Query 028596
Match_columns 207
No_of_seqs 73 out of 75
Neff 3.2
Searched_HMMs 29240
Date Mon Mar 25 23:28:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028596.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028596hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1c1g_A Tropomyosin; contractIl 97.1 0.02 6.8E-07 44.2 13.5 42 40-81 3-44 (284)
2 3u1c_A Tropomyosin alpha-1 cha 97.0 0.035 1.2E-06 41.9 13.9 77 40-116 20-99 (101)
3 3hnw_A Uncharacterized protein 96.7 0.029 1E-06 44.7 11.7 71 37-111 62-132 (138)
4 3u59_A Tropomyosin beta chain; 96.6 0.082 2.8E-06 39.5 13.4 77 40-116 20-99 (101)
5 2dfs_A Myosin-5A; myosin-V, in 96.4 0.036 1.2E-06 56.1 13.4 80 41-122 982-1061(1080)
6 3a7p_A Autophagy protein 16; c 96.0 0.076 2.6E-06 43.7 11.0 71 40-114 72-143 (152)
7 3bas_A Myosin heavy chain, str 95.8 0.16 5.3E-06 37.4 10.8 69 44-112 15-86 (89)
8 2dfs_A Myosin-5A; myosin-V, in 95.2 0.021 7.2E-07 57.8 5.8 71 45-115 923-996 (1080)
9 2v4h_A NF-kappa-B essential mo 95.2 0.13 4.5E-06 40.4 9.1 64 49-116 44-110 (110)
10 2fxo_A Myosin heavy chain, car 95.1 0.7 2.4E-05 35.7 12.9 33 82-114 62-94 (129)
11 2efr_A General control protein 94.6 1 3.4E-05 36.8 13.2 78 40-117 67-147 (155)
12 3oja_B Anopheles plasmodium-re 94.5 0.24 8.3E-06 44.6 10.2 40 89-128 544-583 (597)
13 2b9c_A Striated-muscle alpha t 94.5 0.64 2.2E-05 37.3 11.6 74 39-112 48-124 (147)
14 2v71_A Nuclear distribution pr 94.4 0.8 2.7E-05 38.6 12.6 41 88-128 94-134 (189)
15 3a7o_A Autophagy protein 16; c 94.4 0.3 1E-05 36.2 8.6 61 45-109 13-73 (75)
16 2fxo_A Myosin heavy chain, car 94.3 1.1 3.6E-05 34.7 12.2 76 41-116 39-124 (129)
17 3cvf_A Homer-3, homer protein 93.9 0.36 1.2E-05 35.8 8.3 70 46-122 2-71 (79)
18 3m9b_A Proteasome-associated A 93.5 0.054 1.8E-06 47.6 3.9 69 42-115 23-94 (251)
19 3i00_A HIP-I, huntingtin-inter 93.4 0.59 2E-05 36.7 9.3 53 48-100 20-79 (120)
20 3o0z_A RHO-associated protein 93.4 1.4 4.9E-05 36.6 12.0 66 47-116 66-138 (168)
21 2v66_B Nuclear distribution pr 93.4 2 6.7E-05 33.5 12.1 60 40-99 7-73 (111)
22 3oja_B Anopheles plasmodium-re 93.3 0.81 2.8E-05 41.2 11.3 22 92-113 540-561 (597)
23 1i84_S Smooth muscle myosin he 93.3 0.6 2E-05 47.1 11.4 74 44-117 858-941 (1184)
24 3nmd_A CGMP dependent protein 93.0 0.4 1.4E-05 35.1 7.2 45 52-100 21-65 (72)
25 3na7_A HP0958; flagellar bioge 92.9 2.5 8.4E-05 35.5 13.1 82 25-108 88-169 (256)
26 3hnw_A Uncharacterized protein 92.7 1.3 4.5E-05 35.1 10.5 54 64-117 75-131 (138)
27 3s4r_A Vimentin; alpha-helix, 92.5 2.5 8.4E-05 31.4 11.5 71 40-116 20-90 (93)
28 4emc_A Monopolin complex subun 92.5 0.43 1.5E-05 40.5 7.8 37 45-81 22-58 (190)
29 1ic2_A Tropomyosin alpha chain 92.4 2.1 7.3E-05 30.6 11.2 37 44-80 21-57 (81)
30 3tnu_B Keratin, type II cytosk 92.4 2.9 9.9E-05 32.1 11.9 21 40-60 40-60 (129)
31 1ic2_A Tropomyosin alpha chain 92.2 2.2 7.4E-05 30.6 10.2 42 40-81 3-44 (81)
32 3vkg_A Dynein heavy chain, cyt 92.2 0.94 3.2E-05 51.0 12.0 85 43-127 2014-2133(3245)
33 3jsv_C NF-kappa-B essential mo 92.2 0.76 2.6E-05 35.2 8.1 66 48-117 21-89 (94)
34 3na7_A HP0958; flagellar bioge 92.2 3 0.0001 34.9 12.6 28 99-126 146-173 (256)
35 2q6q_A Spindle POLE BODY compo 92.1 1.2 4E-05 32.9 8.7 58 52-113 5-62 (74)
36 1l8d_A DNA double-strand break 92.0 2.7 9.2E-05 30.7 11.6 32 86-117 68-99 (112)
37 3tnu_A Keratin, type I cytoske 91.4 2.8 9.6E-05 32.3 10.7 67 40-110 42-119 (131)
38 4fm3_A Uncharacterized hypothe 91.3 2.7 9.1E-05 32.2 10.3 87 26-112 5-94 (98)
39 3mq9_A Bone marrow stromal ant 90.9 7.9 0.00027 34.1 15.4 23 95-117 442-464 (471)
40 2v71_A Nuclear distribution pr 90.0 5.7 0.00019 33.4 12.2 67 40-106 60-133 (189)
41 1gd2_E Transcription factor PA 89.8 0.74 2.5E-05 33.1 5.7 45 60-115 25-69 (70)
42 1x79_B RAB GTPase binding effe 89.7 1.1 3.7E-05 35.1 7.0 15 46-60 9-23 (112)
43 3nmd_A CGMP dependent protein 89.6 1.2 4.1E-05 32.6 6.8 37 45-81 21-57 (72)
44 2v66_B Nuclear distribution pr 89.6 6.1 0.00021 30.7 11.8 77 52-128 5-81 (111)
45 3tnu_A Keratin, type I cytoske 89.4 6 0.00021 30.4 11.7 75 48-122 36-117 (131)
46 3tnu_B Keratin, type II cytosk 88.9 6.5 0.00022 30.1 11.7 74 49-122 35-115 (129)
47 2akf_A Coronin-1A; coiled coil 88.8 0.53 1.8E-05 29.7 3.8 30 45-81 1-30 (32)
48 2e7s_A RAB guanine nucleotide 88.4 2.3 8E-05 34.2 8.3 46 25-71 5-53 (135)
49 2xnx_M M protein, M1-BC1; cell 88.4 0.45 1.5E-05 39.0 4.2 37 86-122 98-134 (146)
50 1cii_A Colicin IA; bacteriocin 88.3 3.3 0.00011 40.0 10.5 64 50-113 349-415 (602)
51 3a7p_A Autophagy protein 16; c 88.2 7.6 0.00026 31.9 11.4 29 86-114 100-128 (152)
52 2jee_A YIIU; FTSZ, septum, coi 87.5 7.2 0.00025 29.0 10.5 46 64-109 27-75 (81)
53 2wt7_A Proto-oncogene protein 87.3 4.4 0.00015 27.8 8.2 35 85-119 26-60 (63)
54 1gk4_A Vimentin; intermediate 87.1 6.7 0.00023 28.2 10.8 67 40-113 5-71 (84)
55 1wt6_A Myotonin-protein kinase 87.0 5.5 0.00019 29.8 9.0 56 45-108 16-71 (81)
56 4etp_A Kinesin-like protein KA 86.9 0.96 3.3E-05 40.9 5.9 35 43-77 3-37 (403)
57 3qh9_A Liprin-beta-2; coiled-c 86.8 1.3 4.5E-05 33.2 5.5 34 40-73 30-77 (81)
58 2eqb_B RAB guanine nucleotide 86.8 8.9 0.00031 29.3 11.7 71 43-113 19-93 (97)
59 1x4t_A Hypothetical protein LO 86.7 0.89 3.1E-05 34.7 4.7 48 62-109 30-79 (92)
60 1m1j_B Fibrinogen beta chain; 86.4 13 0.00044 34.9 13.3 73 55-127 126-199 (464)
61 3s9g_A Protein hexim1; cyclin 85.7 4.2 0.00014 31.7 8.0 49 40-99 41-89 (104)
62 1go4_E MAD1 (mitotic arrest de 85.6 4.5 0.00015 31.1 8.1 24 86-109 72-95 (100)
63 3o0z_A RHO-associated protein 85.5 15 0.0005 30.5 13.2 79 44-122 42-123 (168)
64 1l8d_A DNA double-strand break 85.4 8.8 0.0003 27.9 10.6 38 90-127 65-102 (112)
65 3mq7_A Bone marrow stromal ant 84.5 5.6 0.00019 31.7 8.4 34 48-81 30-63 (121)
66 1ci6_A Transcription factor AT 84.2 2.8 9.6E-05 29.0 5.9 36 83-118 24-59 (63)
67 1x8y_A Lamin A/C; structural p 84.2 9.9 0.00034 27.6 9.4 66 41-113 8-73 (86)
68 3mov_A Lamin-B1; LMNB1, B-type 83.9 5.3 0.00018 29.9 7.8 64 43-113 19-82 (95)
69 4ghu_A TNF receptor-associated 83.6 1.5 5.3E-05 35.5 5.1 32 47-78 4-35 (198)
70 1t2k_D Cyclic-AMP-dependent tr 83.5 8.2 0.00028 26.1 9.0 33 86-118 26-58 (61)
71 1jnm_A Proto-oncogene C-JUN; B 83.5 4.2 0.00014 27.7 6.5 35 83-117 23-57 (62)
72 1lwu_C Fibrinogen gamma chain; 83.3 3.5 0.00012 36.9 7.7 42 40-81 2-43 (323)
73 3ghg_A Fibrinogen alpha chain; 82.9 12 0.0004 36.3 11.4 16 115-130 178-193 (562)
74 1x8y_A Lamin A/C; structural p 82.7 7.2 0.00025 28.3 7.9 65 50-121 3-67 (86)
75 1hjb_A Ccaat/enhancer binding 82.3 6.3 0.00022 29.3 7.5 36 85-120 39-74 (87)
76 2xdj_A Uncharacterized protein 82.2 13 0.00043 27.3 9.7 9 42-50 5-13 (83)
77 4etp_A Kinesin-like protein KA 82.0 4 0.00014 36.9 7.6 46 87-132 15-60 (403)
78 3mq9_A Bone marrow stromal ant 81.9 26 0.0009 30.7 13.7 33 83-115 437-469 (471)
79 3efg_A Protein SLYX homolog; x 81.8 5.4 0.00019 28.9 6.9 33 99-131 31-63 (78)
80 3u1c_A Tropomyosin alpha-1 cha 81.5 14 0.00049 27.4 11.2 42 40-81 6-47 (101)
81 3cve_A Homer protein homolog 1 80.8 14 0.00047 26.8 10.1 46 55-104 5-50 (72)
82 3q8t_A Beclin-1; autophagy, AT 80.7 15 0.00052 27.2 12.3 29 88-116 66-94 (96)
83 2xdj_A Uncharacterized protein 80.6 15 0.0005 27.0 8.9 41 40-80 24-64 (83)
84 1yf2_A Type I restriction-modi 79.8 3.3 0.00011 34.4 5.8 39 88-126 378-416 (425)
85 1t2k_D Cyclic-AMP-dependent tr 79.8 7.8 0.00027 26.2 6.8 39 61-103 19-57 (61)
86 4dci_A Uncharacterized protein 78.7 17 0.00057 29.5 9.5 63 62-128 27-102 (150)
87 3etw_A Adhesin A; antiparallel 77.9 23 0.0008 27.8 13.0 29 92-120 78-106 (119)
88 2jee_A YIIU; FTSZ, septum, coi 77.6 18 0.00063 26.8 8.7 31 86-116 31-61 (81)
89 3htk_A Structural maintenance 77.1 13 0.00045 24.5 7.6 47 46-96 8-54 (60)
90 3m91_A Proteasome-associated A 76.5 12 0.00041 25.5 6.8 33 65-101 17-49 (51)
91 1yf2_A Type I restriction-modi 76.0 4.9 0.00017 33.3 5.8 40 88-127 168-207 (425)
92 4emc_A Monopolin complex subun 76.0 7.5 0.00026 33.0 6.9 57 54-114 10-66 (190)
93 3swf_A CGMP-gated cation chann 75.9 14 0.00046 27.2 7.4 52 67-125 3-54 (74)
94 2ocy_A RAB guanine nucleotide 75.9 21 0.00073 29.0 9.4 26 28-54 20-45 (154)
95 2efr_A General control protein 75.9 25 0.00086 28.5 9.8 33 48-80 26-58 (155)
96 2eqb_B RAB guanine nucleotide 75.6 18 0.0006 27.7 8.3 50 50-103 12-61 (97)
97 1gu4_A CAAT/enhancer binding p 75.4 10 0.00035 27.6 6.7 33 86-118 40-72 (78)
98 1gd2_E Transcription factor PA 75.3 16 0.00056 26.0 7.7 39 42-80 28-66 (70)
99 2oqq_A Transcription factor HY 75.2 5.5 0.00019 26.6 4.7 21 60-80 13-33 (42)
100 2gkw_A TNF receptor-associated 75.0 4.7 0.00016 32.1 5.3 33 46-78 3-35 (192)
101 2wt7_A Proto-oncogene protein 74.3 15 0.00053 25.0 7.1 40 61-104 20-59 (63)
102 3oja_A Leucine-rich immune mol 74.1 46 0.0016 29.3 12.1 58 54-111 414-471 (487)
103 3u59_A Tropomyosin beta chain; 73.5 25 0.00084 25.9 12.2 42 40-81 6-47 (101)
104 3kqg_A Langerin, C-type lectin 73.5 6.2 0.00021 30.0 5.4 31 46-80 2-32 (182)
105 3ol1_A Vimentin; structural ge 73.4 28 0.00095 26.5 12.2 21 98-118 85-105 (119)
106 2w83_C C-JUN-amino-terminal ki 73.0 8.5 0.00029 28.5 5.8 46 35-80 29-74 (77)
107 1deq_A Fibrinogen (alpha chain 72.9 30 0.001 32.2 10.7 19 37-55 61-79 (390)
108 2oqq_A Transcription factor HY 72.5 15 0.0005 24.5 6.3 36 67-106 6-41 (42)
109 2lw1_A ABC transporter ATP-bin 72.1 24 0.00084 25.3 8.5 19 42-60 28-46 (89)
110 1ydx_A Type I restriction enzy 72.0 6.8 0.00023 33.1 5.8 40 87-126 353-392 (406)
111 3swy_A Cyclic nucleotide-gated 71.8 20 0.00067 24.0 7.2 43 68-117 2-44 (46)
112 3m48_A General control protein 71.5 5.2 0.00018 25.5 3.7 27 83-109 1-27 (33)
113 2no2_A HIP-I, huntingtin-inter 71.2 31 0.0011 26.1 13.6 36 89-124 68-103 (107)
114 3u06_A Protein claret segregat 71.1 13 0.00045 33.8 7.9 48 86-133 14-61 (412)
115 1d7m_A Cortexillin I; coiled-c 71.1 33 0.0011 26.4 12.6 42 35-76 17-58 (101)
116 3e98_A GAF domain of unknown f 71.0 18 0.00062 30.6 8.3 91 15-132 33-135 (252)
117 3vkg_A Dynein heavy chain, cyt 70.9 51 0.0018 37.7 13.7 9 122-130 2078-2086(3245)
118 3he4_A Synzip6; heterodimeric 70.8 2.6 8.8E-05 29.2 2.4 28 87-114 29-56 (56)
119 3m91_A Proteasome-associated A 70.8 19 0.00063 24.5 6.7 30 86-115 20-49 (51)
120 2p22_A Suppressor protein STP2 70.5 22 0.00074 29.5 8.3 34 86-119 60-93 (174)
121 3ghg_A Fibrinogen alpha chain; 70.4 35 0.0012 33.1 10.8 15 101-115 136-150 (562)
122 1m1j_A Fibrinogen alpha subuni 70.0 64 0.0022 30.8 12.3 80 37-116 59-152 (491)
123 3m0d_C TNF receptor-associated 69.8 19 0.00067 24.8 6.8 46 33-79 18-63 (65)
124 1lwu_C Fibrinogen gamma chain; 69.6 7.9 0.00027 34.6 6.0 36 43-78 19-54 (323)
125 2hy6_A General control protein 69.5 7.3 0.00025 25.0 4.1 28 83-110 2-29 (34)
126 3fpp_A Macrolide-specific effl 69.4 36 0.0012 28.3 9.6 17 45-61 71-87 (341)
127 3qne_A Seryl-tRNA synthetase, 69.3 27 0.00092 32.8 9.7 61 67-128 50-110 (485)
128 4dk0_A Putative MACA; alpha-ha 69.0 23 0.00077 29.8 8.4 15 46-60 73-87 (369)
129 3s4r_A Vimentin; alpha-helix, 68.4 33 0.0011 25.3 9.5 60 44-110 31-91 (93)
130 4dyl_A Tyrosine-protein kinase 68.3 36 0.0012 30.1 10.0 88 37-129 303-392 (406)
131 2dq0_A Seryl-tRNA synthetase; 67.9 32 0.0011 31.6 9.7 66 62-128 43-108 (455)
132 3c3g_A Alpha/beta peptide with 67.9 6.7 0.00023 25.0 3.7 27 83-109 1-27 (33)
133 1uo4_A General control protein 67.9 6.9 0.00024 25.1 3.7 27 83-109 2-28 (34)
134 3m0a_A TNF receptor-associated 67.5 26 0.00087 23.7 7.3 38 41-78 24-61 (66)
135 1jnm_A Proto-oncogene C-JUN; B 66.8 8.7 0.0003 26.1 4.4 37 61-101 19-55 (62)
136 3u06_A Protein claret segregat 66.5 15 0.00053 33.3 7.3 55 45-110 5-59 (412)
137 2oxj_A Hybrid alpha/beta pepti 66.2 7.5 0.00026 24.9 3.7 27 83-109 2-28 (34)
138 2wvr_A Geminin; DNA replicatio 66.2 43 0.0015 28.8 9.5 54 56-110 107-160 (209)
139 1hjb_A Ccaat/enhancer binding 66.0 16 0.00056 27.0 6.1 22 39-60 39-60 (87)
140 3c3f_A Alpha/beta peptide with 66.0 7.7 0.00026 24.9 3.7 27 83-109 2-28 (34)
141 3bas_A Myosin heavy chain, str 65.8 35 0.0012 24.7 10.2 60 58-121 15-74 (89)
142 1ydx_A Type I restriction enzy 65.5 11 0.00038 31.8 5.8 39 88-126 166-204 (406)
143 3ibp_A Chromosome partition pr 65.0 50 0.0017 29.7 10.1 22 93-114 80-101 (302)
144 3he5_A Synzip1; heterodimeric 65.0 27 0.00091 23.6 6.4 35 43-77 10-44 (49)
145 3thf_A Protein shroom; coiled- 65.0 49 0.0017 28.0 9.5 57 65-122 71-127 (190)
146 3efg_A Protein SLYX homolog; x 64.9 17 0.00059 26.2 5.9 50 64-117 14-63 (78)
147 2lw1_A ABC transporter ATP-bin 64.7 36 0.0012 24.4 7.8 23 59-81 24-46 (89)
148 2r2v_A GCN4 leucine zipper; co 64.6 9 0.00031 24.5 3.8 27 83-109 2-28 (34)
149 3mov_A Lamin-B1; LMNB1, B-type 64.2 16 0.00055 27.2 5.8 39 84-122 39-77 (95)
150 1dh3_A Transcription factor CR 64.0 27 0.00092 23.5 6.4 33 62-112 20-52 (55)
151 3m9b_A Proteasome-associated A 63.6 9.7 0.00033 33.4 5.1 43 82-124 54-96 (251)
152 2wq1_A General control protein 63.5 9.2 0.00031 24.4 3.7 26 84-109 2-27 (33)
153 1fzc_C Fibrin; blood coagulati 63.5 6.6 0.00023 35.1 4.2 40 41-80 9-48 (319)
154 4b6x_A AVRRPS4, avirulence pro 62.7 36 0.0012 25.7 7.5 57 53-109 25-89 (90)
155 1kd8_A GABH AIV, GCN4 acid bas 62.5 8.9 0.0003 24.8 3.5 28 84-111 3-30 (36)
156 1zxa_A CGMP-dependent protein 62.1 9.5 0.00033 27.4 4.0 16 55-70 16-31 (67)
157 1wlq_A Geminin; coiled-coil; 2 61.6 48 0.0016 24.8 8.5 51 57-108 31-81 (83)
158 3swk_A Vimentin; cytoskeleton, 61.4 44 0.0015 24.2 9.4 14 100-113 67-80 (86)
159 3mq7_A Bone marrow stromal ant 60.1 63 0.0022 25.7 11.4 49 52-104 55-107 (121)
160 2w6a_A ARF GTPase-activating p 60.1 38 0.0013 24.2 6.8 34 84-117 22-55 (63)
161 1m1j_C Fibrinogen gamma chain; 59.8 87 0.003 28.8 11.0 32 40-71 35-66 (409)
162 4aj5_1 SKA3, spindle and kinet 59.7 58 0.002 25.1 11.3 73 46-118 16-96 (101)
163 2akf_A Coronin-1A; coiled coil 59.1 13 0.00046 23.3 3.8 25 93-117 3-27 (32)
164 4afl_A P29ING4, inhibitor of g 59.1 49 0.0017 24.0 10.7 76 41-116 9-100 (104)
165 2bni_A General control protein 58.8 13 0.00044 23.8 3.7 27 83-109 2-28 (34)
166 1fxk_C Protein (prefoldin); ar 58.7 26 0.00089 26.2 6.2 38 40-77 92-129 (133)
167 2xv5_A Lamin-A/C; structural p 58.7 47 0.0016 23.8 7.7 44 65-112 6-49 (74)
168 3plt_A Sphingolipid long chain 58.4 91 0.0031 27.0 12.3 41 41-81 67-107 (234)
169 4h22_A Leucine-rich repeat fli 58.2 62 0.0021 25.0 9.4 22 50-71 30-51 (103)
170 1wle_A Seryl-tRNA synthetase; 58.1 1.2E+02 0.0041 28.3 12.1 65 63-128 83-155 (501)
171 2cly_A ATP synthase B chain, m 58.1 86 0.0029 26.5 10.8 50 48-97 82-137 (214)
172 2d4y_A HAP1, flagellar HOOK-as 57.9 1E+02 0.0034 27.6 10.9 87 19-108 56-148 (463)
173 3iox_A AGI/II, PA; alpha helix 57.9 1.3E+02 0.0045 28.7 14.9 67 29-97 15-81 (497)
174 3ol1_A Vimentin; structural ge 57.8 59 0.002 24.6 8.1 7 48-54 39-45 (119)
175 1gk4_A Vimentin; intermediate 57.7 49 0.0017 23.6 9.5 41 82-122 26-66 (84)
176 3oja_A Leucine-rich immune mol 57.5 1E+02 0.0034 27.1 13.7 43 25-68 350-392 (487)
177 3iv1_A Tumor susceptibility ge 57.3 55 0.0019 24.0 9.8 60 53-116 14-73 (78)
178 2v4h_A NF-kappa-B essential mo 57.3 44 0.0015 26.1 7.4 30 51-80 25-54 (110)
179 1kd8_B GABH BLL, GCN4 acid bas 57.1 23 0.00078 22.9 4.7 13 44-56 2-14 (36)
180 1ca9_A TRAF2, protein (TNF rec 57.1 16 0.00054 28.7 5.0 32 46-77 6-37 (192)
181 3ghg_B Fibrinogen beta chain; 57.1 1E+02 0.0035 29.1 11.1 88 40-127 92-194 (461)
182 4h8s_A DCC-interacting protein 56.7 35 0.0012 29.7 7.5 21 41-61 42-62 (407)
183 1zhc_A Hypothetical protein HP 56.7 21 0.0007 25.5 5.1 61 54-115 7-70 (76)
184 3oa7_A Head morphogenesis prot 56.5 25 0.00084 30.2 6.3 55 61-119 27-81 (206)
185 2yy0_A C-MYC-binding protein; 56.4 25 0.00086 23.7 5.2 27 50-76 19-45 (53)
186 2dgc_A Protein (GCN4); basic d 56.4 18 0.00062 25.0 4.6 34 61-112 27-60 (63)
187 3viq_B Mating-type switching p 56.4 31 0.0011 25.7 6.1 64 46-115 4-67 (85)
188 2no2_A HIP-I, huntingtin-inter 56.2 63 0.0022 24.4 13.7 65 53-117 18-82 (107)
189 2xnx_M M protein, M1-BC1; cell 56.2 81 0.0028 25.7 9.1 32 86-117 77-108 (146)
190 1gu4_A CAAT/enhancer binding p 56.1 17 0.00058 26.4 4.6 17 40-56 40-56 (78)
191 2qyw_A Vesicle transport throu 56.1 58 0.002 24.0 9.5 20 97-116 79-98 (102)
192 3ghg_C Fibrinogen gamma chain; 56.0 38 0.0013 31.3 8.0 76 40-115 35-117 (411)
193 1dh3_A Transcription factor CR 55.8 43 0.0015 22.4 7.2 12 45-56 24-35 (55)
194 2wvr_A Geminin; DNA replicatio 55.3 42 0.0014 28.8 7.6 36 86-125 126-161 (209)
195 3q8t_A Beclin-1; autophagy, AT 55.0 61 0.0021 23.9 11.7 65 43-111 11-75 (96)
196 3c9i_A Tail needle protein GP2 54.9 1.1E+02 0.0037 26.7 10.6 19 19-37 28-46 (242)
197 2w6b_A RHO guanine nucleotide 54.6 52 0.0018 23.0 6.9 42 86-127 14-55 (56)
198 2e7s_A RAB guanine nucleotide 53.7 17 0.00059 29.2 4.7 85 40-128 36-124 (135)
199 2aze_B Transcription factor E2 53.6 21 0.00073 27.0 5.0 32 41-72 4-35 (106)
200 3he5_B Synzip2; heterodimeric 53.5 37 0.0013 23.1 5.6 29 89-117 17-45 (52)
201 1nfn_A Apolipoprotein E3; lipi 53.5 50 0.0017 26.8 7.5 26 99-124 135-161 (191)
202 2i1j_A Moesin; FERM, coiled-co 52.6 8.3 0.00028 36.4 3.1 40 40-79 339-378 (575)
203 1kd8_B GABH BLL, GCN4 acid bas 52.0 23 0.0008 22.9 4.2 28 83-110 2-29 (36)
204 1gk6_A Vimentin; intermediate 51.8 40 0.0014 22.8 5.7 40 68-111 4-43 (59)
205 2ocy_A RAB guanine nucleotide 51.6 96 0.0033 25.2 13.7 20 42-61 50-69 (154)
206 3bbp_D GRIP and coiled-coil do 51.6 11 0.00038 27.6 2.9 31 82-112 36-66 (71)
207 2fcw_A Alpha-2-macroglobulin r 51.5 84 0.0029 24.5 11.5 72 49-124 23-103 (109)
208 2q13_A DCC-interacting protein 51.1 77 0.0026 27.3 8.8 21 41-61 19-39 (385)
209 3m48_A General control protein 51.0 21 0.00073 22.6 3.8 12 44-55 1-12 (33)
210 2ke4_A CDC42-interacting prote 50.5 70 0.0024 23.9 7.4 23 94-116 67-89 (98)
211 1vcs_A Vesicle transport throu 50.2 42 0.0014 24.8 6.1 54 60-117 34-88 (102)
212 3lss_A Seryl-tRNA synthetase; 50.1 1.6E+02 0.0056 27.4 12.0 40 89-128 99-143 (484)
213 3d5a_X RF1, peptide chain rele 49.9 1.2E+02 0.0042 27.5 10.1 82 44-125 4-99 (354)
214 2wt7_B Transcription factor MA 49.7 51 0.0017 24.7 6.4 36 64-103 48-83 (90)
215 1ci6_A Transcription factor AT 49.6 59 0.002 22.2 6.8 36 62-101 21-56 (63)
216 3mud_A DNA repair protein XRCC 49.4 76 0.0026 26.4 8.1 41 53-97 124-164 (175)
217 1f5n_A Interferon-induced guan 49.3 62 0.0021 30.8 8.5 22 59-80 482-503 (592)
218 1ztm_A Fusion glycoprotein; fu 48.8 55 0.0019 31.1 8.0 77 30-116 102-180 (490)
219 4fla_A Regulation of nuclear P 48.5 1E+02 0.0035 24.6 9.4 19 52-70 88-106 (152)
220 1zme_C Proline utilization tra 48.4 9.2 0.00031 25.2 2.0 22 40-61 48-69 (70)
221 1gk6_A Vimentin; intermediate 48.0 61 0.0021 21.9 7.1 41 41-81 5-45 (59)
222 2zdi_C Prefoldin subunit alpha 47.8 23 0.0008 27.3 4.5 39 40-78 102-140 (151)
223 1bg1_A Protein (transcription 47.8 77 0.0026 30.7 8.9 40 41-80 11-50 (596)
224 4h22_A Leucine-rich repeat fli 47.8 94 0.0032 24.0 8.0 55 57-115 19-77 (103)
225 3rrk_A V-type ATPase 116 kDa s 46.8 1.1E+02 0.0037 26.0 8.9 20 99-118 258-277 (357)
226 1kd8_A GABH AIV, GCN4 acid bas 46.2 43 0.0015 21.6 4.7 12 44-55 2-13 (36)
227 4b4t_K 26S protease regulatory 46.0 35 0.0012 31.0 6.1 35 83-117 50-84 (428)
228 3trt_A Vimentin; cytoskeleton, 45.9 70 0.0024 21.9 6.6 9 103-111 63-71 (77)
229 2yy0_A C-MYC-binding protein; 45.4 37 0.0013 22.9 4.6 27 89-115 19-45 (53)
230 3cvf_A Homer-3, homer protein 45.0 89 0.003 22.9 9.4 40 42-81 12-51 (79)
231 2w6a_A ARF GTPase-activating p 45.0 82 0.0028 22.5 8.0 45 54-102 17-61 (63)
232 1zxa_A CGMP-dependent protein 45.0 32 0.0011 24.6 4.5 33 49-81 24-56 (67)
233 2q12_A DIP13 alpha, DCC-intera 44.9 1.3E+02 0.0043 24.6 10.3 86 41-127 19-108 (265)
234 1yke_B RNA polymerase II holoe 44.6 1.2E+02 0.004 24.2 9.4 29 28-56 53-81 (151)
235 1joc_A EEA1, early endosomal a 44.6 71 0.0024 24.3 6.7 28 39-66 7-34 (125)
236 3okg_A Restriction endonucleas 44.6 42 0.0014 27.9 5.8 16 111-126 392-407 (412)
237 2wq1_A General control protein 44.5 35 0.0012 21.7 4.1 12 44-55 1-12 (33)
238 3qh9_A Liprin-beta-2; coiled-c 44.1 96 0.0033 23.0 8.1 45 65-109 27-74 (81)
239 4dac_A Computationally designe 44.1 17 0.00058 22.1 2.5 18 100-117 5-22 (28)
240 2vrs_A Sigma-C capsid protein; 44.0 29 0.001 29.8 4.8 29 89-117 11-39 (211)
241 2dgc_A Protein (GCN4); basic d 43.8 42 0.0014 23.1 4.9 16 45-60 32-47 (63)
242 2dq3_A Seryl-tRNA synthetase; 43.7 34 0.0012 30.9 5.5 62 67-129 47-108 (425)
243 1m1j_C Fibrinogen gamma chain; 43.5 2E+02 0.0067 26.4 12.7 17 44-60 49-65 (409)
244 1fmh_A General control protein 42.9 38 0.0013 21.2 4.0 22 58-79 9-30 (33)
245 2pms_C Pneumococcal surface pr 42.7 37 0.0013 27.0 4.9 25 92-116 64-88 (125)
246 2zxx_A Geminin; coiled-coil, c 42.5 99 0.0034 22.7 7.8 17 64-80 34-50 (79)
247 3ter_A Mammalian stromal inter 42.2 52 0.0018 26.5 5.8 29 82-110 59-87 (136)
248 3k29_A Putative uncharacterize 42.2 1.5E+02 0.0051 24.7 16.2 60 22-81 2-65 (169)
249 2yko_A LINE-1 ORF1P; RNA-bindi 42.1 51 0.0017 28.5 6.1 10 115-124 71-80 (233)
250 1uii_A Geminin; human, DNA rep 42.0 77 0.0026 23.6 6.3 31 86-116 43-73 (83)
251 3hhm_B NISH2 P85alpha; PI3KCA, 42.0 96 0.0033 27.9 8.2 41 40-80 209-249 (373)
252 1y1u_A Signal transducer and a 41.5 2E+02 0.0068 27.7 10.7 45 37-81 6-50 (585)
253 3c9i_A Tail needle protein GP2 41.5 1.8E+02 0.0061 25.4 14.5 45 72-116 99-146 (242)
254 2zvf_A Alanyl-tRNA synthetase; 41.3 39 0.0013 25.9 4.8 30 86-115 29-58 (171)
255 1ses_A Seryl-tRNA synthetase; 41.3 1.1E+02 0.0038 27.5 8.5 40 89-128 64-103 (421)
256 2olt_A Hypothetical protein; s 41.2 1.3E+02 0.0045 23.8 10.7 16 17-32 6-21 (227)
257 1gmj_A ATPase inhibitor; coile 41.0 1.1E+02 0.0037 22.8 9.0 25 86-110 55-79 (84)
258 1ytz_T Troponin T; muscle, THI 41.0 48 0.0016 25.4 5.2 37 40-76 53-89 (107)
259 1nkp_B MAX protein, MYC proto- 40.7 86 0.0029 21.9 6.2 10 48-57 17-26 (83)
260 3he4_A Synzip6; heterodimeric 40.5 39 0.0013 23.3 4.1 27 91-117 26-52 (56)
261 1ykh_B RNA polymerase II holoe 40.4 1.3E+02 0.0043 23.3 9.5 77 27-112 52-129 (132)
262 1wlq_A Geminin; coiled-coil; 2 40.4 55 0.0019 24.4 5.3 31 86-116 35-65 (83)
263 2ke4_A CDC42-interacting prote 39.1 1.2E+02 0.0041 22.6 8.8 34 92-125 58-91 (98)
264 1wle_A Seryl-tRNA synthetase; 39.0 2.4E+02 0.0083 26.2 11.3 35 97-131 117-151 (501)
265 2zxx_A Geminin; coiled-coil, c 39.0 82 0.0028 23.2 6.0 23 86-108 31-53 (79)
266 1m1j_B Fibrinogen beta chain; 38.9 2.5E+02 0.0085 26.3 13.3 41 41-81 98-138 (464)
267 2yo3_A General control protein 38.6 63 0.0022 28.6 6.2 39 43-81 216-254 (268)
268 1t6f_A Geminin; coiled-coil, c 38.4 55 0.0019 21.2 4.4 22 51-72 8-29 (37)
269 1lq7_A Alpha3W; three helix bu 38.2 35 0.0012 24.2 3.7 12 44-55 3-14 (67)
270 2ve7_A Kinetochore protein HEC 38.1 39 0.0013 29.5 4.8 45 37-81 151-202 (315)
271 3tq2_A KE1; parallel three hel 37.9 77 0.0026 20.1 4.9 31 45-75 3-33 (36)
272 3m0a_A TNF receptor-associated 37.9 89 0.0031 20.9 9.4 60 48-111 3-62 (66)
273 3fx0_A NF-kappa-B essential mo 37.7 21 0.00072 27.4 2.7 55 49-107 37-94 (96)
274 1gqe_A Release factor 2, RF2; 37.6 1.8E+02 0.006 26.5 9.2 86 32-117 14-115 (365)
275 1uo4_A General control protein 37.5 49 0.0017 21.1 3.9 12 44-55 2-13 (34)
276 2aze_A Transcription factor DP 37.5 83 0.0028 25.7 6.4 34 43-76 5-38 (155)
277 2wuj_A Septum site-determining 37.5 30 0.001 23.3 3.2 26 86-111 31-56 (57)
278 2ve7_A Kinetochore protein HEC 37.4 64 0.0022 28.1 6.1 25 46-70 181-205 (315)
279 1bf5_A Signal transducer and a 37.4 2.3E+02 0.0079 27.4 10.4 33 40-72 13-45 (575)
280 3sjb_C Golgi to ER traffic pro 37.2 1.3E+02 0.0046 22.7 7.3 62 40-108 20-86 (93)
281 3kpe_A Fusion glycoprotein F0; 37.1 98 0.0033 21.1 6.9 35 47-81 1-35 (51)
282 2avr_X Adhesion A; antiparalle 37.0 1.5E+02 0.0052 23.3 9.7 23 40-62 6-28 (119)
283 1nkp_B MAX protein, MYC proto- 37.0 50 0.0017 23.1 4.5 28 88-115 46-73 (83)
284 3l4q_C Phosphatidylinositol 3- 36.9 1.8E+02 0.006 24.0 9.7 57 40-107 100-156 (170)
285 3ra3_B P2F; coiled coil domain 36.8 29 0.00098 21.1 2.7 21 53-73 3-23 (28)
286 1ik9_A DNA repair protein XRCC 36.3 1.9E+02 0.0064 24.1 13.7 71 45-128 134-204 (213)
287 3cl3_D NF-kappa-B essential mo 36.3 85 0.0029 25.2 6.1 39 40-81 34-72 (130)
288 3a5t_A Transcription factor MA 36.3 2.4 8.4E-05 32.8 -2.7 23 8-30 2-24 (107)
289 1f5n_A Interferon-induced guan 36.2 2.4E+02 0.0081 26.8 10.2 15 102-116 566-580 (592)
290 2dq0_A Seryl-tRNA synthetase; 36.2 1.5E+02 0.0051 27.1 8.6 34 98-131 71-104 (455)
291 2p22_C Protein SRN2; endosome, 36.2 1.8E+02 0.0062 23.9 10.1 27 100-126 125-151 (192)
292 3mtu_E Head morphogenesis prot 35.7 1.3E+02 0.0044 22.1 7.8 45 61-108 27-74 (77)
293 1gqe_A Release factor 2, RF2; 35.0 2.6E+02 0.0089 25.4 12.0 15 43-57 9-23 (365)
294 1nlw_A MAD protein, MAX dimeri 34.9 1.1E+02 0.0038 21.7 6.1 21 92-112 57-77 (80)
295 2zdi_C Prefoldin subunit alpha 34.8 1.5E+02 0.0052 22.6 8.2 40 88-127 97-136 (151)
296 4e61_A Protein BIM1; EB1-like 34.4 1.1E+02 0.0036 23.7 6.2 44 48-91 9-55 (106)
297 1wlo_A SUFE protein; structura 34.3 20 0.00069 28.0 2.2 46 11-61 87-132 (136)
298 1yvl_A Signal transducer and a 33.9 2.2E+02 0.0074 28.1 9.7 38 41-78 135-172 (683)
299 1ni7_A ER75, hypothetical prot 33.9 6.4 0.00022 31.7 -0.8 50 11-64 100-149 (155)
300 2zqm_A Prefoldin beta subunit 33.9 1.3E+02 0.0044 21.5 11.3 32 86-117 74-105 (117)
301 1j1d_C Troponin I, TNI; THIN f 33.7 84 0.0029 25.0 5.7 39 40-78 69-107 (133)
302 3fpp_A Macrolide-specific effl 33.6 2E+02 0.0069 23.7 9.1 8 189-196 247-254 (341)
303 2xus_A Breast cancer metastasi 33.6 68 0.0023 21.7 4.4 29 44-81 14-42 (49)
304 1fxk_C Protein (prefoldin); ar 33.2 1.5E+02 0.005 22.0 11.9 38 91-128 90-127 (133)
305 3c3f_A Alpha/beta peptide with 33.0 68 0.0023 20.4 4.1 11 44-54 2-12 (34)
306 2xzr_A Immunoglobulin-binding 32.5 1.8E+02 0.0061 22.7 12.5 79 40-118 17-105 (114)
307 1pl5_A Regulatory protein SIR4 32.4 84 0.0029 25.0 5.5 43 27-69 73-128 (142)
308 2y7c_A Type-1 restriction enzy 32.4 2.2E+02 0.0075 23.8 8.4 22 14-36 360-385 (464)
309 1deq_A Fibrinogen (alpha chain 32.2 2.2E+02 0.0075 26.4 9.0 24 90-113 135-158 (390)
310 1ez3_A Syntaxin-1A; three heli 32.0 1.4E+02 0.0049 21.5 8.1 21 40-60 9-29 (127)
311 2rr9_C Putative uncharacterize 31.9 1.2E+02 0.004 20.4 5.3 9 27-35 4-12 (46)
312 4ad8_A DNA repair protein RECN 31.7 2.2E+02 0.0074 25.5 8.8 9 25-33 162-170 (517)
313 2k48_A Nucleoprotein; viral pr 31.5 1.8E+02 0.0063 22.6 8.2 16 66-81 37-52 (107)
314 3cve_A Homer protein homolog 1 31.4 1.5E+02 0.005 21.4 9.9 40 42-81 6-45 (72)
315 2b5u_A Colicin E3; high resolu 31.3 2.4E+02 0.0081 27.3 9.3 62 20-81 289-352 (551)
316 2j5u_A MREC protein; bacterial 31.2 26 0.00089 29.6 2.5 33 86-118 23-55 (255)
317 1x79_B RAB GTPase binding effe 31.2 1.8E+02 0.0063 22.5 12.6 32 50-81 45-76 (112)
318 2lf0_A Uncharacterized protein 31.1 1.3E+02 0.0045 23.9 6.4 48 65-112 11-67 (123)
319 1nyh_A Regulatory protein SIR4 31.0 1E+02 0.0034 25.1 5.8 43 27-69 97-152 (166)
320 2y7c_A Type-1 restriction enzy 30.9 94 0.0032 26.1 5.9 21 106-126 184-204 (464)
321 4adz_A CSOR; transcription, co 30.8 2.1E+02 0.0071 22.9 8.8 43 38-81 51-93 (136)
322 4e61_A Protein BIM1; EB1-like 30.5 1.8E+02 0.0063 22.3 9.9 28 53-80 7-34 (106)
323 2dnx_A Syntaxin-12; snare, HAB 30.5 1.8E+02 0.006 22.1 14.3 56 25-80 8-74 (130)
324 1no4_A Late, head morphogenesi 30.3 1.8E+02 0.006 22.0 8.1 51 60-114 22-72 (97)
325 1s94_A S-syntaxin; three helix 30.2 1.9E+02 0.0065 22.4 8.1 20 40-59 40-59 (180)
326 1avy_A Fibritin, gpwac M; bact 30.1 1.1E+02 0.0036 22.5 5.2 18 43-60 8-25 (74)
327 3swf_A CGMP-gated cation chann 30.0 1.6E+02 0.0055 21.4 6.6 18 42-59 6-23 (74)
328 3q0x_A Centriole protein; cent 30.0 1.2E+02 0.0043 25.8 6.6 52 32-83 169-227 (228)
329 2xv5_A Lamin-A/C; structural p 29.9 1.5E+02 0.0052 21.1 8.0 26 48-73 3-28 (74)
330 2qm4_A Non-homologous END-join 29.7 55 0.0019 27.9 4.3 39 32-71 133-171 (235)
331 1rtm_1 Mannose-binding protein 29.4 33 0.0011 25.1 2.6 19 41-59 2-20 (149)
332 1uii_A Geminin; human, DNA rep 29.3 1.8E+02 0.006 21.7 6.7 23 58-80 40-62 (83)
333 1t3j_A Mitofusin 1; coiled coi 29.1 1.9E+02 0.0064 21.9 8.2 18 63-80 53-70 (96)
334 2d4y_A HAP1, flagellar HOOK-as 29.0 1.9E+02 0.0064 25.9 7.9 58 55-115 65-122 (463)
335 2wg5_A General control protein 28.9 56 0.0019 24.4 3.8 17 93-109 18-34 (109)
336 3qne_A Seryl-tRNA synthetase, 28.8 3.6E+02 0.012 25.2 10.1 33 99-131 74-106 (485)
337 3qwe_A GMIP, GEM-interacting p 28.7 2.9E+02 0.01 24.0 9.3 64 59-124 172-235 (279)
338 3a7o_A Autophagy protein 16; c 28.6 1.7E+02 0.006 21.4 8.9 43 37-79 19-61 (75)
339 3t97_B Nuclear pore complex pr 28.6 1.4E+02 0.0047 21.3 5.5 36 42-77 9-44 (65)
340 2er8_A Regulatory protein Leu3 28.4 57 0.002 21.5 3.4 16 65-80 50-65 (72)
341 1urq_A M-tomosyn isoform; tran 28.2 1.5E+02 0.005 20.4 8.0 42 40-81 8-49 (63)
342 3swy_A Cyclic nucleotide-gated 28.1 1.3E+02 0.0046 19.9 5.6 17 43-59 5-21 (46)
343 2gkw_A TNF receptor-associated 27.7 77 0.0026 25.0 4.6 13 68-80 4-16 (192)
344 2dq3_A Seryl-tRNA synthetase; 27.6 1.3E+02 0.0045 27.1 6.6 29 100-128 72-100 (425)
345 2qyw_A Vesicle transport throu 27.5 1.8E+02 0.0063 21.3 9.8 75 42-122 14-94 (102)
346 1bf5_A Signal transducer and a 27.3 4.3E+02 0.015 25.5 10.5 38 44-81 3-40 (575)
347 1zbt_A RF-1, peptide chain rel 27.0 1.1E+02 0.0036 28.1 5.9 23 100-122 91-114 (371)
348 1flk_A TNF receptor associated 26.9 65 0.0022 26.2 4.2 8 114-121 81-88 (228)
349 3t98_B Nucleoporin NUP58/NUP45 26.8 48 0.0016 24.7 3.0 20 39-58 61-80 (93)
350 1yke_B RNA polymerase II holoe 26.7 2.4E+02 0.0082 22.4 8.2 23 47-69 54-76 (151)
351 3lay_A Zinc resistance-associa 26.6 2.1E+02 0.0073 23.2 7.2 68 40-107 75-142 (175)
352 3tso_C RAB11 family-interactin 26.4 1.1E+02 0.0038 22.4 4.9 29 48-76 19-47 (75)
353 3q4f_C DNA repair protein XRCC 26.4 93 0.0032 26.3 5.0 22 82-103 161-182 (186)
354 3htk_A Structural maintenance 26.0 1.4E+02 0.0047 19.4 8.7 23 87-109 31-53 (60)
355 2p22_A Suppressor protein STP2 25.9 2.8E+02 0.0094 22.8 10.4 47 71-117 38-84 (174)
356 3pe0_A Plectin; cytoskeleton, 25.6 2.9E+02 0.0099 23.2 8.1 49 67-120 83-131 (283)
357 3tul_A Cell invasion protein S 25.6 2.8E+02 0.0096 22.8 8.1 24 58-81 70-93 (158)
358 3s9g_A Protein hexim1; cyclin 25.5 2.3E+02 0.008 21.9 8.8 41 83-123 45-85 (104)
359 3a1q_C Ubiquitin interaction m 25.5 1.5E+02 0.0053 19.7 5.3 9 27-35 7-15 (45)
360 3gp4_A Transcriptional regulat 25.4 2.2E+02 0.0076 21.6 9.2 13 27-39 43-55 (142)
361 4fi5_A Nucleoprotein; structur 25.2 2.5E+02 0.0084 22.0 7.9 24 66-89 24-50 (113)
362 1j1e_C Troponin I, TNI; THIN f 24.7 1.4E+02 0.0047 24.9 5.7 41 40-80 69-109 (180)
363 3rkg_A Magnesium transporter M 24.7 2.8E+02 0.0095 23.8 7.9 75 34-131 125-199 (261)
364 1ik9_A DNA repair protein XRCC 24.4 3.1E+02 0.01 22.8 12.1 88 24-112 117-209 (213)
365 3onj_A T-snare VTI1; helix, HA 24.2 2.1E+02 0.007 20.7 7.6 52 52-103 36-94 (97)
366 2oto_A M protein; helical coil 24.1 2.5E+02 0.0085 21.6 13.4 38 40-77 26-63 (155)
367 4e8u_A Putative uncharacterize 23.8 72 0.0025 26.3 3.8 22 52-73 150-171 (172)
368 3etw_A Adhesin A; antiparallel 23.7 2.6E+02 0.0089 21.8 9.7 20 39-58 5-24 (119)
369 3m0d_C TNF receptor-associated 23.7 1.8E+02 0.0061 19.8 9.0 14 65-78 7-20 (65)
370 3g0m_A Cysteine desulfuration 23.7 18 0.0006 28.6 0.1 45 11-59 93-137 (141)
371 1t6f_A Geminin; coiled-coil, c 23.5 1.6E+02 0.0053 19.1 5.1 12 86-97 4-15 (37)
372 3ck6_A Putative membrane trans 23.5 2.8E+02 0.0096 22.0 8.3 18 64-81 171-188 (252)
373 2ve7_C Kinetochore protein NUF 23.5 1.6E+02 0.0055 24.9 6.1 29 84-112 150-178 (250)
374 4efa_E V-type proton ATPase su 23.2 3E+02 0.01 22.2 14.3 41 82-122 84-124 (233)
375 2zqm_A Prefoldin beta subunit 22.9 2.1E+02 0.0071 20.3 12.6 40 88-127 69-112 (117)
376 1bg1_A Protein (transcription 22.9 3.1E+02 0.011 26.6 8.5 44 27-72 13-56 (596)
377 4g63_A Cytosolic IMP-GMP speci 22.7 68 0.0023 30.0 3.9 10 46-55 325-334 (470)
378 3ra3_A P1C; coiled coil domain 22.7 1.2E+02 0.004 18.4 3.6 24 93-116 4-27 (28)
379 2f1m_A Acriflavine resistance 22.6 2.9E+02 0.01 22.0 8.7 8 189-196 233-240 (277)
380 2iub_A CORA, divalent cation t 22.3 3.7E+02 0.013 23.0 9.3 42 40-81 192-238 (363)
381 1lrz_A FEMA, factor essential 22.3 2.6E+02 0.0088 24.4 7.3 49 41-89 252-307 (426)
382 2oto_A M protein; helical coil 22.2 2.7E+02 0.0093 21.4 11.7 20 40-59 33-52 (155)
383 1fzc_B Fibrin; blood coagulati 22.2 45 0.0016 29.6 2.5 26 101-126 35-60 (328)
384 2oa5_A Hypothetical protein BQ 22.1 2.6E+02 0.0088 21.8 6.5 20 41-60 13-32 (110)
385 3rrr_B Fusion glycoprotein F0; 22.0 4.7E+02 0.016 24.1 9.7 63 44-116 10-72 (374)
386 2ic9_A Nucleocapsid protein; h 21.8 2.7E+02 0.0091 21.2 7.9 24 66-89 7-33 (96)
387 2p01_A Alpha-2-macroglobulin r 21.7 4.5E+02 0.015 23.8 8.9 24 98-121 290-313 (323)
388 4ev6_A Magnesium transport pro 21.7 3.7E+02 0.013 22.8 8.7 40 42-81 170-214 (339)
389 2yko_A LINE-1 ORF1P; RNA-bindi 21.7 1.6E+02 0.0055 25.4 5.7 14 117-130 69-82 (233)
390 1ykh_B RNA polymerase II holoe 21.4 2.8E+02 0.0096 21.3 8.6 68 47-117 54-124 (132)
391 3mtu_A Tropomyosin alpha-1 cha 21.4 2.2E+02 0.0075 20.0 7.0 21 82-102 37-57 (75)
392 2v0o_A FCHO2, FCH domain only 21.4 3.1E+02 0.011 21.8 14.0 16 100-115 178-193 (276)
393 3trt_A Vimentin; cytoskeleton, 21.3 2E+02 0.0068 19.5 9.0 14 103-116 56-69 (77)
394 3g67_A Methyl-accepting chemot 21.2 3.5E+02 0.012 22.3 13.2 31 85-115 49-79 (213)
395 1zhc_A Hypothetical protein HP 21.2 70 0.0024 22.6 2.9 28 50-77 17-44 (76)
396 4ani_A Protein GRPE; chaperone 21.1 3.6E+02 0.012 22.6 7.7 47 65-118 60-106 (213)
397 4ew8_A Sensor protein DIVL; si 21.0 2.8E+02 0.0096 21.1 6.7 14 67-80 49-62 (268)
398 3kin_B Kinesin heavy chain; mo 21.0 1.6E+02 0.0055 22.2 5.1 45 37-81 61-113 (117)
399 3nr7_A DNA-binding protein H-N 21.0 2.5E+02 0.0085 20.5 7.1 22 45-66 26-47 (86)
400 3ni0_A Bone marrow stromal ant 20.9 2.9E+02 0.0098 21.2 11.1 65 48-116 23-87 (99)
401 1yvl_A Signal transducer and a 20.8 6.1E+02 0.021 24.9 10.5 44 27-72 137-180 (683)
402 1g5g_A Fusion protein; NDV, pa 20.8 1.1E+02 0.0039 28.9 5.0 77 30-116 96-174 (481)
403 3k8w_A Flagellin homolog; flag 20.6 4.6E+02 0.016 23.5 11.2 52 26-81 8-63 (326)
404 3rrk_A V-type ATPase 116 kDa s 20.6 2E+02 0.0067 24.4 6.1 9 115-123 161-169 (357)
405 3swk_A Vimentin; cytoskeleton, 20.5 2.4E+02 0.0083 20.2 9.3 16 98-113 44-59 (86)
406 2avr_X Adhesion A; antiparalle 20.4 3.1E+02 0.011 21.4 7.2 12 70-81 8-19 (119)
407 3ajw_A Flagellar FLIJ protein; 20.4 2.6E+02 0.0088 20.4 11.5 35 86-120 85-119 (150)
408 4etp_B Spindle POLE BODY-assoc 20.1 3.8E+02 0.013 24.4 8.1 48 58-109 11-58 (333)
409 2xhe_B Syntaxin1; exocytosis, 20.0 3.7E+02 0.013 22.2 12.1 93 28-120 45-156 (279)
No 1
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=97.07 E-value=0.02 Score=44.16 Aligned_cols=42 Identities=12% Similarity=0.173 Sum_probs=21.6
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (207)
Q Consensus 40 A~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~ 81 (207)
+|..+|..|+.++..+...+.+-...+..++.++..++..+.
