BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 028599
         (207 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2XB3|A Chain A, The Structure Of Cyanobacterial Psbp
          Length = 165

 Score = 83.6 bits (205), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 54/178 (30%), Positives = 90/178 (50%), Gaps = 21/178 (11%)

Query: 26  GFREYIDTFDGYSFKYPQNWIQVRGAG-ADIFYRDPYVLDENVSVELXXXXXXRYKSVED 84
           G + Y+D++DGY F YP+ W+QV+     D+ + D     ENVSV +        KS+E+
Sbjct: 7   GLQAYVDSYDGYEFLYPRGWVQVQVEDPVDVVFHDIIETTENVSVVVNTVAST--KSLEE 64

Query: 85  LGPPKEAGRKVLRQYLTEFMSTRLGVRRESNILSTSSRVADDGRLYYLVEVNIKSFANNN 144
           LG P+E G ++LR  +    S      R S +++ +S+ ADD + YY++E  +       
Sbjct: 65  LGSPEEVGDRLLRNIIAPSES-----GRSSALIAATSQKADD-KTYYILEYAV------- 111

Query: 145 ELAVMPKDRVVNLEWDRRYLSVLGVENNRLYELRLQTPENVFVEEENDLRQVIDSFRV 202
               +P D   N    R  LS + V   ++Y L +  PE  + + E+  + ++ SF V
Sbjct: 112 ---TLPGDG--NTAQQRHNLSSIAVSRGKVYTLSVSAPEERWPKVEDQFKTIVSSFTV 164


>pdb|2LNJ|A Chain A, Solution Structure Of Cyanobacterial Psbp (Cyanop) From
           Synechocystis Sp. Pcc 6803
          Length = 170

 Score = 50.1 bits (118), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 57/112 (50%), Gaps = 12/112 (10%)

Query: 27  FREYIDTFDGYSFKYPQNWI--QVRGA--GADIFYRDPYVLDENVSVELXXXXXXRYKSV 82
            + Y DT DGY F YP  WI   V+GA  G D+ +RD    DEN+SV +        K++
Sbjct: 14  LQRYSDTKDGYEFLYPNGWIGVDVKGASPGVDVVFRDLIERDENLSVIISEIPSD--KTL 71

Query: 83  EDLGPPKEAGRKVLRQYLTEFMSTRLGVRRESNILSTSSRVADDGRLYYLVE 134
            DLG   + G + ++              R++ +++  +R  +DG++YY +E
Sbjct: 72  TDLGTATDVGYRFMKTVNDASQG-----DRQAELINAEAR-DEDGQVYYTLE 117


>pdb|3KUX|A Chain A, Structure Of The Ypo2259 Putative Oxidoreductase From
           Yersinia Pestis
          Length = 352

 Score = 32.3 bits (72), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 2/61 (3%)

Query: 11  SDFGFRNTALAQQSVGFREYIDT-FDGYSFKYPQNWIQVRGAGADIFYR-DPYVLDENVS 68
           SDF    T LA+ S+G   Y ++ FD Y  +  Q W +  GAG  I+Y   P++LD+ + 
Sbjct: 131 SDFLTLKTLLAEGSLGNVVYFESHFDRYRPEIRQRWREQAGAGGGIWYDLGPHLLDQALQ 190

Query: 69  V 69
           +
Sbjct: 191 L 191


>pdb|2BOL|A Chain A, Crystal Structure And Assembly Of Tsp36, A Metazoan Small
           Heat Shock Protein
 pdb|2BOL|B Chain B, Crystal Structure And Assembly Of Tsp36, A Metazoan Small
           Heat Shock Protein
          Length = 314

 Score = 27.3 bits (59), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 11/60 (18%)

Query: 97  RQYLTEFMSTRLGVRRESNILSTSSRVADDGRLYYLVEVNIKSF--------ANNNELAV 148
           R++  E   T+ G   E + L  +  V  DGRL++ V  N+K+F        A+ N+L V
Sbjct: 83  REFHPELEYTQPG---ELDFLKDAYEVGKDGRLHFKVYFNVKNFKAEEITIKADKNKLVV 139


>pdb|2D1C|A Chain A, Crystal Structure Of Tt0538 Protein From Thermus
           Thermophilus Hb8
 pdb|2D1C|B Chain B, Crystal Structure Of Tt0538 Protein From Thermus
           Thermophilus Hb8
          Length = 496

 Score = 27.3 bits (59), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 44/116 (37%), Gaps = 23/116 (19%)

Query: 36  GY-SFKYPQNWIQVRGAGADIFYRDPYVLDENVSVELXXXXXXRYKSVEDLG-------- 86
           GY  F+ PQ    V GA A I  R   V+  +V VE         K++EDL         
Sbjct: 366 GYKPFRLPQ----VDGAIAPIVPRSRRVVGVDVFVETNLLPEALGKALEDLAAGTPFRLK 421

Query: 87  ----------PPKEAGRKVLRQYLTEFMSTRLGVRRESNILSTSSRVADDGRLYYL 132
                     PP      ++  Y   F+ T  G  ++  IL   SRVA   R  +L
Sbjct: 422 MISNRGTQVYPPTGGLTDLVDHYRCRFLYTGEGEAKDPEILDLVSRVASRFRWMHL 477


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.137    0.390 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,828,406
Number of Sequences: 62578
Number of extensions: 230583
Number of successful extensions: 543
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 539
Number of HSP's gapped (non-prelim): 9
length of query: 207
length of database: 14,973,337
effective HSP length: 94
effective length of query: 113
effective length of database: 9,091,005
effective search space: 1027283565
effective search space used: 1027283565
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)