Query 028599
Match_columns 207
No_of_seqs 117 out of 300
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 23:32:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028599.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028599hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xb3_A PSBP protein; photosynt 100.0 5.8E-42 2E-46 278.0 19.0 162 22-203 3-165 (165)
2 1v2b_A 23-kDa polypeptide of p 100.0 3E-41 1E-45 278.6 13.3 161 22-202 4-176 (177)
3 2lnj_A SLL1418 protein, putati 100.0 1.5E-42 5.1E-47 283.7 0.0 159 21-203 8-170 (170)
4 1tu1_A Hypothetical protein PA 98.5 1.4E-05 4.7E-10 63.0 17.3 140 26-204 2-143 (148)
5 3lyd_A Uncharacterized protein 97.6 0.0037 1.3E-07 50.3 15.4 133 36-204 19-159 (161)
6 3hlz_A Uncharacterized protein 71.1 5.6 0.00019 33.8 5.0 44 29-72 6-49 (269)
7 1ywi_A Formin-binding protein 28.1 31 0.001 20.8 1.8 20 169-188 19-38 (41)
8 2ysi_A Transcription elongatio 27.4 18 0.00061 21.8 0.6 20 169-188 17-36 (40)
9 2kvt_A Uncharacterized protein 26.1 1.2E+02 0.0039 20.6 4.5 34 104-139 1-34 (71)
10 1e0l_A Formin binding protein; 21.8 23 0.0008 20.8 0.4 20 169-188 13-32 (37)
No 1
>2xb3_A PSBP protein; photosynthesis, zinc-binding, photosystem; 2.80A {Thermosynechococcus elongatus}
Probab=100.00 E-value=5.8e-42 Score=277.95 Aligned_cols=162 Identities=32% Similarity=0.643 Sum_probs=144.3
Q ss_pred ccCcCcceeeeCCCceEEeccCCceeeccC-CcceEEeCCCCCCCcEEEEEeCCCCCCCCCcccCCCHHHHHHHHHHHhh
Q 028599 22 QQSVGFREYIDTFDGYSFKYPQNWIQVRGA-GADIFYRDPYVLDENVSVELSSPSSSRYKSVEDLGPPKEAGRKVLRQYL 100 (207)
Q Consensus 22 ~~~~g~~~~~D~~~gY~f~yP~~W~~~~~~-G~dv~f~d~~~~~~nvsV~v~p~~~~~~~sl~dlGsp~eva~~l~~~~~ 100 (207)
..+.||++|.|+.+||+|.||++|+++.++ |++++|+||.+..+||+|+|+|++. .++|++||+|++|+++|+++.+
T Consensus 3 ~~~~g~~~~~D~~~gysf~~P~~W~~~~~~~g~~v~f~d~~~~~~~v~V~v~p~~~--~~~l~~~G~~e~va~~l~~~~~ 80 (165)
T 2xb3_A 3 SATSGLQAYVDSYDGYEFLYPRGWVQVQVEDPVDVVFHDIIETTENVSVVVNTVAS--TKSLEELGSPEEVGDRLLRNII 80 (165)
T ss_dssp ---CCEEEEEETTTTEEEEEETTEEEECCCTTEEEEEEESSCTTSEEEEEEEECSS--CCCSGGGCCHHHHHHHHHHHTT
T ss_pred CCCCCceEEEcCCCCEEEEcCCCCeEecCCCCceEEEECcccCCceEEEEEecCCC--CCChHHcCCHHHHHHHHHHHhh