T Consensus 3 ~~~~~~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~ 44 (284)
T 1c1g_A 3 AIKKKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELV 44 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555555555544444444443
No 2
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=97.00 E-value=0.035 Score=41.85 Aligned_cols=77 Identities=16% Similarity=0.212 Sum_probs=63.9
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 028596 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLE 116 (207)
Q Consensus 40 A~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~---~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDvaKLE 116 (207)
....|+..+|.++..+.+....++..|..|+.|+..++..|- .+|..+.+....-.+-...-...|..|||-+.-||
T Consensus 20 ~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek~~~~aE~ev~~L~RriqllE 99 (101)
T 3u1c_A 20 NALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEENAAKAESEVASLNRRIQLVE 99 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 566788899999999999999999999999999999999987 67777766665555556666678999999887776
No 3
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=96.67 E-value=0.029 Score=44.69 Aligned_cols=71 Identities=14% Similarity=0.212 Sum_probs=58.5
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028596 37 TSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRD 111 (207)
Q Consensus 37 ts~A~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~~sLa~TVKkL~RD 111 (207)
++.=++.-.-++..++..|++++.+++..|++|...+.++...+- .+.+++.+|.++++.|...+++|...
T Consensus 62 aALNiadEl~k~~~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e----~~~~e~~~l~~~~~~l~~~~~~le~~ 132 (138)
T 3hnw_A 62 MYLNIADDYFKAKKMADSLSLDIENKDKEIYDLKHELIAAQIKAE----SSAKEIKELKSEINKYQKNIVKLETE 132 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555677777788889999999999999999999988887776665 88888888888888888888888643
No 4
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=96.63 E-value=0.082 Score=39.51 Aligned_cols=77 Identities=16% Similarity=0.238 Sum_probs=63.1
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 028596 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLE 116 (207)
Q Consensus 40 A~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~---~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDvaKLE 116 (207)
...-|+..+|.++..+.+....++..|..|+.|+..++..+- .+|..+.+....-.+....-...|..|||-+.-||
T Consensus 20 ~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE~evasLnRriqllE 99 (101)
T 3u59_A 20 NAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAEAEVASLNRRIQLVE 99 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 566788889999999999999999999999999999999987 67777766666556666666778999999887664
No 5
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=96.44 E-value=0.036 Score=56.10 Aligned_cols=80 Identities=18% Similarity=0.318 Sum_probs=38.5
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 028596 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRK 120 (207)
Q Consensus 41 ~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDvaKLE~FKk 120 (207)
...+|.+||.|+..|+.++.+-..+..+|++++..+...|+.++....+++.+|..+.+.|...+.+.+.+.+ |.++.
T Consensus 982 ~~~~v~~L~~e~~~l~~~~~~~~ke~~~lee~~~~~~~~L~~kv~~L~~e~~~L~qq~~~l~~~~~~~~~~~~--~~~~~ 1059 (1080)
T 2dfs_A 982 ATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAKEIT--ETMEK 1059 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH
Confidence 3445555555555555555555555555555555555555444444444444444444444433333333222 23555
Q ss_pred HH
Q 028596 121 TL 122 (207)
Q Consensus 121 ~L 122 (207)
.+
T Consensus 1060 ~~ 1061 (1080)
T 2dfs_A 1060 KL 1061 (1080)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 6
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=96.03 E-value=0.076 Score=43.72 Aligned_cols=71 Identities=18% Similarity=0.216 Sum_probs=53.3
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhhHHH
Q 028596 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNT-VRKLQRDVSK 114 (207)
Q Consensus 40 A~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~~sLa~T-VKkL~RDvaK 114 (207)
.+.+-...|+.++..|...+.+|...+..|++-+.+|..++. .+.++..+|++||+.|... +++-+++-.+
T Consensus 72 ~L~~El~~l~~ki~dLeeel~eK~K~~e~l~DEl~aLqlq~n----~lE~kl~kLq~EN~~LV~RWM~rk~qEAe~ 143 (152)
T 3a7p_A 72 ILQKELKSKEQEIRRLKEVIALKNKNTERLNAALISGTIENN----VLQQKLSDLKKEHSQLVARWLKKTEKETEA 143 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666667777777777777888888888888888877776 8889999999999988765 4444555444
No 7
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=95.77 E-value=0.16 Score=37.45 Aligned_cols=69 Identities=20% Similarity=0.271 Sum_probs=60.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 028596 44 RVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDV 112 (207)
Q Consensus 44 RVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~---~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDv 112 (207)
-+..++.|+..|+..+..-.....+|+.+...|..+.. ..+..+.+.+.+|.+.+..|...++.|+..|
T Consensus 15 Em~~~eeel~~lke~l~k~e~~rkele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el~~rl 86 (89)
T 3bas_A 15 EMKEQLKQMDKMKEDLAKTERIKKELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARLKKLV 86 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45578999999999999888899999999988887766 4488999999999999999999999998765
No 8
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=95.23 E-value=0.021 Score=57.75 Aligned_cols=71 Identities=23% Similarity=0.299 Sum_probs=21.3
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 028596 45 VSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSKL 115 (207)
Q Consensus 45 Vs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~---~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDvaKL 115 (207)
..+||.++..|..+|.++.+...+|++++..++..+. ..|+...++..++.+|+..+.+.|+.|..++++|
T Consensus 923 ~~~LE~kl~eLq~rL~~~e~~n~~L~~~~~~~~~~~~~e~~~L~~~l~~le~~~~e~~~~~~~v~~L~~e~~~l 996 (1080)
T 2dfs_A 923 HIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKL 996 (1080)
T ss_dssp ----------------------------CHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888888888887777777777666655555444 4444444444455555555555555544444443
No 9
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=95.21 E-value=0.13 Score=40.41 Aligned_cols=64 Identities=19% Similarity=0.345 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 028596 49 ESEHSALRSQLAEKDS---RIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLE 116 (207)
Q Consensus 49 EsE~~~LR~~LaEKd~---~i~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDvaKLE 116 (207)
..++..|++.++.++. .|.-|+.++.-....+. .=+.+-++++.|+..|...+..|+|++.+|+
T Consensus 44 q~~idelk~ei~q~~~~lE~I~vLkaQv~IY~~DF~----aERadREkl~~eKe~L~~ql~~Lq~q~~~l~ 110 (110)
T 2v4h_A 44 QELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQ----AERHAREKLVEKKEYLQEQLEQLQREFNKLK 110 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc----cchhhHHHHHhHHHHHHHHHHHHHHHHHhcC
Confidence 3566677777766666 55555555555554444 5556678999999999999999999998873
No 10
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=95.05 E-value=0.7 Score=35.69 Aligned_cols=33 Identities=21% Similarity=0.402 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 028596 82 DKLGQAQADKERLSKENEALTNTVRKLQRDVSK 114 (207)
Q Consensus 82 ~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDvaK 114 (207)
+.+..+.+.+.+|...+..|...++-|+.++.-
T Consensus 62 ~~l~e~EE~~~~L~~~k~eLe~~l~el~~rlee 94 (129)
T 2fxo_A 62 DNLADAEERCDQLIKNKIQLEAKVKEMNKRLED 94 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444433
No 11
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=94.59 E-value=1 Score=36.80 Aligned_cols=78 Identities=22% Similarity=0.273 Sum_probs=60.2
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 028596 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLE 116 (207)
Q Consensus 40 A~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~---~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDvaKLE 116 (207)
.+..|...+|.+|..|..+|.+-+.....-+..|..|+..+- ++|.........+..+-+..-+.+..+.-++-.|+
T Consensus 67 kasqrEd~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~Kek~~~i~~eLd~tl~el~~~~~~~~~~~ 146 (155)
T 2efr_A 67 KYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKLKYKAISEEMKQLEDKVEELLSKNYHLE 146 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHH
Confidence 677899999999999999999998888888888888888877 77777777777777777766655555555555554
Q ss_pred H
Q 028596 117 V 117 (207)
Q Consensus 117 ~ 117 (207)
+
T Consensus 147 ~ 147 (155)
T 2efr_A 147 N 147 (155)
T ss_dssp H
T ss_pred H
Confidence 3
No 12
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=94.52 E-value=0.24 Score=44.59 Aligned_cols=40 Identities=15% Similarity=0.086 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccc
Q 028596 89 ADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLKD 128 (207)
Q Consensus 89 ee~~kL~kE~~sLa~TVKkL~RDvaKLE~FKk~LmqSLq~ 128 (207)
++..+|.+.-+.-..++..|.++++++..=.|+|++-+++
T Consensus 544 ~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~~ 583 (597)
T 3oja_B 544 QENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKNR 583 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred hhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3334444444444446677777777776666677766654
No 13
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1
Probab=94.46 E-value=0.64 Score=37.33 Aligned_cols=74 Identities=16% Similarity=0.223 Sum_probs=68.2
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 028596 39 IAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDV 112 (207)
Q Consensus 39 ~A~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~---~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDv 112 (207)
++.--|+..||.++...+....+.++...+...|+.-++..|. .|+..+...+..|..|...+.+.+|.|...-
T Consensus 48 ~~deEr~~~lE~qLkeak~~aeeadrKyeE~~RKl~~~E~dLeraeeRae~aE~k~~eLEeeL~~~~~nlKsLE~~e 124 (147)
T 2b9c_A 48 QKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAELEEELKTVTNNLKSLEDKV 124 (147)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhH
Confidence 4777899999999999999999999999999999999999999 9999999999999999999999999987544
No 14
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=94.45 E-value=0.8 Score=38.57 Aligned_cols=41 Identities=27% Similarity=0.368 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccc
Q 028596 88 QADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLKD 128 (207)
Q Consensus 88 ~ee~~kL~kE~~sLa~TVKkL~RDvaKLE~FKk~LmqSLq~ 128 (207)
..+...|..++..|...++.|...-.-||+=.|...-||.|
T Consensus 94 q~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD 134 (189)
T 2v71_A 94 EDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLED 134 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHH
Confidence 34444555555555555556655556666666666666554
No 15
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=94.39 E-value=0.3 Score=36.16 Aligned_cols=61 Identities=18% Similarity=0.192 Sum_probs=42.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028596 45 VSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQ 109 (207)
Q Consensus 45 Vs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~~sLa~TVKkL~ 109 (207)
-+.|+.-+..||..|.+|+.+|+.|++.+.---.. .....++..-|.=||+-|...+.+|.
T Consensus 13 ~~~~~~~l~~Lr~eL~~Ke~eI~~L~e~i~lk~kd----~ErLNDEiislNIENNlL~~rl~~l~ 73 (75)
T 3a7o_A 13 DDALLNTLAILQKELKSKEQEIRRLKEVIALKNKN----TERLNDELISGTIENNVLQQKLSDLK 73 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc----HHHhhHHHHHhHHHHHHHHHHHHHHh
Confidence 34456678899999999999999999776522222 23556777788888888877666554
No 16
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=94.29 E-value=1.1 Score=34.68 Aligned_cols=76 Identities=18% Similarity=0.353 Sum_probs=45.8
Q ss_pred HHHhhhhhHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028596 41 ISTRVSDLESEHSALRSQLA-------EKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQR 110 (207)
Q Consensus 41 ~atRVs~LEsE~~~LR~~La-------EKd~~i~eLq~rvs~Le~~L~---~rL~~a~ee~~kL~kE~~sLa~TVKkL~R 110 (207)
+..+..+|+.|...|..+|. +++.....|..+-..|+..|. .||..-.+.+..|..++..|...+..|..
T Consensus 39 le~~~~~l~~Ek~~L~~qL~~E~~~l~e~EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~ 118 (129)
T 2fxo_A 39 LEEKMVSLLQEKNDLQLQVQAEQDNLADAEERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKR 118 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666666665554 334444444444455555555 66666666667777777777777777766
Q ss_pred hHHHHH
Q 028596 111 DVSKLE 116 (207)
Q Consensus 111 DvaKLE 116 (207)
++.-||
T Consensus 119 ~led~e 124 (129)
T 2fxo_A 119 DIDDLE 124 (129)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666655
No 17
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=93.90 E-value=0.36 Score=35.78 Aligned_cols=70 Identities=24% Similarity=0.377 Sum_probs=45.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 028596 46 SDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTL 122 (207)
Q Consensus 46 s~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDvaKLE~FKk~L 122 (207)
+.||+|...+-++|.+-.....+|++||..|+..|. .+..+...+..|-..|..+. ---+..|--|+..|
T Consensus 2 ~~l~~e~e~~~~klq~~E~rN~~Le~~v~~le~~Le----~s~~~q~~~~~Elk~l~e~L---d~KI~eL~elRqgL 71 (79)
T 3cvf_A 2 SHMAAEREETQQKVQDLETRNAELEHQLRAMERSLE----EARAERERARAEVGRAAQLL---DVSLFELSELREGL 71 (79)
T ss_dssp --------CTTHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH---hhHHHHHHHHHHHH
Confidence 468889999999999999999999999999999988 77777777777766665543 23333444444443
No 18
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=93.54 E-value=0.054 Score=47.57 Aligned_cols=69 Identities=17% Similarity=0.303 Sum_probs=20.9
Q ss_pred HHhhhhhHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 028596 42 STRVSDLESEHSALRSQLAEK---DSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKL 115 (207)
Q Consensus 42 atRVs~LEsE~~~LR~~LaEK---d~~i~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDvaKL 115 (207)
+..|..|+.|+..||.++.+- .+.... ++|+..|+.++. .....|.+|..+...+...+.+|..+|.+|
T Consensus 23 ~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~-~~~l~eL~~ql~----~L~arNe~L~~~Lk~ar~El~~LkeElerL 94 (251)
T 3m9b_A 23 AAELEQLRREAAVLREQLENAVGSHAPTRS-ARDIHQLEARID----SLAARNSKLMETLKEARQQLLALREEVDRL 94 (251)
T ss_dssp -----------------------------C-CHHHHHHHHHHH----HHTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhhhhcccCcccchh-hhHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 556667788888888888644 333333 444444444443 444444445555555555555555555443
No 19
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=93.42 E-value=0.59 Score=36.65 Aligned_cols=53 Identities=26% Similarity=0.293 Sum_probs=34.6
Q ss_pred hHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH
Q 028596 48 LESEHSALRSQ----LAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEA 100 (207)
Q Consensus 48 LEsE~~~LR~~----LaEKd~~i~eLq~rvs~Le~~L~---~rL~~a~ee~~kL~kE~~s 100 (207)
|-.|+.+||.. ..|-.+.|.+|+.|++.|+.+|. .-...|..++..|..|...
T Consensus 20 Lkreie~lk~ele~l~~E~q~~v~ql~~~i~~Le~eL~e~r~~~q~a~~e~e~Lr~e~~~ 79 (120)
T 3i00_A 20 LYREISGLKAQLENMKTESQRVVLQLKGHVSELEADLAEQQHLRQQAADDCEFLRAELDE 79 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444 45889999999999999999998 2223445555555554443
No 20
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=93.38 E-value=1.4 Score=36.55 Aligned_cols=66 Identities=18% Similarity=0.353 Sum_probs=39.5
Q ss_pred hhHHHHHHHHHHHH-HH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 028596 47 DLESEHSALRSQLA-EK------DSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLE 116 (207)
Q Consensus 47 ~LEsE~~~LR~~La-EK------d~~i~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDvaKLE 116 (207)
.||.|+..|..+|. || ...|.+|+.|+..|+.++. ...+.-.++..||..|...|-.|.+.-+-+|
T Consensus 66 ~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~----~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~e 138 (168)
T 3o0z_A 66 QTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVK----HLKHNLEKVEGERKEAQDMLNHSEKEKNNLE 138 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 45556666666665 54 3566788888888888886 3334444444555555555555555555554
No 21
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=93.36 E-value=2 Score=33.52 Aligned_cols=60 Identities=12% Similarity=0.230 Sum_probs=38.9
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Q 028596 40 AISTRVSDLESEHSALRSQLAEKD----SRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENE 99 (207)
Q Consensus 40 A~atRVs~LEsE~~~LR~~LaEKd----~~i~eLq~rvs~Le~~L~---~rL~~a~ee~~kL~kE~~ 99 (207)
.+..++..|+.|+..+|.++..-. ..|..||+.+..|-..-. .+++...+.|..|.....
T Consensus 7 dL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R 73 (111)
T 2v66_B 7 DLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKR 73 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHH
Confidence 577888999999999998887543 345666666665554444 555555555555555443
No 22
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=93.34 E-value=0.81 Score=41.17 Aligned_cols=22 Identities=27% Similarity=0.335 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhHH
Q 028596 92 ERLSKENEALTNTVRKLQRDVS 113 (207)
Q Consensus 92 ~kL~kE~~sLa~TVKkL~RDva 113 (207)
.+|.+|+..|...++.-.+.+.
T Consensus 540 ~~~~~~~~~le~~~~~~~~~~~ 561 (597)
T 3oja_B 540 EDLEQENIALEKQLDNKRAKQA 561 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHhhhHHHHHHHhhhhhHHH
Confidence 3333444455444444444433
No 23
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=93.28 E-value=0.6 Score=47.09 Aligned_cols=74 Identities=11% Similarity=0.253 Sum_probs=43.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 028596 44 RVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS----------DKLGQAQADKERLSKENEALTNTVRKLQRDVS 113 (207)
Q Consensus 44 RVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~----------~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDva 113 (207)
++..|+.++..|+.++..-...+.+++.++..|+.++. ..+..+.++..+|..++..|...++.|..++.
T Consensus 858 El~~L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~~~L~~e~~~l~~~e~~l~~l~~~~~~Le~~l~ele~ele 937 (1184)
T 1i84_S 858 EMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIE 937 (1184)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456666677777666666666666666666555544 33444455556666666666666666666555
Q ss_pred HHHH
Q 028596 114 KLEV 117 (207)
Q Consensus 114 KLE~ 117 (207)
.++.
T Consensus 938 e~ee 941 (1184)
T 1i84_S 938 EEEE 941 (1184)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4444
No 24
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=92.99 E-value=0.4 Score=35.13 Aligned_cols=45 Identities=20% Similarity=0.188 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 52 HSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEA 100 (207)
Q Consensus 52 ~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~~s 100 (207)
+..|+..|.+|++.|...++++..||..|+ +..+++.+|+.|-+.
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~----ekd~eI~~LqseLDK 65 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELD----QKDELIQMLQNELDK 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence 556666666666666666666666665555 444455555555443
No 25
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=92.94 E-value=2.5 Score=35.51 Aligned_cols=82 Identities=9% Similarity=0.127 Sum_probs=49.8
Q ss_pred CchhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 25 DPFEQLDVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNT 104 (207)
Q Consensus 25 DP~EQLdlArkIts~A~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~~sLa~T 104 (207)
++-|-=+|-..|. ....|.+.||.++..+-.++.++...+.+++.++..++..|...-....+....+.++...|...
T Consensus 88 ~~kE~~aL~kEie--~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~e~~~e~~~l~~~ 165 (256)
T 3na7_A 88 SERELRSLNIEED--IAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEKLALELESLVENEVKNIKETQQIIFKK 165 (256)
T ss_dssp SSSHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444555555 45578888888888888888888888888888888777777633333333334444444444333
Q ss_pred HHHH
Q 028596 105 VRKL 108 (207)
Q Consensus 105 VKkL 108 (207)
-..|
T Consensus 166 r~~l 169 (256)
T 3na7_A 166 KEDL 169 (256)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 3333
No 26
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=92.71 E-value=1.3 Score=35.07 Aligned_cols=54 Identities=28% Similarity=0.311 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 028596 64 SRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEV 117 (207)
Q Consensus 64 ~~i~eLq~rvs~Le~~L~---~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDvaKLE~ 117 (207)
+.+..|+.++..++.++. ..|..+..+...+.+|+..|...+..|.+.+.+||+
T Consensus 75 ~~~~~L~~~l~~~~kE~~~lK~el~~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~ 131 (138)
T 3hnw_A 75 KMADSLSLDIENKDKEIYDLKHELIAAQIKAESSAKEIKELKSEINKYQKNIVKLET 131 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444 455588889999999999999999999999999985
No 27
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=92.51 E-value=2.5 Score=31.43 Aligned_cols=71 Identities=13% Similarity=0.241 Sum_probs=45.9
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 028596 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLE 116 (207)
Q Consensus 40 A~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDvaKLE 116 (207)
+|--||-.||.+-..|..++..-.. ...+.+...+..-+.........+..||..|...+..|..++..|+
T Consensus 20 syIdKVR~LEqqN~~Le~~i~~l~~------~~~~~~~~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k 90 (93)
T 3s4r_A 20 NLIDKVRFLEQQNKILLAELEQLKG------QGKSRLGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLR 90 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh------ccCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5778999999998888766543211 1223333333444556667777777777777777777777766543
No 28
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=92.48 E-value=0.43 Score=40.50 Aligned_cols=37 Identities=32% Similarity=0.487 Sum_probs=34.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 45 VSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (207)
Q Consensus 45 Vs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~ 81 (207)
|++|-+|...|+++|..|+.+|..|++++.+++.+..
T Consensus 22 V~~L~~En~~L~~ql~~k~~ei~~L~~ql~sl~~~~~ 58 (190)
T 4emc_A 22 VANLVNENFVLSEKLDTKATEIKQLQKQIDSLNAQVK 58 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 6789999999999999999999999999999888874
No 29
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=92.44 E-value=2.1 Score=30.59 Aligned_cols=37 Identities=16% Similarity=0.306 Sum_probs=15.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 44 RVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSL 80 (207)
Q Consensus 44 RVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L 80 (207)
|+..++.++.............|..|+.|+..||..|
T Consensus 21 ~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~el 57 (81)
T 1ic2_A 21 RAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDEL 57 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444444444
No 30
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=92.42 E-value=2.9 Score=32.06 Aligned_cols=21 Identities=19% Similarity=0.316 Sum_probs=11.7
Q ss_pred HHHHhhhhhHHHHHHHHHHHH
Q 028596 40 AISTRVSDLESEHSALRSQLA 60 (207)
Q Consensus 40 A~atRVs~LEsE~~~LR~~La 60 (207)
-+...|+.|+.|+..|+.+-+
T Consensus 40 elrr~iq~L~~el~~l~~~~~ 60 (129)
T 3tnu_B 40 EMNRMIQRLRAEIDNVKKQCA 60 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHH
Confidence 344556666666666655443
No 31
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=92.23 E-value=2.2 Score=30.56 Aligned_cols=42 Identities=10% Similarity=0.158 Sum_probs=29.9
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (207)
Q Consensus 40 A~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~ 81 (207)
||..|+..|+.|......++.+-...+.+.+.+...++..+.
T Consensus 3 ~ikkKm~~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~ 44 (81)
T 1ic2_A 3 AIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDELV 44 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 678888888888877777776666666666666666666554
No 32
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=92.21 E-value=0.94 Score=51.04 Aligned_cols=85 Identities=19% Similarity=0.285 Sum_probs=59.0
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 43 TRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS-----------------DKLGQAQADKERLSKENEALTNTV 105 (207)
Q Consensus 43 tRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~-----------------~rL~~a~ee~~kL~kE~~sLa~TV 105 (207)
.++..+|.+....+++|.++.+.+.+|++++..|+.++. .||..|..=...|..|+..=..++
T Consensus 2014 ~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~~~~~~kl~rA~~Li~gL~~Ek~RW~~~~ 2093 (3245)
T 3vkg_A 2014 EEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSKVKNKVDRSIALLDNLNSERGRWEQQS 2093 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccHHHHH
Confidence 466677777777777777777777777777777766654 444555555667888888777777
Q ss_pred HHHhhhHHHH------------------HHHHHHHHhhcc
Q 028596 106 RKLQRDVSKL------------------EVFRKTLVQSLK 127 (207)
Q Consensus 106 KkL~RDvaKL------------------E~FKk~LmqSLq 127 (207)
+.|..+...| +.||+.|++...
T Consensus 2094 ~~l~~~~~~L~GD~LLaaafisY~G~f~~~~R~~l~~~W~ 2133 (3245)
T 3vkg_A 2094 ENFNTQMSTVVGDVVLASAFLAYIGFFDQNFRTDLMRKWM 2133 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 7777666654 457777776433
No 33
>3jsv_C NF-kappa-B essential modulator; ubiquitin, coiled-coil, cellular signaling, cytoplasm, isopeptide bond, nucleus, phosphoprotein, UBL conjugation; 2.70A {Mus musculus} PDB: 3f89_A 2zvo_B 2zvn_B
Probab=92.20 E-value=0.76 Score=35.21 Aligned_cols=66 Identities=20% Similarity=0.351 Sum_probs=49.1
Q ss_pred hHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 028596 48 LESEHSALRSQLAEKD---SRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEV 117 (207)
Q Consensus 48 LEsE~~~LR~~LaEKd---~~i~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDvaKLE~ 117 (207)
...+|..|++.++.+. ..|.-|+.++.-....+. .=+.+-.++..|+..|...+..|.+++.+|..
T Consensus 21 kq~~id~lke~~~q~~~~~E~i~vLk~Qv~IY~~DF~----aERadREkl~~eKe~L~~ql~~lq~q~~~L~~ 89 (94)
T 3jsv_C 21 KQELIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQ----AERHAREKLVEKKEYLQEQLEQLQREFNKLKV 89 (94)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHTTSHHHHHHHHHHHTTC----
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778888777666 666777777777777666 55667789999999999999999999998864
No 34
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=92.16 E-value=3 Score=34.95 Aligned_cols=28 Identities=14% Similarity=0.220 Sum_probs=12.9
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhc
Q 028596 99 EALTNTVRKLQRDVSKLEVFRKTLVQSL 126 (207)
Q Consensus 99 ~sLa~TVKkL~RDvaKLE~FKk~LmqSL 126 (207)
..+...+..+...++.|..=+..|...|
T Consensus 146 ~~~~~~~~e~~~e~~~l~~~r~~l~~~i 173 (256)
T 3na7_A 146 SLVENEVKNIKETQQIIFKKKEDLVEKT 173 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3333444444444555544444454444
No 35
>2q6q_A Spindle POLE BODY component SPC42; SPC42P, budding yeast, cell cycle; 1.97A {Saccharomyces cerevisiae}
Probab=92.11 E-value=1.2 Score=32.88 Aligned_cols=58 Identities=28% Similarity=0.364 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 028596 52 HSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVS 113 (207)
Q Consensus 52 ~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDva 113 (207)
-..|-.+|.+|+++|..|..=+. +|.+||-.-.+-+.||+.+...+...+..|++|++
T Consensus 5 NKeL~~kl~~Kq~EI~rLnvlvg----slR~KLiKYtelnKKLe~~~~~~q~s~~~l~k~~~ 62 (74)
T 2q6q_A 5 NKELNFKLREKQNEIFELKKIAE----TLRSKLEKYVDITKKLEDQNLNLQIKISDLEKKLS 62 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcc
Confidence 45788999999999988765554 44466668889999999999999999988888764
No 36
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=91.99 E-value=2.7 Score=30.73 Aligned_cols=32 Identities=13% Similarity=0.289 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 028596 86 QAQADKERLSKENEALTNTVRKLQRDVSKLEV 117 (207)
Q Consensus 86 ~a~ee~~kL~kE~~sLa~TVKkL~RDvaKLE~ 117 (207)
....+...|..+...|..++..|.+.+..|+.
T Consensus 68 ~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~ 99 (112)
T 1l8d_A 68 KYHLDLNNSKNTLAKLIDRKSELERELRRIDM 99 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555555555544443
No 37
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=91.36 E-value=2.8 Score=32.28 Aligned_cols=67 Identities=22% Similarity=0.314 Sum_probs=32.3
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 40 AISTRVSDLESEHSALRSQLAEKDSRIAE-----------LQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKL 108 (207)
Q Consensus 40 A~atRVs~LEsE~~~LR~~LaEKd~~i~e-----------Lq~rvs~Le~~L~~rL~~a~ee~~kL~kE~~sLa~TVKkL 108 (207)
-+...|+.|+.|+..|+.+-+-=...|.+ ++.++..||.+|+ .+.++......|-..|.+.=-+|
T Consensus 42 elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~----~~r~em~~ql~EYq~Ll~vKl~L 117 (131)
T 3tnu_A 42 ELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEMIGSVEEQLA----QLRCEMEQQNQEYKILLDVKTRL 117 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677777776666544333333333 3333444444443 44444444455555554443344
Q ss_pred hh
Q 028596 109 QR 110 (207)
Q Consensus 109 ~R 110 (207)
--
T Consensus 118 d~ 119 (131)
T 3tnu_A 118 EQ 119 (131)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 38
>4fm3_A Uncharacterized hypothetical protein; PF14346 family protein, DUF4398, structural genomics, joint for structural genomics, JCSG; HET: PG4; 2.47A {Pseudomonas aeruginosa}
Probab=91.27 E-value=2.7 Score=32.22 Aligned_cols=87 Identities=13% Similarity=0.248 Sum_probs=63.9
Q ss_pred chhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 26 PFEQLDVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAE---LQSQIESIYSSLSDKLGQAQADKERLSKENEALT 102 (207)
Q Consensus 26 P~EQLdlArkIts~A~atRVs~LEsE~~~LR~~LaEKd~~i~e---Lq~rvs~Le~~L~~rL~~a~ee~~kL~kE~~sLa 102 (207)
|.|||.++..-+..|.+..++....|...-|.+|..-..-+.+ .+.|.-.=+.++-+||..+.-...|=++..+.|.
T Consensus 5 P~eql~~te~Ai~~A~~aga~~~apEl~~A~dKl~~A~~Am~~~~y~~Ar~lAEqAe~DArLAeAka~~~Ka~~~~~el~ 84 (98)
T 4fm3_A 5 PLEQMRLTEQALEQAKAVGATDDVAELKLAQDKYAAAQIAMTAESYKKARLLAEQAELDARLAESKVLTQKSKDQLGELD 84 (98)
T ss_dssp CHHHHHHHHHHHHHHHHTTCCTTSHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHCCcccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 7999999999999999999999998988888888765555532 1112222223333777888888888888888888
Q ss_pred HHHHHHhhhH
Q 028596 103 NTVRKLQRDV 112 (207)
Q Consensus 103 ~TVKkL~RDv 112 (207)
..|..|..++
T Consensus 85 ~~I~~LrqEl 94 (98)
T 4fm3_A 85 KSLKRLRKQL 94 (98)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 8887777654
No 39
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=90.92 E-value=7.9 Score=34.07 Aligned_cols=23 Identities=17% Similarity=0.300 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHH
Q 028596 95 SKENEALTNTVRKLQRDVSKLEV 117 (207)
Q Consensus 95 ~kE~~sLa~TVKkL~RDvaKLE~ 117 (207)
++....|.+.|++||..+..+++
T Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~ 464 (471)
T 3mq9_A 442 QKKVEELEGEITTLNHKLQDASA 464 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677777777777666554
No 40
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=90.03 E-value=5.7 Score=33.37 Aligned_cols=67 Identities=12% Similarity=0.221 Sum_probs=43.8
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 40 AISTRVSDLESEHSALRSQLAEKDSR----IAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVR 106 (207)
Q Consensus 40 A~atRVs~LEsE~~~LR~~LaEKd~~----i~eLq~rvs~Le~~L~---~rL~~a~ee~~kL~kE~~sLa~TVK 106 (207)
.+.+++..|..|+..+|.++..=... |..||+.++.|..... .+++...+.|..|.........++.
T Consensus 60 ~L~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~Sle 133 (189)
T 2v71_A 60 DLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMSLE 133 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHH
Confidence 56677777777777777777643333 6677777776666655 6666666666666666665555554
No 41
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=89.76 E-value=0.74 Score=33.12 Aligned_cols=45 Identities=24% Similarity=0.412 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 028596 60 AEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKL 115 (207)
Q Consensus 60 aEKd~~i~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDvaKL 115 (207)
.-|+.+|.+|+.++..|+.... .|..||..|-..|..|...+..|
T Consensus 25 eRK~~~i~~LE~~v~~le~~~~-----------~l~~en~~Lr~~i~~L~~El~~l 69 (70)
T 1gd2_E 25 KRKEDHLKALETQVVTLKELHS-----------STTLENDQLRQKVRQLEEELRIL 69 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHTTHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHc
Confidence 3588999999998887776554 46667777777777776665443
No 42
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=89.67 E-value=1.1 Score=35.12 Aligned_cols=15 Identities=20% Similarity=0.140 Sum_probs=6.3
Q ss_pred hhhHHHHHHHHHHHH
Q 028596 46 SDLESEHSALRSQLA 60 (207)
Q Consensus 46 s~LEsE~~~LR~~La 60 (207)
.+|..+.+.|+.+|.
T Consensus 9 ~~lq~~~~ql~~qL~ 23 (112)
T 1x79_B 9 KKLQLMLRQANDQLE 23 (112)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444443
No 43
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=89.63 E-value=1.2 Score=32.58 Aligned_cols=37 Identities=19% Similarity=0.287 Sum_probs=28.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 45 VSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (207)
Q Consensus 45 Vs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~ 81 (207)
|-.|+..+..-..+|..||..|.+|+.++...|..++
T Consensus 21 i~eLq~~L~~K~eELr~kd~~I~eLEk~L~ekd~eI~ 57 (72)
T 3nmd_A 21 LRDLQYALQEKIEELRQRDALIDELELELDQKDELIQ 57 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777777777788888888888888888887776
No 44
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=89.59 E-value=6.1 Score=30.73 Aligned_cols=77 Identities=19% Similarity=0.296 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccc
Q 028596 52 HSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLKD 128 (207)
Q Consensus 52 ~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDvaKLE~FKk~LmqSLq~ 128 (207)
.+.|+.+..-=...+.+++.|+.....+..........+..+|..+++.|..-++.|...-.-||.=.|...-||.|
T Consensus 5 ~rdL~~~~~~L~~E~e~~k~K~~~~~~e~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~~R~t~~SLeD 81 (111)
T 2v66_B 5 NRDLQADNQRLKYEVEALKEKLEHQYAQSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIVSLED 81 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHhhHHH
Confidence 44455555444455555555555554444344455667777777888888888888888888888888887777765
No 45
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=89.39 E-value=6 Score=30.39 Aligned_cols=75 Identities=20% Similarity=0.162 Sum_probs=48.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 028596 48 LESEHSALRSQLAEKDSRIAELQSQIESIYSSLS-------DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRK 120 (207)
Q Consensus 48 LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~-------~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDvaKLE~FKk 120 (207)
-..|+..||..+..-...|..++.+-.+||.++. ..+..+......|..+...+-..+-...++-..|=+.|-
T Consensus 36 ~k~Ei~elrr~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~em~~ql~EYq~Ll~vKl 115 (131)
T 3tnu_A 36 GKSEISELRRTMQNLEIELQSQLSMKASLENSLEETKGRYCMQLAQIQEMIGSVEEQLAQLRCEMEQQNQEYKILLDVKT 115 (131)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456777777777777777777777777777776 345555556666666766666666667777766766665
Q ss_pred HH
Q 028596 121 TL 122 (207)
Q Consensus 121 ~L 122 (207)
.|
T Consensus 116 ~L 117 (131)
T 3tnu_A 116 RL 117 (131)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 46
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=88.90 E-value=6.5 Score=30.08 Aligned_cols=74 Identities=15% Similarity=0.217 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 028596 49 ESEHSALRSQLAEKDSRIAELQSQIESIYSSLS-------DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKT 121 (207)
Q Consensus 49 EsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~-------~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDvaKLE~FKk~ 121 (207)
..|+..||..+..-...|..|+.+-.+||.++. ..+..+......|..+...+-..+-...++-..|=+.|-.
T Consensus 35 k~Ei~elrr~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~~l~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~ 114 (129)
T 3tnu_B 35 KHEISEMNRMIQRLRAEIDNVKKQCANLQNAIADAEQRGELALKDARNKLAELEEALQKAKQDMARLLREYQELMNTKLA 114 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666666666666666666655 2333344444444445444444444455555555555544
Q ss_pred H
Q 028596 122 L 122 (207)
Q Consensus 122 L 122 (207)
|
T Consensus 115 L 115 (129)
T 3tnu_B 115 L 115 (129)
T ss_dssp H
T ss_pred H
Confidence 3
No 47
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=88.83 E-value=0.53 Score=29.69 Aligned_cols=30 Identities=23% Similarity=0.422 Sum_probs=21.7
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 45 VSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (207)
Q Consensus 45 Vs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~ 81 (207)
||.||.|++.|. ..+.+||+|+..||..+|
T Consensus 1 isrlee~~r~l~-------~ivq~lq~r~drle~tvq 30 (32)
T 2akf_A 1 VSRLEEDVRNLN-------AIVQKLQERLDRLEETVQ 30 (32)
T ss_dssp CCHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHH-------HHHHHHHHHHHHHHHHHh
Confidence 467888877775 355678888888877765
No 48
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=88.41 E-value=2.3 Score=34.22 Aligned_cols=46 Identities=17% Similarity=0.329 Sum_probs=28.7
Q ss_pred CchhhHHHHHHHHHHHHHHhhhhhHH---HHHHHHHHHHHHHHHHHHHHH
Q 028596 25 DPFEQLDVARKITSIAISTRVSDLES---EHSALRSQLAEKDSRIAELQS 71 (207)
Q Consensus 25 DP~EQLdlArkIts~A~atRVs~LEs---E~~~LR~~LaEKd~~i~eLq~ 71 (207)
|=.++|-++|++.+. ...|+++||. +...|...+..++..+..|+.
