Query 028597
Match_columns 207
No_of_seqs 154 out of 1191
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 23:30:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028597.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028597hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2pth_A Peptidyl-tRNA hydrolase 100.0 3E-70 1E-74 462.6 15.6 159 49-207 2-161 (193)
2 2z2i_A PTH, peptidyl-tRNA hydr 100.0 3.9E-70 1.3E-74 461.4 14.1 158 49-207 4-162 (191)
3 3nea_A PTH, peptidyl-tRNA hydr 100.0 1E-69 3.5E-74 463.8 16.1 158 49-207 23-181 (207)
4 1ryb_A CRS2; alpha-beta, hydro 100.0 1.4E-69 4.7E-74 462.4 16.1 162 46-207 14-175 (205)
5 4fyj_A PTH, peptidyl-tRNA hydr 100.0 6.9E-69 2.4E-73 456.3 15.2 157 50-207 11-169 (199)
6 3v2i_A PTH, peptidyl-tRNA hydr 100.0 7.7E-69 2.6E-73 462.4 15.1 160 47-207 21-191 (222)
7 4hoy_A PTH, peptidyl-tRNA hydr 100.0 4E-68 1.4E-72 449.7 15.5 157 49-207 4-161 (193)
8 4fno_A PTH, peptidyl-tRNA hydr 100.0 2.4E-70 8.1E-75 463.7 0.0 158 49-207 4-163 (194)
9 1cfz_A Hydrogenase 2 maturatio 71.5 3.9 0.00013 32.4 4.0 105 48-182 1-119 (162)
10 3pu6_A Uncharacterized protein 59.0 9.6 0.00033 30.1 4.0 103 48-183 3-113 (157)
11 2e85_A Hydrogenase 3 maturatio 57.6 6.6 0.00023 31.0 2.9 102 48-182 4-116 (159)
12 3utn_X Thiosulfate sulfurtrans 39.8 25 0.00086 30.8 4.0 36 109-144 90-125 (327)
13 1c8b_A Spore protease; novel f 34.1 16 0.00054 33.4 1.7 92 48-154 113-214 (371)
14 2jva_A Peptidyl-tRNA hydrolase 32.6 15 0.00052 27.7 1.2 41 135-183 2-44 (108)
15 3mn5_S Protein spire, actin, a 30.3 12 0.00042 23.3 0.3 14 5-18 6-19 (38)
16 3b64_A Macrophage migration in 28.0 48 0.0016 23.7 3.3 23 123-146 84-106 (112)
17 3r4c_A Hydrolase, haloacid deh 27.5 38 0.0013 26.8 2.9 25 117-141 196-220 (268)
18 4dh9_Y YAEJ; ribosome, YAEJ, r 26.9 11 0.00038 29.7 -0.5 41 135-183 2-44 (140)
19 3fzq_A Putative hydrolase; YP_ 26.3 39 0.0013 26.7 2.7 26 116-141 201-226 (274)
20 3ddh_A Putative haloacid dehal 25.3 55 0.0019 24.3 3.2 26 116-141 159-184 (234)
21 3dnp_A Stress response protein 25.3 44 0.0015 26.8 2.9 26 116-141 203-228 (290)
22 4dw8_A Haloacid dehalogenase-l 25.1 43 0.0015 26.7 2.7 25 117-141 199-223 (279)
23 2pq0_A Hypothetical conserved 24.8 40 0.0014 26.7 2.5 24 117-140 185-208 (258)
24 3dao_A Putative phosphatse; st 24.6 46 0.0016 27.0 2.9 26 116-141 212-237 (283)
25 3pgv_A Haloacid dehalogenase-l 24.3 47 0.0016 26.9 2.9 26 116-141 210-235 (285)
26 3mpo_A Predicted hydrolase of 23.7 41 0.0014 26.8 2.4 26 116-141 198-223 (279)
27 3l7y_A Putative uncharacterize 23.4 49 0.0017 27.1 2.9 25 117-141 230-254 (304)
28 3mtn_B UBA80, ubcep1, ubiquiti 21.9 89 0.003 20.5 3.5 40 122-161 32-85 (85)
29 3fwt_A Macrophage migration in 21.0 63 0.0022 24.4 2.8 24 122-146 104-127 (133)
No 1
>2pth_A Peptidyl-tRNA hydrolase; 1.20A {Escherichia coli} SCOP: c.56.3.1 PDB: 3ofv_A
Probab=100.00 E-value=3e-70 Score=462.64 Aligned_cols=159 Identities=35% Similarity=0.580 Sum_probs=150.1
Q ss_pred CeEEEEecCCCCCCCCCcchHHHHHHHHHHHHcCCCcc-ccccceEEEEEEECCeeEEEEeCCchhhccchhHHHHHHHc
Q 028597 49 PWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMN-TIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHY 127 (207)
Q Consensus 49 ~~LIVGLGNPG~~Y~~TRHNvGf~vld~La~~~~~~~~-~~~~~~~~~~~~~~~~~v~L~KP~TyMNlSG~aV~~~~~~~ 127 (207)
|+|||||||||++|++||||||||++|+||++++++++ +.++++.++++.+++++++|+||+||||+||++|+++++||
T Consensus 2 m~LIvGLGNPG~~Y~~TRHNiGf~viD~La~~~~~~~~~~~k~~~~~~~~~~~g~~v~L~KP~TyMNlSG~sV~~~~~~y 81 (193)
T 2pth_A 2 IKLIVGLANPGAEYAATRHNAGAWFVDLLAERLRAPLREEAKFFGYTSRVTLGGEDVRLLVPTTFMNLSGKAVAAMASFF 81 (193)
T ss_dssp CCEEEECCCCSTTTTTSGGGHHHHHHHHHHHHHTCCCEEEGGGTEEEEEEEETTEEEEEEEECSCGGGTHHHHHHHHHHH
T ss_pred cEEEEEECCCCcccccCchHHHHHHHHHHHHHcCCCccccccccEEEEEEEECCeEEEEEcCCchHhcCcHHHHHHHHHh
Confidence 58999999999999999999999999999999999987 55688999999999999999999999999999999999999
Q ss_pred CCCCCcEEEEeecCCCCCceEEEccCCCCCCCCchHHHHHhccCCCCccEEEEccCCCCCcccccccccCCCChHHHhcC
Q 028597 128 QVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQV 207 (207)
Q Consensus 128 ki~~~~ilVihDDLdlp~G~vrlk~gGs~~GHNGLKSI~~~Lggt~~f~RlrIGIGrP~~~~~v~~yVLs~Fs~~E~~~l 207 (207)
+|++++|||||||||||+|++|+|.+||++||||||||+++||+|++|+|||||||||..+.++++|||++|+++|++.|
T Consensus 82 ki~~~~ilVihDdldlp~G~irlk~gGs~gGHNGlkSI~~~Lg~t~~f~RlRiGIGrP~~~~~v~~yVL~~f~~~E~~~l 161 (193)
T 2pth_A 82 RINPDEILVAHDELDLPPGVAKFKLGGGHGGHNGLKDIISKLGNNPNFHRLRIGIGHPGDKNKVVGFVLGKPPVSEQKLI 161 (193)
T ss_dssp TCCGGGEEEEEEETTSCTTCEEEEESCCCTTCHHHHHHHHHTTSCCCSEEEEEECCCCSSHHHHHHHHTSCCCHHHHHHH
T ss_pred CCCHHHEEEEecccCCCCceEEEecCCCCCCCCCHHHHHHHhCCCCCeEEEEEEeCCCCCCCchhHHhhCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999932899999999999996555799999999999999864
