Query 028600
Match_columns 207
No_of_seqs 111 out of 1293
Neff 9.8
Searched_HMMs 46136
Date Fri Mar 29 14:02:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028600.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028600hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK11670 antiporter inner memb 100.0 6.5E-32 1.4E-36 219.5 19.6 193 7-205 87-281 (369)
2 TIGR03018 pepcterm_TyrKin exop 100.0 3.6E-32 7.7E-37 206.0 11.3 189 4-201 8-207 (207)
3 TIGR01007 eps_fam capsular exo 100.0 8.2E-32 1.8E-36 203.7 13.1 184 9-206 1-193 (204)
4 TIGR03029 EpsG chain length de 100.0 5.1E-32 1.1E-36 213.5 11.1 186 5-202 81-274 (274)
5 KOG3022 Predicted ATPase, nucl 100.0 7.5E-31 1.6E-35 198.6 16.8 185 19-204 35-222 (300)
6 COG0489 Mrp ATPases involved i 100.0 1E-29 2.2E-34 198.2 16.2 189 7-204 35-230 (265)
7 TIGR01969 minD_arch cell divis 100.0 2.5E-29 5.5E-34 195.7 16.1 164 32-205 1-172 (251)
8 CHL00175 minD septum-site dete 100.0 8.9E-29 1.9E-33 195.8 17.1 168 27-205 11-190 (281)
9 PRK11519 tyrosine kinase; Prov 100.0 1.2E-29 2.7E-34 222.5 12.5 187 7-205 506-700 (719)
10 PRK09841 cryptic autophosphory 100.0 2.2E-29 4.7E-34 221.1 12.2 187 7-205 511-705 (726)
11 cd02117 NifH_like This family 100.0 2.9E-28 6.3E-33 185.3 16.3 168 32-205 1-187 (212)
12 cd02037 MRP-like MRP (Multiple 100.0 3.2E-28 7E-33 178.8 15.2 133 33-205 1-133 (169)
13 TIGR01005 eps_transp_fam exopo 100.0 4.1E-29 8.9E-34 221.1 11.2 189 5-205 524-720 (754)
14 TIGR01968 minD_bact septum sit 100.0 8.7E-28 1.9E-32 188.0 16.4 164 31-205 1-175 (261)
15 PRK13869 plasmid-partitioning 100.0 4.5E-28 9.7E-33 199.6 14.0 172 29-205 119-326 (405)
16 PRK13232 nifH nitrogenase redu 100.0 1.1E-27 2.4E-32 188.8 15.2 170 31-204 1-185 (273)
17 COG0455 flhG Antiactivator of 100.0 2.2E-27 4.9E-32 183.8 14.4 167 30-205 1-178 (262)
18 PRK10818 cell division inhibit 100.0 4.2E-27 9.2E-32 185.2 15.9 166 30-205 1-185 (270)
19 PRK13185 chlL protochlorophyll 100.0 5E-27 1.1E-31 184.8 15.8 168 30-204 1-185 (270)
20 TIGR03371 cellulose_yhjQ cellu 99.9 4E-27 8.6E-32 182.9 14.4 169 31-205 1-180 (246)
21 COG2894 MinD Septum formation 99.9 2E-27 4.3E-32 174.5 10.6 166 30-205 1-184 (272)
22 PRK13705 plasmid-partitioning 99.9 3.5E-27 7.7E-32 193.2 12.4 173 28-205 103-306 (388)
23 PRK13233 nifH nitrogenase redu 99.9 1.2E-26 2.6E-31 183.1 14.8 171 30-204 1-188 (275)
24 PHA02519 plasmid partition pro 99.9 7.9E-27 1.7E-31 190.8 13.7 172 29-205 104-306 (387)
25 TIGR03815 CpaE_hom_Actino heli 99.9 5.4E-26 1.2E-30 183.0 17.9 163 28-204 90-266 (322)
26 TIGR03453 partition_RepA plasm 99.9 8.9E-27 1.9E-31 191.7 12.8 172 29-205 102-309 (387)
27 COG1192 Soj ATPases involved i 99.9 1.2E-26 2.7E-31 181.5 12.2 172 30-206 1-190 (259)
28 cd02032 Bchl_like This family 99.9 6.3E-26 1.4E-30 178.2 16.1 166 33-205 2-184 (267)
29 TIGR01281 DPOR_bchL light-inde 99.9 6.4E-26 1.4E-30 178.3 16.0 166 33-205 2-184 (268)
30 CHL00072 chlL photochlorophyll 99.9 8.9E-26 1.9E-30 178.7 16.9 165 34-205 3-184 (290)
31 PRK13235 nifH nitrogenase redu 99.9 1E-25 2.2E-30 177.6 16.4 170 31-204 1-187 (274)
32 cd02040 NifH NifH gene encodes 99.9 1.6E-25 3.5E-30 176.2 16.3 170 31-204 1-186 (270)
33 PRK10037 cell division protein 99.9 4.1E-26 8.9E-31 177.6 12.4 164 31-204 1-174 (250)
34 PRK13236 nitrogenase reductase 99.9 1.9E-25 4E-30 177.6 16.3 171 29-204 4-191 (296)
35 PHA02518 ParA-like protein; Pr 99.9 1.8E-25 4E-30 169.7 14.6 139 32-204 1-144 (211)
36 cd03110 Fer4_NifH_child This p 99.9 4.4E-25 9.6E-30 163.6 14.8 153 33-205 1-155 (179)
37 PRK13234 nifH nitrogenase redu 99.9 3.4E-25 7.4E-30 176.0 15.0 166 31-205 4-190 (295)
38 PRK13849 putative crown gall t 99.9 6.1E-25 1.3E-29 168.4 14.7 145 31-204 1-151 (231)
39 TIGR01287 nifH nitrogenase iro 99.9 8E-25 1.7E-29 172.7 15.5 169 32-204 1-185 (275)
40 cd02036 MinD Bacterial cell di 99.9 1E-24 2.2E-29 161.4 14.0 126 33-205 1-126 (179)
41 PRK13231 nitrogenase reductase 99.9 6.2E-25 1.4E-29 172.3 13.3 168 31-204 2-179 (264)
42 PRK13230 nitrogenase reductase 99.9 1.6E-24 3.6E-29 171.2 14.8 167 31-201 1-183 (279)
43 PF01656 CbiA: CobQ/CobB/MinD/ 99.9 3.8E-25 8.1E-30 165.8 9.9 156 34-205 1-160 (195)
44 PF06564 YhjQ: YhjQ protein; 99.9 2E-24 4.4E-29 164.5 12.0 165 31-205 1-175 (243)
45 PF07015 VirC1: VirC1 protein; 99.9 3.9E-23 8.5E-28 155.2 14.4 145 31-204 1-151 (231)
46 TIGR02016 BchX chlorophyllide 99.9 6E-23 1.3E-27 162.9 16.0 171 32-205 1-194 (296)
47 cd03111 CpaE_like This protein 99.9 8.3E-23 1.8E-27 138.5 13.2 102 33-202 1-106 (106)
48 COG3640 CooC CO dehydrogenase 99.9 1.6E-22 3.5E-27 150.5 15.0 166 33-205 2-197 (255)
49 cd02033 BchX Chlorophyllide re 99.9 8.9E-22 1.9E-26 157.2 16.7 170 27-205 27-219 (329)
50 cd02035 ArsA ArsA ATPase funct 99.9 2.5E-22 5.5E-27 153.1 11.1 161 34-205 1-182 (217)
51 cd02038 FleN-like FleN is a me 99.9 1.2E-21 2.7E-26 139.2 13.9 108 33-205 1-109 (139)
52 COG1149 MinD superfamily P-loo 99.9 1.5E-21 3.3E-26 148.2 14.5 167 31-203 1-224 (284)
53 cd00550 ArsA_ATPase Oxyanion-t 99.9 4.9E-22 1.1E-26 154.7 10.8 170 34-205 2-201 (254)
54 cd02042 ParA ParA and ParB of 99.9 5.5E-21 1.2E-25 129.3 12.9 99 33-201 1-104 (104)
55 PF13614 AAA_31: AAA domain; P 99.9 6.4E-22 1.4E-26 143.5 5.8 139 32-179 1-156 (157)
56 PF09140 MipZ: ATPase MipZ; I 99.8 1.4E-21 3.1E-26 147.4 3.1 133 32-176 1-133 (261)
57 PF00142 Fer4_NifH: 4Fe-4S iro 99.8 5.8E-19 1.3E-23 134.6 13.9 166 32-203 1-185 (273)
58 COG4963 CpaE Flp pilus assembl 99.8 1.6E-18 3.5E-23 137.8 14.4 171 27-206 100-284 (366)
59 COG1348 NifH Nitrogenase subun 99.8 1.9E-18 4.1E-23 128.4 13.7 167 31-204 1-187 (278)
60 PF02374 ArsA_ATPase: Anion-tr 99.7 4.7E-18 1E-22 135.3 7.9 168 32-203 2-246 (305)
61 COG0003 ArsA Predicted ATPase 99.7 2.1E-15 4.5E-20 120.1 12.7 169 34-204 4-247 (322)
62 cd03114 ArgK-like The function 99.7 7.5E-15 1.6E-19 105.2 14.4 146 34-204 2-148 (148)
63 TIGR00064 ftsY signal recognit 99.7 2.2E-15 4.8E-20 118.2 12.6 148 29-205 70-229 (272)
64 TIGR00347 bioD dethiobiotin sy 99.6 6.1E-15 1.3E-19 107.9 10.8 158 36-201 2-166 (166)
65 cd02034 CooC The accessory pro 99.6 2E-14 4.4E-19 98.6 9.1 113 34-170 2-115 (116)
66 PRK10867 signal recognition pa 99.6 7.6E-14 1.6E-18 115.5 13.9 147 31-206 100-253 (433)
67 PRK13768 GTPase; Provisional 99.6 5.5E-14 1.2E-18 109.5 12.0 161 30-205 1-174 (253)
68 cd03115 SRP The signal recogni 99.6 1.7E-13 3.7E-18 100.9 13.5 142 36-205 4-151 (173)
69 TIGR00959 ffh signal recogniti 99.5 8.9E-14 1.9E-18 115.0 12.8 148 32-206 99-252 (428)
70 cd01983 Fer4_NifH The Fer4_Nif 99.5 3E-13 6.5E-18 89.6 11.7 94 34-201 2-99 (99)
71 TIGR01425 SRP54_euk signal rec 99.5 2.1E-13 4.5E-18 112.3 13.1 147 31-206 100-252 (429)
72 PRK10416 signal recognition pa 99.5 2.9E-13 6.2E-18 108.4 13.6 147 30-205 113-271 (318)
73 PRK13886 conjugal transfer pro 99.5 6.3E-13 1.4E-17 101.7 14.7 47 30-77 1-47 (241)
74 PRK11889 flhF flagellar biosyn 99.5 5.8E-13 1.3E-17 107.8 12.4 143 30-205 240-389 (436)
75 PRK00771 signal recognition pa 99.5 7.4E-13 1.6E-17 109.9 12.2 146 30-206 94-245 (437)
76 PRK12726 flagellar biosynthesi 99.5 1.9E-12 4.1E-17 104.5 13.6 143 30-205 205-354 (407)
77 PRK00090 bioD dithiobiotin syn 99.5 1.1E-12 2.3E-17 100.5 11.3 163 34-205 2-174 (222)
78 PF00448 SRP54: SRP54-type pro 99.4 7.3E-12 1.6E-16 93.8 11.7 146 31-205 1-152 (196)
79 COG0132 BioD Dethiobiotin synt 99.4 3.1E-11 6.7E-16 91.2 14.3 169 30-205 1-177 (223)
80 KOG2825 Putative arsenite-tran 99.4 7.7E-12 1.7E-16 94.4 9.9 168 32-203 19-263 (323)
81 PRK14974 cell division protein 99.3 2.5E-11 5.5E-16 97.6 12.4 147 30-205 139-291 (336)
82 PRK12724 flagellar biosynthesi 99.3 3E-11 6.6E-16 99.0 12.6 140 31-205 223-371 (432)
83 PRK12727 flagellar biosynthesi 99.3 4.7E-11 1E-15 100.2 13.5 142 29-205 348-496 (559)
84 PRK12374 putative dithiobiotin 99.3 1.1E-10 2.3E-15 89.9 14.4 163 31-205 2-176 (231)
85 PRK05703 flhF flagellar biosyn 99.3 1.5E-11 3.3E-16 102.1 10.0 141 31-205 221-369 (424)
86 PRK01077 cobyrinic acid a,c-di 99.3 1.5E-10 3.2E-15 97.4 15.0 143 31-205 3-156 (451)
87 COG0541 Ffh Signal recognition 99.3 9.4E-11 2E-15 95.3 12.7 147 31-206 100-252 (451)
88 TIGR00750 lao LAO/AO transport 99.3 3.8E-10 8.2E-15 90.2 15.7 152 29-205 32-184 (300)
89 COG1703 ArgK Putative periplas 99.3 2.7E-10 5.9E-15 88.5 14.0 150 28-205 48-201 (323)
90 PRK12723 flagellar biosynthesi 99.3 1.4E-10 2.9E-15 95.1 13.1 141 31-205 174-324 (388)
91 PF13500 AAA_26: AAA domain; P 99.2 7.9E-11 1.7E-15 88.6 9.9 158 32-205 1-170 (199)
92 PRK14493 putative bifunctional 99.2 7.1E-11 1.5E-15 92.7 9.9 129 31-183 1-132 (274)
93 PRK09435 membrane ATPase/prote 99.2 5.4E-10 1.2E-14 89.8 14.8 151 29-205 54-206 (332)
94 KOG0780 Signal recognition par 99.2 1.5E-10 3.2E-15 92.5 8.6 146 30-205 100-252 (483)
95 PRK06731 flhF flagellar biosyn 99.2 7.3E-10 1.6E-14 86.7 12.2 143 30-205 74-223 (270)
96 TIGR00345 arsA arsenite-activa 99.2 4.8E-10 1E-14 88.9 11.0 41 165-205 190-230 (284)
97 PF03308 ArgK: ArgK protein; 99.1 1.3E-10 2.9E-15 88.9 6.8 149 29-204 27-178 (266)
98 COG1419 FlhF Flagellar GTP-bin 99.1 6.2E-10 1.3E-14 90.3 11.0 140 31-204 203-349 (407)
99 PRK14723 flhF flagellar biosyn 99.1 1.2E-09 2.5E-14 95.7 13.2 143 31-205 185-335 (767)
100 PRK05632 phosphate acetyltrans 99.1 1.1E-09 2.4E-14 96.4 11.9 139 30-202 1-149 (684)
101 TIGR03499 FlhF flagellar biosy 99.1 3E-10 6.4E-15 89.9 7.3 43 30-74 193-237 (282)
102 PF10609 ParA: ParA/MinD ATPas 99.1 6.3E-10 1.4E-14 70.3 6.8 64 141-204 2-65 (81)
103 PRK00784 cobyric acid synthase 99.1 4.2E-09 9.1E-14 89.5 13.6 171 30-205 1-200 (488)
104 KOG1532 GTPase XAB1, interacts 99.1 1.4E-09 3.1E-14 83.5 9.4 158 31-204 19-192 (366)
105 cd03109 DTBS Dethiobiotin synt 99.0 8.5E-09 1.8E-13 72.7 12.4 98 40-205 7-109 (134)
106 TIGR00313 cobQ cobyric acid sy 99.0 1.3E-08 2.8E-13 86.1 15.5 166 34-205 1-197 (475)
107 PRK14722 flhF flagellar biosyn 99.0 3.8E-09 8.2E-14 86.1 11.6 144 30-205 136-293 (374)
108 COG0552 FtsY Signal recognitio 98.9 3.2E-08 6.9E-13 78.4 11.9 147 29-206 137-297 (340)
109 TIGR00379 cobB cobyrinic acid 98.9 6.4E-08 1.4E-12 81.5 13.7 141 34-205 2-152 (449)
110 PF03029 ATP_bind_1: Conserved 98.9 1E-09 2.3E-14 84.6 2.6 149 39-204 3-167 (238)
111 PRK13896 cobyrinic acid a,c-di 98.9 1.2E-07 2.5E-12 79.0 14.6 143 31-205 1-151 (433)
112 PRK06995 flhF flagellar biosyn 98.9 3E-08 6.4E-13 83.3 10.9 141 31-205 256-403 (484)
113 PRK13505 formate--tetrahydrofo 98.8 9.8E-09 2.1E-13 86.2 6.6 74 9-86 32-109 (557)
114 COG1797 CobB Cobyrinic acid a, 98.8 1.5E-07 3.3E-12 76.9 12.8 141 33-205 2-153 (451)
115 PRK06278 cobyrinic acid a,c-di 98.8 1.3E-07 2.8E-12 79.6 12.8 146 29-205 236-395 (476)
116 KOG0781 Signal recognition par 98.7 5.5E-08 1.2E-12 80.0 8.8 157 28-204 375-541 (587)
117 PRK14721 flhF flagellar biosyn 98.5 1.9E-06 4.1E-11 71.5 12.6 141 30-205 190-338 (420)
118 cd00477 FTHFS Formyltetrahydro 98.5 4.2E-07 9E-12 75.8 6.7 53 30-86 37-92 (524)
119 KOG1533 Predicted GTPase [Gene 98.4 5.9E-07 1.3E-11 67.8 5.9 101 38-151 8-108 (290)
120 PRK13506 formate--tetrahydrofo 98.4 7E-07 1.5E-11 75.2 6.9 53 30-86 53-108 (578)
121 COG1341 Predicted GTPase or GT 98.4 5E-06 1.1E-10 67.6 10.2 107 31-151 73-183 (398)
122 PLN02974 adenosylmethionine-8- 98.3 2.5E-05 5.4E-10 70.1 13.9 65 138-202 183-252 (817)
123 cd01884 EF_Tu EF-Tu subfamily. 98.3 1.3E-05 2.8E-10 60.1 9.9 68 138-205 63-130 (195)
124 cd04170 EF-G_bact Elongation f 98.2 5.4E-06 1.2E-10 65.3 8.1 67 138-205 62-128 (268)
125 cd04169 RF3 RF3 subfamily. Pe 98.2 1E-05 2.2E-10 63.7 9.5 67 138-205 69-135 (267)
