.6e+02 Score=32.01 Aligned_cols=12 Identities=33% Similarity=0.440 Sum_probs=6.4
Q ss_pred HHHHhhhhhHHH
Q 028596 40 AISTRVSDLESE 51 (207)
Q Consensus 40 A~atRVs~LEsE 51 (207)
++..++..+|.|
T Consensus 184 ~l~~~~~~l~~~ 195 (1109)
T PRK10929 184 ALKALVDELELA 195 (1109)
T ss_pred HHHHHHHHHHHH
Confidence 455555555554
No 394
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=61.36 E-value=1e+02 Score=28.79 Aligned_cols=65 Identities=15% Similarity=0.376 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 028596 47 DLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKL 115 (207)
Q Consensus 47 ~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDvaKL 115 (207)
.|..++..+|.+-.++.....++.+++.++-.... ..+++..+|-.+++.+-..+-.|.+++.+|
T Consensus 31 El~~~~~~~~ekRdeln~kvrE~~e~~~elr~~rd----eineev~elK~kR~ein~kl~eL~~~~~~l 95 (294)
T COG1340 31 ELRKEASELAEKRDELNAKVRELREKAQELREERD----EINEEVQELKEKRDEINAKLQELRKEYREL 95 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 395
>PF14992 TMCO5: TMCO5 family
Probab=61.34 E-value=35 Score=31.55 Aligned_cols=24 Identities=42% Similarity=0.686 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q 028596 88 QADKERLSKENEALTNTVRKLQRD 111 (207)
Q Consensus 88 ~ee~~kL~kE~~sLa~TVKkL~RD 111 (207)
..+.++|.+++..|...|-.|++.
T Consensus 69 e~e~~~LE~~ne~l~~~~~elq~k 92 (280)
T PF14992_consen 69 ELETAKLEKENEHLSKSVQELQRK 92 (280)
T ss_pred HhhhHHHhhhhHhhhhhhhhhhhh
Confidence 344445555555554444444444
No 396
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=61.26 E-value=1.2e+02 Score=26.88 Aligned_cols=36 Identities=17% Similarity=0.325 Sum_probs=13.9
Q ss_pred hhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q 028596 46 SDLESEHSALRSQLAEK-DSRIAELQSQIESIYSSLS 81 (207)
Q Consensus 46 s~LEsE~~~LR~~LaEK-d~~i~eLq~rvs~Le~~L~ 81 (207)
..+...+..++..|... .+.+...+.++..+...+.
T Consensus 146 ~~~~~~l~~~~~~l~~~~~~~l~~~~~~L~~l~~~l~ 182 (319)
T PF02601_consen 146 RELLQRLDELRQRLNRAMRNRLQRKRQRLNQLAKRLQ 182 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444444322 2233333344444444443
No 397
>PF13935 Ead_Ea22: Ead/Ea22-like protein
Probab=61.22 E-value=86 Score=25.30 Aligned_cols=71 Identities=17% Similarity=0.288 Sum_probs=43.5
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhHHHHH
Q 028596 42 STRVSDLESEHSALRSQLAEKDSR--IAELQSQIESIYSSLSDKLGQAQADK-ERLSKENEALTNTVRKLQRDVSKLE 116 (207)
Q Consensus 42 atRVs~LEsE~~~LR~~LaEKd~~--i~eLq~rvs~Le~~L~~rL~~a~ee~-~kL~kE~~sLa~TVKkL~RDvaKLE 116 (207)
-.=|-.|-.|+.++.+...+-++. ..++...+..|...|. .+...+ .++..++......+..+.+-++-||
T Consensus 66 P~tvLALLDElE~~~~~i~~~~~~~e~~~~a~~~~~l~~~Le----~ae~~~~~~~~~~~~~~e~~~~~~~~riaEle 139 (139)
T PF13935_consen 66 PATVLALLDELERAQQRIAELEQECENEDIALDVQKLRVELE----AAEKRIAAELAEQAEAYEGEIADYAKRIAELE 139 (139)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcC
Confidence 344555666666665555555544 6666666666666665 444444 5666777777777777777666654
No 398
>PRK00295 hypothetical protein; Provisional
Probab=61.20 E-value=61 Score=23.56 Aligned_cols=43 Identities=14% Similarity=0.072 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 028596 66 IAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDV 112 (207)
Q Consensus 66 i~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDv 112 (207)
|.+|+.|++-.|..+. ...+...+.+++.+.|...++.|...+
T Consensus 7 i~~LE~kla~qE~tie----~Ln~~v~~Qq~~I~~L~~ql~~L~~rl 49 (68)
T PRK00295 7 VTELESRQAFQDDTIQ----ALNDVLVEQQRVIERLQLQMAALIKRQ 49 (68)
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555554443 555556666666677776666665533
No 399
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=61.09 E-value=1.4e+02 Score=31.00 Aligned_cols=16 Identities=38% Similarity=0.482 Sum_probs=7.1
Q ss_pred hhhhHHHHHHHHHHHH
Q 028596 45 VSDLESEHSALRSQLA 60 (207)
Q Consensus 45 Vs~LEsE~~~LR~~La 60 (207)
|..|-.|+..||.++.
T Consensus 368 v~~Lk~ELk~Lk~k~~ 383 (717)
T PF09730_consen 368 VIQLKAELKALKSKYN 383 (717)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444433
No 400
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=60.99 E-value=99 Score=33.74 Aligned_cols=72 Identities=28% Similarity=0.373 Sum_probs=46.5
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 028596 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLE 116 (207)
Q Consensus 41 ~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDvaKLE 116 (207)
...+.+.|..|+..++..+.+|+.+|.+|..-+.... +|+.....++..+..+++.|..+=|.|-|.=.+|.
T Consensus 409 ~ke~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~e~~----~r~~~~~~~~~~~k~~~del~~~Rk~lWREE~~l~ 480 (1200)
T KOG0964|consen 409 TKEQENILQKEIEDLESELKEKLEEIKELESSINETK----GRMEEFDAENTELKRELDELQDKRKELWREEKKLR 480 (1200)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677888999999999999999988876555333 33345555555555555555555555555544443
No 401
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=60.87 E-value=88 Score=29.68 Aligned_cols=37 Identities=22% Similarity=0.339 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcc
Q 028596 91 KERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLK 127 (207)
Q Consensus 91 ~~kL~kE~~sLa~TVKkL~RDvaKLE~FKk~LmqSLq 127 (207)
..+|..|-..|...++.|...+..+|.=...++.+|-
T Consensus 68 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~iP 104 (425)
T PRK05431 68 AEALIAEVKELKEEIKALEAELDELEAELEELLLRIP 104 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3445566666666666666666666666666666654
No 402
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=60.82 E-value=1.6e+02 Score=31.91 Aligned_cols=76 Identities=20% Similarity=0.292 Sum_probs=33.9
Q ss_pred hCCCCchhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 21 VLPSDPFEQLDVARKITSIAISTRVSDLESEHSALRSQLAEKDSRI-------AELQSQIESIYSSLSDKLGQAQADKER 93 (207)
Q Consensus 21 vLP~DP~EQLdlArkIts~A~atRVs~LEsE~~~LR~~LaEKd~~i-------~eLq~rvs~Le~~L~~rL~~a~ee~~k 93 (207)
.||.+-|-|..-=+ ++-+-++.+||.|+..++.++.+-.+.. ..|.++...++..|+ ....+...
T Consensus 430 yisee~y~~~e~e~----~~~~~~ieele~el~~~~~~l~~~~e~~~~~~~~~~~l~~~~~~~k~~L~----~~~~el~~ 501 (1041)
T KOG0243|consen 430 YISEERYTQEEKEK----KEMAEQIEELEEELENLEKQLKDLTELYMNQLEIKELLKEEKEKLKSKLQ----NKNKELES 501 (1041)
T ss_pred EechHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH----HHHHHHHH
Confidence 35666665553222 1223344444444444444444333332 355555555555555 44444444
Q ss_pred HHHHHHHHHHH
Q 028596 94 LSKENEALTNT 104 (207)
Q Consensus 94 L~kE~~sLa~T 104 (207)
+.+|...+..+
T Consensus 502 ~~ee~~~~~~~ 512 (1041)
T KOG0243|consen 502 LKEELQQAKAT 512 (1041)
T ss_pred HHHHHHHHHHH
Confidence 44444444444
No 403
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=60.79 E-value=1.2e+02 Score=26.80 Aligned_cols=27 Identities=26% Similarity=0.459 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 49 ESEHSALRSQLAEKDSRIAELQSQIES 75 (207)
Q Consensus 49 EsE~~~LR~~LaEKd~~i~eLq~rvs~ 75 (207)
+-|..+||.+|++=+..+...++..+.
T Consensus 95 dwEevrLkrELa~Le~~l~~~~~~~~~ 121 (195)
T PF12761_consen 95 DWEEVRLKRELAELEEKLSKVEQAAES 121 (195)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 347888999998888888888877765
No 404
>PRK08724 fliD flagellar capping protein; Validated
Probab=60.65 E-value=1.1e+02 Score=31.66 Aligned_cols=55 Identities=18% Similarity=0.253 Sum_probs=24.9
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALT 102 (207)
Q Consensus 41 ~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~~sLa 102 (207)
+.+|...|+.++.+|- ..+..|++|+..+|..|..+....+.-..+|+..-+.|.
T Consensus 615 I~~R~~sL~~~i~~l~-------dqi~~Le~Rle~~E~Ry~~QFtAMD~~msqMnsQ~s~L~ 669 (673)
T PRK08724 615 IRTREKSLREQNYRLN-------DDQVALDRRMESLEKRTHAKFAAMQDATGKMQGQLGGMM 669 (673)
T ss_pred hhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555554443 334455555555555554333333333344444333333
No 405
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=60.61 E-value=81 Score=24.78 Aligned_cols=13 Identities=15% Similarity=0.227 Sum_probs=4.7
Q ss_pred hhhhhHHHHHHHH
Q 028596 44 RVSDLESEHSALR 56 (207)
Q Consensus 44 RVs~LEsE~~~LR 56 (207)
++..++.|+..+.
T Consensus 51 ~l~~~~~el~~~~ 63 (158)
T PF03938_consen 51 ELQAKQKELQKLQ 63 (158)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 406
>PF04871 Uso1_p115_C: Uso1 / p115 like vesicle tethering protein, C terminal region; InterPro: IPR006955 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associate protein (TAP) and Vesicle docking protein. This myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the acidic C-terminal region, which binds to the golgins giantin and GM130. p115 is thought to juxtapose two membranes by binding giantin with one acidic region, and GM130 with another [].; GO: 0008565 protein transporter activity, 0006886 intracellular protein transport, 0005737 cytoplasm, 0016020 membrane
Probab=60.51 E-value=92 Score=25.38 Aligned_cols=72 Identities=18% Similarity=0.225 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 028596 47 DLESEHSALRSQLAE-KDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTL 122 (207)
Q Consensus 47 ~LEsE~~~LR~~LaE-Kd~~i~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDvaKLE~FKk~L 122 (207)
.|+.++...+..-+. .+....-+...++.|..... ....+...|...+......+..+...++.|+..+..|
T Consensus 2 ~~~~e~~~~~~~~a~~~e~e~~~~~~~~~~l~~~~~----~l~~e~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~kl 74 (136)
T PF04871_consen 2 ELKSELEEEKQLAAKILELETKLKSQAESSLEQENK----RLEAEEKELKEAEQAAEAELEELASEVKELEAEKEKL 74 (136)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 407
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=60.41 E-value=1.2e+02 Score=26.83 Aligned_cols=71 Identities=23% Similarity=0.293 Sum_probs=40.7
Q ss_pred CCCChHHHHhhCCCCc--hhhHH-------HHHHHHHHHHHHhhh----hhH---HHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 11 TFDLPEEVLQVLPSDP--FEQLD-------VARKITSIAISTRVS----DLE---SEHSALRSQLAEKDSRIAELQSQIE 74 (207)
Q Consensus 11 ~f~Lp~eilsvLP~DP--~EQLd-------lArkIts~A~atRVs----~LE---sE~~~LR~~LaEKd~~i~eLq~rvs 74 (207)
+|++-+-.|.-||.+. .++++ -.-.+++.-+...|+ ..- .++..|+.+|.+=-..+..+++++.
T Consensus 12 ~FD~~~~~L~~l~~~~~~~~~i~~~~ekLs~~ldvVe~~L~~~I~~~s~~f~~a~~~v~el~~~l~~a~~~~~~~R~~L~ 91 (291)
T PF10475_consen 12 DFDPVRYELEKLPEDELDLEDIEELQEKLSHYLDVVEKKLSREISEKSDSFFQAMSSVQELQDELEEALVICKNLRRNLK 91 (291)
T ss_pred CCCchHHHHHhCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8998888899999983 33332 222222222222221 111 1255666667777777777777777
Q ss_pred HHHHHHH
Q 028596 75 SIYSSLS 81 (207)
Q Consensus 75 ~Le~~L~ 81 (207)
.++..+.
