Query 028599
Match_columns 207
No_of_seqs 117 out of 300
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 14:01:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028599.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028599hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00059 PsbP domain-containin 100.0 8.6E-61 1.9E-65 412.4 17.4 202 1-204 85-286 (286)
2 PF01789 PsbP: PsbP; InterPro 100.0 6.5E-43 1.4E-47 288.0 16.3 158 21-202 17-174 (175)
3 PLN00042 photosystem II oxygen 100.0 1.1E-42 2.4E-47 300.5 16.1 158 23-202 88-259 (260)
4 PLN00067 PsbP domain-containin 100.0 1.1E-37 2.5E-42 268.8 15.6 143 33-202 103-263 (263)
5 PLN00066 PsbP domain-containin 100.0 2.2E-35 4.8E-40 256.4 16.1 164 9-204 59-260 (262)
6 PLN03152 hypothetical protein; 99.9 2.4E-26 5.2E-31 194.4 13.7 137 34-203 83-241 (241)
7 PF08786 DUF1795: Domain of un 98.2 0.00016 3.6E-09 56.3 15.1 127 38-200 3-130 (130)
8 PF12712 DUF3805: Domain of un 95.1 1.5 3.2E-05 35.6 13.6 131 28-204 2-132 (153)
9 PF10738 Lpp-LpqN: Probable li 94.3 1.5 3.1E-05 36.6 12.5 132 37-203 33-174 (175)
10 COG5435 Uncharacterized conser 94.1 2.7 5.8E-05 34.2 13.7 132 38-205 10-144 (147)
11 PRK11615 hypothetical protein; 91.8 7.1 0.00015 32.9 15.4 133 34-202 47-184 (185)
12 PF07174 FAP: Fibronectin-atta 84.0 21 0.00047 32.0 11.3 105 27-137 109-229 (297)
13 COG4784 Putative Zn-dependent 61.9 21 0.00046 33.4 5.8 40 163-203 375-415 (479)
14 smart00564 PQQ beta-propeller 48.8 27 0.00058 19.8 2.9 21 167-187 11-31 (33)
15 PF08006 DUF1700: Protein of u 45.4 13 0.00027 30.5 1.5 19 81-99 46-64 (181)
16 PF10657 RC-P840_PscD: Photosy 41.0 89 0.0019 25.0 5.6 66 62-138 42-108 (144)
17 PF01011 PQQ: PQQ enzyme repea 26.6 45 0.00098 20.1 1.5 22 167-188 5-26 (38)
18 PF14202 TnpW: Transposon-enco 23.1 1.5E+02 0.0034 18.3 3.4 28 171-198 8-35 (37)
No 1
>PLN00059 PsbP domain-containing protein 1; Provisional
Probab=100.00 E-value=8.6e-61 Score=412.41 Aligned_cols=202 Identities=77% Similarity=1.215 Sum_probs=193.0
Q ss_pred CceeeccceeeccCCCcccccccCcCcceeeeCCCceEEeccCCceeeccCCcceEEeCCCCCCCcEEEEEeCCCCCCCC
Q 028599 1 MALILSSYIFSDFGFRNTALAQQSVGFREYIDTFDGYSFKYPQNWIQVRGAGADIFYRDPYVLDENVSVELSSPSSSRYK 80 (207)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~a~a~~~~g~~~~~D~~~gY~f~yP~~W~~~~~~G~dv~f~d~~~~~~nvsV~v~p~~~~~~~ 80 (207)
|+|++++.++|+.+++ .|||.++ ||+.|.|+.|||+|+||.||+++++.|+||+|||+++.+|||+|+|+|+++.+++
T Consensus 85 ~~l~~~~~~~s~~~~~-~a~a~~~-~l~~y~D~~DGY~FlYP~GWi~V~~~G~DVvFrD~Ie~~ENVSV~ISs~sss~~~ 162 (286)
T PLN00059 85 MGLLMSGLIVSEANLP-TAFASIP-VFREYIDTFDGYSFKYPQNWIQVRGAGADIFFRDPVVLDENLSVEFSSPSSSKYT 162 (286)
T ss_pred HHHHHHHHHHHhhcCc-hhhcCCc-ccceeEcCCCCeEEeCCCCCeEeccCCCceEEeccCccccceEEEEecCCcccCC
Confidence 4577899999999995 9999866 7999999999999999999999999999999999999999999999999755689
Q ss_pred CcccCCCHHHHHHHHHHHhhhhccccccCCccceeEEeceeeeeCCCeEEEEEEEEeeccccccccccCCcccccccccc
Q 028599 81 SVEDLGPPKEAGRKVLRQYLTEFMSTRLGVRRESNILSTSSRVADDGRLYYLVEVNIKSFANNNELAVMPKDRVVNLEWD 160 (207)
Q Consensus 81 sl~dlGsp~eva~~l~~~~~~~~~str~~~~~~a~ll~a~~r~~~dG~~YY~~Ey~~~~~~~~~~~~~~p~~~~~~~~~~ 160 (207)
+|+|||+|++||++|++++++++||||.|++|+++||+|++|++.||++||+|||.+++.+++||||+++.+|+|.++|.
T Consensus 163 sLeDLGsP~eVgerLlkqvLa~f~str~GsgReaeLVsA~~Re~~DGktYY~lEY~Vks~~~~n~~~~~~qdr~~~~~w~ 242 (286)
T PLN00059 163 SLEDLGSPEEVGKRVLRQYLTEFMSTRLGVKREANILSTSSRVADDGKLYYQVEVNIKSYANNNELAVMPQDRVARLEWN 242 (286)
T ss_pred ChHHcCCHHHHHHHHHHHHhcccccccCCCCcceEEEEeeeEEccCCcEEEEEEEEEEcCcccccccccccccccccccc
Confidence 99999999999999999999999999999999999999999986799999999999999999999999999999999999
Q ss_pred eEEEEEEEEECCEEEEEEeecCcccchHhhHHHHHHhcceeeee
Q 028599 161 RRYLSVLGVENNRLYELRLQTPENVFVEEENDLRQVIDSFRVNK 204 (207)
Q Consensus 161 rH~l~~vtv~~gkLYtl~~~a~e~~W~k~~~~lr~vv~SFrv~~ 204 (207)
||+|++++|.+||||||++|+||++|.|+++.|++|++||+|.+
T Consensus 243 RH~LA~v~V~nGkLYTL~~qtpE~RW~kvk~~f~~V~dSF~V~~ 286 (286)
T PLN00059 243 RRYLAVLGVENDRLYSIRLQTPEKVFLEEEKDLRRVMDSFRVEK 286 (286)
T ss_pred eeeEEEEEEeCCEEEEEEcCCcHHHHHHHHHHHHHHHhheeecC
Confidence 99999999999999999999999999999999999999999974
No 2
>PF01789 PsbP: PsbP; InterPro: IPR002683 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. In PSII, the oxygen-evolving complex (OEC) is responsible for catalysing the splitting of water to O(2) and 4H+. The OEC is composed of a cluster of manganese, calcium and chloride ions bound to extrinsic proteins. In cyanobacteria there are five extrinsic proteins in OEC (PsbO, PsbP-like, PsbQ-like, PsbU and PsbV), while in plants there are only three (PsbO, PsbP and PsbQ), PsbU and PsbV having been lost during the evolution of green plants []. This family represents the PSII OEC protein PsbP. Both PsbP and PsbQ (IPR008797 from INTERPRO) are regulators that are necessary for the biogenesis of optically active PSII. PsbP increases the affinity of the water oxidation site for chloride ions and provides the conditions required for high affinity binding of calcium ions [, ]. The crystal structure of PsbP from Nicotiana tabacum (Common tobacco) revealed a two-domain structure, where domain 1 may play a role in the ion retention activity in PSII, the N-terminal residues being essential for calcium and chloride ion retention activity []. PsbP is encoded in the nuclear genome in plants.; GO: 0005509 calcium ion binding, 0015979 photosynthesis, 0009523 photosystem II, 0009654 oxygen evolving complex, 0019898 extrinsic to membrane; PDB: 2VU4_A 1V2B_A 2LNJ_A 2XB3_A.