No 2
>2z2i_A PTH, peptidyl-tRNA hydrolase; protein synthesis; 1.98A {Mycobacterium tuberculosis} PDB: 2z2j_A 2z2k_A 3tck_A 3tcn_A 3td2_A 3td6_A 2jrc_A 3p2j_A 3kk0_A 3kjz_A
Probab=100.00 E-value=3.9e-70 Score=461.44 Aligned_cols=158 Identities=46% Similarity=0.805 Sum_probs=150.1
Q ss_pred CeEEEEecCCCCCCCCCcchHHHHHHHHHHHHcCCCccc-cccceEEEEEEECCeeEEEEeCCchhhccchhHHHHHHHc
Q 028597 49 PWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNT-IQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHY 127 (207)
Q Consensus 49 ~~LIVGLGNPG~~Y~~TRHNvGf~vld~La~~~~~~~~~-~~~~~~~~~~~~~~~~v~L~KP~TyMNlSG~aV~~~~~~~ 127 (207)
|+|||||||||++|++|||||||+++|+||+++++++.+ .++++.++++.+++++++|+||+||||+||++|+++++||
T Consensus 4 m~LIvGLGNPG~~Y~~TRHNiGf~viD~La~~~~~~~~~~~k~~~~~~~~~~~g~~v~L~KP~TyMNlSG~aV~~~~~~y 83 (191)
T 2z2i_A 4 PLLVVGLGNPGANYARTRHNLGFVVADLLAARLGAKFKAHKRSGAEVATGRSAGRSLVLAKPRCYMNESGRQIGPLAKFY 83 (191)
T ss_dssp CEEEEECCCCSHHHHTBGGGHHHHHHHHHHHHTTCCCEECTTTSSEEEEEEETTEEEEEEECSSCGGGTHHHHHHHHHHT
T ss_pred cEEEEEECCCCchhccCchHHHHHHHHHHHHHcCCCccccccccEEEEEEEECCeEEEEEcCCchhhcccHHHHHHHHHh
Confidence 589999999999999999999999999999999998865 4588999999999999999999999999999999999999
Q ss_pred CCCCCcEEEEeecCCCCCceEEEccCCCCCCCCchHHHHHhccCCCCccEEEEccCCCCCcccccccccCCCChHHHhcC
Q 028597 128 QVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQV 207 (207)
Q Consensus 128 ki~~~~ilVihDDLdlp~G~vrlk~gGs~~GHNGLKSI~~~Lggt~~f~RlrIGIGrP~~~~~v~~yVLs~Fs~~E~~~l 207 (207)
+++++++||||||||||+|++|+|.+||++||||||||+++| ||++|+|||||||||+.+.++++|||++|+++|++.|
T Consensus 84 ki~~~~ilVihDdldlp~G~irlk~gGs~gGHNGlkSI~~~L-gt~~f~RlRiGIGrP~~~~~v~~yVL~~f~~~E~~~l 162 (191)
T 2z2i_A 84 SVAPANIIVIHDDLDLEFGRIRLKIGGGEGGHNGLRSVVAAL-GTKDFQRVRIGIGRPPGRKDPAAFVLENFTPAERAEV 162 (191)
T ss_dssp TCCGGGEEEEEEETTSCTTCEEEEESCCCTTCHHHHHHHHHH-TCSCSEEEEEECCCCCTTSCHHHHHTSBCCHHHHTTH
T ss_pred CCCHHHEEEEecccCCCCceEEEecCCCCCCcCCHHHHHHHh-CCCCeEEEEEeeCCCCCCCchhhHhcCCCCHHHHHHH
Confidence 999999999999999999999999999999999999999999 5899999999999996556799999999999999864
No 3
>3nea_A PTH, peptidyl-tRNA hydrolase; 2.25A {Francisella tularensis subsp}
Probab=100.00 E-value=1e-69 Score=463.80 Aligned_cols=158 Identities=38% Similarity=0.610 Sum_probs=151.7
Q ss_pred CeEEEEecCCCCCCCCCcchHHHHHHHHHHHHcCCCcccc-ccceEEEEEEECCeeEEEEeCCchhhccchhHHHHHHHc
Q 028597 49 PWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTI-QSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHY 127 (207)
Q Consensus 49 ~~LIVGLGNPG~~Y~~TRHNvGf~vld~La~~~~~~~~~~-~~~~~~~~~~~~~~~v~L~KP~TyMNlSG~aV~~~~~~~ 127 (207)
|+|||||||||++|++|||||||+++|+||+++++++++. ++.+.++++.+++++++|+||+||||+||++|+++++||
T Consensus 23 ~~LIVGLGNPG~~Y~~TRHNvGf~vvD~La~~~~~~~~~~~k~~~~~~~~~~~g~~v~LlKP~TyMNlSG~aV~~~~~~y 102 (207)
T 3nea_A 23 IKMIIGLGNIGKEYQDTRHNVGEWFIAKIAQDNNQSFSSNPKLNCNLAKVSIDYNNVVLVFPTTYMNNSGLAVSKVANFY 102 (207)
T ss_dssp CCEEEECCCCSTTTTTSGGGHHHHHHHHHHHHTTCCCEEEGGGTEEEEEEEETTEEEEEEEESSCGGGHHHHHHHHHHHH
T ss_pred cEEEEEeCCCchhhCcCchHHHHHHHHHHHHHcCCCccccccccEEEEEEEECCeEEEEEeCCcchhCCcHHHHHHHHHh
Confidence 6899999999999999999999999999999999998765 688999999999999999999999999999999999999
Q ss_pred CCCCCcEEEEeecCCCCCceEEEccCCCCCCCCchHHHHHhccCCCCccEEEEccCCCCCcccccccccCCCChHHHhcC
Q 028597 128 QVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQV 207 (207)
Q Consensus 128 ki~~~~ilVihDDLdlp~G~vrlk~gGs~~GHNGLKSI~~~Lggt~~f~RlrIGIGrP~~~~~v~~yVLs~Fs~~E~~~l 207 (207)
+++++++||||||||||+|++|+|.+||++||||||||+++| ||++|+|||||||||+.+.++++|||++|+++|++.|
T Consensus 103 ki~~e~ilVihDdLDLp~G~iRlk~gGs~gGHNGLkSIi~~L-gt~~f~RlRiGIGrP~~~~~v~~yVL~~fs~~E~~~l 181 (207)
T 3nea_A 103 KIAPAEILVVHDELDIDSGEIRLKKGGGHGGHNGLRSINQHL-GTNDYLRLRIGIGHPGHKSKVANYVLSNPSIAQKKDI 181 (207)
T ss_dssp TCCGGGEEEEEEETTSCTTCEEEEESCCCTTCHHHHHHHHHH-TCCCSEEEEEECCCCSSGGGHHHHHTSCCCHHHHHHH
T ss_pred CCCHHHEEEEEEcCCCCCceEEEecCCCCCCCCCHHHHHHHh-CCCCeeEEEEEeCCCCCCCchHHHhccCCCHHHHHHH
Confidence 999999999999999999999999999999999999999999 5899999999999998878899999999999999764
No 4
>1ryb_A CRS2; alpha-beta, hydrolase; 1.70A {Zea mays} SCOP: c.56.3.1 PDB: 1rym_A 1ryn_A
Probab=100.00 E-value=1.4e-69 Score=462.44 Aligned_cols=162 Identities=75% Similarity=1.263 Sum_probs=152.6
Q ss_pred cCcCeEEEEecCCCCCCCCCcchHHHHHHHHHHHHcCCCccccccceEEEEEEECCeeEEEEeCCchhhccchhHHHHHH
Q 028597 46 EYTPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAA 125 (207)
Q Consensus 46 ~~~~~LIVGLGNPG~~Y~~TRHNvGf~vld~La~~~~~~~~~~~~~~~~~~~~~~~~~v~L~KP~TyMNlSG~aV~~~~~ 125 (207)
++.++|||||||||++|++|||||||+++|+||+++++++++.++.+.++++.+++++++|+||+||||+||++|+++++
