BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028599
(207 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O23403|PPD1_ARATH PsbP domain-containing protein 1, chloroplastic OS=Arabidopsis
thaliana GN=PPD1 PE=1 SV=1
Length = 287
Score = 306 bits (783), Expect = 9e-83, Method: Compositional matrix adjust.
Identities = 155/205 (75%), Positives = 177/205 (86%), Gaps = 2/205 (0%)
Query: 1 MALILSSYIFSDFGFRNTALAQQSVGFREYIDTFDGYSFKYPQNWIQVRGAGADIFYRDP 60
M L++S I S TA A V FREYIDTFDGYSFKYPQNWIQVRGAGADIF+RDP
Sbjct: 85 MGLLMSGLIVSQANL-PTAFASTPV-FREYIDTFDGYSFKYPQNWIQVRGAGADIFFRDP 142
Query: 61 YVLDENVSVELSSPSSSRYKSVEDLGPPKEAGRKVLRQYLTEFMSTRLGVRRESNILSTS 120
VLDEN+SVE SSPSSS Y S+EDLG P+E G++VLRQYLTEFMSTRLGV+R++NILSTS
Sbjct: 143 VVLDENLSVEFSSPSSSNYTSLEDLGSPEEVGKRVLRQYLTEFMSTRLGVKRQANILSTS 202
Query: 121 SRVADDGRLYYLVEVNIKSFANNNELAVMPKDRVVNLEWDRRYLSVLGVENNRLYELRLQ 180
SRVADDG+LYY VEVNIKS+ANNNELAVMP+DRV LEW+RRYL+VLGVEN+RLY +RLQ
Sbjct: 203 SRVADDGKLYYQVEVNIKSYANNNELAVMPQDRVARLEWNRRYLAVLGVENDRLYSIRLQ 262
Query: 181 TPENVFVEEENDLRQVIDSFRVNKV 205
TPE VF+EEE DLR+V+DSFRV K+
Sbjct: 263 TPEKVFLEEEKDLRRVMDSFRVEKI 287
>sp|P82538|PPL1_ARATH PsbP-like protein 1, chloroplastic OS=Arabidopsis thaliana GN=PPL1
PE=1 SV=1
Length = 230
Score = 57.0 bits (136), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 48/183 (26%), Positives = 78/183 (42%), Gaps = 28/183 (15%)
Query: 21 AQQSVGFREYIDTFDGYSFKYPQNWIQVRGAGADIFYRDPYVLDENVSVELSSPSSSRYK 80
A+ GF D D Y+F YP W +V G D Y+D E+VSV L P+S +
Sbjct: 75 AESKKGFLAVSDNKDAYAFLYPFGWQEVVIEGQDKVYKDVIEPLESVSVNL-VPTSKQ-- 131
Query: 81 SVEDLGPPKEAGRKVLRQYLTEFMSTRLGVRRESNILSTSSRVADDGRLYYLVEVNIKSF 140
++++ GPPK+ ++++ L + L +S DG+ YY E ++
Sbjct: 132 TIKEFGPPKQIAETLIKKVLAP--------PNQKTTLIDASEHDVDGKTYYQFEFTVQ-- 181
Query: 141 ANNNELAVMPKDRVVNLEWDRRYLSVLGVENNRLYELRLQTPENVFVEEENDLRQVIDSF 200
A N + R L + V N Y L E + + ++ L V+DSF
Sbjct: 182 ARN---------------YTRHALGTITVFNGNFYTLTTGANERRWEKMKDRLHTVVDSF 226
Query: 201 RVN 203
++
Sbjct: 227 KIT 229
>sp|O80634|PPL2_ARATH PsbP-like protein 2, chloroplastic OS=Arabidopsis thaliana GN=PPL2
PE=1 SV=2
Length = 238
Score = 38.9 bits (89), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 37/181 (20%), Positives = 75/181 (41%), Gaps = 32/181 (17%)
Query: 27 FREYIDTFDGYSFKYPQNWIQVRGAGADIFYRDPYVLDENVSVELSSPSSSRYKSVEDLG 86
+ ++D DGYS+ YP +W + D ++D Y+ +NV V + + ++G
Sbjct: 88 YSPFVDREDGYSYYYPSDWREFDFRAHDSAFKDRYLQLQNVRVRF---IPTEKNDIHEVG 144
Query: 87 PPKEAGRKVLRQYLTEFMSTRLGVRRESNILSTSSRVADDGRLYYLVEVNIKS--FANNN 144
P +E +++ + + I RV +DG+ YY E +++ +A +
Sbjct: 145 PMEEVVYDLVKHKFA-------APNQVATIYDMKERV-EDGKNYYTFEYGLRTPIYATTS 196
Query: 145 ELAVMPKDRVVNLEWDRRYLSVLGVENNRLYELRLQTPENVFVEEENDLRQVIDSFRVNK 204
+ + V NNR Y L + E + + + L+ V DS ++ +
Sbjct: 197 -------------------FATVAVGNNRYYTLIVGANERRWRKVKKQLQVVADSLKILQ 237
Query: 205 V 205
+
Sbjct: 238 I 238
>sp|P82337|UT019_PEA Unknown protein from spot 19 of 2D-PAGE of thylakoid (Fragments)