T Consensus 5 ~LEd~L~~~r~~l~~-~~~~~~~le~l~~~l~~l~~~l~~~~~e~~~L~~ 53 (135)
T 2e7s_A 5 SLEEQLNKSLKTIAS-QKAAIENYNQLKEDYNTLKRELSDRDDEVKRLRE 53 (135)
T ss_dssp -CCSTTTHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHTTTHHHHHHTHHH
T ss_pred hHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 445678888875543 4677777776 455555555556666666655
No 49
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=88.40 E-value=0.45 Score=38.98 Aligned_cols=37 Identities=22% Similarity=0.337 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 028596 86 QAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTL 122 (207)
Q Consensus 86 ~a~ee~~kL~kE~~sLa~TVKkL~RDvaKLE~FKk~L 122 (207)
....+..||..++..+...-+.|.||+.-...-||+|
T Consensus 98 ~LeAE~aKLeEekQIseASRqgLrRDLeASReAKKql 134 (146)
T 2xnx_M 98 QLTIEKAKLEEEKQISDASRQSLRRDLDASREAKKQV 134 (146)
T ss_dssp HHHHHHHHHGGGTTTC---------------------
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555666655555555543
No 50
>1cii_A Colicin IA; bacteriocin, ION channel formation, transmembrane protein; 3.00A {Escherichia coli} SCOP: f.1.1.1 h.4.3.1
Probab=88.29 E-value=3.3 Score=39.97 Aligned_cols=64 Identities=23% Similarity=0.385 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 028596 50 SEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVS 113 (207)
Q Consensus 50 sE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~---~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDva 113 (207)
+|-.+||+.+.++...|..++.-++++...+. .....+.+..+.+.+|+..+.+.+-.++..++
T Consensus 349 ae~~~lrQRlddArNEItsaeSaInslqaqvSa~t~e~k~A~d~l~a~~kek~~~~n~~a~~~~KiA 415 (602)
T 1cii_A 349 AEWDKLRQRLLDARNKITSAESAVNSARNNLSARTNEQKHANDALNALLKEKENIRNQLSGINQKIA 415 (602)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 57789999999999999999999999988888 67788889999999999999888777766654
No 51
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=88.21 E-value=7.6 Score=31.87 Aligned_cols=29 Identities=21% Similarity=0.243 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 028596 86 QAQADKERLSKENEALTNTVRKLQRDVSK 114 (207)
Q Consensus 86 ~a~ee~~kL~kE~~sLa~TVKkL~RDvaK 114 (207)
...++..-|+=+.+.+...+++|..+-.+
T Consensus 100 ~l~DEl~aLqlq~n~lE~kl~kLq~EN~~ 128 (152)
T 3a7p_A 100 RLNAALISGTIENNVLQQKLSDLKKEHSQ 128 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555566666666666555433
No 52
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=87.50 E-value=7.2 Score=28.98 Aligned_cols=46 Identities=13% Similarity=0.272 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028596 64 SRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQ 109 (207)
Q Consensus 64 ~~i~eLq~rvs~Le~~L~---~rL~~a~ee~~kL~kE~~sLa~TVKkL~ 109 (207)
..|.+|+++-..|..+.+ +.-....++|.+|..|..+-...+..|-
T Consensus 27 mEieELKekN~~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq~Rl~~LL 75 (81)
T 2jee_A 27 MEIEELKEKNNSLSQEVQNAQHQREELERENNHLKEQQNGWQERLQALL 75 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444443 1112355566677777776666666653
No 53
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=87.26 E-value=4.4 Score=27.79 Aligned_cols=35 Identities=29% Similarity=0.443 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 028596 85 GQAQADKERLSKENEALTNTVRKLQRDVSKLEVFR 119 (207)
Q Consensus 85 ~~a~ee~~kL~kE~~sLa~TVKkL~RDvaKLE~FK 119 (207)
....++...|..+|..|...|..|...+..|..+-
T Consensus 26 ~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l 60 (63)
T 2wt7_A 26 DTLQAETDQLEDEKSALQTEIANLLKEKEKLEFIL 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566777888888888888888888877653
No 54
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=87.13 E-value=6.7 Score=28.25 Aligned_cols=67 Identities=18% Similarity=0.267 Sum_probs=47.3
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 028596 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVS 113 (207)
Q Consensus 40 A~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDva 113 (207)
++.+....||..+..+..... ..+.+++.++..+|.+|+ .+..+......|-..|-+.=-+|--+++
T Consensus 5 ~l~~~~~sLE~~l~e~e~~~~---~~~~~~q~~i~~lE~eL~----~~r~e~~~q~~EYq~LlnvK~~Ld~EIa 71 (84)
T 1gk4_A 5 ALKGTNESLERQMREMEENFA---VEAANYQDTIGRLQDEIQ----NMKEEMARHLREYQDLLNVKMALDIEIA 71 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 345566677777776666653 346788888999999988 7777777777777777776556665553
No 55
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=86.97 E-value=5.5 Score=29.78 Aligned_cols=56 Identities=21% Similarity=0.260 Sum_probs=35.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 45 VSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKL 108 (207)
Q Consensus 45 Vs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~~sLa~TVKkL 108 (207)
-|.||+||.. |+..-.+| .++...-..++.+|+.+..+|..|..|...|...++-|
T Consensus 16 QSALeaEIqA-------KQ~i~EEL-s~vr~~ni~~eskL~eae~rn~eL~~e~~~l~~~~eel 71 (81)
T 1wt6_A 16 QEALEEEVLT-------RQSLSREM-EAIRTDNQNFASQLREAEARNRDLEAHVRQLQERMELL 71 (81)
T ss_dssp HHHHHHHHHH-------HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-------HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666543 44444455 44544444555888899999999888866666655554
No 56
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=86.91 E-value=0.96 Score=40.93 Aligned_cols=35 Identities=14% Similarity=0.380 Sum_probs=18.0
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 43 TRVSDLESEHSALRSQLAEKDSRIAELQSQIESIY 77 (207)
Q Consensus 43 tRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le 77 (207)
+++..|+.|+..|+++..+.++.|++++.++..++
T Consensus 3 ~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ 37 (403)
T 4etp_A 3 SKIAALKEKIAALKEKIAALKEKIKDTELGMKELN 37 (403)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566666666655555555555554444333
No 57
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=86.85 E-value=1.3 Score=33.16 Aligned_cols=34 Identities=38% Similarity=0.569 Sum_probs=22.7
Q ss_pred HHHHhhhhhHHH--------------HHHHHHHHHHHHHHHHHHHHHH
Q 028596 40 AISTRVSDLESE--------------HSALRSQLAEKDSRIAELQSQI 73 (207)
Q Consensus 40 A~atRVs~LEsE--------------~~~LR~~LaEKd~~i~eLq~rv 73 (207)
-+.-||+.||+| +..|+++|..|+..|.-|+.++
T Consensus 30 ~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~~~l 77 (81)
T 3qh9_A 30 HLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLHSQL 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 456677777754 6667777777777776666554
No 58
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=86.79 E-value=8.9 Score=29.33 Aligned_cols=71 Identities=15% Similarity=0.240 Sum_probs=44.9
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 028596 43 TRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS----DKLGQAQADKERLSKENEALTNTVRKLQRDVS 113 (207)
Q Consensus 43 tRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~----~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDva 113 (207)
.+++..+.|+.+|+..|.+-...-...+.....++.+|- +-..+|..+...-..++..+...+.+|...+.
T Consensus 19 ~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~~~e~kn~~L~~qL~ 93 (97)
T 2eqb_B 19 RELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLR 93 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 566667888888888888766666666666666666665 34455555555555555555555555555443
No 59
>1x4t_A Hypothetical protein LOC57905; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.2.15.1
Probab=86.69 E-value=0.89 Score=34.70 Aligned_cols=48 Identities=13% Similarity=0.227 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028596 62 KDSRIAELQSQIESIYSSLS--DKLGQAQADKERLSKENEALTNTVRKLQ 109 (207)
Q Consensus 62 Kd~~i~eLq~rvs~Le~~L~--~rL~~a~ee~~kL~kE~~sLa~TVKkL~ 109 (207)
+...|.|+-++++.++..-- -+++...++++||.+|+..-...++.|.
T Consensus 30 R~qvikEIs~Kv~~Iqn~~L~E~~IRdLNDEINkL~rEK~~WE~rI~eLG 79 (92)
T 1x4t_A 30 RRQIIGEISKKVAQIQNAGLGEFRIRDLNDEINKLLREKGHWEVRIKELG 79 (92)
T ss_dssp HHHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34556777777776654433 7888999999999999999999998875
No 60
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=86.41 E-value=13 Score=34.91 Aligned_cols=73 Identities=10% Similarity=0.166 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcc
Q 028596 55 LRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQAD-KERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLK 127 (207)
Q Consensus 55 LR~~LaEKd~~i~eLq~rvs~Le~~L~~rL~~a~ee-~~kL~kE~~sLa~TVKkL~RDvaKLE~FKk~LmqSLq 127 (207)
|+..+.+++..+.+++..+......|........+. +.+....-..|...+..|...+.+||....+++....
T Consensus 126 Iq~slk~~Q~Qi~en~n~~~~~~~~~e~~~~~i~~~~~~~~~~~i~~L~~~~~~l~~ki~~l~~~~~~~~~~~~ 199 (464)
T 1m1j_B 126 IDNKLVKTQKQRKDNDIILSEYNTEMELHYNYIKDNLDNNIPSSLRVLRAVIDSLHKKIQKLENAIATQTDYCR 199 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhhcccccccchhhHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 455556666666666655555555554111111111 1123445566777788888889999988888877654
No 61
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=85.70 E-value=4.2 Score=31.67 Aligned_cols=49 Identities=29% Similarity=0.474 Sum_probs=31.8
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENE 99 (207)
Q Consensus 40 A~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~~ 99 (207)
-+-.|++.||.|..+||..-.+=...|.+|+..+. ....+|..|..||.
T Consensus 41 ~LE~~~s~le~e~~rlr~~~~~~~~~v~eLe~eve-----------rL~~ENq~L~~e~~ 89 (104)
T 3s9g_A 41 ELEKSLSRMEDENNRLRLESKRLDARVRELELELD-----------RLRAENLQLLTENE 89 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHH-----------HHHHHHHHHHHHHH
Confidence 56778999999999999885555555555554433 44445555555554
No 62
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=85.61 E-value=4.5 Score=31.05 Aligned_cols=24 Identities=25% Similarity=0.430 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 028596 86 QAQADKERLSKENEALTNTVRKLQ 109 (207)
Q Consensus 86 ~a~ee~~kL~kE~~sLa~TVKkL~ 109 (207)
.+.++..+|+.|...|-..|++|.
T Consensus 72 ~~~~~~e~Lq~E~erLr~~v~~lE 95 (100)
T 1go4_E 72 RLREDHSQLQAECERLRGLLRAME 95 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455667777777776666665543
No 63
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=85.49 E-value=15 Score=30.54 Aligned_cols=79 Identities=19% Similarity=0.215 Sum_probs=38.4
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 028596 44 RVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRK 120 (207)
Q Consensus 44 RVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~---~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDvaKLE~FKk 120 (207)
-++.+|.-++.|+.++.-=...-..|++.+..|+.+|. .-..+..+.+..|+....+|..-++.+.--.++++.=+|
T Consensus 42 ~~~~~E~~~rELq~~~~~L~~~k~~Leke~~~LQa~L~qEr~~r~q~se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r 121 (168)
T 3o0z_A 42 SISQLESLNRELQERNRILENSKSQTDKDYYQLQAILEAERRDRGHDSEMIGDLQARITSLQEEVKHLKHNLEKVEGERK 121 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555666655555444455555555555555555 112233333444444444444444444444444444444
Q ss_pred HH
Q 028596 121 TL 122 (207)
Q Consensus 121 ~L 122 (207)
+|
T Consensus 122 ~L 123 (168)
T 3o0z_A 122 EA 123 (168)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 64
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=85.37 E-value=8.8 Score=27.93 Aligned_cols=38 Identities=21% Similarity=0.123 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcc
Q 028596 90 DKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLK 127 (207)
Q Consensus 90 e~~kL~kE~~sLa~TVKkL~RDvaKLE~FKk~LmqSLq 127 (207)
...+...+...|...+..|...+..|+.-.+.|-+.+.
T Consensus 65 ~i~~~~~~l~~l~~~i~~l~~~i~~l~~~~~~l~~~~~ 102 (112)
T 1l8d_A 65 LLSKYHLDLNNSKNTLAKLIDRKSELERELRRIDMEIK 102 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666667777766666666655554443
No 65
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=84.46 E-value=5.6 Score=31.70 Aligned_cols=34 Identities=15% Similarity=0.296 Sum_probs=14.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 48 LESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (207)
Q Consensus 48 LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~ 81 (207)
||.+...-.+-|.+++.....-..-+..|-.+|-
T Consensus 30 Lq~qLTqAQe~l~~~eaQAaTCNqTV~tL~~SL~ 63 (121)
T 3mq7_A 30 LQQELTEAQKGFQDVEAQAATANHTVMALMASLD 63 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444444443
No 66
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=84.25 E-value=2.8 Score=29.00 Aligned_cols=36 Identities=22% Similarity=0.346 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 028596 83 KLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVF 118 (207)
Q Consensus 83 rL~~a~ee~~kL~kE~~sLa~TVKkL~RDvaKLE~F 118 (207)
+.....++...|..+|+.|...|..|.+++.-|..+
T Consensus 24 ~~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~l 59 (63)
T 1ci6_A 24 EQEALTGECKELEKKNEALKERADSLAKEIQYLKDL 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556677788889999999999999998888654
No 67
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=84.25 E-value=9.9 Score=27.58 Aligned_cols=66 Identities=11% Similarity=0.153 Sum_probs=39.0
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 028596 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVS 113 (207)
Q Consensus 41 ~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDva 113 (207)
+.+..+.||.-+..+.... ...+..++..++.+|.+|+ .+..+......|-..|-+.=-+|--+++
T Consensus 8 L~~q~~~Le~~l~e~E~~~---~~~l~~~q~~i~~lE~el~----~~r~e~~~ql~EYq~LlnvK~~Le~EIa 73 (86)
T 1x8y_A 8 LQCQLAAKEAKLRDLEDSL---ARERDTSRRLLAEKEREMA----EMRARMQQQLDEYQELLDIKLALDMEIH 73 (86)
T ss_dssp ----CTTHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 3444455666555555544 3356667777777777776 6666666666677777665555655543
No 68
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=83.89 E-value=5.3 Score=29.85 Aligned_cols=64 Identities=11% Similarity=0.111 Sum_probs=41.8
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 028596 43 TRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVS 113 (207)
Q Consensus 43 tRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDva 113 (207)
.+...||..++.+....+ ..+..++..+..||.+|+ .+.++......|-..|-+.=-+|--+++
T Consensus 19 ~~~~~LE~~l~e~E~~~~---~e~~~~q~~i~~lE~eL~----~~r~e~~~ql~EYq~LlnvKl~Le~EIa 82 (95)
T 3mov_A 19 KESRACLERIQELEDLLA---KEKDNSRRMLTDKEREMA----EIRDQMQQQLNDYEQLLDVKLALDMEIS 82 (95)
T ss_dssp CCCHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555554433 356778888888898887 6677777777777777776666665544
No 69
>4ghu_A TNF receptor-associated factor 3; alpha/beta, innate immunity, IFN pathway, immune system; 2.20A {Mus musculus} PDB: 2gkw_A 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=83.62 E-value=1.5 Score=35.54 Aligned_cols=32 Identities=25% Similarity=0.313 Sum_probs=25.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 47 DLESEHSALRSQLAEKDSRIAELQSQIESIYS 78 (207)
Q Consensus 47 ~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~ 78 (207)
.||..++.|...|..|+..|.+|++|+..+|.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 35 (198)
T 4ghu_A 4 LLESQLSRHDQMLSVHDIRLADMDLRFQVLET 35 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 67888888888888888888888877766653
No 70
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=83.49 E-value=8.2 Score=26.07 Aligned_cols=33 Identities=27% Similarity=0.366 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 028596 86 QAQADKERLSKENEALTNTVRKLQRDVSKLEVF 118 (207)
Q Consensus 86 ~a~ee~~kL~kE~~sLa~TVKkL~RDvaKLE~F 118 (207)
...++...|..+|..|...|..|..++..|+.+
T Consensus 26 ~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~ 58 (61)
T 1t2k_D 26 SLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQL 58 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555567777778888888888877777543
No 71
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=83.46 E-value=4.2 Score=27.72 Aligned_cols=35 Identities=20% Similarity=0.389 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 028596 83 KLGQAQADKERLSKENEALTNTVRKLQRDVSKLEV 117 (207)
Q Consensus 83 rL~~a~ee~~kL~kE~~sLa~TVKkL~RDvaKLE~ 117 (207)
++....++...|..+|+.|...|..|...++.|..
T Consensus 23 ~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~ 57 (62)
T 1jnm_A 23 RIARLEEKVKTLKAQNSELASTANMLREQVAQLKQ 57 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555667778888888888888888877754
No 72
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=83.28 E-value=3.5 Score=36.90 Aligned_cols=42 Identities=17% Similarity=0.103 Sum_probs=30.4
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (207)
Q Consensus 40 A~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~ 81 (207)
++..++++|..|+.+|...+...+..|..|+.++..++..++
T Consensus 2 ~~~~~~~~~~~~~~~~e~~i~~~~~~i~~L~~~l~~~~~~i~ 43 (323)
T 1lwu_C 2 SGQKTVQKILEEVRILEQIGVSHDAQIQELSEMWRVNQQFVT 43 (323)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHH
Confidence 355678888888888888888888888888877776554443
No 73
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=82.93 E-value=12 Score=36.34 Aligned_cols=16 Identities=31% Similarity=0.239 Sum_probs=10.9
Q ss_pred HHHHHHHHHhhccccc
Q 028596 115 LEVFRKTLVQSLKDDE 130 (207)
Q Consensus 115 LE~FKk~LmqSLq~D~ 130 (207)
-|+.-|+|-|-.--|-
T Consensus 178 Y~~~QKQLeQv~a~dL 193 (562)
T 3ghg_A 178 YEDQQKQLEQVIAKDL 193 (562)
T ss_dssp HHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHhhccc
Confidence 5677889988554443
No 74
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=82.68 E-value=7.2 Score=28.30 Aligned_cols=65 Identities=14% Similarity=0.230 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 028596 50 SEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKT 121 (207)
Q Consensus 50 sE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDvaKLE~FKk~ 121 (207)
.|+..||.+.+.....+.+++.++. ..+.........|..|...+-..+....++-..|=+.|-.
T Consensus 3 ~eie~L~~q~~~Le~~l~e~E~~~~-------~~l~~~q~~i~~lE~el~~~r~e~~~ql~EYq~LlnvK~~ 67 (86)
T 1x8y_A 3 CQLSQLQCQLAAKEAKLRDLEDSLA-------RERDTSRRLLAEKEREMAEMRARMQQQLDEYQELLDIKLA 67 (86)
T ss_dssp ---------CTTHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4666677766665555555555443 2223444444555555555555555556665555555544
No 75
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=82.31 E-value=6.3 Score=29.31 Aligned_cols=36 Identities=33% Similarity=0.388 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 028596 85 GQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRK 120 (207)
Q Consensus 85 ~~a~ee~~kL~kE~~sLa~TVKkL~RDvaKLE~FKk 120 (207)
....++...|.+||..|-..|..|..++..|..+-.
T Consensus 39 ~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~ 74 (87)
T 1hjb_A 39 LETQHKVLELTAENERLQKKVEQLSRELSTLRNLFK 74 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567788999999999999999999987765543
No 76
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=82.25 E-value=13 Score=27.34 Aligned_cols=9 Identities=44% Similarity=0.671 Sum_probs=4.4
Q ss_pred HHhhhhhHH
Q 028596 42 STRVSDLES 50 (207)
Q Consensus 42 atRVs~LEs 50 (207)
..||..||.
T Consensus 5 e~rv~~LEr 13 (83)
T 2xdj_A 5 EDRVTQLER 13 (83)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 345555544
No 77
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=81.98 E-value=4 Score=36.87 Aligned_cols=46 Identities=17% Similarity=0.185 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccccCC
Q 028596 87 AQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLKDDEDA 132 (207)
Q Consensus 87 a~ee~~kL~kE~~sLa~TVKkL~RDvaKLE~FKk~LmqSLq~D~~~ 132 (207)
..++..+|.++...+...++.|+..+.+-|..+|.|-+.+++-..+
T Consensus 15 l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~rr~l~n~~~elkgn 60 (403)
T 4etp_A 15 LKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELRGN 60 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 3333444444444445555555556666667777777777665443
No 78
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=81.87 E-value=26 Score=30.73 Aligned_cols=33 Identities=24% Similarity=0.338 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 028596 83 KLGQAQADKERLSKENEALTNTVRKLQRDVSKL 115 (207)
Q Consensus 83 rL~~a~ee~~kL~kE~~sLa~TVKkL~RDvaKL 115 (207)
+..+.+.+...|..|...|...++.+..+|.+|
T Consensus 437 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (471)
T 3mq9_A 437 EKAQGQKKVEELEGEITTLNHKLQDASAEVERL 469 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444444555555555555555555544443
No 79
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=81.81 E-value=5.4 Score=28.87 Aligned_cols=33 Identities=9% Similarity=0.140 Sum_probs=19.2
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhcccccC
Q 028596 99 EALTNTVRKLQRDVSKLEVFRKTLVQSLKDDED 131 (207)
Q Consensus 99 ~sLa~TVKkL~RDvaKLE~FKk~LmqSLq~D~~ 131 (207)
+.|..+|.+.++.+++|..--+.|.+-|++-.+
T Consensus 31 eeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~~ 63 (78)
T 3efg_A 31 TELSEALADARLTGARNAELIRHLLEDLGKVRS 63 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 345566667777777777777777777765443
No 80
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=81.50 E-value=14 Score=27.42 Aligned_cols=42 Identities=7% Similarity=0.151 Sum_probs=26.6
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (207)
Q Consensus 40 A~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~ 81 (207)
||+.++..|-.|....-.+...-...+.+++.+...++..+.
T Consensus 6 aIKkKm~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~ 47 (101)
T 3u1c_A 6 AIKKKMQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIV 47 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 777888777777666665555555555555555555555554
No 81
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=80.76 E-value=14 Score=26.82 Aligned_cols=46 Identities=17% Similarity=0.311 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 55 LRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNT 104 (207)
Q Consensus 55 LR~~LaEKd~~i~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~~sLa~T 104 (207)
+-++|.+-.....+|++||..|+..|. .+..++..+..|-..|..+
T Consensus 5 ~~~kLq~~E~~N~~Le~~v~~le~~Le----~s~~~q~~~~~Elk~~~e~ 50 (72)
T 3cve_A 5 SHMKLQEVEIRNKDLEGQLSEMEQRLE----KSQSEQDAFRSNLKTLLEI 50 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 445566666667778888888887776 6666666666665555444
No 82
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=80.71 E-value=15 Score=27.25 Aligned_cols=29 Identities=24% Similarity=0.345 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 028596 88 QADKERLSKENEALTNTVRKLQRDVSKLE 116 (207)
Q Consensus 88 ~ee~~kL~kE~~sLa~TVKkL~RDvaKLE 116 (207)
.-....+++|+++|.++..--...+.||.
T Consensus 66 ~~ql~e~~dE~~Sl~~q~~~~~~qLdkL~ 94 (96)
T 3q8t_A 66 KRQQLELDDELKSVENQMRYAQMQLDKLK 94 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 33456677788888887777666666664
No 83
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=80.64 E-value=15 Score=27.02 Aligned_cols=41 Identities=20% Similarity=0.374 Sum_probs=23.2
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSL 80 (207)
Q Consensus 40 A~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L 80 (207)
-+..++..|..|+..||-++.+-...|..|++|-..+-..|
T Consensus 24 ~Lq~Ql~~Lq~Ev~~LRGqiE~~~~~l~ql~~rQrd~Y~dL 64 (83)
T 2xdj_A 24 QLQQQLSDNQSDIDSLRGQIQENQYQLNQVVERQKQILLQI 64 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555666666666666666666666666555544443333
No 84
>1yf2_A Type I restriction-modification enzyme, S subunit; structura genomics, PSI, protein structure initiative; 2.40A {Methanocaldococcus jannaschii} SCOP: d.287.1.2 d.287.1.2
Probab=79.81 E-value=3.3 Score=34.42 Aligned_cols=39 Identities=13% Similarity=0.308 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhc
Q 028596 88 QADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSL 126 (207)
Q Consensus 88 ~ee~~kL~kE~~sLa~TVKkL~RDvaKLE~FKk~LmqSL 126 (207)
.++|.+..+--+.|-..+..+++.+.+|+.+|+.||+.+
T Consensus 378 l~eQ~~I~~~l~~ld~~i~~~~~~~~~l~~~k~~Ll~~l 416 (425)
T 1yf2_A 378 LEEQKQIAKILSSVDKSIELKKQKKEKLQRMKKKIMELL 416 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555666666666777788888999999999999976
No 85
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=79.78 E-value=7.8 Score=26.20 Aligned_cols=39 Identities=21% Similarity=0.245 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 61 EKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTN 103 (207)
Q Consensus 61 EKd~~i~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~~sLa~ 103 (207)
-|-..+.+|+.++..|+..-. ....+...|..|+..|-+
T Consensus 19 rKk~~~~~Le~~~~~L~~~n~----~L~~~i~~L~~e~~~Lk~ 57 (61)
T 1t2k_D 19 KRKVWVQSLEKKAEDLSSLNG----QLQSEVTLLRNEVAQLKQ 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 355567777777776666554 444455555555555543
No 86
>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}
Probab=78.71 E-value=17 Score=29.53 Aligned_cols=63 Identities=17% Similarity=0.258 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHhhhHHHHHHHHHHHHhhccc
Q 028596 62 KDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEA-------------LTNTVRKLQRDVSKLEVFRKTLVQSLKD 128 (207)
Q Consensus 62 Kd~~i~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~~s-------------La~TVKkL~RDvaKLE~FKk~LmqSLq~ 128 (207)
|+....+|+.++..+|.+|+ +..-+..++.+|... +.+--...+..-++++..|+.|.+-|+.
T Consensus 27 Ke~l~~~l~~~i~q~d~elq----QLefq~kr~~~e~~~q~~~~~~p~~~~qi~~iq~q~~~ek~~r~e~k~~l~~ql~q 102 (150)
T 4dci_A 27 KEEAEREISNGIANADQQLA----QLEQEGQTVVDQVRRQSANPLDPRVQEQVANIQQQVAGKRSELEEQKRNLLQQQAQ 102 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhccCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677777777777777777 333333333333322 1122244566667777777777665443
No 87
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=77.92 E-value=23 Score=27.78 Aligned_cols=29 Identities=10% Similarity=0.193 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 028596 92 ERLSKENEALTNTVRKLQRDVSKLEVFRK 120 (207)
Q Consensus 92 ~kL~kE~~sLa~TVKkL~RDvaKLE~FKk 120 (207)
.++.+.+..|-..+|+...=|+-+|.+|+
T Consensus 78 k~Y~~~~keLd~~ik~qekiIdnFE~ik~ 106 (119)
T 3etw_A 78 SKYEDALKKLEAEMEQQKAVISDFEKIQA 106 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666777777777777776666665553
No 88
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=77.63 E-value=18 Score=26.77 Aligned_cols=31 Identities=19% Similarity=0.342 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 028596 86 QAQADKERLSKENEALTNTVRKLQRDVSKLE 116 (207)
Q Consensus 86 ~a~ee~~kL~kE~~sLa~TVKkL~RDvaKLE 116 (207)
...++|..|..|+..+.+....|.++..+|.
T Consensus 31 ELKekN~~L~~e~~e~~~~~~~L~~en~qLk 61 (81)
T 2jee_A 31 ELKEKNNSLSQEVQNAQHQREELERENNHLK 61 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 4555555566655555555555555555554
No 89
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=77.14 E-value=13 Score=24.51 Aligned_cols=47 Identities=15% Similarity=0.268 Sum_probs=23.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 46 SDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSK 96 (207)
Q Consensus 46 s~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~~rL~~a~ee~~kL~k 96 (207)
.+||..+..+..+..++.+.+..+..++..+...|. .+++++.++..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~l~----~~~~~I~~~k~ 54 (60)
T 3htk_A 8 KTLENQVEELTEKCSLKTDEFLKAKEKINEIFEKLN----TIRDEVIKKKN 54 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Confidence 345555555555555555555555555555544444 44455444433
No 90
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=76.51 E-value=12 Score=25.47 Aligned_cols=33 Identities=24% Similarity=0.347 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 65 RIAELQSQIESIYSSLSDKLGQAQADKERLSKENEAL 101 (207)
Q Consensus 65 ~i~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~~sL 101 (207)
.+..|-.|-..|...|. .+.++..+|.+|-+.|
T Consensus 17 ~l~~L~~rN~rL~~~L~----~AR~el~~Lkeele~L 49 (51)
T 3m91_A 17 RIDSLAARNSKLMETLK----EARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHh
Confidence 33444444444444444 5666666665555544
No 91
>1yf2_A Type I restriction-modification enzyme, S subunit; structura genomics, PSI, protein structure initiative; 2.40A {Methanocaldococcus jannaschii} SCOP: d.287.1.2 d.287.1.2
Probab=76.03 E-value=4.9 Score=33.34 Aligned_cols=40 Identities=18% Similarity=0.379 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcc
Q 028596 88 QADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLK 127 (207)
Q Consensus 88 ~ee~~kL~kE~~sLa~TVKkL~RDvaKLE~FKk~LmqSLq 127 (207)
.+||.+..+--+.|-..+..+++.+++|+..|++||+.+=
T Consensus 168 l~EQ~~I~~~l~~ld~~i~~~~~~i~~l~~~k~~l~~~~~ 207 (425)
T 1yf2_A 168 LEEQKQIAKILTKIDEGIEIIEKSINKLERIKKGLMHKLL 207 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666667777778888888999999999998753
No 92
>4emc_A Monopolin complex subunit CSM1; RWD domain, kinetochore-binding, kinetoch replication-replication complex; 3.05A {Saccharomyces cerevisiae} PDB: 3n7n_A 3n4x_A
Probab=75.96 E-value=7.5 Score=32.97 Aligned_cols=57 Identities=19% Similarity=0.326 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 028596 54 ALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSK 114 (207)
Q Consensus 54 ~LR~~LaEKd~~i~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDvaK 114 (207)
.+.++|..-+..|..|+.....|..+|. ...+++..|+++-++|.+.++.+.-.++|
T Consensus 10 ~~q~ql~~ad~LV~~L~~En~~L~~ql~----~k~~ei~~L~~ql~sl~~~~~~~~~~~~~ 66 (190)
T 4emc_A 10 SVKQQIDSADLLVANLVNENFVLSEKLD----TKATEIKQLQKQIDSLNAQVKELKTQTSQ 66 (190)
T ss_dssp ----------CHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhhhhhhhhHHHH
Confidence 3456777778888889888888887776 78888888988888888888876655554
No 93
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=75.93 E-value=14 Score=27.18 Aligned_cols=52 Identities=21% Similarity=0.363 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Q 028596 67 AELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQS 125 (207)
Q Consensus 67 ~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDvaKLE~FKk~LmqS 125 (207)
.+|++||..||..|- .. +.++++=-.....+-.||.+-|.+||.+-+.+.-.
T Consensus 3 ~dlEEKv~~LE~sld----~L---QTrfARLLaEy~ssQ~KLKqRit~LE~~~~~~~~~ 54 (74)
T 3swf_A 3 MGLEEKVTRMESSVD----LL---QTRFARILAEYESMQQKLKQRLTKVEKFLKPLIDT 54 (74)
T ss_dssp -CHHHHHHHHHHHHH----HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHH----HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC
Confidence 468889999998885 22 23333333445566788899999999988875543
No 94
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=75.91 E-value=21 Score=29.05 Aligned_cols=26 Identities=15% Similarity=0.212 Sum_probs=13.1
Q ss_pred hhHHHHHHHHHHHHHHhhhhhHHHHHH
Q 028596 28 EQLDVARKITSIAISTRVSDLESEHSA 54 (207)
Q Consensus 28 EQLdlArkIts~A~atRVs~LEsE~~~ 54 (207)
+.|-.+|+... ....|+..||..-..
T Consensus 20 D~L~~~R~el~-~~~~ri~~lE~~r~~ 45 (154)
T 2ocy_A 20 EQLNKSLKTIA-SQKAAIENYNQLKED 45 (154)
T ss_dssp HHHHHHHHHHH-HHHHHHHTTHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHH
Confidence 44555555443 335566666654333
No 95
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Probab=75.87 E-value=25 Score=28.52 Aligned_cols=33 Identities=15% Similarity=0.277 Sum_probs=15.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 48 LESEHSALRSQLAEKDSRIAELQSQIESIYSSL 80 (207)
Q Consensus 48 LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L 80 (207)
+|.+..+--..+..-...|.+|++.+-.+...|
T Consensus 26 ~E~dLEraEERae~aE~k~~eLEeeL~~v~~nl 58 (155)
T 2efr_A 26 LKKLLERAEERAELSEGKSAELEEELKTVTNNL 58 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455554444444444444444444444444333
No 96
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=75.56 E-value=18 Score=27.68 Aligned_cols=50 Identities=24% Similarity=0.440 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 50 SEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTN 103 (207)
Q Consensus 50 sE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~~sLa~ 103 (207)
.++..|..++.+.+..+..|+.++..-. .+-..+..+..++..|-..|..
T Consensus 12 e~l~~le~~~~~~~~e~~~L~~~l~eE~----~~R~~aE~~~~~ie~ElEeLTa 61 (97)
T 2eqb_B 12 EDYNTLKRELSDRDDEVKRLREDIAKEN----ELRTKAEEEADKLNKEVEDLTA 61 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555554443322 2333555666666666665544
No 97
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=75.40 E-value=10 Score=27.61 Aligned_cols=33 Identities=33% Similarity=0.468 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 028596 86 QAQADKERLSKENEALTNTVRKLQRDVSKLEVF 118 (207)
Q Consensus 86 ~a~ee~~kL~kE~~sLa~TVKkL~RDvaKLE~F 118 (207)
...++...|..||..|...|..|..+|..|..+
T Consensus 40 e~~~r~~~L~~eN~~L~~~v~~L~~E~~~Lr~l 72 (78)
T 1gu4_A 40 ETQHKVLELTAENERLQKKVEQLSRELSTLRNL 72 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667788999999999999999998888654
No 98
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=75.30 E-value=16 Score=26.02 Aligned_cols=39 Identities=13% Similarity=0.240 Sum_probs=24.7
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 42 STRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSL 80 (207)
Q Consensus 42 atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L 80 (207)
..++..||.++..|......=...+..|+.++..|..++
T Consensus 28 ~~~i~~LE~~v~~le~~~~~l~~en~~Lr~~i~~L~~El 66 (70)
T 1gd2_E 28 EDHLKALETQVVTLKELHSSTTLENDQLRQKVRQLEEEL 66 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677787777777665555555666666665555554
No 99
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=75.16 E-value=5.5 Score=26.57 Aligned_cols=21 Identities=10% Similarity=0.311 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 028596 60 AEKDSRIAELQSQIESIYSSL 80 (207)
Q Consensus 60 aEKd~~i~eLq~rvs~Le~~L 80 (207)
.+.+..+++|++|++.|+.+=
T Consensus 13 k~le~~naeLEervstLq~EN 33 (42)
T 2oqq_A 13 KDLENKNSELEERLSTLQNEN 33 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhH
Confidence 344555666666666655544
No 100
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=75.03 E-value=4.7 Score=32.11 Aligned_cols=33 Identities=24% Similarity=0.308 Sum_probs=23.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 46 SDLESEHSALRSQLAEKDSRIAELQSQIESIYS 78 (207)
Q Consensus 46 s~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~ 78 (207)
..||..+..+..+++.++..|++|+.|+..+|.
T Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 35 (192)
T 2gkw_A 3 GLLESQLSRHDQMLSVHDIRLADMDLRFQVLET 35 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 356777777777777777777777777665554
No 101
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=74.34 E-value=15 Score=25.01 Aligned_cols=40 Identities=23% Similarity=0.237 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 61 EKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNT 104 (207)
Q Consensus 61 EKd~~i~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~~sLa~T 104 (207)
-|-..+.+|+.++..|+..-. ....+...|..|...|...
T Consensus 20 rKk~~~~~Le~~v~~L~~~n~----~L~~ei~~L~~e~~~Lk~~ 59 (63)
T 2wt7_A 20 RRRELTDTLQAETDQLEDEKS----ALQTEIANLLKEKEKLEFI 59 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 455667777777776655443 3333444455555544443
No 102
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=74.07 E-value=46 Score=29.30 Aligned_cols=58 Identities=16% Similarity=0.100 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028596 54 ALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRD 111 (207)
Q Consensus 54 ~LR~~LaEKd~~i~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~~sLa~TVKkL~RD 111 (207)
....+..+.+......++++.......+.+.....+++++|.++...+...+.+-+.-
T Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 471 (487)
T 3oja_A 414 AIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANAT 471 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccH
Confidence 3444444444445555555555555555555555556666666666655555544433
No 103
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=73.48 E-value=25 Score=25.88 Aligned_cols=42 Identities=7% Similarity=0.141 Sum_probs=25.1
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (207)
Q Consensus 40 A~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~ 81 (207)
||+.++..|--|....-.+...-...+.+++.+...++..+.
T Consensus 6 ~iKkKm~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~ 47 (101)
T 3u59_A 6 AIKKKMQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQ 47 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 777888777666665555555555555555555555555544
No 104
>3kqg_A Langerin, C-type lectin domain family 4 member K; trimer, NECK and CRD, coiled coil, immune system; 2.30A {Homo sapiens}
Probab=73.48 E-value=6.2 Score=29.98 Aligned_cols=31 Identities=29% Similarity=0.493 Sum_probs=11.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 46 SDLESEHSALRSQLAEKDSRIAELQSQIESIYSSL 80 (207)
Q Consensus 46 s~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L 80 (207)
++|.+|+..||+.+. .+..|+.++..|+..|
T Consensus 2 ~~l~~~~~~l~~~~~----~~~~l~~~~~~l~~~l 32 (182)
T 3kqg_A 2 STLNAQIPELKSDLE----KASALNTKIRALQGSL 32 (182)
T ss_dssp -----------CHHH----HHHHHHHHHHHHHHHH
T ss_pred CchhhhHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 567888888888776 3455555555555555
No 105
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=73.44 E-value=28 Score=26.48 Aligned_cols=21 Identities=24% Similarity=0.344 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHhhhHHHHHHH
Q 028596 98 NEALTNTVRKLQRDVSKLEVF 118 (207)
Q Consensus 98 ~~sLa~TVKkL~RDvaKLE~F 118 (207)
+-.|.+.|..|.-++..|+..
T Consensus 85 r~dLE~~iesL~eEl~FLKk~ 105 (119)
T 3ol1_A 85 RLDLERKVESLQEEIAFLKKL 105 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 334555566666655555443
No 106
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=73.03 E-value=8.5 Score=28.53 Aligned_cols=46 Identities=17% Similarity=0.285 Sum_probs=19.2
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 35 KITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSL 80 (207)
Q Consensus 35 kIts~A~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L 80 (207)
.|..+++..||-.|=.|-..||..+.--......++.|+..+|.+|
T Consensus 29 nvvk~DLI~rvdELt~E~e~l~~El~s~~~~~~r~~~ri~elEeEl 74 (77)
T 2w83_C 29 NIVKNDLIAKVDELTCEKDVLQGELEAVKQAKLKLEEKNRELEEEL 74 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555544444444444444444444443
No 107
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=72.95 E-value=30 Score=32.15 Aligned_cols=19 Identities=11% Similarity=0.205 Sum_probs=12.0
Q ss_pred HHHHHHHhhhhhHHHHHHH
Q 028596 37 TSIAISTRVSDLESEHSAL 55 (207)
Q Consensus 37 ts~A~atRVs~LEsE~~~L 55 (207)
+..-|..||.+|-.++..+
T Consensus 61 ~er~~~~rIe~L~~~L~~~ 79 (390)
T 1deq_A 61 VDQDFTSRINKLRDSLFNY 79 (390)
T ss_pred hhhhHHHHHHHHHHHHHHH
Confidence 3456777777776665555
No 108
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=72.50 E-value=15 Score=24.52 Aligned_cols=36 Identities=19% Similarity=0.372 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 67 AELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVR 106 (207)
Q Consensus 67 ~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~~sLa~TVK 106 (207)
.+|+.|+..|+.-.. +..++..-|+.||.-|-+-+|
T Consensus 6 ~eLE~r~k~le~~na----eLEervstLq~EN~mLRqvl~ 41 (42)
T 2oqq_A 6 SELENRVKDLENKNS----ELEERLSTLQNENQMLRHILK 41 (42)
T ss_dssp HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHhHHHHHHHhc
Confidence 455555554444333 666666677777776655443
No 109
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=72.09 E-value=24 Score=25.26 Aligned_cols=19 Identities=37% Similarity=0.517 Sum_probs=8.4
Q ss_pred HHhhhhhHHHHHHHHHHHH
Q 028596 42 STRVSDLESEHSALRSQLA 60 (207)
Q Consensus 42 atRVs~LEsE~~~LR~~La 60 (207)
-.++..||.++..|-.+|+
T Consensus 28 e~~Ie~LE~~i~~le~~la 46 (89)
T 2lw1_A 28 PQLLEDLEAKLEALQTQVA 46 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3344444444444444443
No 110
>1ydx_A Type I restriction enzyme specificity protein Mg4; type-I HSDS, DNA binding protein; 2.30A {Mycoplasma genitalium} SCOP: d.287.1.2 d.287.1.2
Probab=72.00 E-value=6.8 Score=33.15 Aligned_cols=40 Identities=23% Similarity=0.314 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhc
Q 028596 87 AQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSL 126 (207)
Q Consensus 87 a~ee~~kL~kE~~sLa~TVKkL~RDvaKLE~FKk~LmqSL 126 (207)
..++|.+..+--+.+-..+..+.+.+.+|+.+|+.||+.+
T Consensus 353 pl~eQ~~I~~~l~~id~~i~~~~~~i~~L~~lk~~LL~~l 392 (406)
T 1ydx_A 353 SFQLQRKAGKIVFLLDQKLDQYKKELSSLTVIRDTLLKKL 392 (406)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666666666777778888899999999999999976
No 111
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=71.83 E-value=20 Score=24.04 Aligned_cols=43 Identities=28% Similarity=0.376 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 028596 68 ELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEV 117 (207)
Q Consensus 68 eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDvaKLE~ 117 (207)
+|++++..||..+. ... .++++=-.....+-.||.+-+.+||.
T Consensus 2 dlEekv~~Le~~ld----~Lq---Tr~ArLlae~~ssq~KlKqRit~lE~ 44 (46)
T 3swy_A 2 ALEEKVEQLGSSLD----TLQ---TRFARLLAEYNATQMKMKQRLSQLES 44 (46)
T ss_dssp HHHHHHHHHHHHHH----HHH---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHH----HHH---HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 67788888888775 222 22222233344555677777777775
No 112
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=71.48 E-value=5.2 Score=25.51 Aligned_cols=27 Identities=33% Similarity=0.438 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028596 83 KLGQAQADKERLSKENEALTNTVRKLQ 109 (207)
Q Consensus 83 rL~~a~ee~~kL~kE~~sLa~TVKkL~ 109 (207)
|+.+..++...|-.||..|.+-|.+|.
T Consensus 1 RM~QLE~kVEeLl~~n~~Le~EV~RLk 27 (33)
T 3m48_A 1 RMAQLEAKVEELLSKNWNLENEVARLK 27 (33)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 345566667777777777777766654
No 113
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=71.18 E-value=31 Score=26.13 Aligned_cols=36 Identities=19% Similarity=0.216 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Q 028596 89 ADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQ 124 (207)
Q Consensus 89 ee~~kL~kE~~sLa~TVKkL~RDvaKLE~FKk~Lmq 124 (207)
++...|.+..+.+.+.=-+|+-.++-|+.-|..|+.
T Consensus 68 ~el~~lq~~l~~~~~~~~~l~~~~~~l~~Ek~~L~~ 103 (107)
T 2no2_A 68 RELQVLQGSLETSAQSEANWAAEFAELEKERDSLVS 103 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333334444444444444444444444445554444
No 114
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=71.13 E-value=13 Score=33.76 Aligned_cols=48 Identities=19% Similarity=0.205 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccccCCC
Q 028596 86 QAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLKDDEDAS 133 (207)
Q Consensus 86 ~a~ee~~kL~kE~~sLa~TVKkL~RDvaKLE~FKk~LmqSLq~D~~~~ 133 (207)
...++..+|.++...+...++.+...+-+.+..+|.|-..+++-..+-
T Consensus 14 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~rr~l~n~~~~l~gnI 61 (412)
T 3u06_A 14 HLRQRTEELLRCNEQQAAELETCKEQLFQSNMERKELHNTVMDLRDNI 61 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCE
Confidence 333333444444444444444444445555666666666666655443
No 115
>1d7m_A Cortexillin I; coiled-coil, coiled-coil trigger site, alpha helix, dimeriza contractIle protein; 2.70A {Dictyostelium discoideum} SCOP: h.1.10.1
Probab=71.08 E-value=33 Score=26.38 Aligned_cols=42 Identities=24% Similarity=0.405 Sum_probs=33.9
Q ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 35 KITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESI 76 (207)
Q Consensus 35 kIts~A~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~L 76 (207)
|.-.--++.....||+-...||.+-+++..+|.+||.|+...
T Consensus 17 K~S~eeL~kQk~eL~~~l~~l~~e~~~R~~~i~el~akidd~ 58 (101)
T 1d7m_A 17 KVSREQLIKQKDQLNSLLASLESEGAEREKRLRELEAKLDET 58 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445667778888889999999999999999999887643
No 116
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=70.95 E-value=18 Score=30.59 Aligned_cols=91 Identities=24% Similarity=0.300 Sum_probs=45.2
Q ss_pred hHHHHhhCCCCch---------hhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 15 PEEVLQVLPSDPF---------EQLDVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLG 85 (207)
Q Consensus 15 p~eilsvLP~DP~---------EQLdlArkIts~A~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~~rL~ 85 (207)
+++|..+|-.+|+ ++|.|.... ..=||=.|.++.+||++ +..||..+
T Consensus 33 ~~~V~~yL~~~PdFf~~~~~Ll~~L~lph~~-----~~aVSL~erQ~~~LR~r--------------~~~Le~~L----- 88 (252)
T 3e98_A 33 AEQVAAYLSQHPEFFVEHDELIPELRIPHQP-----GDAVSLVERQVRLLRER--------------NIEMRHRL----- 88 (252)
T ss_dssp ---------------------------------------CHHHHHHHHHHHHH--------------HHHHHHHH-----
T ss_pred HHHHHHHHHhCCHHHhhCHHHHHhCCCCCCC-----CCcccHHHHHHHHHHHH--------------HHHHHHHH-----
Confidence 5678889988886 355554432 12255566666666653 33333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHH---HHHHHHHHHHhhcccccCC
Q 028596 86 QAQADKERLSKENEALTNTVRKLQRDVS---KLEVFRKTLVQSLKDDEDA 132 (207)
Q Consensus 86 ~a~ee~~kL~kE~~sLa~TVKkL~RDva---KLE~FKk~LmqSLq~D~~~ 132 (207)
.+....+.+|+.+.+.+..|...+- -|+.|-+.|..+|+++=.-
T Consensus 89 ---~~Li~~A~~Ne~l~~~~~~l~l~LL~a~sl~~l~~~L~~~l~~~F~l 135 (252)
T 3e98_A 89 ---SQLMDVARENDRLFDKTRRLVLDLLDATSLEDVVSTVEDSLRHEFQV 135 (252)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHTSCC
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHCCC
Confidence 2445567788999999999988887 6888888898888866543
No 117
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=70.93 E-value=51 Score=37.69 Aligned_cols=9 Identities=22% Similarity=0.593 Sum_probs=4.4
Q ss_pred HHhhccccc
Q 028596 122 LVQSLKDDE 130 (207)
Q Consensus 122 LmqSLq~D~ 130 (207)
|+.+|..|.