Probab=100.00 E-value=6.5e-43 Score=288.04 Aligned_cols=158 Identities=44% Similarity=0.718 Sum_probs=141.2
Q ss_pred cccCcCcceeeeCCCceEEeccCCceeeccCCcceEEeCCCCCCCcEEEEEeCCCCCCCCCcccCCCHHHHHHHHHHHhh
Q 028599 21 AQQSVGFREYIDTFDGYSFKYPQNWIQVRGAGADIFYRDPYVLDENVSVELSSPSSSRYKSVEDLGPPKEAGRKVLRQYL 100 (207)
Q Consensus 21 a~~~~g~~~~~D~~~gY~f~yP~~W~~~~~~G~dv~f~d~~~~~~nvsV~v~p~~~~~~~sl~dlGsp~eva~~l~~~~~ 100 (207)
+.++.||++|.|+.++|+|.||++|+++++.|+|++|+||.+..+||+|+|+|++. ..+|+|||+|++||++|++..+
T Consensus 17 ~~~~~~~~~y~d~~~~y~f~~P~gW~~~~~~G~~v~f~d~~~~~~nvsV~v~p~~~--~~sl~~lGs~~~va~~l~~~~~ 94 (175)
T PF01789_consen 17 AEASTGFQPYTDSDDGYSFLYPSGWEEVDVSGADVVFRDPIDADENVSVVVSPVPK--DFSLEDLGSPEEVAERLLNGEL 94 (175)
T ss_dssp TT--SSEEEEEECTTTEEEEEETTEEEEESTTEEEEEEETTETTSEEEEEEEE-ST--S-SGGGG-SHHHHHHHHHHHCC
T ss_pred ccCCCCceEEEcCCCCEEEECCCCCeecCCCCeEEEEECcccccceEEEEEEecCC--cCchhhcCCHHHHHHHHhhhhc
Confidence 45788999999999999999999999999999999999999999999999999964 4499999999999999999887
Q ss_pred hhccccccCCccceeEEeceeeeeCCCeEEEEEEEEeeccccccccccCCcccccccccceEEEEEEEEECCEEEEEEee
Q 028599 101 TEFMSTRLGVRRESNILSTSSRVADDGRLYYLVEVNIKSFANNNELAVMPKDRVVNLEWDRRYLSVLGVENNRLYELRLQ 180 (207)
Q Consensus 101 ~~~~str~~~~~~a~ll~a~~r~~~dG~~YY~~Ey~~~~~~~~~~~~~~p~~~~~~~~~~rH~l~~vtv~~gkLYtl~~~ 180 (207)
+++ ++++.++||++.+|+ .+|++||+|||.++. |+ ++.||+|+++++.+||||+|++|
T Consensus 95 ~~~-----~~~~~a~li~a~~~~-~~g~~yY~~Ey~~~~----------~~------~~~rh~l~~~tv~~g~lY~l~~~ 152 (175)
T PF01789_consen 95 ASP-----GSGREAELISASERE-VDGKTYYEYEYTVQS----------PN------EGRRHNLAVVTVKNGKLYTLTAQ 152 (175)
T ss_dssp CHC-----TSSEEEEEEEEEEEE-ETTEEEEEEEEEEEE----------TT------EEEEEEEEEEEEETTEEEEEEEE
T ss_pred ccc-----cCCcceEEEEeeeee-cCCccEEEEEEEecc----------CC------CcccEEEEEEEEECCEEEEEEEE
Confidence 773 445889999999999 689999999999987 33 37999999999999999999999
Q ss_pred cCcccchHhhHHHHHHhcceee
Q 028599 181 TPENVFVEEENDLRQVIDSFRV 202 (207)
Q Consensus 181 a~e~~W~k~~~~lr~vv~SFrv 202 (207)
|+|++|+++++.|++|++||+|
T Consensus 153 a~e~~w~k~~~~l~~iv~SF~v 174 (175)
T PF01789_consen 153 APESRWDKVEPKLRKIVDSFRV 174 (175)
T ss_dssp EEHHHHHTCHHHHHHHHHC-EE
T ss_pred cCHHHHHHHHHHHHHHHhcEEe
Confidence 9999999999999999999998
No 3
>PLN00042 photosystem II oxygen-evolving enhancer protein 2; Provisional
Probab=100.00 E-value=1.1e-42 Score=300.51 Aligned_cols=158 Identities=22% Similarity=0.336 Sum_probs=136.9
Q ss_pred cCcCcceeeeCCCceEEeccCCceeec---cCCcceEEeCCCCCCCcEEEEEeCCCCCCCCCcccCCCHHH----HHHHH
Q 028599 23 QSVGFREYIDTFDGYSFKYPQNWIQVR---GAGADIFYRDPYVLDENVSVELSSPSSSRYKSVEDLGPPKE----AGRKV 95 (207)
Q Consensus 23 ~~~g~~~~~D~~~gY~f~yP~~W~~~~---~~G~dv~f~d~~~~~~nvsV~v~p~~~~~~~sl~dlGsp~e----va~~l 95 (207)
...||.+|. .|||+|+||.+|++++ .+|+|++|+|+++..+||+|+|+|+. +++|+|||+|++ |++.|
T Consensus 88 ~~~gF~~y~--~dgY~FlyP~~W~~~ke~~~~G~dv~f~D~~~~~eNVSV~Ispt~---k~sI~dlGsPee~l~~vgylL 162 (260)
T PLN00042 88 TNTGFLPYN--GDGFKLLVPSKWNPSKEREFPGQVLRFEDNFDATSNLSVMVTPTD---KKSITDYGSPEEFLSKVSYLL 162 (260)
T ss_pred CCCCCeEee--CCCeEEecCCCCccccccccCCceEEeeccccccccEEEEEecCC---cCCHhhcCCHHHHHHHHHHHH
Confidence 378999996 5999999999999665 45999999999999999999999983 589999999999 66667
Q ss_pred HHHhhhhccccccCCcc------ceeEEeceeeeeCCCeEEEEEEEEeeccccccccccCCcccccccccceEEEEEEEE
Q 028599 96 LRQYLTEFMSTRLGVRR------ESNILSTSSRVADDGRLYYLVEVNIKSFANNNELAVMPKDRVVNLEWDRRYLSVLGV 169 (207)
Q Consensus 96 ~~~~~~~~~str~~~~~------~a~ll~a~~r~~~dG~~YY~~Ey~~~~~~~~~~~~~~p~~~~~~~~~~rH~l~~vtv 169 (207)
.++.+.+. |+.+.|+ .++||++++|+ .||++||+|||.++. |++ ++++||+|+++||
T Consensus 163 ~kq~~a~~--t~s~~Gf~p~~vata~Lleas~re-~dGk~YY~lE~~~~~----------ad~----d~~~RH~LatatV 225 (260)