T Consensus 92 ~~~~~~~ 98 (291)
T PF10475_consen 92 SADENLT 98 (291)
T ss_pred HHHHHhH
Confidence 6666665
No 408
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=60.37 E-value=1.7e+02 Score=28.45 Aligned_cols=94 Identities=17% Similarity=0.273 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHH
Q 028596 29 QLDVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS-----------------DKLGQAQADK 91 (207)
Q Consensus 29 QLdlArkIts~A~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~-----------------~rL~~a~ee~ 91 (207)
||.-|--=.=-+-..++..-..-.+..|..+.|+.....+|+-+-..|-.+|- +-+.+..|||
T Consensus 64 qlk~aa~~llq~kirk~~e~~eglr~i~es~~e~q~e~~qL~~qnqkL~nqL~~~~~vf~k~k~~~q~LE~li~~~~EEn 143 (401)
T PF06785_consen 64 QLKTAAGQLLQTKIRKITEKDEGLRKIRESVEERQQESEQLQSQNQKLKNQLFHVREVFMKTKGDIQHLEGLIRHLREEN 143 (401)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHH-------HHHhhhHHHHHHHHHHH
Q 028596 92 ERLSKENEALTNTV-------RKLQRDVSKLEVFRKTL 122 (207)
Q Consensus 92 ~kL~kE~~sLa~TV-------KkL~RDvaKLE~FKk~L 122 (207)
..|+=.-++|.... .+|||+++.--+.+..|
T Consensus 144 ~~lqlqL~~l~~e~~Ekeeesq~LnrELaE~layqq~L 181 (401)
T PF06785_consen 144 QCLQLQLDALQQECGEKEEESQTLNRELAEALAYQQEL 181 (401)
T ss_pred HHHHHhHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHH
No 409
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton]
Probab=60.29 E-value=1.4e+02 Score=30.54 Aligned_cols=16 Identities=31% Similarity=0.524 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 028596 66 IAELQSQIESIYSSLS 81 (207)
Q Consensus 66 i~eLq~rvs~Le~~L~ 81 (207)
|..|+.++..|...+.
T Consensus 243 i~~l~~~l~~l~~~~~ 258 (670)
T KOG0239|consen 243 IQALQQELEELKAELK 258 (670)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444444444
No 410
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=60.28 E-value=1.1e+02 Score=28.39 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 028596 52 HSALRSQLAEKDSRIAELQSQIE 74 (207)
Q Consensus 52 ~~~LR~~LaEKd~~i~eLq~rvs 74 (207)
|..|+.+|.|.++.++++++.+.
T Consensus 114 vd~Lkd~lee~eE~~~~~~re~~ 136 (302)
T PF09738_consen 114 VDLLKDKLEELEETLAQLQREYR 136 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555554443
No 411
>PF06637 PV-1: PV-1 protein (PLVAP); InterPro: IPR009538 This family consists of several PV-1 (PLVAP) proteins, which seem to be specific to mammals. PV-1 is a novel protein component of the endothelial fenestral and stomatal diaphragms []. The function of this family is unknown.
Probab=60.09 E-value=1.8e+02 Score=28.66 Aligned_cols=75 Identities=24% Similarity=0.295 Sum_probs=36.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHhhhH
Q 028596 45 VSDLESEHSALRSQLAEKDSRIAELQSQIESIY--------SSLSDKLGQAQADKERLSKENE----ALTNTVRKLQRDV 112 (207)
Q Consensus 45 Vs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le--------~~L~~rL~~a~ee~~kL~kE~~----sLa~TVKkL~RDv 112 (207)
+.+||.| ..||.....|+..-.+-+.|...|. .+|-.| ...+.+...|.+|-. .|++.-..+.=+-
T Consensus 306 rQKle~e-~~l~a~qeakek~~KEAqareaklqaec~rQ~qlaLEEK-aaLrkerd~L~keLeekkreleql~~q~~v~~ 383 (442)
T PF06637_consen 306 RQKLEAE-QGLQASQEAKEKAGKEAQAREAKLQAECARQTQLALEEK-AALRKERDSLAKELEEKKRELEQLKMQLAVKT 383 (442)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3445554 3455555555555555555555442 222233 233344444444444 4444444444555
Q ss_pred HHHHHHHHH
Q 028596 113 SKLEVFRKT 121 (207)
Q Consensus 113 aKLE~FKk~ 121 (207)
+-|++--|+
T Consensus 384 saLdtCika 392 (442)
T PF06637_consen 384 SALDTCIKA 392 (442)
T ss_pred hHHHHHHHh
Confidence 567766555
No 412
>PRK06664 fliD flagellar hook-associated protein FliD; Validated
Probab=60.05 E-value=90 Score=31.73 Aligned_cols=59 Identities=19% Similarity=0.263 Sum_probs=30.0
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVR 106 (207)
Q Consensus 41 ~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~~sLa~TVK 106 (207)
+..|...|+.++.++. ..|.++++|+..+|..|..+....+.-..+|+..-+.|.+..+
T Consensus 598 i~~r~~~l~~~i~~l~-------~~i~~~e~rl~~~e~rl~~QFtaME~~msqmnsqss~L~~~~~ 656 (661)
T PRK06664 598 IYNKVKGLDERIADNN-------KKIEEYEKKLESKERKLKGKYLTMDQTVKKMKEQSNYLKNFNK 656 (661)
T ss_pred eehHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455555555555444 4444555555555555544444444444555555555555544
No 413
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=59.92 E-value=1.7e+02 Score=28.25 Aligned_cols=88 Identities=23% Similarity=0.232 Sum_probs=47.5
Q ss_pred HHHHhhhhhHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHH---HHHHHHH----HHHHHHHHHH-HH
Q 028596 40 AISTRVSDLESEHSALRSQLA-----------EKDSRIAELQSQIESIYSSLS---DKLGQAQ----ADKERLSKEN-EA 100 (207)
Q Consensus 40 A~atRVs~LEsE~~~LR~~La-----------EKd~~i~eLq~rvs~Le~~L~---~rL~~a~----ee~~kL~kE~-~s 100 (207)
.+......|+.++.+|+.++. |-.-...-|+++++.+..-.+ ..|++-+ ++.+=+..|| ..
T Consensus 223 eik~~~~~L~~~~e~Lk~~~~~e~~~~~~~LqEEr~R~erLEeqlNd~~elHq~Ei~~LKqeLa~~EEK~~Yqs~eRaRd 302 (395)
T PF10267_consen 223 EIKESQSRLEESIEKLKEQYQREYQFILEALQEERYRYERLEEQLNDLTELHQNEIYNLKQELASMEEKMAYQSYERARD 302 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhH
Confidence 567777888888888887544 222333334444444433333 3333332 2222233333 34
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhcccc
Q 028596 101 LTNTVRKLQRDVSKLEVFRKTLVQSLKDD 129 (207)
Q Consensus 101 La~TVKkL~RDvaKLE~FKk~LmqSLq~D 129 (207)
+...+...+--|+||| ..++.|-.|-+
T Consensus 303 i~E~~Es~qtRisklE--~~~~Qq~~q~e 329 (395)
T PF10267_consen 303 IWEVMESCQTRISKLE--QQQQQQVVQLE 329 (395)
T ss_pred HHHHHHHHHHHHHHHH--HHHhhhhhhhc
Confidence 5556677777788888 66666655543
No 414
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=59.89 E-value=1e+02 Score=25.80 Aligned_cols=105 Identities=17% Similarity=0.227 Sum_probs=47.9
Q ss_pred hHHHHhhCCCCchhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHH
Q 028596 15 PEEVLQVLPSDPFEQLDVARKITSIAISTRVSDLESEHSALRSQLAEKDSRI------------AELQSQIESIYSSLSD 82 (207)
Q Consensus 15 p~eilsvLP~DP~EQLdlArkIts~A~atRVs~LEsE~~~LR~~LaEKd~~i------------~eLq~rvs~Le~~L~~ 82 (207)
|..+|--.=.|--++|.=+++-+..+++.+ ..||.++..+.....+-.... ...-.+...++..+
T Consensus 24 P~~~l~q~ird~e~~l~~a~~~~a~~~a~~-~~le~~~~~~~~~~~~~~~~A~~Al~~g~edLAr~al~~k~~~e~~~-- 100 (221)
T PF04012_consen 24 PEKMLEQAIRDMEEQLRKARQALARVMANQ-KRLERKLDEAEEEAEKWEKQAELALAAGREDLAREALQRKADLEEQA-- 100 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH--
Confidence 555555555555666666665554444433 345555555555554333222 11111222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Q 028596 83 KLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQ 124 (207)
Q Consensus 83 rL~~a~ee~~kL~kE~~sLa~TVKkL~RDvaKLE~FKk~Lmq 124 (207)
....+....+...-..|..++.+|...+..+++=+..|+.
T Consensus 101 --~~l~~~~~~~~~~~~~l~~~l~~l~~kl~e~k~k~~~l~a 140 (221)
T PF04012_consen 101 --ERLEQQLDQAEAQVEKLKEQLEELEAKLEELKSKREELKA 140 (221)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2333333444444445555555555555555554444443
No 415
>KOG0972 consensus Huntingtin interacting protein 1 (Hip1) interactor Hippi [Signal transduction mechanisms]
Probab=59.88 E-value=44 Score=31.96 Aligned_cols=60 Identities=20% Similarity=0.351 Sum_probs=41.0
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Q 028596 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENE 99 (207)
Q Consensus 40 A~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~---~rL~~a~ee~~kL~kE~~ 99 (207)
-|++|-..|-.+...|-++..+-.....++++++.++..-+. .-|.+..++++++..|-.
T Consensus 263 kI~SREK~lNnqL~~l~q~fr~a~~~lse~~e~y~q~~~gv~~rT~~L~eVm~e~E~~KqemE 325 (384)
T KOG0972|consen 263 KIASREKSLNNQLASLMQKFRRATDTLSELREKYKQASVGVSSRTETLDEVMDEIEQLKQEME 325 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777777777777777777777777777777777666555 556666666666665543
No 416
>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]
Probab=59.84 E-value=54 Score=31.52 Aligned_cols=31 Identities=26% Similarity=0.434 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 028596 87 AQADKERLSKENEALTNTVRKLQRDVSKLEV 117 (207)
Q Consensus 87 a~ee~~kL~kE~~sLa~TVKkL~RDvaKLE~ 117 (207)
-.++..||..++..|..-+-+++|-.++.+.
T Consensus 375 h~eEk~kle~~rr~Leee~~~f~~rk~~~~~ 405 (406)
T KOG3859|consen 375 HQEEKKKLEEKRKQLEEEVNAFQRRKTAAEL 405 (406)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3577888999999999988888888877654
No 417
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=59.80 E-value=79 Score=24.40 Aligned_cols=44 Identities=20% Similarity=0.358 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 65 RIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKL 108 (207)
Q Consensus 65 ~i~eLq~rvs~Le~~L~---~rL~~a~ee~~kL~kE~~sLa~TVKkL 108 (207)
.|.+|.++-.+|..+.+ ..-.....++++|..|-..-...++.|
T Consensus 26 EieELKEknn~l~~e~q~~q~~reaL~~eneqlk~e~~~WQerlrsL 72 (79)
T COG3074 26 EIEELKEKNNSLSQEVQNAQHQREALERENEQLKEEQNGWQERLRAL 72 (79)
T ss_pred HHHHHHHHhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555554 111123345555555555555555444
No 418
>PF11740 KfrA_N: Plasmid replication region DNA-binding N-term; InterPro: IPR021104 The KfrA family of protiens are encoded on plasmids, generally in or near gene clusters invloved in stable inheritance functions. These proteins are thought to form an all-helical structure, consisting of an N-terminal helix-turn-helix DNA binding domain and an extended coiled-coil tail. The best-characterised KfrA protein, encoded on the broad host-range Plasmid RK2, is a site-specific DNA-binding protein whose operator overlaps its own promoter. The DNA-binding domain is essential for function, while the coiled-coil domain is probably responsible for formation of multimers, and may provide an example of a bridge to host structures required for plasmid partitioning []. This entry represents the N-terminal DNA-binding domain.
Probab=59.71 E-value=73 Score=23.99 Aligned_cols=35 Identities=26% Similarity=0.429 Sum_probs=14.1
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 37 TSIAISTRVSDLESEHSALRSQLAEKDSRIAELQS 71 (207)
Q Consensus 37 ts~A~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~ 71 (207)
....+......++.+...+...+.+-...+..|+.