T Consensus 14 ~~~~~LIVGLGNPG~~Y~~TRHNiGf~viD~La~~~~~~~~~~k~~~~~~~~~~~g~~v~LlKP~TyMNlSG~sV~~~~~ 93 (205)
T 1ryb_A 14 EYTPWLIAGLGNPGNKYYGTRHNVGFEMVDRIAAEEGITMNTIQSKSLLGIGSIGEVPVLVVKPQSYMNYSGEAIGPLAA 93 (205)
T ss_dssp -CCCEEEEECCCCSGGGTTBGGGHHHHHHHHHHHHTTCCCCEEETTEEEEEEEETTEEEEEEEECSCGGGHHHHHHHHHH
T ss_pred CCCCEEEEEECCCChhhccCchHHHHHHHHHHHHHcCCCcccccccEEEEEEEECCEEEEEEcCCchhhccCHHHHHHHH
Confidence 44579999999999999999999999999999999999988777899999999999999999999999999999999999
Q ss_pred HcCCCCCcEEEEeecCCCCCceEEEccCCCCCCCCchHHHHHhccCCCCccEEEEccCCCCCcccccccccCCCChHHHh
Q 028597 126 HYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIERE 205 (207)
Q Consensus 126 ~~ki~~~~ilVihDDLdlp~G~vrlk~gGs~~GHNGLKSI~~~Lggt~~f~RlrIGIGrP~~~~~v~~yVLs~Fs~~E~~ 205 (207)
||++++++|||||||||||+|++|+|.+||++||||||||+++|.||++|+|||||||||+.+.++++|||++|+++|++
T Consensus 94 ~yki~~~~ilVihDdLdLp~G~iRlk~gGs~gGHNGLkSI~~~L~gt~~f~RlRiGIGrP~~~~~v~~yVL~~f~~~E~~ 173 (205)
T 1ryb_A 94 YYQVPLRHILLIYDDTSLPNGVLRLQKKGGHGRHNGLQNVIEHLDGRREFPRLSIGIGSPPGKMDPRAFLLQKFSSEERV 173 (205)
T ss_dssp HTTCCGGGEEEEEEETTSCTTCEEEESSCCCTTCHHHHHHHHHTTTCCCSCEEEEECCCCSTTCCHHHHHTSBCCHHHHH
T ss_pred HhCCCHHHEEEEeecccCCCCeEEEeeCCCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCchhhhhcCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999338999999999999976567999999999999997
Q ss_pred cC
Q 028597 206 QV 207 (207)
Q Consensus 206 ~l 207 (207)
.|
T Consensus 174 ~l 175 (205)
T 1ryb_A 174 QI 175 (205)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 5
>4fyj_A PTH, peptidyl-tRNA hydrolase; 1.77A {Pseudomonas aeruginosa} PDB: 4fno_A 4djj_A* 4erx_A 4dhw_A
Probab=100.00 E-value=6.9e-69 Score=456.34 Aligned_cols=157 Identities=39% Similarity=0.631 Sum_probs=149.7
Q ss_pred eEEEEecCCCCCCCCCcchHHHHHHHHHHHHcCCCccc-cccceEEEEEEECCeeEEEEeCCchhhccchhHHHHHHHcC
Q 028597 50 WLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNT-IQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHYQ 128 (207)
Q Consensus 50 ~LIVGLGNPG~~Y~~TRHNvGf~vld~La~~~~~~~~~-~~~~~~~~~~~~~~~~v~L~KP~TyMNlSG~aV~~~~~~~k 128 (207)
-|||||||||++|+.|||||||+++|+||+++++++.+ .++.+.++++.+++++++|+||+||||+||++|+++++||+
T Consensus 11 ~lIvGLGNPG~~Y~~TRHNvGf~vlD~La~~~~~~~~~~~k~~~~~~~~~~~g~~v~LlKP~TyMNlSG~aV~~~~~~yk 90 (199)
T 4fyj_A 11 QLIVGLGNPGPEYDQTRHNAGALFVERLAHAQGVSLVADRKYFGLVGKFSHQGKDVRLLIPTTYMNRSGQSVAALAGFFR 90 (199)
T ss_dssp CEEEECCCCSGGGTTCGGGHHHHHHHHHHHHTTCCCEEEGGGTEEEEEEEETTEEEEEEEECSCGGGHHHHHHHHHHHTT
T ss_pred eEEEEeCCCchhhCcCchHHHHHHHHHHHHHcCCCcccccccceEEEEEEECCeEEEEEeCCcchhCChHHHHHHHHHhC
Confidence 59999999999999999999999999999999998764 46789999999999999999999999999999999999999
Q ss_pred CCCCcEEEEeecCCCCCceEEEccCCCCCCCCchHHHHHhccCCC-CccEEEEccCCCCCcccccccccCCCChHHHhcC
Q 028597 129 VPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCR-EFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQV 207 (207)
Q Consensus 129 i~~~~ilVihDDLdlp~G~vrlk~gGs~~GHNGLKSI~~~Lggt~-~f~RlrIGIGrP~~~~~v~~yVLs~Fs~~E~~~l 207 (207)
++++++||||||||||+|++|+|.+||++||||||||+++| ||+ +|+|||||||||+.+.++++|||++|+++|++.|
T Consensus 91 i~~~~ilVihDdldLp~G~irlk~gGs~gGHNGLkSI~~~L-gt~~~f~RlRiGIGrP~~~~~v~~yVL~~f~~~E~~~l 169 (199)
T 4fyj_A 91 IAPDAILVAHDELDMPPGVAKLKTGGGHGGHNGLRDIIAQL-GNQNSFHRLRLGIGHPGHSSLVSGYVLGRAPRSEQELL 169 (199)
T ss_dssp CCGGGEEEEEEETTSCTTCEEEEESCCCTTCHHHHHHHHHH-CSSSCCEEEEEECCCCSSGGGHHHHHTSCCCHHHHHHH
T ss_pred CCHHHEEEEEecCCCCCceEEEecCCCCCCCCCHHHHHHHh-CCccceEEEEEEeCCCCCCCchhhhhccCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999 577 9999999999998888999999999999999764
No 6
>3v2i_A PTH, peptidyl-tRNA hydrolase; ssgcid, seattle structural genomics center for infectious DI RNA; HET: CIT; 1.65A {Burkholderia thailandensis E264}
Probab=100.00 E-value=7.7e-69 Score=462.45 Aligned_cols=160 Identities=37% Similarity=0.597 Sum_probs=148.4
Q ss_pred CcCeEEEEecCCCCCCCCCcchHHHHHHHHHHHHcCCCcccc-ccceEEEEEEECCeeEEEEeCCchhhccchhHHHHHH
Q 028597 47 YTPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTI-QSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAA 125 (207)
Q Consensus 47 ~~~~LIVGLGNPG~~Y~~TRHNvGf~vld~La~~~~~~~~~~-~~~~~~~~~~~~~~~v~L~KP~TyMNlSG~aV~~~~~ 125 (207)
||++|||||||||++|+.|||||||+++|+||+++++++.+. ++.+.+++..+++++++|+||+||||+||++|+++++
T Consensus 21 m~~~LIVGLGNPG~~Y~~TRHNiGf~vvD~La~~~~~~~~~~~kf~~~~~~~~~~g~~v~LlKP~TyMNlSG~aV~~~~~ 100 (222)
T 3v2i_A 21 SMIKLIVGLGNPGAEYTATRHNAGFWLVDQLAREAGATLRDERRFHGFYAKARLYGEEVHLLEPQTYMNRSGQSVVALAH 100 (222)
T ss_dssp -CCCEEEECCCCSGGGTTSGGGHHHHHHHHHHHHHTCCCEEEGGGTEEEEEEEETTEEEEEEEECSCGGGHHHHHHHHHH
T ss_pred ceEEEEEEeCCCchhhCcCchHHHHHHHHHHHHHcCCCcccccccceEEEEEEECCeEEEEEeCCcchhcccHHHHHHHH