T PLN00042 163 GKQAYSGE--TASEGGFDANAVATAAVLESSTQE-VGGKPYYYLSVLTRT----------ADG----DEGGKHQLITATV 225 (260)
T ss_pred HhhhccCc--cccccCcCcccccceeEEEeeeEE-eCCeEEEEEEEEEec----------CCC----CCCCceEEEEEEE
Confidence 77776652 3233343 68999999998 799999999999987 553 4689999999999
Q ss_pred ECCEEEEEEeecCcccchHh-hHHHHHHhcceee
Q 028599 170 ENNRLYELRLQTPENVFVEE-ENDLRQVIDSFRV 202 (207)
Q Consensus 170 ~~gkLYtl~~~a~e~~W~k~-~~~lr~vv~SFrv 202 (207)
.+||||||++|+||+||.|+ ++.|++|++||+|
T Consensus 226 ~~GkLYtl~aqa~EkRW~K~~~k~l~~v~~SFsV 259 (260)
T PLN00042 226 SDGKLYICKAQAGDKRWFKGARKFVEGAASSFSV 259 (260)
T ss_pred ECCEEEEEEecCchhhhhHHHHHHHHHHHhceec
Confidence 99999999999999999998 6689999999997
No 4
>PLN00067 PsbP domain-containing protein 6; Provisional
Probab=100.00 E-value=1.1e-37 Score=268.85 Aligned_cols=143 Identities=19% Similarity=0.287 Sum_probs=127.7
Q ss_pred CCCceEEeccCCceeeccC----C-----------cceEEeCCCCCCCcEEEEEeCCCC---CCCCCcccCCCHHHHHHH
Q 028599 33 TFDGYSFKYPQNWIQVRGA----G-----------ADIFYRDPYVLDENVSVELSSPSS---SRYKSVEDLGPPKEAGRK 94 (207)
Q Consensus 33 ~~~gY~f~yP~~W~~~~~~----G-----------~dv~f~d~~~~~~nvsV~v~p~~~---~~~~sl~dlGsp~eva~~ 94 (207)
...||+|+||.+|++++++ | +|++|+|.. ++||+|+|+|+.. +++++|+|||+|++|+++
T Consensus 103 ~i~gY~FlyP~gW~~v~Vs~~~sGnycqp~c~~p~~dv~F~D~~--dgnVSVIVSPV~r~t~k~~~sIeDlGsPeeVl~~ 180 (263)
T PLN00067 103 NVQPYQFILPPTWKQTRVANILSGNYCQPKCAEPWVEVKFEDEK--QGKVQVVASPLIRLTNKPNATIEEIGSPEKLIAS 180 (263)
T ss_pred CcccceEeCCCCCcCccccccccCccccccccCCCceEEEeCCC--CCCEEEEEecccccccCCCCChHHccCHHHHHHH
Confidence 3468999999999999986 5 799999954 7899999999842 357899999999999999
Q ss_pred HHHHhhhhccccccCCccceeEEeceeeeeCCCeEEEEEEEEeeccccccccccCCcccccccccceEEEEEEEEECCEE
Q 028599 95 VLRQYLTEFMSTRLGVRRESNILSTSSRVADDGRLYYLVEVNIKSFANNNELAVMPKDRVVNLEWDRRYLSVLGVENNRL 174 (207)
Q Consensus 95 l~~~~~~~~~str~~~~~~a~ll~a~~r~~~dG~~YY~~Ey~~~~~~~~~~~~~~p~~~~~~~~~~rH~l~~vtv~~gkL 174 (207)
|.+...+. ++++++||++++|+ .||++||+|||.++. + .++||+|+++|+++|+|
T Consensus 181 Lg~~v~g~-------~~~~~eLLeAs~re-~dGktYY~~E~~tp~----------a-------~~gRHnLataTV~~GkL 235 (263)
T PLN00067 181 LGPFVTGN-------SYDPDELLETSVEK-IGDQTYYKYVLETPF----------A-------LTGSHNLAKATAKGNTV 235 (263)
T ss_pred hhHHhhcC-------CCCCcceEEeeeEe-eCCeEEEEEEEEecC----------C-------CCCceEEEEEEEECCEE
Confidence 98877653 46788999999999 799999999999876 3 37999999999999999
Q ss_pred EEEEeecCcccchHhhHHHHHHhcceee
Q 028599 175 YELRLQTPENVFVEEENDLRQVIDSFRV 202 (207)
Q Consensus 175 Ytl~~~a~e~~W~k~~~~lr~vv~SFrv 202 (207)
|||++|++|+||.|+++.|++|++||+|
T Consensus 236 Ytf~asanEkRW~K~k~~l~~V~dSFsV 263 (263)
T PLN00067 236 VLFVVSASDKQWQSSEKTLKAILDSFQA 263 (263)
T ss_pred EEEEecCCHHHHHHHHHHHHHHHHhccC
Confidence 9999999999999999999999999986
No 5
>PLN00066 PsbP domain-containing protein 4; Provisional
Probab=100.00 E-value=2.2e-35 Score=256.42 Aligned_cols=164 Identities=25% Similarity=0.372 Sum_probs=137.7
Q ss_pred eeeccCCCcccccc---------------cCcCcceeeeCC-------------CceEEeccCCceeeccC-----Ccce
Q 028599 9 IFSDFGFRNTALAQ---------------QSVGFREYIDTF-------------DGYSFKYPQNWIQVRGA-----GADI 55 (207)
Q Consensus 9 ~~~~~~~~~~a~a~---------------~~~g~~~~~D~~-------------~gY~f~yP~~W~~~~~~-----G~dv 55 (207)
++.++|+|+.++|. ...||+.|..+. .+|+|+||.+|+++.++ |+++
T Consensus 59 ~~~~~~~~~~~~a~~~g~~ag~~~~~s~~~~~g~~~~~rp~~~~Gg~G~~~~~i~~Y~F~yP~GW~ev~VS~~d~gg~~v 138 (262)
T PLN00066 59 SSAVLAFPGEGLAVKQGLLAGRVPGLSEPDENGWRTYRRPEGKSGGHGVGWSEITPYSFKVPQGWEEVPVSIADLGGTEI 138 (262)
T ss_pred hhhhhcCCcchhhhhhcccccCCCCCCCccccceEEEecCccccCcCCCCccccCCeEEECCCCCeEeecccccCCCCce
Confidence 44456666666632 224577776544 57999999999999997 7777
Q ss_pred EEeCCCCCCCcEEEEEeCCC-----CCCCCCcccCCCHHHHHHHHHHHhhhhccccccCCccceeEEeceeeeeCCCeEE