126 cd01886 EF-G Elongation factor 98.2 1.4E-05 3E-10 63.0 10.0 67 138-205 62-128 (270)
127 COG1763 MobB Molybdopterin-gua 98.1 2E-05 4.3E-10 56.9 8.5 42 30-73 1-42 (161)
128 PRK14494 putative molybdopteri 98.1 4.1E-05 8.8E-10 58.6 10.3 38 31-70 1-38 (229)
129 cd00881 GTP_translation_factor 98.1 1.7E-05 3.6E-10 58.6 8.1 66 139-205 61-126 (189)
130 TIGR00176 mobB molybdopterin-g 98.1 1.6E-05 3.5E-10 57.4 7.6 38 33-72 1-38 (155)
131 cd04168 TetM_like Tet(M)-like 98.1 2.9E-05 6.3E-10 60.0 9.3 67 138-205 62-128 (237)
132 COG0529 CysC Adenylylsulfate k 98.1 6E-06 1.3E-10 59.9 4.8 59 28-88 20-78 (197)
133 PF00009 GTP_EFTU: Elongation 98.1 1.8E-05 3.8E-10 59.0 7.4 67 138-205 68-134 (188)
134 cd03112 CobW_like The function 98.1 0.00017 3.6E-09 52.2 12.3 143 35-204 3-157 (158)
135 TIGR00503 prfC peptide chain r 98.0 4.6E-05 9.9E-10 65.5 9.6 67 138-205 78-144 (527)
136 PRK00741 prfC peptide chain re 98.0 4.5E-05 9.8E-10 65.5 9.5 67 138-205 77-143 (526)
137 PRK08233 hypothetical protein; 98.0 6.6E-05 1.4E-09 55.3 9.2 37 31-71 3-39 (182)
138 cd04167 Snu114p Snu114p subfam 98.0 5.4E-05 1.2E-09 57.5 8.9 67 138-205 69-135 (213)
139 PRK09361 radB DNA repair and r 98.0 2E-05 4.3E-10 60.4 6.3 38 31-70 23-60 (225)
140 cd01124 KaiC KaiC is a circadi 98.0 6.1E-05 1.3E-09 55.8 8.7 40 35-75 2-41 (187)
141 PRK14495 putative molybdopteri 98.0 5.5E-05 1.2E-09 62.7 9.0 38 31-70 1-38 (452)
142 PRK00889 adenylylsulfate kinas 98.0 1.2E-05 2.7E-10 59.1 4.9 41 31-73 4-44 (175)
143 cd01885 EF2 EF2 (for archaea a 98.0 8.6E-05 1.9E-09 56.8 9.3 67 138-205 71-137 (222)
144 cd04165 GTPBP1_like GTPBP1-lik 97.9 4.8E-05 1E-09 58.3 7.8 67 138-205 82-150 (224)
145 cd01887 IF2_eIF5B IF2/eIF5B (i 97.9 9E-05 1.9E-09 53.6 8.6 67 138-205 48-114 (168)
146 COG1492 CobQ Cobyric acid synt 97.9 3.2E-05 6.9E-10 64.6 6.6 171 32-206 2-201 (486)
147 cd04163 Era Era subfamily. Er 97.9 0.00021 4.6E-09 51.1 10.4 66 139-205 50-123 (168)
148 TIGR00073 hypB hydrogenase acc 97.9 0.00028 6.1E-09 53.4 11.1 41 29-72 20-60 (207)
149 TIGR00490 aEF-2 translation el 97.9 4.5E-05 9.8E-10 68.1 7.6 67 138-205 84-150 (720)
150 COG2403 Predicted GTPase [Gene 97.9 0.00016 3.5E-09 58.3 9.6 38 31-69 126-163 (449)
151 cd01120 RecA-like_NTPases RecA 97.9 9.1E-05 2E-09 53.2 7.7 39 36-75 3-41 (165)
152 PRK12740 elongation factor G; 97.9 7.5E-05 1.6E-09 66.3 8.5 67 138-205 58-124 (668)
153 PF02492 cobW: CobW/HypB/UreG, 97.8 0.00015 3.3E-09 53.5 8.7 141 35-205 3-153 (178)
154 PLN03127 Elongation factor Tu; 97.8 0.00034 7.4E-09 59.0 11.8 68 138-205 122-189 (447)
155 PF01583 APS_kinase: Adenylyls 97.8 6.1E-05 1.3E-09 54.2 6.0 49 31-81 2-50 (156)
156 TIGR02237 recomb_radB DNA repa 97.8 5.9E-05 1.3E-09 57.0 6.3 39 31-71 12-50 (209)
157 PRK00007 elongation factor G; 97.8 0.00012 2.7E-09 65.1 9.1 67 138-205 73-139 (693)
158 PHA02542 41 41 helicase; Provi 97.8 1.5E-05 3.2E-10 67.5 3.0 47 32-79 190-236 (473)
159 COG1160 Predicted GTPases [Gen 97.8 0.00032 7E-09 58.1 10.4 68 138-206 49-125 (444)
160 PF03205 MobB: Molybdopterin g 97.8 9.6E-05 2.1E-09 52.4 6.5 42 32-75 1-43 (140)
161 PRK00049 elongation factor Tu; 97.8 0.00023 4.9E-09 59.3 9.7 68 138-205 73-140 (396)
162 cd01894 EngA1 EngA1 subfamily. 97.8 0.00032 6.9E-09 49.9 9.2 67 138-205 43-117 (157)
163 PRK12739 elongation factor G; 97.8 0.00017 3.6E-09 64.2 9.2 67 138-205 71-137 (691)
164 PRK10218 GTP-binding protein; 97.7 0.00034 7.3E-09 61.1 10.5 67 138-205 66-132 (607)
165 PRK00089 era GTPase Era; Revie 97.7 0.00065 1.4E-08 54.1 11.4 67 138-205 51-125 (292)
166 PRK04296 thymidine kinase; Pro 97.7 0.00014 3.1E-09 54.3 7.0 36 31-68 2-37 (190)
167 COG1159 Era GTPase [General fu 97.7 0.00018 3.8E-09 56.5 7.5 111 33-205 8-126 (298)
168 PRK07667 uridine kinase; Provi 97.7 0.00013 2.8E-09 54.6 6.2 40 31-72 17-56 (193)
169 PRK05480 uridine/cytidine kina 97.7 0.0016 3.5E-08 49.2 12.1 41 29-73 4-44 (209)
170 TIGR01394 TypA_BipA GTP-bindin 97.7 0.00028 6.1E-09 61.5 8.8 67 138-205 62-128 (594)
171 KOG1534 Putative transcription 97.6 0.00013 2.8E-09 54.5 5.6 45 32-77 3-47 (273)
172 PRK00093 GTP-binding protein D 97.6 0.0006 1.3E-08 57.4 10.4 67 138-205 47-121 (435)
173 TIGR00484 EF-G translation elo 97.6 0.00043 9.3E-09 61.7 9.9 67 138-205 73-139 (689)
174 PRK10751 molybdopterin-guanine 97.6 0.00052 1.1E-08 50.3 8.4 41 30-72 5-45 (173)
175 cd01891 TypA_BipA TypA (tyrosi 97.6 0.00071 1.5E-08 50.5 9.0 67 138-205 63-129 (194)
176 cd04171 SelB SelB subfamily. 97.6 0.0004 8.6E-09 49.9 7.5 66 139-204 50-115 (164)
177 PF13481 AAA_25: AAA domain; P 97.6 5.6E-05 1.2E-09 56.3 3.0 45 34-78 34-87 (193)
178 PRK06067 flagellar accessory p 97.6 0.00032 6.9E-09 54.1 7.2 40 31-72 25-64 (234)
179 COG0857 Pta BioD-like N-termin 97.6 0.0011 2.4E-08 54.0 10.5 38 30-68 1-38 (354)
180 cd03116 MobB Molybdenum is an 97.6 0.00024 5.1E-09 51.5 6.1 41 31-73 1-41 (159)
181 PRK08533 flagellar accessory p 97.6 0.002 4.4E-08 49.6 11.5 41 31-73 24-64 (230)
182 TIGR00708 cobA cob(I)alamin ad 97.6 0.00063 1.4E-08 49.8 8.1 36 31-69 6-41 (173)
183 cd00561 CobA_CobO_BtuR ATP:cor 97.5 0.00072 1.6E-08 48.9 8.2 33 34-68 5-37 (159)
184 PRK06696 uridine kinase; Valid 97.5 0.00024 5.3E-09 54.4 6.0 41 31-73 22-62 (223)
185 smart00382 AAA ATPases associa 97.5 0.00024 5.2E-09 49.2 5.6 42 31-74 2-43 (148)
186 cd01394 radB RadB. The archaea 97.5 0.00023 5E-09 54.2 5.8 41 31-73 19-59 (218)
187 cd01125 repA Hexameric Replica 97.5 0.00028 6.1E-09 54.6 6.3 44 34-77 3-57 (239)
188 TIGR00485 EF-Tu translation el 97.5 0.001 2.2E-08 55.4 9.9 68 138-205 73-140 (394)
189 cd03113 CTGs CTP synthetase (C 97.5 0.0042 9.2E-08 47.7 12.2 162 37-202 7-211 (255)
190 COG1066 Sms Predicted ATP-depe 97.5 0.0002 4.3E-09 58.7 5.4 38 31-71 93-130 (456)
191 PRK12735 elongation factor Tu; 97.5 0.0011 2.3E-08 55.3 9.8 68 138-205 73-140 (396)
192 CHL00071 tufA elongation facto 97.5 0.0015 3.2E-08 54.7 10.6 68 138-205 73-140 (409)
193 PRK03846 adenylylsulfate kinas 97.5 0.0023 5.1E-08 48.0 10.8 44 28-73 21-64 (198)
194 PRK12736 elongation factor Tu; 97.5 0.00092 2E-08 55.6 9.4 68 138-205 73-140 (394)
195 PTZ00416 elongation factor 2; 97.5 0.00052 1.1E-08 62.3 8.2 67 138-205 90-156 (836)
196 TIGR00436 era GTP-binding prot 97.5 0.0023 4.9E-08 50.5 10.9 66 138-205 46-119 (270)
197 cd02027 APSK Adenosine 5'-phos 97.5 0.0016 3.5E-08 46.6 9.1 38 34-73 2-39 (149)
198 PRK11537 putative GTP-binding 97.4 0.0022 4.8E-08 51.7 10.7 144 34-205 6-162 (318)
199 PRK05973 replicative DNA helic 97.4 0.00034 7.3E-09 53.9 5.5 42 33-75 65-106 (237)
200 PRK13351 elongation factor G; 97.4 0.00081 1.8E-08 59.9 8.6 67 138-205 71-137 (687)
201 TIGR03877 thermo_KaiC_1 KaiC d 97.4 0.00085 1.9E-08 51.9 7.7 43 31-75 21-63 (237)
202 PF02606 LpxK: Tetraacyldisacc 97.4 0.0056 1.2E-07 49.6 12.5 42 31-73 35-77 (326)
203 PLN03126 Elongation factor Tu; 97.4 0.0018 3.9E-08 55.1 10.0 68 138-205 142-209 (478)
204 PLN00043 elongation factor 1-a 97.4 0.00091 2E-08 56.5 8.1 68 138-205 83-157 (447)
205 cd00880 Era_like Era (E. coli 97.4 0.002 4.3E-08 45.4 8.9 66 139-205 44-116 (163)
206 TIGR03881 KaiC_arch_4 KaiC dom 97.4 0.0006 1.3E-08 52.3 6.3 41 31-73 20-60 (229)
207 PRK11823 DNA repair protein Ra 97.3 0.00062 1.4E-08 57.5 6.8 37 34-71 82-118 (446)
208 PF00154 RecA: recA bacterial 97.3 0.0027 5.9E-08 51.1 9.9 40 31-72 53-92 (322)
209 TIGR02475 CobW cobalamin biosy 97.3 0.0078 1.7E-07 49.1 12.7 123 34-175 6-135 (341)
210 cd02028 UMPK_like Uridine mono 97.3 0.0004 8.7E-09 51.3 4.8 38 34-73 2-39 (179)
211 PRK05595 replicative DNA helic 97.3 0.00022 4.8E-09 60.2 3.7 41 33-73 202-242 (444)
212 PRK15453 phosphoribulokinase; 97.3 0.00064 1.4E-08 53.5 5.7 44 29-74 3-46 (290)
213 cd01121 Sms Sms (bacterial rad 97.3 0.001 2.2E-08 54.8 7.0 38 33-71 83-120 (372)
214 PRK10463 hydrogenase nickel in 97.3 0.0027 5.8E-08 50.3 9.0 95 29-151 102-196 (290)
215 cd01393 recA_like RecA is a b 97.2 0.0014 3E-08 50.1 7.2 40 31-72 19-64 (226)
216 TIGR00682 lpxK tetraacyldisacc 97.2 0.0053 1.2E-07 49.3 10.7 42 31-73 28-70 (311)
217 PF07755 DUF1611: Protein of u 97.2 0.0065 1.4E-07 48.4 11.0 139 30-203 111-267 (301)
218 PRK14491 putative bifunctional 97.2 0.0018 3.9E-08 56.6 8.5 40 30-71 9-48 (597)
219 PRK04328 hypothetical protein; 97.2 0.0013 2.8E-08 51.3 7.0 41 31-73 23-63 (249)
220 PRK00652 lpxK tetraacyldisacch 97.2 0.0061 1.3E-07 49.3 10.7 42 31-73 49-91 (325)
221 PRK07952 DNA replication prote 97.2 0.0007 1.5E-08 52.5 5.1 34 35-69 102-135 (244)
222 KOG0635 Adenosine 5'-phosphosu 97.2 0.002 4.4E-08 45.7 6.8 56 29-86 29-84 (207)
223 PRK07560 elongation factor EF- 97.2 0.0012 2.5E-08 59.4 7.1 67 138-205 85-151 (731)
224 TIGR02655 circ_KaiC circadian 97.2 0.001 2.2E-08 56.9 6.5 42 33-75 264-305 (484)
225 PRK12317 elongation factor 1-a 97.2 0.0023 5E-08 53.8 8.5 68 138-205 82-151 (425)
226 cd02023 UMPK Uridine monophosp 97.2 0.011 2.4E-07 44.2 11.3 37 33-73 1-37 (198)
227 PF13479 AAA_24: AAA domain 97.2 0.0026 5.6E-08 48.4 7.9 31 33-73 5-35 (213)
228 TIGR03878 thermo_KaiC_2 KaiC d 97.2 0.00088 1.9E-08 52.5 5.4 39 31-71 36-74 (259)
229 TIGR00416 sms DNA repair prote 97.2 0.0014 3E-08 55.5 6.9 39 31-71 94-132 (454)
230 PRK14489 putative bifunctional 97.1 0.0029 6.3E-08 52.2 8.5 41 30-72 204-244 (366)
231 TIGR03594 GTPase_EngA ribosome 97.1 0.0032 7E-08 52.9 8.9 67 138-205 45-119 (429)
232 PF06745 KaiC: KaiC; InterPro 97.1 0.00061 1.3E-08 52.2 4.1 41 31-73 19-60 (226)
233 cd01882 BMS1 Bms1. Bms1 is an 97.1 0.0064 1.4E-07 46.6 9.7 64 139-205 82-145 (225)
234 COG0467 RAD55 RecA-superfamily 97.1 0.0018 3.9E-08 50.7 6.9 45 31-77 23-67 (260)
235 PRK09270 nucleoside triphospha 97.1 0.018 3.9E-07 44.2 12.2 40 30-71 32-72 (229)
236 COG0468 RecA RecA/RadA recombi 97.1 0.0086 1.9E-07 47.3 10.4 39 31-71 60-98 (279)
237 TIGR00235 udk uridine kinase. 97.1 0.012 2.6E-07 44.4 11.0 39 30-72 5-43 (207)
238 PRK03003 GTP-binding protein D 97.1 0.0047 1E-07 52.7 9.4 67 138-205 84-158 (472)
239 PLN00116 translation elongatio 97.1 0.0014 3.1E-08 59.6 6.6 68 138-206 96-163 (843)
240 PRK05433 GTP-binding protein L 97.1 0.0043 9.4E-08 54.4 9.3 67 138-205 72-138 (600)
241 COG0523 Putative GTPases (G3E 97.1 0.036 7.8E-07 44.9 13.8 140 35-204 4-156 (323)
242 PF13245 AAA_19: Part of AAA d 97.1 0.0017 3.7E-08 40.9 5.0 35 34-69 12-50 (76)
243 TIGR02012 tigrfam_recA protein 97.0 0.0014 3.1E-08 52.7 5.7 39 31-71 55-93 (321)
244 CHL00189 infB translation init 97.0 0.003 6.5E-08 56.4 8.1 67 138-205 293-359 (742)
245 cd02029 PRK_like Phosphoribulo 97.0 0.0012 2.6E-08 51.6 5.0 40 33-74 1-40 (277)
246 TIGR00455 apsK adenylylsulfate 97.0 0.0037 7.9E-08 46.3 7.4 44 28-73 15-58 (184)
247 KOG2743 Cobalamin synthesis pr 97.0 0.009 2E-07 47.2 9.5 120 34-175 59-189 (391)
248 cd01123 Rad51_DMC1_radA Rad51_ 97.0 0.0011 2.4E-08 50.9 4.6 40 31-72 19-64 (235)
249 TIGR03575 selen_PSTK_euk L-ser 97.0 0.0012 2.5E-08 53.7 4.7 40 35-74 2-41 (340)
250 cd01122 GP4d_helicase GP4d_hel 97.0 0.0015 3.3E-08 51.4 5.3 40 34-73 32-71 (271)
251 COG3598 RepA RecA-family ATPas 97.0 0.0028 6E-08 50.6 6.5 106 33-149 90-204 (402)
252 TIGR01618 phage_P_loop phage n 97.0 0.0037 8.1E-08 47.7 7.0 34 31-73 12-45 (220)
253 PF08433 KTI12: Chromatin asso 97.0 0.0018 3.8E-08 51.1 5.4 38 32-71 2-39 (270)
254 KOG1805 DNA replication helica 96.9 0.0018 3.8E-08 58.2 5.7 38 31-69 684-721 (1100)
255 cd00984 DnaB_C DnaB helicase C 96.9 0.0018 3.9E-08 50.0 5.1 42 31-73 13-54 (242)
256 PRK05986 cob(I)alamin adenolsy 96.9 0.011 2.3E-07 44.0 8.7 32 38-70 28-59 (191)