T Consensus 2078 Li~gL~~Ek 2086 (3245)
T 3vkg_A 2078 LLDNLNSER 2086 (3245)
T ss_dssp HHHHHHHHH
T ss_pred HHHhhhhcc
Confidence 455554443
No 118
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=70.83 E-value=2.6 Score=29.21 Aligned_cols=28 Identities=29% Similarity=0.516 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 028596 87 AQADKERLSKENEALTNTVRKLQRDVSK 114 (207)
Q Consensus 87 a~ee~~kL~kE~~sLa~TVKkL~RDvaK 114 (207)
...+++.|.+...+|..-+-.|.|||++
T Consensus 29 lendnanlekdianlekdianlerdvar 56 (56)
T 3he4_A 29 LENDNANLEKDIANLEKDIANLERDVAR 56 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HhcccchHHHHHHHHHHHHHHHHHhhcC
Confidence 3456677777777777777777777653
No 119
>3m91_A Proteasome-associated ATPase; coil COIL alpha helix, ATP-binding, chaperone, nucleotide-BI proteasome, S-nitrosylation; 1.80A {Mycobacterium tuberculosis} PDB: 3m9h_A
Probab=70.78 E-value=19 Score=24.49 Aligned_cols=30 Identities=17% Similarity=0.271 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 028596 86 QAQADKERLSKENEALTNTVRKLQRDVSKL 115 (207)
Q Consensus 86 ~a~ee~~kL~kE~~sLa~TVKkL~RDvaKL 115 (207)
.....|.+|.+-...--+.+.+|..+|.+|
T Consensus 20 ~L~~rN~rL~~~L~~AR~el~~Lkeele~L 49 (51)
T 3m91_A 20 SLAARNSKLMETLKEARQQLLALREEVDRL 49 (51)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444455544444445555555555544
No 120
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=70.49 E-value=22 Score=29.46 Aligned_cols=34 Identities=15% Similarity=0.286 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 028596 86 QAQADKERLSKENEALTNTVRKLQRDVSKLEVFR 119 (207)
Q Consensus 86 ~a~ee~~kL~kE~~sLa~TVKkL~RDvaKLE~FK 119 (207)
...+....|.+++..|...+..|.....|++.|-
T Consensus 60 ~L~~~~~~Le~~~~~L~~~i~~l~~~~~k~~e~~ 93 (174)
T 2p22_A 60 HLRAVEQAIEQTMHSLNAQIDVLTANRAKVQQFS 93 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666677777777777777666666663
No 121
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=70.35 E-value=35 Score=33.08 Aligned_cols=15 Identities=33% Similarity=0.465 Sum_probs=5.3
Q ss_pred HHHHHHHHhhhHHHH
Q 028596 101 LTNTVRKLQRDVSKL 115 (207)
Q Consensus 101 La~TVKkL~RDvaKL 115 (207)
|.+.|+.+.-++.||
T Consensus 136 LQsnLedq~~kIQRL 150 (562)
T 3ghg_A 136 LQKNVRAQLVDMKRL 150 (562)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 122
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=70.00 E-value=64 Score=30.84 Aligned_cols=80 Identities=14% Similarity=0.188 Sum_probs=40.9
Q ss_pred HHHHHHHhhhhhHHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 37 TSIAISTRVSDLESEHSA--------------LRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALT 102 (207)
Q Consensus 37 ts~A~atRVs~LEsE~~~--------------LR~~LaEKd~~i~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~~sLa 102 (207)
+..-+..||.+|-..+.. +...+.++...+.+.+..++++-.+|..|+.-..+..+.=..-...|.
T Consensus 59 qerdv~~rI~kLkn~L~~~s~s~~~s~~y~~~~~~~lk~~~~q~~dndn~~~e~S~eLe~ri~yIK~kVd~qi~~IrvLq 138 (491)
T 1m1j_A 59 TDQNYSQRIDNIRQQLADSQNKYKTSNRVIVETINILKPGLEGAQQLDENYGHVSTELRRRIVTLKQRVATQVNRIKALQ 138 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444566777666655444 355666677777777777766666665333222222211113333444
Q ss_pred HHHHHHhhhHHHHH
Q 028596 103 NTVRKLQRDVSKLE 116 (207)
Q Consensus 103 ~TVKkL~RDvaKLE 116 (207)
+.|+.+.-++.|||
T Consensus 139 ~~l~~q~skIQRLE 152 (491)
T 1m1j_A 139 NSIQEQVVEMKRLE 152 (491)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444444
No 123
>3m0d_C TNF receptor-associated factor 1; trimeric helix coiled coiled, acetylation, alternative splic apoptosis, coiled coil, cytoplasm; 2.80A {Homo sapiens}
Probab=69.80 E-value=19 Score=24.81 Aligned_cols=46 Identities=13% Similarity=0.170 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 33 ARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSS 79 (207)
Q Consensus 33 ArkIts~A~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~ 79 (207)
..+|++. ....|..+..+++.+-++...=.+.|..|+.|++.+|..
T Consensus 18 lEnIv~~-l~~eve~~~~~lea~~rq~~~d~~~Ie~Le~kv~~l~~~ 63 (65)
T 3m0d_C 18 FENIVAV-LNKEVEASHLALATSIHQSQLDRERILSLEQRVVELQQT 63 (65)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHH-HhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhh
Confidence 3555554 444555555555555333333355556666666666543
No 124
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=69.65 E-value=7.9 Score=34.63 Aligned_cols=36 Identities=14% Similarity=0.108 Sum_probs=17.1
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 43 TRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYS 78 (207)
Q Consensus 43 tRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~ 78 (207)
..|...+.++..|+.+|..-+..|.+|+.++..|+.
T Consensus 19 ~~i~~~~~~i~~L~~~l~~~~~~i~~l~~~i~~l~~ 54 (323)
T 1lwu_C 19 QIGVSHDAQIQELSEMWRVNQQFVTRLQQQLVDIRQ 54 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444445555555555444444444444444443
No 125
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=69.48 E-value=7.3 Score=24.97 Aligned_cols=28 Identities=32% Similarity=0.399 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028596 83 KLGQAQADKERLSKENEALTNTVRKLQR 110 (207)
Q Consensus 83 rL~~a~ee~~kL~kE~~sLa~TVKkL~R 110 (207)
|+.+..+..++|..+|..|++.|.+|..
T Consensus 2 RMnQLEdkVEeLl~~~~~Le~eV~RL~~ 29 (34)
T 2hy6_A 2 KVKQLADAVEELASANYHLANAVARLAK 29 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4556667777888888888888777653
No 126
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=69.38 E-value=36 Score=28.27 Aligned_cols=17 Identities=24% Similarity=0.409 Sum_probs=7.7
Q ss_pred hhhhHHHHHHHHHHHHH
Q 028596 45 VSDLESEHSALRSQLAE 61 (207)
Q Consensus 45 Vs~LEsE~~~LR~~LaE 61 (207)
+..+++++..++.++..
T Consensus 71 ~~~~~a~l~~~~a~l~~ 87 (341)
T 3fpp_A 71 IKEVEATLMELRAQRQQ 87 (341)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444444443
No 127
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=69.34 E-value=27 Score=32.77 Aligned_cols=61 Identities=16% Similarity=0.259 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccc
Q 028596 67 AELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLKD 128 (207)
Q Consensus 67 ~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDvaKLE~FKk~LmqSLq~ 128 (207)
.+|+.+.+.+-.++ ++++..-++...|..|-..|...++.|...+..+|.=-..++.+|-+
T Consensus 50 ~~l~~~rn~~sk~i-~~~k~~~~~~~~l~~~~~~l~~~i~~le~~~~~~~~~~~~~l~~iPN 110 (485)
T 3qne_A 50 DEHNKKLNSVQKEI-GKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEADKNLRSKINQVGN 110 (485)
T ss_dssp HHHHHHHHHHHHHH-HHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHH-HHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 33444444444433 23333334556777788888888888888888888877778877743
No 128
>4dk0_A Putative MACA; alpha-hairpin, lipoyl, beta-barrel, periplasmic protein, MEM protein; 3.50A {Aggregatibacter actinomycetemcomitans} PDB: 4dk1_A
Probab=68.97 E-value=23 Score=29.76 Aligned_cols=15 Identities=13% Similarity=0.240 Sum_probs=6.6
Q ss_pred hhhHHHHHHHHHHHH
Q 028596 46 SDLESEHSALRSQLA 60 (207)
Q Consensus 46 s~LEsE~~~LR~~La 60 (207)
..+++++..++.++.
T Consensus 73 ~~~~a~l~~~~a~l~ 87 (369)
T 4dk0_A 73 NTRKAALASYQAQLV 87 (369)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444443
No 129
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=68.43 E-value=33 Score=25.26 Aligned_cols=60 Identities=20% Similarity=0.359 Sum_probs=37.5
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028596 44 RVSDLESEHSALRSQLAEKDSRIAEL-QSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQR 110 (207)
Q Consensus 44 RVs~LEsE~~~LR~~LaEKd~~i~eL-q~rvs~Le~~L~~rL~~a~ee~~kL~kE~~sLa~TVKkL~R 110 (207)
-=..||.++..++.+-.-. +..+ +..+..|-. .+..+..++.+|.-|.++|...+..+..
T Consensus 31 qN~~Le~~i~~l~~~~~~~---~~~~ye~~i~~Lr~----~i~~~~~ek~~l~~e~dnl~~~~~~~k~ 91 (93)
T 3s4r_A 31 QNKILLAELEQLKGQGKSR---LGDLYEEEMRELRR----QVDQLTNDKARVEVERDNLAEDIMRLRE 91 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccCCC---cHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455788888887764322 2222 233333333 3347778888888888888888877754
No 130
>4dyl_A Tyrosine-protein kinase FES/FPS; structural genomics, structural genomics consortium, BCR, CR associated substrate, transferase; 2.18A {Homo sapiens}
Probab=68.31 E-value=36 Score=30.12 Aligned_cols=88 Identities=11% Similarity=0.169 Sum_probs=56.8
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 028596 37 TSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS--DKLGQAQADKERLSKENEALTNTVRKLQRDVSK 114 (207)
Q Consensus 37 ts~A~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~--~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDvaK 114 (207)
+--.|..|+++++.++..++..+..|.+.+..|+..+..-..-.. ..+ ...-...-|+ .+..+|--|...-+|
T Consensus 303 ~~~~lq~~L~~~~~~l~~~~~~~~~k~~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~----e~~~~~~~~~~~~~~ 377 (406)
T 4dyl_A 303 TVESVQHTLTSVTDELAVATEMVFRRQEMVTQLQQELRNEEENTHPRERV-QLLGKRQVLQ----EALQGLQVALCSQAK 377 (406)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCGG-GGHHHHHHHH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcchHH-HHHhHHhhHH----HHHHHHHHHHhHHHH
Confidence 344788999999999999999999999999999877654422111 010 0000111111 123456667777788
Q ss_pred HHHHHHHHHhhcccc
Q 028596 115 LEVFRKTLVQSLKDD 129 (207)
Q Consensus 115 LE~FKk~LmqSLq~D 129 (207)
|++=|-.|-+.|++-
T Consensus 378 ~~~q~~~~~~~~~~~ 392 (406)
T 4dyl_A 378 LQAQQELLQTKLEHL 392 (406)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhc
Confidence 887777776666654
No 131
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=67.94 E-value=32 Score=31.57 Aligned_cols=66 Identities=15% Similarity=0.201 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccc
Q 028596 62 KDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLKD 128 (207)
Q Consensus 62 Kd~~i~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDvaKLE~FKk~LmqSLq~ 128 (207)
-...+.+|+.+.+.+..++. +++..-++...|..|-..|...+|.|...+..++.=-..++.+|-+
T Consensus 43 ~~~~~~~l~~~~n~~sk~i~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipN 108 (455)
T 2dq0_A 43 KLKEINRLRHERNKIAVEIG-KRRKKGEPVDELLAKSREIVKRIGELENEVEELKKKIDYYLWRLPN 108 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HHHTSCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHH-HhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 33344445555554444443 2333334556777788888888888888888888877778877754
No 132
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=67.94 E-value=6.7 Score=24.99 Aligned_cols=27 Identities=4% Similarity=0.160 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028596 83 KLGQAQADKERLSKENEALTNTVRKLQ 109 (207)
Q Consensus 83 rL~~a~ee~~kL~kE~~sLa~TVKkL~ 109 (207)
|+.+..+..+.|..+|..|.+.|.+|.
T Consensus 1 RMnQLEdKvEeLl~~~~~Le~EV~RLk 27 (33)
T 3c3g_A 1 RMKXIEXKLXEIXSKXYHXENXLARIK 27 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 345666777777888887777766553
No 133
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=67.87 E-value=6.9 Score=25.08 Aligned_cols=27 Identities=11% Similarity=0.263 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028596 83 KLGQAQADKERLSKENEALTNTVRKLQ 109 (207)
Q Consensus 83 rL~~a~ee~~kL~kE~~sLa~TVKkL~ 109 (207)
|+.+..++.+.|..+|..|.+-|.+|.
T Consensus 2 RM~QLEdKVEeLl~~n~~Le~EV~RLk 28 (34)
T 1uo4_A 2 RMKQIEDKGEEILSKLYHIENELARIK 28 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 556677777788888888877776664
No 134
>3m0a_A TNF receptor-associated factor 2; TRAF2: CIAP2 and the TRAF1: TRAF2: CIAP2 complexes, apoptosi coil, cytoplasm, metal-binding; 2.61A {Homo sapiens} PDB: 3m0d_A 3m06_A
Probab=67.53 E-value=26 Score=23.68 Aligned_cols=38 Identities=16% Similarity=0.232 Sum_probs=14.9
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYS 78 (207)
Q Consensus 41 ~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~ 78 (207)
...-|..+..+++.+.++...=...|+.|+.++..++.
T Consensus 24 l~~~v~~~~~~le~~~~q~~~~~~~i~~Le~k~~~l~~ 61 (66)
T 3m0a_A 24 LNREVERVAMTAEACSRQHRLDQDKIEALSSKVQQLER 61 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHhhhhHHHhHHHHHHHHHHHHHH
Confidence 33333333334443433333323344444444444443
No 135
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=66.83 E-value=8.7 Score=26.10 Aligned_cols=37 Identities=22% Similarity=0.310 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 61 EKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEAL 101 (207)
Q Consensus 61 EKd~~i~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~~sL 101 (207)
-|-..+.+|+.++..|+.+-. ....+...|..|+..|
T Consensus 19 rKk~~~~~Le~~v~~L~~~n~----~L~~~v~~L~~e~~~L 55 (62)
T 1jnm_A 19 RKLERIARLEEKVKTLKAQNS----ELASTANMLREQVAQL 55 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 355666777766666555443 3333444444444333
No 136
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=66.52 E-value=15 Score=33.33 Aligned_cols=55 Identities=24% Similarity=0.214 Sum_probs=36.1
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028596 45 VSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQR 110 (207)
Q Consensus 45 Vs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~~sLa~TVKkL~R 110 (207)
...||.|+..||++..+-++.|..++..+..++.+| .+...+|..|-|++-.|..
T Consensus 5 ~~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l-----------~~~~~~rr~l~n~~~~l~g 59 (412)
T 3u06_A 5 HAALSTEVVHLRQRTEELLRCNEQQAAELETCKEQL-----------FQSNMERKELHNTVMDLRD 59 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHhCC
Confidence 356777777777777777777777766655555444 3455667777777766654
No 137
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=66.23 E-value=7.5 Score=24.91 Aligned_cols=27 Identities=22% Similarity=0.343 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028596 83 KLGQAQADKERLSKENEALTNTVRKLQ 109 (207)
Q Consensus 83 rL~~a~ee~~kL~kE~~sLa~TVKkL~ 109 (207)
|+.+..++...|-.+|+.|.+.|.+|.
T Consensus 2 RMnQLE~kVEeLl~~n~~Le~eV~rLk 28 (34)
T 2oxj_A 2 RMXQLEXKVXELLXKNXHLEXEVXRLK 28 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 445556666777777777777666653
No 138
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=66.16 E-value=43 Score=28.77 Aligned_cols=54 Identities=15% Similarity=0.255 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028596 56 RSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQR 110 (207)
Q Consensus 56 R~~LaEKd~~i~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~~sLa~TVKkL~R 110 (207)
|..|.|--.++..|.+++..++.++ ++|+.-+++...|+++-.-|+..++.|..
T Consensus 107 R~AL~eaLeEN~~Lh~~ie~l~eEi-~~LkeEn~eLkeLae~~q~la~vi~~l~~ 160 (209)
T 2wvr_A 107 RKALYEALKENEKLHKEIEQKDNEI-ARLKKENKELAEVAEHVQYMAELIERLNG 160 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444455555666666666666666 35555556666666666666666666543
No 139
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=66.02 E-value=16 Score=27.03 Aligned_cols=22 Identities=18% Similarity=0.412 Sum_probs=9.2
Q ss_pred HHHHHhhhhhHHHHHHHHHHHH
Q 028596 39 IAISTRVSDLESEHSALRSQLA 60 (207)
Q Consensus 39 ~A~atRVs~LEsE~~~LR~~La 60 (207)
+.+..||..||.|-..||.++.
T Consensus 39 ~e~~~r~~~Le~EN~~Lr~~v~ 60 (87)
T 1hjb_A 39 LETQHKVLELTAENERLQKKVE 60 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444333
No 140
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=65.95 E-value=7.7 Score=24.86 Aligned_cols=27 Identities=11% Similarity=0.157 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028596 83 KLGQAQADKERLSKENEALTNTVRKLQ 109 (207)
Q Consensus 83 rL~~a~ee~~kL~kE~~sLa~TVKkL~ 109 (207)
|+.+..+....|..+|..|.+.|.+|.
T Consensus 2 RMnQLEdKVEeLl~~~~~Le~EV~RLk 28 (34)
T 3c3f_A 2 RMXQIEXKLEXILSXLYHXENEXARIX 28 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 455666777777788877777766653
No 141
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=65.79 E-value=35 Score=24.68 Aligned_cols=60 Identities=10% Similarity=0.192 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 028596 58 QLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKT 121 (207)
Q Consensus 58 ~LaEKd~~i~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDvaKLE~FKk~ 121 (207)
.+..|+..+..|++++...+.... ...+.+.+|..|++.|..++....--.++|..-|..
T Consensus 15 Em~~~eeel~~lke~l~k~e~~rk----ele~~~~~l~~ek~~L~~ql~eaEe~~~~L~~~K~e 74 (89)
T 3bas_A 15 EMKEQLKQMDKMKEDLAKTERIKK----ELEEQNVTLLEQKNDLFGSMKQLEDKVEELLSKNYH 74 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 344566666666666665555444 666777777777777776643333344444444433
No 142
>1ydx_A Type I restriction enzyme specificity protein Mg4; type-I HSDS, DNA binding protein; 2.30A {Mycoplasma genitalium} SCOP: d.287.1.2 d.287.1.2
Probab=65.54 E-value=11 Score=31.81 Aligned_cols=39 Identities=8% Similarity=0.188 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhc
Q 028596 88 QADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSL 126 (207)
Q Consensus 88 ~ee~~kL~kE~~sLa~TVKkL~RDvaKLE~FKk~LmqSL 126 (207)
.++|.+..+--+.+-..+..+++-+++|+.+|+.||+.+
T Consensus 166 l~eQ~~I~~~l~~~d~~i~~~~~~~~~l~~~k~~l~~~~ 204 (406)
T 1ydx_A 166 KNEQHAIANTLSVFDERLENLASLIEINRKLRDEYAHKL 204 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555666666677777888888888888865
No 143
>3ibp_A Chromosome partition protein MUKB; structural maintenance of chromosomes, SMC, condensin, chromosome segregation, hinge, dimerization domain; 3.10A {Escherichia coli}
Probab=65.03 E-value=50 Score=29.73 Aligned_cols=22 Identities=5% Similarity=0.191 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHHHHhhhHHH
Q 028596 93 RLSKENEALTNTVRKLQRDVSK 114 (207)
Q Consensus 93 kL~kE~~sLa~TVKkL~RDvaK 114 (207)
++..+++.++..-..|.+++.+
T Consensus 80 e~~~~Rd~~a~~k~~Le~~ier 101 (302)
T 3ibp_A 80 EAIVERDEVGARKNAVDEEIER 101 (302)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555544444
No 144
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=65.00 E-value=27 Score=23.55 Aligned_cols=35 Identities=29% Similarity=0.416 Sum_probs=27.5
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 43 TRVSDLESEHSALRSQLAEKDSRIAELQSQIESIY 77 (207)
Q Consensus 43 tRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le 77 (207)
.-|.+||.|-..|+.+-.-|...|+-|++.+..|-
T Consensus 10 nevaslenenetlkkknlhkkdliaylekeianlr 44 (49)
T 3he5_A 10 NEVASLENENETLKKKNLHKKDLIAYLEKEIANLR 44 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhcccHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 45778888889998888888888888877766553
No 145
>3thf_A Protein shroom; coiled-coil, anti-parallel, helical, RHO-kinase, actin-bindi protein binding, cytoskeleton regulator; 2.70A {Drosophila melanogaster}
Probab=64.99 E-value=49 Score=27.98 Aligned_cols=57 Identities=21% Similarity=0.330 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 028596 65 RIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTL 122 (207)
Q Consensus 65 ~i~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDvaKLE~FKk~L 122 (207)
.|++|. ||..|=-.|.+||....--......|+.+|...-+.|.++..-=+.+|.+|
T Consensus 71 FigDLe-kVv~LLLsLs~RLaRvenaL~~~~~Er~sL~~K~~~L~~Q~EDAkeLKe~l 127 (190)
T 3thf_A 71 HVDAVG-NITSLLLSLSERLAQTESSLETRQQERGALESKRDLLYEQMEEAQRLKSDI 127 (190)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHHhHHHHHHHHHccChhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456663 666666666677777776666779999999999999988888777777665
No 146
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=64.95 E-value=17 Score=26.20 Aligned_cols=50 Identities=16% Similarity=0.250 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 028596 64 SRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEV 117 (207)
Q Consensus 64 ~~i~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDvaKLE~ 117 (207)
+.|.+|+.|++-.|..+. ...+...+.+++.+.|...++.|...+..++.
T Consensus 14 ~Ri~~LE~klAfqE~tIe----eLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~~ 63 (78)
T 3efg_A 14 ARLVELETRLSFQEQALT----ELSEALADARLTGARNAELIRHLLEDLGKVRS 63 (78)
T ss_dssp HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHTC-----
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 344455555554444443 66666677777777777777777766665553
No 147
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=64.69 E-value=36 Score=24.36 Aligned_cols=23 Identities=13% Similarity=0.405 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 028596 59 LAEKDSRIAELQSQIESIYSSLS 81 (207)
Q Consensus 59 LaEKd~~i~eLq~rvs~Le~~L~ 81 (207)
|..=...|..|+.++..|+..|.
T Consensus 24 le~le~~Ie~LE~~i~~le~~la 46 (89)
T 2lw1_A 24 LEQLPQLLEDLEAKLEALQTQVA 46 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 44444556666666666666664
No 148
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=64.55 E-value=9 Score=24.55 Aligned_cols=27 Identities=19% Similarity=0.191 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028596 83 KLGQAQADKERLSKENEALTNTVRKLQ 109 (207)
Q Consensus 83 rL~~a~ee~~kL~kE~~sLa~TVKkL~ 109 (207)
|+.+..+..+.|.+++..|++.|.+|.
T Consensus 2 RMnQledKvEel~~~~~~l~nEv~Rl~ 28 (34)
T 2r2v_A 2 KLKQVADKLEEVASKLYHNANELARVA 28 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 456667777788888888888777664
No 149
>3mov_A Lamin-B1; LMNB1, B-type lamins, intermediate filament (IF), nucleus, coiled coil, structural genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} PDB: 3tyy_A
Probab=64.17 E-value=16 Score=27.20 Aligned_cols=39 Identities=10% Similarity=0.112 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 028596 84 LGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTL 122 (207)
Q Consensus 84 L~~a~ee~~kL~kE~~sLa~TVKkL~RDvaKLE~FKk~L 122 (207)
+.........|..+...+-..+....++-..|=+.|-.|
T Consensus 39 ~~~~q~~i~~lE~eL~~~r~e~~~ql~EYq~LlnvKl~L 77 (95)
T 3mov_A 39 KDNSRRMLTDKEREMAEIRDQMQQQLNDYEQLLDVKLAL 77 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555555555555555556655555555544
No 150
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=63.98 E-value=27 Score=23.49 Aligned_cols=33 Identities=18% Similarity=0.354 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 028596 62 KDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDV 112 (207)
Q Consensus 62 Kd~~i~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDv 112 (207)
|..++.+|+.++. .|..||..|...+..|...+
T Consensus 20 Kk~~~~~LE~~v~------------------~L~~eN~~L~~~~~~L~~~~ 52 (55)
T 1dh3_A 20 KKEYVKSLENRVA------------------VLENQNKTLIEELKALKDLY 52 (55)
T ss_dssp HHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHh
Confidence 4466777766654 34555666666665555443
No 151
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=63.56 E-value=9.7 Score=33.38 Aligned_cols=43 Identities=21% Similarity=0.241 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Q 028596 82 DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQ 124 (207)
Q Consensus 82 ~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDvaKLE~FKk~Lmq 124 (207)
.|++....++..|+..|..|..+.|.+.+++.+|+.=-+.|-+
T Consensus 54 ~~l~eL~~ql~~L~arNe~L~~~Lk~ar~El~~LkeElerL~s 96 (251)
T 3m9b_A 54 RDIHQLEARIDSLAARNSKLMETLKEARQQLLALREEVDRLGQ 96 (251)
T ss_dssp HHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4677888888888888888999999999988888765555543
No 152
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=63.46 E-value=9.2 Score=24.35 Aligned_cols=26 Identities=15% Similarity=0.078 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028596 84 LGQAQADKERLSKENEALTNTVRKLQ 109 (207)
Q Consensus 84 L~~a~ee~~kL~kE~~sLa~TVKkL~ 109 (207)
+.+..+..++|..+|..|.+.|.+|.
T Consensus 2 MnQLEdKVEell~~~~~le~EV~Rl~ 27 (33)
T 2wq1_A 2 MKQLEDKIEENTSKIYHNTNEIARNT 27 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 45566666777777777777766654
No 153
>1fzc_C Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_C* 1fza_C* 1fze_C* 1fzf_C* 1fzg_C* 2xnx_C 2xny_C 3e1i_C* 2hlo_C* 1n8e_C 1n86_C* 2q9i_C* 2z4e_C* 2h43_C* 2hod_C* 2hpc_C* 3h32_C* 1re3_C* 1ltj_C* 1lt9_C* ...
Probab=63.46 E-value=6.6 Score=35.06 Aligned_cols=40 Identities=10% Similarity=0.206 Sum_probs=23.6
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSL 80 (207)
Q Consensus 41 ~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L 80 (207)
|..+|..+|+++..|+..|.+.+..|.+|+.++..|+..+
T Consensus 9 lE~~Il~~~~~i~~L~~~l~~~~~ki~~L~~~i~~l~~~~ 48 (319)
T 1fzc_C 9 YEASILTHDSSIRYLQEIYNSNNQKIVNLKEKVAQLEAQC 48 (319)
T ss_dssp -CTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHhhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455666666677776666666666666665555554433
No 154
>4b6x_A AVRRPS4, avirulence protein; toxin, type 3 secreted effector; 2.20A {Pseudomonas syringae PV}
Probab=62.73 E-value=36 Score=25.70 Aligned_cols=57 Identities=23% Similarity=0.378 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH----HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028596 53 SALRSQLAEKDSRIAELQSQIESIYSS----LS----DKLGQAQADKERLSKENEALTNTVRKLQ 109 (207)
Q Consensus 53 ~~LR~~LaEKd~~i~eLq~rvs~Le~~----L~----~rL~~a~ee~~kL~kE~~sLa~TVKkL~ 109 (207)
..||+.+.+|.-.|..|.+.+.....+ ++ -.|.+|+.+...|+..-..|.+--++.|
T Consensus 25 ~~lrq~I~DKQ~~i~~Lt~eLq~A~~eaNpaeIA~~~~~L~qAraDL~~l~r~~av~g~E~RRIN 89 (90)
T 4b6x_A 25 AALRQEIEDKQLMVNNLTDELQDAIDEANPAEIANTSQQLRHARADLADLQRRFAVLRNEDRRIN 89 (90)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhhhhcc
Confidence 467888888888887765544433221 11 3445555555555555555544444443
No 155
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=62.50 E-value=8.9 Score=24.85 Aligned_cols=28 Identities=29% Similarity=0.417 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028596 84 LGQAQADKERLSKENEALTNTVRKLQRD 111 (207)
Q Consensus 84 L~~a~ee~~kL~kE~~sLa~TVKkL~RD 111 (207)
+.+..++..+|..+|..|.+.|.+|..-
T Consensus 3 MnQLE~kVEeLl~~~~~Le~EV~RL~~l 30 (36)
T 1kd8_A 3 VKQLEAEVEEIESEVWHLENEVARLEKE 30 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3444555556666666666666555443
No 156
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=62.13 E-value=9.5 Score=27.37 Aligned_cols=16 Identities=38% Similarity=0.497 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 028596 55 LRSQLAEKDSRIAELQ 70 (207)
Q Consensus 55 LR~~LaEKd~~i~eLq 70 (207)
+...+..|+..|.+|+
T Consensus 16 ~~~~i~~Kde~I~eLE 31 (67)
T 1zxa_A 16 FAKILMLKEERIKELE 31 (67)
T ss_dssp -CHHHHHHHHHHHHHH
T ss_pred HHHHHHccHHHHHHHH
Confidence 3344444554444444
No 157
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=61.62 E-value=48 Score=24.76 Aligned_cols=51 Identities=18% Similarity=0.272 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 57 SQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKL 108 (207)
Q Consensus 57 ~~LaEKd~~i~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~~sLa~TVKkL 108 (207)
..|.+--..+..|.+++..++.++ ++|+.-.++...|+..-.-|+.-+++|
T Consensus 31 ~AL~eaL~EN~~Lh~~ie~~~eEi-~~Lk~en~~L~elA~~~q~la~~i~~L 81 (83)
T 1wlq_A 31 KALYEALKENEKLHKEIEQKDSEI-ARLRKENKDLAEVAEHVQYMAEVIERL 81 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHTHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444455566666666666665 345555555555555555666655555
No 158
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=61.37 E-value=44 Score=24.24 Aligned_cols=14 Identities=29% Similarity=0.522 Sum_probs=5.6
Q ss_pred HHHHHHHHHhhhHH
Q 028596 100 ALTNTVRKLQRDVS 113 (207)
Q Consensus 100 sLa~TVKkL~RDva 113 (207)
.|...|..|.-+++
T Consensus 67 dLE~kvesL~eEl~ 80 (86)
T 3swk_A 67 DLERKVESLQEEIA 80 (86)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444433
No 159
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=60.14 E-value=63 Score=25.66 Aligned_cols=49 Identities=31% Similarity=0.477 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 52 HSALRSQLAEKDSR----IAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNT 104 (207)
Q Consensus 52 ~~~LR~~LaEKd~~----i~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~~sLa~T 104 (207)
+..||..|.++-.. +.+|+..+..|...|+ .+..+.++|.+++..|...
T Consensus 55 V~tL~~SL~~ekaq~q~~vqeLqgEI~~Lnq~Lq----~a~ae~erlr~~~~~~~~r 107 (121)
T 3mq7_A 55 VMALMASLDAEKAQGQKKVEELEGEITTLNHKLQ----DASAEVERLRRENQVLSVR 107 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhhchhhhhH
Confidence 34455555543333 4455555554444444 5555666666666555443
No 160
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=60.12 E-value=38 Score=24.20 Aligned_cols=34 Identities=38% Similarity=0.628 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 028596 84 LGQAQADKERLSKENEALTNTVRKLQRDVSKLEV 117 (207)
Q Consensus 84 L~~a~ee~~kL~kE~~sLa~TVKkL~RDvaKLE~ 117 (207)
|..++.+..+|-+-|++|..-++.+++.+.+|-+
T Consensus 22 LaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQs 55 (63)
T 2w6a_A 22 LATSEAKVQQLMKVNSSLSDELRKLQREIHKLQA 55 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHh
Confidence 4466666777777777777777777777766644
No 161
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=59.84 E-value=87 Score=28.77 Aligned_cols=32 Identities=6% Similarity=0.105 Sum_probs=18.6
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQS 71 (207)
Q Consensus 40 A~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~ 71 (207)
.+.+.+..||.-+..|-..-.+-...+..|+.
T Consensus 35 ~V~~~l~~LE~~l~elsn~ts~v~~Lvk~iq~ 66 (409)
T 1m1j_C 35 TTDGELLEIEGLLQQATNSTGSIEYLIQHIKT 66 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667777776666555555555555544443
No 162
>4aj5_1 SKA3, spindle and kinetochore-associated protein 3; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}
Probab=59.69 E-value=58 Score=25.11 Aligned_cols=73 Identities=18% Similarity=0.264 Sum_probs=44.0
Q ss_pred hhhHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 028596 46 SDLESEHSALRSQLAEKD--------SRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEV 117 (207)
Q Consensus 46 s~LEsE~~~LR~~LaEKd--------~~i~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDvaKLE~ 117 (207)
..||.|..+|.+.|..-| +..++|..-|..|-..++..|..+.-+.+.+-.=..+---..++...|+.+|+.
T Consensus 16 ~tLe~Eta~L~~al~~edsd~E~~~~rilhdl~seV~~LK~dv~~~L~k~~~e~qe~~~FIKa~kvL~~rns~DI~~ire 95 (101)
T 4aj5_1 16 STLDCETARLQRALDGEESDFEDYPMRILYDLHSEVQTLKDDINILLDKARLENQEGIDFIKATKVLMEKNSMDIMKIRE 95 (101)
T ss_dssp HHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 578999999999888322 345788888888877777444444433333222222222233445567777766
Q ss_pred H
Q 028596 118 F 118 (207)
Q Consensus 118 F 118 (207)
|
T Consensus 96 ~ 96 (101)
T 4aj5_1 96 Y 96 (101)
T ss_dssp H
T ss_pred H
Confidence 5
No 163
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=59.09 E-value=13 Score=23.30 Aligned_cols=25 Identities=36% Similarity=0.533 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHH
Q 028596 93 RLSKENEALTNTVRKLQRDVSKLEV 117 (207)
Q Consensus 93 kL~kE~~sLa~TVKkL~RDvaKLE~ 117 (207)
.|.+|-..|..-|.+|+.-|.+||.
T Consensus 3 rlee~~r~l~~ivq~lq~r~drle~ 27 (32)
T 2akf_A 3 RLEEDVRNLNAIVQKLQERLDRLEE 27 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666667777777777777764
No 164
>4afl_A P29ING4, inhibitor of growth protein 4; cell cycle, tumour suppressor, chromatin remodelling; 2.28A {Homo sapiens}
Probab=59.06 E-value=49 Score=24.01 Aligned_cols=76 Identities=12% Similarity=0.254 Sum_probs=52.3
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---------------DKLGQAQADKERLSKENEALTNTV 105 (207)
Q Consensus 41 ~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~---------------~rL~~a~ee~~kL~kE~~sLa~TV 105 (207)
|--.|..|=.|+.+.=..+.|+|....++..++...-..+. .++.....+...+++||=.|++++
T Consensus 9 yld~ie~LP~El~r~~~~irelD~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~l~~I~~~~~~~~~l~dEKv~lA~~~ 88 (104)
T 4afl_A 9 YLDSIENLPFELQRNFQLMRDLDQRTEDLKAEIDKLATEYMSSARSLSSEEKLALLKQIQEAYGKCKEFGDDKVQLAMQT 88 (104)
T ss_dssp HHHSGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567778888888888888888888877777665544332 345566777888889998888875
Q ss_pred HH-HhhhHHHHH
Q 028596 106 RK-LQRDVSKLE 116 (207)
Q Consensus 106 Kk-L~RDvaKLE 116 (207)
-- +.|.+.+|+
T Consensus 89 ~dlvdkhirrLD 100 (104)
T 4afl_A 89 YEMVDKHIRRLD 100 (104)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 43 344555554
No 165
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=58.81 E-value=13 Score=23.83 Aligned_cols=27 Identities=11% Similarity=0.326 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028596 83 KLGQAQADKERLSKENEALTNTVRKLQ 109 (207)
Q Consensus 83 rL~~a~ee~~kL~kE~~sLa~TVKkL~ 109 (207)
|+.+..+....|..+|..|.+.|.+|.
T Consensus 2 RMnQLEdKvEeLl~~~~~L~~EV~RLk 28 (34)
T 2bni_A 2 RMKQIEDKLEEILSKGHHICNELARIK 28 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHccHHHHHHHHHHH
Confidence 556667777777788877777766553
No 166
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=58.71 E-value=26 Score=26.19 Aligned_cols=38 Identities=21% Similarity=0.316 Sum_probs=27.9
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIY 77 (207)
Q Consensus 40 A~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le 77 (207)
=+..|+..|+..+..|...+.++...|..+++.+..+.
T Consensus 92 ~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~~~ 129 (133)
T 1fxk_C 92 SIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEELL 129 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35677888888888888888877777777776666544
No 167
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=58.65 E-value=47 Score=23.75 Aligned_cols=44 Identities=9% Similarity=0.104 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 028596 65 RIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDV 112 (207)
Q Consensus 65 ~i~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDv 112 (207)
....++..+..+|.+|+ .+..+.+....|-..|-+.=-+|.-++
T Consensus 6 e~~~~~~~i~~lE~eL~----~~r~e~~~ql~EYq~LlniKl~Le~EI 49 (74)
T 2xv5_A 6 ERDTSRRLLAEKEREMA----EMRARMQQQLDEYQELLDIKLALDMEI 49 (74)
T ss_dssp HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666666665 555555555556666655544555444
No 168
>3plt_A Sphingolipid long chain base-responsive protein L; eisosomes, LSP1, PIL1, BAR domain, plasma membrane, SELF-ASS phosphoprotein; 2.90A {Saccharomyces cerevisiae}
Probab=58.43 E-value=91 Score=26.95 Aligned_cols=41 Identities=20% Similarity=0.239 Sum_probs=26.9
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (207)
Q Consensus 41 ~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~ 81 (207)
+..||+-|=.|++.+-...+.+-..+..-=+.+-..|.+++
T Consensus 67 IsdklgvLl~e~ge~e~~~a~~~d~yR~~LK~IR~~E~svq 107 (234)
T 3plt_A 67 VTDKLGVLIYELGELQDQFIDKYDQYRVTLKSIRNIEASVQ 107 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 55677777777777777777666665555555555566665
No 169
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=58.24 E-value=62 Score=24.98 Aligned_cols=22 Identities=23% Similarity=0.332 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 028596 50 SEHSALRSQLAEKDSRIAELQS 71 (207)
Q Consensus 50 sE~~~LR~~LaEKd~~i~eLq~ 71 (207)
=+|..||.+|.|.++..+++++
T Consensus 30 YqVdlLKD~LEe~eE~~aql~R 51 (103)
T 4h22_A 30 YQVDTLKDMLLELEEQLAESRR 51 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555543
No 170
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=58.09 E-value=1.2e+02 Score=28.29 Aligned_cols=65 Identities=15% Similarity=0.153 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccc
Q 028596 63 DSRIAELQSQIESIYSSLSDKLGQAQ--------ADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLKD 128 (207)
Q Consensus 63 d~~i~eLq~rvs~Le~~L~~rL~~a~--------ee~~kL~kE~~sLa~TVKkL~RDvaKLE~FKk~LmqSLq~ 128 (207)
...+.+|+.+.+.+..++. +++..- ++...|..|-..|...+|.|...+..++.=-..++.+|-+
T Consensus 83 ~~~~~~l~~~rn~~sk~i~-~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~i~~l~~~~~~~~~~l~~~l~~iPN 155 (501)
T 1wle_A 83 REQIRSLEEEKEAVTEAVR-ALVVNQDNSQVQQDPQYQSLRARGREIRKQLTLLYPKEAQLEEQFYLRALRLPN 155 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHHHHCCTTGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHH-HHhhcCccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 3344455555555555543 222221 3556777788888888888888888887777777777654
No 171
>2cly_A ATP synthase B chain, mitochondrial; mitochondrion, ION transport, CF(0), stator, transport, acetylation, hydrogen ION transport; 2.8A {Bos taurus} SCOP: f.52.1.1 PDB: 2wss_T*
Probab=58.05 E-value=86 Score=26.53 Aligned_cols=50 Identities=20% Similarity=0.170 Sum_probs=30.0
Q ss_pred hHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHH
Q 028596 48 LESEHSALRSQLA-EKDSRIAELQSQIESIYSSLS-----DKLGQAQADKERLSKE 97 (207)
Q Consensus 48 LEsE~~~LR~~La-EKd~~i~eLq~rvs~Le~~L~-----~rL~~a~ee~~kL~kE 97 (207)
|+.++......+. =|+.+|..+++++..-...-. .-|-++-.++.+|+-|
T Consensus 82 ~D~~~~~i~~~ln~~r~~~i~~lk~~Ie~~k~~q~~~~~~~~Lf~~~kEn~al~lE 137 (214)
T 2cly_A 82 ADKLNEQKIAQLEEVKQASIKQIQDAIDMEKSQQALVQKRHYLFDVQRNNIAMALE 137 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666666665 577888888888876433322 4444455555555544
No 172
>2d4y_A HAP1, flagellar HOOK-associated protein 1; multi-domain protein, alpha-helical bundle, complex all- beta folds, structural protein; 2.10A {Salmonella typhimurium}
Probab=57.87 E-value=1e+02 Score=27.64 Aligned_cols=87 Identities=15% Similarity=0.221 Sum_probs=48.3
Q ss_pred HhhCCCCchhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHH
Q 028596 19 LQVLPSDPFEQLDVARKITSIAISTRVSDLESEHSALRSQLA----EKDSRIAELQSQIESIYSSLSDKLGQ--AQADKE 92 (207)
Q Consensus 19 lsvLP~DP~EQLdlArkIts~A~atRVs~LEsE~~~LR~~La----EKd~~i~eLq~rvs~Le~~L~~rL~~--a~ee~~ 92 (207)
|+.=|+|+-..=.|.- ...+++.++..+-..+..+|..+. ..-..|..|=+++..|..++. +... .-..-+
T Consensus 56 la~~P~~~~~R~~vl~--~a~~La~~~n~~~~~L~~~~~~~n~~i~~~V~~iN~l~~qIa~LN~qI~-~~~~~~~g~~~n 132 (463)
T 2d4y_A 56 LVSNAEDPAARQALIG--KAEGLVNQFKTTDQYLRDQDKQVNIAIGSSVAQINNYAKQIANLNDQIS-RMTGVGAGASPN 132 (463)
T ss_dssp HHHTTTCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHC--------C
T ss_pred HHhCCCCHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhccCCCCCch
Confidence 4556777654444443 455777888777777777776554 233444555555555555553 1111 124455
Q ss_pred HHHHHHHHHHHHHHHH
Q 028596 93 RLSKENEALTNTVRKL 108 (207)
Q Consensus 93 kL~kE~~sLa~TVKkL 108 (207)
.|..+|+.|...+-++
T Consensus 133 dLlDqRD~ll~eLS~~ 148 (463)
T 2d4y_A 133 DLLDQRDQLVSELNKI 148 (463)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHhh
Confidence 6777777777666554
No 173
>3iox_A AGI/II, PA; alpha helix, PPII helix, supersandwich fold, surface adhesin WALL, peptidoglycan-anchor, cell adhesion; HET: PMS; 1.80A {Streptococcus mutans} PDB: 3ipk_A* 1jmm_A
Probab=57.85 E-value=1.3e+02 Score=28.68 Aligned_cols=67 Identities=19% Similarity=0.186 Sum_probs=43.8
Q ss_pred hHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 29 QLDVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKE 97 (207)
Q Consensus 29 QLdlArkIts~A~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE 97 (207)
|=+||| +..|-+.-...-|.-+...+.+=++..++.+.+++|-....+.+..+|.+-.++.++-.++
T Consensus 15 q~elar--vqkana~aka~Ye~~~ae~~a~n~~i~aeNeaikkrNa~aka~Ye~~l~kY~~dlakY~~~ 81 (497)
T 3iox_A 15 QTELAR--VQKANADAKAAYEAAVAANNAANAALTAENTAIKKRNADAKADYEAKLAKYQADLAKYQKD 81 (497)
T ss_dssp HHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH--HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556777 5555555566666667777777777777777887777777777765555555555444444
No 174
>3ol1_A Vimentin; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, structural protein; 2.81A {Homo sapiens} PDB: 3uf1_A
Probab=57.77 E-value=59 Score=24.63 Aligned_cols=7 Identities=29% Similarity=0.420 Sum_probs=2.5
Q ss_pred hHHHHHH
Q 028596 48 LESEHSA 54 (207)
Q Consensus 48 LEsE~~~ 54 (207)
|+.|+..