Confidence 457899999999999999999999999999999999987754 5789999999999999999999999999999999999
Q ss_pred HcCCCCCcEEEEeecCCCCCceEEEccCCCCCCCCchHHHHHhccCCCCccEEEEccCCC----------CCcccccccc
Q 028597 126 HYQVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNP----------PGKMDMKAYL 195 (207)
Q Consensus 126 ~~ki~~~~ilVihDDLdlp~G~vrlk~gGs~~GHNGLKSI~~~Lggt~~f~RlrIGIGrP----------~~~~~v~~yV 195 (207)
||++++++|||||||||||+|++|+|.+||++||||||||+++| ||++|+||||||||| +.+.++++||
T Consensus 101 ~yki~~e~ilVihDdLDLp~G~iRlk~gGs~gGHNGLKSI~~~L-gt~~f~RlRIGIGrP~~~~p~~~~~~~~~~v~~yV 179 (222)
T 3v2i_A 101 FFKILPNEILVAHDELDLPPGAVKLKLGGGSGGHNGLKDISAHL-SSQQYWRLRIGIGHPRDMIPESARAGAKPDVANFV 179 (222)
T ss_dssp HHTCCGGGEEEEEEETTSCTTCEEEEECCCCTTCHHHHHHHHHH-TCCCSEEEEEECCCTTTTCC---------CHHHHT
T ss_pred HhCCCHHHEEEEEecCCCCCceEEEeCCCCCCCCCCHHHHHHHh-CCCCeEEEEEEcCCCcccccccccCCCCCcHHHHh
Confidence 99999999999999999999999999999999999999999999 589999999999999 5556899999
Q ss_pred cCCCChHHHhcC
Q 028597 196 LQKFSPIEREQV 207 (207)
Q Consensus 196 Ls~Fs~~E~~~l 207 (207)
|++|+++|++.|
T Consensus 180 L~~fs~~E~~~l 191 (222)
T 3v2i_A 180 LKPPRKEEQDVI 191 (222)
T ss_dssp TSCCCHHHHHHH
T ss_pred ccCCCHHHHHHH
Confidence 999999999764
No 7
>4hoy_A PTH, peptidyl-tRNA hydrolase; enzyme, molecular conformation, INH hydrolase; 1.78A {Acinetobacter baumannii} PDB: 4fot_A 4fop_A
Probab=100.00 E-value=4e-68 Score=449.67 Aligned_cols=157 Identities=40% Similarity=0.670 Sum_probs=149.5
Q ss_pred CeEEEEecCCCCCCCCCcchHHHHHHHHHHHHcCCCccc-cccceEEEEEEECCeeEEEEeCCchhhccchhHHHHHHHc
Q 028597 49 PWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNT-IQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHY 127 (207)
Q Consensus 49 ~~LIVGLGNPG~~Y~~TRHNvGf~vld~La~~~~~~~~~-~~~~~~~~~~~~~~~~v~L~KP~TyMNlSG~aV~~~~~~~ 127 (207)
++|||||||||++|++|||||||+++|+||++++++++. .++.+.+++..+++++++|+||+||||+||++|+++++||
T Consensus 4 ikLIVGLGNPG~~Y~~TRHNiGf~~ld~La~~~~~~~~~~~k~~~~~~~~~~~~~~v~l~kP~TyMN~SG~aV~~~~~~~ 83 (193)
T 4hoy_A 4 ISLIVGLGNPGSEYAQTRHNAGFWFVEQLADKYGITLKNDPKFHGISGRGNIEGHDVRLLLPMTYMNRSGQSVVPFSKFY 83 (193)
T ss_dssp CCEEEECCCCSTTTTTBGGGHHHHHHHHHHHHTTCCCEEEGGGTEEEEEEEETTEEEEEEEECSCGGGTHHHHHHHHHHT
T ss_pred ceEEEEcCCCchhhCcCcccHHHHHHHHHHHHcCCCccccccccEEEEEEEECCEEEEEEeCCCccccchhhHHHHHHHc
Confidence 469999999999999999999999999999999998865 4678999999999999999999999999999999999999
Q ss_pred CCCCCcEEEEeecCCCCCceEEEccCCCCCCCCchHHHHHhccCCCCccEEEEccCCCCCcccccccccCCCChHHHhcC
Q 028597 128 QVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGCREFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQV 207 (207)
Q Consensus 128 ki~~~~ilVihDDLdlp~G~vrlk~gGs~~GHNGLKSI~~~Lggt~~f~RlrIGIGrP~~~~~v~~yVLs~Fs~~E~~~l 207 (207)
+++++++||||||||||+|++|+|.+||++||||||||+++| || ||+|||||||||+++.++++|||++|+++|++.|
T Consensus 84 ki~~~~ilVihDdldL~~G~irlk~~G~~gGHNGlkSI~~~l-gt-df~RlRiGIGrP~~~~~v~~yVL~~f~~~E~~~l 161 (193)
T 4hoy_A 84 QIAPEAILIAHDELDMNPGVIRLKTGGGHGGHNGLRDIVPHI-GP-NFHRLRIGIGHPGSKERVSGHVLGKAPSNEQSLM 161 (193)
T ss_dssp TCCGGGEEEEEEETTSCTTCEEEEESCCCTTCHHHHTTHHHH-CS-CSEEEEEECCCCSSGGGHHHHHTSBCCHHHHHHH
T ss_pred CCCchheEEeeeccccccCceeeccCCCCCCcCCccchhhHh-cc-ccceEEEeeCCCCCCCCcccccCCCCCHHHHHHH
Confidence 999999999999999999999999999999999999999999 45 7999999999999888999999999999999753
No 8
>4fno_A PTH, peptidyl-tRNA hydrolase; 2.25A {Pseudomonas aeruginosa} PDB: 4djj_A* 4erx_A 4dhw_A
Probab=100.00 E-value=2.4e-70 Score=463.75 Aligned_cols=158 Identities=39% Similarity=0.619 Sum_probs=148.8
Q ss_pred CeEEEEecCCCCCCCCCcchHHHHHHHHHHHHcCCCcc-ccccceEEEEEEECCeeEEEEeCCchhhccchhHHHHHHHc
Q 028597 49 PWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMN-TIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHY 127 (207)
Q Consensus 49 ~~LIVGLGNPG~~Y~~TRHNvGf~vld~La~~~~~~~~-~~~~~~~~~~~~~~~~~v~L~KP~TyMNlSG~aV~~~~~~~ 127 (207)
|+|||||||||++|++|||||||+++|+||+++++++. +.++.+.++++.+++++++|+||+||||+||++|+++++||
T Consensus 4 m~LIvGLGNPG~~Y~~TRHNiGf~viD~La~~~~~~~~~~~k~~~~~~~~~~~g~~v~LlKP~TyMNlSG~aV~~~~~fy 83 (194)
T 4fno_A 4 VQLIVGLGNPGPEYDQTRHNAGALFVERLAHAQGVSLVADRKYFGLVGKFSHQGKDVRLLIPTTYMNRSGQSVAALAGFF 83 (194)
Confidence 57999999999999999999999999999999998876 34688888888888999999999999999999999999999
Q ss_pred CCCCCcEEEEeecCCCCCceEEEccCCCCCCCCchHHHHHhccCC-CCccEEEEccCCCCCcccccccccCCCChHHHhc
Q 028597 128 QVPLRHILVIYDEMSLMNGVLRLQPKGGHGHHNGLKSVMNHLDGC-REFPRLCIGIGNPPGKMDMKAYLLQKFSPIEREQ 206 (207)
Q Consensus 128 ki~~~~ilVihDDLdlp~G~vrlk~gGs~~GHNGLKSI~~~Lggt-~~f~RlrIGIGrP~~~~~v~~yVLs~Fs~~E~~~ 206 (207)
+|+++++||||||||||+|++|+|.+||++||||||||+++| || ++|+|||||||||..+.++++|||++|+++|++.