T Consensus 82 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 116 (120)
T PF11740_consen 82 AEEELEAARAELEQERAAAEAELAEAEAQAEELEA 116 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444444444444444444333
No 419
>PRK10807 paraquat-inducible protein B; Provisional
Probab=59.52 E-value=1.9e+02 Score=28.63 Aligned_cols=100 Identities=16% Similarity=0.268 Sum_probs=48.2
Q ss_pred hhCCCCchhhHHHHHHHHHHHHHHhhhhh--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHH
Q 028596 20 QVLPSDPFEQLDVARKITSIAISTRVSDL--ESEHSALRSQLAEKDSRIAELQSQIESIYSSLS--------DKLGQAQA 89 (207)
Q Consensus 20 svLP~DP~EQLdlArkIts~A~atRVs~L--EsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~--------~rL~~a~e 89 (207)
-+||+.|=.==+|..+|. ++..|+.+| |.=+..|..-|.+=++.+.+++..+..++..+. ..|..+.+
T Consensus 406 pvIPt~ps~l~~l~~~~~--~il~kin~lple~i~~~l~~tL~~~~~tl~~l~~~l~~l~~ll~~~~~~~Lp~~L~~TL~ 483 (547)
T PRK10807 406 PIIPTVSGGLAQIQQKLM--EALDKINNLPLNPMIEQATSTLSESQRTMRELQTTLDSLNKITSSQSMQQLPADMQKTLR 483 (547)
T ss_pred ceeecCCCCHHHHHHHHH--HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHH
Confidence 578887753222233322 334444444 333455566666666666666655544443222 33344444
Q ss_pred HHHHHHHH-------HHHHHHHHHHHhhhHHHHHHHHHH
Q 028596 90 DKERLSKE-------NEALTNTVRKLQRDVSKLEVFRKT 121 (207)
Q Consensus 90 e~~kL~kE-------~~sLa~TVKkL~RDvaKLE~FKk~ 121 (207)
+..++..+ ...|.+|++.|+|=+..|..+-++
T Consensus 484 ~l~~~l~~~~~~s~~~~~l~~tl~~l~~~~r~lr~l~~~ 522 (547)
T PRK10807 484 ELNRSMQGFQPGSPAYNKMVADMQRLDQVLRELQPVLKT 522 (547)
T ss_pred HHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444443 334455555555555555444333
No 420
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=59.49 E-value=33 Score=26.99 Aligned_cols=41 Identities=24% Similarity=0.397 Sum_probs=0.0
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (207)
Q Consensus 41 ~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~ 81 (207)
+..|+..|+..+..|...+.++.+.+..++..+..+....+
T Consensus 99 l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~ 139 (140)
T PRK03947 99 LDKRKEELEKALEKLEEALQKLASRIAQLAQELQQLQQEAA 139 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 421
>PF15272 BBP1_C: Spindle pole body component BBP1, C-terminal
Probab=59.43 E-value=75 Score=28.03 Aligned_cols=47 Identities=23% Similarity=0.296 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028596 63 DSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQ 109 (207)
Q Consensus 63 d~~i~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~~sLa~TVKkL~ 109 (207)
.....+|+.+++.|+.+|.++...+...+..|.++...+.-+.+.|.
T Consensus 81 ~~~~~~l~~~i~~le~~lvd~~~~kd~~i~~~~~~l~~~~~r~~el~ 127 (196)
T PF15272_consen 81 SKQSEDLQSRISNLEKQLVDQMIEKDREIRTLQDELLSLELRNKELQ 127 (196)
T ss_pred hHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 45557788999999999988888889999999999999999888887
No 422
>PRK14160 heat shock protein GrpE; Provisional
Probab=59.40 E-value=1.3e+02 Score=26.67 Aligned_cols=39 Identities=10% Similarity=0.328 Sum_probs=31.1
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 43 TRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (207)
Q Consensus 43 tRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~ 81 (207)
..+..|+.++..|.+++.+....+.+|++++-.+.+.+.
T Consensus 54 ~~~~~l~~e~~~l~~~l~~l~~e~~elkd~~lR~~Aefe 92 (211)
T PRK14160 54 VKIEELKDENNKLKEENKKLENELEALKDRLLRTVAEYD 92 (211)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677888888888888888888888888888877777
No 423
>KOG2629 consensus Peroxisomal membrane anchor protein (peroxin) [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=59.32 E-value=99 Score=29.08 Aligned_cols=65 Identities=25% Similarity=0.429 Sum_probs=39.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 028596 46 SDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEV 117 (207)
Q Consensus 46 s~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDvaKLE~ 117 (207)
.+||++...|-.+..+=+..+..|++.+..+...+. .-+.+|....+.|.++.-.|.|++.|||.
T Consensus 118 ~k~e~~k~~Ld~~~~~~~~~~~~l~~~va~v~q~~~-------~qq~Els~~L~~l~~~~~~~s~~~~k~es 182 (300)
T KOG2629|consen 118 DKLEADKRQLDDQFDKAAKSLNALMDEVAQVSQLLA-------TQQSELSRALASLKNTLVQLSRNIEKLES 182 (300)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 356666666666655555555555555554444332 22237777777777776677777777765
No 424
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=59.21 E-value=1.3e+02 Score=26.65 Aligned_cols=11 Identities=36% Similarity=0.425 Sum_probs=7.5
Q ss_pred CCchhhHHHHH
Q 028596 24 SDPFEQLDVAR 34 (207)
Q Consensus 24 ~DP~EQLdlAr 34 (207)
.||..+|+-++
T Consensus 23 EDp~~~l~Q~i 33 (225)
T COG1842 23 EDPEKMLEQAI 33 (225)
T ss_pred cCHHHHHHHHH
Confidence 47777777665
No 425
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=59.16 E-value=47 Score=25.99 Aligned_cols=26 Identities=19% Similarity=0.433 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028596 86 QAQADKERLSKENEALTNTVRKLQRD 111 (207)
Q Consensus 86 ~a~ee~~kL~kE~~sLa~TVKkL~RD 111 (207)
.+.+++.+|.++...+.+.+|+|.++
T Consensus 91 ~~~~~~~~l~~~~~~~~~~~k~lk~E 116 (118)
T PF13815_consen 91 ELQQEIEKLKQKLKKQKEEIKKLKKE 116 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55555555555555555555555443
No 426
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=59.04 E-value=1.3e+02 Score=26.73 Aligned_cols=52 Identities=21% Similarity=0.298 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Q 028596 52 HSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTN 103 (207)
Q Consensus 52 ~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~---~rL~~a~ee~~kL~kE~~sLa~ 103 (207)
+++||..=+||-..+-+--.-+....+.|| .-++...+.|.+|++||..|-.
T Consensus 22 ~~rLR~~E~ek~~~m~~~g~lm~evNrrlQ~hl~EIR~LKe~NqkLqedNqELRd 76 (195)
T PF10226_consen 22 VRRLRRAEAEKMSLMVEHGRLMKEVNRRLQQHLNEIRGLKEVNQKLQEDNQELRD 76 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555444544444333333333333333 3334677788888888887753
No 427
>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7. The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.
Probab=58.82 E-value=86 Score=24.51 Aligned_cols=23 Identities=17% Similarity=0.239 Sum_probs=12.3
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHH
Q 028596 37 TSIAISTRVSDLESEHSALRSQL 59 (207)
Q Consensus 37 ts~A~atRVs~LEsE~~~LR~~L 59 (207)
+..-+..++.+||.++..+..++
T Consensus 9 ~~~~L~~~~~~le~~i~~~~~~~ 31 (171)
T PF03357_consen 9 TIRRLEKQIKRLEKKIKKLEKKA 31 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555566666655555444
No 428
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=58.71 E-value=1.1e+02 Score=25.87 Aligned_cols=43 Identities=23% Similarity=0.407 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 61 EKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTN 103 (207)
Q Consensus 61 EKd~~i~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~~sLa~ 103 (207)
++...+..+++|+..-+..|..+..........|.+....|..
T Consensus 75 ~~~~el~~~E~rl~~rE~~L~~~~~~L~~~e~~l~~~~~~l~~ 117 (201)
T PF12072_consen 75 ERRKELQRLEKRLQQREEQLDRRLEQLEKREEELEKKEEELEQ 117 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555555543333333333344444333333
No 429
>PRK11519 tyrosine kinase; Provisional
Probab=58.65 E-value=75 Score=31.85 Aligned_cols=15 Identities=7% Similarity=0.031 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHH
Q 028596 66 IAELQSQIESIYSSL 80 (207)
Q Consensus 66 i~eLq~rvs~Le~~L 80 (207)
+..|+.+...|+.++
T Consensus 341 v~~l~~~~~~L~~~~ 355 (719)
T PRK11519 341 YRTLLEKRKALEDEK 355 (719)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444443
No 430
>PRK10869 recombination and repair protein; Provisional
Probab=58.59 E-value=65 Score=31.55 Aligned_cols=47 Identities=13% Similarity=0.231 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH-----HHHHHHHHHhhccc
Q 028596 82 DKLGQAQADKERLSKENEALTNTVRKLQRDVSK-----LEVFRKTLVQSLKD 128 (207)
Q Consensus 82 ~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDvaK-----LE~FKk~LmqSLq~ 128 (207)
..|....+...+|.++.+.+...++++...+++ .+.|.+.+..-|++
T Consensus 334 ~~L~~~e~~l~~Le~e~~~l~~~l~~~A~~LS~~R~~aA~~l~~~v~~~L~~ 385 (553)
T PRK10869 334 QQLDDQEDDLETLALAVEKHHQQALETAQKLHQSRQRYAKELAQLITESMHE 385 (553)
T ss_pred HHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566777888888888888888877773 56777777665554
No 431
>PRK09737 EcoKI restriction-modification system protein HsdS; Provisional
Probab=58.26 E-value=26 Score=31.43 Aligned_cols=40 Identities=10% Similarity=0.322 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHH---HHHHHH-HhhhHHHHHHHHHHHHhhcc
Q 028596 88 QADKERLSKENEAL---TNTVRK-LQRDVSKLEVFRKTLVQSLK 127 (207)
Q Consensus 88 ~ee~~kL~kE~~sL---a~TVKk-L~RDvaKLE~FKk~LmqSLq 127 (207)
.++|.+..+.-+.+ .+.+.+ +++.+++|+.+|+.|||.+=
T Consensus 372 l~EQ~kI~~~l~~l~~~~d~i~~~~~~~l~~L~~lKqslLqk~f 415 (461)
T PRK09737 372 LEEQAEIVRRVEQLFAYADTIEKQVNNALARVNNLTQSILAKAF 415 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35566655544444 444544 57789999999999999653
No 432
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=58.21 E-value=8.9 Score=27.29 Aligned_cols=28 Identities=39% Similarity=0.544 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHH
Q 028596 33 ARKITSIAISTRVSDLESEHSALRSQLA 60 (207)
Q Consensus 33 ArkIts~A~atRVs~LEsE~~~LR~~La 60 (207)
+|.....+...|+++||.|-..||.+|.
T Consensus 19 ~R~~d~~~a~~rl~~l~~EN~~Lr~eL~ 46 (52)
T PF12808_consen 19 ARSLDRSAARKRLSKLEGENRLLRAELE 46 (52)
T ss_pred hccCCchhHHHHHHHHHHHHHHHHHHHH
Confidence 4555667889999999999999999886
No 433
>COG2919 Septum formation initiator [Cell division and chromosome partitioning]
Probab=58.17 E-value=91 Score=24.57 Aligned_cols=40 Identities=25% Similarity=0.309 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Q 028596 86 QAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQS 125 (207)
Q Consensus 86 ~a~ee~~kL~kE~~sLa~TVKkL~RDvaKLE~FKk~LmqS 125 (207)
....++.+|..++..|...|++|+-+.+.++..-|.-...
T Consensus 61 ~~~~e~~~L~~~~~~l~~ei~~L~dg~~~i~e~AR~~l~~ 100 (117)
T COG2919 61 AQQAELEKLSARNTALEAEIKDLKDGRDYIEERARSELGM 100 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHhCC
Confidence 6667778888888888888888888877777777766653
No 434
>KOG2896 consensus UV radiation resistance associated protein [General function prediction only]
Probab=57.85 E-value=1.5e+02 Score=28.83 Aligned_cols=77 Identities=19% Similarity=0.264 Sum_probs=36.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHHHHHH--HHHHHHHH-HHHHHHHHHHHHHHHH
Q 028596 45 VSDLESEHSALRSQLAEKDSRIAELQ----------------SQIESIYSSLS--DKLGQAQA-DKERLSKENEALTNTV 105 (207)
Q Consensus 45 Vs~LEsE~~~LR~~LaEKd~~i~eLq----------------~rvs~Le~~L~--~rL~~a~e-e~~kL~kE~~sLa~TV 105 (207)
+..+-+++..+|.+..+-...+..|+ ++.+++..... .|+++.++ .-.+..+....|.-.+
T Consensus 82 ~q~~~~q~~~~~~~~~~v~~ek~rl~~~~i~~~iL~~~~~l~~~~Ealsk~~~~~~k~~~kL~~kr~q~~~~q~~l~k~~ 161 (377)
T KOG2896|consen 82 EQCLSAQVQSMRVEMKEVSEEKLRLQIECIQLKILVLESNLQRQIEALSKKRAHLEKTKQKLEDKRQQFNASQVKLQKQL 161 (377)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 33444555666666655444444443 33333333322 44444444 2233333444444444
Q ss_pred H----HHhhhHHHHHHHHHH
Q 028596 106 R----KLQRDVSKLEVFRKT 121 (207)
Q Consensus 106 K----kL~RDvaKLE~FKk~ 121 (207)
| -.++-+++.|.|-.+
T Consensus 162 k~l~e~~~~l~a~re~fL~~ 181 (377)
T KOG2896|consen 162 KSLIELRNELVAKRELFLEQ 181 (377)
T ss_pred HHHHHHHHHHHHHHHhhHhH
Confidence 4 345667777777544
No 435
>PF11570 E2R135: Coiled-coil receptor-binding R-domain of colicin E2; InterPro: IPR024566 Bacteriocins are protein antibiotics that kill bacteria closely related to the producing species. Colicins are a subgroup of bacteriocins that are produced by and target Escherichia coli. The lethal action of most colicins is exerted either by formation of a pore in the cytoplasmic membrane of the target cell, or by an enzymatic nuclease digestion mechanism. Most colicins are able to translocate the outer membrane by a two-receptor system, where one receptor is used for the initial binding and the second for translocation. The initial binding is to cell surface receptors such as the porins OmpF, FepA, BtuB, Cir and FhuA. The presence of specific periplasmic proteins, such as TolA, TolB, TolC, or TonB, are required for translocation across the membrane []. Colicins are composed of domains with distinct functional roles. In general they contain a central R (receptor) domain that mediates receptor binding, an N-terminal T (translocation) domain that mediates translocation of the protein from the outer membrane receptor to the colicin's target within the cell, and a C-terminal C (catalytic) domain that performs the catalytic cleavage []. This entry represents the central R domain found in colicin-E2 and other colicins.; PDB: 2YSU_B 1UJW_B 2B5U_C 1JCH_A.