257 TIGR01393 lepA GTP-binding pro 96.9 0.0076 1.6E-07 52.9 9.2 67 138-205 68-134 (595)
258 KOG0744 AAA+-type ATPase [Post 96.9 0.0049 1.1E-07 49.3 7.1 150 32-192 178-347 (423)
259 TIGR02238 recomb_DMC1 meiotic 96.9 0.0021 4.6E-08 51.7 5.3 41 31-72 96-141 (313)
260 TIGR03574 selen_PSTK L-seryl-t 96.9 0.0016 3.5E-08 50.7 4.5 36 36-72 3-38 (249)
261 PRK05439 pantothenate kinase; 96.9 0.0031 6.6E-08 50.6 6.0 44 29-73 84-128 (311)
262 PRK10512 selenocysteinyl-tRNA- 96.8 0.0042 9.1E-08 54.6 7.3 66 140-205 51-116 (614)
263 PRK05541 adenylylsulfate kinas 96.8 0.0033 7.1E-08 46.2 5.7 40 30-71 6-45 (176)
264 cd04139 RalA_RalB RalA/RalB su 96.8 0.023 4.9E-07 40.6 10.0 67 138-205 46-117 (164)
265 TIGR03880 KaiC_arch_3 KaiC dom 96.8 0.0036 7.9E-08 47.8 6.0 41 31-73 16-56 (224)
266 PF13207 AAA_17: AAA domain; P 96.8 0.0022 4.7E-08 43.9 4.2 32 33-69 1-32 (121)
267 PF01695 IstB_IS21: IstB-like 96.8 0.0021 4.6E-08 47.4 4.3 38 31-70 47-84 (178)
268 PF03796 DnaB_C: DnaB-like hel 96.8 0.0032 6.9E-08 49.3 5.5 42 33-74 20-61 (259)
269 PRK06762 hypothetical protein; 96.8 0.0027 5.9E-08 46.1 4.8 39 30-73 1-39 (166)
270 PRK09519 recA DNA recombinatio 96.8 0.0043 9.2E-08 55.6 6.7 41 31-73 60-100 (790)
271 cd00983 recA RecA is a bacter 96.8 0.0031 6.7E-08 50.9 5.4 39 31-71 55-93 (325)
272 cd01878 HflX HflX subfamily. 96.8 0.027 5.9E-07 42.2 10.4 67 138-205 87-165 (204)
273 COG1484 DnaC DNA replication p 96.7 0.0032 6.8E-08 49.2 5.2 38 31-70 105-142 (254)
274 PRK09165 replicative DNA helic 96.7 0.0016 3.5E-08 55.8 3.8 44 33-76 218-275 (497)
275 PF00485 PRK: Phosphoribulokin 96.7 0.0026 5.7E-08 47.6 4.3 37 33-71 1-41 (194)
276 PRK09302 circadian clock prote 96.7 0.0066 1.4E-07 52.3 7.2 45 31-77 31-76 (509)
277 smart00053 DYNc Dynamin, GTPas 96.7 0.059 1.3E-06 41.8 11.7 66 139-205 124-204 (240)
278 COG3367 Uncharacterized conser 96.7 0.049 1.1E-06 43.5 11.2 140 29-202 146-297 (339)
279 cd00882 Ras_like_GTPase Ras-li 96.7 0.0044 9.4E-08 43.1 5.1 67 138-205 43-114 (157)
280 TIGR00475 selB selenocysteine- 96.7 0.0043 9.3E-08 54.2 6.0 67 139-205 49-115 (581)
281 PRK14733 coaE dephospho-CoA ki 96.6 0.0013 2.8E-08 49.6 2.4 38 31-75 6-43 (204)
282 PHA00729 NTP-binding motif con 96.6 0.0051 1.1E-07 47.0 5.6 26 31-57 17-42 (226)
283 TIGR00101 ureG urease accessor 96.6 0.025 5.4E-07 42.6 9.3 39 32-73 2-40 (199)
284 cd04125 RabA_like RabA-like su 96.6 0.04 8.8E-07 40.7 10.2 68 138-205 47-117 (188)
285 PRK09518 bifunctional cytidyla 96.6 0.024 5.2E-07 50.9 10.3 67 138-205 321-395 (712)
286 COG1618 Predicted nucleotide k 96.6 0.0059 1.3E-07 44.0 5.2 36 30-67 4-39 (179)
287 COG4108 PrfC Peptide chain rel 96.6 0.013 2.9E-07 48.6 7.8 68 138-206 79-146 (528)
288 TIGR03600 phage_DnaB phage rep 96.5 0.0051 1.1E-07 51.7 5.3 40 34-73 196-235 (421)
289 PF06418 CTP_synth_N: CTP synt 96.5 0.059 1.3E-06 42.0 10.4 167 32-204 2-213 (276)
290 COG4088 Predicted nucleotide k 96.5 0.0034 7.3E-08 47.1 3.5 40 33-74 3-42 (261)
291 PRK09354 recA recombinase A; P 96.5 0.0065 1.4E-07 49.5 5.4 39 31-71 60-98 (349)
292 PRK06526 transposase; Provisio 96.5 0.0023 4.9E-08 50.0 2.7 37 31-69 98-134 (254)
293 PRK04004 translation initiatio 96.4 0.018 3.9E-07 50.4 8.4 64 141-205 72-135 (586)
294 PRK12377 putative replication 96.4 0.0066 1.4E-07 47.3 5.1 37 32-70 102-138 (248)
295 PRK13507 formate--tetrahydrofo 96.4 0.0077 1.7E-07 51.4 5.7 51 30-84 62-115 (587)
296 PLN03187 meiotic recombination 96.4 0.013 2.9E-07 47.7 7.0 40 33-72 127-171 (344)
297 PRK07414 cob(I)yrinic acid a,c 96.4 0.022 4.7E-07 41.9 7.3 37 31-70 22-58 (178)
298 cd04166 CysN_ATPS CysN_ATPS su 96.4 0.0089 1.9E-07 45.2 5.6 68 138-205 75-142 (208)
299 PF01268 FTHFS: Formate--tetra 96.4 0.0044 9.5E-08 52.9 4.2 53 28-84 51-106 (557)
300 KOG2749 mRNA cleavage and poly 96.4 0.0095 2.1E-07 48.1 5.7 45 31-77 103-147 (415)
301 COG1102 Cmk Cytidylate kinase 96.4 0.0038 8.2E-08 44.9 3.2 25 33-58 2-26 (179)
302 PRK11058 GTPase HflX; Provisio 96.3 0.084 1.8E-06 44.5 11.5 64 141-205 246-321 (426)
303 cd00157 Rho Rho (Ras homology) 96.3 0.015 3.3E-07 41.9 6.4 67 138-205 46-116 (171)
304 PRK08760 replicative DNA helic 96.3 0.0068 1.5E-07 51.7 5.1 41 33-73 230-270 (476)
305 cd02019 NK Nucleoside/nucleoti 96.3 0.0097 2.1E-07 36.6 4.6 32 34-69 2-33 (69)
306 TIGR00041 DTMP_kinase thymidyl 96.3 0.011 2.4E-07 44.0 5.6 37 31-69 3-39 (195)
307 TIGR00665 DnaB replicative DNA 96.2 0.0094 2E-07 50.3 5.4 41 34-74 197-237 (434)
308 PRK08506 replicative DNA helic 96.2 0.0099 2.1E-07 50.7 5.6 41 33-74 193-233 (472)
309 PRK05642 DNA replication initi 96.2 0.0086 1.9E-07 46.2 4.7 35 36-71 49-83 (234)
310 PRK06835 DNA replication prote 96.2 0.0088 1.9E-07 48.5 4.9 38 32-71 184-221 (329)
311 PLN02924 thymidylate kinase 96.2 0.014 3E-07 44.7 5.6 40 27-68 12-51 (220)
312 COG0050 TufB GTPases - transla 96.2 0.012 2.5E-07 46.6 5.2 67 138-204 73-139 (394)
313 COG2759 MIS1 Formyltetrahydrof 96.2 0.0076 1.6E-07 50.1 4.3 52 29-84 50-104 (554)
314 PRK08939 primosomal protein Dn 96.1 0.011 2.3E-07 47.6 5.1 38 31-70 156-193 (306)
315 PRK13949 shikimate kinase; Pro 96.1 0.032 6.9E-07 40.8 7.2 33 32-71 2-34 (169)
316 PRK12298 obgE GTPase CgtA; Rev 96.1 0.073 1.6E-06 44.3 10.0 63 141-204 208-286 (390)
317 PRK09183 transposase/IS protei 96.1 0.011 2.4E-07 46.3 5.0 37 31-69 102-138 (259)
318 PRK08727 hypothetical protein; 96.1 0.011 2.3E-07 45.7 4.8 37 33-71 43-79 (233)
319 PRK06893 DNA replication initi 96.1 0.01 2.3E-07 45.6 4.7 35 35-70 42-76 (229)
320 cd02025 PanK Pantothenate kina 96.1 0.01 2.2E-07 45.4 4.5 40 33-73 1-41 (220)
321 cd01672 TMPK Thymidine monopho 96.1 0.014 3E-07 43.3 5.2 35 33-69 2-36 (200)
322 PRK08006 replicative DNA helic 96.1 0.012 2.7E-07 50.0 5.4 41 33-73 225-265 (471)
323 cd00544 CobU Adenosylcobinamid 96.1 0.013 2.9E-07 42.8 4.9 32 35-70 2-33 (169)
324 cd01883 EF1_alpha Eukaryotic e 96.1 0.01 2.2E-07 45.2 4.4 68 138-205 75-149 (219)
325 PRK06749 replicative DNA helic 96.1 0.012 2.6E-07 49.6 5.2 39 34-73 188-226 (428)
326 PRK06904 replicative DNA helic 96.0 0.015 3.2E-07 49.7 5.6 40 34-73 223-262 (472)
327 PRK05748 replicative DNA helic 96.0 0.012 2.6E-07 49.9 5.2 44 31-75 203-246 (448)
328 TIGR00554 panK_bact pantothena 96.0 0.017 3.7E-07 46.0 5.6 43 30-73 61-104 (290)
329 PTZ00141 elongation factor 1- 96.0 0.011 2.4E-07 50.0 4.8 68 138-205 83-157 (446)
330 PTZ00035 Rad51 protein; Provis 96.0 0.031 6.6E-07 45.6 7.1 41 31-72 118-163 (337)
331 COG4240 Predicted kinase [Gene 96.0 0.016 3.6E-07 44.1 5.0 42 28-71 47-89 (300)
332 PRK08840 replicative DNA helic 96.0 0.016 3.5E-07 49.3 5.6 41 33-73 218-258 (464)
333 PRK08903 DnaA regulatory inact 96.0 0.015 3.3E-07 44.5 5.0 39 32-72 43-81 (227)
334 PTZ00301 uridine kinase; Provi 96.0 0.019 4.1E-07 43.6 5.4 42 31-73 3-45 (210)
335 COG1663 LpxK Tetraacyldisaccha 96.0 0.081 1.8E-06 42.7 9.1 42 31-73 47-89 (336)
336 PF01935 DUF87: Domain of unkn 95.9 0.016 3.6E-07 44.3 5.1 41 31-73 23-64 (229)
337 PLN03186 DNA repair protein RA 95.9 0.017 3.8E-07 47.1 5.4 40 33-72 124-168 (342)
338 PLN03046 D-glycerate 3-kinase; 95.9 0.018 4E-07 48.0 5.5 41 30-72 211-251 (460)
339 PF02421 FeoB_N: Ferrous iron 95.9 0.025 5.4E-07 40.8 5.5 64 138-204 45-116 (156)
340 PLN03118 Rab family protein; P 95.9 0.11 2.3E-06 39.3 9.3 66 139-205 61-132 (211)
341 PF12846 AAA_10: AAA-like doma 95.9 0.015 3.2E-07 46.1 4.9 33 37-70 6-38 (304)
342 PRK08116 hypothetical protein; 95.9 0.016 3.5E-07 45.7 4.9 35 35-70 117-151 (268)
343 PRK08181 transposase; Validate 95.9 0.013 2.9E-07 46.1 4.4 37 32-70 107-143 (269)
344 PF00350 Dynamin_N: Dynamin fa 95.9 0.018 4E-07 41.6 4.9 66 138-203 99-168 (168)
345 cd00009 AAA The AAA+ (ATPases 95.8 0.02 4.4E-07 39.7 4.9 41 31-73 19-59 (151)
346 PRK08084 DNA replication initi 95.8 0.018 3.9E-07 44.5 4.9 38 32-71 46-83 (235)
347 PRK06921 hypothetical protein; 95.8 0.018 4E-07 45.3 5.0 37 31-69 117-154 (266)
348 PRK06321 replicative DNA helic 95.8 0.019 4.1E-07 49.0 5.4 42 33-74 227-268 (472)
349 TIGR03420 DnaA_homol_Hda DnaA 95.8 0.018 3.8E-07 43.9 4.8 41 31-73 38-78 (226)
350 PF13173 AAA_14: AAA domain 95.8 0.019 4.1E-07 39.9 4.5 40 31-73 2-41 (128)
351 PRK07933 thymidylate kinase; V 95.8 0.023 4.9E-07 43.2 5.2 36 33-70 2-37 (213)
352 TIGR02239 recomb_RAD51 DNA rep 95.8 0.037 7.9E-07 44.8 6.6 41 31-72 96-141 (316)
353 PRK08118 topology modulation p 95.7 0.013 2.9E-07 42.7 3.7 32 32-68 2-33 (167)
354 PRK06217 hypothetical protein; 95.7 0.012 2.7E-07 43.4 3.6 33 32-71 2-34 (183)
355 COG0378 HypB Ni2+-binding GTPa 95.7 0.14 3E-06 38.2 8.9 40 31-73 13-52 (202)
356 PRK05380 pyrG CTP synthetase; 95.7 0.38 8.2E-06 41.5 12.7 168 31-204 2-212 (533)
357 cd01890 LepA LepA subfamily. 95.7 0.037 8E-07 40.3 6.1 67 138-205 65-131 (179)
358 cd01888 eIF2_gamma eIF2-gamma 95.7 0.019 4.1E-07 43.2 4.5 66 140-205 83-149 (203)
359 COG0572 Udk Uridine kinase [Nu 95.7 0.018 3.8E-07 43.7 4.2 41 31-75 8-48 (218)
360 PRK05636 replicative DNA helic 95.7 0.025 5.3E-07 48.7 5.6 41 33-73 266-306 (505)
361 PLN02796 D-glycerate 3-kinase 95.6 0.025 5.4E-07 46.0 5.2 39 31-71 100-138 (347)
362 TIGR02655 circ_KaiC circadian 95.6 0.026 5.6E-07 48.4 5.6 42 31-73 21-62 (484)
363 PF13086 AAA_11: AAA domain; P 95.6 0.015 3.2E-07 44.2 3.7 34 34-68 19-60 (236)
364 PLN02348 phosphoribulokinase 95.6 0.033 7.1E-07 46.1 5.8 42 30-73 48-104 (395)
365 TIGR02236 recomb_radA DNA repa 95.6 0.02 4.4E-07 46.0 4.6 41 31-72 95-140 (310)
366 PF13401 AAA_22: AAA domain; P 95.6 0.017 3.7E-07 39.8 3.6 40 33-73 5-49 (131)
367 KOG3220 Similar to bacterial d 95.5 0.018 4E-07 42.9 3.8 48 123-176 91-138 (225)
368 PRK07004 replicative DNA helic 95.5 0.026 5.6E-07 48.0 5.2 41 34-74 215-255 (460)
369 PF13604 AAA_30: AAA domain; P 95.5 0.029 6.2E-07 42.1 4.8 36 32-69 19-54 (196)
370 TIGR02034 CysN sulfate adenyly 95.5 0.018 3.8E-07 48.2 4.1 68 138-205 78-145 (406)
371 cd01889 SelB_euk SelB subfamil 95.5 0.042 9.1E-07 40.8 5.7 67 138-205 66-132 (192)
372 TIGR00337 PyrG CTP synthase. C 95.5 0.38 8.1E-06 41.5 11.8 41 32-73 2-43 (525)
373 PF02572 CobA_CobO_BtuR: ATP:c 95.5 0.035 7.6E-07 40.7 5.0 29 40-69 11-39 (172)
374 PRK00131 aroK shikimate kinase 95.5 0.017 3.7E-07 41.9 3.5 34 31-71 4-37 (175)
375 PLN02759 Formate--tetrahydrofo 95.4 0.031 6.7E-07 48.2 5.3 52 30-84 68-122 (637)
376 PRK14734 coaE dephospho-CoA ki 95.4 0.028 6.1E-07 42.3 4.6 33 31-71 1-33 (200)
377 cd01876 YihA_EngB The YihA (En 95.4 0.16 3.5E-06 36.0 8.4 19 34-53 2-20 (170)
378 COG1072 CoaA Panthothenate kin 95.4 0.046 1E-06 42.8 5.6 41 31-73 82-124 (283)
379 PF09848 DUF2075: Uncharacteri 95.3 0.027 5.8E-07 46.2 4.6 39 32-71 1-41 (352)
380 PF08423 Rad51: Rad51; InterP 95.3 0.0072 1.6E-07 47.3 1.2 42 31-73 38-84 (256)
381 COG0480 FusA Translation elong 95.3 0.031 6.8E-07 49.7 5.1 67 139-206 75-141 (697)
382 PRK09302 circadian clock prote 95.3 0.04 8.7E-07 47.5 5.7 40 31-72 273-312 (509)
383 COG0237 CoaE Dephospho-CoA kin 95.3 0.023 5E-07 42.8 3.7 36 30-73 1-36 (201)
384 PRK00698 tmk thymidylate kinas 95.3 0.048 1E-06 40.8 5.5 35 31-67 3-37 (205)
385 PRK04301 radA DNA repair and r 95.2 0.032 6.9E-07 45.1 4.7 40 31-72 102-147 (317)
386 PRK01906 tetraacyldisaccharide 95.2 0.026 5.6E-07 46.0 4.1 42 31-73 56-98 (338)
387 COG0504 PyrG CTP synthase (UTP 95.2 0.36 7.8E-06 40.9 10.6 40 33-73 3-43 (533)
388 PF05729 NACHT: NACHT domain 95.2 0.026 5.5E-07 40.4 3.7 26 35-61 3-28 (166)
389 PRK13973 thymidylate kinase; P 95.2 0.058 1.3E-06 41.0 5.8 35 31-67 3-37 (213)