T Consensus 39 l~leldn 45 (119)
T 3ol1_A 39 VEVERDN 45 (119)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3333333
No 175
>1gk4_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, stutter; 2.3A {Homo sapiens} SCOP: h.1.20.1
Probab=57.65 E-value=49 Score=23.61 Aligned_cols=41 Identities=17% Similarity=0.190 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 028596 82 DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTL 122 (207)
Q Consensus 82 ~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDvaKLE~FKk~L 122 (207)
..+.........|..+...+-..+....++-..|=+.|-.|
T Consensus 26 ~~~~~~q~~i~~lE~eL~~~r~e~~~q~~EYq~LlnvK~~L 66 (84)
T 1gk4_A 26 VEAANYQDTIGRLQDEIQNMKEEMARHLREYQDLLNVKMAL 66 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44445555566666666666666666666666666665443
No 176
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=57.46 E-value=1e+02 Score=27.13 Aligned_cols=43 Identities=19% Similarity=0.316 Sum_probs=26.0
Q ss_pred CchhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHH
Q 028596 25 DPFEQLDVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAE 68 (207)
Q Consensus 25 DP~EQLdlArkIts~A~atRVs~LEsE~~~LR~~LaEKd~~i~e 68 (207)
.|.+|+..-++ ..+.+..+-..||..+...|....+.+....+
T Consensus 350 s~~~~~~~~~~-~~~~l~~~~~~le~~~~~~~~~~~~~~~~~~~ 392 (487)
T 3oja_A 350 TVIDQVTLRKQ-AKITLEQKKKALDEQVSNGRRAHAELDGTLQQ 392 (487)
T ss_dssp CCCCHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 45555554332 23367777777888887777777666555433
No 177
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=57.28 E-value=55 Score=24.04 Aligned_cols=60 Identities=12% Similarity=0.237 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 028596 53 SALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLE 116 (207)
Q Consensus 53 ~~LR~~LaEKd~~i~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDvaKLE 116 (207)
++||..+......+..|+.=-..|..--+ ...+...+|..|.+.|...+..|.+-.+-|+
T Consensus 14 rrl~E~~~q~qaEl~sLrrT~~EL~~G~~----KL~~mi~~l~~E~~~l~~ni~~lk~K~~EL~ 73 (78)
T 3iv1_A 14 WRMKEEMDRAQAELNALKRTEEDLKKGHQ----KLEEMVTRLDQEVAEVDKNIELLKKKDEELS 73 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHhhhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666666666666544333333332 3455567788888888888777776655554
No 178
>2v4h_A NF-kappa-B essential modulator; transcription, metal-binding, NEMO - IKK gamma - NFKB pathwa darpin, transcription regulation; 2.9A {Mus musculus}
Probab=57.26 E-value=44 Score=26.10 Aligned_cols=30 Identities=20% Similarity=0.307 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 51 EHSALRSQLAEKDSRIAELQSQIESIYSSL 80 (207)
Q Consensus 51 E~~~LR~~LaEKd~~i~eLq~rvs~Le~~L 80 (207)
|+..|+.+|...++.+..-+..+..|...+
T Consensus 25 ei~~L~~~L~~AEeaL~~Kq~~idelk~ei 54 (110)
T 2v4h_A 25 QLEDLRQQLQQAEEALVAKQELIDKLKEEA 54 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666665555555544444444444433
No 179
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=57.12 E-value=23 Score=22.93 Aligned_cols=13 Identities=23% Similarity=0.501 Sum_probs=5.7
Q ss_pred hhhhhHHHHHHHH
Q 028596 44 RVSDLESEHSALR 56 (207)
Q Consensus 44 RVs~LEsE~~~LR 56 (207)
||++||.-+..|-
T Consensus 2 RMnQLE~KVEeLl 14 (36)
T 1kd8_B 2 KVKQLKAKVEELK 14 (36)
T ss_dssp CHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHH
Confidence 4444444444443
No 180
>1ca9_A TRAF2, protein (TNF receptor associated factor 2); TNF signaling, TRAF, adapter protein, cell surviVal; 2.30A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1qsc_A 1czz_A
Probab=57.07 E-value=16 Score=28.70 Aligned_cols=32 Identities=22% Similarity=0.323 Sum_probs=20.4
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 46 SDLESEHSALRSQLAEKDSRIAELQSQIESIY 77 (207)
Q Consensus 46 s~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le 77 (207)
..|+..+..|...+..++..|.+|++++..++
T Consensus 6 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 (192)
T 1ca9_A 6 EALSSKVQQLERSIGLKDLAMADLEQKVLEME 37 (192)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44555556666677777777777776665443
No 181
>3ghg_B Fibrinogen beta chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_B* 1deq_B 2a45_H*
Probab=57.06 E-value=1e+02 Score=29.11 Aligned_cols=88 Identities=11% Similarity=0.133 Sum_probs=61.0
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHH---------HHHHHHHH
Q 028596 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS------DKLGQAQADKERLSK---------ENEALTNT 104 (207)
Q Consensus 40 A~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~------~rL~~a~ee~~kL~k---------E~~sLa~T 104 (207)
-+..-+..||..+..|-+.-.+-.+.|..|+.-+...+.... .+-+..+|++.+..+ -.+.|.+.
T Consensus 92 ~V~~dl~~Le~~l~~isn~Ts~a~~~v~~ik~s~~~~q~~~~~n~~~~~~s~~mle~~~~~~~~~~~~~~~~~i~~l~~~ 171 (461)
T 3ghg_B 92 PIRNSVDELNNNVEAVSQTSSSSFQYMYLLKDLWQKRQKQVKDNENVVNEYSSELEKHQLYIDETVNSNIPTNLRVLRSI 171 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHTHHHHHHHTHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhccccCCCCcchhHHHHHHHHHHHHHHHHHhhhhccchhHHHHHHHH
Confidence 577788888888888888888888888888877777766655 223344555544444 34567777
Q ss_pred HHHHhhhHHHHHHHHHHHHhhcc
Q 028596 105 VRKLQRDVSKLEVFRKTLVQSLK 127 (207)
Q Consensus 105 VKkL~RDvaKLE~FKk~LmqSLq 127 (207)
+.++++.+.+|+.--.+++..-+
T Consensus 172 ~~~~~~~i~~l~~~~~~~~~~c~ 194 (461)
T 3ghg_B 172 LENLRSKIQKLESDVSAQMEYCR 194 (461)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHHHHhhhhhcc
Confidence 77788888888777776666544
No 182
>4h8s_A DCC-interacting protein 13-beta; BAR domain, pleckstrin homology domain, adaptor protein, RAB signaling protein; 3.50A {Homo sapiens}
Probab=56.70 E-value=35 Score=29.70 Aligned_cols=21 Identities=14% Similarity=0.177 Sum_probs=13.3
Q ss_pred HHHhhhhhHHHHHHHHHHHHH
Q 028596 41 ISTRVSDLESEHSALRSQLAE 61 (207)
Q Consensus 41 ~atRVs~LEsE~~~LR~~LaE 61 (207)
+...|..+|.++..|+..|..
T Consensus 42 FRa~l~~~E~~~~~l~~~l~k 62 (407)
T 4h8s_A 42 TRSLLSVFEEDAGTLTDYTNQ 62 (407)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455666677777777666553
No 183
>1zhc_A Hypothetical protein HP1242; A-helical protein, unknown function; NMR {Helicobacter pylori}
Probab=56.68 E-value=21 Score=25.46 Aligned_cols=61 Identities=7% Similarity=0.140 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 028596 54 ALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSKL 115 (207)
Q Consensus 54 ~LR~~LaEKd~~i~eLq~rvs~Le~~L~---~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDvaKL 115 (207)
.+=.+|...|.++..|.+++..|+.++. .+-.-.. ....|-++|=.|-+.+-.+-+...+-
T Consensus 7 d~I~~Lk~~d~~f~~L~~eH~~LD~~I~~le~~~~~~~-~l~~LKk~KL~LKDeI~~lL~~~~~~ 70 (76)
T 1zhc_A 7 DEISVLKANNPHFDKIFEKHNQLDDDIKTAEQQNASDA-EVSHMKKQKLKLKDEIHSMIIEYREK 70 (76)
T ss_dssp HHHHHSTTTSTTHHHHHHHHHHHHHHHHHHHTTCSCHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhcCCCChH-HHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 3445566678888888888888888887 1111112 67778888777777776665554443
No 184
>3oa7_A Head morphogenesis protein, chaotic nuclear migra protein 67 fusion protein; coiled coils, structural protein, spindle POLE BODY; 2.30A {Bacillus phage PHI29}
Probab=56.53 E-value=25 Score=30.21 Aligned_cols=55 Identities=20% Similarity=0.282 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 028596 61 EKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFR 119 (207)
Q Consensus 61 EKd~~i~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDvaKLE~FK 119 (207)
|+.+..++|+.-+-+.-.+++ ..+--.++|+.|++.|...++||..|-+..=+|+
T Consensus 27 ~~~~~~~~~~a~~~s~~s~~~----dl~~s~~~l~ae~~~L~~~l~kLeGn~se~ITfe 81 (206)
T 3oa7_A 27 ERTEALQQLRVNYGSFVSEYN----DLTKSHNTLSKELDNLRSRFGNLEGNTSERITIK 81 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHCCGGGCCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhHHHHHHHHHHHccCCHHhccCHH
Confidence 555666666666666666665 5555566799999999999999999999866664
No 185
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=56.44 E-value=25 Score=23.72 Aligned_cols=27 Identities=22% Similarity=0.309 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 50 SEHSALRSQLAEKDSRIAELQSQIESI 76 (207)
Q Consensus 50 sE~~~LR~~LaEKd~~i~eLq~rvs~L 76 (207)
+++..||..+++=...+.+|++++..|
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el 45 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKL 45 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555444444444444444333
No 186
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=56.43 E-value=18 Score=24.98 Aligned_cols=34 Identities=32% Similarity=0.463 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 028596 61 EKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDV 112 (207)
Q Consensus 61 EKd~~i~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDv 112 (207)
-|..++.+|+.++.. |..||..|...|..|...|
T Consensus 27 RK~~~~~~Le~~v~~------------------L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 27 RKLQRMKQLEDKVEE------------------LLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp HHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHH
Confidence 455666666655553 4455555665555555444
No 187
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=56.39 E-value=31 Score=25.74 Aligned_cols=64 Identities=16% Similarity=0.152 Sum_probs=33.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 028596 46 SDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKL 115 (207)
Q Consensus 46 s~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDvaKL 115 (207)
++|++++..|+.+...-+..|.+++.++...+ -....++..+|..|-+.+-+.--.|-.-+|-+
T Consensus 4 ~~L~~~i~~L~~q~~~L~~ei~~~~a~L~~~~------~~~~~~~hI~~Lh~YNeiKD~gq~L~g~iA~~ 67 (85)
T 3viq_B 4 SQLESRVHLLEQQKEQLESSLQDALAKLKNRD------AKQTVQKHIDLLHTYNEIRDIALGMIGKVAEH 67 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCSSSC------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC------HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 45555555555555555555555543332211 01334566666666666666655555555443
No 188
>2no2_A HIP-I, huntingtin-interacting protein 1; clathrin light chain binding, HIP1 coiled-coil domain, endocytosis, clathrin SELF-assembly, cell adhesion; 2.80A {Homo sapiens}
Probab=56.21 E-value=63 Score=24.43 Aligned_cols=65 Identities=18% Similarity=0.153 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 028596 53 SALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEV 117 (207)
Q Consensus 53 ~~LR~~LaEKd~~i~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDvaKLE~ 117 (207)
...|+.-.|..+.+.+|+.++..+...-+.++....+...+|.+|-..=...|..|++++..++.
T Consensus 18 ~~~~q~~~e~e~~k~eL~~~~~~~~~~~~~k~~eq~~~le~lk~eL~~~~~el~~lq~~l~~~~~ 82 (107)
T 2no2_A 18 SMARQAQVDLEREKKELEDSLERISDQGQRKTQEQLEVLESLKQELATSQRELQVLQGSLETSAQ 82 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444443222344444444444444433333344444444444333
No 189
>2xnx_M M protein, M1-BC1; cell adhesion, virulence factor, streptococcal toxic shock S; 3.30A {Streptococcus pyogenes}
Probab=56.20 E-value=81 Score=25.69 Aligned_cols=32 Identities=19% Similarity=0.121 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 028596 86 QAQADKERLSKENEALTNTVRKLQRDVSKLEV 117 (207)
Q Consensus 86 ~a~ee~~kL~kE~~sLa~TVKkL~RDvaKLE~ 117 (207)
..++...++..+.+.|..+.+.|+.+.+||+.
T Consensus 77 asr~akk~~ea~la~l~~~~~~LeAE~aKLeE 108 (146)
T 2xnx_M 77 INRNLLGNAKLELDQLSSEKEQLTIEKAKLEE 108 (146)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHhHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 33333444444444555555555555555543
No 190
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=56.14 E-value=17 Score=26.40 Aligned_cols=17 Identities=24% Similarity=0.411 Sum_probs=6.6
Q ss_pred HHHHhhhhhHHHHHHHH
Q 028596 40 AISTRVSDLESEHSALR 56 (207)
Q Consensus 40 A~atRVs~LEsE~~~LR 56 (207)
.+..||..||.|-..||
T Consensus 40 e~~~r~~~L~~eN~~L~ 56 (78)
T 1gu4_A 40 ETQHKVLELTAENERLQ 56 (78)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333434443333333
No 191
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=56.10 E-value=58 Score=24.02 Aligned_cols=20 Identities=20% Similarity=0.459 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHhhhHHHHH
Q 028596 97 ENEALTNTVRKLQRDVSKLE 116 (207)
Q Consensus 97 E~~sLa~TVKkL~RDvaKLE 116 (207)
.|..+.+.|+.-.+|+.+|+
T Consensus 79 ~R~~~~~klr~Yk~dL~~lk 98 (102)
T 2qyw_A 79 FRNPMMSKLRNYRKDLAKLH 98 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666665543
No 192
>3ghg_C Fibrinogen gamma chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 1deq_C
Probab=56.03 E-value=38 Score=31.34 Aligned_cols=76 Identities=14% Similarity=0.069 Sum_probs=37.8
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 028596 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS-------DKLGQAQADKERLSKENEALTNTVRKLQRDV 112 (207)
Q Consensus 40 A~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~-------~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDv 112 (207)
-+...+..||..+..+-..-.+-.+.|..|+.-+..-+.... .+-+..++++.++..-......++..|++.+
T Consensus 35 ~V~~~l~~L~~~l~~isn~Ts~~~~~v~~ik~~~~~~q~~~~~n~~~~~q~Skkml~~~~~~~~~~~~~~~~i~~l~~~~ 114 (411)
T 3ghg_C 35 KVDKDLQSLEDILHQVENKTSEVKQLIKAIQLTYNPDESSKPNMIDAATLKSRKMLEEIMKYEASILTHDSSIRYLQEIY 114 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 455667777777776666666666666666554333221111 2222344455555444444344444444444
Q ss_pred HHH
Q 028596 113 SKL 115 (207)
Q Consensus 113 aKL 115 (207)
...
T Consensus 115 ~~~ 117 (411)
T 3ghg_C 115 NSN 117 (411)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 193
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=55.79 E-value=43 Score=22.44 Aligned_cols=12 Identities=33% Similarity=0.459 Sum_probs=6.0
Q ss_pred hhhhHHHHHHHH
Q 028596 45 VSDLESEHSALR 56 (207)
Q Consensus 45 Vs~LEsE~~~LR 56 (207)
|..||.++..|.
T Consensus 24 ~~~LE~~v~~L~ 35 (55)
T 1dh3_A 24 VKSLENRVAVLE 35 (55)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 445555554444
No 194
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=55.30 E-value=42 Score=28.82 Aligned_cols=36 Identities=25% Similarity=0.326 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Q 028596 86 QAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQS 125 (207)
Q Consensus 86 ~a~ee~~kL~kE~~sLa~TVKkL~RDvaKLE~FKk~LmqS 125 (207)
...++++.|.+||..| |.|.-.+..|...-..||..
T Consensus 126 ~l~eEi~~LkeEn~eL----keLae~~q~la~vi~~l~~~ 161 (209)
T 2wvr_A 126 QKDNEIARLKKENKEL----AEVAEHVQYMAELIERLNGE 161 (209)
T ss_dssp HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhcC
Confidence 3344444444444443 33344444455555555553
No 195
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=55.03 E-value=61 Score=23.92 Aligned_cols=65 Identities=11% Similarity=0.242 Sum_probs=25.4
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028596 43 TRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRD 111 (207)
Q Consensus 43 tRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~~sLa~TVKkL~RD 111 (207)
..+..|+.|-.+|.+.|.+=...-+.|...+..++.+.. ...++-.+.-++.+.+.-++--+..+
T Consensus 11 ~eL~~l~~eE~~L~~eL~~lEke~~~l~~el~~le~E~~----~L~~eE~~~w~eyn~~~~ql~e~~dE 75 (96)
T 3q8t_A 11 RELKELALEEERLIQELEDVEKNRKVVAENLEKVQAEAE----RLDQEEAQYQREYSEFKRQQLELDDE 75 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH----HHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444443333333333333333333332 33333344444444444444433333
No 196
>3c9i_A Tail needle protein GP26; xenon, coiled-coil, protein fiber, coiled coil, late protein, viral protein; 1.95A {Bacteriophage P22} PDB: 2poh_A
Probab=54.89 E-value=1.1e+02 Score=26.71 Aligned_cols=19 Identities=21% Similarity=0.342 Sum_probs=12.9
Q ss_pred HhhCCCCchhhHHHHHHHH
Q 028596 19 LQVLPSDPFEQLDVARKIT 37 (207)
Q Consensus 19 lsvLP~DP~EQLdlArkIt 37 (207)
-++||.+-|-|==+-.-|.
T Consensus 28 ~sILPrNiFS~sYllyVi~ 46 (242)
T 3c9i_A 28 ASILPRNVFSKSYLLYVIA 46 (242)
T ss_dssp SSSSCTTTSCHHHHHHHHH
T ss_pred ccccccchhhhHHHHHHhc
Confidence 4689999888755544443
No 197
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=54.64 E-value=52 Score=23.03 Aligned_cols=42 Identities=14% Similarity=0.361 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcc
Q 028596 86 QAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLK 127 (207)
Q Consensus 86 ~a~ee~~kL~kE~~sLa~TVKkL~RDvaKLE~FKk~LmqSLq 127 (207)
...++.+.|.+|+..|..++-.=+|-=-+||.+-|.++++.+
T Consensus 14 aLkDqV~eL~qe~k~m~k~lEeEqkARk~LE~~vrk~~k~~~ 55 (56)
T 2w6b_A 14 ALKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKVLKNMN 55 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 344555566666666666666666666666766666666543
No 198
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=53.68 E-value=17 Score=29.15 Aligned_cols=85 Identities=14% Similarity=0.240 Sum_probs=53.9
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 028596 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS----DKLGQAQADKERLSKENEALTNTVRKLQRDVSKL 115 (207)
Q Consensus 40 A~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~----~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDvaKL 115 (207)
++.+.++..+.|+.+|+..|.+=...-.+.+.+...++.+|- +-..+|+.+...-..++..+...+.+|.+.+.-
T Consensus 36 ~l~~~l~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElE~LTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e- 114 (135)
T 2e7s_A 36 TLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNLVADARMEKYAIEILNKRLTEQLRE- 114 (135)
T ss_dssp HHHHHTTTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTTH-
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 455666667778888888887666666666777777777776 555666666666667777777777777666654
Q ss_pred HHHHHHHHhhccc
Q 028596 116 EVFRKTLVQSLKD 128 (207)
Q Consensus 116 E~FKk~LmqSLq~ 128 (207)
|..++.++|+
T Consensus 115 ---~e~ll~~lq~ 124 (135)
T 2e7s_A 115 ---KDMLLDTLTL 124 (135)
T ss_dssp ---HHHCC-----
T ss_pred ---HHHHHHHHHH
Confidence 2344444443
No 199
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=53.62 E-value=21 Score=26.98 Aligned_cols=32 Identities=16% Similarity=0.211 Sum_probs=20.3
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQ 72 (207)
Q Consensus 41 ~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~r 72 (207)
+..|+..|..|+..|.++=.+=|++|..++..
T Consensus 4 ~~~~~~~Lk~El~~L~~~E~~LD~~i~~~~~~ 35 (106)
T 2aze_B 4 MGGRLEGLTQDLRQLQESEQQLDHLMNICTTQ 35 (106)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677777777777777666666666666544
No 200
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=53.48 E-value=37 Score=23.09 Aligned_cols=29 Identities=21% Similarity=0.499 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 028596 89 ADKERLSKENEALTNTVRKLQRDVSKLEV 117 (207)
Q Consensus 89 ee~~kL~kE~~sLa~TVKkL~RDvaKLE~ 117 (207)
.++-+|.....+|...+-.|.-++++||+
T Consensus 17 kdnlqlerdeqnlekiianlrdeiarlen 45 (52)
T 3he5_B 17 KDNLQLERDEQNLEKIIANLRDEIARLEN 45 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhhhHhhHHHHHHHHHHHHHHHHH
Confidence 34444555555566666666666666664
No 201
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=53.48 E-value=50 Score=26.85 Aligned_cols=26 Identities=23% Similarity=0.363 Sum_probs=13.1
Q ss_pred HHHHHHHHHHhhhHH-HHHHHHHHHHh
Q 028596 99 EALTNTVRKLQRDVS-KLEVFRKTLVQ 124 (207)
Q Consensus 99 ~sLa~TVKkL~RDva-KLE~FKk~Lmq 124 (207)
..|.--+..|...|. ++|.||+.|.-
T Consensus 135 ~~L~Py~eelr~kl~~~~eeLr~~l~P 161 (191)
T 1nfn_A 135 VRLASHLRKLRKRLLRDADDLQKRLAV 161 (191)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHhHH
Confidence 334444444433333 56777777643
No 202
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=52.55 E-value=8.3 Score=36.36 Aligned_cols=40 Identities=18% Similarity=0.324 Sum_probs=19.1
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSS 79 (207)
Q Consensus 40 A~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~ 79 (207)
.+..|+-.+|.|....+..|.+-.+.+..|+++...++.+
T Consensus 339 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~e~~~~~~~e 378 (575)
T 2i1j_A 339 EYQDRLRQMQEEMERSQANLLEAQDMILRLEEQLRQLQAA 378 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 4566777777777777777777777666666655544443
No 203
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=51.98 E-value=23 Score=22.86 Aligned_cols=28 Identities=32% Similarity=0.372 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028596 83 KLGQAQADKERLSKENEALTNTVRKLQR 110 (207)
Q Consensus 83 rL~~a~ee~~kL~kE~~sLa~TVKkL~R 110 (207)
|+.+..+..++|..+|..|.+.|.+|..
T Consensus 2 RMnQLE~KVEeLl~~~~~Le~eV~RLk~ 29 (36)
T 1kd8_B 2 KVKQLKAKVEELKSKLWHLKNKVARLKK 29 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 4556667777888888888887776654
No 204
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=51.85 E-value=40 Score=22.83 Aligned_cols=40 Identities=23% Similarity=0.274 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028596 68 ELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRD 111 (207)
Q Consensus 68 eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~~sLa~TVKkL~RD 111 (207)
+++.+++.+|.+|+ .+..+.+....|-..|-+.=-+|.-+
T Consensus 4 ~~q~~i~~le~el~----~~r~e~~~q~~eYq~LlniK~~Le~E 43 (59)
T 1gk6_A 4 QLEDKVEELLSKNY----HLENEVARLKKLVGDLLNVKMALDIE 43 (59)
T ss_dssp HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 34445555555554 44444444444444444443344333
No 205
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=51.65 E-value=96 Score=25.18 Aligned_cols=20 Identities=30% Similarity=0.456 Sum_probs=12.0
Q ss_pred HHhhhhhHHHHHHHHHHHHH
Q 028596 42 STRVSDLESEHSALRSQLAE 61 (207)
Q Consensus 42 atRVs~LEsE~~~LR~~LaE 61 (207)
..+.+..+.|+.+|+..|.+
T Consensus 50 ~~~~~~~~~e~~~L~~~l~~ 69 (154)
T 2ocy_A 50 KRELSDRDDEVKRLREDIAK 69 (154)
T ss_dssp HTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHHHHHHHH
Confidence 34455666666666666653
No 206
>3bbp_D GRIP and coiled-coil domain-containing protein 2; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens}
Probab=51.62 E-value=11 Score=27.55 Aligned_cols=31 Identities=23% Similarity=0.378 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 028596 82 DKLGQAQADKERLSKENEALTNTVRKLQRDV 112 (207)
Q Consensus 82 ~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDv 112 (207)
+-|..+...+.+|...++-|-.-|++|.|+-
T Consensus 36 ~LL~EsEatnarL~eq~~lLK~EIRRlERnq 66 (71)
T 3bbp_D 36 GLLRETEATNAILMEQIKLLKSEIRRLERNQ 66 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHhccchHHHHHHHHHHHHHHHHHHHhhH
Confidence 5667888888889999999988888888864
No 207
>2fcw_A Alpha-2-macroglobulin receptor-associated protein; protein-protein complex, RAP, escort protein, calcium- binding; 1.26A {Homo sapiens} SCOP: a.13.1.1 PDB: 2ftu_A
Probab=51.49 E-value=84 Score=24.46 Aligned_cols=72 Identities=21% Similarity=0.307 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH-----HHHHHHHHHHHHHHHHHHHHHhhhHHH-HHHHH
Q 028596 49 ESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQA-----QADKERLSKENEALTNTVRKLQRDVSK-LEVFR 119 (207)
Q Consensus 49 EsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~---~rL~~a-----~ee~~kL~kE~~sLa~TVKkL~RDvaK-LE~FK 119 (207)
+.|...||..|.==+..|.-+ .-++.++. .+++.. .++..+....+..|.+.+|++.+-|.| +..+.
T Consensus 23 ~~ELeSlK~EL~HfE~rl~K~----rH~~~el~l~~~k~~~~~~~g~~e~~s~~~ek~~~le~k~Kk~~~kV~Kl~~dl~ 98 (109)
T 2fcw_A 23 DKELEAFREELKHFEAKIEKH----NHYQKQLEIAHEKLRHAESVGDGERVSRSREKHALLEGRTKELGYTVKKHLQDLS 98 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhhhhcccchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677888876333333222 22233332 222111 122334456678888888888888888 45666
Q ss_pred HHHHh
Q 028596 120 KTLVQ 124 (207)
Q Consensus 120 k~Lmq 124 (207)
..+|+
T Consensus 99 ~rI~~ 103 (109)
T 2fcw_A 99 GRISR 103 (109)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 66665
No 208
>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain, BAR-PH domain, protein transpo; 2.05A {Homo sapiens} PDB: 2z0o_A 2elb_A
Probab=51.12 E-value=77 Score=27.29 Aligned_cols=21 Identities=10% Similarity=0.246 Sum_probs=14.8
Q ss_pred HHHhhhhhHHHHHHHHHHHHH
Q 028596 41 ISTRVSDLESEHSALRSQLAE 61 (207)
Q Consensus 41 ~atRVs~LEsE~~~LR~~LaE 61 (207)
+...|..+|.++..|+..|..
T Consensus 19 FR~~l~~~E~~~~~l~~~l~k 39 (385)
T 2q13_A 19 TRSLLGVFEEDATAISNYMNQ 39 (385)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777777664
No 209
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=50.99 E-value=21 Score=22.65 Aligned_cols=12 Identities=33% Similarity=0.567 Sum_probs=4.5
Q ss_pred hhhhhHHHHHHH
Q 028596 44 RVSDLESEHSAL 55 (207)
Q Consensus 44 RVs~LEsE~~~L 55 (207)
||++||..+..|
T Consensus 1 RM~QLE~kVEeL 12 (33)
T 3m48_A 1 RMAQLEAKVEEL 12 (33)
T ss_dssp --CHHHHHHHHH
T ss_pred CccHHHHHHHHH
Confidence 344444444444
No 210
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=50.46 E-value=70 Score=23.89 Aligned_cols=23 Identities=22% Similarity=0.137 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHH
Q 028596 94 LSKENEALTNTVRKLQRDVSKLE 116 (207)
Q Consensus 94 L~kE~~sLa~TVKkL~RDvaKLE 116 (207)
.....+.|...+.|+..-++.||
T Consensus 67 ~~~kid~L~~el~K~q~~L~e~e 89 (98)
T 2ke4_A 67 TLSNIERLKLEVQKYEAWLAEAE 89 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344444444444444444443
No 211
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=50.23 E-value=42 Score=24.75 Aligned_cols=54 Identities=22% Similarity=0.382 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhHHHHHH
Q 028596 60 AEKDSRIAELQSQIESIYSSLSDKLGQAQADKERL-SKENEALTNTVRKLQRDVSKLEV 117 (207)
Q Consensus 60 aEKd~~i~eLq~rvs~Le~~L~~rL~~a~ee~~kL-~kE~~sLa~TVKkL~RDvaKLE~ 117 (207)
.+|...|.+++..+..++.-|. +-.-|...+ ...|..+.+.|+.-.+|+.+|+.
T Consensus 34 eerk~~i~~ie~~l~EA~ell~----qMelE~r~~p~~~R~~~~~klr~Yk~dL~~lk~ 88 (102)
T 1vcs_A 34 DEKKQMVANVEKQLEEARELLE----QMDLEVREIPPQSRGMYSNRMRSYKQEMGKLET 88 (102)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHH----HHHHHHTTSCTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHhCCHHhHHHHHHHHHHHHHHHHHHHH
Confidence 3555556666555555444443 211111111 24577888888888888887655
No 212
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=50.14 E-value=1.6e+02 Score=27.44 Aligned_cols=40 Identities=25% Similarity=0.403 Sum_probs=26.4
Q ss_pred HHHHHH----HHH-HHHHHHHHHHHhhhHHHHHHHHHHHHhhccc
Q 028596 89 ADKERL----SKE-NEALTNTVRKLQRDVSKLEVFRKTLVQSLKD 128 (207)
Q Consensus 89 ee~~kL----~kE-~~sLa~TVKkL~RDvaKLE~FKk~LmqSLq~ 128 (207)
++...| .+| -..|...++.|...+..+|.=...++.+|-+
T Consensus 99 ~~~~~l~~~~~~~~~~~l~~~i~~le~~~~~~~~~~~~~l~~iPN 143 (484)
T 3lss_A 99 EQVEQLCVLQLKQLSKDLSDQVAGLAKEAQQLEEERDKLMLNVGN 143 (484)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred hhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 344556 556 7788888888888888888877778877743
No 213
>3d5a_X RF1, peptide chain release factor 1; ribosome, ribonucleoprotein, ribosomal protein, RNA-binding, binding, metal-binding, zinc-finger; 3.21A {Thermus thermophilus} PDB: 2b64_Y 3d5c_X 3mr8_V 3ms0_V
Probab=49.92 E-value=1.2e+02 Score=27.52 Aligned_cols=82 Identities=18% Similarity=0.254 Sum_probs=44.2
Q ss_pred hhhhhHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH-----H-HHHHHHHHHHHhh
Q 028596 44 RVSDLESEHSALRSQLAEK-----DSRIAELQSQIESIYSSLS--DKLGQAQADKERLSK-----E-NEALTNTVRKLQR 110 (207)
Q Consensus 44 RVs~LEsE~~~LR~~LaEK-----d~~i~eLq~rvs~Le~~L~--~rL~~a~ee~~kL~k-----E-~~sLa~TVKkL~R 110 (207)
|+..++.+...|-.++++- ......+-++++.|+.-+. ..+....++...|.+ | +.....-++.|..
T Consensus 4 ~l~~~~~r~~el~~~~~~p~~~~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~~~~~~~el~~D~e~~~~a~~e~~~l~~ 83 (354)
T 3d5a_X 4 KLDRLEEEYRELEALLSDPEVLKDKGRYQSLSRRYAEMGEVIGLIREYRKVLEDLEQAESLLDDPELKEMAKAEREALLA 83 (354)
T ss_dssp HHHHHTHHHHHHHHHTTSTTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCchhhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 4555666666666655532 2344455555555555544 444444444433322 1 2334556778888
Q ss_pred hHHHHHH-HHHHHHhh
Q 028596 111 DVSKLEV-FRKTLVQS 125 (207)
Q Consensus 111 DvaKLE~-FKk~LmqS 125 (207)
.+.+||. ++.-|+-+
T Consensus 84 ~~~~le~~l~~lLlp~ 99 (354)
T 3d5a_X 84 RKEALEKELERHLLPK 99 (354)
T ss_dssp HHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHhcCCC
Confidence 8888885 66555543
No 214
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=49.70 E-value=51 Score=24.67 Aligned_cols=36 Identities=17% Similarity=0.311 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 64 SRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTN 103 (207)
Q Consensus 64 ~~i~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~~sLa~ 103 (207)
..+.+|+.....|..++. ...+++..+.+|.+.+-.
T Consensus 48 ~q~~~LE~e~~~L~~e~~----~L~~e~~~~~~e~d~~k~ 83 (90)
T 2wt7_B 48 QQKHHLENEKTQLIQQVE----QLKQEVSRLARERDAYKV 83 (90)
T ss_dssp HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Confidence 334444444444444443 444444445555544443
No 215
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=49.62 E-value=59 Score=22.18 Aligned_cols=36 Identities=17% Similarity=0.195 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 62 KDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEAL 101 (207)
Q Consensus 62 Kd~~i~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~~sL 101 (207)
|-..+.+|+.++..|+..-. ....+...|..|+..|
T Consensus 21 Kk~~~~~le~~~~~L~~~N~----~L~~~i~~L~~E~~~L 56 (63)
T 1ci6_A 21 KRAEQEALTGECKELEKKNE----ALKERADSLAKEIQYL 56 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence 33444455544444444333 3333444444444443
No 216
>3mud_A DNA repair protein XRCC4, tropomyosin alpha-1 CHA; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: DNA; 2.20A {Homo sapiens} PDB: 3sr2_A*
Probab=49.37 E-value=76 Score=26.39 Aligned_cols=41 Identities=10% Similarity=0.174 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 53 SALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKE 97 (207)
Q Consensus 53 ~~LR~~LaEKd~~i~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE 97 (207)
.-.|+-+....+.+..||..+..||..|- ...+++..+.+|
T Consensus 124 E~ireli~~AertV~kLqkeiD~LEDeL~----~eKek~k~i~~e 164 (175)
T 3mud_A 124 EVIRELICYCLDTTAKNEKSIDDLEEKVA----HAKEENLNMHQM 164 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Confidence 34444455555555555555555554443 444444444444
No 217
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=49.33 E-value=62 Score=30.77 Aligned_cols=22 Identities=32% Similarity=0.312 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 028596 59 LAEKDSRIAELQSQIESIYSSL 80 (207)
Q Consensus 59 LaEKd~~i~eLq~rvs~Le~~L 80 (207)
|.+|+..|++=+.|...+|.+-
T Consensus 482 l~~~~k~~~~~~~~~e~~~~~~ 503 (592)
T 1f5n_A 482 LTEKEKEIEVERVKAESAQASA 503 (592)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555554444
No 218
>1ztm_A Fusion glycoprotein; fusion protein, 6-helix bundle,trimer, post-fusion, viral PR; HET: NAG; 3.05A {Human parainfluenza virus 3}
Probab=48.84 E-value=55 Score=31.11 Aligned_cols=77 Identities=18% Similarity=0.320 Sum_probs=45.2
Q ss_pred HHHH--HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 30 LDVA--RKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRK 107 (207)
Q Consensus 30 LdlA--rkIts~A~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~~sLa~TVKk 107 (207)
|.|| -.||+-+--.+..+.+++|.+||+.+..=.+.+.+|+.-++.+-.+++ +.|+. =|+.+.-++.+
T Consensus 102 LGVataaqiTAavAl~qa~~na~~I~~lk~si~~tn~Av~~l~~g~~~l~~av~-----~lQd~-----IN~~i~PaIn~ 171 (490)
T 1ztm_A 102 LGVATSAQITAAVALVEAKQARSDIEKLKEAIRDTNKAVQSVQSSIGNLIVAIK-----SVQDY-----VNKEIVPSIAR 171 (490)
T ss_dssp -----------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHH-----HHHTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHH-----HHHHhhhhhhh
Confidence 5666 778887777788999999999999999999999999999998888886 22222 25678888888
Q ss_pred HhhhHHHHH
Q 028596 108 LQRDVSKLE 116 (207)
Q Consensus 108 L~RDvaKLE 116 (207)
|.++++-++
T Consensus 172 l~C~v~~~~ 180 (490)
T 1ztm_A 172 LGCEAAGLQ 180 (490)
T ss_dssp HHHHHHHHH
T ss_pred cccHhHHHH
Confidence 888887654
No 219
>4fla_A Regulation of nuclear PRE-mRNA domain-containing 1B; structural genomics consortium, SGC, transcription; 2.20A {Homo sapiens}
Probab=48.54 E-value=1e+02 Score=24.58 Aligned_cols=19 Identities=16% Similarity=0.237 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 028596 52 HSALRSQLAEKDSRIAELQ 70 (207)
Q Consensus 52 ~~~LR~~LaEKd~~i~eLq 70 (207)
+++|...+.++...+..|+
T Consensus 88 n~rL~~E~~dR~~L~~~L~ 106 (152)
T 4fla_A 88 NGRLAAELEDRRQLARMLV 106 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444333
No 220
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=48.44 E-value=9.2 Score=25.24 Aligned_cols=22 Identities=23% Similarity=0.391 Sum_probs=15.1
Q ss_pred HHHHhhhhhHHHHHHHHHHHHH
Q 028596 40 AISTRVSDLESEHSALRSQLAE 61 (207)
Q Consensus 40 A~atRVs~LEsE~~~LR~~LaE 61 (207)
.+..|+..||..+..|+..|+|
T Consensus 48 ~L~~ri~~Le~~l~~l~~~l~~ 69 (70)
T 1zme_C 48 QLQKDLNDKTEENNRLKALLLE 69 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 4667777777777777766654
No 221
>1gk6_A Vimentin; intermediate filament, dimer, parallel coiled coil, heptad repeat, leucine zipper, fusion protein; 1.9A {Saccharomyces cerevisiae} SCOP: h.1.20.1
Probab=48.02 E-value=61 Score=21.88 Aligned_cols=41 Identities=15% Similarity=0.249 Sum_probs=27.1
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (207)
Q Consensus 41 ~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~ 81 (207)
+-.+++.||+++..+|+.++.--+...+|=.=-..||.++.
T Consensus 5 ~q~~i~~le~el~~~r~e~~~q~~eYq~LlniK~~Le~EIa 45 (59)
T 1gk6_A 5 LEDKVEELLSKNYHLENEVARLKKLVGDLLNVKMALDIEIA 45 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 44677888999988888877665555555444444555544
No 222
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=47.81 E-value=23 Score=27.29 Aligned_cols=39 Identities=18% Similarity=0.343 Sum_probs=29.7
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYS 78 (207)
Q Consensus 40 A~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~ 78 (207)
-+..|+..|+..+..|...+.++.+.|..++..+..+..
T Consensus 102 ~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l~~ 140 (151)
T 2zdi_C 102 FLEKRLKEYDEAIKKTQGALAELEKRIGEVARKAQEVQQ 140 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466788888888888888888888888777766665544
No 223
>1bg1_A Protein (transcription factor STAT3B); protein-DNA complex, cytokine activation, complex (transcription factor/DNA), transcription/DNA complex; HET: DNA PTR; 2.25A {Mus musculus} SCOP: a.47.1.1 b.2.5.5 d.93.1.1 PDB: 3cwg_A
Probab=47.78 E-value=77 Score=30.74 Aligned_cols=40 Identities=8% Similarity=0.215 Sum_probs=22.0
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSL 80 (207)
Q Consensus 41 ~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L 80 (207)
+..|-..+|+.+..||..+.+.++.|..|++.-..++..+
T Consensus 11 ~~~k~~ei~~~v~~lr~~~q~~e~~ik~Le~~Qe~f~~~y 50 (596)
T 1bg1_A 11 VTEKQQMLEQHLQDVRKRVQDLEQKMKVVENLQDDFDFNY 50 (596)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 3445555566666666666666665555555544444333
No 224
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=47.75 E-value=94 Score=23.96 Aligned_cols=55 Identities=22% Similarity=0.245 Sum_probs=30.5
Q ss_pred HHHH-HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 028596 57 SQLA-EKDSRIAE---LQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKL 115 (207)
Q Consensus 57 ~~La-EKd~~i~e---Lq~rvs~Le~~L~~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDvaKL 115 (207)
.||. ||...+++ |.+++..+|..+. +...++....+|...+--+...|+++++.|
T Consensus 19 AQLDNEKsal~YqVdlLKD~LEe~eE~~a----ql~Re~~eK~re~e~~Kr~~~~L~~~~~~l 77 (103)
T 4h22_A 19 AQLDNEKTNFMYQVDTLKDMLLELEEQLA----ESRRQYEEKNKEFEREKHAHSILQFQFAEV 77 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3554 67666544 4555665555554 444444555555555555556666665553
No 225
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=46.76 E-value=1.1e+02 Score=25.99 Aligned_cols=20 Identities=20% Similarity=0.318 Sum_probs=8.4
Q ss_pred HHHHHHHHHHhhhHHHHHHH
Q 028596 99 EALTNTVRKLQRDVSKLEVF 118 (207)
Q Consensus 99 ~sLa~TVKkL~RDvaKLE~F 118 (207)
..|..--..+....++.+++
T Consensus 258 ~~l~~~~~~l~~~~~~~~~~ 277 (357)
T 3rrk_A 258 EALIALWTRAKDEVARYKAV 277 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33433334444444444443
No 226
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=46.19 E-value=43 Score=21.61 Aligned_cols=12 Identities=33% Similarity=0.504 Sum_probs=5.9
Q ss_pred hhhhhHHHHHHH
Q 028596 44 RVSDLESEHSAL 55 (207)
Q Consensus 44 RVs~LEsE~~~L 55 (207)
||++||..+..|
T Consensus 2 RMnQLE~kVEeL 13 (36)
T 1kd8_A 2 EVKQLEAEVEEI 13 (36)
T ss_dssp CCHHHHHHHHHH
T ss_pred chhHHHHHHHHH
Confidence 455555544443
No 227
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=46.04 E-value=35 Score=30.99 Aligned_cols=35 Identities=20% Similarity=0.393 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 028596 83 KLGQAQADKERLSKENEALTNTVRKLQRDVSKLEV 117 (207)
Q Consensus 83 rL~~a~ee~~kL~kE~~sLa~TVKkL~RDvaKLE~ 117 (207)
|++....+..-|.-|++-|.+..+.|++++.+++.
T Consensus 50 ~lk~le~~~~~L~~e~e~l~~~~~~~~~e~~~~~e 84 (428)
T 4b4t_K 50 KLKKLEKEYELLTLQEDYIKDEQRHLKRELKRAQE 84 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444445555556666666777777666554
No 228
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=45.90 E-value=70 Score=21.92 Aligned_cols=9 Identities=22% Similarity=0.383 Sum_probs=3.5
Q ss_pred HHHHHHhhh
Q 028596 103 NTVRKLQRD 111 (207)
Q Consensus 103 ~TVKkL~RD 111 (207)
.+|..|..+
T Consensus 63 r~iq~L~~e 71 (77)
T 3trt_A 63 RQVQSLTME 71 (77)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 333344433
No 229
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=45.44 E-value=37 Score=22.87 Aligned_cols=27 Identities=19% Similarity=0.210 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 028596 89 ADKERLSKENEALTNTVRKLQRDVSKL 115 (207)
Q Consensus 89 ee~~kL~kE~~sLa~TVKkL~RDvaKL 115 (207)
.+..+|..|++.|...+..|...++.|
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el 45 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKL 45 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666666666555554444
No 230
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=45.02 E-value=89 Score=22.87 Aligned_cols=40 Identities=23% Similarity=0.381 Sum_probs=20.7
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 42 STRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (207)
Q Consensus 42 atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~ 81 (207)
..|+..+|.+-..|+.++..=...+.+=+.+-..+..+|.
T Consensus 12 ~~klq~~E~rN~~Le~~v~~le~~Le~s~~~q~~~~~Elk 51 (79)
T 3cvf_A 12 QQKVQDLETRNAELEHQLRAMERSLEEARAERERARAEVG 51 (79)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555544445444444444444444
No 231
>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}
Probab=44.98 E-value=82 Score=22.47 Aligned_cols=45 Identities=24% Similarity=0.357 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 54 ALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALT 102 (207)
Q Consensus 54 ~LR~~LaEKd~~i~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~~sLa 102 (207)
.++..|+--++.|..|=+=-+.|-.+| +....+..+|+.||.+|.
T Consensus 17 evK~ALaaSeAkiQQLmkVN~~ls~El----r~mQ~~lq~LQsen~~Lr 61 (63)
T 2w6a_A 17 ELKKALATSEAKVQQLMKVNSSLSDEL----RKLQREIHKLQAENLQLR 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHhHhhhHHH----HHHHHHHHHHHhhhhhhc
Confidence 345555555555655543333333333 355566667777777664
No 232
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=44.97 E-value=32 Score=24.60 Aligned_cols=33 Identities=30% Similarity=0.442 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 49 ESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (207)
Q Consensus 49 EsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~ 81 (207)
+.-|+.|...|.+||+.|++|+.++-.+..-+.
T Consensus 24 de~I~eLE~~L~~kd~eI~eLr~~LdK~qsVl~ 56 (67)
T 1zxa_A 24 EERIKELEKRLSEKEEEIQELKRKLHKCQSVLP 56 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 445677777788888888888877766655553
No 233
>2q12_A DIP13 alpha, DCC-interacting protein 13 alpha; APPL1, BAR domain, protein transport; 1.79A {Homo sapiens} PDB: 2z0n_A
Probab=44.87 E-value=1.3e+02 Score=24.57 Aligned_cols=86 Identities=10% Similarity=0.226 Sum_probs=45.8
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhhHHHHH
Q 028596 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKER----LSKENEALTNTVRKLQRDVSKLE 116 (207)
Q Consensus 41 ~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~~rL~~a~ee~~k----L~kE~~sLa~TVKkL~RDvaKLE 116 (207)
+...|..+|.++..|+..|..=-.....+-+-...+..+. ..+..+..+-.. +...-..+...+++...-+..+.