T Consensus 84 ki~~~~ilVihDdldLp~G~irlk~gGs~gGHNGLkSI~~~L-gt~~~f~RlRiGIGrP~~~~~v~~yVL~~f~~~E~~~ 162 (194)
T 4fno_A 84 RIAPDAILVAHDELDMPPGVAKLKTGGGHGGHNGLRDIIAQL-GNQNSFHRLRLGIGHPGHSSLVSGYVLGRAPRSEQEL 162 (194)
Confidence 999999999999999999999999999999999999999999 58 8999999999999645679999999999999986
Q ss_pred C
Q 028597 207 V 207 (207)
Q Consensus 207 l 207 (207)
|
T Consensus 163 l 163 (194)
T 4fno_A 163 L 163 (194)
Confidence 4
No 9
>1cfz_A Hydrogenase 2 maturation protease; metzincins, nickel; 2.20A {Escherichia coli} SCOP: c.56.1.1 PDB: 2kml_A
Probab=71.53 E-value=3.9 Score=32.36 Aligned_cols=105 Identities=23% Similarity=0.342 Sum_probs=57.8
Q ss_pred cCeEEEEecCCCCCCCCCcchHHHHHHHHHHHHcCCCccccccceEEEEEEECCeeEEEEeCCchhhccchhHHHHHHHc
Q 028597 48 TPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHY 127 (207)
Q Consensus 48 ~~~LIVGLGNPG~~Y~~TRHNvGf~vld~La~~~~~~~~~~~~~~~~~~~~~~~~~v~L~KP~TyMNlSG~aV~~~~~~~ 127 (207)
|+.+|+|+||+=. .-==+|..++++|.+++..+. .+.++-=.| .|..+...+.
T Consensus 1 m~ilVlGiGN~l~----gDDG~G~~v~~~L~~~~~~p~-----------------~v~vid~gt----~~~~l~~~l~-- 53 (162)
T 1cfz_A 1 MRILVLGVGNILL----TDEAIGVRIVEALEQRYILPD-----------------YVEILDGGT----AGMELLGDMA-- 53 (162)
T ss_dssp CCEEEEEESCTTB----GGGGHHHHHHHHHHHHEECCT-----------------TEEEEEEET----CCGGGHHHHS--
T ss_pred CCEEEEEECCccc----ccccHHHHHHHHHHhhCCCCC-----------------CeEEEECCC----CHHHHHHHHh--
Confidence 3579999999843 233699999999998754321 011110000 1222211122
Q ss_pred CCCCCcEEEEee---cCCCCCceEEEccC--------CCCCCCC-chHHHHHhccCCCCcc-EE-EEcc
Q 028597 128 QVPLRHILVIYD---EMSLMNGVLRLQPK--------GGHGHHN-GLKSVMNHLDGCREFP-RL-CIGI 182 (207)
Q Consensus 128 ki~~~~ilVihD---DLdlp~G~vrlk~g--------Gs~~GHN-GLKSI~~~Lggt~~f~-Rl-rIGI 182 (207)
-.+.+||.| +.+.++|++++-.. .+...|+ |+..+.+.+.-..++. ++ =|||
T Consensus 54 ---~~d~lIiVDA~~~~g~~PGti~~~~~~~l~~~~~~~~s~H~~~l~~~L~~~~~~g~~P~~v~ligi 119 (162)
T 1cfz_A 54 ---NRDHLIIADAIVSKKNAPGTMMILRDEEVPALFTNKISPHQLGLADVLSALRFTGEFPKKLTLVGV 119 (162)
T ss_dssp ---SCSEEEEEEECCSSCSCTTCEEEEETTHHHHHHCCSSCHHHHHHHHHHHHHHHTTCCCSEEEEEEE
T ss_pred ---CCCEEEEEEehhhcCCCCCEEEEEchHHcchhccCCcCCCcCCHHHHHHHHHHcCCCCCeEEEEEE
Confidence 136677778 56889999886221 1233454 7888777652122354 33 4576
No 10
>3pu6_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.60A {Wolinella succinogenes}
Probab=58.98 E-value=9.6 Score=30.08 Aligned_cols=103 Identities=13% Similarity=0.079 Sum_probs=49.8
Q ss_pred cCeEEEEecCCCCCCCCCcchHHHHHHHHHHHHcCCCccccccceEEEEEEECCeeEEEEeCCchhhccchhHHHHHHHc
Q 028597 48 TPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKPQAYMNFSGESVGPLAAHY 127 (207)
Q Consensus 48 ~~~LIVGLGNPG~~Y~~TRHNvGf~vld~La~~~~~~~~~~~~~~~~~~~~~~~~~v~L~KP~TyMNlSG~aV~~~~~~~ 127 (207)
|+.||+|+|||=. .-==+|..++++|++.+. . +.++-=. ..|..+...++..
T Consensus 3 m~ilVlGiGN~L~----gDDG~G~~v~~~L~~~~p--------~------------v~vid~G----t~~~~l~~~l~~~ 54 (157)
T 3pu6_A 3 LKKVLLCVGNELR----GDDGVAIALGRLVEEQMP--------E------------WSVFFGY----DTPESEFGKLREL 54 (157)
T ss_dssp CCEEEEEECCTTB----GGGGHHHHHHHHHHHHCT--------T------------EEEEEEE----TCGGGGHHHHHHH
T ss_pred CCEEEEEECCccc----ccccHHHHHHHHHHhhCC--------C------------eEEEECC----CCHHHHHHHHHhc
Confidence 4579999999853 334689999999984321 0 1111000 1122222223321
Q ss_pred CCCCCcEEEEeec-CCCCCceEEEccCC------CCCCCCchHHHHHhccCCCCccEEE-EccC
Q 028597 128 QVPLRHILVIYDE-MSLMNGVLRLQPKG------GHGHHNGLKSVMNHLDGCREFPRLC-IGIG 183 (207)
Q Consensus 128 ki~~~~ilVihDD-Ldlp~G~vrlk~gG------s~~GHNGLKSI~~~Lggt~~f~Rlr-IGIG 183 (207)
.. +.+||.|= .+.++|++++-..- -+...-|+..+.+.+.. ...++. |||-
T Consensus 55 --~~-d~lIiVDA~~g~~PGti~~~~~~~~~~~~~s~H~~~l~~~L~~l~~--~~p~v~liGie 113 (157)
T 3pu6_A 55 --AP-DVIVVADAMSGFKEGEIEFLDLSDERTYLYSTHNLPTPILISYLRG--ICSKTIFLGIS 113 (157)
T ss_dssp --CC-SEEEEEEEEEC----CEEEEETTSHHHHHC-----CCHHHHHHHHH--HCSEEEEEEEE
T ss_pred --CC-CEEEEEEecCCCCCcEEEEEchhHhcCCCCCCCCCCHHHHHHHHHc--cCCCEEEEEEE
Confidence 13 44444443 46788998864322 23455688888887742 234544 3554
No 11
>2e85_A Hydrogenase 3 maturation protease; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.70A {Escherichia coli} PDB: 2i8l_A
Probab=57.60 E-value=6.6 Score=30.98 Aligned_cols=102 Identities=19% Similarity=0.206 Sum_probs=56.8
Q ss_pred cCeEEEEecCCCCCCCCCcchHHHHHHHHHHHHcCCCccccccceEEEEEEECCeeEEEEeC-CchhhccchhHHHHHHH
Q 028597 48 TPWLIVGLGNPGIKYHGTRHNVGFEMIDHIAQAQRIAMNTIQSKALIGIGSIGEVPILLAKP-QAYMNFSGESVGPLAAH 126 (207)
Q Consensus 48 ~~~LIVGLGNPG~~Y~~TRHNvGf~vld~La~~~~~~~~~~~~~~~~~~~~~~~~~v~L~KP-~TyMNlSG~aV~~~~~~ 126 (207)
|+.+|+|+||+=. .-==+|..++++|.+.+. . + +.++-= +.=||+ ...+..