390 PLN02327 CTP synthase 95.2 0.48 1E-05 41.0 11.7 41 32-73 2-43 (557)
391 PF06414 Zeta_toxin: Zeta toxi 95.2 0.027 5.8E-07 42.3 3.8 40 31-73 14-53 (199)
392 PRK06851 hypothetical protein; 95.2 0.077 1.7E-06 43.7 6.7 47 31-79 214-260 (367)
393 PRK05506 bifunctional sulfate 95.2 0.04 8.7E-07 48.8 5.4 46 29-76 458-503 (632)
394 PRK05124 cysN sulfate adenylyl 95.2 0.033 7.2E-07 47.6 4.7 67 138-205 105-172 (474)
395 PF01121 CoaE: Dephospho-CoA k 95.2 0.011 2.5E-07 43.6 1.7 50 126-182 92-141 (180)
396 PRK05537 bifunctional sulfate 95.1 0.049 1.1E-06 47.6 5.7 44 29-73 390-433 (568)
397 cd01895 EngA2 EngA2 subfamily. 95.1 0.1 2.2E-06 37.4 6.6 67 138-205 48-125 (174)
398 COG3854 SpoIIIAA ncharacterize 95.1 0.39 8.4E-06 37.0 9.5 40 31-70 136-179 (308)
399 PTZ00386 formyl tetrahydrofola 95.0 0.032 6.9E-07 48.1 4.1 52 30-85 67-122 (625)
400 TIGR01360 aden_kin_iso1 adenyl 95.0 0.032 7E-07 41.1 3.8 25 31-56 3-27 (188)
401 COG2874 FlaH Predicted ATPases 95.0 0.11 2.4E-06 39.3 6.5 105 31-149 28-133 (235)
402 PF13238 AAA_18: AAA domain; P 95.0 0.026 5.7E-07 38.6 3.0 19 38-56 4-22 (129)
403 PRK06547 hypothetical protein; 95.0 0.041 8.8E-07 40.4 4.1 35 30-71 14-48 (172)
404 PRK00091 miaA tRNA delta(2)-is 95.0 0.049 1.1E-06 43.8 4.9 34 31-71 4-37 (307)
405 COG2109 BtuR ATP:corrinoid ade 94.9 0.23 5E-06 36.8 7.9 145 31-192 29-183 (198)
406 cd02021 GntK Gluconate kinase 94.9 0.025 5.4E-07 40.2 2.9 32 36-73 3-34 (150)
407 PRK09866 hypothetical protein; 94.9 0.11 2.3E-06 45.9 7.0 67 138-205 228-301 (741)
408 cd04124 RabL2 RabL2 subfamily. 94.9 0.11 2.3E-06 37.4 6.2 66 138-204 47-115 (161)
409 cd02024 NRK1 Nicotinamide ribo 94.9 0.022 4.7E-07 42.4 2.6 33 33-71 1-33 (187)
410 PRK06761 hypothetical protein; 94.9 0.048 1.1E-06 43.2 4.7 39 31-71 3-42 (282)
411 cd01879 FeoB Ferrous iron tran 94.9 0.11 2.4E-06 36.7 6.2 64 139-205 42-113 (158)
412 cd04161 Arl2l1_Arl13_like Arl2 94.9 0.12 2.5E-06 37.5 6.4 67 138-205 41-112 (167)
413 PRK04040 adenylate kinase; Pro 94.9 0.038 8.2E-07 41.2 3.8 26 31-57 2-27 (188)
414 cd01131 PilT Pilus retraction 94.8 0.9 2E-05 34.0 11.2 34 36-69 5-38 (198)
415 COG1855 ATPase (PilT family) [ 94.8 0.039 8.5E-07 46.2 4.0 35 31-67 263-297 (604)
416 PRK05057 aroK shikimate kinase 94.8 0.28 6E-06 35.9 8.2 33 32-71 5-37 (172)
417 PF13671 AAA_33: AAA domain; P 94.8 0.022 4.7E-07 40.0 2.2 31 35-71 2-32 (143)
418 PRK03731 aroL shikimate kinase 94.8 0.04 8.7E-07 40.1 3.7 34 31-71 2-35 (171)
419 PLN02200 adenylate kinase fami 94.7 0.054 1.2E-06 41.8 4.4 24 33-56 44-67 (234)
420 TIGR03172 probable selenium-de 94.7 0.054 1.2E-06 41.7 4.3 32 34-69 2-33 (232)
421 PF13191 AAA_16: AAA ATPase do 94.7 0.057 1.2E-06 39.5 4.4 40 31-72 24-63 (185)
422 PTZ00327 eukaryotic translatio 94.7 0.052 1.1E-06 46.1 4.6 67 139-205 116-183 (460)
423 PRK14490 putative bifunctional 94.7 0.12 2.6E-06 42.7 6.6 37 31-70 5-41 (369)
424 cd00154 Rab Rab family. Rab G 94.6 0.11 2.4E-06 36.4 5.7 67 138-205 47-117 (159)
425 KOG3062 RNA polymerase II elon 94.6 0.25 5.3E-06 37.8 7.5 35 33-69 3-39 (281)
426 PRK07413 hypothetical protein; 94.6 0.26 5.7E-06 40.7 8.3 31 39-70 26-62 (382)
427 PF03266 NTPase_1: NTPase; In 94.6 0.055 1.2E-06 39.5 4.0 28 37-65 4-31 (168)
428 TIGR00487 IF-2 translation ini 94.6 0.098 2.1E-06 45.9 6.1 64 141-205 136-199 (587)
429 cd02020 CMPK Cytidine monophos 94.6 0.037 8.1E-07 38.9 3.1 30 34-70 2-31 (147)
430 TIGR03594 GTPase_EngA ribosome 94.6 0.12 2.7E-06 43.4 6.6 67 138-205 218-295 (429)
431 PRK00093 GTP-binding protein D 94.5 0.13 2.7E-06 43.5 6.6 67 138-205 219-296 (435)
432 PRK15494 era GTPase Era; Provi 94.5 0.12 2.7E-06 42.2 6.3 66 138-205 98-172 (339)
433 PRK07261 topology modulation p 94.5 0.046 1E-06 40.0 3.4 23 33-56 2-24 (171)
434 PRK13947 shikimate kinase; Pro 94.5 0.046 1E-06 39.7 3.4 32 33-71 3-34 (171)
435 PRK05506 bifunctional sulfate 94.5 0.052 1.1E-06 48.1 4.3 67 138-205 102-169 (632)
436 PF01926 MMR_HSR1: 50S ribosom 94.5 0.19 4.1E-06 33.9 6.2 63 138-202 45-116 (116)
437 PRK07773 replicative DNA helic 94.4 0.081 1.8E-06 48.8 5.5 42 34-75 219-260 (886)
438 PRK00081 coaE dephospho-CoA ki 94.4 0.058 1.3E-06 40.3 3.8 34 31-72 2-35 (194)
439 PF07724 AAA_2: AAA domain (Cd 94.4 0.11 2.3E-06 38.1 5.1 42 32-74 3-45 (171)
440 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 94.3 0.71 1.5E-05 35.3 9.7 66 138-204 47-116 (222)
441 COG1217 TypA Predicted membran 94.3 0.094 2E-06 44.2 5.1 68 138-206 66-133 (603)
442 PRK06851 hypothetical protein; 94.3 0.16 3.6E-06 41.8 6.5 46 31-77 29-74 (367)
443 PRK12339 2-phosphoglycerate ki 94.3 0.059 1.3E-06 40.5 3.7 35 31-71 3-37 (197)
444 cd04151 Arl1 Arl1 subfamily. 94.2 0.17 3.8E-06 36.0 6.0 67 138-205 41-112 (158)
445 PRK14732 coaE dephospho-CoA ki 94.2 0.042 9.2E-07 41.2 2.8 32 34-73 2-33 (196)
446 COG1100 GTPase SAR1 and relate 94.2 0.16 3.5E-06 38.2 6.1 29 33-63 7-35 (219)
447 COG1936 Predicted nucleotide k 94.2 0.071 1.5E-06 38.9 3.7 20 33-53 2-21 (180)
448 COG0125 Tmk Thymidylate kinase 94.2 0.15 3.3E-06 38.6 5.7 36 30-67 2-37 (208)
449 TIGR03345 VI_ClpV1 type VI sec 94.2 0.15 3.3E-06 46.8 6.7 49 33-83 598-648 (852)
450 PF05707 Zot: Zonular occluden 94.2 0.11 2.4E-06 38.8 4.9 43 34-78 2-46 (193)
451 PLN02165 adenylate isopentenyl 94.1 0.063 1.4E-06 43.5 3.8 38 27-71 39-76 (334)
452 PRK05306 infB translation init 94.1 0.13 2.9E-06 46.5 6.1 67 138-205 335-401 (787)
453 COG1428 Deoxynucleoside kinase 94.1 0.067 1.4E-06 40.3 3.6 27 31-58 4-30 (216)
454 PF00931 NB-ARC: NB-ARC domain 94.1 0.073 1.6E-06 42.0 4.1 43 30-73 18-61 (287)
455 PF00004 AAA: ATPase family as 94.1 0.11 2.5E-06 35.5 4.6 32 37-72 3-34 (132)
456 PRK14730 coaE dephospho-CoA ki 94.1 0.075 1.6E-06 39.8 3.8 34 32-72 2-35 (195)
457 PF00910 RNA_helicase: RNA hel 94.0 0.078 1.7E-06 35.6 3.5 21 38-58 4-24 (107)
458 PRK13975 thymidylate kinase; P 94.0 0.081 1.8E-06 39.3 4.0 27 31-58 2-28 (196)
459 cd01864 Rab19 Rab19 subfamily. 94.0 0.13 2.9E-06 36.9 5.0 66 139-205 51-120 (165)
460 PHA02530 pseT polynucleotide k 94.0 0.066 1.4E-06 42.7 3.6 35 31-71 2-36 (300)
461 PRK04000 translation initiatio 93.9 0.1 2.2E-06 43.8 4.8 67 139-205 84-151 (411)
462 cd04160 Arfrp1 Arfrp1 subfamil 93.9 0.3 6.4E-06 35.0 6.7 67 138-205 48-119 (167)
463 PF01202 SKI: Shikimate kinase 93.9 0.044 9.5E-07 39.5 2.3 25 41-71 1-25 (158)
464 TIGR03680 eif2g_arch translati 93.9 0.097 2.1E-06 43.9 4.6 67 139-205 79-146 (406)
465 PRK14731 coaE dephospho-CoA ki 93.9 0.15 3.3E-06 38.5 5.3 35 29-71 3-37 (208)
466 COG0532 InfB Translation initi 93.9 0.1 2.3E-06 44.4 4.7 63 139-205 54-119 (509)
467 PRK03839 putative kinase; Prov 93.9 0.075 1.6E-06 39.1 3.5 30 34-70 3-32 (180)
468 smart00178 SAR Sar1p-like memb 93.9 0.19 4.2E-06 37.0 5.7 67 138-205 59-130 (184)
469 PRK12422 chromosomal replicati 93.9 0.098 2.1E-06 44.3 4.6 37 32-70 142-178 (445)
470 TIGR00362 DnaA chromosomal rep 93.8 0.1 2.2E-06 43.6 4.6 36 33-70 138-175 (405)
471 PTZ00451 dephospho-CoA kinase; 93.8 0.087 1.9E-06 40.9 3.8 36 31-73 1-36 (244)
472 PRK13948 shikimate kinase; Pro 93.8 0.084 1.8E-06 39.1 3.6 34 31-71 10-43 (182)
473 TIGR00376 DNA helicase, putati 93.8 0.12 2.5E-06 45.9 5.1 34 34-68 175-208 (637)
474 cd00878 Arf_Arl Arf (ADP-ribos 93.7 0.34 7.3E-06 34.4 6.7 66 139-205 42-112 (158)
475 COG0563 Adk Adenylate kinase a 93.7 0.092 2E-06 38.8 3.7 17 39-55 7-23 (178)
476 TIGR00483 EF-1_alpha translati 93.7 0.11 2.3E-06 43.8 4.5 68 138-205 83-153 (426)
477 cd00227 CPT Chloramphenicol (C 93.7 0.094 2E-06 38.4 3.7 26 31-57 2-27 (175)
478 PRK12338 hypothetical protein; 93.6 0.082 1.8E-06 42.6 3.6 37 31-73 4-40 (319)
479 PRK13946 shikimate kinase; Pro 93.6 0.07 1.5E-06 39.5 3.0 34 31-71 10-43 (184)
480 PRK14530 adenylate kinase; Pro 93.6 0.097 2.1E-06 39.7 3.8 25 31-56 3-27 (215)
481 COG2074 2-phosphoglycerate kin 93.6 0.086 1.9E-06 40.9 3.4 35 32-71 89-123 (299)
482 TIGR01313 therm_gnt_kin carboh 93.6 0.074 1.6E-06 38.3 3.0 30 37-72 3-32 (163)
483 PF02223 Thymidylate_kin: Thym 93.6 0.12 2.6E-06 38.2 4.2 31 40-72 4-34 (186)
484 COG0703 AroK Shikimate kinase 93.6 0.061 1.3E-06 39.3 2.5 27 39-71 9-35 (172)
485 PRK02496 adk adenylate kinase; 93.5 0.11 2.4E-06 38.3 3.8 24 33-57 3-26 (184)
486 PRK14531 adenylate kinase; Pro 93.5 0.12 2.5E-06 38.3 3.9 25 32-57 3-27 (183)
487 KOG1145 Mitochondrial translat 93.5 0.25 5.3E-06 42.5 6.1 62 138-205 199-265 (683)
488 KOG0468 U5 snRNP-specific prot 93.4 0.13 2.7E-06 45.2 4.5 67 138-205 195-261 (971)
489 PLN02422 dephospho-CoA kinase 93.4 0.16 3.4E-06 39.2 4.6 35 31-73 1-35 (232)
490 cd04145 M_R_Ras_like M-Ras/R-R 93.4 0.47 1E-05 33.7 7.0 66 139-205 49-119 (164)
491 cd04147 Ras_dva Ras-dva subfam 93.4 0.36 7.8E-06 36.0 6.6 65 140-205 47-116 (198)
492 PF10662 PduV-EutP: Ethanolami 93.4 0.093 2E-06 37.2 3.1 65 138-204 62-130 (143)
493 PRK14527 adenylate kinase; Pro 93.3 0.13 2.7E-06 38.3 4.0 27 31-58 6-32 (191)
494 PF07728 AAA_5: AAA domain (dy 93.3 0.23 5E-06 34.7 5.1 32 38-73 5-36 (139)
495 KOG0448 Mitofusin 1 GTPase, in 93.3 0.25 5.4E-06 43.5 6.1 64 141-205 207-273 (749)
496 PRK07429 phosphoribulokinase; 93.3 0.17 3.6E-06 41.1 4.9 36 31-70 8-43 (327)
497 cd00046 DEXDc DEAD-like helica 93.2 0.21 4.4E-06 34.1 4.8 32 36-67 4-36 (144)
498 COG1110 Reverse gyrase [DNA re 93.2 0.15 3.1E-06 46.9 4.7 35 31-67 97-131 (1187)
499 smart00177 ARF ARF-like small 93.2 0.45 9.7E-06 34.7 6.7 67 138-205 55-126 (175)
500 PRK00149 dnaA chromosomal repl 93.2 0.15 3.3E-06 43.3 4.7 35 36-71 152-188 (450)
No 1
>PRK11670 antiporter inner membrane protein; Provisional
Probab=100.00 E-value=6.5e-32 Score=219.55 Aligned_cols=193 Identities=48% Similarity=0.790 Sum_probs=143.0
Q ss_pred EEEeecCccccccccccccccCCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccccCCc
Q 028600 7 IFTRLGGVRYYAAFGSKDLKIDGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKP 86 (207)
Q Consensus 7 ~~~~~~~~r~~~~~~~~~~~~~~~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~~~~ 86 (207)
+.+.++.+|.+..+. ..++..++|+|+|+|||+||||+++|||.+||+ .|+||++||+|+++++++.+||.....
T Consensus 87 ~~~~~~~~~~~~~~~----~~~~~~~vIaV~S~KGGVGKTT~avNLA~aLA~-~G~rVlLID~D~qgps~~~~lg~~~~~ 161 (369)
T PRK11670 87 LSHNIATLKRVNNQP----GVNGVKNIIAVSSGKGGVGKSSTAVNLALALAA-EGAKVGILDADIYGPSIPTMLGAEDQR 161 (369)
T ss_pred Eeeehhhhccccccc----cCCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHH-CCCcEEEEeCCCCCCCcchhcCCcccC
Confidence 334455566554433 256678999999999999999999999999999 999999999999999998888864322
Q ss_pred c-ccccccceecccccceeecccccCCCCCcccccchhhHHHHHHHHH-hcccCCCCEEEEcCCCCCCcchhhhhhhhcC
Q 028600 87 E-VTKDMKMVPIENYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSR-EVDWGNLDILVIDMPPGTGDAQLTTTQTLQL 164 (207)
Q Consensus 87 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~l~~~~~D~IiiD~~~~~~~~~~~~~~~~~~ 164 (207)
. ..+...+.+....++.....+.+........++++.....+.+++. .+. +.||||||||||++++..+++..+..+
T Consensus 162 ~~~~~~~~i~p~~~~g~~~~~~~~l~~~~~~~i~~g~~~~~~l~~~l~~~~~-~~yDyvIID~PPg~gd~~l~~~~l~aa 240 (369)
T PRK11670 162 PTSPDGTHMAPIMAHGLATNSIGYLVTDDNAMVWRGPMASKALMQMLQETLW-PDLDYLVLDMPPGTGDIQLTLAQNIPV 240 (369)
T ss_pred CcccCCceeeeeeccCcccccHHHhcCcCcceeecCcchHHHHHHHHHHHhh-ccCCEEEEeCCCCCchHHHHHhhhccC
Confidence 1 1112223333333333333333333333344455555667777774 455 889999999999998765656666578
Q ss_pred ceEEEeeCCchhhHHHHHHHHHHhhhCCCCeeEEEEccccC
Q 028600 165 SGALIVSTPQDVALIDARKGITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 165 d~vi~v~~~~~~~~~~~~~~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
|.+|+|+.+...++.++.+.++.+.+.+.+++|+|+|+++.