Probab=57.84 E-value=72 Score=26.93 Aligned_cols=54 Identities=22% Similarity=0.300 Sum_probs=43.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 45 VSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKEN 98 (207)
Q Consensus 45 Vs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~ 98 (207)
|-.+|.-..+-|++|..-+..|..++.|.++.+..|.+|-....+-..++.++.
T Consensus 3 ve~a~rny~~a~aeL~~a~~~I~~~q~r~a~a~~~~~~r~seldqA~~~~~eae 56 (136)
T PF11570_consen 3 VEVAERNYEAARAELDQADEDIATLQERQASAEQALNGRRSELDQANKKVKEAE 56 (136)
T ss_dssp HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 344566677889999999999999999999999999877777777777776643
No 436
>PF14739 DUF4472: Domain of unknown function (DUF4472)
Probab=57.53 E-value=1e+02 Score=24.91 Aligned_cols=61 Identities=25% Similarity=0.371 Sum_probs=32.6
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028596 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRD 111 (207)
Q Consensus 40 A~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~~sLa~TVKkL~RD 111 (207)
.++++|-.||+.+-.|-.....+...+.++. .++..+.++..+|..|--.|-.....+..+
T Consensus 32 ELk~~vL~lE~rvleLel~~~~~~~~~~~~~-----------~~~~~~~~~~~~l~~e~~~l~~~~~a~~k~ 92 (108)
T PF14739_consen 32 ELKNEVLRLENRVLELELHGDKAAPQIADLR-----------HRLAEAQEDRQELQEEYVSLKKNYQALPKA 92 (108)
T ss_pred HHHHHHHHHHHHHHHHHhhcchhhHHHhhHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455555555555444444443333333333 555666677777777766665555555444
No 437
>COG3334 Uncharacterized conserved protein [Function unknown]
Probab=57.53 E-value=1.4e+02 Score=26.40 Aligned_cols=84 Identities=19% Similarity=0.266 Sum_probs=50.5
Q ss_pred hhCCCCch-hhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
Q 028596 20 QVLPSDPF-EQLDVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSK-- 96 (207)
Q Consensus 20 svLP~DP~-EQLdlArkIts~A~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~~rL~~a~ee~~kL~k-- 96 (207)
.-+|..+- .|....+.-+..+=+.+.+. ..++.++.+|-+.|.++.+++..||.. .++++..+++......
T Consensus 44 ~~~~~~~~~~~~e~~k~~~~i~da~~dq~-----~~~q~e~~~~lk~~a~~~E~lk~lE~~-kae~k~~~e~re~~l~~~ 117 (192)
T COG3334 44 AELAEKKAAAQSEIEKFCANIADAAADQL-----YALQKELLEKLKDLAEVNERLKALEKK-KAELKDLEEEREGILRSK 117 (192)
T ss_pred hhcccccchhhhHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 44444443 66666665555443333322 666777777778888888888877776 6666677777766663
Q ss_pred --HHHHHHHHHHHHh
Q 028596 97 --ENEALTNTVRKLQ 109 (207)
Q Consensus 97 --E~~sLa~TVKkL~ 109 (207)
|.+.|..+.++.-
T Consensus 118 qae~~klv~iY~~Mk 132 (192)
T COG3334 118 QAEDGKLVKIYSKMK 132 (192)
T ss_pred HhhhhHHHHHHHcCC
Confidence 3333555555443
No 438
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=57.47 E-value=2.5e+02 Score=29.42 Aligned_cols=25 Identities=20% Similarity=0.395 Sum_probs=16.8
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHh
Q 028596 100 ALTNTVRKLQRDVSKLEVFRKTLVQ 124 (207)
Q Consensus 100 sLa~TVKkL~RDvaKLE~FKk~Lmq 124 (207)
.|....+...-.|..|+-+.+.+++
T Consensus 238 ele~i~~~~~dqlqel~~l~~a~~q 262 (716)
T KOG4593|consen 238 ELEAINKNMKDQLQELEELERALSQ 262 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555667778888888776
No 439
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=57.43 E-value=68 Score=22.88 Aligned_cols=68 Identities=21% Similarity=0.339 Sum_probs=31.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 028596 48 LESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKL-GQAQADKERLSKENEALTNTVRKLQRDVSKL 115 (207)
Q Consensus 48 LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~~rL-~~a~ee~~kL~kE~~sLa~TVKkL~RDvaKL 115 (207)
.+.+++..++.+.+....+..|+..+..+...+.+.. ............-...|...++.+...+..+
T Consensus 3 a~~~l~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~i~~~~~~~~~~ 71 (123)
T PF02050_consen 3 AEQELAEAQQELQEAEEQLEQLQQERQEYQEQLSESQQGVSVAQLRNYQRYISALEQAIQQQQQELERL 71 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----SGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666666666666666644444111 1122333334444444444444444444443
No 440
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=57.42 E-value=57 Score=24.86 Aligned_cols=23 Identities=22% Similarity=0.384 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHH
Q 028596 93 RLSKENEALTNTVRKLQRDVSKL 115 (207)
Q Consensus 93 kL~kE~~sLa~TVKkL~RDvaKL 115 (207)
.|.+.-+.+..++..|+..|+..
T Consensus 39 ~l~~klDa~~~~l~~l~~~V~~I 61 (75)
T PF05531_consen 39 ELNKKLDAQSAQLTTLNTKVNEI 61 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555544443
No 441
>COG5570 Uncharacterized small protein [Function unknown]
Probab=57.29 E-value=24 Score=25.81 Aligned_cols=18 Identities=22% Similarity=0.370 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 028596 64 SRIAELQSQIESIYSSLS 81 (207)
Q Consensus 64 ~~i~eLq~rvs~Le~~L~ 81 (207)
.++++|++|...||++++
T Consensus 5 shl~eL~kkHg~le~ei~ 22 (57)
T COG5570 5 SHLAELEKKHGNLEREIQ 22 (57)
T ss_pred HHHHHHHHhhchHHHHHH
Confidence 466777777777777777
No 442
>PF08606 Prp19: Prp19/Pso4-like; InterPro: IPR013915 This region is found specifically in PRP19-like protein. The region represented by this protein covers the sequence implicated in self-interaction and a coiled-coiled motif []. PRP19-like proteins form an oligomer that is necessary for spliceosome assembly [].
Probab=57.08 E-value=58 Score=24.63 Aligned_cols=43 Identities=23% Similarity=0.211 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 66 IAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKL 108 (207)
Q Consensus 66 i~eLq~rvs~Le~~L~---~rL~~a~ee~~kL~kE~~sLa~TVKkL 108 (207)
..+|++++.....+|. =.--.|-.-+++|.+||+.+...+.+|
T Consensus 24 ~f~LRk~l~~~rqELs~aLYq~DAA~RViArl~kErd~ar~~l~~l 69 (70)
T PF08606_consen 24 NFTLRKQLDQTRQELSHALYQHDAACRVIARLLKERDEAREALAEL 69 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHhc
Confidence 3555666666666665 122345556789999999988777655
No 443
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=57.08 E-value=2.2e+02 Score=28.68 Aligned_cols=81 Identities=20% Similarity=0.279 Sum_probs=0.0
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH---------------HH
Q 028596 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEA---------------LT 102 (207)
Q Consensus 41 ~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~---~rL~~a~ee~~kL~kE~~s---------------La 102 (207)
|..|+..|=.+......+..-=......|+.|+...|.... ..|+.+.+.+..|++|... |+
T Consensus 418 Y~~RI~eLt~qlQ~adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr~NYE~QLs~MSEHLa 497 (518)
T PF10212_consen 418 YMSRIEELTSQLQHADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDELETTRRNYEEQLSMMSEHLA 497 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q ss_pred HHHHHHhhhHHHHHHHHHH
Q 028596 103 NTVRKLQRDVSKLEVFRKT 121 (207)
Q Consensus 103 ~TVKkL~RDvaKLE~FKk~ 121 (207)
+--.+|..+=.-.++||..
T Consensus 498 smNeqL~~Q~eeI~~LK~~ 516 (518)
T PF10212_consen 498 SMNEQLAKQREEIQTLKLA 516 (518)
T ss_pred HHHHHHHHHHHHHHHHhhc
No 444
>PF10359 Fmp27_WPPW: RNA pol II promoter Fmp27 protein domain; InterPro: IPR019449 The function of the FMP27 protein is not known. FMP27 is the product of a nuclear encoded gene but it is detected in highly purified mitochondria in high-throughput studies []. This entry represents a domain within FMP27 that contains characteristic HQR and WPPW sequence motifs.
Probab=57.07 E-value=57 Score=31.30 Aligned_cols=42 Identities=21% Similarity=0.306 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccccC
Q 028596 90 DKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLKDDED 131 (207)
Q Consensus 90 e~~kL~kE~~sLa~TVKkL~RDvaKLE~FKk~LmqSLq~D~~ 131 (207)
....+..+...|...++.|.+-+..|+...+.|-.+......
T Consensus 194 ~~~~~~~~~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~~~~ 235 (475)
T PF10359_consen 194 DDPELKSDIEELERHISSLKERIEFLENMLEDLEDSESSSDQ 235 (475)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCC
Confidence 445667888888888999999998888888877766654444
No 445
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=57.04 E-value=1.1e+02 Score=25.26 Aligned_cols=80 Identities=20% Similarity=0.267 Sum_probs=54.3
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 028596 43 TRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTL 122 (207)
Q Consensus 43 tRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDvaKLE~FKk~L 122 (207)
..+..+..++..+-.++.+=...+.+|+.++...+ .+-....+.+++|..|...|......+...+.-.+.+- .+
T Consensus 7 ~~L~~~~~~~~~ll~~~~~~~~~l~~l~~~~~~Vs----~kT~~l~~~ce~Ll~eq~~L~~~ae~I~~~L~yF~~Ld-~i 81 (157)
T PF04136_consen 7 DYLQQYREECDQLLDQTDEILDQLDELQEQYNSVS----EKTNSLHEACEQLLEEQTRLEELAEEISEKLQYFEELD-PI 81 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhHH-HH
Confidence 34455555666665555555555566655555444 44447778899999999999999999998887766654 35
Q ss_pred Hhhcc
Q 028596 123 VQSLK 127 (207)
Q Consensus 123 mqSLq 127 (207)
++.|+
T Consensus 82 tr~Ln 86 (157)
T PF04136_consen 82 TRRLN 86 (157)
T ss_pred HHHHc
Confidence 66665
No 446
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=56.87 E-value=48 Score=24.53 Aligned_cols=26 Identities=23% Similarity=0.270 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028596 86 QAQADKERLSKENEALTNTVRKLQRD 111 (207)
Q Consensus 86 ~a~ee~~kL~kE~~sLa~TVKkL~RD 111 (207)
...+.+.+|..||..|-..+..+..+
T Consensus 11 ~Li~~~~~L~~EN~~Lr~q~~~~~~E 36 (65)
T TIGR02449 11 HLLEYLERLKSENRLLRAQEKTWREE 36 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444333
No 447
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=56.78 E-value=1.1e+02 Score=25.29 Aligned_cols=31 Identities=32% Similarity=0.470 Sum_probs=13.0
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q 028596 50 SEHSALRSQLA-EKDSRIAELQSQIESIYSSL 80 (207)
Q Consensus 50 sE~~~LR~~La-EKd~~i~eLq~rvs~Le~~L 80 (207)
+.+..||..+. -...+++.|+.....|...+
T Consensus 58 a~~~eLr~el~~~~k~~~~~lr~~~e~L~~ei 89 (177)
T PF07798_consen 58 AAIAELRSELQNSRKSEFAELRSENEKLQREI 89 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555554 22233344444444443333
No 448
>PF11500 Cut12: Spindle pole body formation-associated protein; InterPro: IPR021589 This is the central coiled-coil region of cut12 also found in other fungi, barring S. cerevisiae. The full protein has two predicted coiled-coil regions, and one consensus phosphorylation site for p34cdc2 and two for MAP kinase. During Schizosaccharomyces japonicus yFS275 mitosis, the duplicated spindle pole bodies (SPBs) nucleate microtubule arrays that interdigitate to form the mitotic spindle. Cut12 is localised to the SPB throughout the cell cycle, predominantly around the inner face of the interphase SPB, adjacent to the nucleus []. Cut12 associates with Fin1 and is important in this context for the activity of Plo1 [].