Confidence 357899999999999999999999999998 9999999999889999999999853 7999999999999999999887
Q ss_pred hhccccccCCccceeEEeceeeeeCCCeEEEEEEEEeeccccccccccCCcccccccccceEEEEEEEEECCEEEEEEee
Q 028599 101 TEFMSTRLGVRRESNILSTSSRVADDGRLYYLVEVNIKSFANNNELAVMPKDRVVNLEWDRRYLSVLGVENNRLYELRLQ 180 (207)
Q Consensus 101 ~~~~str~~~~~~a~ll~a~~r~~~dG~~YY~~Ey~~~~~~~~~~~~~~p~~~~~~~~~~rH~l~~vtv~~gkLYtl~~~ 180 (207)
++ +++++.++|+++++|. .+|++||+|||.+++ |+++ +.++.||.|+++++++||||+|++|
T Consensus 81 ~~-----~~~~~~~~l~~a~~r~-~~G~~yY~~Ey~~~~----------~~~~--~~~~~rh~l~~~~v~~g~lY~l~~s 142 (165)
T 2xb3_A 81 AP-----SESGRSSALIAATSQK-ADDKTYYILEYAVTL----------PGDG--NTAQQRHNLSSIAVSRGKVYTLSVS 142 (165)
T ss_dssp SC-----TTSSCEEEEEEEEEEE-ETTEEEEEEEEEEEC----------C-------CCEEEEEEEEEEETTEEEEEEEE
T ss_pred cC-----CCCCcceEEEEeeeee-cCCceEEEEEEEEec----------CCCc--cCccccEEEEEEEEECCEEEEEEEe
Confidence 75 4567899999999997 799999999999987 4321 1348999999999999999999999
Q ss_pred cCcccchHhhHHHHHHhcceeee
Q 028599 181 TPENVFVEEENDLRQVIDSFRVN 203 (207)
Q Consensus 181 a~e~~W~k~~~~lr~vv~SFrv~ 203 (207)
+||++|+++++.|++|++||+++
T Consensus 143 ape~~w~~~~~~l~~v~~SF~v~ 165 (165)
T 2xb3_A 143 APEERWPKVEDQFKTIVSSFTVY 165 (165)
T ss_dssp EEGGGHHHHHHHHHHHHHTCEEC
T ss_pred cCHHHhHHHHHHHHHHHhhEEeC
Confidence 99999999999999999999985
No 2
>1v2b_A 23-kDa polypeptide of photosystem II oxygen- evolving complex; alpha-beta, riken structural genomics/proteomics initiative, RSGI; HET: GLC; 1.60A {Nicotiana tabacum} SCOP: d.107.1.2
Probab=100.00 E-value=3e-41 Score=278.57 Aligned_cols=161 Identities=21% Similarity=0.358 Sum_probs=128.9
Q ss_pred ccCcCcceeeeCCCceEEeccCCceeecc---CCcceEEeCCCCCCCcEEEEEeCCCCCCCCCcccCCCHHHH----HHH
Q 028599 22 QQSVGFREYIDTFDGYSFKYPQNWIQVRG---AGADIFYRDPYVLDENVSVELSSPSSSRYKSVEDLGPPKEA----GRK 94 (207)
Q Consensus 22 ~~~~g~~~~~D~~~gY~f~yP~~W~~~~~---~G~dv~f~d~~~~~~nvsV~v~p~~~~~~~sl~dlGsp~ev----a~~ 94 (207)
.++.||++|. .+||+|+||.+|+++++ +|+|++|+|+.+..+||+|+|+|+. .++|+|||+|+++ +++
T Consensus 4 ~~~~g~~~y~--~~gysf~yP~~W~~~~~~~~~G~~~~f~d~~~~~~nvsV~v~p~~---~~si~dlGspe~~~~~v~~~ 78 (177)