T Consensus 241 d~viiV~tp~~~s~~da~~~i~~~~~~~~~ilGiV~Nm~~~ 281 (369)
T PRK11670 241 TGAVVVTTPQDIALIDAKKGIVMFEKVEVPVLGIVENMSMH 281 (369)
T ss_pred CeEEEEecCchhHHHHHHHHHHHHhccCCCeEEEEEcCCcc
Confidence 99999999999999999999999999999999999999753
No 2
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=99.98 E-value=3.6e-32 Score=205.95 Aligned_cols=189 Identities=20% Similarity=0.257 Sum_probs=145.1
Q ss_pred ceEEEEeecCccccccccccccccCCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCcccccccc
Q 028600 4 SFRIFTRLGGVRYYAAFGSKDLKIDGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKID 83 (207)
Q Consensus 4 ~~~~~~~~~~~r~~~~~~~~~~~~~~~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~ 83 (207)
.+++.++++.+|.++.......+..+.+|+|+|+|+|||+||||+++|||+++|+..|+||++||+|++.++++..++.+
T Consensus 8 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vi~v~s~kgG~GkSt~a~nLA~~la~~~g~~VLlvD~D~~~~~~~~~~~~~ 87 (207)
T TIGR03018 8 RSRIAEEFRKIKRPLLANAFSANRKKNNNLIMVTSSLPGEGKSFTAINLAISLAQEYDKTVLLIDADLRRPSLHRTLGLE 87 (207)
T ss_pred CCHHHHHHHHHHHHHHHhccccccCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHhcCCeEEEEECCCCChhhhheeCCC
Confidence 34566788899999886553323345589999999999999999999999999963699999999999999998888877
Q ss_pred CCcccccc---------ccceecccccceeecccccCCCCCcccccchhhHHHHHHHHHhcccCCC--CEEEEcCCCCCC
Q 028600 84 QKPEVTKD---------MKMVPIENYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNL--DILVIDMPPGTG 152 (207)
Q Consensus 84 ~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~--D~IiiD~~~~~~ 152 (207)
...++.+. ..+......+++++|.|........ ......+.++++.++ ++| ||||||+||..+
T Consensus 88 ~~~~l~~~l~~~~~~l~~~i~~~~~~~l~vl~~g~~~~~~~~-----~~~~~~l~~~l~~l~-~~y~~D~IiiD~pp~~~ 161 (207)
T TIGR03018 88 AEPGLSDCLLDPVLDLADVLVPTNIGRLSLLPAGRRHPNPTE-----LLASQRMRSLLHELA-RRYPDRIIIIDTPPLLV 161 (207)
T ss_pred CCCCHHHHHcCCCCCHHHHhccCCCCCEEEEeCCCCCCCHHH-----HhCcHHHHHHHHHHH-hhCCCCEEEEECCCCcc
Confidence 65544331 1112223467888887754432111 123467889999998 888 999999999876
Q ss_pred cchhhhhhhhcCceEEEeeCCchhhHHHHHHHHHHhhhCCCCeeEEEEc
Q 028600 153 DAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPVCSFLAQ 201 (207)
Q Consensus 153 ~~~~~~~~~~~~d~vi~v~~~~~~~~~~~~~~l~~l~~~~~~~~g~v~N 201 (207)
.... ...+..+|.+|+|++++.++...+.+.++.++ +.+++|+|+|
T Consensus 162 ~~~~-~~l~~~aD~viiV~~~~~~~~~~~~~~~~~l~--~~~~~G~v~N 207 (207)
T TIGR03018 162 FSEA-RALARLVGQIVLVVEEGRTTQEAVKEALSALE--SCKVLGVVLN 207 (207)
T ss_pred hhHH-HHHHHhCCEEEEEEECCCCCHHHHHHHHHHhc--CCCeEEEEeC
Confidence 3222 33344799999999999999999999999999 6789999998
No 3
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=99.98 E-value=8.2e-32 Score=203.67 Aligned_cols=184 Identities=18% Similarity=0.236 Sum_probs=142.8
Q ss_pred EeecCccccccccccccccCCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccccC-Ccc
Q 028600 9 TRLGGVRYYAAFGSKDLKIDGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQ-KPE 87 (207)
Q Consensus 9 ~~~~~~r~~~~~~~~~~~~~~~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~~-~~~ 87 (207)
|.|+.||+++.+.... +|+|+|+|.|||+||||++.+||.++|+ .|+||++||+|++.+.+...++... ..+
T Consensus 1 ~~~~~l~~~l~~~~~~------~kvI~v~s~kgG~GKTt~a~~LA~~la~-~G~rVllID~D~~~~~l~~~~~~~~~~~~ 73 (204)
T TIGR01007 1 EYYNAIRTNIQFSGAE------IKVLLITSVKPGEGKSTTSANIAVAFAQ-AGYKTLLIDGDMRNSVMSGTFKSQNKITG 73 (204)
T ss_pred ChHHHHHHHHhhhcCC------CcEEEEecCCCCCCHHHHHHHHHHHHHh-CCCeEEEEeCCCCChhHHHHhCCCCCCCC
Confidence 4578899999987644 8999999999999999999999999999 9999999999999998887776554 333
Q ss_pred cccc--------ccceecccccceeecccccCCCCCcccccchhhHHHHHHHHHhcccCCCCEEEEcCCCCCCcchhhhh
Q 028600 88 VTKD--------MKMVPIENYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTT 159 (207)
Q Consensus 88 ~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~D~IiiD~~~~~~~~~~~~~ 159 (207)
+.+. ..+......++++++.+...+.... ......+.++++.++ +.|||||||+||....... ..
T Consensus 74 l~~~l~~~~~l~~~i~~~~~~~l~~l~~g~~~~~~~~-----~l~~~~l~~~l~~l~-~~yD~ViiD~pp~~~~~~~-~~ 146 (204)
T TIGR01007 74 LTNFLSGTTDLSDAICDTNIENLFVITSGPVPPNPTE-----LLQSSNFKTLIETLR-KYFDYIIIDTPPIGTVTDA-AI 146 (204)
T ss_pred HHHHhcCCCCHHHhcccCCCCCEEEEeCCCCCCCHHH-----HhCcHHHHHHHHHHH-hcCCEEEEeCCCccccchH-HH
Confidence 3221 1122223367888887764332211 123466888999998 9999999999984322122 22
Q ss_pred hhhcCceEEEeeCCchhhHHHHHHHHHHhhhCCCCeeEEEEccccCC
Q 028600 160 QTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPVCSFLAQIISSM 206 (207)
Q Consensus 160 ~~~~~d~vi~v~~~~~~~~~~~~~~l~~l~~~~~~~~g~v~N~~~~~ 206 (207)
....+|.+++|++++..+...+.+.++.+++.+.+++|+|+|+++..
T Consensus 147 ~~~~~D~vilV~~~~~~~~~~~~~~~~~l~~~~~~~~gvVlN~~~~~ 193 (204)
T TIGR01007 147 IARACDASILVTDAGEIKKRDVQKAKEQLEQTGSNFLGVVLNKVDIS 193 (204)
T ss_pred HHHhCCeEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEEEeCcccc
Confidence 33368999999999999999999999999999999999999998854
No 4
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=99.97 E-value=5.1e-32 Score=213.55 Aligned_cols=186 Identities=20% Similarity=0.240 Sum_probs=148.6
Q ss_pred eEEEEeecCccccccccccccccCCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccccC
Q 028600 5 FRIFTRLGGVRYYAAFGSKDLKIDGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQ 84 (207)
Q Consensus 5 ~~~~~~~~~~r~~~~~~~~~~~~~~~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~~ 84 (207)
+++.|+++.+|+++.+... .+.+|+|+|+|++||+||||++.|||.++|+ .|+||++||+|++.+.++..++.+.
T Consensus 81 ~~~~e~~~~l~~~l~~~~~----~~~~~vi~vts~~~g~Gktt~a~nLA~~la~-~g~~VllID~D~~~~~~~~~~~~~~ 155 (274)
T TIGR03029 81 SPQVEALRALRSQLMLRWF----SEGRKALAVVSAKSGEGCSYIAANLAIVFSQ-LGEKTLLIDANLRDPVQHRNFKLSE 155 (274)
T ss_pred CHHHHHHHHHHHHhhhhcc----CCCCeEEEEECCCCCCCHHHHHHHHHHHHHh-cCCeEEEEeCCCCCccHHHhcCCCC
Confidence 3455888999999988764 3348999999999999999999999999999 9999999999999999888888776
Q ss_pred Ccccccc-------cccee-cccccceeecccccCCCCCcccccchhhHHHHHHHHHhcccCCCCEEEEcCCCCCCcchh
Q 028600 85 KPEVTKD-------MKMVP-IENYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQL 156 (207)
Q Consensus 85 ~~~~~~~-------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~D~IiiD~~~~~~~~~~ 156 (207)
..++.+. ..+.. ....+++++|.|......... .....+.+++++++ +.|||||||+||.......
T Consensus 156 ~~gl~~~l~~~~~~~~i~~~~~~~~l~~lp~g~~~~~~~~~-----~~~~~~~~~l~~l~-~~yD~ViiD~pp~~~~~d~ 229 (274)
T TIGR03029 156 QRGLSDILAGRSDLEVITHIPALENLSVLPAGAIPPNPQEL-----LARPAFTDLLNKVM-GDYDVVIVDTPSAEHSSDA 229 (274)
T ss_pred CCCHHHHhCCCCCHHHeeecCCCCCEEEEeCcCCCCCHHHH-----hCcHHHHHHHHHHH-hcCCEEEEeCCCcccccHH
Confidence 6555432 11111 224688999988754322221 22457889999998 9999999999997542222
Q ss_pred hhhhhhcCceEEEeeCCchhhHHHHHHHHHHhhhCCCCeeEEEEcc
Q 028600 157 TTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPVCSFLAQI 202 (207)
Q Consensus 157 ~~~~~~~~d~vi~v~~~~~~~~~~~~~~l~~l~~~~~~~~g~v~N~ 202 (207)
......+|.+|+|+.++.++...+.+.++.+++.+.+++|+|+|+
T Consensus 230 -~~~~~~~d~vilV~~~~~t~~~~~~~~~~~l~~~~~~~~G~VlN~ 274 (274)
T TIGR03029 230 -QIVATRARGTLIVSRVNETRLHELTSLKEHLSGVGVRVVGAVLNQ 274 (274)
T ss_pred -HHHHHhCCeEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEEeCC
Confidence 333447999999999999999999999999999999999999996
No 5
>KOG3022 consensus Predicted ATPase, nucleotide-binding [Cell cycle control, cell division, chromosome partitioning]
Probab=99.97 E-value=7.5e-31 Score=198.58 Aligned_cols=185 Identities=47% Similarity=0.757 Sum_probs=162.4
Q ss_pred cccccccccCCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccccCCcccccccccee-c
Q 028600 19 AFGSKDLKIDGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVP-I 97 (207)
Q Consensus 19 ~~~~~~~~~~~~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~~~~~~~~~~~~~~-~ 97 (207)
.+..++....+-..+|+|+|+|||+||||+++|||.+||+ .|++|.++|+|..+|++..++|.+.+.-......+.| .
T Consensus 35 ~~~~~~~~l~~vk~iI~VlSGKGGVGKSTvt~nla~~La~-~g~~vglLD~Dl~GPSiP~m~g~e~~~~~~~~~g~~Pv~ 113 (300)
T KOG3022|consen 35 DIPAKQENLSGVKHIILVLSGKGGVGKSTVTVNLALALAS-EGKKVGLLDADLCGPSIPRMMGLEGEVVHQSDNGWIPVV 113 (300)
T ss_pred CcccccccccccceEEEEEeCCCCCchhHHHHHHHHHHhc-CCCcEEEEeecccCCCchhhcCCCCceeeecCCCceeee
Confidence 3334444566678899999999999999999999999999 9999999999999999999999988775556667777 7
Q ss_pred ccccceeecccccCCC-CCcccccchhhHHHHHHHHHhcccCCCCEEEEcCCCCCCcchhhhhhh-hcCceEEEeeCCch
Q 028600 98 ENYGVKCMSMGFLVPS-SSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQT-LQLSGALIVSTPQD 175 (207)
Q Consensus 98 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~l~~~~~D~IiiD~~~~~~~~~~~~~~~-~~~d~vi~v~~~~~ 175 (207)
...++.++..|++..+ +....|+++.....+++++....+.+.||+||||||+.++..+++..- ...|+.|+|++|..
T Consensus 114 ~~~~l~~mS~gfLl~~~~~~vIwRGpkk~~~I~qflk~vdwg~lDyLviDtPPGtsDehls~~~~~~~~~gAviVTTPQ~ 193 (300)
T KOG3022|consen 114 VNKNLKLMSMGFLLKPRDDSVIWRGPKKNSMIKQFLKDVDWGELDYLVIDTPPGTSDEHLSLVQFLRESDGAVIVTTPQE 193 (300)
T ss_pred ecCCeEEEEeeeecCCCCccceeechHHHHHHHHHHhcCCCCCcCEEEEeCCCCCChhhhheeecccccCceEEEeCchh
Confidence 8889999999999887 668889999999999999999998899999999999998776644332 22378999999999
Q ss_pred hhHHHHHHHHHHhhhCCCCeeEEEEcccc
Q 028600 176 VALIDARKGITMFSKVQVPVCSFLAQIIS 204 (207)
Q Consensus 176 ~~~~~~~~~l~~l~~~~~~~~g~v~N~~~ 204 (207)
.++.++.+-++.+++.+++++|+|-|+..
T Consensus 194 vAl~Dv~K~i~fc~K~~I~ilGvVENMs~ 222 (300)
T KOG3022|consen 194 VALQDVRKEIDFCRKAGIPILGVVENMSG 222 (300)
T ss_pred hhhHHHHhhhhhhhhcCCceEEEEecccc
Confidence 99999999999999999999999999865
No 6
>COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=99.97 E-value=1e-29 Score=198.18 Aligned_cols=189 Identities=41% Similarity=0.589 Sum_probs=148.7
Q ss_pred EEEeecCccccccccccccccCCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccccCCc
Q 028600 7 IFTRLGGVRYYAAFGSKDLKIDGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKP 86 (207)
Q Consensus 7 ~~~~~~~~r~~~~~~~~~~~~~~~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~~~~ 86 (207)
..++++.++.++.+..... .+..++|+|+|+|||+||||+++|||.++|+ .|+||++||+|.++|+++.+|+.+...
T Consensus 35 ~~~~~~~~~~~~~~~~~~~--~~~~~~I~V~S~kgGvGKStva~nLA~alA~-~G~rVlliDaD~~gps~~~~l~~~~~~ 111 (265)
T COG0489 35 ASEALRALRTNLKFAKVLR--KGVKNVIAVTSGKGGVGKSTVAVNLAAALAQ-LGKRVLLLDADLRGPSIPRMLGLENLP 111 (265)
T ss_pred hhhhhhhhhcchhhhhccc--cccceEEEEEeCCCCCcHHHHHHHHHHHHHh-cCCcEEEEeCcCCCCchHHHhCCCCCC
Confidence 3455666666545544331 2358999999999999999999999999999 999999999999999999999987543
Q ss_pred ccccc--cc-ceecc----cccceeecccccCCCCCcccccchhhHHHHHHHHHhcccCCCCEEEEcCCCCCCcchhhhh
Q 028600 87 EVTKD--MK-MVPIE----NYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTT 159 (207)
Q Consensus 87 ~~~~~--~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~D~IiiD~~~~~~~~~~~~~ 159 (207)
++.+. .. +.+.. ...+..++.+. .+..+++.+....+.+++..+++..|||||||+||+.++....+.
T Consensus 112 g~~~~~~g~~~~~~~~~~~~~~lsi~~~~~-----~p~~~r~~l~s~~~~qll~~~~~~~~D~vIID~PP~~g~~d~~i~ 186 (265)
T COG0489 112 GLTELLAGEALEPVIQHDGIKVLSILPLGP-----VPVIPRGLLGSKAMLQLLEDVLWGEYDYVIIDTPPGTGDADATVL 186 (265)
T ss_pred CcccccCCCccccceecCccceEEEEecCC-----CCCCChHhhhhHHHHHHHHHHhccCCCEEEEeCCCCchHHHHHHH
Confidence 33322 11 22222 33444444443 555667788899999999999944499999999999887777554
Q ss_pred hhhcCceEEEeeCCchhhHHHHHHHHHHhhhCCCCeeEEEEcccc
Q 028600 160 QTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPVCSFLAQIIS 204 (207)
Q Consensus 160 ~~~~~d~vi~v~~~~~~~~~~~~~~l~~l~~~~~~~~g~v~N~~~ 204 (207)
. ...|.+|+|+++.......+.+.++.+++.+.+++|+|.|+..
T Consensus 187 ~-~~~~g~viVt~p~~~~~~~v~ka~~~~~~~~~~vlGvv~Nm~~ 230 (265)
T COG0489 187 Q-RIPDGVVIVTTPGKTALEDVKKAIDMLEKAGIPVLGVVENMSY 230 (265)
T ss_pred h-ccCCeEEEEeCCccchHHHHHHHHHHHHhcCCceEEEEecCcc
Confidence 4 3678999999999999999999999999999999999999765
No 7
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=99.97 E-value=2.5e-29 Score=195.71 Aligned_cols=164 Identities=27% Similarity=0.378 Sum_probs=128.2
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccccCCc-cccc-------cccceecccccce
Q 028600 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKP-EVTK-------DMKMVPIENYGVK 103 (207)
Q Consensus 32 k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~~~~-~~~~-------~~~~~~~~~~~~~ 103 (207)
|+|+|+|.|||+||||+|+|||.++|+ .|++|++||+|+++++++.+++.+... ++.+ ..........+++
T Consensus 1 ~ii~v~~~KGGvGKTt~a~~LA~~la~-~g~~VlliD~D~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 79 (251)
T TIGR01969 1 RIITIASGKGGTGKTTITANLGVALAK-LGKKVLALDADITMANLELILGMEDKPVTLHDVLAGEADIKDAIYEGPFGVK 79 (251)
T ss_pred CEEEEEcCCCCCcHHHHHHHHHHHHHH-CCCeEEEEeCCCCCccceeEeCCCCCCCCHHHHhcCCCCHHHheEeCCCCEE
Confidence 589999999999999999999999999 999999999999988999999876431 2111 1111122234677
Q ss_pred eecccccCCCCCcccccchhhHHHHHHHHHhcccCCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCchhhHHHHHH
Q 028600 104 CMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARK 183 (207)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~~~~~~~~~ 183 (207)
++|.+...... .......+.+.+..++ ++|||||||+||+++. .....+..+|.+++|++++..++..+.+
T Consensus 80 ~lp~~~~~~~~------~~~~~~~l~~~l~~l~-~~yD~VIiD~p~~~~~--~~~~~l~~ad~vliv~~~~~~s~~~~~~ 150 (251)
T TIGR01969 80 VIPAGVSLEGL------RKADPDKLEDVLKEII-DDTDFLLIDAPAGLER--DAVTALAAADELLLVVNPEISSITDALK 150 (251)
T ss_pred EEeCCCCHHHH------hhcCHHHHHHHHHHHH-hhCCEEEEeCCCccCH--HHHHHHHhCCeEEEEECCCCchHHHHHH
Confidence 77766422111 1123557888888888 8999999999999884 4455666899999999999999999988
Q ss_pred HHHHhhhCCCCeeEEEEccccC
Q 028600 184 GITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 184 ~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
.++.+++.+.+.+++|+|+++.