Probab=56.73 E-value=18 Score=30.62 Aligned_cols=33 Identities=21% Similarity=0.472 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 49 ESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (207)
Q Consensus 49 EsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~ 81 (207)
..|+.+|..+|-+....+..++.+|+.|-..+.
T Consensus 104 D~Ea~~L~~KLkeEq~kv~~ME~~v~elas~m~ 136 (152)
T PF11500_consen 104 DAEAMRLAEKLKEEQEKVAEMERHVTELASQMA 136 (152)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555555544444
No 449
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=56.73 E-value=2.2e+02 Score=28.61 Aligned_cols=29 Identities=17% Similarity=0.275 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028596 82 DKLGQAQADKERLSKENEALTNTVRKLQR 110 (207)
Q Consensus 82 ~rL~~a~ee~~kL~kE~~sLa~TVKkL~R 110 (207)
+|+.....+...+++...+|...+..|.|
T Consensus 385 ~~l~~le~~l~~~~~~~~~L~~~~~~l~~ 413 (656)
T PRK06975 385 SQFAQLDGKLADAQSAQQALEQQYQDLSR 413 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44444444444445544555554444443
No 450
>PRK11415 hypothetical protein; Provisional
Probab=56.49 E-value=38 Score=24.95 Aligned_cols=58 Identities=17% Similarity=0.234 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H-HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028596 53 SALRSQLAEKDSRIAELQSQIESIYSSLS---D-KLGQAQADKERLSKENEALTNTVRKLQR 110 (207)
Q Consensus 53 ~~LR~~LaEKd~~i~eLq~rvs~Le~~L~---~-rL~~a~ee~~kL~kE~~sLa~TVKkL~R 110 (207)
+.+=.+|...|.++..|.+++..|+.++. . .-.....+...|-++|=.|-+.+-.+-+
T Consensus 6 ~d~I~~Lk~~D~~F~~L~~~h~~Ld~~I~~lE~~~~~~~d~~i~~LKk~KL~LKDeI~~~L~ 67 (74)
T PRK11415 6 RDLISRLKNENPRFMSLFDKHNKLDHEIARKEGSDGRGYNAEVVRMKKQKLQLKDEMLKILQ 67 (74)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhHHHHHHHHH
Confidence 34456778899999999999999999996 1 1112356677788887777666655443
No 451
>PRK06665 flgK flagellar hook-associated protein FlgK; Validated
Probab=56.45 E-value=93 Score=31.08 Aligned_cols=87 Identities=15% Similarity=0.213 Sum_probs=51.1
Q ss_pred HhhCCCCchhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 19 LQVLPSDPFEQLDVARKITSIAISTRVSDLESEHSALRSQLAEK----DSRIAELQSQIESIYSSLSDKLGQAQADKERL 94 (207)
Q Consensus 19 lsvLP~DP~EQLdlArkIts~A~atRVs~LEsE~~~LR~~LaEK----d~~i~eLq~rvs~Le~~L~~rL~~a~ee~~kL 94 (207)
|+.=|+|+-.+-.|.- ...+++.++..+-.++..+|..+.+. =..|..|=+++..|..++. +....-..-+.|
T Consensus 131 ls~~P~~~a~R~~vl~--~A~~La~~~n~~~~~L~~~~~~~~~~i~~~V~~iN~ll~qIa~LN~qI~-~~~~~g~~~ndL 207 (627)
T PRK06665 131 LSNYPEGLAERQVVLE--RAQSLGERIHDRYRSLERIRDMANDEIEITVEEINNILRNIADLNEQIV-KSQAMGDNPNDL 207 (627)
T ss_pred HHhCCCCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhcCCCCchhh
Confidence 5556776665555544 55678888888888777777766533 2445555555665555554 111111223467
Q ss_pred HHHHHHHHHHHHHH
Q 028596 95 SKENEALTNTVRKL 108 (207)
Q Consensus 95 ~kE~~sLa~TVKkL 108 (207)
..+|+.|...+-++
T Consensus 208 lDqRD~ll~eLS~~ 221 (627)
T PRK06665 208 LDRRDLLVDKLSSL 221 (627)
T ss_pred HHHHHHHHHHHHhh
Confidence 77777777666554
No 452
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=56.44 E-value=83 Score=28.06 Aligned_cols=32 Identities=13% Similarity=0.281 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 50 SEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (207)
Q Consensus 50 sE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~ 81 (207)
++|..||..+.+.+..+.+.+.++..+-.++.
T Consensus 32 s~Ie~LK~~i~~~E~~l~~~r~~~~~aK~~Y~ 63 (207)
T PF05546_consen 32 SEIEKLKKSIEELEDELEAARQEVREAKAAYD 63 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34666666666666666666666665555555
No 453
>PF06730 FAM92: FAM92 protein; InterPro: IPR009602 This family consists of several eukaryotic sequences of around 270 residues in length. Members of this family are found in mouse, human and Drosophila melanogaster. The function of this family is unknown.
Probab=56.40 E-value=55 Score=29.31 Aligned_cols=73 Identities=21% Similarity=0.356 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHH--------HHHHHHHHHHHHhhhHHHHHHH
Q 028596 57 SQLAEKDSRIAELQSQIESIYSSLS----------DKLGQAQADKERLSK--------ENEALTNTVRKLQRDVSKLEVF 118 (207)
Q Consensus 57 ~~LaEKd~~i~eLq~rvs~Le~~L~----------~rL~~a~ee~~kL~k--------E~~sLa~TVKkL~RDvaKLE~F 118 (207)
..+..+|....-++++|+..|.-+. .|....++....|.+ |+=+|...++.+...++++..+
T Consensus 4 ~~~~~rd~q~K~i~~~i~~vEkhFg~lC~~~a~ytRKtArLRDk~D~lak~l~~yA~~E~~~l~~~L~~fae~la~vqDY 83 (219)
T PF06730_consen 4 RELRSRDSQTKFIQDRITNVEKHFGELCQLFAAYTRKTARLRDKGDELAKQLQDYANTENPNLKLGLKNFAECLAKVQDY 83 (219)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHhcCCccHhhHHHHHHHHHHHHHHH
Confidence 3355666666666666666665443 233333333334443 4445666899999999999999
Q ss_pred HHHHHhhcccc
Q 028596 119 RKTLVQSLKDD 129 (207)
Q Consensus 119 Kk~LmqSLq~D 129 (207)
+...++.|..-
T Consensus 84 Rqa~v~RlE~K 94 (219)
T PF06730_consen 84 RQAEVERLEAK 94 (219)
T ss_pred HHHHHHHHHHH
Confidence 99998877543
No 454
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=56.35 E-value=1.3e+02 Score=29.59 Aligned_cols=65 Identities=12% Similarity=0.192 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH--HHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 028596 53 SALRSQLAEKDSRIAELQSQIESIYSSLS-DKLGQA--QADKERLSKENEALTNTVRKLQRDVSKLEV 117 (207)
Q Consensus 53 ~~LR~~LaEKd~~i~eLq~rvs~Le~~L~-~rL~~a--~ee~~kL~kE~~sLa~TVKkL~RDvaKLE~ 117 (207)
..++.++.+-+..|..|++++..|+.++. .-+-.. ..+..+|.+|...+...+..+...-..|+.
T Consensus 559 ~~~~~~~~~~e~~i~~le~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~w~~l~~ 626 (638)
T PRK10636 559 QPLRKEIARLEKEMEKLNAQLAQAEEKLGDSELYDQSRKAELTACLQQQASAKSGLEECEMAWLEAQE 626 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555666666666666666664 101000 113455555666665555555555555543
No 455
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=56.32 E-value=2e+02 Score=31.27 Aligned_cols=25 Identities=32% Similarity=0.432 Sum_probs=14.9
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHH
Q 028596 41 ISTRVSDLESEHSALRSQLAEKDSR 65 (207)
Q Consensus 41 ~atRVs~LEsE~~~LR~~LaEKd~~ 65 (207)
++.|+..+|.++..|+..+.+|...
T Consensus 213 ~~~~~~~l~~~~~~Lq~~in~kR~~ 237 (1109)
T PRK10929 213 AKKRSQQLDAYLQALRNQLNSQRQR 237 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666654433
No 456
>PF11262 Tho2: Transcription factor/nuclear export subunit protein 2; InterPro: IPR021418 THO and TREX form a eukaryotic complex which functions in messenger ribonucleoprotein metabolism and plays a role in preventing the transcription-associated genetic instability [],[]. Tho2, along with four other subunits forms THO []. This entry represents a conserved domain found towards the C terminus of these proteins.
Probab=56.25 E-value=60 Score=29.30 Aligned_cols=63 Identities=21% Similarity=0.310 Sum_probs=40.6
Q ss_pred HHHHhhhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 40 AISTRVSDLESEHSA-LRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALT 102 (207)
Q Consensus 40 A~atRVs~LEsE~~~-LR~~LaEKd~~i~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~~sLa 102 (207)
.|...+.+|+.++.. -+.....+.+.+..++..+..|..+++....+...-...|++|++..-
T Consensus 28 ~Y~~ei~~L~~~i~~~~~~~~~~~~k~~~~l~~~i~~L~~E~~~h~~~~~~v~~~L~~~k~~wf 91 (298)
T PF11262_consen 28 LYDEEIERLEKEISQMSRATISKKKKEKERLKNLIDKLPEELKKHQEHVEKVKKRLQEEKDSWF 91 (298)
T ss_pred HHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 344455556666655 444444566777777777777777777555566666667777777766
No 457
>PLN02678 seryl-tRNA synthetase
Probab=56.17 E-value=1.7e+02 Score=28.50 Aligned_cols=40 Identities=13% Similarity=0.255 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccc
Q 028596 89 ADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLKD 128 (207)
Q Consensus 89 ee~~kL~kE~~sLa~TVKkL~RDvaKLE~FKk~LmqSLq~ 128 (207)
++...|..|-..|...++.|..++..++.=...+|.+|-+
T Consensus 71 ~~~~~l~~~~~~Lk~ei~~le~~~~~~~~~l~~~~~~iPN 110 (448)
T PLN02678 71 EDATELIAETKELKKEITEKEAEVQEAKAALDAKLKTIGN 110 (448)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 4555666677777777777777777777777777777654
No 458
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=56.05 E-value=1.6e+02 Score=29.56 Aligned_cols=38 Identities=32% Similarity=0.383 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhc
Q 028596 86 QAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSL 126 (207)
Q Consensus 86 ~a~ee~~kL~kE~~sLa~TVKkL~RDvaKLE~FKk~LmqSL 126 (207)
++.|--++|..|-..|. .+|=+-+.|||.=||-|..-|
T Consensus 187 e~V~lentlEQEqEalv---N~LwKrmdkLe~ekr~Lq~Kl 224 (552)
T KOG2129|consen 187 EAVQLENTLEQEQEALV---NSLWKRMDKLEQEKRYLQKKL 224 (552)
T ss_pred HHHHHhhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHh
Confidence 34444556666666664 467778899999999999988
No 459
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=56.01 E-value=3.8 Score=42.09 Aligned_cols=75 Identities=23% Similarity=0.353 Sum_probs=0.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 028596 45 VSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFR 119 (207)
Q Consensus 45 Vs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~---~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDvaKLE~FK 119 (207)
+..||.++..|+.++.+-.+.+.+|......|+..+. ..|..+......|.+.+.+|..++.-+.+.+.---.-|
T Consensus 182 ~K~lE~qL~El~~klee~er~~~el~~~k~kL~~E~~eL~~qLee~e~~~~~l~r~k~~L~~qLeelk~~leeEtr~k 259 (859)
T PF01576_consen 182 RKQLEAQLNELQAKLEESERQRNELTEQKAKLQSENSELTRQLEEAESQLSQLQREKSSLESQLEELKRQLEEETRAK 259 (859)
T ss_dssp ------------------------------------------------------------------------------
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHhhhh
Confidence 4556666666666666666666666666555555555 44445555555555555555555555555444433333
No 460
>PF05565 Sipho_Gp157: Siphovirus Gp157; InterPro: IPR008840 This family contains both viral and bacterial proteins which are related to the Gp157 protein of the Streptococcus thermophilus SFi bacteriophage. It is thought that bacteria possessing the gene coding for this protein have an increased resistance to the bacteriophage [].