OS=Pisum sativum PE=1 SV=1
Length = 33
Score = 36.2 bits (82), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/25 (68%), Positives = 19/25 (76%)
Query: 129 LYYLVEVNIKSFANNNELAVMPKDR 153
LYY VE N KS+A+NNELAV P R
Sbjct: 9 LYYQVEANNKSYASNNELAVFPDQR 33
>sp|P82796|TL22_SPIOL Thylakoid lumenal 22 kDa protein (Fragment) OS=Spinacia oleracea
PE=1 SV=1
Length = 20
Score = 35.0 bits (79), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 15/20 (75%), Positives = 16/20 (80%)
Query: 22 QQSVGFREYIDTFDGYSFKY 41
+QS GFREYID FDGYS Y
Sbjct: 1 EQSAGFREYIDFFDGYSLTY 20
>sp|Q8VY52|PPD2_ARATH PsbP domain-containing protein 2, chloroplastic OS=Arabidopsis
thaliana GN=PPD2 PE=1 SV=1
Length = 232
Score = 34.7 bits (78), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 47/204 (23%), Positives = 82/204 (40%), Gaps = 32/204 (15%)
Query: 1 MALILSSYIFSDFGFRNTALAQQSVGFREYIDTFDGYSFKYPQNWIQVRGAGADIFYRDP 60
+ L + + F+ F N A + + + + Y D+ +G++ P ++ +V AGA+ + +
Sbjct: 51 LNLSILTLFFNGFLLDNKAKSMEEL--QRYTDSNNGFTLLIPSSYTKVEKAGANALFEEL 108
Query: 61 YVLDENVSVELSSPSSSRYKSVEDLGPPKEAGRKVLRQYLTEFMSTRLGVRRESNILSTS 120
N+ V + S R KS++ G P+ K++ R +E+ ++S
Sbjct: 109 NNGSNNIGVVV---SPVRIKSLDQFGSPQFVADKLIN------AEKRKESTKEAEVVSVG 159
Query: 121 SRVADDGRLYYLVEVNIKSFANNNELAVMPKDRVVNLEWDRRYLSVLGVENNRLYELRL- 179
R A G+ Y E I S +R S V +N+LY L +
Sbjct: 160 ER-AGLGQQVYEFEYKIDSTRGG----------------IKRVFSAAFVSSNKLYLLNVV 202
Query: 180 --QTPENVF-VEEENDLRQVIDSF 200
PEN L QV+ SF
Sbjct: 203 HSDKPENPLDSSTRMSLEQVLHSF 226
>sp|Q0W4I8|GLMM_UNCMA Probable phosphoglucosamine mutase OS=Uncultured methanogenic
archaeon RC-I GN=glmM PE=3 SV=1
Length = 438
Score = 31.2 bits (69), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 31 IDTFDGYSFKYPQNWIQVRGAGADIFYR-DPYVLDENVSVELSSPSSSRYKSVED 84
I+T DG +YP+ W+ +R +G + R +DE + +L S + S K D
Sbjct: 380 INTLDGVRVEYPEGWVLIRPSGTEPKIRITAEAVDEGAAEKLYSQAESIVKRCID 434
>sp|Q6BS60|POB3_DEBHA FACT complex subunit POB3 OS=Debaryomyces hansenii (strain ATCC
36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=POB3 PE=3 SV=1
Length = 540
Score = 30.8 bits (68), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 31/60 (51%), Gaps = 10/60 (16%)
Query: 122 RVADDGRLYYLVEVNIKSFANNNELAVMPKDRVVNLEWDRRYLSVLGVENNRLYELRLQT 181
R+AD G L + V + A+NN ++P + ++ +W R +R YELR+QT
Sbjct: 21 RIADSG-LGWKASVTNNASASNNAPFLLPSEEILASQWSR---------GSRGYELRVQT 70
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.135 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 75,320,771
Number of Sequences: 539616
Number of extensions: 3137542
Number of successful extensions: 7733
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 7725
Number of HSP's gapped (non-prelim): 17
length of query: 207
length of database: 191,569,459
effective HSP length: 112
effective length of query: 95
effective length of database: 131,132,467
effective search space: 12457584365
effective search space used: 12457584365
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)