Q 028599 56 FYRDPYVLDENVSVELSSPS-----SSRYKSVEDLGPPKEAGRKVLRQYLTEFMSTRLGVRRESNILSTSSRVADDGRLY 130 (207)
Q Consensus 56 ~f~d~~~~~~nvsV~v~p~~-----~~~~~sl~dlGsp~eva~~l~~~~~~~~~str~~~~~~a~ll~a~~r~~~dG~~Y 130 (207)
.+++..+.++||+|+|+|++ .+++++|+|||+|++|++.|++++++.. .++++|+++++++ .||++|
T Consensus 139 d~Rf~~~~~~nvsVvVspv~rla~~~~~~~sI~dLGspeeVi~~l~~~v~g~~-------~~e~eLl~a~~re-~dGktY 210 (262)
T PLN00066 139 DLRFASDKEGRLKVVVAPVLRFADNLGDNATIEEIGPPEKVISGFGPELIGEP-------VEEGKVLSMEVAE-HSGRTY 210 (262)
T ss_pred EEEeccCCCccEEEEEeccccccccccCCCChHHcCCHHHHHHHHHHHhcCCC-------ccccceeEeeeee-cCCcEE
Confidence 77777778999999999985 1258999999999999999999876652 3688999999988 799999
Q ss_pred EEEEEEeeccccccccccCCcccccccccceEEEEEEEEECCEEEEEEeecCcccchHhhHHHHHHhcceeeee
Q 028599 131 YLVEVNIKSFANNNELAVMPKDRVVNLEWDRRYLSVLGVENNRLYELRLQTPENVFVEEENDLRQVIDSFRVNK 204 (207)
Q Consensus 131 Y~~Ey~~~~~~~~~~~~~~p~~~~~~~~~~rH~l~~vtv~~gkLYtl~~~a~e~~W~k~~~~lr~vv~SFrv~~ 204 (207)
|+||| . ||+|+++||.+||||||++|+||+||.|+++.|++|++||+|+.
T Consensus 211 Y~~E~---~---------------------rH~LasaTV~~GrLYt~~asape~rW~k~~~~lr~v~dSF~V~~ 260 (262)
T PLN00066 211 YQFEL---P---------------------PHTLVTATAAGNRVYIFSVTANGLQWKRHYKDLKRIAKSFRVVT 260 (262)
T ss_pred EEEEE---e---------------------CceEEEEEEECCEEEEEEeecchHhhHHHHHHHHHHhhceeeec
Confidence 99999 2 49999999999999999999999999999999999999999964
No 6
>PLN03152 hypothetical protein; Provisional
Probab=99.94 E-value=2.4e-26 Score=194.38 Aligned_cols=137 Identities=23% Similarity=0.274 Sum_probs=108.3
Q ss_pred CCceEEeccCCceeeccC----------Cc-------ceEEeCCCCCCCcEEEEEeCCC-----CCCCCCcccCCCHHHH
Q 028599 34 FDGYSFKYPQNWIQVRGA----------GA-------DIFYRDPYVLDENVSVELSSPS-----SSRYKSVEDLGPPKEA 91 (207)
Q Consensus 34 ~~gY~f~yP~~W~~~~~~----------G~-------dv~f~d~~~~~~nvsV~v~p~~-----~~~~~sl~dlGsp~ev 91 (207)
.+||++-||..+...-.+ |. .++|..| +..|||||+|+|++ --+.++|.|||+|+||
T Consensus 83 g~gf~~~~pp~f~di~e~~~~~~g~~~yg~~akp~~~~aRf~s~-D~sEnVSVVIspv~~LK~tfle~kDLtDLGsp~EV 161 (241)
T PLN03152 83 GDGFSIRVPPSFEDIMEPEDYNAGLSLYGDKAKPRTFAARFASP-DGSEVLSVVIRPSNQLKITFLEAKDITDLGSLKEA 161 (241)
T ss_pred CCceEEeCCCChhhhcChhhcccccceecCCCCCcceeeeecCC-CCCceEEEEEecCccccccccccCChhHcCCHHHH
Confidence 689999999987754321 21 3678777 57999999999985 0137999999999999
Q ss_pred HHHHHHHhhhhccccccCCccceeEEeceeeeeCCCeEEEEEEEEeeccccccccccCCcccccccccceEEEEEEEEEC
Q 028599 92 GRKVLRQYLTEFMSTRLGVRRESNILSTSSRVADDGRLYYLVEVNIKSFANNNELAVMPKDRVVNLEWDRRYLSVLGVEN 171 (207)
Q Consensus 92 a~~l~~~~~~~~~str~~~~~~a~ll~a~~r~~~dG~~YY~~Ey~~~~~~~~~~~~~~p~~~~~~~~~~rH~l~~vtv~~ 171 (207)
|+.++ +...++ -+++.+++ +++ .||++||.|||.+ ..||.|++++|.+
T Consensus 162 gkv~v-----P~g~~~-~saR~iel----~~E-~dGKtYY~lEy~v---------------------~~RH~LaTVaVsr 209 (241)
T PLN03152 162 AKIFV-----PGGATL-YSARTIKV----KEE-EGIRTYYFYEFGR---------------------DEQHVALVATVNS 209 (241)
T ss_pred HHhhC-----CCcccc-cccceeee----eee-cCCceeEEEEEEe---------------------CCcEEEEEEEEcC
Confidence 97654 310000 02344444 445 7999999999997 2699999999999
Q ss_pred CEEEEEEeecCcccchHhhHHHHHHhcceeee
Q 028599 172 NRLYELRLQTPENVFVEEENDLRQVIDSFRVN 203 (207)
Q Consensus 172 gkLYtl~~~a~e~~W~k~~~~lr~vv~SFrv~ 203 (207)
||||||+++++|+||+|++++|+++++||.|+
T Consensus 210 GKLYTl~aSt~EkRW~Kvk~kfr~aa~SFsV~ 241 (241)
T PLN03152 210 GKAYIAGATAPESKWDDDGVKLRSAAISLTVL 241 (241)
T ss_pred CeEEEEecCCchhchHHHHHHHHHHHhheeeC
Confidence 99999999999999999999999999999985
No 7
>PF08786 DUF1795: Domain of unknown function (DUF1795); InterPro: IPR014894 This is a bacterial protein of unknown function. It forms an antiparallel beta sheet structure and contains some alpha helical regions. ; PDB: 1TU1_A 3LYD_A.