T 1v2b_A 4 KTDTDFQTYN--GDGFKLQIPSKWNPNKEVEYPGQVLRFEDNFDATSNVIVAITPTD---KKSITDFGSPEQFLSQVDYL 78 (177)
T ss_dssp ---CCEEEEE--CSSEEEEEETTCEECCCCCSTTEEEEEEETTEEEEEEEEEEEECS---CSSGGGGCSHHHHHHHTGGG
T ss_pred CCCCCceEEe--cCCEEEEcCCCCcccccccCCCceEEEeCCcCCCccEEEEEeCCC---CCChhHCCCHHHHHHHHHHH
Confidence 3678999997 99999999999998764 4899999999999999999999983 4899999999995 666
Q ss_pred HHHHhhhhc-ccc---ccCCccceeEEeceeeeeCCCeEEEEEEEEeeccccccccccCCcccccccccceEEEEEEEEE
Q 028599 95 VLRQYLTEF-MST---RLGVRRESNILSTSSRVADDGRLYYLVEVNIKSFANNNELAVMPKDRVVNLEWDRRYLSVLGVE 170 (207)
Q Consensus 95 l~~~~~~~~-~st---r~~~~~~a~ll~a~~r~~~dG~~YY~~Ey~~~~~~~~~~~~~~p~~~~~~~~~~rH~l~~vtv~ 170 (207)
|+++++++. ++. .+++.++++||++++|+ .||++||+|||.+++ |++ .++.||+|+++||+
T Consensus 79 l~~~~~~~~~~~~~gf~~~~~~~a~ll~a~~r~-~~G~~YY~~E~~~~~----------~~g----~e~~rH~l~~~tv~ 143 (177)
T 1v2b_A 79 LGRQAYSGKTDSEGGFESDAVAIANVLETSTAE-VGGKQYYYLSILTRT----------ADG----NEGGKHQLVTATVN 143 (177)
T ss_dssp C------------------CCCEEEEEEEEEEE-ETTEEEEEEEEEEEC-------------------CCEEEEEEEEEE
T ss_pred HHHHhhcccccccCCcccCcccceEEEEeEEEE-eCCeEEEEEEEEEec----------CCC----CccccEEEEEEEEE
Confidence 677766641 111 12445889999999999 699999999999987 432 35899999999999
Q ss_pred CCEEEEEEeecCcccchHh-hHHHHHHhcceee
Q 028599 171 NNRLYELRLQTPENVFVEE-ENDLRQVIDSFRV 202 (207)
Q Consensus 171 ~gkLYtl~~~a~e~~W~k~-~~~lr~vv~SFrv 202 (207)
+||||+|++||+|+||.+. ++.|++|++||+|
T Consensus 144 ~gkLY~l~~~a~e~~W~k~~~~~l~~v~~SF~v 176 (177)
T 1v2b_A 144 DGKLYICKAQAGDKRWFKGAKKFVENTATSFSL 176 (177)
T ss_dssp TTEEEEEEEEEEGGGCSTTTTHHHHHHHHTCEE
T ss_pred CCEEEEEEEecCHHHhhhhHHHHHHHHHhheec
Confidence 9999999999999999995 9999999999998
No 3
>2lnj_A SLL1418 protein, putative uncharacterized protein SLL1418; cyanop, photosystem II, PSBP, photosynthesis; NMR {Synechocystis SP}
Probab=100.00 E-value=1.5e-42 Score=283.67 Aligned_cols=159 Identities=28% Similarity=0.487 Sum_probs=146.7
Q ss_pred cccCcCcceeeeCCCceEEeccCCceeeccC----CcceEEeCCCCCCCcEEEEEeCCCCCCCCCcccCCCHHHHHHHHH
Q 028599 21 AQQSVGFREYIDTFDGYSFKYPQNWIQVRGA----GADIFYRDPYVLDENVSVELSSPSSSRYKSVEDLGPPKEAGRKVL 96 (207)