T Consensus 151 ~~~~~~~~~~~~~~vv~N~~~~ 172 (251)
T TIGR01969 151 TKIVAEKLGTAILGVVLNRVTR 172 (251)
T ss_pred HHHHHHhcCCceEEEEEECCCc
Confidence 8888888888889999999874
No 8
>CHL00175 minD septum-site determining protein; Validated
Probab=99.96 E-value=8.9e-29 Score=195.77 Aligned_cols=168 Identities=19% Similarity=0.302 Sum_probs=131.6
Q ss_pred cCCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccccCCc--ccccc--------cccee
Q 028600 27 IDGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKP--EVTKD--------MKMVP 96 (207)
Q Consensus 27 ~~~~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~~~~--~~~~~--------~~~~~ 96 (207)
.++++++|+|+|+|||+||||+|+|||.+|++ .|+||++||+|++.+++..+++.+... .+.+. .....
T Consensus 11 ~~~~~~vi~v~s~KGGvGKTt~a~nLA~~La~-~g~~vlliD~D~~~~~l~~~lg~~~~~~~~~~d~l~~~~~l~~~~~~ 89 (281)
T CHL00175 11 SATMSRIIVITSGKGGVGKTTTTANLGMSIAR-LGYRVALIDADIGLRNLDLLLGLENRVLYTAMDVLEGECRLDQALIR 89 (281)
T ss_pred cCCCceEEEEEcCCCCCcHHHHHHHHHHHHHh-CCCeEEEEeCCCCCCChhhhcCCCCCCCCCHHHHHcCCCChhhheee
Confidence 45678999999999999999999999999999 999999999999988899888876421 11110 11111
Q ss_pred -cccccceeecccccCCCCCcccccchhhHHHHHHHHHhcccC-CCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCc
Q 028600 97 -IENYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWG-NLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQ 174 (207)
Q Consensus 97 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~-~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~ 174 (207)
....++++++.+...... ......+.++++.++ . .||||||||||+++. .....+..+|.+++|++++
T Consensus 90 ~~~~~~l~~l~~~~~~~~~-------~~~~~~l~~~l~~l~-~~~yD~VIiDtpp~~~~--~~~~~l~~aD~viiV~~p~ 159 (281)
T CHL00175 90 DKRWKNLSLLAISKNRQRY-------NVTRKNMNMLVDSLK-NRGYDYILIDCPAGIDV--GFINAIAPAQEAIVVTTPE 159 (281)
T ss_pred cCCCCCeEEEeCCCchhhc-------cCCHHHHHHHHHHHH-hCCCCEEEEeCCCCCCH--HHHHHHHhcCeeEEEcCCC
Confidence 234577888776432111 122456888888887 6 899999999998873 3355566899999999999
Q ss_pred hhhHHHHHHHHHHhhhCCCCeeEEEEccccC
Q 028600 175 DVALIDARKGITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 175 ~~~~~~~~~~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
..++..+.++++.+++.+....++|+|+++.
T Consensus 160 ~~si~~~~~~~~~l~~~~~~~~~lvvN~~~~ 190 (281)
T CHL00175 160 ITAIRDADRVAGLLEANGIYNVKLLVNRVRP 190 (281)
T ss_pred hHHHHHHHHHHHHHHHcCCCceEEEEeccCh
Confidence 9999999999999999887778999999864
No 9
>PRK11519 tyrosine kinase; Provisional
Probab=99.96 E-value=1.2e-29 Score=222.45 Aligned_cols=187 Identities=16% Similarity=0.230 Sum_probs=154.9
Q ss_pred EEEeecCccccccccccccccCCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccccCCc
Q 028600 7 IFTRLGGVRYYAAFGSKDLKIDGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKP 86 (207)
Q Consensus 7 ~~~~~~~~r~~~~~~~~~~~~~~~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~~~~ 86 (207)
+.|+++.+|+++.+..... ..|+|+|+|++||+||||++.|||.++|+ .|+||++||+|++.|+++..++.....
T Consensus 506 ~~Ea~r~lrt~l~~~~~~~----~~kvi~vts~~~geGKTt~a~nLA~~la~-~g~rvLlID~Dlr~~~~~~~~~~~~~~ 580 (719)
T PRK11519 506 AIEAIRSLRTSLHFAMMQA----QNNVLMMTGVSPSIGKTFVCANLAAVISQ-TNKRVLLIDCDMRKGYTHELLGTNNVN 580 (719)
T ss_pred HHHHHHHHHHHhhhhccCC----CceEEEEECCCCCCCHHHHHHHHHHHHHh-CCCcEEEEeCCCCCCcHHHHhCCCCCC
Confidence 4478899999999976432 37999999999999999999999999999 999999999999999999999887766
Q ss_pred ccccc--------ccceecccccceeecccccCCCCCcccccchhhHHHHHHHHHhcccCCCCEEEEcCCCCCCcchhhh
Q 028600 87 EVTKD--------MKMVPIENYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTT 158 (207)
Q Consensus 87 ~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~D~IiiD~~~~~~~~~~~~ 158 (207)
++.+. ..+.+....+++++|.|..++.+.+. ....++.++++.++ ++||+|||||||.+..... .
T Consensus 581 gl~~~l~~~~~l~~~i~~~~~~~l~~lp~g~~~~~~~el-----l~s~~~~~ll~~l~-~~yD~ViiDtpP~~~v~Da-~ 653 (719)
T PRK11519 581 GLSDILIGQGDITTAAKPTSIANFDLIPRGQVPPNPSEL-----LMSERFAELVNWAS-KNYDLVLIDTPPILAVTDA-A 653 (719)
T ss_pred CHHHHhCCCCCHHHhecccCcCCEEEEeCCCCCCCHHHH-----hhHHHHHHHHHHHH-hcCCEEEEeCCCcccchHH-H
Confidence 66542 22334455799999998755443332 34678999999999 9999999999997653333 2
Q ss_pred hhhhcCceEEEeeCCchhhHHHHHHHHHHhhhCCCCeeEEEEccccC
Q 028600 159 TQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 159 ~~~~~~d~vi~v~~~~~~~~~~~~~~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
....++|.+++|+.++.++...+...++.+++.+.+++|+|+|+++.
T Consensus 654 ~l~~~~d~~l~Vvr~~~t~~~~~~~~~~~l~~~~~~~~G~VlN~v~~ 700 (719)
T PRK11519 654 IVGRHVGTTLMVARYAVNTLKEVETSLSRFEQNGIPVKGVILNSIFR 700 (719)
T ss_pred HHHHHCCeEEEEEeCCCCCHHHHHHHHHHHHhCCCCeEEEEEeCCcc
Confidence 33448999999999999999999999999999999999999999853
No 10
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=99.96 E-value=2.2e-29 Score=221.14 Aligned_cols=187 Identities=13% Similarity=0.212 Sum_probs=152.8
Q ss_pred EEEeecCccccccccccccccCCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccccCCc
Q 028600 7 IFTRLGGVRYYAAFGSKDLKIDGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKP 86 (207)
Q Consensus 7 ~~~~~~~~r~~~~~~~~~~~~~~~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~~~~ 86 (207)
+.|+++.+|+++.+.... ...|+|+|+|+++|+||||++.|||.++|. .|+||++||+|++.+.++..|+.....
T Consensus 511 ~~Ea~r~lrt~l~~~~~~----~~~kvI~vtS~~~g~GKTtva~nLA~~la~-~G~rVLlID~D~r~~~l~~~~~~~~~~ 585 (726)
T PRK09841 511 AVEAVRALRTSLHFAMME----TENNILMITGATPDSGKTFVSSTLAAVIAQ-SDQKVLFIDADLRRGYSHNLFTVSNEH 585 (726)
T ss_pred HHHHHHHHHHHhhhhccC----CCCeEEEEecCCCCCCHHHHHHHHHHHHHh-CCCeEEEEeCCCCCCcHHHHcCCCCCC
Confidence 347888999999987643 238999999999999999999999999999 999999999999999998888877665
Q ss_pred ccccc--------ccceecccccceeecccccCCCCCcccccchhhHHHHHHHHHhcccCCCCEEEEcCCCCCCcchhhh
Q 028600 87 EVTKD--------MKMVPIENYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTT 158 (207)
Q Consensus 87 ~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~D~IiiD~~~~~~~~~~~~ 158 (207)
++.+. ..+.+....+++++++|..++.+.+. ....++.++++.++ ..||||||||||.+.......
T Consensus 586 gl~~~l~~~~~~~~~i~~~~~~~l~vl~~g~~~~~p~el-----l~~~~~~~ll~~l~-~~yD~IIIDtPP~~~~~Da~~ 659 (726)
T PRK09841 586 GLSEYLAGKDELNKVIQHFGKGGFDVITRGQVPPNPSEL-----LMRDRMRQLLEWAN-DHYDLVIVDTPPMLAVSDAAV 659 (726)
T ss_pred CHHHHhCCCCCHHHheeccCCCCEEEEeCCCCCCCHHHH-----hCcHHHHHHHHHHH-hcCCEEEEeCCCccccchHHH
Confidence 55442 22333445689999998755433332 23568899999999 999999999999776433323
Q ss_pred hhhhcCceEEEeeCCchhhHHHHHHHHHHhhhCCCCeeEEEEccccC
Q 028600 159 TQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 159 ~~~~~~d~vi~v~~~~~~~~~~~~~~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
. ...+|.+++|+.++.++...+.+.++.+++.+.+++|+|+|+++.
T Consensus 660 l-a~~ad~~llVvr~~~t~~~~~~~~~~~l~~~~~~~~G~VlN~~~~ 705 (726)
T PRK09841 660 V-GRSVGTSLLVARFGLNTAKEVSLSMQRLEQAGVNIKGAILNGVIK 705 (726)
T ss_pred H-HHhCCeEEEEEeCCCCCHHHHHHHHHHHHhCCCceEEEEEeCccc
Confidence 2 347999999999999999999999999999999999999999863
No 11
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=99.96 E-value=2.9e-28 Score=185.27 Aligned_cols=168 Identities=23% Similarity=0.226 Sum_probs=117.7
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccccCCccccc------------cccceeccc
Q 028600 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTK------------DMKMVPIEN 99 (207)
Q Consensus 32 k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~~~~~~~~------------~~~~~~~~~ 99 (207)
|+|+|++ |||+||||+++|||++||+ .|+||++||+|++.+....+++.....++.+ .........
T Consensus 1 ~~iav~g-KGGvGKTt~~~nLA~~la~-~G~rvLliD~D~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (212)
T cd02117 1 RQIAIYG-KGGIGKSTTSQNLSAALAE-MGKKVLQVGCDPKADSTRLLLGGKAPTTILELAAEDGHVEDLELEDVIFEGF 78 (212)
T ss_pred CEEEEEC-CCcCcHHHHHHHHHHHHHH-CCCcEEEEeCCCCCCccccccCCCCCCCHHHHHhhhCCcCCcChhHeeEeCC
Confidence 5799995 9999999999999999999 9999999999999876665555433322211 122333445
Q ss_pred ccceeecccccCCCCCcccccchhhH-HHHHHHHHhcccCCCCEEEEcCCCCCCcchhhhhhhh--cCceEEEeeCCchh
Q 028600 100 YGVKCMSMGFLVPSSSPVVWRGPMVM-SALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQTL--QLSGALIVSTPQDV 176 (207)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~l~~~~~D~IiiD~~~~~~~~~~~~~~~~--~~d~vi~v~~~~~~ 176 (207)
.+++++|++...+..... ....... ..++ .+..+. ++||||||||++.+....+ ...+. .+|.+++|++++..
T Consensus 79 ~~l~vlp~~~~~~~~~~~-~~~~~~~~~~l~-~l~~~~-~~yD~ilID~~g~~~~~~~-~~~l~~~~ad~vliv~~p~~~ 154 (212)
T cd02117 79 GGVKCVESGGPEPGVGCA-GRGVITAVNLLE-KEGFAE-DDLDVVLYDVLGDVVCGGF-AMPIREGKADEIYIVTSGEFM 154 (212)
T ss_pred CCcEEEeCCCCCCCcccC-CcchhhHHHHHH-hccccc-cCCCEEEEecCCCceeccc-ccccccccCcEEEEEecccHH
Confidence 789999988755433221 1111111 2233 566666 8999999999765532222 12222 79999999999999
Q ss_pred hHHHHHHHHHHhhhC----CCCeeEEEEccccC
Q 028600 177 ALIDARKGITMFSKV----QVPVCSFLAQIISS 205 (207)
Q Consensus 177 ~~~~~~~~l~~l~~~----~~~~~g~v~N~~~~ 205 (207)
++..+.++++.+++. +.++.|+|+|+++.
T Consensus 155 sl~~~~~l~~~i~~~~~~~~~~~~gvv~N~~~~ 187 (212)
T cd02117 155 ALYAANNICKGIRKYAKSGGVRLGGLICNSRNT 187 (212)
T ss_pred HHHHHHHHHHHHHHhCcccCCcEEEEEEeCCCC
Confidence 998888777776654 55678999999975
No 12
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=99.96 E-value=3.2e-28 Score=178.80 Aligned_cols=133 Identities=61% Similarity=0.974 Sum_probs=107.8
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccccCCccccccccceecccccceeecccccCC
Q 028600 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGFLVP 112 (207)
Q Consensus 33 ~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (207)
+|+|+|+|||+||||+|.|||.++|+ .|+||++||+|++++++++.+.
T Consensus 1 vi~v~s~kgG~GKTt~a~~LA~~la~-~g~~vllvD~D~q~~~~~~~~~------------------------------- 48 (169)
T cd02037 1 VIAVMSGKGGVGKSTVAVNLALALAK-LGYKVGLLDADIYGPSIPKMWR------------------------------- 48 (169)
T ss_pred CEEEecCCCcCChhHHHHHHHHHHHH-cCCcEEEEeCCCCCCCchHHHh-------------------------------
Confidence 58999999999999999999999999 9999999999999977654310
Q ss_pred CCCcccccchhhHHHHHHHHHhcccCCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCchhhHHHHHHHHHHhhhCC
Q 028600 113 SSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQ 192 (207)
Q Consensus 113 ~~~~~~~~~~~~~~~l~~~~~~l~~~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~~~~~~~~~~l~~l~~~~ 192 (207)
.......++..++.+....|||||+|+||++++.......+..+|.+++|+.|+..++..+.++++.+++.+
T Consensus 49 --------~~~~~~~l~~~~~~~~~~~yD~VIiD~pp~~~~~~~~~~~~~~ad~viiV~~p~~~s~~~~~~~~~~l~~~~ 120 (169)
T cd02037 49 --------GPMKMGAIKQFLTDVDWGELDYLVIDMPPGTGDEHLTLAQSLPIDGAVIVTTPQEVALDDVRKAIDMFKKVN 120 (169)
T ss_pred --------CcchHHHHHHHHHHhhcCCCCEEEEeCCCCCcHHHHHHHhccCCCeEEEEECCchhhHHHHHHHHHHHHhcC
Confidence 001123455566554327899999999998875443222124799999999999999999999999999999
Q ss_pred CCeeEEEEccccC
Q 028600 193 VPVCSFLAQIISS 205 (207)
Q Consensus 193 ~~~~g~v~N~~~~ 205 (207)
.++.|+|+|++..
T Consensus 121 ~~~~gvv~N~~~~ 133 (169)
T cd02037 121 IPILGVVENMSYF 133 (169)
T ss_pred CCeEEEEEcCCcc
Confidence 9999999999863
No 13
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=99.96 E-value=4.1e-29 Score=221.09 Aligned_cols=189 Identities=13% Similarity=0.097 Sum_probs=152.2
Q ss_pred eEEEEeecCccccccccccccccCCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccccC
Q 028600 5 FRIFTRLGGVRYYAAFGSKDLKIDGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQ 84 (207)
Q Consensus 5 ~~~~~~~~~~r~~~~~~~~~~~~~~~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~~ 84 (207)
+.+.|+++.+|+++.+.... ..+|+|+|+|++||+||||+|+|||.++|+ .|+||++||+|++.++++..|+...
T Consensus 524 s~~~Ea~r~lr~~l~~~~~~----~~~kvi~vts~~~G~GKTt~a~nLA~~lA~-~g~rvLlID~D~~~~~l~~~~~~~~ 598 (754)
T TIGR01005 524 PVAEEELRVKEEAVAEAKSV----AEPEVVETQRPRPVLGKSDIEANAAALIAS-GGKRALLIDADGRKAALSQILVARE 598 (754)
T ss_pred CcchHHHHHHHHHHhhhccC----CCceEEEeecCCCCCChhHHHHHHHHHHHh-CCCeEEEEeCCCCchhHHHHhCCcc
Confidence 34578889999999887643 348999999999999999999999999999 9999999999999999999998876
Q ss_pred Ccccccc--------ccceecccccceeecccccCCCCCcccccchhhHHHHHHHHHhcccCCCCEEEEcCCCCCCcchh
Q 028600 85 KPEVTKD--------MKMVPIENYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQL 156 (207)
Q Consensus 85 ~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~D~IiiD~~~~~~~~~~ 156 (207)
..++.+. ..+......+++++|.|...+.+... .....+.++++.++ +.||||||||||..+....
T Consensus 599 ~~gl~~~l~~~~~~~~~i~~~~~~~l~~l~~g~~~~~~~~l-----l~~~~~~~~l~~l~-~~yD~IiID~pp~~~~~d~ 672 (754)
T TIGR01005 599 VSGLLDLLAGLRSLLLDLTASGAASLPMLDSGLFPHGITEL-----LASPAMFSLVIHAR-LYSDCVVVDVGTADPVRDM 672 (754)
T ss_pred cCChHHHHcCCccHHHHhccCCCCCeeEecCCCCCCCHHHH-----hccHHHHHHHHHHH-hhCCEEEEcCCCcchhHHH
Confidence 6655432 12333456789999998543322221 22456788899998 9999999999998764333
Q ss_pred hhhhhhcCceEEEeeCCchhhHHHHHHHHHHhhhCCCCeeEEEEccccC
Q 028600 157 TTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 157 ~~~~~~~~d~vi~v~~~~~~~~~~~~~~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
......+|.+++|+.++.++...+.+.++.+++.+.+++|+|+|+++.