T Consensus 19 FR~~l~~~E~~~~~l~~~l~kl~k~~~~~~~a~~~~~~a~-~~f~~~L~~~~~~~~~~~~~d~~~~~~L~~f~~~l~ei~ 97 (265)
T 2q12_A 19 TRSLLGVFEEDATAISNYMNQLYQAMHRIYDAQNELSAAT-HLTSKLLKEYEKQRFPLGGDDEVMSSTLQQFSKVIDELS 97 (265)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHGGGGSCCC-----CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhccCCCCcHHHHHHHHHHHHHHHHHH
Confidence 5567888888888888877654443333332222222111 222233333111 11112334567777777777888
Q ss_pred HHHHHHHhhcc
Q 028596 117 VFRKTLVQSLK 127 (207)
Q Consensus 117 ~FKk~LmqSLq 127 (207)
+++..|++.++
T Consensus 98 ~~~~~l~~~~~ 108 (265)
T 2q12_A 98 SCHAVLSTQLA 108 (265)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88888777654
No 234
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=44.65 E-value=1.2e+02 Score=24.19 Aligned_cols=29 Identities=14% Similarity=0.110 Sum_probs=13.8
Q ss_pred hhHHHHHHHHHHHHHHhhhhhHHHHHHHH
Q 028596 28 EQLDVARKITSIAISTRVSDLESEHSALR 56 (207)
Q Consensus 28 EQLdlArkIts~A~atRVs~LEsE~~~LR 56 (207)
+.+.-.++=.+..+..+....|.=|..|=
T Consensus 53 ~~f~~~~~ela~dli~kakqIe~LIdsLP 81 (151)
T 1yke_B 53 EEFSNTIDELSTDIILKTRQINKLIDSLP 81 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 44444443344445555555555544443
No 235
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=44.61 E-value=71 Score=24.25 Aligned_cols=28 Identities=21% Similarity=0.255 Sum_probs=20.3
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHH
Q 028596 39 IAISTRVSDLESEHSALRSQLAEKDSRI 66 (207)
Q Consensus 39 ~A~atRVs~LEsE~~~LR~~LaEKd~~i 66 (207)
.|+-.|..+.|.|+..||.++.|....+
T Consensus 7 ~~~~~~~~~~e~e~~~l~~~~~el~~~l 34 (125)
T 1joc_A 7 RALLERCLKGEGEIEKLQTKVLELQRKL 34 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3667778888888888888777655444
No 236
>3okg_A Restriction endonuclease S subunits; coiled-coil, type I methyltransferase, DNA binding, DNA BIND protein; 1.95A {Thermoanaerobacter tengcongensis}
Probab=44.60 E-value=42 Score=27.93 Aligned_cols=16 Identities=6% Similarity=0.262 Sum_probs=11.4
Q ss_pred hHHHHHHHHHHHHhhc
Q 028596 111 DVSKLEVFRKTLVQSL 126 (207)
Q Consensus 111 DvaKLE~FKk~LmqSL 126 (207)
...+|+.+|+.||+.+
T Consensus 392 ~~~~L~~lk~~LL~k~ 407 (412)
T 3okg_A 392 TEAELKRLEQAILDKA 407 (412)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5677777777777753
No 237
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=44.52 E-value=35 Score=21.66 Aligned_cols=12 Identities=25% Similarity=0.324 Sum_probs=5.7
Q ss_pred hhhhhHHHHHHH
Q 028596 44 RVSDLESEHSAL 55 (207)
Q Consensus 44 RVs~LEsE~~~L 55 (207)
||++||..+..|
T Consensus 1 RMnQLEdKVEel 12 (33)
T 2wq1_A 1 RMKQLEDKIEEN 12 (33)
T ss_dssp CHHHHHHHHHHH
T ss_pred CchHHHHHHHHH
Confidence 445555444444
No 238
>3qh9_A Liprin-beta-2; coiled-coil, dimerization, structural protein; 2.01A {Homo sapiens}
Probab=44.10 E-value=96 Score=23.04 Aligned_cols=45 Identities=16% Similarity=0.263 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028596 65 RIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQ 109 (207)
Q Consensus 65 ~i~eLq~rvs~Le~~L~---~rL~~a~ee~~kL~kE~~sLa~TVKkL~ 109 (207)
.|.+|+-||+.+|.+=. -+|+..-++...|++.-..=-.-++.|.
T Consensus 27 Ei~~Lr~kv~elEnErlQyEkKLKsTK~El~~Lq~qLe~kd~ei~rL~ 74 (81)
T 3qh9_A 27 ELRHLKIKVEELENERNQYEWKLKATKAEVAQLQEQVALKDAEIERLH 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhHHHHHHHH
Confidence 34445555555554432 5555555555555554433333444443
No 239
>4dac_A Computationally designed crystal forming protein; alpha-helix, three-helix bundle, coiled-coil protein, DE NOV computational protein design; 2.10A {Synthetic}
Probab=44.09 E-value=17 Score=22.09 Aligned_cols=18 Identities=39% Similarity=0.649 Sum_probs=13.9
Q ss_pred HHHHHHHHHhhhHHHHHH
Q 028596 100 ALTNTVRKLQRDVSKLEV 117 (207)
Q Consensus 100 sLa~TVKkL~RDvaKLE~ 117 (207)
.|-..||+|.++|-|||.
T Consensus 5 kldanvkrlekevgkleg 22 (28)
T 4dac_A 5 KLDANVKRLEKEVGKLEG 22 (28)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred eccccHHHHHHHHhhhhh
Confidence 466778888888888874
No 240
>2vrs_A Sigma-C capsid protein; alpha-helical coiled coil, receptor-binding, triple beta-spiral, viral protein, virion, coiled coil, beta-barrel; 1.75A {Avian reovirus} PDB: 2jjl_A 2bsf_A 2bt7_A 2bt8_A
Probab=43.97 E-value=29 Score=29.83 Aligned_cols=29 Identities=21% Similarity=0.201 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 028596 89 ADKERLSKENEALTNTVRKLQRDVSKLEV 117 (207)
Q Consensus 89 ee~~kL~kE~~sLa~TVKkL~RDvaKLE~ 117 (207)
-+..+|...-..++-+|..|.+-|..||.
T Consensus 11 t~v~NlkssVS~~~l~ls~L~~Rv~~le~ 39 (211)
T 2vrs_A 11 TAISNLKSDISSNGLAITDLQDRVKSLES 39 (211)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhhhhhhhhhhhhhhhhhHHHHHHHHhc
Confidence 34445555666666666666666666663
No 241
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=43.82 E-value=42 Score=23.08 Aligned_cols=16 Identities=25% Similarity=0.218 Sum_probs=9.7
Q ss_pred hhhhHHHHHHHHHHHH
Q 028596 45 VSDLESEHSALRSQLA 60 (207)
Q Consensus 45 Vs~LEsE~~~LR~~La 60 (207)
+..||.++..|...-.
T Consensus 32 ~~~Le~~v~~L~~eN~ 47 (63)
T 2dgc_A 32 MKQLEDKVEELLSKNY 47 (63)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5666777776654433
No 242
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=43.71 E-value=34 Score=30.93 Aligned_cols=62 Identities=16% Similarity=0.260 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccc
Q 028596 67 AELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLKDD 129 (207)
Q Consensus 67 ~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDvaKLE~FKk~LmqSLq~D 129 (207)
.+|+.+.+.+-.++. +++..-++...|..|-..|...+|.|...+..++.=-..++.+|-+-
T Consensus 47 ~~l~~~~n~~sk~i~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipN~ 108 (425)
T 2dq3_A 47 EALRSERNKLSKEIG-KLKREGKDTTEIQNRVKELKEEIDRLEEELRKVEEELKNTLLWIPNL 108 (425)
T ss_dssp HHHHHHHHHHHHHTT-GGGSSCSCTTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCC
T ss_pred HHHHHHHHHHHHHHH-HHhhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 344444443333332 22222345566777788888888888888888888777888777543
No 243
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=43.52 E-value=2e+02 Score=26.42 Aligned_cols=17 Identities=6% Similarity=0.098 Sum_probs=8.2
Q ss_pred hhhhhHHHHHHHHHHHH
Q 028596 44 RVSDLESEHSALRSQLA 60 (207)
Q Consensus 44 RVs~LEsE~~~LR~~La 60 (207)
+|+++=+++..|+..+.
T Consensus 49 elsn~ts~v~~Lvk~iq 65 (409)
T 1m1j_C 49 QATNSTGSIEYLIQHIK 65 (409)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444445555554444
No 244
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=42.92 E-value=38 Score=21.21 Aligned_cols=22 Identities=9% Similarity=0.291 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 028596 58 QLAEKDSRIAELQSQIESIYSS 79 (207)
Q Consensus 58 ~LaEKd~~i~eLq~rvs~Le~~ 79 (207)
.++.-+...+.|+..+.+||.+
T Consensus 9 evaqaeaenyqleqevaqlehe 30 (33)
T 1fmh_A 9 EVAQAEAENYQLEQEVAQLEHE 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHh
Confidence 3344455556666666555543
No 245
>2pms_C Pneumococcal surface protein A (PSPA); lactoferrin, protein-protein metal transport, hydrolase; HET: NAG; 2.91A {Streptococcus pneumoniae} SCOP: h.4.19.1
Probab=42.75 E-value=37 Score=27.01 Aligned_cols=25 Identities=28% Similarity=0.419 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHH
Q 028596 92 ERLSKENEALTNTVRKLQRDVSKLE 116 (207)
Q Consensus 92 ~kL~kE~~sLa~TVKkL~RDvaKLE 116 (207)
..|++.++.|.+-|-+|..+|++|+
T Consensus 64 eeL~~ki~eL~~kvA~le~e~~~~e 88 (125)
T 2pms_C 64 EELSDKIDELDAEIAKLEDQLKAAE 88 (125)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 4466666666666666666666554
No 246
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=42.50 E-value=99 Score=22.72 Aligned_cols=17 Identities=24% Similarity=0.276 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHHH
Q 028596 64 SRIAELQSQIESIYSSL 80 (207)
Q Consensus 64 ~~i~eLq~rvs~Le~~L 80 (207)
.....|.+++..++.++
T Consensus 34 ~EN~~Lh~~ie~~~eEi 50 (79)
T 2zxx_A 34 KENEKLHKEIEQKDSEI 50 (79)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33444444444333333
No 247
>3ter_A Mammalian stromal interaction molecule-1; dimer, metal binding protein; 2.55A {Caenorhabditis elegans}
Probab=42.17 E-value=52 Score=26.47 Aligned_cols=29 Identities=14% Similarity=0.243 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 028596 82 DKLGQAQADKERLSKENEALTNTVRKLQR 110 (207)
Q Consensus 82 ~rL~~a~ee~~kL~kE~~sLa~TVKkL~R 110 (207)
-+|..|.+.+.||.+-|.++-.+++-.+-
T Consensus 59 kql~~Ake~~eKlkKKrsSv~gs~~~aHs 87 (136)
T 3ter_A 59 KEMKEAIEMVDRLQKKQGSVLSSLKLATG 87 (136)
T ss_dssp HHHHHHHHHHHHHHHC------CCCCCCS
T ss_pred HHHHHHHHHHHHHHHhhhchheeeeeecC
Confidence 55668888889998888888777665544
No 248
>3k29_A Putative uncharacterized protein; YSCO, type III secretion apparatus, S genomics, csgid; HET: MSE; 2.00A {Chlamydia trachomatis}
Probab=42.16 E-value=1.5e+02 Score=24.66 Aligned_cols=60 Identities=18% Similarity=0.273 Sum_probs=46.0
Q ss_pred CCCCchhhHHHHH-H-H--HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 22 LPSDPFEQLDVAR-K-I--TSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (207)
Q Consensus 22 LP~DP~EQLdlAr-k-I--ts~A~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~ 81 (207)
+|.-|.+||=--+ + + +-.+++.+.-.||.|-..||..-+++|......+.++..|-..+-
T Consensus 2 m~~yple~~~~~k~~r~e~aek~~~~k~~~le~ek~~l~~~e~~r~k~~~h~~~k~~qlre~~d 65 (169)
T 3k29_A 2 MVRYPLEPVLSIKKDRVDRAEKVVKEKRRLLELEQEKLRERESERDKVKNHYMQKIRQLREQLD 65 (169)
T ss_dssp CCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4777888863221 1 1 234889999999999999999999999998888888888766654
No 249
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=42.13 E-value=51 Score=28.54 Aligned_cols=10 Identities=30% Similarity=0.371 Sum_probs=6.1
Q ss_pred HHHHHHHHHh
Q 028596 115 LEVFRKTLVQ 124 (207)
Q Consensus 115 LE~FKk~Lmq 124 (207)
+|++=+.+|.
T Consensus 71 aenlf~eII~ 80 (233)
T 2yko_A 71 LENTLQDIIQ 80 (233)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666666654
No 250
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=41.98 E-value=77 Score=23.62 Aligned_cols=31 Identities=29% Similarity=0.473 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 028596 86 QAQADKERLSKENEALTNTVRKLQRDVSKLE 116 (207)
Q Consensus 86 ~a~ee~~kL~kE~~sLa~TVKkL~RDvaKLE 116 (207)
.++++|.+|.++...|..-+..|...+..|.
T Consensus 43 eaL~EN~~Lh~~ie~l~eEi~~lk~en~eL~ 73 (83)
T 1uii_A 43 EALKENEKLHKEIEQKDNEIARLKKENKELA 73 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555554444444444444443
No 251
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=41.97 E-value=96 Score=27.87 Aligned_cols=41 Identities=20% Similarity=0.410 Sum_probs=21.9
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSL 80 (207)
Q Consensus 40 A~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L 80 (207)
-+.+||..|..--..|-+.|..+...+.+|++++++|.-.|
T Consensus 209 ~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~lkp~l 249 (373)
T 3hhm_B 209 KLKSRISEIIDSRRRLEEDLKKQAAEYREIDKRMNSIKPDL 249 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccChHH
Confidence 45555555555555555555555555555555555444443
No 252
>1y1u_A Signal transducer and activator of transcription; STAT, DNA-binding, SH2 domain, transcription REGU signaling protein; 3.21A {Mus musculus}
Probab=41.51 E-value=2e+02 Score=27.72 Aligned_cols=45 Identities=16% Similarity=0.180 Sum_probs=26.2
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 37 TSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (207)
Q Consensus 37 ts~A~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~ 81 (207)
.+.++..+-..+|..+..||....+.++.+..|++.-..+.-.++
T Consensus 6 ~~~~~~~~~~eI~~~v~~l~~~~q~~e~~~k~Le~~Qe~F~~~y~ 50 (585)
T 1y1u_A 6 LVDAMSQKHLQINQRFEELRLITQDTENELKKLQQTQEYFIIQYQ 50 (585)
T ss_dssp -----CCSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 444555666667777777777777777777666665555554444
No 253
>3c9i_A Tail needle protein GP26; xenon, coiled-coil, protein fiber, coiled coil, late protein, viral protein; 1.95A {Bacteriophage P22} PDB: 2poh_A
Probab=41.49 E-value=1.8e+02 Score=25.36 Aligned_cols=45 Identities=18% Similarity=0.294 Sum_probs=26.1
Q ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 028596 72 QIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLE 116 (207)
Q Consensus 72 rvs~Le~~L~---~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDvaKLE 116 (207)
|+..-+.+|. -|+..++.+..-|.-+-..|..+|....-.++-|+
T Consensus 99 RIt~~~~~ia~~e~Rit~~e~~i~~l~~~v~~ld~~vt~~et~Isal~ 146 (242)
T 3c9i_A 99 RITANTKAITALNVRVTTAEGEIASLQTNVSALDGRVTTAENNISALQ 146 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred Hhhhhhhhhhhhhheeecccccchhhhhhhhhhcccccccccchhhhh
Confidence 4444444444 45556666666666666666666666555555544
No 254
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=41.30 E-value=39 Score=25.87 Aligned_cols=30 Identities=17% Similarity=0.266 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 028596 86 QAQADKERLSKENEALTNTVRKLQRDVSKL 115 (207)
Q Consensus 86 ~a~ee~~kL~kE~~sLa~TVKkL~RDvaKL 115 (207)
+..+...+|.+|+..|...+++|.+.++..
T Consensus 29 ~l~~~v~~l~~e~k~l~ke~~~l~~~~a~~ 58 (171)
T 2zvf_A 29 KLPKTVERFFEEWKDQRKEIERLKSVIADL 58 (171)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455555555555555555555555543
No 255
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=41.29 E-value=1.1e+02 Score=27.53 Aligned_cols=40 Identities=20% Similarity=0.272 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccc
Q 028596 89 ADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLKD 128 (207)
Q Consensus 89 ee~~kL~kE~~sLa~TVKkL~RDvaKLE~FKk~LmqSLq~ 128 (207)
++...|..|-..|...+|.|...+..++.=-..++.+|-+
T Consensus 64 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipN 103 (421)
T 1ses_A 64 EEKEALIARGKALGEEAKRLEEALREKEARLEALLLQVPL 103 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 4556677777777788888888877777777777776654
No 256
>2olt_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: MSE; 2.00A {Shewanella oneidensis} PDB: 2iiu_A*
Probab=41.21 E-value=1.3e+02 Score=23.78 Aligned_cols=16 Identities=25% Similarity=0.526 Sum_probs=6.0
Q ss_pred HHHhhCCCCchhhHHH
Q 028596 17 EVLQVLPSDPFEQLDV 32 (207)
Q Consensus 17 eilsvLP~DP~EQLdl 32 (207)
-++.++|.+||+-|.=
T Consensus 6 ~~~~lf~~s~f~~l~~ 21 (227)
T 2olt_A 6 SILGVFAKSPIKPLQE 21 (227)
T ss_dssp --------CTTHHHHH
T ss_pred hHHHHhccChHHHHHH
Confidence 3567789999887653
No 257
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=41.02 E-value=1.1e+02 Score=22.79 Aligned_cols=25 Identities=32% Similarity=0.485 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q 028596 86 QAQADKERLSKENEALTNTVRKLQR 110 (207)
Q Consensus 86 ~a~ee~~kL~kE~~sLa~TVKkL~R 110 (207)
.-.+++.+|+++.+.+...+++|..
T Consensus 55 ~h~~ei~~le~~i~rhk~~i~~l~~ 79 (84)
T 1gmj_A 55 HHAKEIERLQKEIERHKQSIKKLKQ 79 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4445555566665555555555543
No 258
>1ytz_T Troponin T; muscle, THIN filament, actin binding, calcium, contractIle protein; HET: DR6; 3.00A {Gallus gallus} SCOP: h.1.25.1 PDB: 1yv0_T 2w49_1 2w4u_1
Probab=40.96 E-value=48 Score=25.37 Aligned_cols=37 Identities=19% Similarity=0.319 Sum_probs=24.3
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESI 76 (207)
Q Consensus 40 A~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~L 76 (207)
-|-.|+-.||+|-=.|-.++..++-.|.+|..||..|
T Consensus 53 eLh~~I~~lEeEKYDlE~kv~kq~yEI~eL~~rV~dl 89 (107)
T 1ytz_T 53 ELWDWLYQLQTEKYDFAEQIKRKKYEIVTLRNRIDQA 89 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHh
Confidence 4455666677776666666666666777776666654
No 259
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=40.71 E-value=86 Score=21.87 Aligned_cols=10 Identities=20% Similarity=0.491 Sum_probs=3.7
Q ss_pred hHHHHHHHHH
Q 028596 48 LESEHSALRS 57 (207)
Q Consensus 48 LEsE~~~LR~ 57 (207)
+-.-+..||.
T Consensus 17 in~~f~~Lr~ 26 (83)
T 1nkp_B 17 IKDSFHSLRD 26 (83)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 260
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=40.47 E-value=39 Score=23.29 Aligned_cols=27 Identities=30% Similarity=0.567 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 028596 91 KERLSKENEALTNTVRKLQRDVSKLEV 117 (207)
Q Consensus 91 ~~kL~kE~~sLa~TVKkL~RDvaKLE~ 117 (207)
.+.|...|.+|..-+-.|.+|++.||.
T Consensus 26 varlendnanlekdianlekdianler 52 (56)
T 3he4_A 26 VARLENDNANLEKDIANLEKDIANLER 52 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcccchHHHHHHHHHHHHHHHHH
Confidence 356677777777777777777777764
No 261
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=40.44 E-value=1.3e+02 Score=23.32 Aligned_cols=77 Identities=17% Similarity=0.171 Sum_probs=35.3
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 27 FEQLDVARKITSIAISTRVSDLESEHSALRSQL-AEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTV 105 (207)
Q Consensus 27 ~EQLdlArkIts~A~atRVs~LEsE~~~LR~~L-aEKd~~i~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~~sLa~TV 105 (207)
-+.+.-.++=.+..+..+....|.=|..|=.-- .|. +-.+|+..|+.++. .+.++..+..+|.+.|-..|
T Consensus 52 ~~~f~~~~~ela~dli~k~kqIe~LIdsLP~~~~see-----~Q~~ri~~L~~E~~----~~~~el~~~v~e~e~ll~~v 122 (132)
T 1ykh_B 52 PEEFSNTIDELSTDIILKTRQINKLIDSLPGVDVSAE-----EQLRKIDMLQKKLV----EVEDEKIEAIKKKEKLMRHV 122 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTTCCHH-----HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHH-----HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 355554444445556666655555555554221 111 11233334444443 44444444455555555555
Q ss_pred HHHhhhH
Q 028596 106 RKLQRDV 112 (207)
Q Consensus 106 KkL~RDv 112 (207)
..+-+++
T Consensus 123 ~~~l~~i 129 (132)
T 1ykh_B 123 DSMIEDF 129 (132)
T ss_dssp HHHHHTT
T ss_pred HHHHHHH
Confidence 5554444
No 262
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=40.44 E-value=55 Score=24.44 Aligned_cols=31 Identities=26% Similarity=0.434 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 028596 86 QAQADKERLSKENEALTNTVRKLQRDVSKLE 116 (207)
Q Consensus 86 ~a~ee~~kL~kE~~sLa~TVKkL~RDvaKLE 116 (207)
.++++|.+|.++...+..-+-.|......|.
T Consensus 35 eaL~EN~~Lh~~ie~~~eEi~~Lk~en~~L~ 65 (83)
T 1wlq_A 35 EALKENEKLHKEIEQKDSEIARLRKENKDLA 65 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5556666666655555554444444444443
No 263
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=39.06 E-value=1.2e+02 Score=22.63 Aligned_cols=34 Identities=15% Similarity=0.214 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Q 028596 92 ERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQS 125 (207)
Q Consensus 92 ~kL~kE~~sLa~TVKkL~RDvaKLE~FKk~LmqS 125 (207)
..+..+.+.....+.+|.-++-|++.+--.|-++
T Consensus 58 ~s~~~~L~e~~~kid~L~~el~K~q~~L~e~e~~ 91 (98)
T 2ke4_A 58 ASLEPQIAETLSNIERLKLEVQKYEAWLAEAESR 91 (98)
T ss_dssp GGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3345666677777778888888888776666433
No 264
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=39.05 E-value=2.4e+02 Score=26.24 Aligned_cols=35 Identities=11% Similarity=0.097 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccccC
Q 028596 97 ENEALTNTVRKLQRDVSKLEVFRKTLVQSLKDDED 131 (207)
Q Consensus 97 E~~sLa~TVKkL~RDvaKLE~FKk~LmqSLq~D~~ 131 (207)
+...|...++.|..++..||.--+.+-..|++.--
T Consensus 117 ~~~~l~~~~~~l~~~i~~l~~~~~~~~~~l~~~l~ 151 (501)
T 1wle_A 117 QYQSLRARGREIRKQLTLLYPKEAQLEEQFYLRAL 151 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44577888888888888888777777777765433
No 265
>2zxx_A Geminin; coiled-coil, cell cycle, coiled coil, DNA replication inhibitor, phosphoprotein, DNA-binding, nucleus, proto-oncogene; HET: DNA; 2.80A {Mus musculus}
Probab=39.04 E-value=82 Score=23.18 Aligned_cols=23 Identities=30% Similarity=0.450 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 028596 86 QAQADKERLSKENEALTNTVRKL 108 (207)
Q Consensus 86 ~a~ee~~kL~kE~~sLa~TVKkL 108 (207)
.++++|.+|-++...+..-+.+|
T Consensus 31 eaL~EN~~Lh~~ie~~~eEi~~L 53 (79)
T 2zxx_A 31 EALKENEKLHKEIEQKDSEIARL 53 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444333333
No 266
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=38.95 E-value=2.5e+02 Score=26.31 Aligned_cols=41 Identities=5% Similarity=0.092 Sum_probs=26.8
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (207)
Q Consensus 41 ~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~ 81 (207)
+...+..||..+..|-++-.+--+.|..|+..+...+.++.
T Consensus 98 V~~~LqeLe~~l~~lsn~Ts~~~~~i~~Iq~slk~~Q~Qi~ 138 (464)
T 1m1j_B 98 VKPVLRDLKDRVAKFSDTSTTMYQYVNMIDNKLVKTQKQRK 138 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhccccccc
Confidence 55666777777766665555555566667777776666665
No 267
>2yo3_A General control protein GCN4, putative inner MEMB protein, general control protein...; HANS motif, YADA-like head, ylhead; 2.00A {Saccharomyces cerevisiae}
Probab=38.64 E-value=63 Score=28.57 Aligned_cols=39 Identities=15% Similarity=0.388 Sum_probs=35.5
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 43 TRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (207)
Q Consensus 43 tRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~ 81 (207)
.|+..|...+..++.++...+..++++-.++-.||.+++
T Consensus 216 ~k~~~l~n~I~~V~n~~~q~~~~~~~~~~~~~~~~~~~~ 254 (268)
T 2yo3_A 216 QKMGEMNSKIKGVENKMKQIEDKIEEILSKIYHIENEIA 254 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 589999999999999999999999999999999998886
No 268
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=38.38 E-value=55 Score=21.20 Aligned_cols=22 Identities=32% Similarity=0.588 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 028596 51 EHSALRSQLAEKDSRIAELQSQ 72 (207)
Q Consensus 51 E~~~LR~~LaEKd~~i~eLq~r 72 (207)
|-..|-..+..||..|+.|+++
T Consensus 8 ENekLhk~ie~KdeeIa~Lk~e 29 (37)
T 1t6f_A 8 ENEKLHKEIEQKDNEIARLKKE 29 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3345555566666666665544
No 269
>1lq7_A Alpha3W; three helix bundle, de novo protein; NMR {} SCOP: k.9.1.1
Probab=38.20 E-value=35 Score=24.23 Aligned_cols=12 Identities=50% Similarity=0.595 Sum_probs=5.4
Q ss_pred hhhhhHHHHHHH
Q 028596 44 RVSDLESEHSAL 55 (207)
Q Consensus 44 RVs~LEsE~~~L 55 (207)
||..||..+..|
T Consensus 3 rvkaleekvkal 14 (67)
T 1lq7_A 3 RVKALEEKVKAL 14 (67)
T ss_dssp SHHHHHHHHHHH
T ss_pred hhHHHHHHHHHH
Confidence 444444444433
No 270
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=38.06 E-value=39 Score=29.47 Aligned_cols=45 Identities=13% Similarity=0.278 Sum_probs=21.0
Q ss_pred HHHHHHHhhhh---hHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Q 028596 37 TSIAISTRVSD---LESEHSALRSQLAE----KDSRIAELQSQIESIYSSLS 81 (207)
Q Consensus 37 ts~A~atRVs~---LEsE~~~LR~~LaE----Kd~~i~eLq~rvs~Le~~L~ 81 (207)
+..+|..=+.. -+..-..+++++.+ +...++.|+++...|+.++.
T Consensus 151 ~~~~Y~~fl~~~d~~~~~~~e~~~~~~~~~n~~~~eie~L~~~~~~L~eEi~ 202 (315)
T 2ve7_A 151 TIKCYESFMSGADSFDEMNAELQSKLKDLFNVDAFKLESLEAKNRALNEQIA 202 (315)
T ss_dssp HHHHHHHHHHTCSCCHHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455544443 22333333344433 34455566655555555553
No 271
>3tq2_A KE1; parallel three helix bundle, de novo protein; 1.10A {Synthetic}
Probab=37.94 E-value=77 Score=20.13 Aligned_cols=31 Identities=26% Similarity=0.362 Sum_probs=12.0
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 45 VSDLESEHSALRSQLAEKDSRIAELQSQIES 75 (207)
Q Consensus 45 Vs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~ 75 (207)
|+.|-..+..|+.|..----.+..|.++++.
T Consensus 3 vsalkekvsalkeqflmlmfkvsalkekvsa 33 (36)
T 3tq2_A 3 VSALKEKVSALKEQFLMLMFKVSALKEKVSA 33 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444433222223344444443
No 272
>3m0a_A TNF receptor-associated factor 2; TRAF2: CIAP2 and the TRAF1: TRAF2: CIAP2 complexes, apoptosi coil, cytoplasm, metal-binding; 2.61A {Homo sapiens} PDB: 3m0d_A 3m06_A
Probab=37.94 E-value=89 Score=20.89 Aligned_cols=60 Identities=18% Similarity=0.255 Sum_probs=27.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028596 48 LESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRD 111 (207)
Q Consensus 48 LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~~sLa~TVKkL~RD 111 (207)
|+.++..|..++..=+..+..+...+..+...+. ...+++...+.-...|.+.+..|.+-
T Consensus 3 ~~~~~~~le~k~~~~e~iv~~l~~~v~~~~~~le----~~~~q~~~~~~~i~~Le~k~~~l~~~ 62 (66)
T 3m0a_A 3 LLQRCESLEKKTATFENIVCVLNREVERVAMTAE----ACSRQHRLDQDKIEALSSKVQQLERS 62 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH----HHHhhhhHHHhHHHHHHHHHHHHHHH
Confidence 5555555555555444444444444444443332 22233333333344455555555443
No 273
>3fx0_A NF-kappa-B essential modulator; coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia, HOST-virus interaction; 3.20A {Homo sapiens}
Probab=37.75 E-value=21 Score=27.36 Aligned_cols=55 Identities=13% Similarity=0.299 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 49 ESEHSALRSQLAEKD---SRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRK 107 (207)
Q Consensus 49 EsE~~~LR~~LaEKd---~~i~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~~sLa~TVKk 107 (207)
..+|..|++.++.+. ..|.-|+.++.-....+. .=+.+-.++..|+..|...+-.
T Consensus 37 Q~~ideLKe~i~q~~~~~E~i~vL~aQ~~iY~~DF~----aERaaREk~~~EKe~L~~ql~~ 94 (96)
T 3fx0_A 37 QEVIDKLKEEAEQHKIVMETVPVLKAQADIYKADFQ----AERQAREKLAEKKELLQEQLEQ 94 (96)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHTSSTTSCC------
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH----HHHHHHHHHHhhHHHHHHHHHh
Confidence 455667777666555 556666666666555554 3344556666777666655443
No 274
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z*
Probab=37.61 E-value=1.8e+02 Score=26.55 Aligned_cols=86 Identities=14% Similarity=0.180 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHH---HH----
Q 028596 32 VARKITSIAISTRVSDLESEHSALRSQLAEK-----DSRIAELQSQIESIYSSLS--DKLGQAQADKERLS---KE---- 97 (207)
Q Consensus 32 lArkIts~A~atRVs~LEsE~~~LR~~LaEK-----d~~i~eLq~rvs~Le~~L~--~rL~~a~ee~~kL~---kE---- 97 (207)
+..++....-.-++..++.+...|-.++++- ......|-++++.|+..+. ..+....++...|. +|
T Consensus 14 ~~~~~~~~~~~~~l~~~~~r~~el~~~~~~p~~w~d~~~~~~~~ke~~~l~~~v~~~~~~~~~~~d~~~~~el~~~e~D~ 93 (365)
T 1gqe_A 14 LTERSDVLRGYLDYDAKKERLEEVNAELEQPDVWNEPERAQALGKERSSLEAVVDTLDQMKQGLEDVSGLLELAVEADDE 93 (365)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHHSGGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHhcCCccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCH
Confidence 3444444444455566666666666666543 2344555566666666665 45555555444333 22
Q ss_pred --HHHHHHHHHHHhhhHHHHHH
Q 028596 98 --NEALTNTVRKLQRDVSKLEV 117 (207)
Q Consensus 98 --~~sLa~TVKkL~RDvaKLE~ 117 (207)
+..+...++.|...+.+||.
T Consensus 94 e~~~~a~~e~~~l~~~l~~le~ 115 (365)
T 1gqe_A 94 ETFNEAVAELDALEEKLAQLEF 115 (365)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 13345667788888877774
No 275
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=37.53 E-value=49 Score=21.12 Aligned_cols=12 Identities=17% Similarity=0.473 Sum_probs=5.6
Q ss_pred hhhhhHHHHHHH
Q 028596 44 RVSDLESEHSAL 55 (207)
Q Consensus 44 RVs~LEsE~~~L 55 (207)
||++||..+..|
T Consensus 2 RM~QLEdKVEeL 13 (34)
T 1uo4_A 2 RMKQIEDKGEEI 13 (34)
T ss_dssp -CHHHHHHHHHH
T ss_pred chhHHHHHHHHH
Confidence 555555554444
No 276
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=37.53 E-value=83 Score=25.73 Aligned_cols=34 Identities=24% Similarity=0.284 Sum_probs=27.6
Q ss_pred HhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 43 TRVSDLESEHSALRSQLAEKDSRIAELQSQIESI 76 (207)
Q Consensus 43 tRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~L 76 (207)
.-+..||.|-.+++..+..|.+.+++|..+...+
T Consensus 5 qe~~~Le~Ek~~~~~rI~~K~~~LqeL~~Q~vaf 38 (155)
T 2aze_A 5 QECQNLEVERQRRLERIKQKQSQLQELILQQIAF 38 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567899999999999999999999988775544
No 277
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=37.49 E-value=30 Score=23.30 Aligned_cols=26 Identities=23% Similarity=0.330 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Q 028596 86 QAQADKERLSKENEALTNTVRKLQRD 111 (207)
Q Consensus 86 ~a~ee~~kL~kE~~sLa~TVKkL~RD 111 (207)
...++...|.+||..|...+..|...
T Consensus 31 ~v~~~~~~l~~e~~~L~~~~~~l~~~ 56 (57)
T 2wuj_A 31 QVRKDYEIVLRKKTELEAKVNELDER 56 (57)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 55566666777777777776666543
No 278
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=37.41 E-value=64 Score=28.11 Aligned_cols=25 Identities=16% Similarity=0.129 Sum_probs=10.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH
Q 028596 46 SDLESEHSALRSQLAEKDSRIAELQ 70 (207)
Q Consensus 46 s~LEsE~~~LR~~LaEKd~~i~eLq 70 (207)
...+.|+..|+.+..+-..+|++|+
T Consensus 181 n~~~~eie~L~~~~~~L~eEi~~Le 205 (315)
T 2ve7_A 181 NVDAFKLESLEAKNRALNEQIARLE 205 (315)
T ss_dssp TCCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445544444444444444443
No 279
>1bf5_A Signal transducer and activator of transcription 1-alpha/beta; complex (SH2 domain/DNA), SH2 domain, transcription factor; HET: DNA PTR; 2.90A {Homo sapiens} SCOP: a.47.1.1 b.2.5.5 d.93.1.1
Probab=37.38 E-value=2.3e+02 Score=27.38 Aligned_cols=33 Identities=24% Similarity=0.287 Sum_probs=18.7
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQ 72 (207)
Q Consensus 40 A~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~r 72 (207)
.+..+|..+|.++..|.+.-.+=+=..++++.+
T Consensus 13 ~l~~~~q~~e~~~k~Le~~Qe~f~~~y~~~~~~ 45 (575)
T 1bf5_A 13 NVKDKVMCIEHEIKSLEDLQDEYDFKCKTLQNR 45 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhh
Confidence 455566666666666665555555555555544
No 280
>3sjb_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.30A {Saccharomyces cerevisiae}
Probab=37.23 E-value=1.3e+02 Score=22.68 Aligned_cols=62 Identities=16% Similarity=0.258 Sum_probs=25.9
Q ss_pred HHHHhhhhhHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 40 AISTRVSDLESEHSALRSQLA-----EKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKL 108 (207)
Q Consensus 40 A~atRVs~LEsE~~~LR~~La-----EKd~~i~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~~sLa~TVKkL 108 (207)
..+.+..+|-.|+..||..+. +==+.-+-|+.++..|..+|. .-+..|...+.+...+|+||
T Consensus 20 ~~a~~~~~lk~E~~~lk~E~~stSaQDeFAKWaKL~Rk~DKl~~ele-------~l~~~l~~~k~~F~~~~~~~ 86 (93)
T 3sjb_C 20 ELSKKYLAKVKERHELKEFNNSISAQDNYAKWTKNNRKLDSLDKEIN-------NLKDEIQSENKAFQAHLHKL 86 (93)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTSCTTTCHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHC----
T ss_pred HhHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 344555556666666655543 111222334444444433332 33344444455555555544
No 281
>3kpe_A Fusion glycoprotein F0; peptide-small-molecule complex, alpha helix, coiled-coil, EN protein, fusion protein; HET: TM3 PG4; 1.47A {Human respiratory syncytial virus} PDB: 1g2c_A
Probab=37.10 E-value=98 Score=21.09 Aligned_cols=35 Identities=20% Similarity=0.339 Sum_probs=27.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 47 DLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (207)
Q Consensus 47 ~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~ 81 (207)
.||+||-.|+..+.+=.+.+.+|-.=+..+-.+++
T Consensus 1 ~le~~I~~Lk~ai~~TNeAV~~L~~g~~~la~Av~ 35 (51)
T 3kpe_A 1 HLEGEVNKIKSALLSTNKAVVSLSNGVSVLTSKVL 35 (51)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 38899999999888888888888777766666664
No 282
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=36.98 E-value=1.5e+02 Score=23.25 Aligned_cols=23 Identities=17% Similarity=0.290 Sum_probs=18.2
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHH
Q 028596 40 AISTRVSDLESEHSALRSQLAEK 62 (207)
Q Consensus 40 A~atRVs~LEsE~~~LR~~LaEK 62 (207)
.|-+|+.+||.|...|.++=.++
T Consensus 6 ~V~s~l~~LEaeyq~L~~kE~qr 28 (119)
T 2avr_X 6 SLVGELQALDAEYQNLANQEEAR 28 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 47789999999998887765544
No 283
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=36.95 E-value=50 Score=23.12 Aligned_cols=28 Identities=14% Similarity=0.243 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 028596 88 QADKERLSKENEALTNTVRKLQRDVSKL 115 (207)
Q Consensus 88 ~ee~~kL~kE~~sLa~TVKkL~RDvaKL 115 (207)
.+=+..|++++..|...+..|.+.+..|
T Consensus 46 i~YI~~L~~~~~~l~~e~~~L~~~~~~L 73 (83)
T 1nkp_B 46 TEYIQYMRRKNHTHQQDIDDLKRQNALL 73 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444433333
No 284
>3l4q_C Phosphatidylinositol 3-kinase regulatory subunit beta; PI3K, phosphoinositide-3-kinase, influenza virus, NS1; 2.30A {Bos taurus} PDB: 2v1y_B
Probab=36.87 E-value=1.8e+02 Score=23.95 Aligned_cols=57 Identities=16% Similarity=0.314 Sum_probs=42.8
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRK 107 (207)
Q Consensus 40 A~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~~sLa~TVKk 107 (207)
-+.+|+..|+.--..|-..|..+...+.+|++++++|--.|. +|.+.++....-++.
T Consensus 100 ~LksRL~~l~~sk~~L~e~L~~q~~~~relERemnsLKPeL~-----------qL~K~rD~yl~wL~~ 156 (170)
T 3l4q_C 100 RLKSRIAEIHESRTKLEQELRAQASDNREIDKRMNSLKPDLM-----------QLRKIRDQYLVWLTQ 156 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH-----------HHHHHHHHHHHHHHH
Confidence 677888888888888888888888888888888887776665 566666665544443
No 285
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=36.84 E-value=29 Score=21.09 Aligned_cols=21 Identities=29% Similarity=0.355 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 028596 53 SALRSQLAEKDSRIAELQSQI 73 (207)
Q Consensus 53 ~~LR~~LaEKd~~i~eLq~rv 73 (207)
++|+++-+.-.++|+.|+-.+
T Consensus 3 rrlkqknarlkqeiaaleyei 23 (28)
T 3ra3_B 3 RRLKQKNARLKQEIAALEYEI 23 (28)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhhhHHHHHHHHHHHHH
Confidence 344444443333444443333
No 286
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=36.34 E-value=1.9e+02 Score=24.13 Aligned_cols=71 Identities=10% Similarity=0.203 Sum_probs=36.6
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Q 028596 45 VSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQ 124 (207)
Q Consensus 45 Vs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDvaKLE~FKk~Lmq 124 (207)
+..|+.+...|..+.....+.+..|.+++..+ . +.|-.-|.+-+..-|--||--=+|+..+++.|.+
T Consensus 134 ~~~~~~~~~~L~~e~~~l~~~~~~l~~qlE~~-----------v--~~K~~~E~~L~~KF~~lLNeKK~KIR~lq~~Ll~ 200 (213)
T 1ik9_A 134 IAENQAKNEHLQKENERLLRDWNDVQGRFEKA-----------V--SAKEALETDLYKRFILVLNEKKTKIRSLHNKLLN 200 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------H--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------H--HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 44666666666555554444444444333211 1 1223344555555555566666666666666666
Q ss_pred hccc
Q 028596 125 SLKD 128 (207)
Q Consensus 125 SLq~ 128 (207)
..|+
T Consensus 201 ~~~~ 204 (213)
T 1ik9_A 201 AAQE 204 (213)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5554
No 287
>3cl3_D NF-kappa-B essential modulator; death effector domain, coiled-coil, coiled coil, cytoplasm, disease mutation, ectodermal dysplasia; 3.20A {Homo sapiens}
Probab=36.33 E-value=85 Score=25.16 Aligned_cols=39 Identities=33% Similarity=0.410 Sum_probs=13.6
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (207)
Q Consensus 40 A~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~ 81 (207)
++..+++.+|+|...+++++. -.|..|+=++.+++.+|.
T Consensus 34 ~~e~~~~~~~~Elee~kqq~~---~~~d~L~lQ~esmeaalk 72 (130)
T 3cl3_D 34 AASEQARQLESEREALQQQHS---VQVDQLRMQGQSVEAALR 72 (130)
T ss_dssp -----------------CTTT---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 445555666666666555443 234556667777777776
No 288
>3a5t_A Transcription factor MAFG; protein-DNA complex, BZIP factor, acetylation, DNA-binding, isopeptide bond, nucleus; 2.80A {Mus musculus}
Probab=36.30 E-value=2.4 Score=32.77 Aligned_cols=23 Identities=17% Similarity=0.170 Sum_probs=17.7
Q ss_pred CCCCCCChHHHHhhCCCCchhhH
Q 028596 8 AGSTFDLPEEVLQVLPSDPFEQL 30 (207)
Q Consensus 8 ~~~~f~Lp~eilsvLP~DP~EQL 30 (207)
|..-..|+++-|.-||.+-|.++
T Consensus 2 ~~~~~~~sd~~Lv~m~v~elN~~ 24 (107)
T 3a5t_A 2 SHMGTSLTDEELVTMSVRELNQH 24 (107)
T ss_dssp -CCCCCCCHHHHHHSCHHHHHHT
T ss_pred CCCCCCCCHHHHhcCCHHHHHHH
Confidence 33356889999999999888765
No 289
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=36.24 E-value=2.4e+02 Score=26.77 Aligned_cols=15 Identities=13% Similarity=0.426 Sum_probs=7.7
Q ss_pred HHHHHHHhhhHHHHH
Q 028596 102 TNTVRKLQRDVSKLE 116 (207)
Q Consensus 102 a~TVKkL~RDvaKLE 116 (207)
.+.++.|+.++..|+
T Consensus 566 ~~~~~~~~~ei~~l~ 580 (592)
T 1f5n_A 566 QKESRIMKNEIQDLQ 580 (592)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 345555555555443
No 290
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=36.24 E-value=1.5e+02 Score=27.13 Aligned_cols=34 Identities=15% Similarity=0.105 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhhcccccC
Q 028596 98 NEALTNTVRKLQRDVSKLEVFRKTLVQSLKDDED 131 (207)
Q Consensus 98 ~~sLa~TVKkL~RDvaKLE~FKk~LmqSLq~D~~ 131 (207)
...|...++.|..++..||.--+.+-..|++---
T Consensus 71 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (455)
T 2dq0_A 71 VDELLAKSREIVKRIGELENEVEELKKKIDYYLW 104 (455)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466777777777777777777777666655443
No 291
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C
Probab=36.21 E-value=1.8e+02 Score=23.92 Aligned_cols=27 Identities=19% Similarity=0.179 Sum_probs=15.7
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhc
Q 028596 100 ALTNTVRKLQRDVSKLEVFRKTLVQSL 126 (207)
Q Consensus 100 sLa~TVKkL~RDvaKLE~FKk~LmqSL 126 (207)
+......+|..-+++.|.==..|.++|
T Consensus 125 sp~~L~~~L~~a~~e~eeeS~~l~~~F 151 (192)
T 2p22_C 125 GDIALKKKLEQNTKKLDEESSQLETTT 151 (192)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445556666666666666666666
No 292
>3mtu_E Head morphogenesis protein, tropomyosin alpha-1 C; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Bacillus phage PHI29}
Probab=35.73 E-value=1.3e+02 Score=22.11 Aligned_cols=45 Identities=20% Similarity=0.355 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 61 EKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRKL 108 (207)
Q Consensus 61 EKd~~i~eLq~rvs~Le~~L~---~rL~~a~ee~~kL~kE~~sLa~TVKkL 108 (207)
|+.+.+..|+.-+.+.|..+- ++|....+++..+..+ |-.|..-|
T Consensus 27 ~~~~~~~~~~~~~~~~EKTIDDLEDkL~~eKEK~k~i~ee---LDqTL~EL 74 (77)
T 3mtu_E 27 ERTEALQQLRVNYGSFVSEYNDLEEKVAHAKEENLNMHQM---LDQTLLEL 74 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH---HHHHHHHh
Confidence 444455555555555555554 4444555555555555 44444444
No 293
>1gqe_A Release factor 2, RF2; protein synthesis, ribosome, macromolecular mimicry, translation; 1.81A {Escherichia coli} SCOP: e.38.1.1 PDB: 1mi6_A 1ml5_Z*
Probab=35.05 E-value=2.6e+02 Score=25.41 Aligned_cols=15 Identities=33% Similarity=0.605 Sum_probs=6.5
Q ss_pred HhhhhhHHHHHHHHH
Q 028596 43 TRVSDLESEHSALRS 57 (207)
Q Consensus 43 tRVs~LEsE~~~LR~ 57 (207)
.++..|...+..|+.