T Consensus 4 M~~lVlGiGN~l~----gDDG~G~~v~~~L~~~~~---~--------------~--v~vid~gt~~~~l-----~~~l~~ 55 (159)
T 2e85_A 4 VTDVLLCVGNSMM----GDDGAGPLLAEKCAAAPK---G--------------N--WVVIDGGSAPEND-----IVAIRE 55 (159)
T ss_dssp CCEEEEEECCGGG----GGGGHHHHHHHHHHHSCC---T--------------T--CEEEECTTCSGGG-----HHHHHH
T ss_pred CCEEEEEECCccc----ccccHHHHHHHHHhhhCC---C--------------C--eEEEECCCCHHHH-----HHHHhc
Confidence 4579999999843 223599999999987531 0 0 111111 112222 122332
Q ss_pred cCCCCCcEEEEee--cCCCCCceEEEcc------CCC-CCCCCchHHHHHhccCCCCccEE-EEcc
Q 028597 127 YQVPLRHILVIYD--EMSLMNGVLRLQP------KGG-HGHHNGLKSVMNHLDGCREFPRL-CIGI 182 (207)
Q Consensus 127 ~ki~~~~ilVihD--DLdlp~G~vrlk~------gGs-~~GHNGLKSI~~~Lggt~~f~Rl-rIGI 182 (207)
+ .+ +.+||.| +.+.++|+++.-. ..+ +...-|+..+.+.+.+ ...++ =|||
T Consensus 56 ~--~~-d~lIiVDA~~~g~~PGti~~~~~~~l~~~~~~s~H~~~l~~~L~~l~~--~~p~v~liGi 116 (159)
T 2e85_A 56 L--RP-TRLLIVDATDMGLNPGEIRIIDPDDIAEMFMMTTHNMPLNYLIDQLKE--DIGEVIFLGI 116 (159)
T ss_dssp H--CC-SEEEEEEECCCSSCTTCEEECCHHHHHHTTCBCTTCCBHHHHHHHHHH--HHSEEEEEEE
T ss_pred C--CC-CEEEEEEeCCCCCCCCEEEEechhHcccccCCCCCcCCHHHHHHHHhC--CCCcEEEEEE
Confidence 2 12 4555567 4677899998521 122 3344599999988842 34443 3466
No 12
>3utn_X Thiosulfate sulfurtransferase TUM1; rhodanese-like domain; 1.90A {Saccharomyces cerevisiae}
Probab=39.83 E-value=25 Score=30.83 Aligned_cols=36 Identities=22% Similarity=0.280 Sum_probs=30.1
Q ss_pred CCchhhccchhHHHHHHHcCCCCCcEEEEeecCCCC
Q 028597 109 PQAYMNFSGESVGPLAAHYQVPLRHILVIYDEMSLM 144 (207)
Q Consensus 109 P~TyMNlSG~aV~~~~~~~ki~~~~ilVihDDLdlp 144 (207)
|...|=-|-+...+++..++|..+..||||||-+.-
T Consensus 90 ~~ph~LP~~~~f~~~l~~lGI~~d~~VVvYD~~~~~ 125 (327)
T 3utn_X 90 PYPHMFPTKKVFDDAMSNLGVQKDDILVVYDRVGNF 125 (327)
T ss_dssp SSTTCCCCHHHHHHHHHHTTCCTTCEEEEECSSSSS
T ss_pred CCCCCCcCHHHHHHHHHHcCCCCCCEEEEEeCCCCc
Confidence 445677778888999999999999999999997653
No 13
>1c8b_A Spore protease; novel fold, hydrolase; 3.00A {Bacillus megaterium} SCOP: c.56.1.2
Probab=34.10 E-value=16 Score=33.44 Aligned_cols=92 Identities=15% Similarity=0.279 Sum_probs=54.0
Q ss_pred cCeEEEEecCCCCCCCCCcchHHHHHHHHHH-HHcCCCccccccceEEEEEEECCeeEEEEeC----CchhhccchhHHH
Q 028597 48 TPWLIVGLGNPGIKYHGTRHNVGFEMIDHIA-QAQRIAMNTIQSKALIGIGSIGEVPILLAKP----QAYMNFSGESVGP 122 (207)
Q Consensus 48 ~~~LIVGLGNPG~~Y~~TRHNvGf~vld~La-~~~~~~~~~~~~~~~~~~~~~~~~~v~L~KP----~TyMNlSG~aV~~ 122 (207)
...|||||||.-. |--..|-++++.|. .++-..+..... .-.-..|.-+-| +|=||. ++.++.
T Consensus 113 ~~iLVVGLGN~~v----TpDALGP~Vv~~l~vTrHl~~~g~~~~-------~~~~~pVsAiaPGVmg~TGiEt-~EiI~g 180 (371)
T 1c8b_A 113 ASCLVVGLGNLSV----TPDALGPKAVDNLLITRHLFELQPESV-------QDGFRPVSAIVPGVMGMTGIET-SDIIFG 180 (371)
T ss_dssp CCEEEEECSCSSS----GGGCHHHHHHTTCCCCHHHHHHSCCSS-------CSSCCCEEEECSGGGCCCSSCH-HHHHHH
T ss_pred CcEEEEEcCCCCc----CccccCcceeeeeeEEeehhhhCchhh-------ccCCCceEEecCCccccccccH-HHHHHH
Confidence 3589999999654 99999999999663 111111100000 001234555556 455553 355667
Q ss_pred HHHHcCCCCCcEEEEeecCCC----CCc-eEEEccCC
Q 028597 123 LAAHYQVPLRHILVIYDEMSL----MNG-VLRLQPKG 154 (207)
Q Consensus 123 ~~~~~ki~~~~ilVihDDLdl----p~G-~vrlk~gG 154 (207)
+.+.++- ++||.-|-|-. -+| .|+|.-.|
T Consensus 181 Iv~k~kP---d~VIAIDALAars~~Rl~~TIQIsdTG 214 (371)
T 1c8b_A 181 VVKKVNP---DFIIAIDALAARSIERVNATIQISDSG 214 (371)
T ss_dssp HHHHHCC---SEEEEEEEECCSSGGGSSSEEEEETTC
T ss_pred HHHhcCC---CEEEEEchhhcCcHhhcCCeEEECCCC
Confidence 7776652 67888888543 356 78876555
No 14
>2jva_A Peptidyl-tRNA hydrolase domain protein; GFT hydrolase, structural genomics, PSI-2, protein STRU initiative; NMR {Pseudomonas syringae PV}
Probab=32.56 E-value=15 Score=27.75 Aligned_cols=41 Identities=24% Similarity=0.354 Sum_probs=30.2
Q ss_pred EEEeecCCCCCceEEEc--cCCCCCCCCchHHHHHhccCCCCccEEEEccC
Q 028597 135 LVIYDEMSLMNGVLRLQ--PKGGHGHHNGLKSVMNHLDGCREFPRLCIGIG 183 (207)
Q Consensus 135 lVihDDLdlp~G~vrlk--~gGs~~GHNGLKSI~~~Lggt~~f~RlrIGIG 183 (207)
+.|.+++++|...++++ +.+|+||.| ...++.=.+|+.-+.
T Consensus 2 l~i~~~i~I~~~dl~~~~~RssGpGGQn--------VNKv~SaV~L~~d~~ 44 (108)
T 2jva_A 2 LVISNNVHLPDAEIELTAIRAQGAGGQN--------VNKVSSAMHLRFDIN 44 (108)
T ss_dssp EECSSSCEECGGGEEEEECCCTTCSSSS--------SCCCCCCEEEEEETT
T ss_pred cccccccccChHHEEEEEEECCCCCCCC--------cCCCcceEEEEEEcc
Confidence 45667888888888875 678899998 334555678888764
No 15
>3mn5_S Protein spire, actin, alpha skeletal muscle; WH2 domain, actin complex, contractIle protein-protei complex; HET: ATP LAB; 1.50A {Drosophila melanogaster}
Probab=30.29 E-value=12 Score=23.31 Aligned_cols=14 Identities=36% Similarity=0.833 Sum_probs=10.8
Q ss_pred cCCCcccccCCCCC
Q 028597 5 LSAPKTCISCPRGP 18 (207)
Q Consensus 5 ~~~~~~~~~~~~~~ 18 (207)
|..|..|++|||..