Q Consensus 21 a~~~~g~~~~~D~~~gY~f~yP~~W~~~~~~----G~dv~f~d~~~~~~nvsV~v~p~~~~~~~sl~dlGsp~eva~~l~ 96 (207)
+..+.||++|.|+.+||+|+||++|++++++ |+|++|+||.+..+||+|+|+|++. .++|+|||+|++|+++|+
T Consensus 8 ~~~~~g~~~y~d~~~gy~f~~P~gW~~~~~~~~~~g~~v~f~d~~~~~~nvsV~v~p~~~--~~si~d~G~pe~va~~l~ 85 (170)
T 2lnj_A 8 GVGIASLQRYSDTKDGYEFLYPNGWIGVDVKGASPGVDVVFRDLIERDENLSVIISEIPS--DKTLTDLGTATDVGYRFM 85 (170)
Confidence 3468899999999999999999999998887 9999999999999999999999853 699999999999999999
Q ss_pred HHhhhhccccccCCccceeEEeceeeeeCCCeEEEEEEEEeeccccccccccCCcccccccccceEEEEEEEEECCEEEE
Q 028599 97 RQYLTEFMSTRLGVRRESNILSTSSRVADDGRLYYLVEVNIKSFANNNELAVMPKDRVVNLEWDRRYLSVLGVENNRLYE 176 (207)
Q Consensus 97 ~~~~~~~~str~~~~~~a~ll~a~~r~~~dG~~YY~~Ey~~~~~~~~~~~~~~p~~~~~~~~~~rH~l~~vtv~~gkLYt 176 (207)
++++++ +++++.++||++++|+ .||++||+|||.+++ |+ ++.||.|+++++++||||+
T Consensus 86 ~~~~~~-----~~~~~~a~li~a~~~~-~~G~~yY~~Ey~~~~----------~~------~~~rh~l~~~~v~~gklY~ 143 (170)
T 2lnj_A 86 KTVNDA-----SQGDRQAELINAEARD-EDGQVYYTLEYRVLV----------GD------NVERHDLASVTTNRGKLIT 143 (170)
Confidence 998776 4667899999999997 899999999999987 43 3799999999999999999
Q ss_pred EEeecCcccchHhhHHHHHHhcceeee
Q 028599 177 LRLQTPENVFVEEENDLRQVIDSFRVN 203 (207)
Q Consensus 177 l~~~a~e~~W~k~~~~lr~vv~SFrv~ 203 (207)
|++|+||++|.++++.|++|++||+|+
T Consensus 144 l~~~ape~~w~~~~~~l~~v~~SF~v~ 170 (170)
T 2lnj_A 144 FDLSTAEDRWDTVKSLFDTVASSFHVY 170 (170)
Confidence 999999999999999999999999985
No 4
>1tu1_A Hypothetical protein PA0094; structural genomics, PSI, PROT structure initiative, midwest center for structural genomic unknown function; 1.95A {Pseudomonas aeruginosa} SCOP: d.107.1.3
Probab=98.50 E-value=1.4e-05 Score=63.05 Aligned_cols=140 Identities=11% Similarity=0.086 Sum_probs=92.8
Q ss_pred CcceeeeCCCceEEeccCCceeeccCCcceEEeCCCCCC--CcEEEEEeCCCCCCCCCcccCCCHHHHHHHHHHHhhhhc
Q 028599 26 GFREYIDTFDGYSFKYPQNWIQVRGAGADIFYRDPYVLD--ENVSVELSSPSSSRYKSVEDLGPPKEAGRKVLRQYLTEF 103 (207)
Q Consensus 26 g~~~~~D~~~gY~f~yP~~W~~~~~~G~dv~f~d~~~~~--~nvsV~v~p~~~~~~~sl~dlGsp~eva~~l~~~~~~~~ 103 (207)
.+..|. .+.++|..|.+|.... ..|.+-+..... -|+.|...+++. . .+.++..++-+++....