T Consensus 9 ~~~~~~~~~~~~~~~ 23 (365)
T 1gqe_A 9 NRIQDLTERSDVLRG 23 (365)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444443
No 294
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=34.91 E-value=1.1e+02 Score=21.72 Aligned_cols=21 Identities=19% Similarity=0.379 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHhhhH
Q 028596 92 ERLSKENEALTNTVRKLQRDV 112 (207)
Q Consensus 92 ~kL~kE~~sLa~TVKkL~RDv 112 (207)
.+|..|++.|.....-|.+.+
T Consensus 57 ~~l~~e~~~L~~e~~~L~~~L 77 (80)
T 1nlw_A 57 RKAVHQIDQLQREQRHLKRQL 77 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444443333
No 295
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=34.78 E-value=1.5e+02 Score=22.61 Aligned_cols=40 Identities=15% Similarity=0.161 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcc
Q 028596 88 QADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLK 127 (207)
Q Consensus 88 ~ee~~kL~kE~~sLa~TVKkL~RDvaKLE~FKk~LmqSLq 127 (207)
.+-..-|.+..+.|...+++|..++.+++.--+++...|+
T Consensus 97 ~eA~~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~ 136 (151)
T 2zdi_C 97 DEAISFLEKRLKEYDEAIKKTQGALAELEKRIGEVARKAQ 136 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556666667777777777777777766666555544
No 296
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=34.35 E-value=1.1e+02 Score=23.68 Aligned_cols=44 Identities=9% Similarity=0.190 Sum_probs=20.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Q 028596 48 LESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADK 91 (207)
Q Consensus 48 LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~---~rL~~a~ee~ 91 (207)
|-.|+...+.++.+=...+.+|+..+..||.+=- .||+...-=+
T Consensus 9 l~~eL~~~~~ei~~L~~ei~eLk~~ve~lEkERDFYF~KLRdIEiLc 55 (106)
T 4e61_A 9 IQAELTKSQETIGSLNEEIEQYKGTVSTLEIEREFYFNKLRDIEILV 55 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444555555555544422 5665544333
No 297
>1wlo_A SUFE protein; structural genomics, riken structural genomics/proteomics in RSGI, unknown function; NMR {Thermus thermophilus}
Probab=34.32 E-value=20 Score=28.04 Aligned_cols=46 Identities=26% Similarity=0.356 Sum_probs=36.7
Q ss_pred CCCChHHHHhhCCCCchhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Q 028596 11 TFDLPEEVLQVLPSDPFEQLDVARKITSIAISTRVSDLESEHSALRSQLAE 61 (207)
Q Consensus 11 ~f~Lp~eilsvLP~DP~EQLdlArkIts~A~atRVs~LEsE~~~LR~~LaE 61 (207)
+-.=|+||+++=| +=|++|.|...++ .+|.+.|.+=+.++|.+..+
T Consensus 87 ~G~tp~eIl~~d~-~~~~~lGL~~~LS----psR~nGl~am~~~ik~~a~~ 132 (136)
T 1wlo_A 87 EGESPEAVLEVPP-GFYRGYGLEEFFT----PLRLRGLEAALLRLQAQVRK 132 (136)
T ss_dssp TTCCTTTTTSSCT-TTTTTTTSHHHHT----HHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHhCCH-HHHHHcCchhhcC----chHHHHHHHHHHHHHHHHHH
Confidence 4456899999888 7899999998666 58898888888888776543
No 298
>1yvl_A Signal transducer and activator of transcription 1-alpha/beta; signaling protein; HET: PTR; 3.00A {Homo sapiens}
Probab=33.94 E-value=2.2e+02 Score=28.06 Aligned_cols=38 Identities=11% Similarity=0.182 Sum_probs=22.5
Q ss_pred HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 41 ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYS 78 (207)
Q Consensus 41 ~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~ 78 (207)
+..+-..++..+..||..+.+-++.|..|++.-..+.-
T Consensus 135 ~~~~~~~i~~~v~~lr~~~q~~e~~ik~Le~~Qe~f~~ 172 (683)
T 1yvl_A 135 MLDKQKELDSKVRNVKDKVMCIEHEIKSLEDLQDEYDF 172 (683)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455566666677777666666666555555444443
No 299
>1ni7_A ER75, hypothetical protein YGDK; RD-structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Escherichia coli} SCOP: d.224.1.1
Probab=33.86 E-value=6.4 Score=31.75 Aligned_cols=50 Identities=14% Similarity=0.182 Sum_probs=39.7
Q ss_pred CCCChHHHHhhCCCCchhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Q 028596 11 TFDLPEEVLQVLPSDPFEQLDVARKITSIAISTRVSDLESEHSALRSQLAEKDS 64 (207)
Q Consensus 11 ~f~Lp~eilsvLP~DP~EQLdlArkIts~A~atRVs~LEsE~~~LR~~LaEKd~ 64 (207)
+-.=|+||+++=|.|=|++|.|..-++ .+|.+.|.+=+.++|.+..+.-+
T Consensus 100 ~G~tp~eIl~~d~~~f~~~lGL~~~LS----psR~NGl~am~~~ik~~a~~~~~ 149 (155)
T 1ni7_A 100 EGKTAAELQAQSPLALFDELGLRAQLS----ASRSQGLNALSEAIIAATKQVLE 149 (155)
T ss_dssp TTCCHHHHHHSCTHHHHHHHTSSSSSC----HHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cCCCHHHHHhCCHHHHHHHcCchhhcC----chHHHHHHHHHHHHHHHHHHHHH
Confidence 445699999998878899999987665 37999999888888887765543
No 300
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=33.85 E-value=1.3e+02 Score=21.48 Aligned_cols=32 Identities=22% Similarity=0.292 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 028596 86 QAQADKERLSKENEALTNTVRKLQRDVSKLEV 117 (207)
Q Consensus 86 ~a~ee~~kL~kE~~sLa~TVKkL~RDvaKLE~ 117 (207)
....+...+.++...|....+.+...+.+|+.
T Consensus 74 ~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~ 105 (117)
T 2zqm_A 74 ELKEKIETLEVRLNALERQEKKLNEKLKELTA 105 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555555444443
No 301
>1j1d_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 2.61A {Homo sapiens} SCOP: h.1.25.2
Probab=33.67 E-value=84 Score=24.96 Aligned_cols=39 Identities=18% Similarity=0.376 Sum_probs=22.6
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYS 78 (207)
Q Consensus 40 A~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~ 78 (207)
-|-.|+..||+|-=.|-.++..++-.|.+|..||+.|..
T Consensus 69 eLh~~I~~LEeEKYDlE~kvkkq~yEI~dL~~rV~Dl~g 107 (133)
T 1j1d_C 69 QLHARVDKVDEERYDIEAKVTKNITEIADLTQKIFDLRG 107 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHhhhHHHHHHHcchHHHHHHHHHHHHHc
Confidence 344555566666666666666666666666666665543
No 302
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli}
Probab=33.64 E-value=2e+02 Score=23.67 Aligned_cols=8 Identities=38% Similarity=0.737 Sum_probs=3.6
Q ss_pred EEeecCCC
Q 028596 189 LRVSIPNK 196 (207)
Q Consensus 189 ~~~~~~~~ 196 (207)
+++.+||.
T Consensus 247 v~i~~~~~ 254 (341)
T 3fpp_A 247 ARFEVPNP 254 (341)
T ss_dssp EEEEEECS
T ss_pred EEEEeCCC
Confidence 44444443
No 303
>2xus_A Breast cancer metastasis-suppressor 1; protein binding; 1.912A {Homo sapiens}
Probab=33.60 E-value=68 Score=21.73 Aligned_cols=29 Identities=24% Similarity=0.409 Sum_probs=19.3
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 44 RVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (207)
Q Consensus 44 RVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~ 81 (207)
=++.||.+-..||.++. ++|+++++.+|+
T Consensus 14 ~l~~LEkqF~~LkEqlY---------~ERl~ql~~~Le 42 (49)
T 2xus_A 14 EMLDLEKQFSELKEKLF---------RERLSQLRLRLE 42 (49)
T ss_dssp HHHHHHHHHHHHHHHHH---------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH---------HHHHHHHHHHHH
Confidence 46678888888888876 245555555554
No 304
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=33.21 E-value=1.5e+02 Score=21.97 Aligned_cols=38 Identities=13% Similarity=0.276 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccc
Q 028596 91 KERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQSLKD 128 (207)
Q Consensus 91 ~~kL~kE~~sLa~TVKkL~RDvaKLE~FKk~LmqSLq~ 128 (207)
..-|.+..+.|...+++|.+++.++..--+++...|++
T Consensus 90 ~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~ 127 (133)
T 1fxk_C 90 MESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEE 127 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566677788888888888888888888887776654
No 305
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=33.02 E-value=68 Score=20.45 Aligned_cols=11 Identities=18% Similarity=0.416 Sum_probs=4.8
Q ss_pred hhhhhHHHHHH
Q 028596 44 RVSDLESEHSA 54 (207)
Q Consensus 44 RVs~LEsE~~~ 54 (207)
||++||..+..
T Consensus 2 RMnQLEdKVEe 12 (34)
T 3c3f_A 2 RMXQIEXKLEX 12 (34)
T ss_dssp CHHHHHHHHHH
T ss_pred cHHHHHHHHHH
Confidence 44444444433
No 306
>2xzr_A Immunoglobulin-binding protein EIBD; cell adhesion, trimeric autotransporter adhesin, TAA; 2.80A {Enterobacteria phage p-eibd}
Probab=32.45 E-value=1.8e+02 Score=22.68 Aligned_cols=79 Identities=11% Similarity=0.279 Sum_probs=40.7
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH-------Hh
Q 028596 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS---DKLGQAQADKERLSKENEALTNTVRK-------LQ 109 (207)
Q Consensus 40 A~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~---~rL~~a~ee~~kL~kE~~sLa~TVKk-------L~ 109 (207)
|+..|......-++.+-..++--.+.|..=-.++....++|| +||..-...+..=-+|-..+++++-. |.
T Consensus 17 ~~~~~~~ri~~aig~~d~ri~~NtqaI~~NS~aiaanTr~lQqh~aRlnsqQrQI~ENhkEMKq~aaqsaaLlsk~yh~e 96 (114)
T 2xzr_A 17 HIENEIARIKKLIGAIDGRVTRNTQSIEKNSKAIAANTRTLQQHSARLDSQQRQINENHKEMKQIEDKIEEILSKIYHIE 96 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcchHHHHHHHHhhhhHHHHhhHHHHHhchHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 556666666666666655555555555555555566666666 55544333333333344444444433 44
Q ss_pred hhHHHHHHH
Q 028596 110 RDVSKLEVF 118 (207)
Q Consensus 110 RDvaKLE~F 118 (207)
.+|++|+.+
T Consensus 97 ne~ar~kkl 105 (114)
T 2xzr_A 97 NEIARIKKL 105 (114)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 455555443
No 307
>1pl5_A Regulatory protein SIR4; parallel coiled coil homodimer, DNA binding protein/transcription complex; 2.50A {Saccharomyces cerevisiae} SCOP: h.1.23.1
Probab=32.39 E-value=84 Score=25.04 Aligned_cols=43 Identities=35% Similarity=0.479 Sum_probs=22.8
Q ss_pred hhhHHHHHHHHHH------HHHHhhhhhHHH-------HHHHHHHHHHHHHHHHHH
Q 028596 27 FEQLDVARKITSI------AISTRVSDLESE-------HSALRSQLAEKDSRIAEL 69 (207)
Q Consensus 27 ~EQLdlArkIts~------A~atRVs~LEsE-------~~~LR~~LaEKd~~i~eL 69 (207)
.-||.||-.|+.- ----|+..|... ...-|.++.|||+.|..|
T Consensus 73 ekqlavaneiirslsdevmrneiritslqgdltftkkclenarsqisekdakinkl 128 (142)
T 1pl5_A 73 EKQLAVANEIIRSLSDEVMRNEIRITSLQGDLTFTKKCLENARSQISEKDAKINKL 128 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhHHHHHhhheeeeeeccchhhHHHHHHHHHhhhhhhhHHHHHH
Confidence 3478888766542 122244444444 234456666666666544
No 308
>2y7c_A Type-1 restriction enzyme ecoki specificity prote; transferase; 18.00A {Escherichia coli} PDB: 2y7h_A*
Probab=32.39 E-value=2.2e+02 Score=23.80 Aligned_cols=22 Identities=23% Similarity=0.534 Sum_probs=12.5
Q ss_pred ChHHHHh----hCCCCchhhHHHHHHH
Q 028596 14 LPEEVLQ----VLPSDPFEQLDVARKI 36 (207)
Q Consensus 14 Lp~eils----vLP~DP~EQLdlArkI 36 (207)
|....+. .||+ -.||-.++.+|
T Consensus 360 i~~~~l~~~~i~lPp-l~EQ~~Iv~~l 385 (464)
T 2y7c_A 360 ISGKDIKSQVVLLPP-VKEQAEIVRRV 385 (464)
T ss_dssp CCHHHHHHCEEEECC-HHHHHHHHHHH
T ss_pred ecHHHHhcCcCCCCC-HHHHHHHHHHH
Confidence 5555554 4564 55777666543
No 309
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=32.21 E-value=2.2e+02 Score=26.44 Aligned_cols=24 Identities=17% Similarity=0.230 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHH
Q 028596 90 DKERLSKENEALTNTVRKLQRDVS 113 (207)
Q Consensus 90 e~~kL~kE~~sLa~TVKkL~RDva 113 (207)
...-|+.-.+.+.-.+++|.-|+.
T Consensus 135 ~ir~Lq~~l~~q~~kiqRLE~~Id 158 (390)
T 1deq_A 135 RINLLQKNVRDQLVDMKRLEVDID 158 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444445555555553
No 310
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=31.98 E-value=1.4e+02 Score=21.47 Aligned_cols=21 Identities=5% Similarity=0.135 Sum_probs=11.5
Q ss_pred HHHHhhhhhHHHHHHHHHHHH
Q 028596 40 AISTRVSDLESEHSALRSQLA 60 (207)
Q Consensus 40 A~atRVs~LEsE~~~LR~~La 60 (207)
+|-..|..+..++..|+..+.
T Consensus 9 ~F~~~v~~I~~~i~~i~~~v~ 29 (127)
T 1ez3_A 9 EFFEQVEEIRGFIDKIAENVE 29 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 355556566666655555443
No 311
>2rr9_C Putative uncharacterized protein UIMC1; Lys63-linked diubiquitin, ubiquitin-interacting motif, ubiqu RAP80, DNA repair, nuclear protein; NMR {Homo sapiens}
Probab=31.91 E-value=1.2e+02 Score=20.40 Aligned_cols=9 Identities=44% Similarity=0.346 Sum_probs=5.3
Q ss_pred hhhHHHHHH
Q 028596 27 FEQLDVARK 35 (207)
Q Consensus 27 ~EQLdlArk 35 (207)
.|||.||-|
T Consensus 4 EEq~ALA~k 12 (46)
T 2rr9_C 4 EEQFALALK 12 (46)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 467666653
No 312
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=31.72 E-value=2.2e+02 Score=25.51 Aligned_cols=9 Identities=22% Similarity=0.294 Sum_probs=5.2
Q ss_pred CchhhHHHH
Q 028596 25 DPFEQLDVA 33 (207)
Q Consensus 25 DP~EQLdlA 33 (207)
+|..++.+-
T Consensus 162 ~~~~rr~~L 170 (517)
T 4ad8_A 162 SPANQRGLL 170 (517)
T ss_dssp SHHHHHHHH
T ss_pred CHHHHHHHH
Confidence 666665543
No 313
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=31.53 E-value=1.8e+02 Score=22.56 Aligned_cols=16 Identities=31% Similarity=0.362 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHH
Q 028596 66 IAELQSQIESIYSSLS 81 (207)
Q Consensus 66 i~eLq~rvs~Le~~L~ 81 (207)
|.+||+.+...|.+|.
T Consensus 37 ieeLQ~Ei~~~E~QL~ 52 (107)
T 2k48_A 37 LQELQENITAHEQQLV 52 (107)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4455555555555554
No 314
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=31.36 E-value=1.5e+02 Score=21.38 Aligned_cols=40 Identities=25% Similarity=0.424 Sum_probs=20.6
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 42 STRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (207)
Q Consensus 42 atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~ 81 (207)
..|+..+|.+-..|..++..=...+.+=+.+-..+..+|.
T Consensus 6 ~~kLq~~E~~N~~Le~~v~~le~~Le~s~~~q~~~~~Elk 45 (72)
T 3cve_A 6 HMKLQEVEIRNKDLEGQLSEMEQRLEKSQSEQDAFRSNLK 45 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555555444444444444444
No 315
>2b5u_A Colicin E3; high resolution colicin E3, ribosome inactivation, ribosome inhibitor, hydrolase; HET: CIT; 2.30A {Escherichia coli} SCOP: b.101.1.1 b.110.1.1 h.4.9.1 PDB: 1jch_A* 1ujw_B* 2ysu_B 1e44_B 2xfz_Y* 2xg1_Y*
Probab=31.32 E-value=2.4e+02 Score=27.34 Aligned_cols=62 Identities=16% Similarity=0.177 Sum_probs=40.9
Q ss_pred hhCCCCchh-hHHHHHHHHHHH-HHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 20 QVLPSDPFE-QLDVARKITSIA-ISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (207)
Q Consensus 20 svLP~DP~E-QLdlArkIts~A-~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~ 81 (207)
.+|+.+++- |.+=.-|--+-+ .+.=+...|+|..+.|+.|.+-+..++.+|+|....+.-|+
T Consensus 289 ~ilt~~elkqrqeee~r~~qew~~~hp~~~Aer~~e~a~ael~~a~k~~a~~~er~~~t~~~~~ 352 (551)
T 2b5u_A 289 DVLSPDQVKQRQDEENRRQQEWDATHPVEAAERNYERARAELNQANEDVARNQERQAKAVQVYN 352 (551)
T ss_dssp ECCCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecCCHHHHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555442 233333333333 23346778899999999999999999999999876666664
No 316
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=31.25 E-value=26 Score=29.63 Aligned_cols=33 Identities=9% Similarity=0.099 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 028596 86 QAQADKERLSKENEALTNTVRKLQRDVSKLEVF 118 (207)
Q Consensus 86 ~a~ee~~kL~kE~~sLa~TVKkL~RDvaKLE~F 118 (207)
...++|.+|.+|+..|......+..--+..+.+
T Consensus 23 ~l~~eN~~Lk~e~~~l~~~~~~~~~l~~En~rL 55 (255)
T 2j5u_A 23 NTYTENQHLKERLEELAQLESEVADLKKENKDL 55 (255)
T ss_dssp ---CTTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666655555444444333333333
No 317
>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2
Probab=31.19 E-value=1.8e+02 Score=22.45 Aligned_cols=32 Identities=19% Similarity=0.185 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 50 SEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (207)
Q Consensus 50 sE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~ 81 (207)
.++..|+.+...=+..+.+|+..++.+..+.+
T Consensus 45 ~qV~~L~~~~q~sE~~L~~Lqq~fsq~q~~vq 76 (112)
T 1x79_B 45 HQISALVLRAQASEILLEELQQGLSQAKRDVQ 76 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555555555555555444
No 318
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=31.05 E-value=1.3e+02 Score=23.87 Aligned_cols=48 Identities=23% Similarity=0.394 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhH
Q 028596 65 RIAELQSQIESIYSSLS--------DKLGQAQADKERLSKENEALTN-TVRKLQRDV 112 (207)
Q Consensus 65 ~i~eLq~rvs~Le~~L~--------~rL~~a~ee~~kL~kE~~sLa~-TVKkL~RDv 112 (207)
+|..|.+|+..+.+.+. ..+.+..+|+++|.+|..+|-+ +..+|+.+-
T Consensus 11 Eiq~L~drLD~~~rKlaaa~~rgd~~~i~qf~~E~~~l~k~I~~lk~~q~~~lske~ 67 (123)
T 2lf0_A 11 EIKRLSDRLDAIRHQQADLSLVEAADKYAELEKEKATLEAEIARLREVHSQKLSKEA 67 (123)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 44555555555555544 4556666666666666666643 233444433
No 319
>1nyh_A Regulatory protein SIR4; coiled-coil, transcription regulation, repressor, transcript repressor; 3.10A {Saccharomyces cerevisiae} SCOP: h.1.23.1
Probab=30.98 E-value=1e+02 Score=25.12 Aligned_cols=43 Identities=35% Similarity=0.479 Sum_probs=22.7
Q ss_pred hhhHHHHHHHHHH------HHHHhhhhhHHH-------HHHHHHHHHHHHHHHHHH
Q 028596 27 FEQLDVARKITSI------AISTRVSDLESE-------HSALRSQLAEKDSRIAEL 69 (207)
Q Consensus 27 ~EQLdlArkIts~------A~atRVs~LEsE-------~~~LR~~LaEKd~~i~eL 69 (207)
.-||.||-.|+.- ----|+..|... ...-|.++.|||+.|..|
T Consensus 97 ekqlavaneiirslsdevmrneiritslqgdltftkkclenarsqisekdakinkl 152 (166)
T 1nyh_A 97 EKQLAVANEIIRSLSDEVMRNEIRITSLQGDLTFTKKCLENARSQISEKDAKINKL 152 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHhhheeeeeeccchhhHHHHHHHHHhhhhhhhHHHHHH
Confidence 3478888766542 122244444444 234456666666666544
No 320
>2y7c_A Type-1 restriction enzyme ecoki specificity prote; transferase; 18.00A {Escherichia coli} PDB: 2y7h_A*
Probab=30.92 E-value=94 Score=26.08 Aligned_cols=21 Identities=14% Similarity=0.297 Sum_probs=15.3
Q ss_pred HHHhhhHHHHHHHHHHHHhhc
Q 028596 106 RKLQRDVSKLEVFRKTLVQSL 126 (207)
Q Consensus 106 KkL~RDvaKLE~FKk~LmqSL 126 (207)
.++.+-.+.|+.||+.||+-+
T Consensus 184 ~~~~~~~~~l~~~k~~ll~~~ 204 (464)
T 2y7c_A 184 ARFEQIPQILKRFRQAVLGGA 204 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345555677888999999864
No 321
>4adz_A CSOR; transcription, copper sensor; 1.70A {Streptomyces lividans}
Probab=30.76 E-value=2.1e+02 Score=22.93 Aligned_cols=43 Identities=16% Similarity=0.244 Sum_probs=32.6
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 38 SIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (207)
Q Consensus 38 s~A~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~ 81 (207)
...+-.|+.+.|.+++.+..-+.| ++--.++=.|+++...+|.
T Consensus 51 Kk~ll~RLkRIeGQvrGI~rMIEe-dr~C~DIL~QlaAVrsAL~ 93 (136)
T 4adz_A 51 KAEHLKRLRRIEGQIRGLQRMVDE-DVYCIDILTQVSASTKALQ 93 (136)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHH
Confidence 347889999999999999888864 5555555567777777776
No 322
>4e61_A Protein BIM1; EB1-like motif, coiled-coil, spindle orientation, mitosis, K phosphorylation, mitotic spindle, microtubules, cell cycle; 2.45A {Saccharomyces cerevisiae}
Probab=30.53 E-value=1.8e+02 Score=22.31 Aligned_cols=28 Identities=21% Similarity=0.421 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 53 SALRSQLAEKDSRIAELQSQIESIYSSL 80 (207)
Q Consensus 53 ~~LR~~LaEKd~~i~eLq~rvs~Le~~L 80 (207)
..|.+.|++..+.|.+|..++..|...+
T Consensus 7 ~al~~eL~~~~~ei~~L~~ei~eLk~~v 34 (106)
T 4e61_A 7 VAIQAELTKSQETIGSLNEEIEQYKGTV 34 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555554444444333
No 323
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=30.51 E-value=1.8e+02 Score=22.06 Aligned_cols=56 Identities=13% Similarity=0.179 Sum_probs=37.2
Q ss_pred CchhhHHHHHHHHHH--HHHHhhhhhHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 25 DPFEQLDVARKITSI--AISTRVSDLESEH---------SALRSQLAEKDSRIAELQSQIESIYSSL 80 (207)
Q Consensus 25 DP~EQLdlArkIts~--A~atRVs~LEsE~---------~~LR~~LaEKd~~i~eLq~rvs~Le~~L 80 (207)
||-|=-+|...|.++ -|-+-|+.|+.-+ ..||.+|.+..+.+.+|=+..+..=..|
T Consensus 8 d~~ef~~l~~~is~~I~~In~~vs~l~r~v~~LGT~kDt~~LR~kl~~~~~~t~~l~k~ts~~lk~L 74 (130)
T 2dnx_A 8 QLRDFSSIIQTCSGNIQRISQATAQIKNLMSQLGTKQDSSKLQENLQQLQHSTNQLAKETNELLKEL 74 (130)
T ss_dssp CSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334577777776 5667788888875 6678888877777777766555444444
No 324
>1no4_A Late, head morphogenesis protein; coiled-coil, viral protein; 2.20A {Bacillus phage PHI29} SCOP: h.1.24.1 PDB: 1noh_A
Probab=30.31 E-value=1.8e+02 Score=22.00 Aligned_cols=51 Identities=22% Similarity=0.332 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 028596 60 AEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSK 114 (207)
Q Consensus 60 aEKd~~i~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDvaK 114 (207)
.|+.+.+++|+.-+.+.=.++. ...---.||.-||+.|+-.--||-|+|--
T Consensus 22 serte~lqqlr~~y~s~~se~~----dlt~s~ekl~ae~~dlivsnsklfrqig~ 72 (97)
T 1no4_A 22 SERTEALQQLRVNYGSFVSEYN----DLTKSHEKLAAEKDDLIVSNSKLFRQIGL 72 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHh----hhhHHHHHHHhccCCeeeecHHHHHHhcc
Confidence 3666777777777766666665 55566678999999999888888887753
No 325
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=30.24 E-value=1.9e+02 Score=22.39 Aligned_cols=20 Identities=5% Similarity=0.197 Sum_probs=10.7
Q ss_pred HHHHhhhhhHHHHHHHHHHH
Q 028596 40 AISTRVSDLESEHSALRSQL 59 (207)
Q Consensus 40 A~atRVs~LEsE~~~LR~~L 59 (207)
.|-..|..+..++..|+..+
T Consensus 40 ~F~~~v~~I~~~i~~i~~~v 59 (180)
T 1s94_A 40 EFFEQVEEIRAMIDKISDNV 59 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555444
No 326
>1avy_A Fibritin, gpwac M; bacteriophage T4, structural protein, chaperone, bacteriopha assembly, protein folding; 1.85A {Enterobacteria phage T4} SCOP: h.1.17.1
Probab=30.05 E-value=1.1e+02 Score=22.52 Aligned_cols=18 Identities=11% Similarity=0.494 Sum_probs=10.5
Q ss_pred HhhhhhHHHHHHHHHHHH
Q 028596 43 TRVSDLESEHSALRSQLA 60 (207)
Q Consensus 43 tRVs~LEsE~~~LR~~La 60 (207)
..|..+|..|..++....
T Consensus 8 nsVk~~eT~iaa~~~ev~ 25 (74)
T 1avy_A 8 NKIKAIETDIASVRQEVN 25 (74)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred chhcccccchhhhheeec
Confidence 345666666666665543
No 327
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=30.03 E-value=1.6e+02 Score=21.43 Aligned_cols=18 Identities=22% Similarity=0.445 Sum_probs=8.9
Q ss_pred HHhhhhhHHHHHHHHHHH
Q 028596 42 STRVSDLESEHSALRSQL 59 (207)
Q Consensus 42 atRVs~LEsE~~~LR~~L 59 (207)
-.||.+||+-+..|..++
T Consensus 6 EEKv~~LE~sld~LQTrf 23 (74)
T 3swf_A 6 EEKVTRMESSVDLLQTRF 23 (74)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345555555555444433
No 328
>3q0x_A Centriole protein; centrosome protein, coiled coil mediated dimer, structural P; 3.02A {Chlamydomonas reinhardtii}
Probab=30.02 E-value=1.2e+02 Score=25.84 Aligned_cols=52 Identities=19% Similarity=0.344 Sum_probs=0.0
Q ss_pred HHHHHHHH-----HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH
Q 028596 32 VARKITSI-----AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS--DK 83 (207)
Q Consensus 32 lArkIts~-----A~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~--~r 83 (207)
||.|+..+ .+-.++++...|...++.+|++=.+..+++++.+..+--+.| +|
T Consensus 169 La~R~~~lK~kl~~l~~~L~~~~~e~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (228)
T 3q0x_A 169 LAFRLSEVKGTCHDLSDDLSRTRDDRDSMVAQLAQCRQQLAQLREQYDKHLLEVQAQAK 227 (228)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeeecccC
No 329
>2xv5_A Lamin-A/C; structural protein, intermediate filaments, nuclear membrane LEFT-handed coiled coil, right-handed coiled coil; HET: MSE; 2.40A {Homo sapiens}
Probab=29.86 E-value=1.5e+02 Score=21.07 Aligned_cols=26 Identities=31% Similarity=0.486 Sum_probs=10.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 48 LESEHSALRSQLAEKDSRIAELQSQI 73 (207)
Q Consensus 48 LEsE~~~LR~~LaEKd~~i~eLq~rv 73 (207)
|+.|...++..+.+.+..+..++..+
T Consensus 3 l~~e~~~~~~~i~~lE~eL~~~r~e~ 28 (74)
T 2xv5_A 3 SARERDTSRRLLAEKEREMAEMRARM 28 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444443333
No 330
>2qm4_A Non-homologous END-joining factor 1; XRCC4 like factor, homodimer, beta-sandwich, coiled-coil, recombination; HET: MSE; 2.30A {Homo sapiens} PDB: 3sr2_C* 2r9a_A 3q4f_E* 3rwr_D*
Probab=29.67 E-value=55 Score=27.91 Aligned_cols=39 Identities=21% Similarity=0.228 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 32 VARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQS 71 (207)
Q Consensus 32 lArkIts~A~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~ 71 (207)
|.+.|+---+ .=+..|+.++..|-..|.+||.+|.+++.
T Consensus 133 l~~~LilPLl-~~~~~l~~q~~~L~~lL~~KD~eI~~y~~ 171 (235)
T 2qm4_A 133 VSQHLIRPLM-GMSLALQCQVRELATLLHMKDLEIQDYQE 171 (235)
T ss_dssp HHHHTHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444443333 33568899999999999999999998653
No 331
>1rtm_1 Mannose-binding protein-A; lectin; 1.80A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1 PDB: 1kwu_A* 1kwv_A* 1kwt_A* 1kwx_A* 1kwy_A* 1kx1_A* 1kww_A 1kwz_A* 1kx0_A* 3kmb_1* 1kmb_1* 2kmb_1* 4kmb_1* 1afb_1* 1afa_1* 1afd_1 1bch_1* 1bcj_1* 1fif_A 1fih_A*
Probab=29.36 E-value=33 Score=25.14 Aligned_cols=19 Identities=32% Similarity=0.646 Sum_probs=9.7
Q ss_pred HHHhhhhhHHHHHHHHHHH
Q 028596 41 ISTRVSDLESEHSALRSQL 59 (207)
Q Consensus 41 ~atRVs~LEsE~~~LR~~L 59 (207)
+..|+..||.++..|..+|
T Consensus 2 ~~~~l~~l~~~~~~l~~~l 20 (149)
T 1rtm_1 2 IEVKLANMEAEINTLKSKL 20 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455555555555444443
No 332
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=29.28 E-value=1.8e+02 Score=21.66 Aligned_cols=23 Identities=22% Similarity=0.198 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 028596 58 QLAEKDSRIAELQSQIESIYSSL 80 (207)
Q Consensus 58 ~LaEKd~~i~eLq~rvs~Le~~L 80 (207)
.|.+-=..+..|.+++..|+.++
T Consensus 40 AL~eaL~EN~~Lh~~ie~l~eEi 62 (83)
T 1uii_A 40 ALYEALKENEKLHKEIEQKDNEI 62 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555444444
No 333
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=29.13 E-value=1.9e+02 Score=21.90 Aligned_cols=18 Identities=22% Similarity=0.375 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 028596 63 DSRIAELQSQIESIYSSL 80 (207)
Q Consensus 63 d~~i~eLq~rvs~Le~~L 80 (207)
..+|.+|++++..||..-
T Consensus 53 ~~EI~~L~~eI~~LE~iq 70 (96)
T 1t3j_A 53 EEEIARLSKEIDQLEKMQ 70 (96)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345555555555555443
No 334
>2d4y_A HAP1, flagellar HOOK-associated protein 1; multi-domain protein, alpha-helical bundle, complex all- beta folds, structural protein; 2.10A {Salmonella typhimurium}
Probab=29.05 E-value=1.9e+02 Score=25.86 Aligned_cols=58 Identities=16% Similarity=0.189 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 028596 55 LRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKL 115 (207)
Q Consensus 55 LR~~LaEKd~~i~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDvaKL 115 (207)
.|+.+.++.+.+ -.++..+...|+.--..+.++...-.++-+.|..++-+||+++.+.
T Consensus 65 ~R~~vl~~a~~L---a~~~n~~~~~L~~~~~~~n~~i~~~V~~iN~l~~qIa~LN~qI~~~ 122 (463)
T 2d4y_A 65 ARQALIGKAEGL---VNQFKTTDQYLRDQDKQVNIAIGSSVAQINNYAKQIANLNDQISRM 122 (463)
T ss_dssp HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455555444332 2333333333332223444444455555555555666666665543
No 335
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=28.91 E-value=56 Score=24.41 Aligned_cols=17 Identities=35% Similarity=0.442 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHHh
Q 028596 93 RLSKENEALTNTVRKLQ 109 (207)
Q Consensus 93 kL~kE~~sLa~TVKkL~ 109 (207)
.|.+|...|...++.|.
T Consensus 18 ~l~~~i~~lkeel~~L~ 34 (109)
T 2wg5_A 18 ELLSKNYHLENEVARLR 34 (109)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 33333333333344433
No 336
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=28.76 E-value=3.6e+02 Score=25.15 Aligned_cols=33 Identities=12% Similarity=0.132 Sum_probs=23.4
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhcccccC
Q 028596 99 EALTNTVRKLQRDVSKLEVFRKTLVQSLKDDED 131 (207)
Q Consensus 99 ~sLa~TVKkL~RDvaKLE~FKk~LmqSLq~D~~ 131 (207)
..|...++.|..++..||.--+.+-..|++---
T Consensus 74 ~~l~~~~~~l~~~i~~le~~~~~~~~~~~~~l~ 106 (485)
T 3qne_A 74 KDLIAEKEKLSNEKKEIIEKEAEADKNLRSKIN 106 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457777788888888888777777666665433
No 337
>3qwe_A GMIP, GEM-interacting protein; structural genomics consortium, SGC, protein binding; 2.40A {Homo sapiens}
Probab=28.67 E-value=2.9e+02 Score=24.03 Aligned_cols=64 Identities=19% Similarity=0.229 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Q 028596 59 LAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLVQ 124 (207)
Q Consensus 59 LaEKd~~i~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDvaKLE~FKk~Lmq 124 (207)
+..+.++-.+++.|+..++..+..+...+......|...+-.....++.|-.+.. .++|...|.
T Consensus 172 lek~r~~EEea~~K~eeAd~~Y~~~V~~a~~~r~eL~~tk~~~v~~Lr~LI~e~D--~~lk~~t~~ 235 (279)
T 3qwe_A 172 QERRRRSREEAQAKAQEAEALYQACVREANARQQDLEIAKQRIVSHVRKLVFQGD--EVLRRVTLS 235 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
T ss_pred hhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence 4446677788999999999999988888888888887776666666666655443 245554443
No 338
>3a7o_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.50A {Saccharomyces cerevisiae}
Probab=28.62 E-value=1.7e+02 Score=21.40 Aligned_cols=43 Identities=19% Similarity=0.169 Sum_probs=31.0
Q ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 37 TSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSS 79 (207)
Q Consensus 37 ts~A~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~ 79 (207)
+-.++..-...=|.||++|+..++=|..-..-|.+.+-++.-+
T Consensus 19 ~l~~Lr~eL~~Ke~eI~~L~e~i~lk~kd~ErLNDEiislNIE 61 (75)
T 3a7o_A 19 TLAILQKELKSKEQEIRRLKEVIALKNKNTERLNDELISGTIE 61 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHhhHHHHHhHHH
Confidence 3345556666668899999999988887777777777665544
No 339
>3t97_B Nuclear pore complex protein NUP54; nucleoporin, coiled-coil, nuclear pore complex, central TRAN channel, alpha helical proteins, triple helix; 2.80A {Rattus norvegicus}
Probab=28.61 E-value=1.4e+02 Score=21.28 Aligned_cols=36 Identities=17% Similarity=0.289 Sum_probs=27.5
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 42 STRVSDLESEHSALRSQLAEKDSRIAELQSQIESIY 77 (207)
Q Consensus 42 atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le 77 (207)
..|+..++.|+..||.+.+.-...|.+.+.|+..|-
T Consensus 9 ~~~Ld~i~~el~eLq~~~~~~~aki~e~krkl~eLs 44 (65)
T 3t97_B 9 QTRLDIISEDISELQKNQTTTMAKIAQYKRKLMDLS 44 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 456777788888888888888888888877766544
No 340
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=28.40 E-value=57 Score=21.49 Aligned_cols=16 Identities=13% Similarity=0.347 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHH
Q 028596 65 RIAELQSQIESIYSSL 80 (207)
Q Consensus 65 ~i~eLq~rvs~Le~~L 80 (207)
.|.+|++++..|+..|
T Consensus 50 ~~~~Le~ri~~Le~~l 65 (72)
T 2er8_A 50 RNEAIEKRFKELTRTL 65 (72)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444555555444
No 341
>1urq_A M-tomosyn isoform; transport protein, tomosyn-snare complex, exocytosis, four helical bundle, coiled coil; 2.0A {Rattus norvegicus} SCOP: h.1.15.1
Probab=28.20 E-value=1.5e+02 Score=20.42 Aligned_cols=42 Identities=19% Similarity=0.332 Sum_probs=29.0
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (207)
Q Consensus 40 A~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~ 81 (207)
.+...|+..-+....-++++.|+.+.+..|++|-+.|...=+
T Consensus 8 ~v~~qv~ev~~iM~~ni~kvlERGekL~~L~dkT~~L~~~A~ 49 (63)
T 1urq_A 8 GVKGAASGVVGELARARLALDERGQKLSDLEERTAAMMSSAD 49 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666777778888888888888877766655443
No 342
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=28.11 E-value=1.3e+02 Score=19.92 Aligned_cols=17 Identities=24% Similarity=0.440 Sum_probs=8.6
Q ss_pred HhhhhhHHHHHHHHHHH
Q 028596 43 TRVSDLESEHSALRSQL 59 (207)
Q Consensus 43 tRVs~LEsE~~~LR~~L 59 (207)
.||.+||+-+..|..++
T Consensus 5 ekv~~Le~~ld~LqTr~ 21 (46)
T 3swy_A 5 EKVEQLGSSLDTLQTRF 21 (46)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 35555555555444443
No 343
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A
Probab=27.67 E-value=77 Score=24.97 Aligned_cols=13 Identities=31% Similarity=0.217 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHH
Q 028596 68 ELQSQIESIYSSL 80 (207)
Q Consensus 68 eLq~rvs~Le~~L 80 (207)
.|+.|+..++..+
T Consensus 4 ~l~~~~~~~~~~~ 16 (192)
T 2gkw_A 4 LLESQLSRHDQML 16 (192)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444444
No 344
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=27.58 E-value=1.3e+02 Score=27.07 Aligned_cols=29 Identities=24% Similarity=0.486 Sum_probs=14.8
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhhccc
Q 028596 100 ALTNTVRKLQRDVSKLEVFRKTLVQSLKD 128 (207)
Q Consensus 100 sLa~TVKkL~RDvaKLE~FKk~LmqSLq~ 128 (207)
.|...++.|..++..||.--+.+-..|++
T Consensus 72 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (425)
T 2dq3_A 72 EIQNRVKELKEEIDRLEEELRKVEEELKN 100 (425)
T ss_dssp TSTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444555555555555555555444444
No 345
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=27.46 E-value=1.8e+02 Score=21.27 Aligned_cols=75 Identities=20% Similarity=0.206 Sum_probs=39.9
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHH---H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 028596 42 STRVSDLESEHSALRSQLAEKDSRIAEL---Q---SQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKL 115 (207)
Q Consensus 42 atRVs~LEsE~~~LR~~LaEKd~~i~eL---q---~rvs~Le~~L~~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDvaKL 115 (207)
+.-....|.+...|...+..|-..|..+ + ..+..++..| .+|.+=..++.-|..++-.+.|. .=.+||
T Consensus 14 SelFe~YE~df~~l~~~i~~kl~~i~~~~~~e~rk~~i~~ie~~l----dEA~eLl~qMelE~r~~p~s~R~--~~~~kl 87 (102)
T 2qyw_A 14 SEHFEKLHEIFRGLLEDLQGVPERLLGTAGTEEKKKLVRDFDEKQ----QEANETLAEMEEELRYAPLTFRN--PMMSKL 87 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHTSCHHHHH--HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhCCHHHHH--HHHHHH
Confidence 4555566666666666665555555332 2 2223333333 36666666666666666555544 334566
Q ss_pred HHHHHHH
Q 028596 116 EVFRKTL 122 (207)
Q Consensus 116 E~FKk~L 122 (207)
..+|+.|
T Consensus 88 r~Yk~dL 94 (102)
T 2qyw_A 88 RNYRKDL 94 (102)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666655
No 346
>1bf5_A Signal transducer and activator of transcription 1-alpha/beta; complex (SH2 domain/DNA), SH2 domain, transcription factor; HET: DNA PTR; 2.90A {Homo sapiens} SCOP: a.47.1.1 b.2.5.5 d.93.1.1
Probab=27.34 E-value=4.3e+02 Score=25.52 Aligned_cols=38 Identities=11% Similarity=0.167 Sum_probs=32.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 44 RVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (207)
Q Consensus 44 RVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~ 81 (207)
|-..+|..+..||....+=++.|..|++.-..++..++
T Consensus 3 ~~~~i~~~~~~l~~~~q~~e~~~k~Le~~Qe~f~~~y~ 40 (575)
T 1bf5_A 3 KQKELDSKVRNVKDKVMCIEHEIKSLEDLQDEYDFKCK 40 (575)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 55678899999999999999999888888777777765
No 347
>1zbt_A RF-1, peptide chain release factor 1; peptide chain release factor 1 (RF-1), structural joint center for structural genomics, JCSG; 2.34A {Streptococcus mutans}
Probab=26.96 E-value=1.1e+02 Score=28.12 Aligned_cols=23 Identities=13% Similarity=0.131 Sum_probs=15.0
Q ss_pred HHHHHHHHHhhhHHHHHH-HHHHH
Q 028596 100 ALTNTVRKLQRDVSKLEV-FRKTL 122 (207)
Q Consensus 100 sLa~TVKkL~RDvaKLE~-FKk~L 122 (207)
.+...++.|...+.+||. ++.-|
T Consensus 91 ~a~~e~~~l~~~l~~le~~l~~lL 114 (371)
T 1zbt_A 91 MAKEELKNSKVAKEEYEEKLRFLL 114 (371)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345567788888888875 45433
No 348
>1flk_A TNF receptor associated factor 3; TNF signaling, TRAF3, CD40-binding protein, apoptosis; 2.80A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1fll_A
Probab=26.88 E-value=65 Score=26.21 Aligned_cols=8 Identities=13% Similarity=0.575 Sum_probs=3.7
Q ss_pred HHHHHHHH
Q 028596 114 KLEVFRKT 121 (207)
Q Consensus 114 KLE~FKk~ 121 (207)
++++|-+.
T Consensus 81 kI~nfS~~ 88 (228)
T 1flk_A 81 KIRDYKRR 88 (228)
T ss_dssp EEECHHHH
T ss_pred EECCHHHH
Confidence 34555443
No 349
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=26.79 E-value=48 Score=24.70 Aligned_cols=20 Identities=15% Similarity=0.436 Sum_probs=0.0
Q ss_pred HHHHHhhhhhHHHHHHHHHH
Q 028596 39 IAISTRVSDLESEHSALRSQ 58 (207)
Q Consensus 39 ~A~atRVs~LEsE~~~LR~~ 58 (207)
||+|.||..|-.++..++.+
T Consensus 61 iaLAa~l~~lH~~V~~~Ke~ 80 (93)
T 3t98_B 61 VALAAQLQSIHENVKVLKEQ 80 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
No 350
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=26.72 E-value=2.4e+02 Score=22.37 Aligned_cols=23 Identities=17% Similarity=0.332 Sum_probs=14.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHH
Q 028596 47 DLESEHSALRSQLAEKDSRIAEL 69 (207)
Q Consensus 47 ~LEsE~~~LR~~LaEKd~~i~eL 69 (207)
.+...+..|-..|..|.+.|..|
T Consensus 54 ~f~~~~~ela~dli~kakqIe~L 76 (151)
T 1yke_B 54 EFSNTIDELSTDIILKTRQINKL 76 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555666767777777777554
No 351
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=26.59 E-value=2.1e+02 Score=23.21 Aligned_cols=68 Identities=15% Similarity=0.133 Sum_probs=0.0
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRK 107 (207)
Q Consensus 40 A~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~~sLa~TVKk 107 (207)
.+..=..+.-.+...||+++..|...+..|-..=+-=+.++.+...+..+-..+|..++-...+.++|
T Consensus 75 ql~~I~~e~r~~~~~Lr~ql~akr~EL~aL~~a~~~DeakI~aL~~Ei~~Lr~qL~~~R~k~~~em~K 142 (175)
T 3lay_A 75 TAQKIYDDYYTQTSALRQQLISKRYEYNALLTASSPDTAKINAVAKEMESLGQKLDEQRVKRDVAMAQ 142 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 352
>3tso_C RAB11 family-interacting protein 2; RAS GTPase fold (RAB25), vesicle trafficking, endosome, PROT transport; HET: GNP; 1.80A {Homo sapiens} PDB: 2k6s_A
Probab=26.42 E-value=1.1e+02 Score=22.38 Aligned_cols=29 Identities=28% Similarity=0.399 Sum_probs=22.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 48 LESEHSALRSQLAEKDSRIAELQSQIESI 76 (207)
Q Consensus 48 LEsE~~~LR~~LaEKd~~i~eLq~rvs~L 76 (207)
|-..+-.++..|..|+.+|.+||+=+..|
T Consensus 19 Li~l~lk~~~~l~~k~~~v~eLEdYID~L 47 (75)
T 3tso_C 19 VLQELVKHKELLRRKDTHIRELEDYIDNL 47 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44456677778899999999998766654
No 353
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=26.42 E-value=93 Score=26.27 Aligned_cols=22 Identities=45% Similarity=0.620 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 028596 82 DKLGQAQADKERLSKENEALTN 103 (207)
Q Consensus 82 ~rL~~a~ee~~kL~kE~~sLa~ 103 (207)
++......+|..|++||+.|..