T Consensus 673 -~~l~~~~D~vl~v~~~~~~~~~~~~~~~~~l~~~~~~~~GvvlN~~~~ 720 (754)
T TIGR01005 673 -RAAARLAIIMLLVTAYDRVVVECGRADAQGISRLNGEVTGVFLNMLDP 720 (754)
T ss_pred -HHhhhhCCeEEEEEEeCceeHHHHHHHHHHHHhcCCceEEEEecCCCh
Confidence 223336999999999999999999999999999999999999999874
No 14
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=99.96 E-value=8.7e-28 Score=188.03 Aligned_cols=164 Identities=23% Similarity=0.347 Sum_probs=127.4
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccccCCc--ccccc--------cccee-ccc
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKP--EVTKD--------MKMVP-IEN 99 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~~~~--~~~~~--------~~~~~-~~~ 99 (207)
+|+|+|+|.|||+||||+++|||.++|+ .|+||++||+|++.++++.+++.+... ++.+. ..+.. ...
T Consensus 1 ~~ii~v~s~kGGvGKTt~a~~lA~~la~-~g~~vlliD~D~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 79 (261)
T TIGR01968 1 ARVIVITSGKGGVGKTTTTANLGTALAR-LGKKVVLIDADIGLRNLDLLLGLENRIVYTLVDVVEGECRLQQALIKDKRL 79 (261)
T ss_pred CeEEEEecCCCCccHHHHHHHHHHHHHH-cCCeEEEEECCCCCCCeeEEeCCCCcCCCCHHHHhcCcCcHHHHhhcCCCC
Confidence 5899999999999999999999999999 999999999999988888888875421 11110 01111 123
Q ss_pred ccceeecccccCCCCCcccccchhhHHHHHHHHHhcccCCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCchhhHH
Q 028600 100 YGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALI 179 (207)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~~~~~ 179 (207)
.+++++|.+..... .......+.++++.++ +.|||||||+||+++. ....++..+|.+|+|+.++..++.
T Consensus 80 ~~l~~l~~~~~~~~-------~~~~~~~l~~~l~~l~-~~~D~viiD~p~~~~~--~~~~~l~~aD~viiv~~~~~~s~~ 149 (261)
T TIGR01968 80 KNLYLLPASQTRDK-------DAVTPEQMKKLVNELK-EEFDYVIIDCPAGIES--GFRNAVAPADEAIVVTTPEVSAVR 149 (261)
T ss_pred CCeEEEeCCCchhh-------hhCCHHHHHHHHHHHH-HhCCEEEEeCCCCcCH--HHHHHHHhCCeEEEEcCCCcHHHH
Confidence 46777776642211 1123456888888888 8999999999998874 335566789999999999999999
Q ss_pred HHHHHHHHhhhCCCCeeEEEEccccC
Q 028600 180 DARKGITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 180 ~~~~~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
.+.++++.+++.+....++++|+++.
T Consensus 150 ~~~~~~~~l~~~~~~~~~iviN~~~~ 175 (261)
T TIGR01968 150 DADRVIGLLEAKGIEKIHLIVNRLRP 175 (261)
T ss_pred HHHHHHHHHHHcCCCceEEEEeCcCc
Confidence 99999999998877667999999864
No 15
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=99.96 E-value=4.5e-28 Score=199.63 Aligned_cols=172 Identities=22% Similarity=0.250 Sum_probs=125.5
Q ss_pred CCCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccccCCcc------ccc----------c-
Q 028600 29 GVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPE------VTK----------D- 91 (207)
Q Consensus 29 ~~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~~~~~------~~~----------~- 91 (207)
+.+++|+|+|.|||+||||+++|||.+||+ .|+||++||+|+++ +++.++|..+... +.+ .
T Consensus 119 ~~~~vIav~n~KGGvGKTTta~nLA~~LA~-~G~rVLlIDlDpQ~-~lt~~~g~~~~~~~~~~~tl~~~l~~~~~~~~~~ 196 (405)
T PRK13869 119 EHLQVIAVTNFKGGSGKTTTSAHLAQYLAL-QGYRVLAVDLDPQA-SLSALLGVLPETDVGANETLYAAIRYDDTRRPLR 196 (405)
T ss_pred CCceEEEEEcCCCCCCHHHHHHHHHHHHHh-cCCceEEEcCCCCC-CHHHHcCCCccccccccccHHHHHhccccCCCHH
Confidence 457999999999999999999999999999 99999999999985 7777777643221 100 0
Q ss_pred ccceecccccceeecccccCCCCCccc--------ccchhhHHHHHHHHHhcccCCCCEEEEcCCCCCCcchhhhhhhhc
Q 028600 92 MKMVPIENYGVKCMSMGFLVPSSSPVV--------WRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQTLQ 163 (207)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~l~~~~~~l~~~~~D~IiiD~~~~~~~~~~~~~~~~~ 163 (207)
..+.+....+++++|.+..+..-.... .........+++.++.+. ..||||||||||+++ ..+..++..
T Consensus 197 ~~i~~t~~~~ldliPa~~~l~~~e~~~~~~~~~~~~~~~~~~~~L~~~L~~~~-~~yD~IiIDtpP~l~--~~t~~al~a 273 (405)
T PRK13869 197 DVIRPTYFDGLHLVPGNLELMEFEHTTPKALSDKGTRDGLFFTRVAQAFDEVA-DDYDVVVIDCPPQLG--FLTLSGLCA 273 (405)
T ss_pred HheeccCCCCeeEecCCHHHHHHHHHhHHHHhhhcccchhHHHHHHHHHHHhh-ccCCEEEEECCCchh--HHHHHHHHH
Confidence 112334456788888764221100000 001112356888888888 899999999999998 567788889
Q ss_pred CceEEEeeCCchhhHHHHHHHHHH-------hhhC--C--CCeeEEEEccccC
Q 028600 164 LSGALIVSTPQDVALIDARKGITM-------FSKV--Q--VPVCSFLAQIISS 205 (207)
Q Consensus 164 ~d~vi~v~~~~~~~~~~~~~~l~~-------l~~~--~--~~~~g~v~N~~~~ 205 (207)
+|.+|+|+.++..++..+.++++. +++. + ...+++++|+++.
T Consensus 274 Ad~viiPv~p~~~~~~~~~~~l~~~~~~~~~i~~~~~~~~~~~~~il~t~~~~ 326 (405)
T PRK13869 274 ATSMVITVHPQMLDIASMSQFLLMTRDLLGVVKEAGGNLQYDFIRYLLTRYEP 326 (405)
T ss_pred cCEEEEecCCcHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcceeEEEEEeECC
Confidence 999999999999988888877752 2222 2 3467899999985
No 16
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=99.95 E-value=1.1e-27 Score=188.77 Aligned_cols=170 Identities=21% Similarity=0.184 Sum_probs=120.1
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccccCCccccc-----------cccceeccc
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTK-----------DMKMVPIEN 99 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~~~~~~~~-----------~~~~~~~~~ 99 (207)
||+|+|+ +|||+||||+++|||.+||+ .|+||++||+|++.++...++|.....++.+ .........
T Consensus 1 ~~~iav~-gKGGVGKTT~a~nLA~~La~-~G~rVllvD~Dpq~~~~~~l~g~~~~~~~~d~l~~~~~~~~~~~~~i~~~~ 78 (273)
T PRK13232 1 MRQIAIY-GKGGIGKSTTTQNLTAALST-MGNKILLVGCDPKADSTRMLLGGLNQKTVLDTLRSEGDEGVDLDVVMQPGF 78 (273)
T ss_pred CCEEEEE-CCCCCcHHHHHHHHHHHHHh-hCCCeEEEecccccccchhhcCCCCCCcHHHHHHhcCCCCCCHHHEEEeCC
Confidence 4899999 99999999999999999999 9999999999999988877766432222111 011222234
Q ss_pred ccceeecccccCCCCCcccccchhhHHHHHHHHHhcccCCCCEEEEcCCCCCCcchh-hhhhhhcCceEEEeeCCchhhH
Q 028600 100 YGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQL-TTTQTLQLSGALIVSTPQDVAL 178 (207)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~D~IiiD~~~~~~~~~~-~~~~~~~~d~vi~v~~~~~~~~ 178 (207)
.+++++|.+..... .....+.......+.+.+..+. .+||||||||++.+....+ ...++..+|.+++|+.|+..++
T Consensus 79 ~~i~~i~~~~~~~~-~~~~~~~~~~~~~l~~~l~~~~-~~yD~vlID~~~~~~~~~~~~~~al~aad~vlip~~p~~~sl 156 (273)
T PRK13232 79 GDIKCVESGGPEPG-VGCAGRGIITSIGLLENLGAYT-DDLDYVFYDVLGDVVCGGFAMPIREGKAKEIYIVASGELMAI 156 (273)
T ss_pred CCeEEEeCCCCCCC-CCCCCCchhHHHHHHHHccccc-ccCCEEEEecCCCeeECCEeccccccccceEEEecCchHHHH
Confidence 67888887653221 1111122222335777777777 8899999999876642222 1112236899999999999999
Q ss_pred HHHHHHHHHhhh---CCCCeeEEEEcccc
Q 028600 179 IDARKGITMFSK---VQVPVCSFLAQIIS 204 (207)
Q Consensus 179 ~~~~~~l~~l~~---~~~~~~g~v~N~~~ 204 (207)
..+..+++.++. .+.++.|+|+|+.+
T Consensus 157 ~~~~~~~k~l~~~~~~~l~~~GiV~n~~~ 185 (273)
T PRK13232 157 YAANNICKGLAKFAKGGARLGGIICNSRN 185 (273)
T ss_pred HHHHHHHHHHHHHhCCCCceeEEEEeCCC
Confidence 998888777774 35678899999864
No 17
>COG0455 flhG Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]
Probab=99.95 E-value=2.2e-27 Score=183.78 Aligned_cols=167 Identities=28% Similarity=0.378 Sum_probs=136.1
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccccCCcc-cccc-------ccceeccc-c
Q 028600 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPE-VTKD-------MKMVPIEN-Y 100 (207)
Q Consensus 30 ~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~~~~~-~~~~-------~~~~~~~~-~ 100 (207)
++++|+|.|+|||+||||+++||+.++++..|++|++||+|...++++.+++...... +.+. ........ .
T Consensus 1 ~~~~Iav~SgKGGvGKTtitanlga~~~~~~~k~V~~iDaD~g~~nL~~~~g~~~~~~~l~dvL~~~~~~~Di~~~~~~~ 80 (262)
T COG0455 1 MTKVIAVVSGKGGVGKTTITANLGAALAALGGKVVLLIDADLGLGNLSLLLGVESKPTTLHDVLAGEASIEDIIYETPQD 80 (262)
T ss_pred CCEEEEEEecCCCccHHHHHHhHHHHHHhhCCCeEEEEecCCCCCcHHHHhCCCCCcccHHHHHhCCCCHhHeeeecCcC
Confidence 3789999999999999999999966666648888899999999999999999988554 5442 22333333 8
Q ss_pred cceeecccccCCCCCcccccchhhHHHHHHHHHhcccCCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCchhhHHH
Q 028600 101 GVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALID 180 (207)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~~~~~~ 180 (207)
+++++|.+....... ....+.++.+++.+. ..|||||+|||++++.... ..+..+|.+|+|++|+..++.+
T Consensus 81 gl~vipg~~~~~~~~------~~~~~~~~~~~~~l~-~~~D~iliD~~aGl~~~~~--~~~~~sd~~viVt~pe~~si~~ 151 (262)
T COG0455 81 GLYVLPGGSGLEDLA------KLDPEDLEDVIKELE-ELYDYILIDTGAGLSRDTL--SFILSSDELVIVTTPEPTSITD 151 (262)
T ss_pred CEEEeeCCCChHHHh------hcCHHHHHHHHHHHH-hcCCEEEEeCCCCccHHHH--HHHHhcCcEEEEeCCCcchHHH
Confidence 899998885333222 245678888999998 8999999999999986554 3344679999999999999999
Q ss_pred HHHHHHHhhhCCCCeeE--EEEccccC
Q 028600 181 ARKGITMFSKVQVPVCS--FLAQIISS 205 (207)
Q Consensus 181 ~~~~l~~l~~~~~~~~g--~v~N~~~~ 205 (207)
+..+++.+.+.+.+..+ +|+|++++
T Consensus 152 A~~~i~~~~~~~~~~~~~~vV~N~v~~ 178 (262)
T COG0455 152 AYKTIKILSKLGLDLLGRRVVLNRVRS 178 (262)
T ss_pred HHHHHHHHHHcCCccccceEEEEeccc
Confidence 99999999999999888 99999963
No 18
>PRK10818 cell division inhibitor MinD; Provisional
Probab=99.95 E-value=4.2e-27 Score=185.19 Aligned_cols=166 Identities=17% Similarity=0.255 Sum_probs=123.9
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccccCCcccc--c-------c-cccee-cc
Q 028600 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVT--K-------D-MKMVP-IE 98 (207)
Q Consensus 30 ~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~~~~~~~--~-------~-~~~~~-~~ 98 (207)
|+|+|+|+|.|||+||||+++|||+++|+ .|++|++||+|++.+++..++|.+...... + . ..+.. ..
T Consensus 1 m~kviav~s~KGGvGKTt~a~nlA~~la~-~g~~vllvD~D~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (270)
T PRK10818 1 MARIIVVTSGKGGVGKTTSSAAIATGLAQ-KGKKTVVIDFDIGLRNLDLIMGCERRVVYDFVNVIQGDATLNQALIKDKR 79 (270)
T ss_pred CceEEEEEeCCCCCcHHHHHHHHHHHHHH-CCCeEEEEECCCCCCChhhhhCCCcccccCHHHHhcCCCcHHHhccccCC
Confidence 47999999999999999999999999999 999999999999988888888876432111 0 0 11111 23
Q ss_pred cccceeecccccCCCCCcccccchhhHHHHHHHHHhcccCCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCchhhH
Q 028600 99 NYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVAL 178 (207)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~~~~ 178 (207)
..++.++|.+...+. .......+.++++.++...|||||||+||+++. .....+..+|.+++|++|+..++
T Consensus 80 ~~~~~~lp~~~~~~~-------~~~~~~~~~~~l~~l~~~~yd~viiD~p~~~~~--~~~~~l~~ad~vivv~~p~~~sl 150 (270)
T PRK10818 80 TENLYILPASQTRDK-------DALTREGVAKVLDDLKAMDFEFIVCDSPAGIET--GALMALYFADEAIITTNPEVSSV 150 (270)
T ss_pred cCCEEEecCCCCcch-------hhhCHHHHHHHHHHHhhcCCCEEEEeCCCCccH--HHHHHHHhCCeEEEEcCCCchHH
Confidence 467777877643211 112244567788877624799999999999884 44566778999999999999999
Q ss_pred HHHHHHHHHhhhC-------CCC-eeEEEEccccC
Q 028600 179 IDARKGITMFSKV-------QVP-VCSFLAQIISS 205 (207)
Q Consensus 179 ~~~~~~l~~l~~~-------~~~-~~g~v~N~~~~ 205 (207)
..+.++++.+++. ..+ ..++|+|+++.
T Consensus 151 ~~~~~~l~~i~~~~~~~~~~~~~~~~~vv~n~~~~ 185 (270)
T PRK10818 151 RDSDRILGILASKSRRAENGEEPIKEHLLLTRYNP 185 (270)
T ss_pred HhHHHHHHHHHHhhccccccccccceEEEEeccCH
Confidence 9999999887632 112 24899998864
No 19
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=99.95 E-value=5e-27 Score=184.78 Aligned_cols=168 Identities=21% Similarity=0.217 Sum_probs=113.5
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccccCCccccc-------------ccccee
Q 028600 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTK-------------DMKMVP 96 (207)
Q Consensus 30 ~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~~~~~~~~-------------~~~~~~ 96 (207)
|+|+|+|+ .|||+||||+++|||++||+ .|+||++||+|++. ++...++.....++.+ ...+..
T Consensus 1 m~~iIav~-~KGGVGKTT~~~nLA~~la~-~G~kVLliD~Dpq~-~~t~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~i~ 77 (270)
T PRK13185 1 MALVLAVY-GKGGIGKSTTSSNLSAAFAK-LGKKVLQIGCDPKH-DSTFTLTGKLVPTVIDILEEVDFHSEELRPEDFVY 77 (270)
T ss_pred CceEEEEE-CCCCCCHHHHHHHHHHHHHH-CCCeEEEEeccCCc-chhhhhcCCCCCcHHHHHHhccccccCCCHHHhee
Confidence 47999998 69999999999999999999 99999999999987 4444454322222111 111222
Q ss_pred cccccceeecccccCCCCCcccccchhhHHHHHHHHHhcccCCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCchh
Q 028600 97 IENYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDV 176 (207)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~~ 176 (207)
....+++++|.+..+................+++ + .++ .+||||||||++.+..... ...+..+|.+|+|+.++..
T Consensus 78 ~~~~~l~~ip~~~~~~~~~~~~~~~~~~~~~l~~-~-~~~-~~yD~viIDt~g~~~~~~~-~~~l~~AD~viip~~~~~~ 153 (270)
T PRK13185 78 EGYNGVDCVEAGGPPAGTGCGGYVVGETVKLLKE-H-HLL-DDYDVILFDVLGDVVCGGF-AAPLQYADYALIVTANDFD 153 (270)
T ss_pred eCCCCcEEEECCCCCCCCCccchhHHHHHHHHHh-c-Ccc-ccCCEEEEecCCCcccCcc-cchhhhCcEEEEEecCchh
Confidence 3346899998886443221110000011112222 1 244 7899999999876654332 3445579999999999999
Q ss_pred hHHHHHHHHHHhh----hCCCCeeEEEEcccc
Q 028600 177 ALIDARKGITMFS----KVQVPVCSFLAQIIS 204 (207)
Q Consensus 177 ~~~~~~~~l~~l~----~~~~~~~g~v~N~~~ 204 (207)
++..+.++++.++ +.++++.|+|+|+++
T Consensus 154 sl~~~~~~~~~i~~~~~~~~l~i~giv~N~~~ 185 (270)
T PRK13185 154 SIFAANRIAAAIQAKAKNYKVRLAGVIANRSA 185 (270)
T ss_pred hHHHHHHHHHHHHhhhhccCCCceEEEEeccC
Confidence 9988888887765 335667899999975
No 20
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=99.95 E-value=4e-27 Score=182.90 Aligned_cols=169 Identities=21% Similarity=0.241 Sum_probs=117.7
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccccCCcc--cccc-------ccceeccccc
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPE--VTKD-------MKMVPIENYG 101 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~~~~~--~~~~-------~~~~~~~~~~ 101 (207)
||+|+|+|.|||+||||+|.|||.++|+ .|+||++||+|+++ +++..++.+.... +.+. .........+
T Consensus 1 m~iI~v~s~KGGvGKTt~a~nla~~la~-~g~~VlliD~D~q~-~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 78 (246)
T TIGR03371 1 MKVIAIVGVKGGVGKTTLTANLASALKL-LGEPVLAIDLDPQN-LLRLHFGMDWSVRDGWARALLNGEPWAAAAYRSSDG 78 (246)
T ss_pred CcEEEEEeCCCCccHHHHHHHHHHHHHh-CCCcEEEEeCCCcc-hHHHHhCCCCccCCcHHHHHhcCCChHHhHhhcCCC
Confidence 5799999999999999999999999999 99999999999986 5666776554321 1111 1111122356
Q ss_pred ceeecccccCCCCCcccccchhhHHHHHHHHHhcccCCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCchhhHHHH
Q 028600 102 VKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDA 181 (207)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~~~~~~~ 181 (207)
++++|.+.......... .......+++.++.+++..|||||||+||+++ .+...++..+|.+++|+.++..+...+
T Consensus 79 l~~ip~~~~~~~~~~~~--~~~~~~~l~~~l~~l~~~~~D~viiD~pp~~~--~~~~~~l~~ad~vii~~~~~~~s~~~~ 154 (246)
T TIGR03371 79 VLFLPFGDLSADEREAY--QAHDAGWLARLLQQLDLAARDWVLIDVPRGPS--PITRQALAAADLVLVVVNADAACYATL 154 (246)
T ss_pred eEEecCCCCcHHHHHHH--hhcCHHHHHHHHHhcccCCCCEEEEECCCCch--HHHHHHHHhCCeEEEEeCCCHHHHHHH
Confidence 77777654221111110 01124567788888862346999999999877 555677779999999999999999888
Q ss_pred HHH-HHHhhhCCC-CeeEEEEccccC
Q 028600 182 RKG-ITMFSKVQV-PVCSFLAQIISS 205 (207)
Q Consensus 182 ~~~-l~~l~~~~~-~~~g~v~N~~~~ 205 (207)
.+. .+.++.... ...++|+|+++.