T Consensus 6 lgpp~~c~p~preq 19 (38)
T 3mn5_S 6 LGPPRMCEPSPREQ 19 (38)
T ss_pred cCCcccccCCcHHH
Confidence 55678899999853
No 16
>3b64_A Macrophage migration inhibitory factor-like protein; cytokine, MIF, LM1740MIF, lmmif, unknown function; 1.03A {Leishmania major}
Probab=28.03 E-value=48 Score=23.71 Aligned_cols=23 Identities=17% Similarity=0.248 Sum_probs=19.0
Q ss_pred HHHHcCCCCCcEEEEeecCCCCCc
Q 028597 123 LAAHYQVPLRHILVIYDEMSLMNG 146 (207)
Q Consensus 123 ~~~~~ki~~~~ilVihDDLdlp~G 146 (207)
+.+..+++++++.|..+|++ .+|
T Consensus 84 l~~~lgi~~~~v~I~~~e~~-~wg 106 (112)
T 3b64_A 84 ITKECGIVADRIFVLYFSPL-HCG 106 (112)
T ss_dssp HHHHHCCCGGGEEEEEECCS-CCE
T ss_pred HHHHhCcCcceEEEEEEEhh-Hee
Confidence 34567999999999999998 665
No 17
>3r4c_A Hydrolase, haloacid dehalogenase-like hydrolase; haloalkanoate dehalogenase enzyme superfamily, phosphohydrol hydrolase; 1.82A {Bacteroides thetaiotaomicron} SCOP: c.108.1.0
Probab=27.54 E-value=38 Score=26.83 Aligned_cols=25 Identities=20% Similarity=0.254 Sum_probs=22.7
Q ss_pred chhHHHHHHHcCCCCCcEEEEeecC
Q 028597 117 GESVGPLAAHYQVPLRHILVIYDEM 141 (207)
Q Consensus 117 G~aV~~~~~~~ki~~~~ilVihDDL 141 (207)
|.++..+++.+++++++++.+=|..
T Consensus 196 ~~~l~~l~~~lgi~~~~~ia~GD~~ 220 (268)
T 3r4c_A 196 ATGLSLFADYYRVKVSEIMACGDGG 220 (268)
T ss_dssp HHHHHHHHHHTTCCGGGEEEEECSG
T ss_pred HHHHHHHHHHcCCCHHHEEEECCcH
Confidence 5789999999999999999999964
No 18
>4dh9_Y YAEJ; ribosome, YAEJ, ribosome stalling, ribosome rescue, rescue F alternative rescue factor, ARFB, release factor, rescue of ribosomes; 3.20A {Escherichia coli} PDB: 2jy9_A
Probab=26.90 E-value=11 Score=29.72 Aligned_cols=41 Identities=22% Similarity=0.355 Sum_probs=29.7
Q ss_pred EEEeecCCCCCceEEEc--cCCCCCCCCchHHHHHhccCCCCccEEEEccC
Q 028597 135 LVIYDEMSLMNGVLRLQ--PKGGHGHHNGLKSVMNHLDGCREFPRLCIGIG 183 (207)
Q Consensus 135 lVihDDLdlp~G~vrlk--~gGs~~GHNGLKSI~~~Lggt~~f~RlrIGIG 183 (207)
|.|.+++++|...+++. +.+|+||.| ++. ++.=.+|++-|.
T Consensus 2 ~~i~~~i~I~~~el~~~~~RssGpGGQn-----VNK---v~SaV~L~~~~~ 44 (140)
T 4dh9_Y 2 IVISRHVAIPDGELEITAIRAQGAGGQH-----VNK---TSTAIHLRFDIR 44 (140)
T ss_dssp CCCCSSSCCCTTCSEEEEECCCSSSSHH-----HHT---TCCCEEEEECCS
T ss_pred ccccCCCccChHHeEEEEEECCCCCCCc-----ccc---ccceEEEEEecc
Confidence 45778999999888875 578899977 333 455677877654
No 19
>3fzq_A Putative hydrolase; YP_001086940.1, putative haloacid dehalogenase-like hydrolas structural genomics, joint center for structural genomics; HET: MSE; 2.10A {Clostridium difficile} SCOP: c.108.1.0
Probab=26.33 E-value=39 Score=26.66 Aligned_cols=26 Identities=15% Similarity=0.266 Sum_probs=22.8
Q ss_pred cchhHHHHHHHcCCCCCcEEEEeecC
Q 028597 116 SGESVGPLAAHYQVPLRHILVIYDEM 141 (207)
Q Consensus 116 SG~aV~~~~~~~ki~~~~ilVihDDL 141 (207)
-|.++..+++.++++++++++|=|..
T Consensus 201 K~~~l~~l~~~lgi~~~~~i~~GD~~ 226 (274)
T 3fzq_A 201 KGKAIKRLQERLGVTQKETICFGDGQ 226 (274)
T ss_dssp HHHHHHHHHHHHTCCSTTEEEECCSG
T ss_pred HHHHHHHHHHHcCCCHHHEEEECCCh
Confidence 36778999999999999999999865
No 20
>3ddh_A Putative haloacid dehalogenase-like family hydrol; hydrolase, HAD superfamily, ST genomics, PSI-2, protein structure initiative; 2.00A {Bacteroides thetaiotaomicron}
Probab=25.30 E-value=55 Score=24.31 Aligned_cols=26 Identities=12% Similarity=0.167 Sum_probs=24.1
Q ss_pred cchhHHHHHHHcCCCCCcEEEEeecC
Q 028597 116 SGESVGPLAAHYQVPLRHILVIYDEM 141 (207)
Q Consensus 116 SG~aV~~~~~~~ki~~~~ilVihDDL 141 (207)
.+..+..+++.++++++++++|=|.+
T Consensus 159 k~~~~~~~~~~lgi~~~~~i~iGD~~ 184 (234)
T 3ddh_A 159 TEKEYLRLLSILQIAPSELLMVGNSF 184 (234)
T ss_dssp SHHHHHHHHHHHTCCGGGEEEEESCC
T ss_pred CHHHHHHHHHHhCCCcceEEEECCCc
Confidence 67888999999999999999999987
No 21
>3dnp_A Stress response protein YHAX; structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG, unknown function; HET: MSE; 1.85A {Bacillus subtilis} SCOP: c.108.1.0
Probab=25.29 E-value=44 Score=26.80 Aligned_cols=26 Identities=8% Similarity=0.212 Sum_probs=23.0
Q ss_pred cchhHHHHHHHcCCCCCcEEEEeecC
Q 028597 116 SGESVGPLAAHYQVPLRHILVIYDEM 141 (207)
Q Consensus 116 SG~aV~~~~~~~ki~~~~ilVihDDL 141 (207)
-|.++..+++.++++++++++|=|..
T Consensus 203 K~~~l~~l~~~lgi~~~~~i~~GD~~ 228 (290)
T 3dnp_A 203 KEAGLALVASELGLSMDDVVAIGHQY 228 (290)
T ss_dssp HHHHHHHHHHHTTCCGGGEEEEECSG
T ss_pred HHHHHHHHHHHcCCCHHHEEEECCch
Confidence 36789999999999999999999954
No 22
>4dw8_A Haloacid dehalogenase-like hydrolase; HAD, putative phosphatase, enzyme function initiative, EFI, structural genomics; 1.50A {Bacteroides thetaiotaomicron} PDB: 3niw_A 4dwo_A
Probab=25.07 E-value=43 Score=26.73 Aligned_cols=25 Identities=16% Similarity=0.170 Sum_probs=22.9
Q ss_pred chhHHHHHHHcCCCCCcEEEEeecC
Q 028597 117 GESVGPLAAHYQVPLRHILVIYDEM 141 (207)
Q Consensus 117 G~aV~~~~~~~ki~~~~ilVihDDL 141 (207)
|.++..+++.++++++++++|=|..