T Consensus 2 ~m~~y~--~~Egsl~lP~gw~D~t---~nv~~~~~~~~~g~~~lvIsR~~~~~--~------~~l~~~~~~q~~~l~~~- 67 (148)
T 1tu1_A 2 HMTLYR--LHEADLEIPDAWQDQS---INIFKLPASGPAREASFVISRDASQG--D------APFADYVARQLENAEKQ- 67 (148)
T ss_dssp CEEEEE--CSSEEEEEETTSEECC---BEEEEECCBTTBCCEEEEEEEECCCT--T------SCHHHHHHHHHHHHHHH-
T ss_pred CCceEE--ECCEEEeCCCCcEeee---EEEEEcCCCCCCCceEEEEEeccCCC--C------CCHHHHHHHHHHHHHhh-
Confidence 355673 8899999999999433 234333322212 466666666532 1 34555555544433222
Q ss_pred cccccCCccceeEEeceeeeeCCCeEEEEEEEEeeccccccccccCCcccccccccceEEEEEEEEECCEEEEEEeecCc
Q 028599 104 MSTRLGVRRESNILSTSSRVADDGRLYYLVEVNIKSFANNNELAVMPKDRVVNLEWDRRYLSVLGVENNRLYELRLQTPE 183 (207)
Q Consensus 104 ~str~~~~~~a~ll~a~~r~~~dG~~YY~~Ey~~~~~~~~~~~~~~p~~~~~~~~~~rH~l~~vtv~~gkLYtl~~~a~e 183 (207)
. ..-+++...... .+|.+--.+||.-.. . ...+|..-++.+..+++|.|+.+|+.
T Consensus 68 ----l---~~y~~~~~~~~~-l~g~~a~~~e~~~~~----------~-------g~~~~Q~q~~~~~~~~~l~~t~t~~~ 122 (148)
T 1tu1_A 68 ----L---PGFKLHKRWDIN-IHGHAAVLLDYQWQR----------E-------GRDLMLRQVFIERRPAVLITTLTTTP 122 (148)
T ss_dssp ----S---TTCEEEEEEEEE-ETTEEEEEEEEEEEE----------T-------TEEEEEEEEEECCSSSEEEEEEEECG
T ss_pred ----C---cCcEEeeeEeEE-EcCCcEEEEEEEEcc----------C-------CEEEEEEEEEEEECCeEEEEEEEcCC
Confidence 1 123344433333 478777778877764 2 36789999998887799999999999
Q ss_pred ccchHhhHHHHHHhcceeeee
Q 028599 184 NVFVEEENDLRQVIDSFRVNK 204 (207)
Q Consensus 184 ~~W~k~~~~lr~vv~SFrv~~ 204 (207)
..|+..++.++.|++||+...
T Consensus 123 ~~~~~~~~~~~~i~~Sf~~~~ 143 (148)
T 1tu1_A 123 ADLPHHEPAWKQAMQTLVPRP 143 (148)
T ss_dssp GGHHHHHHHHHHHHHTCEECC
T ss_pred CCCHHHHHHHHHHHHhcccCC
Confidence 999999999999999999753
No 5
>3lyd_A Uncharacterized protein; PSI-2, MCSG, GEBA, genomic encyclopae bacteria and archaea, structural genomics, protein structur initiative; HET: MSE; 1.45A {Jonesia denitrificans}
Probab=97.60 E-value=0.0037 Score=50.33 Aligned_cols=133 Identities=13% Similarity=0.143 Sum_probs=85.5
Q ss_pred ceEEeccCCceeeccCCcceEEeCCC---CCCCcEEEEEeCCCCCCCCCcccCCCHHHHHHHHHHHhhhhccccccCCcc
Q 028599 36 GYSFKYPQNWIQVRGAGADIFYRDPY---VLDENVSVELSSPSSSRYKSVEDLGPPKEAGRKVLRQYLTEFMSTRLGVRR 112 (207)
Q Consensus 36 gY~f~yP~~W~~~~~~G~dv~f~d~~---~~~~nvsV~v~p~~~~~~~sl~dlGsp~eva~~l~~~~~~~~~str~~~~~ 112 (207)
++++-.|.||+.....|.-+...+.. .-.-|+-|++.-... |+ .+ .+.+=+++.++.. .