T Consensus 161 ~~i~~L~a~N~hLqkENeRL~~ 182 (186)
T 3q4f_C 161 DTIAENQAKNEHLQKENERLLR 182 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 6677777888888888888864
No 354
>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=26.03 E-value=1.4e+02 Score=19.38 Aligned_cols=23 Identities=13% Similarity=0.187 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Q 028596 87 AQADKERLSKENEALTNTVRKLQ 109 (207)
Q Consensus 87 a~ee~~kL~kE~~sLa~TVKkL~ 109 (207)
+.....++.++-......+.+++
T Consensus 31 ~k~~~~~~~~~l~~~~~~I~~~k 53 (60)
T 3htk_A 31 AKEKINEIFEKLNTIRDEVIKKK 53 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333444443
No 355
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=25.88 E-value=2.8e+02 Score=22.79 Aligned_cols=47 Identities=17% Similarity=0.229 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 028596 71 SQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEV 117 (207)
Q Consensus 71 ~rvs~Le~~L~~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDvaKLE~ 117 (207)
.+-+.|+.+|..+=........+|..+...|......|.+.+..|+.
T Consensus 38 ~~q~~lq~sl~~~~~~l~~g~~~L~~~~~~Le~~~~~L~~~i~~l~~ 84 (174)
T 2p22_A 38 TRQTVMQESIARFHEIIAIDKNHLRAVEQAIEQTMHSLNAQIDVLTA 84 (174)
T ss_dssp GGGTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444333344556778888889999999999999888888
No 356
>3pe0_A Plectin; cytoskeleton, plakin, spectrin repeat, SH3, structural prote intermediate filament, crosslinking; 2.95A {Homo sapiens}
Probab=25.59 E-value=2.9e+02 Score=23.22 Aligned_cols=49 Identities=14% Similarity=0.041 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 028596 67 AELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRK 120 (207)
Q Consensus 67 ~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDvaKLE~FKk 120 (207)
..+++|+..|....+.-+..+..+...|.. +..+....+|++.+++.-+
T Consensus 83 ~~I~~r~~~L~~~W~~L~~l~~~R~~~L~~-----a~~~~qF~~da~e~e~Wl~ 131 (283)
T 3pe0_A 83 PTVESFQAALQTQWSWMLQLCCCIEAHLKE-----NAAYFQFFSDVREAEGQLQ 131 (283)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH
Confidence 345556555555554222223333333332 2234568889988888543
No 357
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=25.59 E-value=2.8e+02 Score=22.81 Aligned_cols=24 Identities=8% Similarity=0.073 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 58 QLAEKDSRIAELQSQIESIYSSLS 81 (207)
Q Consensus 58 ~LaEKd~~i~eLq~rvs~Le~~L~ 81 (207)
++.--+.++.+|++|+..++..|+
T Consensus 70 n~~sA~~~~d~lekKl~~aq~kL~ 93 (158)
T 3tul_A 70 KTDTAKSVYDAATKKLTQAQNKLQ 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccchHHHHHHHHHHHHHHHHHHHh
Confidence 334557778888888888888886
No 358
>3s9g_A Protein hexim1; cyclin T-binding domain (TBD), cyclin T1/P-TEFB/7SK snRNA, N transcription; 2.10A {Homo sapiens} PDB: 2gd7_A
Probab=25.53 E-value=2.3e+02 Score=21.86 Aligned_cols=41 Identities=24% Similarity=0.417 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 028596 83 KLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTLV 123 (207)
Q Consensus 83 rL~~a~ee~~kL~kE~~sLa~TVKkL~RDvaKLE~FKk~Lm 123 (207)
++..+.+++..|+......-..|..|...|.+|.+=-..|.
T Consensus 45 ~~s~le~e~~rlr~~~~~~~~~v~eLe~everL~~ENq~L~ 85 (104)
T 3s9g_A 45 SLSRMEDENNRLRLESKRLDARVRELELELDRLRAENLQLL 85 (104)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHH
Confidence 33366666666666666666677777776666655444333
No 359
>3a1q_C Ubiquitin interaction motif-containing protein 1; protein complex, cytoplasm, nucleus, phosphoprotein, UBL conjugation, transcription regulation; 2.20A {Mus musculus}
Probab=25.45 E-value=1.5e+02 Score=19.73 Aligned_cols=9 Identities=44% Similarity=0.346 Sum_probs=5.3
Q ss_pred hhhHHHHHH
Q 028596 27 FEQLDVARK 35 (207)
Q Consensus 27 ~EQLdlArk 35 (207)
.|||.||-|
T Consensus 7 EEq~ALA~r 15 (45)
T 3a1q_C 7 EEQFALALK 15 (45)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 467766653
No 360
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=25.44 E-value=2.2e+02 Score=21.59 Aligned_cols=13 Identities=15% Similarity=-0.026 Sum_probs=7.2
Q ss_pred hhhHHHHHHHHHH
Q 028596 27 FEQLDVARKITSI 39 (207)
Q Consensus 27 ~EQLdlArkIts~ 39 (207)
.+++...+.|...
T Consensus 43 ~~dl~~l~~I~~l 55 (142)
T 3gp4_A 43 AEDLRWILFTRQM 55 (142)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4566666655443
No 361
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=25.20 E-value=2.5e+02 Score=22.00 Aligned_cols=24 Identities=29% Similarity=0.397 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHHH
Q 028596 66 IAELQSQIESIYSSLS---DKLGQAQA 89 (207)
Q Consensus 66 i~eLq~rvs~Le~~L~---~rL~~a~e 89 (207)
|.+||+-+...|.+|. -||+.|.+
T Consensus 24 ieeLq~Ei~~~E~QL~~ArQKLkdA~~ 50 (113)
T 4fi5_A 24 MEELQREINAHEGQLVIARQKVRDAEK 50 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777777777776 45555544
No 362
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2
Probab=24.72 E-value=1.4e+02 Score=24.95 Aligned_cols=41 Identities=17% Similarity=0.375 Sum_probs=23.0
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSL 80 (207)
Q Consensus 40 A~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L 80 (207)
-|-.|+..||.|-=.|-.++...+-.|.+|..||+.|..-+
T Consensus 69 ELh~~I~~LEeEKYDlE~kvkkqdyEI~dL~~rV~DLrGKF 109 (180)
T 1j1e_C 69 QLHARVDKVDEERYDIEAKVTKNITEIADLTQKIFDLRGKF 109 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHhhHHHHHHhcchhHHHHHHHHHHHHhcc
Confidence 34455566666666666666666666666666666554433
No 363
>3rkg_A Magnesium transporter MRS2, mitochondrial; matrix located domain, hydrophobic GATE magnesium binding site, metal transport; 1.28A {Saccharomyces cerevisiae}
Probab=24.70 E-value=2.8e+02 Score=23.83 Aligned_cols=75 Identities=17% Similarity=0.209 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 028596 34 RKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVS 113 (207)
Q Consensus 34 rkIts~A~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDva 113 (207)
+|..--++.+-++.||+|...++..... .+.+|..+++. ..|. .|-..-|+|+.=.+
T Consensus 125 fraLEa~L~~v~~~Le~e~~~l~~~~~~---~L~~L~~~i~~--~~L~------------------~Ll~~~k~L~~~~~ 181 (261)
T 3rkg_A 125 HRALESIFINVMSALETDFKLHSQICIQ---ILNDLENEVNR--LKLR------------------HLLIKSKDLTLFYQ 181 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHSCCH--HHHH------------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhcCCH--HHHH------------------HHHHHhHHHHHHHH
Q ss_pred HHHHHHHHHHhhcccccC
Q 028596 114 KLEVFRKTLVQSLKDDED 131 (207)
Q Consensus 114 KLE~FKk~LmqSLq~D~~ 131 (207)
|...|+..|..=|.+|++
T Consensus 182 kv~~vr~~leelLddDeD 199 (261)
T 3rkg_A 182 KTLLIRDLLDELLENDDD 199 (261)
T ss_dssp HHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHcCHHH
No 364
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=24.44 E-value=3.1e+02 Score=22.82 Aligned_cols=88 Identities=16% Similarity=0.239 Sum_probs=54.3
Q ss_pred CCchhh----HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q 028596 24 SDPFEQ----LDVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLG-QAQADKERLSKEN 98 (207)
Q Consensus 24 ~DP~EQ----LdlArkIts~A~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~~rL~-~a~ee~~kL~kE~ 98 (207)
+||++= ||-+.-.+ .++..++..|..|..+|.....+=...+.++-.--..+|.+|-.|.. ..++.+.|+.+-.
T Consensus 117 ~d~~e~i~elfd~~~~~~-~~~~~~~~~L~~e~~~l~~~~~~l~~qlE~~v~~K~~~E~~L~~KF~~lLNeKK~KIR~lq 195 (213)
T 1ik9_A 117 ENPAEVIRELIAYALDTI-AENQAKNEHLQKENERLLRDWNDVQGRFEKAVSAKEALETDLYKRFILVLNEKKTKIRSLH 195 (213)
T ss_dssp SCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 566642 45444332 24555666666666666666655555556666666666777764443 3456667777777
Q ss_pred HHHHHHHHHHhhhH
Q 028596 99 EALTNTVRKLQRDV 112 (207)
Q Consensus 99 ~sLa~TVKkL~RDv 112 (207)
+.|.+.++.+..+.
T Consensus 196 ~~Ll~~~~~~~~~~ 209 (213)
T 1ik9_A 196 NKLLNAAQEREKDI 209 (213)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhh
Confidence 78888888877654
No 365
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=24.20 E-value=2.1e+02 Score=20.75 Aligned_cols=52 Identities=12% Similarity=0.135 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHH----HHHHHHHHHHHH-HHHHHHHHHH
Q 028596 52 HSALRSQLAEKDSRIAELQSQIESI--YSSLS----DKLGQAQADKER-LSKENEALTN 103 (207)
Q Consensus 52 ~~~LR~~LaEKd~~i~eLq~rvs~L--e~~L~----~rL~~a~ee~~k-L~kE~~sLa~ 103 (207)
+...-..+.|-+..|..|+--+..+ ..+.. .||+.-..+..+ |.++-..|.+
T Consensus 36 i~~ie~~ldEA~ell~qMelE~~~~~~p~~~R~~~~~klr~Yk~dl~~~lk~~lk~l~d 94 (97)
T 3onj_A 36 LKHVEQQQDELFDLLDQMDVEVNNSIGDASERATYKAKLREWKKTIQSDIKRPLQSLVD 94 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
No 366
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=24.07 E-value=2.5e+02 Score=21.64 Aligned_cols=38 Identities=13% Similarity=0.133 Sum_probs=17.1
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 40 AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIY 77 (207)
Q Consensus 40 A~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le 77 (207)
.+...-..|..+...|...+........+|+.++..|+
T Consensus 26 ~l~~eN~~Lk~e~e~l~~~~~~~~~~~~eL~~~~~~Le 63 (155)
T 2oto_A 26 RLRHENKDLKARLENAMEVAGRDFKRAEELEKAKQALE 63 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 44444444555555554444443333444444444443
No 367
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=23.76 E-value=72 Score=26.32 Aligned_cols=22 Identities=23% Similarity=0.332 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 028596 52 HSALRSQLAEKDSRIAELQSQI 73 (207)
Q Consensus 52 ~~~LR~~LaEKd~~i~eLq~rv 73 (207)
+..|..++..|.+.+.+||-++
T Consensus 150 v~~L~~~ie~kn~~l~ele~k~ 171 (172)
T 4e8u_A 150 VQNLRQLVEEKKKDMKEIEELC 171 (172)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 5556677777777777777654
No 368
>3etw_A Adhesin A; antiparallel helix-loop-helix, leucine chain, cell adhesin, cell adhesion; 2.00A {Fusobacterium nucleatum} PDB: 3ety_A 3etx_A 3etz_A 2gl2_A
Probab=23.72 E-value=2.6e+02 Score=21.76 Aligned_cols=20 Identities=20% Similarity=0.321 Sum_probs=15.1
Q ss_pred HHHHHhhhhhHHHHHHHHHH
Q 028596 39 IAISTRVSDLESEHSALRSQ 58 (207)
Q Consensus 39 ~A~atRVs~LEsE~~~LR~~ 58 (207)
..|-++...||.|...|...
T Consensus 5 ~~i~~~l~~Leae~q~L~~~ 24 (119)
T 3etw_A 5 ASLVGELQALDAEYQNLANQ 24 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 45677888888888887654
No 369
>3m0d_C TNF receptor-associated factor 1; trimeric helix coiled coiled, acetylation, alternative splic apoptosis, coiled coil, cytoplasm; 2.80A {Homo sapiens}
Probab=23.70 E-value=1.8e+02 Score=19.83 Aligned_cols=14 Identities=21% Similarity=0.373 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHHH
Q 028596 65 RIAELQSQIESIYS 78 (207)
Q Consensus 65 ~i~eLq~rvs~Le~ 78 (207)
.+.+|+.++..+|.
T Consensus 7 ~~~~le~kl~~lEn 20 (65)
T 3m0d_C 7 LLAELEGKLRVFEN 20 (65)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444444333
No 370
>3g0m_A Cysteine desulfuration protein SUFE; YNHA, csgid, national I of allergy and infectious diseases, niaid, hydrolase, struc genomics; 1.76A {Salmonella typhimurium LT2} SCOP: d.224.1.1 PDB: 1mzg_A
Probab=23.70 E-value=18 Score=28.58 Aligned_cols=45 Identities=20% Similarity=0.296 Sum_probs=35.3
Q ss_pred CCCChHHHHhhCCCCchhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Q 028596 11 TFDLPEEVLQVLPSDPFEQLDVARKITSIAISTRVSDLESEHSALRSQL 59 (207)
Q Consensus 11 ~f~Lp~eilsvLP~DP~EQLdlArkIts~A~atRVs~LEsE~~~LR~~L 59 (207)
+-.=|+||+++=|.+=|++|.|..-++ .+|.+.|.+=+.++|...
T Consensus 93 ~G~tp~eIl~~d~~~f~~~lGL~~~LS----psR~nGl~am~~~ik~~a 137 (141)
T 3g0m_A 93 HQMTAQDIVHFDVRPWFEKMALAQHLT----PSRSQGLEAMIRAIRAKA 137 (141)
T ss_dssp TTCBHHHHHHCCCHHHHHHHTCGGGSC----HHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHhCCHHHHHHHcCchhhcC----chHHHHHHHHHHHHHHHH
Confidence 345699999987777889999987654 578888888888887754
No 371
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=23.51 E-value=1.6e+02 Score=19.08 Aligned_cols=12 Identities=42% Similarity=0.626 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHH
Q 028596 86 QAQADKERLSKE 97 (207)
Q Consensus 86 ~a~ee~~kL~kE 97 (207)
.++++|+||.++
T Consensus 4 ~~L~ENekLhk~ 15 (37)
T 1t6f_A 4 EALKENEKLHKE 15 (37)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344444444443
No 372
>3ck6_A Putative membrane transport protein; APC91421.1, ZNTB, cytoplasmic domain, PSI-2, protein structure initiative; HET: MSE; 1.90A {Vibrio parahaemolyticus rimd 2210633} PDB: 3bhc_A*
Probab=23.48 E-value=2.8e+02 Score=22.02 Aligned_cols=18 Identities=17% Similarity=0.014 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 028596 64 SRIAELQSQIESIYSSLS 81 (207)
Q Consensus 64 ~~i~eLq~rvs~Le~~L~ 81 (207)
..|+.|++.+..+-+.+.
T Consensus 171 ~~l~~lrr~l~~lrr~l~ 188 (252)
T 3ck6_A 171 YNHIAAQKALISIKRFIR 188 (252)
T ss_dssp CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345566666665555554
No 373
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=23.46 E-value=1.6e+02 Score=24.88 Aligned_cols=29 Identities=10% Similarity=0.280 Sum_probs=11.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 028596 84 LGQAQADKERLSKENEALTNTVRKLQRDV 112 (207)
Q Consensus 84 L~~a~ee~~kL~kE~~sLa~TVKkL~RDv 112 (207)
.....++...|++|+..+.+.+.+|.+++
T Consensus 150 ~e~~~~~i~ql~~En~~le~~Ie~Lk~e~ 178 (250)
T 2ve7_C 150 YKSSADKMQQLNAAHQEALMKLERLEKEV 178 (250)
T ss_dssp TTHHHHHHHHHHHHHHHHHHSCC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455555555555544444444443
No 374
>4efa_E V-type proton ATPase subunit E; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_J 2kz9_A
Probab=23.16 E-value=3e+02 Score=22.24 Aligned_cols=41 Identities=12% Similarity=0.135 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 028596 82 DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVFRKTL 122 (207)
Q Consensus 82 ~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDvaKLE~FKk~L 122 (207)
+|++....+..-+.+=.+.....+.++.+|-.+-..|-+.|
T Consensus 84 aR~~vL~ar~e~i~~v~~~a~~~L~~~~~d~~~Y~~lL~~L 124 (233)
T 4efa_E 84 MRLKVLSAREQSLDGIFEETKEKLSGIANNRDEYKPILQSL 124 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 44444433333344334444444555555555544444444
No 375
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=22.94 E-value=2.1e+02 Score=20.33 Aligned_cols=40 Identities=20% Similarity=0.307 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHH----HHHHHHHHhhcc
Q 028596 88 QADKERLSKENEALTNTVRKLQRDVSKL----EVFRKTLVQSLK 127 (207)
Q Consensus 88 ~ee~~kL~kE~~sLa~TVKkL~RDvaKL----E~FKk~LmqSLq 127 (207)
.+-...|.+..+.+...+++|...+..+ +.+|..|-+-++
T Consensus 69 ~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~~~ 112 (117)
T 2zqm_A 69 DKAVAELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQSALR 112 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3444666777777777777777666543 345555544443
No 376
>1bg1_A Protein (transcription factor STAT3B); protein-DNA complex, cytokine activation, complex (transcription factor/DNA), transcription/DNA complex; HET: DNA PTR; 2.25A {Mus musculus} SCOP: a.47.1.1 b.2.5.5 d.93.1.1 PDB: 3cwg_A
Probab=22.89 E-value=3.1e+02 Score=26.61 Aligned_cols=44 Identities=23% Similarity=0.261 Sum_probs=31.1
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 27 FEQLDVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQ 72 (207)
Q Consensus 27 ~EQLdlArkIts~A~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~r 72 (207)
..|++|-.++ ..+..+|..+|.++..|.+.-.+=+=..++++.+
T Consensus 13 ~k~~ei~~~v--~~lr~~~q~~e~~ik~Le~~Qe~f~~~yk~~q~~ 56 (596)
T 1bg1_A 13 EKQQMLEQHL--QDVRKRVQDLEQKMKVVENLQDDFDFNYKTLKSQ 56 (596)
T ss_dssp HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred chHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhh
Confidence 4577776644 4678899999999999988777655445555544
No 377
>4g63_A Cytosolic IMP-GMP specific 5'-nucleotidase; structural genomics, PSI-biology, northeast structural genom consortium, NESG; 2.70A {Legionella pneumophila subsp} PDB: 2bde_A
Probab=22.74 E-value=68 Score=29.97 Aligned_cols=10 Identities=20% Similarity=0.278 Sum_probs=5.9
Q ss_pred hhhHHHHHHH
Q 028596 46 SDLESEHSAL 55 (207)
Q Consensus 46 s~LEsE~~~L 55 (207)
-+||.|+..+
T Consensus 325 ~EL~~Ei~~~ 334 (470)
T 4g63_A 325 EELGEEIASQ 334 (470)
T ss_dssp TTHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3577776543
No 378
>3ra3_A P1C; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=22.71 E-value=1.2e+02 Score=18.36 Aligned_cols=24 Identities=29% Similarity=0.509 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHH
Q 028596 93 RLSKENEALTNTVRKLQRDVSKLE 116 (207)
Q Consensus 93 kL~kE~~sLa~TVKkL~RDvaKLE 116 (207)
.|.=||+.|.+.+-.|...++.|+
T Consensus 4 alefendaleqkiaalkqkiaslk 27 (28)
T 3ra3_A 4 ALEFENDALEQKIAALKQKIASLK 27 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHhccHHHHHHHHHHHHHHHHhc
Confidence 456678888887777777666553
No 379
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli}
Probab=22.65 E-value=2.9e+02 Score=21.97 Aligned_cols=8 Identities=50% Similarity=0.783 Sum_probs=4.6
Q ss_pred EEeecCCC
Q 028596 189 LRVSIPNK 196 (207)
Q Consensus 189 ~~~~~~~~ 196 (207)
++|.++|.
T Consensus 233 v~i~~~~~ 240 (277)
T 2f1m_A 233 LRAIFPNP 240 (277)
T ss_dssp EEEEECCT
T ss_pred EEEEecCC
Confidence 45666664
No 380
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=22.33 E-value=3.7e+02 Score=23.03 Aligned_cols=42 Identities=12% Similarity=0.233 Sum_probs=25.8
Q ss_pred HHHHhhhhhHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH
Q 028596 40 AISTRVSDLESEHSALRSQLAEK-----DSRIAELQSQIESIYSSLS 81 (207)
Q Consensus 40 A~atRVs~LEsE~~~LR~~LaEK-----d~~i~eLq~rvs~Le~~L~ 81 (207)
.|..-+..++.++..|-.++-+. -..|..|++++..+-+.+.
T Consensus 192 ~y~~~l~~l~~~id~lE~~v~~~~~~~~l~~l~~lrr~l~~lrr~l~ 238 (363)
T 2iub_A 192 DYFVLLEKIDDEIDVLEEEVLERPEKETVQRTHQLKRNLVELRKTIW 238 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 34444566666666666665422 3456777777777776665
No 381
>1lrz_A FEMA, factor essential for expression of methicillin resistance; peptidoglycan, X-RAY crystallography, multiple anomalous dispersion; 2.10A {Staphylococcus aureus} SCOP: a.2.7.4 d.108.1.4 d.108.1.4
Probab=22.30 E-value=2.6e+02 Score=24.45 Aligned_cols=49 Identities=12% Similarity=0.178 Sum_probs=0.0
Q ss_pred HHHhhhhhHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q 028596 41 ISTRVSDLESEHSALRSQLAEK------DSRIAELQSQIESIYSSLS-DKLGQAQA 89 (207)
Q Consensus 41 ~atRVs~LEsE~~~LR~~LaEK------d~~i~eLq~rvs~Le~~L~-~rL~~a~e 89 (207)
+..+..+|+.++..+.++++++ ...+.++++++.+++..+. .+.-.+.+
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (426)
T 1lrz_A 252 LNEERDILNKDLNKALKDIEKRPENKKAHNKRDNLQQQLDANEQKIEEGKRLQEEH 307 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 382
>2oto_A M protein; helical coiled coil, fibrinogen-binding, virulence factor, S active protein, toxin; 3.04A {Streptococcus pyogenes serotype M1} PDB: 2xny_M
Probab=22.24 E-value=2.7e+02 Score=21.42 Aligned_cols=20 Identities=5% Similarity=-0.007 Sum_probs=8.9
Q ss_pred HHHHhhhhhHHHHHHHHHHH
Q 028596 40 AISTRVSDLESEHSALRSQL 59 (207)
Q Consensus 40 A~atRVs~LEsE~~~LR~~L 59 (207)
.+.++...|..+++.+-...
T Consensus 33 ~Lk~e~e~l~~~~~~~~~~~ 52 (155)
T 2oto_A 33 DLKARLENAMEVAGRDFKRA 52 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhH
Confidence 34444444444444433333
No 383
>1fzc_B Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_B* 1fza_B* 1fze_B* 1fzf_B* 1fzg_B* 1n86_B* 1n8e_B 2h43_B* 2hlo_B* 2hod_B* 2hpc_B* 2q9i_B* 2xnx_B 2xny_B 3e1i_B* 2z4e_B* 2oyh_B* 1ltj_B* 1rf0_B* 1lt9_B* ...
Probab=22.23 E-value=45 Score=29.61 Aligned_cols=26 Identities=19% Similarity=0.239 Sum_probs=13.4
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhc
Q 028596 101 LTNTVRKLQRDVSKLEVFRKTLVQSL 126 (207)
Q Consensus 101 La~TVKkL~RDvaKLE~FKk~LmqSL 126 (207)
|...+..|...|.+||.-..+++..+
T Consensus 35 Lq~~le~l~~KIq~Le~~v~~~~~~~ 60 (328)
T 1fzc_B 35 LRSILENLRSKIQKLESDVSAQMEYC 60 (328)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 44444555555556655555555443
No 384
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=22.13 E-value=2.6e+02 Score=21.77 Aligned_cols=20 Identities=20% Similarity=0.396 Sum_probs=16.6
Q ss_pred HHHhhhhhHHHHHHHHHHHH
Q 028596 41 ISTRVSDLESEHSALRSQLA 60 (207)
Q Consensus 41 ~atRVs~LEsE~~~LR~~La 60 (207)
++.++.+|+-|-..||.++.
T Consensus 13 LaaeL~kLqmENK~LKkkl~ 32 (110)
T 2oa5_A 13 MVKEVERLKLENKTLKQKVK 32 (110)
T ss_dssp HHHHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 46788999999999999986
No 385
>3rrr_B Fusion glycoprotein F0; six-helix bundle, membrane fusion, viral protein; HET: NAG; 2.82A {Human respiratory syncytial virus} PDB: 3rrt_B
Probab=22.03 E-value=4.7e+02 Score=24.10 Aligned_cols=63 Identities=21% Similarity=0.294 Sum_probs=47.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 028596 44 RVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLE 116 (207)
Q Consensus 44 RVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDvaKLE 116 (207)
+..+.+.+|..||..+.+=.+.|.+|+.=+..+-.+++ +.|+. =|+.|.-++.+|.++++-+.
T Consensus 10 ~a~~Na~~I~~Lk~si~~TN~AV~~l~~~~~~~~~Av~-----~lQd~-----IN~~i~Pain~l~C~v~~~~ 72 (374)
T 3rrr_B 10 KVLHLEGEVNKIKSALLSTNKAVVSLSNGVSVLTSKVL-----DLKNY-----IDKQLLPIVNKQSCSISNIE 72 (374)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHH-----HHHTHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHH-----HHHhhhhhhhhcchHhHHhH
Confidence 55678999999999999999999999988887777775 33332 24567777777777776544
No 386
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=21.84 E-value=2.7e+02 Score=21.20 Aligned_cols=24 Identities=29% Similarity=0.321 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHH---HHHHHHHH
Q 028596 66 IAELQSQIESIYSSLS---DKLGQAQA 89 (207)
Q Consensus 66 i~eLq~rvs~Le~~L~---~rL~~a~e 89 (207)
|.+||+-+...|.+|. -||+.|..
T Consensus 7 i~eLq~e~~~~E~QL~~A~QKLkdA~~ 33 (96)
T 2ic9_A 7 LKEVQDNITLHEQRLVTTRQKLKDAER 33 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777777776 45555544
No 387
>2p01_A Alpha-2-macroglobulin receptor-associated protein; RAP, cell adhesion; NMR {Homo sapiens} PDB: 2p03_A
Probab=21.74 E-value=4.5e+02 Score=23.79 Aligned_cols=24 Identities=17% Similarity=0.030 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHH
Q 028596 98 NEALTNTVRKLQRDVSKLEVFRKT 121 (207)
Q Consensus 98 ~~sLa~TVKkL~RDvaKLE~FKk~ 121 (207)
...|.+.+|++.|-|.||...-.+
T Consensus 290 ~~~leek~Kk~~rKV~Kl~~~Le~ 313 (323)
T 2p01_A 290 HALLEGRTKELGYTVKKHLQDLSG 313 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578889999999999997654433
No 388
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=21.74 E-value=3.7e+02 Score=22.76 Aligned_cols=40 Identities=28% Similarity=0.277 Sum_probs=21.1
Q ss_pred HHhhhhhHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHH
Q 028596 42 STRVSDLESEHSALRSQLA-----EKDSRIAELQSQIESIYSSLS 81 (207)
Q Consensus 42 atRVs~LEsE~~~LR~~La-----EKd~~i~eLq~rvs~Le~~L~ 81 (207)
..-+..++.++..|-.++- +--+.|..|++.+..+.+.+.
T Consensus 170 ~~~l~~l~~~i~~lE~~l~~~~~~~~l~~l~~lrr~l~~lrr~l~ 214 (339)
T 4ev6_A 170 SRILMNLEDELEELEDKLLAGYDREVMEKILGLRKTLVYFHKSLI 214 (339)
T ss_dssp HHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHhh
Confidence 3344555555555544432 223455666666666666654
No 389
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=21.70 E-value=1.6e+02 Score=25.42 Aligned_cols=14 Identities=7% Similarity=0.124 Sum_probs=6.7
Q ss_pred HHHHHHHhhccccc
Q 028596 117 VFRKTLVQSLKDDE 130 (207)
Q Consensus 117 ~FKk~LmqSLq~D~ 130 (207)
..--.|++.+=.++
T Consensus 69 kgaenlf~eII~En 82 (233)
T 2yko_A 69 TKLENTLQDIIQEN 82 (233)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHh
Confidence 33344555554444
No 390
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=21.44 E-value=2.8e+02 Score=21.30 Aligned_cols=68 Identities=12% Similarity=0.216 Sum_probs=36.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 028596 47 DLESEHSALRSQLAEKDSRIAELQSQIESIY--SSLS-DKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEV 117 (207)
Q Consensus 47 ~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le--~~L~-~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDvaKLE~ 117 (207)
.+...+..|-..|..|.+.|..|=+.+=.++ .+.| .|++...+++....+|+.. .|++-.+-+.+++.
T Consensus 54 ~f~~~~~ela~dli~k~kqIe~LIdsLP~~~~see~Q~~ri~~L~~E~~~~~~el~~---~v~e~e~ll~~v~~ 124 (132)
T 1ykh_B 54 EFSNTIDELSTDIILKTRQINKLIDSLPGVDVSAEEQLRKIDMLQKKLVEVEDEKIE---AIKKKEKLMRHVDS 124 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSTTTTCCHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHH
Confidence 4555667777777788887777754443332 2223 5666666555555555443 33443333444433
No 391
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C*
Probab=21.42 E-value=2.2e+02 Score=20.04 Aligned_cols=21 Identities=19% Similarity=0.148 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 028596 82 DKLGQAQADKERLSKENEALT 102 (207)
Q Consensus 82 ~rL~~a~ee~~kL~kE~~sLa 102 (207)
+||+.+.--+++...|...|.
T Consensus 37 ~KLRdiE~l~q~~e~e~~~l~ 57 (75)
T 3mtu_A 37 GKLRNIELICQENEGENDPVL 57 (75)
T ss_dssp HHHHHHHHHHHHTGGGTCHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHH
Confidence 566666655555444443333
No 392
>2v0o_A FCHO2, FCH domain only protein 2; lipid-binding protein, EFC domain, vesicle trafficking, membrane curvature, endocytosis, exocytosis, F-BAR domain; 2.30A {Homo sapiens}
Probab=21.36 E-value=3.1e+02 Score=21.75 Aligned_cols=16 Identities=13% Similarity=0.044 Sum_probs=6.7
Q ss_pred HHHHHHHHHhhhHHHH
Q 028596 100 ALTNTVRKLQRDVSKL 115 (207)
Q Consensus 100 sLa~TVKkL~RDvaKL 115 (207)
.....|.++|+--.++
T Consensus 178 ~Y~~~v~~~n~~~~~~ 193 (276)
T 2v0o_A 178 TYKLYVEKYALAKADF 193 (276)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444433333
No 393
>3trt_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural protein; 2.30A {Homo sapiens} PDB: 3klt_A*
Probab=21.31 E-value=2e+02 Score=19.52 Aligned_cols=14 Identities=21% Similarity=0.366 Sum_probs=7.0
Q ss_pred HHHHHHhhhHHHHH
Q 028596 103 NTVRKLQRDVSKLE 116 (207)
Q Consensus 103 ~TVKkL~RDvaKLE 116 (207)
..+..|+|.|..|+
T Consensus 56 ~Ei~elrr~iq~L~ 69 (77)
T 3trt_A 56 QESTEYRRQVQSLT 69 (77)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33555555555444
No 394
>3g67_A Methyl-accepting chemotaxis protein; four-helix bundle, signaling protein; 2.17A {Thermotoga maritima} PDB: 3g6b_A 3ur1_C
Probab=21.21 E-value=3.5e+02 Score=22.29 Aligned_cols=31 Identities=0% Similarity=0.198 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 028596 85 GQAQADKERLSKENEALTNTVRKLQRDVSKL 115 (207)
Q Consensus 85 ~~a~ee~~kL~kE~~sLa~TVKkL~RDvaKL 115 (207)
..+.+....+.+.-..+...+..|...+.++
T Consensus 49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 79 (213)
T 3g67_A 49 KKSGTNVDQIVERVKEASSQIGETLENIRSI 79 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444444444333
No 395
>1zhc_A Hypothetical protein HP1242; A-helical protein, unknown function; NMR {Helicobacter pylori}
Probab=21.18 E-value=70 Score=22.61 Aligned_cols=28 Identities=14% Similarity=0.058 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 50 SEHSALRSQLAEKDSRIAELQSQIESIY 77 (207)
Q Consensus 50 sE~~~LR~~LaEKd~~i~eLq~rvs~Le 77 (207)
++...|+.+=.+=|..|..|+.+...-+
T Consensus 17 ~~f~~L~~eH~~LD~~I~~le~~~~~~~ 44 (76)
T 1zhc_A 17 PHFDKIFEKHNQLDDDIKTAEQQNASDA 44 (76)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCChH
Confidence 3455555555555555555555544333
No 396
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=21.10 E-value=3.6e+02 Score=22.61 Aligned_cols=47 Identities=19% Similarity=0.294 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 028596 65 RIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLEVF 118 (207)
Q Consensus 65 ~i~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDvaKLE~F 118 (207)
.+..|+.++..|+.++. +-..++..-...+.|.-|+..|+...+..|
T Consensus 60 e~~~l~~~l~~l~~e~~-------el~d~~lR~~AEfeN~RkR~~rE~e~~~~~ 106 (213)
T 4ani_A 60 ELAAAKAQIAELEAKLS-------EMEHRYLRLYADFENFRRRTRQEMEAAEKY 106 (213)
T ss_dssp HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 397
>4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus}
Probab=20.97 E-value=2.8e+02 Score=21.13 Aligned_cols=14 Identities=21% Similarity=0.290 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHH
Q 028596 67 AELQSQIESIYSSL 80 (207)
Q Consensus 67 ~eLq~rvs~Le~~L 80 (207)
++|+.-++.+-..+
T Consensus 49 Helr~pL~~i~~~~ 62 (268)
T 4ew8_A 49 YELRTPLTTIIGYS 62 (268)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHH
Confidence 45555555444333
No 398
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=20.96 E-value=1.6e+02 Score=22.15 Aligned_cols=45 Identities=11% Similarity=0.259 Sum_probs=30.2
Q ss_pred HHHHHHHhhhhhH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 37 TSIAISTRVSDLE--------SEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (207)
Q Consensus 37 ts~A~atRVs~LE--------sE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~ 81 (207)
-..-||+|+.... .....|+.++.+-...+..|++++..||.+|.
T Consensus 61 ~TL~fa~rak~i~n~~~~n~~~~~~~l~~~~~~e~~~~~~L~~~i~~Le~el~ 113 (117)
T 3kin_B 61 STLMFGQRAKTIKNTVSVNLELTAEEWKKKYEKEKEKNKALKSVIQHLEVELN 113 (117)
T ss_dssp HHHHHHHHHTTCEEEECCCBCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcccCCceecCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445666665443 23566777777777777888888888887774
No 399
>3nr7_A DNA-binding protein H-NS; dimer, oligomerisation, DNA condensation; 3.70A {Salmonella enterica subsp} PDB: 1lr1_A 1ni8_A
Probab=20.96 E-value=2.5e+02 Score=20.50 Aligned_cols=22 Identities=18% Similarity=0.199 Sum_probs=10.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHH
Q 028596 45 VSDLESEHSALRSQLAEKDSRI 66 (207)
Q Consensus 45 Vs~LEsE~~~LR~~LaEKd~~i 66 (207)
+..||.=+.+|+.-+.||....
T Consensus 26 le~Lee~leKl~~VveERree~ 47 (86)
T 3nr7_A 26 LETLEEMLEKLEVVVNERREEE 47 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555544443
No 400
>3ni0_A Bone marrow stromal antigen 2; coiled-coil, antiviral defense, immune system, GPI anchor; 1.60A {Mus musculus}
Probab=20.86 E-value=2.9e+02 Score=21.19 Aligned_cols=65 Identities=17% Similarity=0.271 Sum_probs=33.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 028596 48 LESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQRDVSKLE 116 (207)
Q Consensus 48 LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~~sLa~TVKkL~RDvaKLE 116 (207)
|+.+.-+-.+-|.+++.....-..-|..|-.+|- + ..-+ ..+-++.-..|..-|++||..|..+.
T Consensus 23 Lq~qLT~Aq~~l~~~eaQAaTCNqTV~tL~~SL~-k--ekaq-~q~qq~~v~elqgEI~~Lnq~Lqda~ 87 (99)
T 3ni0_A 23 LQRQLTRTQDSLLQAETQANSCNLTVVTLQESLE-K--KVSQ-ALEQQARIKELENEVTKLNQELENLR 87 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H--HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H--HHHh-hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555666655555555555555554 0 0001 11112334556666677776655544
No 401
>1yvl_A Signal transducer and activator of transcription 1-alpha/beta; signaling protein; HET: PTR; 3.00A {Homo sapiens}
Probab=20.82 E-value=6.1e+02 Score=24.93 Aligned_cols=44 Identities=23% Similarity=0.255 Sum_probs=31.5
Q ss_pred hhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 27 FEQLDVARKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQ 72 (207)
Q Consensus 27 ~EQLdlArkIts~A~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~r 72 (207)
..|.++..++ ..+..+|..+|.++..|.+.-.+-+=..++++.+
T Consensus 137 ~~~~~i~~~v--~~lr~~~q~~e~~ik~Le~~Qe~f~~~y~~~~~~ 180 (683)
T 1yvl_A 137 DKQKELDSKV--RNVKDKVMCIEHEIKSLEDLQDEYDFKCKTLQNR 180 (683)
T ss_dssp HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3466666654 4677889999999999888777766666666544
No 402
>1g5g_A Fusion protein; NDV, paramyxovirus; HET: NAG BMA; 3.30A {Newcastle disease virus} SCOP: f.12.1.1 h.3.2.1 PDB: 3maw_A*
Probab=20.78 E-value=1.1e+02 Score=28.94 Aligned_cols=77 Identities=14% Similarity=0.198 Sum_probs=22.1
Q ss_pred HHHH--HHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 30 LDVA--RKITSIAISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRK 107 (207)
Q Consensus 30 LdlA--rkIts~A~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~~sLa~TVKk 107 (207)
|.|| -.||+-+--.+..+.++++.+||+.+..=.+.+.+|..-++.+-.+++ +.|+. =|+.|.-++..
T Consensus 96 LGVATaAqiTAavAL~~a~~na~~I~~lk~si~~tn~Av~~l~~~~~~~~~av~-----~~q~~-----in~~i~p~i~~ 165 (481)
T 1g5g_A 96 LGVATAAQITAASALIQANQNAANILRLKESIAATNEAVHEVTNGLSQLAVAVG-----KMQQF-----VNDQFNKTAQE 165 (481)
T ss_dssp --------------------------------------------CHHHHHHHHH-----HHHHH-----HHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHH-----HHHHhhhhhhh
Confidence 4555 567776666778889999999999999999999999999888888876 22221 14556677777
Q ss_pred HhhhHHHHH
Q 028596 108 LQRDVSKLE 116 (207)
Q Consensus 108 L~RDvaKLE 116 (207)
|.++++-++
T Consensus 166 l~C~v~~~~ 174 (481)
T 1g5g_A 166 LDCIKITQQ 174 (481)
T ss_dssp HHHHHHHHH
T ss_pred cchHHHHHH
Confidence 777776543
No 403
>3k8w_A Flagellin homolog; flagellum, structural protein, bacterial flagellu; 1.70A {Sphingomonas SP} PDB: 2zbi_A 3k8v_A
Probab=20.59 E-value=4.6e+02 Score=23.46 Aligned_cols=52 Identities=15% Similarity=0.160 Sum_probs=25.3
Q ss_pred chhhHHHHHHHHHH----HHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 028596 26 PFEQLDVARKITSI----AISTRVSDLESEHSALRSQLAEKDSRIAELQSQIESIYSSLS 81 (207)
Q Consensus 26 P~EQLdlArkIts~----A~atRVs~LEsE~~~LR~~LaEKd~~i~eLq~rvs~Le~~L~ 81 (207)
-.+||--+.||.+- |...+..+|.++++.|.+-...-..-+.-|+ ..|.+|.
T Consensus 8 sqeqLSSGkRInsaSDDPag~aia~~L~sqi~~l~Q~~rN~~da~S~Lq----tAE~AL~ 63 (326)
T 3k8w_A 8 SLQRLSSGLRINSAKDDAAGLAISDRMTAQIKGLTQAQRNANDGISLAQ----TAEGALG 63 (326)
T ss_dssp ----------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH
T ss_pred HHHHHhhcCccCCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH
Confidence 35788888998876 6778888888898888887665555444443 4444444
No 404
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=20.57 E-value=2e+02 Score=24.37 Aligned_cols=9 Identities=56% Similarity=0.696 Sum_probs=4.0
Q ss_pred HHHHHHHHH
Q 028596 115 LEVFRKTLV 123 (207)
Q Consensus 115 LE~FKk~Lm 123 (207)
++.|++.|-
T Consensus 161 ~~~~~~~l~ 169 (357)
T 3rrk_A 161 LEAVRKALQ 169 (357)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 444444443
No 405
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=20.45 E-value=2.4e+02 Score=20.20 Aligned_cols=16 Identities=31% Similarity=0.540 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHhhhHH
Q 028596 98 NEALTNTVRKLQRDVS 113 (207)
Q Consensus 98 ~~sLa~TVKkL~RDva 113 (207)
+..+.+.+..|.+||.
T Consensus 44 R~~~E~d~~~LrkdvD 59 (86)
T 3swk_A 44 REEAENTLQSFRQDVD 59 (86)
T ss_dssp HHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHhhHH
Confidence 3344444444444444
No 406
>2avr_X Adhesion A; antiparallel helix-loop-helix, leucine chain; HET: FLC; 1.90A {Fusobacterium nucleatum} PDB: 3etw_A 2gkq_A 2bc6_A 3etx_A 3ety_A 2gld_A 3etz_A 2gl2_A
Probab=20.39 E-value=3.1e+02 Score=21.44 Aligned_cols=12 Identities=0% Similarity=0.216 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHH
Q 028596 70 QSQIESIYSSLS 81 (207)
Q Consensus 70 q~rvs~Le~~L~ 81 (207)
..++.+||.+|+
T Consensus 8 ~s~l~~LEaeyq 19 (119)
T 2avr_X 8 VGELQALDAEYQ 19 (119)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 344444444443
No 407
>3ajw_A Flagellar FLIJ protein; flagellum, type III secretion, coiled-coil, protein transpor; 2.10A {Salmonella typhimurium}
Probab=20.35 E-value=2.6e+02 Score=20.42 Aligned_cols=35 Identities=6% Similarity=0.150 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 028596 86 QAQADKERLSKENEALTNTVRKLQRDVSKLEVFRK 120 (207)
Q Consensus 86 ~a~ee~~kL~kE~~sLa~TVKkL~RDvaKLE~FKk 120 (207)
...+....+..+-...-..+..-.+++.++|.+|.
T Consensus 85 ~q~~~l~~~~~~~e~~r~~l~~a~~~~k~~e~L~e 119 (150)
T 3ajw_A 85 QHRLQLTQWTQKVDLALKSWREKKQRLQAWQTLQD 119 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555666666677777777764
No 408
>4etp_B Spindle POLE BODY-associated protein VIK1; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=20.09 E-value=3.8e+02 Score=24.36 Aligned_cols=48 Identities=15% Similarity=0.158 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 028596 58 QLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSKENEALTNTVRKLQ 109 (207)
Q Consensus 58 ~LaEKd~~i~eLq~rvs~Le~~L~~rL~~a~ee~~kL~kE~~sLa~TVKkL~ 109 (207)
.+..=...++.+|++++..|..+- ..-+...+=+-.|..|++++-.+.
T Consensus 11 e~~~~~~~~~~vq~kA~~~E~~Yn----~~~dKmeqE~lrRRkLENSIdElK 58 (333)
T 4etp_B 11 EIAALEKEIAALEKEISKQEKFYN----DTYNTVCKELLRSRRLENSIIEQK 58 (333)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhhhHHHhc
Confidence 333334455666677777776665 222222222223555666665443
No 409
>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis}
Probab=20.04 E-value=3.7e+02 Score=22.20 Aligned_cols=93 Identities=11% Similarity=0.235 Sum_probs=43.3
Q ss_pred hhHHHHHHHHHH--HHHHhhhhhHHHHHHH-H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Q 028596 28 EQLDVARKITSI--AISTRVSDLESEHSAL-R----SQLAEKDSRIAELQSQIESIYSSLSDKLGQAQADKERLSK---- 96 (207)
Q Consensus 28 EQLdlArkIts~--A~atRVs~LEsE~~~L-R----~~LaEKd~~i~eLq~rvs~Le~~L~~rL~~a~ee~~kL~k---- 96 (207)
+=++.+..|... .+...|.+|+.-..+. - ....+....|..|...+..+=..+..+|+.....+.++..
T Consensus 45 ~F~~~~~~I~~~I~~i~~~l~~L~~l~~~~l~t~~~~~~~~~~~~ie~l~~~i~~~~~~i~~~lk~l~~~~~~~~~~~~~ 124 (279)
T 2xhe_B 45 DFFNRVKRIRDNIEDIEQAIEQVAQLHTESLVAVSKEDRDRLNEKLQDTMARISALGNKIRADLKQIEKENKRAQQEGTF 124 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Confidence 445566655554 4555555554333211 0 0000234555555555555555555555555554443322
Q ss_pred -------HHHHHHHHHHHHhhhHHH-HHHHHH
Q 028596 97 -------ENEALTNTVRKLQRDVSK-LEVFRK 120 (207)
Q Consensus 97 -------E~~sLa~TVKkL~RDvaK-LE~FKk 120 (207)
+.....+.+.+|.+++.. +..|++
T Consensus 125 ~~~~~~~e~r~~k~~~~~L~~~f~~~~~~Fq~ 156 (279)
T 2xhe_B 125 EDGTVSTDLRIRQSQHSSLSRKFVKVMTRYND 156 (279)
T ss_dssp STTCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 223344555566665543 344544
Done!