T Consensus 199 ~~~l~~l~~~lgi~~~~~i~~GD~~ 223 (279)
T 4dw8_A 199 ALSLSVLLENIGMTREEVIAIGDGY 223 (279)
T ss_dssp HHHHHHHHHHHTCCGGGEEEEECSG
T ss_pred HHHHHHHHHHcCCCHHHEEEECCCh
Confidence 7889999999999999999999954
No 23
>2pq0_A Hypothetical conserved protein GK1056; hyopthetical protein, structural genomics, unknown function; 2.60A {Geobacillus kaustophilus} PDB: 2qyh_A
Probab=24.82 E-value=40 Score=26.72 Aligned_cols=24 Identities=8% Similarity=0.187 Sum_probs=21.6
Q ss_pred chhHHHHHHHcCCCCCcEEEEeec
Q 028597 117 GESVGPLAAHYQVPLRHILVIYDE 140 (207)
Q Consensus 117 G~aV~~~~~~~ki~~~~ilVihDD 140 (207)
|.++..+++.+++++++++++=|.
T Consensus 185 ~~~l~~l~~~lgi~~~~~ia~GDs 208 (258)
T 2pq0_A 185 AEGIRMMIEKLGIDKKDVYAFGDG 208 (258)
T ss_dssp HHHHHHHHHHHTCCGGGEEEECCS
T ss_pred HHHHHHHHHHhCCCHHHEEEECCc
Confidence 667899999999999999999885
No 24
>3dao_A Putative phosphatse; structural genomics, joint center for S genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE 1PE CIT; 1.80A {Eubacterium rectale}
Probab=24.56 E-value=46 Score=27.01 Aligned_cols=26 Identities=8% Similarity=0.130 Sum_probs=22.8
Q ss_pred cchhHHHHHHHcCCCCCcEEEEeecC
Q 028597 116 SGESVGPLAAHYQVPLRHILVIYDEM 141 (207)
Q Consensus 116 SG~aV~~~~~~~ki~~~~ilVihDDL 141 (207)
-|.+++.+++.++++++++++|=|..
T Consensus 212 K~~~l~~l~~~lgi~~~e~ia~GD~~ 237 (283)
T 3dao_A 212 KWTALSYLIDRFDLLPDEVCCFGDNL 237 (283)
T ss_dssp HHHHHHHHHHHTTCCGGGEEEEECSG
T ss_pred HHHHHHHHHHHhCCCHHHEEEECCCH
Confidence 36789999999999999999999954
No 25
>3pgv_A Haloacid dehalogenase-like hydrolase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: EPE; 2.39A {Klebsiella pneumoniae subsp}
Probab=24.25 E-value=47 Score=26.91 Aligned_cols=26 Identities=19% Similarity=0.273 Sum_probs=23.5
Q ss_pred cchhHHHHHHHcCCCCCcEEEEeecC
Q 028597 116 SGESVGPLAAHYQVPLRHILVIYDEM 141 (207)
Q Consensus 116 SG~aV~~~~~~~ki~~~~ilVihDDL 141 (207)
-|.+++.+++.++++++++++|=|..
T Consensus 210 K~~al~~l~~~lgi~~~~~ia~GD~~ 235 (285)
T 3pgv_A 210 KGHALEAVAKMLGYTLSDCIAFGDGM 235 (285)
T ss_dssp HHHHHHHHHHHTTCCGGGEEEEECSG
T ss_pred hHHHHHHHHHHhCCCHHHEEEECCcH
Confidence 37899999999999999999999965
No 26
>3mpo_A Predicted hydrolase of the HAD superfamily; SGX, PSI, structural genomics, protein structure initiative; 2.90A {Lactobacillus brevis} SCOP: c.108.1.0
Probab=23.71 E-value=41 Score=26.83 Aligned_cols=26 Identities=12% Similarity=0.277 Sum_probs=21.2
Q ss_pred cchhHHHHHHHcCCCCCcEEEEeecC
Q 028597 116 SGESVGPLAAHYQVPLRHILVIYDEM 141 (207)
Q Consensus 116 SG~aV~~~~~~~ki~~~~ilVihDDL 141 (207)
-|.+++.+++.++++++++++|=|..
T Consensus 198 K~~~l~~l~~~lgi~~~~~i~~GD~~ 223 (279)
T 3mpo_A 198 KGGTLSELVDQLGLTADDVMTLGDQG 223 (279)
T ss_dssp HHHHHHHHHHHTTCCGGGEEEC--CC
T ss_pred hHHHHHHHHHHcCCCHHHEEEECCch
Confidence 47889999999999999999998853
No 27
>3l7y_A Putative uncharacterized protein SMU.1108C; hydrolase; 2.00A {Streptococcus mutans}
Probab=23.45 E-value=49 Score=27.14 Aligned_cols=25 Identities=16% Similarity=0.251 Sum_probs=22.4
Q ss_pred chhHHHHHHHcCCCCCcEEEEeecC
Q 028597 117 GESVGPLAAHYQVPLRHILVIYDEM 141 (207)
Q Consensus 117 G~aV~~~~~~~ki~~~~ilVihDDL 141 (207)
|.++..+++.++++++++++|=|..
T Consensus 230 ~~al~~l~~~lgi~~~e~i~~GDs~ 254 (304)
T 3l7y_A 230 GWALQQLLKRWNFTSDHLMAFGDGG 254 (304)
T ss_dssp HHHHHHHHHHTTCCGGGEEEEECSG
T ss_pred HHHHHHHHHHhCcCHHHEEEECCCH
Confidence 5689999999999999999999954
No 28
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=21.91 E-value=89 Score=20.52 Aligned_cols=40 Identities=25% Similarity=0.409 Sum_probs=18.0
Q ss_pred HHHHHcCCCCCcEEEEe------ecCCC-----CCc-e--EEEccCCCCCCCCc
Q 028597 122 PLAAHYQVPLRHILVIY------DEMSL-----MNG-V--LRLQPKGGHGHHNG 161 (207)
Q Consensus 122 ~~~~~~ki~~~~ilVih------DDLdl-----p~G-~--vrlk~gGs~~GHNG 161 (207)
.+.+..++++++.-+++ ||..| .-| . +-+|..|+.+|+.|
T Consensus 32 ~i~~~~~i~~~~qrL~~~g~~L~d~~tL~~~~i~~~~~l~l~~r~~GG~ggg~~ 85 (85)
T 3mtn_B 32 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKWSTLFLLLRLRGGGGGGSG 85 (85)
T ss_dssp HHHHHHCCCGGGCEEEETTEECCTTSBTGGGTCCTTCEEEEECCCCCC------
T ss_pred HHHHHHCcChHHEEEEECCEECCCCCCHHHcCCCCCCEEEEEEECcCCCCCCCC
Confidence 34556788888665544 33222 222 2 33466777777765
No 29
>3fwt_A Macrophage migration inhibitory factor-like protein; homotrimer, tautomerase, cytokine; 1.90A {Leishmania major}
Probab=20.98 E-value=63 Score=24.37 Aligned_cols=24 Identities=21% Similarity=0.408 Sum_probs=19.8
Q ss_pred HHHHHcCCCCCcEEEEeecCCCCCc
Q 028597 122 PLAAHYQVPLRHILVIYDEMSLMNG 146 (207)
Q Consensus 122 ~~~~~~ki~~~~ilVihDDLdlp~G 146 (207)
.+.+.++++++++.|..+|++ .+|
T Consensus 104 ~l~~~LgI~~~rvyI~f~d~~-~wg 127 (133)
T 3fwt_A 104 AITKECGIPAERIYVFYYSTK-HCG 127 (133)
T ss_dssp HHHHHHCCCGGGEEEEEEEES-CCE
T ss_pred HHHHHhCcChhhEEEEEEEhh-hEe
Confidence 344568999999999999998 666
Done!