T Consensus 19 ~~~v~~P~gWe~~~~~~~~~~~~~~~~~~~F~pN~vVtv~r~~~-------~~--~e-~~r~el~~~~~~l--------p 80 (161)
T 3lyd_A 19 GFTVPIPETWQPDPTMGTQFAARPHTPPQGFTPNIIGTVRRAAT-------GA--LH-NQRTELDQRATQL--------P 80 (161)
T ss_dssp EEEEECCTTEEECTTSSSSEEEEESSCCSSSCCEEEEEEEEECT-------TH--HH-HHHHHHHHHHTTS--------T
T ss_pred eeeccCCCCceEcCCCCceEEeccCCCCCCccccEEEEEEecCc-------HH--HH-HHHHHHHHHHhhC--------C
Confidence 58899999999997766644443322 234588888886632 22 23 3333333333320 1
Q ss_pred ceeEEeceeeeeCCCeEEEEEEEEeeccccccccccCCcccccccccceEE--EEEEEE-ECCEEEEE--EeecCcccch
Q 028599 113 ESNILSTSSRVADDGRLYYLVEVNIKSFANNNELAVMPKDRVVNLEWDRRY--LSVLGV-ENNRLYEL--RLQTPENVFV 187 (207)
Q Consensus 113 ~a~ll~a~~r~~~dG~~YY~~Ey~~~~~~~~~~~~~~p~~~~~~~~~~rH~--l~~vtv-~~gkLYtl--~~~a~e~~W~ 187 (207)
.-++++-...+ .+|.+-+..||.-.. |. .+.|. +..+.+ .++..|.+ +++|.+.+-+
T Consensus 81 ~~~~~~r~~~~-~~G~pa~~iey~y~~----------~~-------~g~~aq~~~~vvve~~~v~~vv~lt~T~~~~q~~ 142 (161)
T 3lyd_A 81 DYAERGRTETT-VDGFPAYHIEYAYRH----------HG-------TITIAQMITLVEVSHPHAVDIIQLTATCAGDQTA 142 (161)
T ss_dssp TCEEEEEEEEE-ETTEEEEEEEEEEEE----------TT-------TEEEEEEEEEEEEECSSCEEEEEEEEEEEGGGHH
T ss_pred CcEeecccccc-cCCcccEEEEEEEec----------CC-------CceEeeEEEEEEEecCCEEEEEEEEEEeccccch
Confidence 22334333333 799999999998643 32 34452 344444 46666666 9999999999
Q ss_pred HhhHHHHHHhcceeeee
Q 028599 188 EEENDLRQVIDSFRVNK 204 (207)
Q Consensus 188 k~~~~lr~vv~SFrv~~ 204 (207)
...+.++.|++|+++.+
T Consensus 143 ~~~~d~q~iv~sl~v~p 159 (161)
T 3lyd_A 143 DYWDTFRLMHADLTVQP 159 (161)
T ss_dssp HHHHHHHHHHHTCEEET
T ss_pred HHHHHHHHHhheeEecc
Confidence 99999999999999975
No 6
>3hlz_A Uncharacterized protein BT_1490; NP_810393.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides thetaiotaomicron vpi-5482}
Probab=71.06 E-value=5.6 Score=33.77 Aligned_cols=44 Identities=18% Similarity=0.467 Sum_probs=34.0
Q ss_pred eeeeCCCceEEeccCCceeeccCCcceEEeCCCCCCCcEEEEEe
Q 028599 29 EYIDTFDGYSFKYPQNWIQVRGAGADIFYRDPYVLDENVSVELS 72 (207)
Q Consensus 29 ~~~D~~~gY~f~yP~~W~~~~~~G~dv~f~d~~~~~~nvsV~v~ 72 (207)
-|..+..=|++.||.+|.|.....---.|.||..=.+|..+.--
T Consensus 6 k~ISPgaWfs~~yP~~W~EfEd~E~sflFynp~~WtGNfRISay 49 (269)
T 3hlz_A 6 KFISPGAWFSMNYPSDWNEFEDGEGSFLFYNPDVWTGNFRISAF 49 (269)
T ss_dssp EEECGGGCEEEEECTTCEEECCCTTEEEEECSSSCCCEEEEEEE
T ss_pred eeecCCceeEEecCCCcccccCCCCceeeeChhhcccceEEEec
Confidence 46666677999999999998765444679999988888866533
No 7