Probab=55.78 E-value=1.2e+02 Score=25.11 Aligned_cols=44 Identities=14% Similarity=0.228 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccc
Q 028596 85 GQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLKD 128 (207)
Q Consensus 85 ~~a~ee~~kL~kE~~sLa~TVKkL~RDvaKLE~FKk~LmqSLq~ 128 (207)
+...-+..-+..|...|...-|...+.+.+|+..-...|+.++-
T Consensus 50 k~~ea~~e~~k~E~krL~~rkk~~e~~~~~Lk~yL~~~m~~~g~ 93 (162)
T PF05565_consen 50 KNLEADIEAIKAEIKRLQERKKSIENRIDRLKEYLLDAMEAAGI 93 (162)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 34455556667777777777777777777777777777776543
No 461
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=55.77 E-value=1.2e+02 Score=32.82 Aligned_cols=31 Identities=23% Similarity=0.357 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 028596 86 QAQADKERLSKENEALTNTVRKLQRDVSKLE 116 (207)
Q Consensus 86 ~a~ee~~kL~kE~~sLa~TVKkL~RDvaKLE 116 (207)
.-.+-+..|.+++..|...+-.-+++++.++
T Consensus 473 ~~~~~~~~l~~~~~~~k~~L~~~~~el~~~~ 503 (1041)
T KOG0243|consen 473 NQLEIKELLKEEKEKLKSKLQNKNKELESLK 503 (1041)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444666666666655555555544433
No 462
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=55.48 E-value=1e+02 Score=24.38 Aligned_cols=81 Identities=21% Similarity=0.325 Sum_probs=33.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 028596 46 SDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTL 122 (207)
Q Consensus 46 s~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~---~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDvaKLE~FKk~L 122 (207)
..|-.+...|-....++...+.+++.++..+-..+. ........+...+ ..+=+......+|...++..|.==..|
T Consensus 37 ~~l~~~n~~lAe~nL~~~~~l~~~r~~l~~~~~~~~~L~~~~~~k~~~~~~l-~~~~s~~~l~~~L~~~~~e~eeeSe~l 115 (150)
T PF07200_consen 37 EELLAENEELAEQNLSLEPELEELRSQLQELYEELKELESEYQEKEQQQDEL-SSNYSPDALLARLQAAASEAEEESEEL 115 (150)
T ss_dssp HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444555555544444433333 2222333333333 333444455556666666655555555
Q ss_pred Hhhcc
Q 028596 123 VQSLK 127 (207)
Q Consensus 123 mqSLq 127 (207)
..++.
T Consensus 116 ae~fl 120 (150)
T PF07200_consen 116 AEEFL 120 (150)
T ss_dssp C-S-S
T ss_pred HHHHh
Confidence 44444
No 463
>KOG2077 consensus JNK/SAPK-associated protein-1 [Signal transduction mechanisms]
Probab=55.40 E-value=1.1e+02 Score=31.84 Aligned_cols=49 Identities=22% Similarity=0.338 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 33 ARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (207)
Q Consensus 33 ArkIts~A~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~ 81 (207)
|--|.-|-+..+|-.|-.|-.-||..|.-..+.-.-|++|+..||.+|.
T Consensus 319 ALNiVKNDLIakVDeL~~E~~vLrgElea~kqak~Klee~i~elEEElk 367 (832)
T KOG2077|consen 319 ALNIVKNDLIAKVDELTCEKDVLRGELEAVKQAKLKLEEKIRELEEELK 367 (832)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567888999999999999999999998877888889999999999997
No 464
>PF04375 HemX: HemX; InterPro: IPR007470 The majority of proteins in this family are annotated as uroporphyrin-III C-methyltransferase (2.1.1.107 from EC) []; however, there is no direct evidence to support this annotation for these proteins, which come from mainly pathogenic Gram-negative organisms. There is some evidence to suggest that the proteins are membrane anchored as they have a predicted N-terminal signal peptide and transmembrane domain and may be involved in haem transport [].
Probab=55.21 E-value=1.6e+02 Score=27.34 Aligned_cols=18 Identities=22% Similarity=0.396 Sum_probs=7.9
Q ss_pred HhhhhhHHHHHHHHHHHH
Q 028596 43 TRVSDLESEHSALRSQLA 60 (207)
Q Consensus 43 tRVs~LEsE~~~LR~~La 60 (207)
.++..|+.++..+.+.+.
T Consensus 60 ~~~~~L~~ql~~~~~~~~ 77 (372)
T PF04375_consen 60 QQLQALQQQLQQLQQQLE 77 (372)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 344444444444444333
No 465
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=55.20 E-value=75 Score=22.94 Aligned_cols=11 Identities=55% Similarity=1.062 Sum_probs=9.6
Q ss_pred hHHHHhhCCCC
Q 028596 15 PEEVLQVLPSD 25 (207)
Q Consensus 15 p~eilsvLP~D 25 (207)
|.+||.+||.|
T Consensus 13 ~~~vL~~LP~~ 23 (109)
T PF10367_consen 13 PIDVLKLLPDD 23 (109)
T ss_pred HHHHHHhCcCC
Confidence 78899999985
No 466
>PF05266 DUF724: Protein of unknown function (DUF724); InterPro: IPR007930 This family contains several uncharacterised proteins found exclusively in Arabidopsis thaliana.
Probab=55.04 E-value=1.4e+02 Score=25.75 Aligned_cols=31 Identities=29% Similarity=0.428 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 028596 86 QAQADKERLSKENEALTNTVRKLQRDVSKLE 116 (207)
Q Consensus 86 ~a~ee~~kL~kE~~sLa~TVKkL~RDvaKLE 116 (207)
+...++.++..+...|...+-.|.+..+++.
T Consensus 121 ~~~~~~~~~e~~i~~Le~ki~el~~~~~~~~ 151 (190)
T PF05266_consen 121 EKEAELKELESEIKELEMKILELQRQAAKLK 151 (190)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556666666666666666666654444
No 467
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=54.91 E-value=1.4e+02 Score=29.93 Aligned_cols=34 Identities=18% Similarity=0.344 Sum_probs=19.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 48 LESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (207)
Q Consensus 48 LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~ 81 (207)
++.....+|.+...-.+.+.+++.|+..||..+.
T Consensus 362 ~~~~~~e~~~~~~~~~~~~~~~~~~l~~le~~l~ 395 (656)
T PRK06975 362 NDAQTAELRVKTEQAQASVHQLDSQFAQLDGKLA 395 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444455566677777777777665
No 468
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=54.69 E-value=1.6e+02 Score=30.01 Aligned_cols=83 Identities=20% Similarity=0.261 Sum_probs=51.7
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH----HHHHHHhhhHHH
Q 028596 42 STRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALT----NTVRKLQRDVSK 114 (207)
Q Consensus 42 atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~---~rL~~a~ee~~kL~kE~~sLa----~TVKkL~RDvaK 114 (207)
+..|.++|.++..|++.+.+=...+..=...+|.|+..|. ..|.....+++++++.-.+|- +.=-.|.|=..+
T Consensus 346 ~~~vr~~e~eL~el~~~~~~i~~~~~~~~~~yS~lq~~l~~~~~~l~~i~~~q~~~~e~L~~LrkdEl~Are~l~~~~~~ 425 (570)
T COG4477 346 LGSVRKFEKELKELESVLDEILENIEAQEVAYSELQDNLEEIEKALTDIEDEQEKVQEHLTSLRKDELEARENLERLKSK 425 (570)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556677777777777777666666555555555555555 444577777777776655543 223355666677
Q ss_pred HHHHHHHHHh
Q 028596 115 LEVFRKTLVQ 124 (207)
Q Consensus 115 LE~FKk~Lmq 124 (207)
|...||-+-.
T Consensus 426 l~eikR~mek 435 (570)
T COG4477 426 LHEIKRYMEK 435 (570)
T ss_pred HHHHHHHHHH
Confidence 7777776544
No 469
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=54.62 E-value=51 Score=25.60 Aligned_cols=35 Identities=29% Similarity=0.391 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 028596 83 KLGQAQADKERLSKENEALTNTVRKLQRDVSKLEV 117 (207)
Q Consensus 83 rL~~a~ee~~kL~kE~~sLa~TVKkL~RDvaKLE~ 117 (207)
|++.+..++++|++||..|..-.+--+.+|-.-+.
T Consensus 24 k~~ka~~~~~kL~~en~qlk~Ek~~~~~qvkn~~v 58 (87)
T PF10883_consen 24 KVKKAKKQNAKLQKENEQLKTEKAVAETQVKNAKV 58 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666666666555555555444433
No 470
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=54.60 E-value=1e+02 Score=33.38 Aligned_cols=31 Identities=13% Similarity=0.326 Sum_probs=17.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 47 DLESEHSALRSQLAEKDSRIAELQSQIESIY 77 (207)
Q Consensus 47 ~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le 77 (207)
+|-+++..+|..|.|-.+....+-++.+.||
T Consensus 327 kltrqkadirc~LlEarrk~egfddk~~eLE 357 (1265)
T KOG0976|consen 327 KLTRQKADIRCALLEARRKAEGFDDKLNELE 357 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHhhcchhHHHHHHH
Confidence 3445677777777766555544444444443
No 471
>PRK14143 heat shock protein GrpE; Provisional
Probab=54.35 E-value=1.6e+02 Score=26.35 Aligned_cols=10 Identities=50% Similarity=0.597 Sum_probs=4.5
Q ss_pred HHHHHHhhcc
Q 028596 118 FRKTLVQSLK 127 (207)
Q Consensus 118 FKk~LmqSLq 127 (207)
..|.|+..|.
T Consensus 154 i~k~l~~~L~ 163 (238)
T PRK14143 154 LYKQLVDVLK 163 (238)
T ss_pred HHHHHHHHHH
Confidence 3444444443
No 472
>TIGR01730 RND_mfp RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane.
Probab=54.31 E-value=1.4e+02 Score=25.41 Aligned_cols=10 Identities=10% Similarity=0.026 Sum_probs=3.8
Q ss_pred hHHHHHHHHH
Q 028596 48 LESEHSALRS 57 (207)
Q Consensus 48 LEsE~~~LR~ 57 (207)
+++++..++.
T Consensus 69 ~~~~~~~~~~ 78 (322)
T TIGR01730 69 ALAQLAAAEA 78 (322)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 473
>PF05852 DUF848: Gammaherpesvirus protein of unknown function (DUF848); InterPro: IPR008566 This family consists of several uncharacterised proteins from the Gammaherpesvirinae.
Probab=54.23 E-value=24 Score=29.80 Aligned_cols=6 Identities=17% Similarity=0.501 Sum_probs=3.1
Q ss_pred hHHHHH
Q 028596 29 QLDVAR 34 (207)
Q Consensus 29 QLdlAr 34 (207)
|++-|+
T Consensus 39 Qf~~t~ 44 (146)
T PF05852_consen 39 QFQFTK 44 (146)
T ss_pred HHHHHH
Confidence 555554
No 474
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=54.20 E-value=1.7e+02 Score=28.69 Aligned_cols=59 Identities=19% Similarity=0.405 Sum_probs=30.3
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALT 102 (207)
Q Consensus 40 A~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~~sLa 102 (207)
.+..++..|+.....+...+.++......+++++..+...|. ...+++.++.+.-++|-
T Consensus 348 ~l~~~l~~l~~~~~~~~~~i~~~~~~yS~i~~~l~~~~~~l~----~ie~~q~~~~~~l~~L~ 406 (560)
T PF06160_consen 348 ELEKQLKELEKRYEDLEERIEEQQVPYSEIQEELEEIEEQLE----EIEEEQEEINESLQSLR 406 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Confidence 444555556666666666666655555555555555554444 44444444444333333
No 475
>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []. This entry represents proteins annotated as RAB6-interacting golgins.
Probab=54.18 E-value=1.5e+02 Score=25.72 Aligned_cols=74 Identities=16% Similarity=0.274 Sum_probs=49.4
Q ss_pred HHHHhhhhhHHHHHHHHH---HHH----HHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHH
Q 028596 40 AISTRVSDLESEHSALRS---QLA----EKDSRIAELQSQIESIYSSLS----------DKLGQAQADKERLSKENEALT 102 (207)
Q Consensus 40 A~atRVs~LEsE~~~LR~---~La----EKd~~i~eLq~rvs~Le~~L~----------~rL~~a~ee~~kL~kE~~sLa 102 (207)
-+.++.+..|.+..+|-. .|. =....++.+++++....++|. --++++++--+..++|++.|+
T Consensus 53 kVq~~LgrveEetkrLa~ireeLE~l~dP~RkEv~~vRkkID~vNreLkpl~~~cqKKEkEykealea~nEknkeK~~Lv 132 (159)
T PF04949_consen 53 KVQAQLGRVEEETKRLAEIREELEVLADPMRKEVEMVRKKIDSVNRELKPLGQSCQKKEKEYKEALEAFNEKNKEKAQLV 132 (159)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555655554433 332 134567888888888888886 336677788888999999998
Q ss_pred HHHHHHhhhHH
Q 028596 103 NTVRKLQRDVS 113 (207)
Q Consensus 103 ~TVKkL~RDva 113 (207)
..+-.|-.+-+
T Consensus 133 ~~L~eLv~eSE 143 (159)
T PF04949_consen 133 TRLMELVSESE 143 (159)
T ss_pred HHHHHHHHHHH
Confidence 88777765443
No 476
>PF14077 WD40_alt: Alternative WD40 repeat motif
Probab=54.16 E-value=8.1 Score=27.39 Aligned_cols=18 Identities=44% Similarity=0.599 Sum_probs=15.0
Q ss_pred HHHhhhhhHHHHHHHHHH
Q 028596 41 ISTRVSDLESEHSALRSQ 58 (207)
Q Consensus 41 ~atRVs~LEsE~~~LR~~ 58 (207)
+.-||+.||.|++.||..