Probab=98.17 E-value=0.00016 Score=56.28 Aligned_cols=127 Identities=12% Similarity=0.086 Sum_probs=83.1
Q ss_pred EEeccCCceeeccCCcceEEeCCCCCCCcEEEEEeCCCCCCCCCcccCCCHHHHHHHHHHHhhhhccccccCCccceeEE
Q 028599 38 SFKYPQNWIQVRGAGADIFYRDPYVLDENVSVELSSPSSSRYKSVEDLGPPKEAGRKVLRQYLTEFMSTRLGVRRESNIL 117 (207)
Q Consensus 38 ~f~yP~~W~~~~~~G~dv~f~d~~~~~~nvsV~v~p~~~~~~~sl~dlGsp~eva~~l~~~~~~~~~str~~~~~~a~ll 117 (207)
+|..|.+|..... +-..+.++....-|+.|+-.+++. =.+.++...+.++..-.. -..-+++
T Consensus 3 ~~~lP~~~~D~t~--nv~~~~~~~~~~~slvIsR~~l~~--------g~tl~~~~~~q~~~l~~~--------l~~~~~~ 64 (130)
T PF08786_consen 3 SLTLPDGWQDRTM--NVLVLPDSGGSGPSLVISRDPLPD--------GETLEDYLQRQLAQLRKQ--------LPGFQLV 64 (130)
T ss_dssp EEEEETTSEE--B--EEEEE--BTTB-EEEEEEEE---T--------TS-HHHHHHHHHHHHHCC--------STT-EEE
T ss_pred eEeCCCcceeceE--EEEEccCCCCCcceEEEEeccCCC--------CCCHHHHHHHHHHHHHhh--------CCCcEEE
Confidence 5788999998654 223344443334466666556543 135666777766654221 1245566
Q ss_pred eceeeeeCCCeEEEEEEEEeeccccccccccCCcccccccccceEEEEEEEEEC-CEEEEEEeecCcccchHhhHHHHHH
Q 028599 118 STSSRVADDGRLYYLVEVNIKSFANNNELAVMPKDRVVNLEWDRRYLSVLGVEN-NRLYELRLQTPENVFVEEENDLRQV 196 (207)
Q Consensus 118 ~a~~r~~~dG~~YY~~Ey~~~~~~~~~~~~~~p~~~~~~~~~~rH~l~~vtv~~-gkLYtl~~~a~e~~W~k~~~~lr~v 196 (207)
+...-. .+|.+-+.++|.-.. . ...-|..-++...+ ++|++|+.+++....++.++.++.+
T Consensus 65 ~~~~~~-l~~~~a~~l~~~~~~----------~-------g~~v~Q~q~~~~~~~~~~l~~T~t~~~~~~~~~~~~~~~i 126 (130)
T PF08786_consen 65 ERQPIT-LGGRPARELEYSFRS----------G-------GQPVYQRQAAVLLPGRRVLVFTYTAPGPFTEEQRAHWEAI 126 (130)
T ss_dssp EEEEEE-ETTEEEEEEEEEEEE----------T-------TCEEEEEEEEEEEC-CCEEEEEEEEECCCHHHHHHHHHHH
T ss_pred eeEEEE-eCCCCeEEEEEEEee----------C-------CEEEEEEEEEEEECCCEEEEEEEEcCCCCCHHHHHHHHHH
Confidence 654444 689999999998875 2 25678888888887 9999999999999999999999999
Q ss_pred hcce
Q 028599 197 IDSF 200 (207)
Q Consensus 197 v~SF 200 (207)
++||
T Consensus 127 ~~Sf 130 (130)
T PF08786_consen 127 LKSF 130 (130)
T ss_dssp HCT-
T ss_pred HhcC
Confidence 9998
No 8
>PF12712 DUF3805: Domain of unknown function (DUF3805); InterPro: IPR024315 This entry represents an N-terminal domain found in a family of bacterial proteins, whose function is unknown. In two related Bacteroides species, the gene for members of this family lies immediately upstream from a putative ATP binding component of an ATP transporter and a putative histidinol phosphatase. The structure of this domain is strikingly similar to the N-terminal structure of 1tui, also of unknown function. The domain carries four conserved tryptophan residues.; PDB: 3HLZ_A.
Probab=95.09 E-value=1.5 Score=35.55 Aligned_cols=131 Identities=17% Similarity=0.334 Sum_probs=63.0
Q ss_pred ceeeeCCCceEEeccCCceeeccCCcceEEeCCCCCCCcEEEEEeCCCCCCCCCcccCCCHHHHHHHHHHHhhhhccccc
Q 028599 28 REYIDTFDGYSFKYPQNWIQVRGAGADIFYRDPYVLDENVSVELSSPSSSRYKSVEDLGPPKEAGRKVLRQYLTEFMSTR 107 (207)
Q Consensus 28 ~~~~D~~~gY~f~yP~~W~~~~~~G~dv~f~d~~~~~~nvsV~v~p~~~~~~~sl~dlGsp~eva~~l~~~~~~~~~str 107 (207)
+-|..+..=|++.||.+|.|......-..|.||..=.+|..++.-. + ++- .-|+..+.+.+..
T Consensus 2 kKfiSpg~WFS~~YP~~W~EfED~E~sflFYnp~~WTGNfRISayk--~------~~~----~ygk~~i~~EL~e----- 64 (153)
T PF12712_consen 2 KKFISPGAWFSMEYPADWNEFEDGEGSFLFYNPDQWTGNFRISAYK--G------GSA----QYGKECIRQELKE----- 64 (153)
T ss_dssp EEEE-GGG-EEEEE-TT-EEE---TTEEEEE-SSS---EEEEEEEE----------ST----THHHHHHHHHHHH-----
T ss_pred CcccCCCceEEEecCCCcchhccCCcceEEEChHHhcCceEEEEEe--c------ccc----cchHHHHHHHHHh-----
Confidence 4466666679999999999988433446799999888898666442 1 111 2344455555544
Q ss_pred cCCccceeEEeceeeeeCCCeEEEEEEEEeeccccccccccCCcccccccccceEEEEEEEEECCEEEEEEeecCcccch
Q 028599 108 LGVRRESNILSTSSRVADDGRLYYLVEVNIKSFANNNELAVMPKDRVVNLEWDRRYLSVLGVENNRLYELRLQTPENVFV 187 (207)
Q Consensus 108 ~~~~~~a~ll~a~~r~~~dG~~YY~~Ey~~~~~~~~~~~~~~p~~~~~~~~~~rH~l~~vtv~~gkLYtl~~~a~e~~W~ 187 (207)
++.+.++.... ..--|.-|..-.. + ..+.-|. .++-.++..|.+..+.+-.