>1ywi_A Formin-binding protein 3; WW domain, class II, proline-rich peptides, protein-protein interactions, structural protein; NMR {Homo sapiens} SCOP: b.72.1.1 PDB: 1ywj_A 1zr7_A 2dyf_A
Probab=28.13 E-value=31 Score=20.77 Aligned_cols=20 Identities=15% Similarity=0.297 Sum_probs=18.1
Q ss_pred EECCEEEEEEeecCcccchH
Q 028599 169 VENNRLYELRLQTPENVFVE 188 (207)
Q Consensus 169 v~~gkLYtl~~~a~e~~W~k 188 (207)
..+|+.|=.|..+.+.+|++
T Consensus 19 ~~~G~~YYyN~~T~eS~We~ 38 (41)
T 1ywi_A 19 SPDGRTYYYNTETKQSTWEK 38 (41)
T ss_dssp ETTTEEEEEETTTTEEEESC
T ss_pred CCCCCEEEEECCCCCEEeCC
Confidence 45899999999999999985
No 8
>2ysi_A Transcription elongation regulator 1; Ca150, FBP28, WW domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.22.1.1
Probab=27.37 E-value=18 Score=21.79 Aligned_cols=20 Identities=15% Similarity=0.390 Sum_probs=18.2
Q ss_pred EECCEEEEEEeecCcccchH
Q 028599 169 VENNRLYELRLQTPENVFVE 188 (207)
Q Consensus 169 v~~gkLYtl~~~a~e~~W~k 188 (207)
..+|+.|=+|..+.+.+|++
T Consensus 17 ~~~G~~YYyN~~T~eS~We~ 36 (40)
T 2ysi_A 17 TPDGKVYYYNARTRESAWTK 36 (40)
T ss_dssp CTTSCEEEEETTTCCEESSC
T ss_pred CCCCCEEEEECCCCCEEeCC
Confidence 56899999999999999986
No 9
>2kvt_A Uncharacterized protein YAIA; structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium, NESG; NMR {Escherichia coli}
Probab=26.12 E-value=1.2e+02 Score=20.58 Aligned_cols=34 Identities=18% Similarity=0.225 Sum_probs=26.6
Q ss_pred cccccCCccceeEEeceeeeeCCCeEEEEEEEEeec
Q 028599 104 MSTRLGVRRESNILSTSSRVADDGRLYYLVEVNIKS 139 (207)
Q Consensus 104 ~str~~~~~~a~ll~a~~r~~~dG~~YY~~Ey~~~~ 139 (207)
|.+|++-.|++.|+..+ ++..|++--.||++.+-
T Consensus 1 Mp~rPpYPReA~iV~ve--KG~~g~~vtwyeLRADh 34 (71)
T 2kvt_A 1 MPTKPPYPREAYIVTIE--KGKPGQTVTWYQLRADH 34 (71)
T ss_dssp CCCCCSSCCCEEEEEEE--EECSSSEEEEEEEEESS
T ss_pred CCCCCCCCcceEEEEee--cCCCCceEEEEEeecCC
Confidence 55778888999999663 34688888889998875
No 10
>1e0l_A Formin binding protein; SH3 domain, WW domain, FBP28, signal transduction; NMR {Mus musculus} SCOP: b.72.1.1 PDB: 2jup_W 2rly_W 2rm0_W 2nnt_A
Probab=21.76 E-value=23 Score=20.75 Aligned_cols=20 Identities=15% Similarity=0.260 Sum_probs=17.8
Q ss_pred EECCEEEEEEeecCcccchH
Q 028599 169 VENNRLYELRLQTPENVFVE 188 (207)
Q Consensus 169 v~~gkLYtl~~~a~e~~W~k 188 (207)
..+|+.|=.|..+.+.+|++
T Consensus 13 ~~~G~~YYyN~~T~es~We~ 32 (37)
T 1e0l_A 13 TADGKTYYYNNRTLESTWEK 32 (37)
T ss_dssp CTTSCEEEEETTTTEEESSC
T ss_pred CCCCCEEEEECCCCCEEecC
Confidence 45799999999999999986
Done!