T Consensus 16 l~vrv~eLEeEV~~LrKI 33 (48)
T PF14077_consen 16 LRVRVSELEEEVRTLRKI 33 (48)
T ss_pred heeeHHHHHHHHHHHHHH
Confidence 456899999999999864
No 477
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=54.09 E-value=44 Score=31.21 Aligned_cols=11 Identities=18% Similarity=0.292 Sum_probs=5.4
Q ss_pred HHHHHHHHHHh
Q 028596 114 KLEVFRKTLVQ 124 (207)
Q Consensus 114 KLE~FKk~Lmq 124 (207)
.++.|-..++.
T Consensus 208 ~~~~~l~~ii~ 218 (370)
T PF02994_consen 208 GPENFLEEIIP 218 (370)
T ss_dssp HHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 34455555554
No 478
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=54.06 E-value=1.5e+02 Score=25.81 Aligned_cols=38 Identities=21% Similarity=0.250 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 028596 83 KLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRK 120 (207)
Q Consensus 83 rL~~a~ee~~kL~kE~~sLa~TVKkL~RDvaKLE~FKk 120 (207)
.+....++|.+|.+|+..|......++.--+..+.+|+
T Consensus 70 ~~~~l~~en~~L~~e~~~l~~~~~~~~~l~~en~~L~~ 107 (276)
T PRK13922 70 SLFDLREENEELKKELLELESRLQELEQLEAENARLRE 107 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34466777777777777777777766555555555555
No 479
>KOG0962 consensus DNA repair protein RAD50, ABC-type ATPase/SMC superfamily [Replication, recombination and repair]
Probab=53.93 E-value=1.3e+02 Score=33.26 Aligned_cols=66 Identities=17% Similarity=0.370 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 028596 50 SEHSALRSQLAEKDSRIAELQSQIESIYSSLS------DKLGQAQADKERLSKENEALTNTVRKLQRDVSKL 115 (207)
Q Consensus 50 sE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~------~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDvaKL 115 (207)
.....+|..+.+...+|..-.++++.+|.++. .-+....++..++..+...|...-+++..+++.|
T Consensus 216 ~~~e~~~l~i~~~~~ki~~~ke~v~e~e~e~~~~~~~i~ei~~~~~el~k~~~~~~~l~~e~~~l~~~~~~l 287 (1294)
T KOG0962|consen 216 ERAEVLRLNIHSGQRKIEKSKEEVSELENELGPIEAKIEEIEKSLKELEKLLKQVKLLDSEHKNLKKQISRL 287 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667777788888888888888888888886 3333444455555555555555544444444443
No 480
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=53.77 E-value=79 Score=22.56 Aligned_cols=43 Identities=21% Similarity=0.293 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 32 VARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESI 76 (207)
Q Consensus 32 lArkIts~A~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~L 76 (207)
+|.-+...-+..| .+..++..+.+++.+......+|+.+++.|
T Consensus 15 ~~~~~v~~~~~~~--~~~~~~~~~~~~~~~l~~en~~L~~ei~~l 57 (85)
T TIGR02209 15 SAISVVSAQHQTR--QLNNELQKLQLEIDKLQKEWRDLQLEVAEL 57 (85)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 481
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=53.71 E-value=2.1e+02 Score=29.22 Aligned_cols=89 Identities=21% Similarity=0.351 Sum_probs=0.0
Q ss_pred HHHHhhhhhHHHHHHHHHHH----------HHHHHHHH-HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 40 AISTRVSDLESEHSALRSQL----------AEKDSRIA-ELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTV 105 (207)
Q Consensus 40 A~atRVs~LEsE~~~LR~~L----------aEKd~~i~-eLq~rvs~Le~~L~---~rL~~a~ee~~kL~kE~~sLa~TV 105 (207)
|+--|.-.+|.|+..||.+. .+|.+..+ ++.+++-.+..+.+ .-|.....+++.+++|+..|.+.+
T Consensus 163 aL~ekLk~~~een~~lr~k~~llk~Et~~~~~keq~~y~~~~KelrdtN~q~~s~~eel~~kt~el~~q~Ee~skLlsql 242 (596)
T KOG4360|consen 163 ALQEKLKPLEEENTQLRSKAMLLKTETLTYEEKEQQLYGDCVKELRDTNTQARSGQEELQSKTKELSRQQEENSKLLSQL 242 (596)
T ss_pred HHHhhcCChHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhhhHHHHHHHHHHHHhhccc
Q 028596 106 RKLQRDVSKLEVFRKTLVQSLKD 128 (207)
Q Consensus 106 KkL~RDvaKLE~FKk~LmqSLq~ 128 (207)
-.|.+.+--+--=|--+-.-||.
T Consensus 243 ~d~qkk~k~~~~Ekeel~~~Lq~ 265 (596)
T KOG4360|consen 243 VDLQKKIKYLRHEKEELDEHLQA 265 (596)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHH
No 482
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=53.62 E-value=2.5e+02 Score=28.19 Aligned_cols=15 Identities=20% Similarity=0.206 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHH
Q 028596 67 AELQSQIESIYSSLS 81 (207)
Q Consensus 67 ~eLq~rvs~Le~~L~ 81 (207)
++|==|+...|.+..
T Consensus 430 gEllvrl~eaeea~~ 444 (488)
T PF06548_consen 430 GELLVRLREAEEAAS 444 (488)
T ss_pred HHHHHHHHhHHHHHH
Confidence 344444444444443
No 483
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=53.52 E-value=43 Score=25.49 Aligned_cols=37 Identities=24% Similarity=0.474 Sum_probs=24.5
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSL 80 (207)
Q Consensus 40 A~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L 80 (207)
|+.+||..|+..+..|+..+ .-+.+|.+|+..+..+|
T Consensus 15 ~vd~KVdaLq~~V~~l~~~~----~~v~~l~~klDa~~~~l 51 (75)
T PF05531_consen 15 AVDDKVDALQTQVDDLESNL----PDVTELNKKLDAQSAQL 51 (75)
T ss_pred HHHHHHHHHHHHHHHHHhcC----CchHHHHHHHHHHHHHH
Confidence 67788888888887777666 34555555555555555
No 484
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=53.47 E-value=2.9e+02 Score=29.03 Aligned_cols=35 Identities=34% Similarity=0.470 Sum_probs=27.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 47 DLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (207)
Q Consensus 47 ~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~ 81 (207)
.|...+..|.+.|.++++.++++..++...+..++
T Consensus 518 ~Lse~aqqLE~~Lq~~qe~la~l~~QL~~Ar~~lq 552 (739)
T PF07111_consen 518 QLSEVAQQLEQELQEKQESLAELEEQLEAARKSLQ 552 (739)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 44445677888888888888888888888777776
No 485
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=53.44 E-value=1.8e+02 Score=26.61 Aligned_cols=9 Identities=0% Similarity=0.054 Sum_probs=3.3
Q ss_pred HHHHhhhhh
Q 028596 40 AISTRVSDL 48 (207)
Q Consensus 40 A~atRVs~L 48 (207)
...+++..+
T Consensus 60 ~~~~~l~~a 68 (258)
T PF15397_consen 60 SNHKQLQQA 68 (258)
T ss_pred cChHHHHHH
Confidence 333333333
No 486
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=53.28 E-value=1.7e+02 Score=26.27 Aligned_cols=66 Identities=21% Similarity=0.300 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 028596 52 HSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKT 121 (207)
Q Consensus 52 ~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDvaKLE~FKk~ 121 (207)
+..||.-+.+++..-.+++.+...+...-.+| .++..+..+|...-..-. +.+..|+.+.+..|+.
T Consensus 148 ~~slK~vlk~R~~~Q~~le~k~e~l~k~~~dr-~~~~~ev~~~e~kve~a~---~~~k~e~~Rf~~~k~~ 213 (243)
T cd07666 148 SETLMGVIKRRDQIQAELDSKVEALANKKADR-DLLKEEIEKLEDKVECAN---NALKADWERWKQNMQT 213 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 66667777777655555555444443321123 233333333333322222 2344666666554443
No 487
>PF14357 DUF4404: Domain of unknown function (DUF4404)
Probab=53.15 E-value=28 Score=26.33 Aligned_cols=76 Identities=17% Similarity=0.296 Sum_probs=38.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh----hHHHHHHHHHHHH
Q 028596 48 LESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQR----DVSKLEVFRKTLV 123 (207)
Q Consensus 48 LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~~sLa~TVKkL~R----DvaKLE~FKk~Lm 123 (207)
|-.....||++|.+-+..=.+.+..+.+|...++..|.. ...-..+..+|...+..+-. +==+|-..-|+||
T Consensus 2 L~~~L~~L~~eL~~~~~ld~~~~~~L~~l~~dIe~~L~~----~~~~~~~~~~l~d~l~~av~~FE~~HP~l~~~lr~i~ 77 (85)
T PF14357_consen 2 LQELLEKLHQELEQNPPLDEETRAELSSLDDDIEAQLAE----EDEAEAEDESLVDRLNEAVERFEASHPKLAGILRNIM 77 (85)
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHhc----CCcccccchhHHHHHHHHHHHHHHhCCcHHHHHHHHH
Confidence 456677788888765555555666666666666522222 00111123344443333222 2223445677777
Q ss_pred hhcc
Q 028596 124 QSLK 127 (207)
Q Consensus 124 qSLq 127 (207)
.+|.
T Consensus 78 ~sLa 81 (85)
T PF14357_consen 78 DSLA 81 (85)
T ss_pred HHHH
Confidence 7774
No 488
>PF04363 DUF496: Protein of unknown function (DUF496); InterPro: IPR007458 Members of this family are uncharacterised proteins.
Probab=53.14 E-value=1.1e+02 Score=24.38 Aligned_cols=57 Identities=16% Similarity=0.362 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028596 53 SALRSQLAEKDSRIAELQSQIESIYSSLS-----------------------DKLGQAQADKERLSKENEALTNTVRKLQ 109 (207)
Q Consensus 53 ~~LR~~LaEKd~~i~eLq~rvs~Le~~L~-----------------------~rL~~a~ee~~kL~kE~~sLa~TVKkL~ 109 (207)
-.|+..+.+-+..|.+=|+|+.-|+.-.+ +|.-.-.=.++.|.+|+..+...+|.+.