T Consensus 65 ---n~~a~~vkvg~-----~~caYs~E~f~ee------------g----~~YtsH~--Wvtg~~~~sfeCSFTv~kg--- 115 (153)
T PF12712_consen 65 ---NPSAKLVKVGN-----WECAYSKEMFQEE------------G----AYYTSHL--WVTGEGDVSFECSFTVPKG--- 115 (153)
T ss_dssp ----TT-EEEEETT-----EEEEEEEEEEEET------------T----EEEEEEE--EEEEETTEEEEEEEEEETT---
T ss_pred ---CCCcceEEecc-----EEEEEEhhhhhcc------------C----eeEEEEE--EEEecCceEEEEEEEccCC---
Confidence 12333443322 1223333333221 0 0112243 3566788899888887654
Q ss_pred HhhHHHHHHhcceeeee
Q 028599 188 EEENDLRQVIDSFRVNK 204 (207)
Q Consensus 188 k~~~~lr~vv~SFrv~~ 204 (207)
......+.|+.|..|.+
T Consensus 116 ~~~~~aE~iiasL~vR~ 132 (153)
T PF12712_consen 116 ESVKEAEEIIASLEVRK 132 (153)
T ss_dssp ---HHHHHHHHH-EE--
T ss_pred CCcchHHHHHhhheehh
Confidence 33455677788877753
No 9
>PF10738 Lpp-LpqN: Probable lipoprotein LpqN; InterPro: IPR019674 This protein is conserved in Mycobacteriaceae and is likely to be a lipoprotein [].
Probab=94.32 E-value=1.5 Score=36.64 Aligned_cols=132 Identities=17% Similarity=0.121 Sum_probs=75.2
Q ss_pred eEEeccCCceeeccCCc---ceEEeCC-C--CCCCcEEEEEeCCCCCCCCCcccCCCHHHHHHHHHHHhhhhccccccCC
Q 028599 37 YSFKYPQNWIQVRGAGA---DIFYRDP-Y--VLDENVSVELSSPSSSRYKSVEDLGPPKEAGRKVLRQYLTEFMSTRLGV 110 (207)
Q Consensus 37 Y~f~yP~~W~~~~~~G~---dv~f~d~-~--~~~~nvsV~v~p~~~~~~~sl~dlGsp~eva~~l~~~~~~~~~str~~~ 110 (207)
-++-.|.||........ -....++ . ...-|+.|+|..+.+ +|- |+++.+.=-.+....
T Consensus 33 v~lP~P~GW~~~~~~~~~~a~~vi~~~~~~~~~~Pnavv~V~kL~G-------~~D-p~e~l~~a~~d~~~l-------- 96 (175)
T PF10738_consen 33 VSLPTPPGWEPAPDPNPPWAYAVIVDPQADGGFPPNAVVTVSKLTG-------DFD-PAEALEHAPADAQNL-------- 96 (175)
T ss_pred EeccCCcCcccCCCCCCCceEEEEEeccccCCCCCceEEEEEeccC-------CCC-HHHHHHhchhhHhhC--------
Confidence 56677899999765432 1222222 2 233588888888753 443 555554311111110
Q ss_pred ccceeEEeceeeeeCCCeEEEEEEEEeeccccccccccCCcccccccccceEEEEEEEE--ECC--EEEEEEeecCcccc
Q 028599 111 RRESNILSTSSRVADDGRLYYLVEVNIKSFANNNELAVMPKDRVVNLEWDRRYLSVLGV--ENN--RLYELRLQTPENVF 186 (207)
Q Consensus 111 ~~~a~ll~a~~r~~~dG~~YY~~Ey~~~~~~~~~~~~~~p~~~~~~~~~~rH~l~~vtv--~~g--kLYtl~~~a~e~~W 186 (207)
...+-++++.-+ .+|-+=+.+|-.-+. .+ ..+|......| .++ +|..|++++.+.+=
T Consensus 97 -~g~~~~~~s~~~-~~GfpS~~i~GtY~~----------~g-------~~~~~~~r~VV~~~~~~~Ylvqltvt~~~~qa 157 (175)
T PF10738_consen 97 -PGFRELDGSPSD-FSGFPSSQIEGTYDK----------DG-------MRLHTSQRTVVIPGDDQRYLVQLTVTTTADQA 157 (175)
T ss_pred -cCcccccCCccc-cCCCceeEEEEEEee----------CC-------EEeEeEEEEEEEeCCCcEEEEEEEeeccccch
Confidence 012234443333 688877877733322 11 22333322222 233 67778888999999
Q ss_pred hHhhHHHHHHhcceeee
Q 028599 187 VEEENDLRQVIDSFRVN 203 (207)
Q Consensus 187 ~k~~~~lr~vv~SFrv~ 203 (207)
....+..+.|++.|+|.
T Consensus 158 ~~~~~a~~aI~~g~~It 174 (175)
T PF10738_consen 158 VALADATEAIDEGFTIT 174 (175)
T ss_pred hhhhhHHHHHHcCCEec
Confidence 99999999999999985
No 10
>COG5435 Uncharacterized conserved protein [Function unknown]
Probab=94.10 E-value=2.7 Score=34.25 Aligned_cols=132 Identities=18% Similarity=0.146 Sum_probs=77.1
Q ss_pred EEeccCCceeeccCCcceEEeCCCCCCCcEEEEEe--CCCCCCCCCcccCCCHHHHHHHHHHHhhhhccccccCCcccee
Q 028599 38 SFKYPQNWIQVRGAGADIFYRDPYVLDENVSVELS--SPSSSRYKSVEDLGPPKEAGRKVLRQYLTEFMSTRLGVRRESN 115 (207)
Q Consensus 38 ~f~yP~~W~~~~~~G~dv~f~d~~~~~~nvsV~v~--p~~~~~~~sl~dlGsp~eva~~l~~~~~~~~~str~~~~~~a~ 115 (207)
.|..|+.|.-..+. ...+.++. ..-++.+|+ |+.. +=..+ +...+.+..+-.. .+ .-+
T Consensus 10 ~l~lP~~w~DrSvN--vf~~~~~g--t~~~sfvIsRd~~~~-------g~~~~-~y~~rql~~l~k~-----Lp---gy~ 69 (147)
T COG5435 10 TLELPAAWQDRSVN--VFVSGDNG--TSGFSFVISRDPLEP-------GDTFP-EYVQRQLALLRKQ-----LP---GYE 69 (147)
T ss_pred eEcCcchhccceEE--EEEecCCC--cceeEEEEecCCCCC-------CCcHH-HHHHHHHHHHHhh-----CC---CeE
Confidence 57889999865541 12233443 344555555 3322 11222 3444433332221 11 123
Q ss_pred EEeceeeeeCCCeEEEEEEEEeeccccccccccCCccccccccc-ceEEEEEEEEECCEEEEEEeecCcccchHhhHHHH
Q 028599 116 ILSTSSRVADDGRLYYLVEVNIKSFANNNELAVMPKDRVVNLEW-DRRYLSVLGVENNRLYELRLQTPENVFVEEENDLR 194 (207)
Q Consensus 116 ll~a~~r~~~dG~~YY~~Ey~~~~~~~~~~~~~~p~~~~~~~~~-~rH~l~~vtv~~gkLYtl~~~a~e~~W~k~~~~lr 194 (207)
+..-.+-. .+|..-...+|.-.+ |. .++ .-|.+.++.-+++++-+|+++++..-=++.++...