T Consensus 15 NKl~REi~Dn~kKIRDNqKRV~LLdNL~~YI~~~Ms~edi~~II~nMr~DYEdRVDDyiIknAElsKeRReis~k~k~~k 94 (95)
T PF04363_consen 15 NKLKREIEDNEKKIRDNQKRVLLLDNLSDYIKPDMSIEDIRAIIENMRSDYEDRVDDYIIKNAELSKERREISKKIKELK 94 (95)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHhHHHHhHHHHHHhhHHHhHHHHHHHHHHHHhc
Confidence 45666677778888888888888776544 3333344456889999999988887653
No 489
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=53.11 E-value=90 Score=31.93 Aligned_cols=135 Identities=17% Similarity=0.226 Sum_probs=81.9
Q ss_pred CCCChHHHHhhCCCCchhhHHHHHH-HHHHHHHHhhhhh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 11 TFDLPEEVLQVLPSDPFEQLDVARK-ITSIAISTRVSDL----ESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLG 85 (207)
Q Consensus 11 ~f~Lp~eilsvLP~DP~EQLdlArk-Its~A~atRVs~L----EsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~~rL~ 85 (207)
.+.|.-.++.+=-.|||--.|+-+| =...|+..-.-.+ --....+++.++|.+.+|.-|++.-..|-++|
T Consensus 394 ~mg~s~~~f~~~ead~~~~id~r~k~Hv~pafs~efi~yy~~rn~rm~~i~~~m~e~~s~~~~le~eq~~l~~ey----- 468 (707)
T KOG0957|consen 394 EMGLSRKEFRQREADPFFNIDLRSKSHVPPAFSKEFIEYYTKRNERMSGISSFMQERDSQIIPLEEEQLRLSREY----- 468 (707)
T ss_pred HhcccHhhhcccccCccccccccccccCCccccHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHH-----
Confidence 4556666666666788887777666 2222222111111 01246678888888888887776554444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccccCCCCC-CccccCCCCCCCCCCCCCCCC
Q 028596 86 QAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLKDDEDASTG-ATRIAKPTPNEDDAAVAPTGT 156 (207)
Q Consensus 86 ~a~ee~~kL~kE~~sLa~TVKkL~RDvaKLE~FKk~LmqSLq~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 156 (207)
.++.++|..+.++-++|--..+-++.+--++..|++-=+....+ .++...+..++.+-...+|+|
T Consensus 469 ------~~~~e~~~e~k~~~~~L~~~~~~~~~llgqi~~~i~kl~~pl~e~~pks~~p~~~~~~rk~g~~st 534 (707)
T KOG0957|consen 469 ------LAETEANQEKKSSQKHLVERFSANEELLGQILTSIEKLHQPLTELGPKSGLPLSDFNNRKSGSRST 534 (707)
T ss_pred ------HHHHHHHHHHHHhHHHHHHHhhhHHHHHHhhhhhHHHhcchhhhcCCccCCcCcccccccccccCC
Confidence 35556666677777777777888888888888887766655544 334456666655444444433
No 490
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=53.08 E-value=1.5e+02 Score=25.57 Aligned_cols=14 Identities=14% Similarity=0.375 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHH
Q 028596 67 AELQSQIESIYSSL 80 (207)
Q Consensus 67 ~eLq~rvs~Le~~L 80 (207)
..|+.-+..|+..|
T Consensus 139 ~~Le~~~~~le~~l 152 (221)
T PF05700_consen 139 EQLEAMLKRLEKEL 152 (221)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444444
No 491
>PF15003 HAUS2: HAUS augmin-like complex subunit 2
Probab=53.05 E-value=2e+02 Score=26.87 Aligned_cols=85 Identities=20% Similarity=0.245 Sum_probs=60.8
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHH----HHHHHHHHHHHHHHHHH-------------
Q 028596 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIES----IYSSLS----DKLGQAQADKERLSKEN------------- 98 (207)
Q Consensus 40 A~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~----Le~~L~----~rL~~a~ee~~kL~kE~------------- 98 (207)
.++.|...|..=...|..-|.+|++.+.-|++=+.. .|+.++ .-|..+-....+|..--
T Consensus 87 ~L~~K~~~Lq~m~shLe~VLk~K~~Lr~RLqkP~~qe~LPVEA~yHr~vVeLL~laa~fi~~Le~~LetIrwip~~~~~~ 166 (277)
T PF15003_consen 87 YLAEKCEALQSMNSHLEAVLKEKDRLRQRLQKPYCQENLPVEAQYHRYVVELLELAASFIEKLEEHLETIRWIPNFDENP 166 (277)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhhhcCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccccccH
Confidence 678888888888889999999999999888765542 455555 44444444455554433
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHh
Q 028596 99 EALTNTVRKLQRDVSKLEVFRKTLVQ 124 (207)
Q Consensus 99 ~sLa~TVKkL~RDvaKLE~FKk~Lmq 124 (207)
..+...+.++---|++.|.|=.++++
T Consensus 167 ~~m~~aL~ki~~lvae~E~l~e~ilk 192 (277)
T PF15003_consen 167 SNMDKALAKIDALVAECEELAEQILK 192 (277)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777888888888888877765
No 492
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=52.94 E-value=1.3e+02 Score=24.90 Aligned_cols=86 Identities=24% Similarity=0.366 Sum_probs=0.0
Q ss_pred HHHhhhhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHH-----HHHHHHHHHHHHHHHHHHHHHHhhh
Q 028596 41 ISTRVSDLESEHSALR-SQLAEKDSRIAELQSQIESIYSSLS---DKLGQ-----AQADKERLSKENEALTNTVRKLQRD 111 (207)
Q Consensus 41 ~atRVs~LEsE~~~LR-~~LaEKd~~i~eLq~rvs~Le~~L~---~rL~~-----a~ee~~kL~kE~~sLa~TVKkL~RD 111 (207)
+.+.+++|=+|+..++ ...++=......|+..+..|+..|. .+++. ...+......|...+...++.++..
T Consensus 56 ~~a~~~eLr~el~~~~k~~~~~lr~~~e~L~~eie~l~~~L~~ei~~l~a~~klD~n~eK~~~r~e~~~~~~ki~e~~~k 135 (177)
T PF07798_consen 56 FKAAIAELRSELQNSRKSEFAELRSENEKLQREIEKLRQELREEINKLRAEVKLDLNLEKGRIREEQAKQELKIQELNNK 135 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHH--------HHHHHHHHHhhc
Q 028596 112 VSK--------LEVFRKTLVQSL 126 (207)
Q Consensus 112 vaK--------LE~FKk~LmqSL 126 (207)
+.. +|+.|-.+++.+
T Consensus 136 i~~ei~~lr~~iE~~K~~~lr~~ 158 (177)
T PF07798_consen 136 IDTEIANLRTEIESLKWDTLRWL 158 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
No 493
>PF04065 Not3: Not1 N-terminal domain, CCR4-Not complex component ; InterPro: IPR007207 The Ccr4-Not complex (Not1, Not2, Not3, Not4 and Not5) is a global regulator of transcription that affects genes positively and negatively and is thought to regulate transcription factor TFIID []. This domain is the N-terminal region of the Not proteins.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=52.90 E-value=59 Score=29.09 Aligned_cols=59 Identities=24% Similarity=0.388 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 028596 63 DSRIAELQSQIESIYSSLSDKLGQAQADK---ERLSKENEALTNTVRKLQRDVSKLEVFRKTL 122 (207)
Q Consensus 63 d~~i~eLq~rvs~Le~~L~~rL~~a~ee~---~kL~kE~~sLa~TVKkL~RDvaKLE~FKk~L 122 (207)
...|.+|+.++..+|.++ .+|....-.. ..-+.....|...+.+.+-.+.+||.+-|.|
T Consensus 128 ~~~Id~L~~QiE~~E~E~-E~L~~~~kKkk~~~~~~~r~~~l~~~ierhk~Hi~kLE~lLR~L 189 (233)
T PF04065_consen 128 KDSIDELNRQIEQLEAEI-ESLSSQKKKKKKDSTKQERIEELESRIERHKFHIEKLELLLRLL 189 (233)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHhhccCccCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
No 494
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=52.90 E-value=1.7e+02 Score=26.25 Aligned_cols=82 Identities=17% Similarity=0.083 Sum_probs=0.0
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 028596 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIE-SIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVF 118 (207)
Q Consensus 40 A~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs-~Le~~L~~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDvaKLE~F 118 (207)
..-.++..|+..+-.+|..+.-+.+.+..|..... .+..+.+..++...++..++.+..+.+.+-+..|..-..-+-+-
T Consensus 177 ~~l~~l~~l~~~l~~lr~~l~~~~~~l~~l~~~~~~~~~~~~~~~l~dv~~~~~~~~~~~~~~~~~l~~l~d~~~s~is~ 256 (322)
T COG0598 177 EELERLGELRRSLVYLRRALAPLRDVLLRLARRPLDWLSEEDREYLRDVLDHLTQLIEMLEALRERLSSLLDAYLSLINN 256 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHH
Q 028596 119 RKT 121 (207)
Q Consensus 119 Kk~ 121 (207)
+.+
T Consensus 257 ~~N 259 (322)
T COG0598 257 NQN 259 (322)
T ss_pred HHH
No 495
>PF14817 HAUS5: HAUS augmin-like complex subunit 5
Probab=52.81 E-value=2.7e+02 Score=28.45 Aligned_cols=80 Identities=16% Similarity=0.303 Sum_probs=0.0
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 028596 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEV 117 (207)
Q Consensus 41 ~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~---~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDvaKLE~ 117 (207)
+...|.+|.+||..|++++......+..-+..+...-..+. .|-.....-..+-..+...|..-.++|+..|..|+.
T Consensus 84 L~~everLraei~~l~~~I~~~e~e~~~~e~~~~q~~~~~~~~~~k~~LL~Ay~q~c~~~~~~l~e~~~rl~~~~~~~q~ 163 (632)
T PF14817_consen 84 LEKEVERLRAEIQELDKEIESREREVSRQEASREQMLDKISDSRHKQLLLEAYSQQCEEQRRILREYTKRLQGQVEQLQD 163 (632)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHH
Q 028596 118 FRK 120 (207)
Q Consensus 118 FKk 120 (207)
..|
T Consensus 164 ~~R 166 (632)
T PF14817_consen 164 IQR 166 (632)
T ss_pred HHh
No 496
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.74 E-value=1.2e+02 Score=31.36 Aligned_cols=75 Identities=23% Similarity=0.269 Sum_probs=0.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 028596 46 SDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS------DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFR 119 (207)
Q Consensus 46 s~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~------~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDvaKLE~FK 119 (207)
+.+|.+-++||..|-|=--.-+-|=..|+.||.+=+ +-|+...=+-.-|--|+..|..++-=||-.+.-+..+|
T Consensus 145 ~~~E~qR~rlr~elKe~KfRE~RllseYSELEEENIsLQKqVs~LR~sQVEyEglkheikRleEe~elln~q~ee~~~Lk 224 (772)
T KOG0999|consen 145 AAVEDQRRRLRDELKEYKFREARLLSEYSELEEENISLQKQVSNLRQSQVEYEGLKHEIKRLEEETELLNSQLEEAIRLK 224 (772)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred H
Q 028596 120 K 120 (207)
Q Consensus 120 k 120 (207)
.
T Consensus 225 ~ 225 (772)
T KOG0999|consen 225 E 225 (772)
T ss_pred H
No 497
>PF05103 DivIVA: DivIVA protein; InterPro: IPR007793 The Bacillus subtilis divIVA1 mutation causes misplacement of the septum during cell division, resulting in the formation of small, circular, anucleate minicells []. Inactivation of divIVA produces a minicell phenotype, whereas overproduction of DivIVA results in a filamentation phenotype []. These proteins appear to contain coiled-coils.; PDB: 2WUK_C 2WUJ_A.
Probab=52.74 E-value=13 Score=28.43 Aligned_cols=43 Identities=28% Similarity=0.452 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhc
Q 028596 84 LGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSL 126 (207)
Q Consensus 84 L~~a~ee~~kL~kE~~sLa~TVKkL~RDvaKLE~FKk~LmqSL 126 (207)
|....++...|.+|++.|...+..|+..+..++.-...|-+.|
T Consensus 27 l~~l~~~~~~l~~e~~~L~~~~~~l~~~l~~~~~~~~~l~~~l 69 (131)
T PF05103_consen 27 LDELAEELERLQRENAELKEEIEELQAQLEELREEEESLQRAL 69 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCCT---------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHhh
No 498
>PF02646 RmuC: RmuC family; InterPro: IPR003798 This protein contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures []. Proteins in this family are predicted to contain a central endonuclease-like fold domain, surrounded by coiled coils, consistent with a direct role in DNA cleavage [, ].
Probab=52.71 E-value=1.1e+02 Score=27.54 Aligned_cols=59 Identities=19% Similarity=0.357 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhh
Q 028596 49 ESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKEN---EALTNTVRKLQR 110 (207)
Q Consensus 49 EsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~---~sLa~TVKkL~R 110 (207)
|..+..|..-+.|+-. .+++++..++...+..+....+...+|.+.+ ..|...+.+|.+
T Consensus 1 ~~~l~~l~~pl~e~l~---~~~~~l~~~~~~~~~~~~~L~~~l~~l~~~~~~~~~l~~~~~~L~~ 62 (304)
T PF02646_consen 1 QEQLEQLLKPLKEQLE---KFEKRLEESFEQRSEEFGSLKEQLKQLSEANGEIQQLSQEASNLTS 62 (304)
T ss_pred ChhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
No 499
>KOG0244 consensus Kinesin-like protein [Cytoskeleton]
Probab=52.57 E-value=49 Score=35.20 Aligned_cols=86 Identities=24% Similarity=0.259 Sum_probs=0.0
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 028596 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQS---QIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEV 117 (207)
Q Consensus 41 ~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~---rvs~Le~~L~~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDvaKLE~ 117 (207)
.+.+-.+|-.|...|-.+|++|+..+...-. ..+.+..++.........+...|+.|++.|-+.+.+.++.-+||-.
T Consensus 465 ~~~~q~~ls~el~el~k~l~~Ke~l~rr~~~~~~~~~~~~~~~e~~~~~le~e~~~le~E~~~l~~el~~~~~~~~kl~e 544 (913)
T KOG0244|consen 465 HPQKQGSLSGELSELEKRLAEKEPLTRRKAYEKAEKSKAKEQYESDSGTLEAEKSPLESERSRLRNELNVFNRLAAKLGE 544 (913)
T ss_pred chHHHhhhhHHHHHHHhhhccccHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHhcccccccHHHHHHHHhhhHHHHHhhh
Q ss_pred HHHHHHhhc
Q 028596 118 FRKTLVQSL 126 (207)
Q Consensus 118 FKk~LmqSL 126 (207)
=+++.+++|
T Consensus 545 er~qklk~l 553 (913)
T KOG0244|consen 545 ERVQKLKSL 553 (913)
T ss_pred HHHHHHHHH
No 500
>PRK00736 hypothetical protein; Provisional
Probab=52.29 E-value=89 Score=22.71 Aligned_cols=62 Identities=15% Similarity=0.232 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccccCCCCCCccccCCC
Q 028596 82 DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLKDDEDASTGATRIAKPT 143 (207)
Q Consensus 82 ~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDvaKLE~FKk~LmqSLq~D~~~~~~~~~~~~~~ 143 (207)
+|+.....+.+-+..-.+.|...|.+.++++++|+.=-+.|...|.+-++.....++...|.
T Consensus 5 ~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~~~~~~~~~~~~~~PP 66 (68)
T PRK00736 5 ERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLSLEEQAAPDVPVTKPP 66 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCCCcC
Done!