T Consensus 70 ~~~~~e~~-v~~~aa~~~~y~w~~----------~~-----~~~r~v~q~~~~i~~g~~vLifT~Tt~~~ftp~q~~~~~ 133 (147)
T COG5435 70 LHHRREIE-VGGAAAPLLDYQWTS----------PE-----GEQRRVQQRQVFIERGDTVLIFTLTTPGEFTPSQKKAWE 133 (147)
T ss_pred Eeeccccc-cCccccceeEEEeec----------CC-----CCCceEEEEEeecccCCeEEEEEecCCCCCCHHHHHHHH
Confidence 33333222 577777777776654 21 123 34555555556789999999999999999999999
Q ss_pred HHhcceeeeee
Q 028599 195 QVIDSFRVNKV 205 (207)
Q Consensus 195 ~vv~SFrv~~~ 205 (207)
++++||...+-
T Consensus 134 ~~I~Sf~p~~~ 144 (147)
T COG5435 134 QVIQSFVPNPP 144 (147)
T ss_pred HHHHhcCCCCC
Confidence 99999987653
No 11
>PRK11615 hypothetical protein; Provisional
Probab=91.81 E-value=7.1 Score=32.90 Aligned_cols=133 Identities=14% Similarity=0.205 Sum_probs=85.3
Q ss_pred CCceEEeccCCceeeccC-Cc----ceEEeCCCCCCCcEEEEEeCCCCCCCCCcccCCCHHHHHHHHHHHhhhhcccccc
Q 028599 34 FDGYSFKYPQNWIQVRGA-GA----DIFYRDPYVLDENVSVELSSPSSSRYKSVEDLGPPKEAGRKVLRQYLTEFMSTRL 108 (207)
Q Consensus 34 ~~gY~f~yP~~W~~~~~~-G~----dv~f~d~~~~~~nvsV~v~p~~~~~~~sl~dlGsp~eva~~l~~~~~~~~~str~ 108 (207)
..+.+|..|.++...... |+ --+|-|+. ...+-++|.+. .+-++ .+..+.+|.++-.+.
T Consensus 47 dGKl~FtLPag~sdqsgk~Gtq~nn~~vYad~t--g~kavIVi~gD-----~~~~~---Ld~la~rl~~qQr~r------ 110 (185)
T PRK11615 47 DGKLSFTLPADMSDQSGKLGTQANNMHVYADAT--GQKAVIVILGD-----DTNED---LAVLAKRLEDQQRSR------ 110 (185)
T ss_pred ccEEEEEcCCccccccccccccccceEEEEcCC--CCEEEEEEeCC-----CChhh---HHHHHHHHHHHHHhh------
Confidence 456999999999966543 32 24677753 33443333321 11122 356677777653221
Q ss_pred CCccceeEEeceeeeeCCCeEEEEEEEEeeccccccccccCCcccccccccceEEEEEEEEECCEEEEEEeecCcccchH
Q 028599 109 GVRRESNILSTSSRVADDGRLYYLVEVNIKSFANNNELAVMPKDRVVNLEWDRRYLSVLGVENNRLYELRLQTPENVFVE 188 (207)
Q Consensus 109 ~~~~~a~ll~a~~r~~~dG~~YY~~Ey~~~~~~~~~~~~~~p~~~~~~~~~~rH~l~~vtv~~gkLYtl~~~a~e~~W~k 188 (207)
...-.++.-+.-+ .+|+++..++-..... ...--+-++++..++||-||.+..|.+.=.+
T Consensus 111 --dp~lqvvsnK~i~-i~G~~~qQLDS~~t~~-----------------Gqk~~SSvvL~~v~~rl~tlQitlpA~nqqq 170 (185)
T PRK11615 111 --DPQLQVVTNKAIE-LKGHKLQQLDSIISAK-----------------GQTAYSSVVLGKVDNQLLTMQITLPADNQQQ 170 (185)
T ss_pred --CcCceeecceeEE-ECCeeeEEeeeeeecC-----------------CceEEEEEEEEeeCCeEEEEEEecCCCCHHH
Confidence 1123445444444 6999999999888651 1233344456777999999999999998888
Q ss_pred hhHHHHHHhcceee
Q 028599 189 EENDLRQVIDSFRV 202 (207)
Q Consensus 189 ~~~~lr~vv~SFrv 202 (207)
....-+.|+++..+
T Consensus 171 aq~~ae~ii~tl~~ 184 (185)
T PRK11615 171 AQTTAENIINTLVI 184 (185)
T ss_pred HHHHHHHHHhheec
Confidence 88888999888654
No 12
>PF07174 FAP: Fibronectin-attachment protein (FAP); InterPro: IPR010801 This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix [].; GO: 0050840 extracellular matrix binding, 0005576 extracellular region
Probab=83.99 E-value=21 Score=32.01 Aligned_cols=105 Identities=19% Similarity=0.299 Sum_probs=57.3
Q ss_pred cceeeeCCCceEEeccCCceeeccC----CcceEEeCCCC--------C-CCcEEEEEeCCCCCCCCCcccCCCHHHHHH
Q 028599 27 FREYIDTFDGYSFKYPQNWIQVRGA----GADIFYRDPYV--------L-DENVSVELSSPSSSRYKSVEDLGPPKEAGR 93 (207)
Q Consensus 27 ~~~~~D~~~gY~f~yP~~W~~~~~~----G~dv~f~d~~~--------~-~~nvsV~v~p~~~~~~~sl~dlGsp~eva~ 93 (207)
-.++.|...||+|.+|.||++.+-. |..+.-+-..+ . .+.-+|++..+.-+-+.+.+- +-..+|.
T Consensus 109 ~grvdn~~gGFS~vvP~GW~~Sda~~L~yG~alls~~~~~~~~~~~~~p~andt~v~lgrld~kl~a~ae~--dn~kaa~ 186 (297)
T PF07174_consen 109 PGRVDNAAGGFSYVVPAGWVESDASHLDYGSALLSKQTGEPPMPGQPPPVANDTSVVLGRLDLKLFASAEP--DNTKAAV 186 (297)
T ss_pred cccccccccceEEeccCCccccccceeecceeeeccCCCCCCCCCCCCCcCCCceEEeccccccccccccC--ChHHHHH
Confidence 4678888999999999999987643 44333221111 1 234555666542222222221 3345788
Q ss_pred HHHHHhhhhccccccC--CccceeEEeceeeeeCCC-eEEEEEEEEe
Q 028599 94 KVLRQYLTEFMSTRLG--VRRESNILSTSSRVADDG-RLYYLVEVNI 137 (207)
Q Consensus 94 ~l~~~~~~~~~str~~--~~~~a~ll~a~~r~~~dG-~~YY~~Ey~~ 137 (207)
+|..++-.-+|.. +| .+++..-|++.- ..| ..||...|.-
T Consensus 187 rl~sdmgeffmp~-pg~rinq~~~~l~~~g---~~g~asyyevkf~d 229 (297)
T PF07174_consen 187 RLASDMGEFFMPY-PGTRINQETTPLDANG---MPGSASYYEVKFTD 229 (297)
T ss_pred HHhccccceeccC-CCccccccccccccCC---cccceeEEEEEecc
Confidence 8887763334543 22 256666676532 233 4576665544
No 13
>COG4784 Putative Zn-dependent protease [General function prediction only]
Probab=61.93 E-value=21 Score=33.40 Aligned_cols=40 Identities=23% Similarity=0.277 Sum_probs=27.5
Q ss_pred EEEEEEE-ECCEEEEEEeecCcccchHhhHHHHHHhcceeee
Q 028599 163 YLSVLGV-ENNRLYELRLQTPENVFVEEENDLRQVIDSFRVN 203 (207)
Q Consensus 163 ~l~~vtv-~~gkLYtl~~~a~e~~W~k~~~~lr~vv~SFrv~ 203 (207)
.+=++.+ .+++.|.|...+|...- ..++.+..+..|||.+
T Consensus 375 ~fdvaVI~~g~rvyrfltavp~gs~-~l~~~a~sv~~SFR~l 415 (479)
T COG4784 375 QFDVAVIRAGDRVYRFLTAVPKGST-ALEPRANSVRRSFRPL 415 (479)
T ss_pred cceEEEEEeCCEEEEEEEecccCcc-hhhHHHHHHHhhcccC
Confidence 3334444 36788888777765543 3466899999999976
No 14
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=48.75 E-value=27 Score=19.81 Aligned_cols=21 Identities=29% Similarity=0.518 Sum_probs=18.0
Q ss_pred EEEECCEEEEEEeecCcccch
Q 028599 167 LGVENNRLYELRLQTPENVFV 187 (207)
Q Consensus 167 vtv~~gkLYtl~~~a~e~~W~ 187 (207)
++-.+|+||.+.+...+.+|.
T Consensus 11 ~~~~~g~l~a~d~~~G~~~W~ 31 (33)
T smart00564 11 VGSTDGTLYALDAKTGEILWT 31 (33)
T ss_pred EEcCCCEEEEEEcccCcEEEE
Confidence 445689999999999999996
No 15
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=45.40 E-value=13 Score=30.47 Aligned_cols=19 Identities=42% Similarity=0.894 Sum_probs=16.2
Q ss_pred CcccCCCHHHHHHHHHHHh
Q 028599 81 SVEDLGPPKEAGRKVLRQY 99 (207)
Q Consensus 81 sl~dlGsp~eva~~l~~~~ 99 (207)
-+++||+|+++|+.++.+.
T Consensus 46 ii~~LG~P~~iA~~i~~~~ 64 (181)
T PF08006_consen 46 IIAELGSPKEIAREILAEY 64 (181)
T ss_pred HHHHcCCHHHHHHHHHHhh
Confidence 3689999999999988764
No 16
>PF10657 RC-P840_PscD: Photosystem P840 reaction centre protein PscD; InterPro: IPR019608 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. The photosynthetic reaction centres (RCs) of aerotolerant organisms contain a heterodimeric core, built up of two strongly homologous polypeptides each of which contributes five transmembrane peptide helices to hold a pseudo-symmetric double set of redox components. Two molecules of PscD are housed within a subunit. PscD may be involved in stabilising the PscB component since it is found to co-precipitate with FMO (Fenna-Mathews-Olson BChl a-protein) and PscB. It may also be involved in the interaction with ferredoxin [].
Probab=41.02 E-value=89 Score=24.96 Aligned_cols=66 Identities=17% Similarity=0.273 Sum_probs=38.5
Q ss_pred CCCCcEEEEEeCCCCCCCCCcccCCCHHHHHHHHHHHhhhhc-cccccCCccceeEEeceeeeeCCCeEEEEEEEEee
Q 028599 62 VLDENVSVELSSPSSSRYKSVEDLGPPKEAGRKVLRQYLTEF-MSTRLGVRRESNILSTSSRVADDGRLYYLVEVNIK 138 (207)
Q Consensus 62 ~~~~nvsV~v~p~~~~~~~sl~dlGsp~eva~~l~~~~~~~~-~str~~~~~~a~ll~a~~r~~~dG~~YY~~Ey~~~ 138 (207)
+..+++.++++|.++. +.|-.-.|...+|.+..+.-+ .+|. ..--|+-.+.. .|...-|..++.-+
T Consensus 42 D~~g~Lql~i~pasGr-----rkLspt~emi~~l~~geIel~VLttq-----pDIai~l~~kV-ldnEnRYViDFD~R 108 (144)
T PF10657_consen 42 DRYGKLQLTISPASGR-----RKLSPTPEMIDKLISGEIELFVLTTQ-----PDIAINLQQKV-LDNENRYVIDFDKR 108 (144)
T ss_pred ccCCceEEEEecCCCc-----cccCCcHHHHHHHhcCceEEEEEccC-----CCeeechhhhh-hcccceEEEeccCC
Confidence 4467899999997542 345556678888876555443 2332 22234444444 45555677776553
No 17
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=26.57 E-value=45 Score=20.06 Aligned_cols=22 Identities=23% Similarity=0.368 Sum_probs=18.6
Q ss_pred EEEECCEEEEEEeecCcccchH
Q 028599 167 LGVENNRLYELRLQTPENVFVE 188 (207)
Q Consensus 167 vtv~~gkLYtl~~~a~e~~W~k 188 (207)
++..+|+||.|.+.+.+..|..
T Consensus 5 ~~~~~g~l~AlD~~TG~~~W~~ 26 (38)
T PF01011_consen 5 VGTPDGYLYALDAKTGKVLWKF 26 (38)
T ss_dssp EETTTSEEEEEETTTTSEEEEE
T ss_pred EeCCCCEEEEEECCCCCEEEee
Confidence 3356899999999999999974
No 18
>PF14202 TnpW: Transposon-encoded protein TnpW
Probab=23.09 E-value=1.5e+02 Score=18.29 Aligned_cols=28 Identities=11% Similarity=0.260 Sum_probs=24.9
Q ss_pred CCEEEEEEeecCcccchHhhHHHHHHhc
Q 028599 171 NNRLYELRLQTPENVFVEEENDLRQVID 198 (207)
Q Consensus 171 ~gkLYtl~~~a~e~~W~k~~~~lr~vv~ 198 (207)
+|..|.+.+-.++..=+.+++.+.+++.
T Consensus 8 G~Tty~V~~~F~~~s~et~~DKi~rli~ 35 (37)
T PF14202_consen 8 GKTTYVVEVHFSETSKETMQDKIKRLIR 35 (37)
T ss_pred CCEEEEEEEEECCCccccHHHHHHHHHh
Confidence 6889999999999998899999988874
Done!