T Consensus 155 ~~~~~~l~~~~~~~~~~~iv~n~~~~ 180 (246)
T TIGR03371 155 HQQALALFAGSGPRIGPHFLINQFDP 180 (246)
T ss_pred HHHHHHHhhcccccccceEEeeccCc
Confidence 844 444442322 236899999875
No 21
>COG2894 MinD Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]
Probab=99.95 E-value=2e-27 Score=174.47 Aligned_cols=166 Identities=21% Similarity=0.295 Sum_probs=132.1
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccccCCcccccc-----------ccceecc
Q 028600 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKD-----------MKMVPIE 98 (207)
Q Consensus 30 ~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~~~~~~~~~-----------~~~~~~~ 98 (207)
|+++|.|+|+|||+||||+++||+.+||+ .|+||++||+|..--++...+|.+...-++.. ..+....
T Consensus 1 M~~iIVvTSGKGGVGKTTttAnig~aLA~-~GkKv~liD~DiGLRNLDlimGlE~RiVYd~vdVi~g~~~l~QALIkDKr 79 (272)
T COG2894 1 MARIIVVTSGKGGVGKTTTTANIGTALAQ-LGKKVVLIDFDIGLRNLDLIMGLENRIVYDLVDVIEGEATLNQALIKDKR 79 (272)
T ss_pred CceEEEEecCCCCcCccchhHHHHHHHHH-cCCeEEEEecCcCchhhhhhhcccceeeeeehhhhcCccchhhHhhcccc
Confidence 47899999999999999999999999999 99999999999988899999998865322221 1233345
Q ss_pred cccceeecccccCCCCCcccccchhhHHHHHHHHHhcccCCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCchhhH
Q 028600 99 NYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVAL 178 (207)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~~~~ 178 (207)
..++.++|....-..+. ...+.++.++++|++.+|||||+|+|+++... + ..++..+|..++|++|+..+.
T Consensus 80 ~~nL~lLPAsQtrdKda-------lt~E~v~~vv~eL~~~~fDyIi~DsPAGIE~G-~-~~A~~~Ad~AiVVtnPEvSsV 150 (272)
T COG2894 80 LENLFLLPASQTRDKDA-------LTPEGVKKVVNELKAMDFDYIIIDSPAGIEQG-F-KNAVYFADEAIVVTNPEVSSV 150 (272)
T ss_pred CCceEecccccccCccc-------CCHHHHHHHHHHHHhcCCCEEEecCcchHHHH-H-HhhhhccceEEEEcCCCcccc
Confidence 56777777665444333 44788899999998678999999999988743 3 455668999999999999999
Q ss_pred HHHHHHHHHhhhCC----CC---eeEEEEccccC
Q 028600 179 IDARKGITMFSKVQ----VP---VCSFLAQIISS 205 (207)
Q Consensus 179 ~~~~~~l~~l~~~~----~~---~~g~v~N~~~~ 205 (207)
++.-+.+-.++..+ .. ...+++||++.
T Consensus 151 RDsDRiiGlLesk~~rae~~~~~~~~llvnR~~p 184 (272)
T COG2894 151 RDSDRIIGLLESKSRRAEIGEEPKEHLLLNRYRP 184 (272)
T ss_pred ccchhheeehhcccchhhcCCcccceEEEEccCH
Confidence 99999998888654 22 25899999873
No 22
>PRK13705 plasmid-partitioning protein SopA; Provisional
Probab=99.95 E-value=3.5e-27 Score=193.18 Aligned_cols=173 Identities=22% Similarity=0.209 Sum_probs=122.8
Q ss_pred CCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEec-CCCCCCccccccccCCc------ccc---------cc
Q 028600 28 DGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDA-DVYGPSVPMMMKIDQKP------EVT---------KD 91 (207)
Q Consensus 28 ~~~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~-d~~~~~l~~~~~~~~~~------~~~---------~~ 91 (207)
+.++++|+|++.|||+||||+++|||.+||+ .|+||++||+ |+|+ +++..+|..+.. .+. ..
T Consensus 103 ~~~~~vIai~n~KGGVGKTT~a~nLA~~LA~-~G~rVLlID~~DpQ~-nlt~~~g~~~~~~~~~~~~l~~~~~~~~~~~~ 180 (388)
T PRK13705 103 DVFPPVIGVAAHKGGVYKTSVSVHLAQDLAL-KGLRVLLVEGNDPQG-TASMYHGWVPDLHIHAEDTLLPFYLGEKDDAT 180 (388)
T ss_pred CCCCeEEEEECCCCCchHHHHHHHHHHHHHh-cCCCeEEEcCCCCCC-chhhhcCcCccccccccccHHHHHhcCCCchh
Confidence 3558999999999999999999999999999 9999999996 9987 556666653321 110 01
Q ss_pred ccceecccccceeecccccCCCCCccc---c----cchhhHHHHHHHHHhcccCCCCEEEEcCCCCCCcchhhhhhhhcC
Q 028600 92 MKMVPIENYGVKCMSMGFLVPSSSPVV---W----RGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQTLQL 164 (207)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~----~~~~~~~~l~~~~~~l~~~~~D~IiiD~~~~~~~~~~~~~~~~~~ 164 (207)
..+.+....+++++|.+.......... . ........+++.++.++ .+||||||||||+++ ..+.+++..+
T Consensus 181 ~~i~~t~~~~ldliPa~~~l~~~e~~l~~~~~~~~~~~~~~~~L~~~l~~l~-~~YD~IiIDtpP~l~--~~t~nal~Aa 257 (388)
T PRK13705 181 YAIKPTCWPGLDIIPSCLALHRIETELMGKFDEGKLPTDPHLMLRLAIETVA-HDYDVIVIDSAPNLG--IGTINVVCAA 257 (388)
T ss_pred hheecCCCCCEEEEeCCHHHHHHHHHHHHhhhcccccccHHHHHHHHHHhhh-ccCCEEEEECCCchh--HHHHHHHHHc
Confidence 122334456888888764221100000 0 00112345778888888 899999999999998 6667788899
Q ss_pred ceEEEeeCCchhhHHHHHHHHHHhhhC-------C-CCeeEEEEccccC
Q 028600 165 SGALIVSTPQDVALIDARKGITMFSKV-------Q-VPVCSFLAQIISS 205 (207)
Q Consensus 165 d~vi~v~~~~~~~~~~~~~~l~~l~~~-------~-~~~~g~v~N~~~~ 205 (207)
|.+|+|+.++..++..+.++++.+.+. + .+.+.+++|+++.
T Consensus 258 D~viiP~~~~~~s~~g~~~~~~~i~~~~~~~~~~~~~~~l~il~t~~~~ 306 (388)
T PRK13705 258 DVLIVPTPAELFDYTSALQFFDMLRDLLKNVDLKGFEPDVRILLTKYSN 306 (388)
T ss_pred CEEEEecCCcHHHHHHHHHHHHHHHHHHHHHhhccCCCCeEEEEEEecC
Confidence 999999999999888887776665532 1 1335689999874
No 23
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=99.95 E-value=1.2e-26 Score=183.06 Aligned_cols=171 Identities=20% Similarity=0.213 Sum_probs=117.0
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccccCCccccc-----------cccceecc
Q 028600 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTK-----------DMKMVPIE 98 (207)
Q Consensus 30 ~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~~~~~~~~-----------~~~~~~~~ 98 (207)
|+|+|+|+ .|||+||||++.|||++||+..|+||++||+|++.+....+++.....++.+ ...+....
T Consensus 1 M~~vIav~-~KGGVGKTT~a~nLA~~La~~~G~rvLliD~Dpq~~~t~~~~g~~~~~~l~~~l~~~~~~~~~~~~~~~~~ 79 (275)
T PRK13233 1 MTRKIAIY-GKGGIGKSTTTQNTAAAMAYFHDKKVFIHGCDPKADSTRLILGGKPQTTMMDTLRELGEEKVTPDKVIKTG 79 (275)
T ss_pred CceEEEEE-cCCCCcHHHHHHHHHHHHHHhcCCeEEEeccCcCcChHHHHhCCCCCCcHHHHHHHhCCCCCCHHHHeeeC
Confidence 46899999 8999999999999999999724999999999999976655555443322211 12233344
Q ss_pred cccceeecccccCCCCCcccccchhhHHHHHHHHHhcccCCCCEEEEcCCCCCCcchhhhhhh--hcCceEEEeeCCchh
Q 028600 99 NYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQT--LQLSGALIVSTPQDV 176 (207)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~D~IiiD~~~~~~~~~~~~~~~--~~~d~vi~v~~~~~~ 176 (207)
..+++++|.+...... ....+.......+.+.++.+. ..||||||||++.+....+ ...+ ..+|.+|+|+.++..
T Consensus 80 ~~~l~~ipa~~~~~~~-~~~~~~~~~~~~l~~~l~~~~-~~yD~iliD~~~~~~~~al-~~~~~~~aad~viIp~~p~~~ 156 (275)
T PRK13233 80 FKDIRCVESGGPEPGV-GCAGRGVITAIDLMEENGAYT-DDLDFVFFDVLGDVVCGGF-AMPIRDGKAQEVYIVASGEMM 156 (275)
T ss_pred CCCcEEEECCCCCCCC-CCCCcchhHHHHHHHHcCCcc-CCCCEEEEecCCceeeccc-cccchhccCceEEEeccccHH
Confidence 5688899887544321 111111111123566667777 8899999999654332222 1111 158999999999999
Q ss_pred hHHHHHHHHHHh----hhCCCCeeEEEEcccc
Q 028600 177 ALIDARKGITMF----SKVQVPVCSFLAQIIS 204 (207)
Q Consensus 177 ~~~~~~~~l~~l----~~~~~~~~g~v~N~~~ 204 (207)
++..+.++++.+ ++.+++++|+|+|+..
T Consensus 157 sl~g~~~l~~~i~~~~~~~~l~~~Giv~n~~~ 188 (275)
T PRK13233 157 AIYAANNICKGLVKYAEQSGVRLGGIICNSRN 188 (275)
T ss_pred HHHHHHHHHHHHHHHHhcCCCceeEEEeeCCC
Confidence 999988887665 3457778999999753
No 24
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=99.95 E-value=7.9e-27 Score=190.81 Aligned_cols=172 Identities=23% Similarity=0.204 Sum_probs=122.8
Q ss_pred CCCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEec-CCCCCCccccccccCCccccc---------------cc
Q 028600 29 GVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDA-DVYGPSVPMMMKIDQKPEVTK---------------DM 92 (207)
Q Consensus 29 ~~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~-d~~~~~l~~~~~~~~~~~~~~---------------~~ 92 (207)
+.+++|+|+|.|||+||||+++|||.+||+ .|+||++||+ |+|+ +++.++|..+...... ..
T Consensus 104 ~~~~vIav~n~KGGVGKTTta~nLA~~LA~-~G~rVLlIDl~DpQ~-nlt~~~g~~~~~~~~~~~tl~~~~~~~~~~~~~ 181 (387)
T PHA02519 104 KNPVVLAVMSHKGGVYKTSSAVHTAQWLAL-QGHRVLLIEGNDPQG-TASMYHGYVPDLHIHADDTLLPFYLGERDNAEY 181 (387)
T ss_pred CCceEEEEecCCCCCcHHHHHHHHHHHHHh-CCCcEEEEeCCCCCC-CcccccCcCccccccccccHHHHHhCCCcchHh
Confidence 447999999999999999999999999999 9999999996 9987 5666777643211110 11
Q ss_pred cceecccccceeecccccCCCCCcccc----cc---hhhHHHHHHHHHhcccCCCCEEEEcCCCCCCcchhhhhhhhcCc
Q 028600 93 KMVPIENYGVKCMSMGFLVPSSSPVVW----RG---PMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQTLQLS 165 (207)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~---~~~~~~l~~~~~~l~~~~~D~IiiD~~~~~~~~~~~~~~~~~~d 165 (207)
.+.+....+++++|.+..+........ .. ......+.+.++.+. .+||||||||||+++ ..+..++..+|
T Consensus 182 ~i~~t~~~~ldliPa~~~l~~~e~~l~~~~~~~~~~~~~~~~L~~~L~~l~-~~YD~IlID~pPslg--~lt~nAL~AAd 258 (387)
T PHA02519 182 AIKPTCWPGLDIIPSCLALHRIETDLMQYHDAGKLPHPPHLMLRAAIESVW-DNYDIIVIDSAPNLG--TGTINVVCAAD 258 (387)
T ss_pred heecCCCCCEEEEECChHHHHHHHHHHHhhhccccccCHHHHHHHHHHHhh-ccCCEEEEECCCCcc--HHHHHHHHHhC
Confidence 223344578888887642211000000 00 012355788888888 899999999999998 66778888999
Q ss_pred eEEEeeCCchhhHHHHHHHHHHhhh-------CC-CCeeEEEEccccC
Q 028600 166 GALIVSTPQDVALIDARKGITMFSK-------VQ-VPVCSFLAQIISS 205 (207)
Q Consensus 166 ~vi~v~~~~~~~~~~~~~~l~~l~~-------~~-~~~~g~v~N~~~~ 205 (207)
.+|+|+.++..++..+.++++.+.+ .+ .+.+.+++|+++.
T Consensus 259 ~vliPv~~~~~s~~s~~~~~~~i~~~~~~~~~~~~~~~l~il~t~~~~ 306 (387)
T PHA02519 259 VIVVATPAELFDYVSVLQFFTMLLDLLATVDLGGFEPVVRLLLTKYSL 306 (387)
T ss_pred EEEEecCCcHHHHHHHHHHHHHHHHHHHHHHhcccCCCeEEEEeeECC
Confidence 9999999999988877766655422 12 2345689999885
No 25
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=99.94 E-value=5.4e-26 Score=183.04 Aligned_cols=163 Identities=23% Similarity=0.274 Sum_probs=128.4
Q ss_pred CCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccccCCccccc--c------------cc
Q 028600 28 DGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTK--D------------MK 93 (207)
Q Consensus 28 ~~~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~~~~~~~~--~------------~~ 93 (207)
...+++|+|+|.|||+||||+++|||.++++ .|++|++||+|++.+++..+||.+...++.. . ..
T Consensus 90 ~~~~~vIav~~~KGGvGkTT~a~nLA~~la~-~g~~VlLvD~D~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~l~~ 168 (322)
T TIGR03815 90 PARGVVVAVIGGRGGAGASTLAAALALAAAR-HGLRTLLVDADPWGGGLDLLLGAEDVPGLRWPDLSQARGRLPAGALRD 168 (322)
T ss_pred CCCceEEEEEcCCCCCcHHHHHHHHHHHHHh-cCCCEEEEecCCCCCCeeeeecCCCCCCcCHHHHhhcCCCcCHHHHHH
Confidence 4458999999999999999999999999999 9999999999999999888888765443321 0 01
Q ss_pred ceecccccceeecccccCCCCCcccccchhhHHHHHHHHHhcccCCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCC
Q 028600 94 MVPIENYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTP 173 (207)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~ 173 (207)
..+. ..++.+++.+.... .......++.+++.++ +.|||||||+|+.++. .....+..+|.+++|+.+
T Consensus 169 ~~~~-~~~l~vl~~~~~~~--------~~~~~~~l~~~l~~l~-~~~D~VIID~p~~~~~--~~~~~L~~AD~vliV~~~ 236 (322)
T TIGR03815 169 ALPR-RGGLSVLSWGRAVG--------AALPPAAVRAVLDAAR-RGGDLVVVDLPRRLTP--AAETALESADLVLVVVPA 236 (322)
T ss_pred hCCC-cCCeEEEecCCCCc--------CCCCHHHHHHHHHHHH-hcCCEEEEeCCCCCCH--HHHHHHHHCCEEEEEcCC
Confidence 1222 34677777664321 1133567888999998 9999999999998874 456677799999999999
Q ss_pred chhhHHHHHHHHHHhhhCCCCeeEEEEcccc
Q 028600 174 QDVALIDARKGITMFSKVQVPVCSFLAQIIS 204 (207)
Q Consensus 174 ~~~~~~~~~~~l~~l~~~~~~~~g~v~N~~~ 204 (207)
+..++..+.++++.+.+.+.+ +.+|+|+..
T Consensus 237 ~~~sl~~a~r~l~~l~~~~~~-~~lVv~~~~ 266 (322)
T TIGR03815 237 DVRAVAAAARVCPELGRRNPD-LRLVVRGPA 266 (322)
T ss_pred cHHHHHHHHHHHHHHhhhCCC-eEEEEeCCC
Confidence 999999999999999876544 477888754
No 26
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=99.94 E-value=8.9e-27 Score=191.71 Aligned_cols=172 Identities=23% Similarity=0.264 Sum_probs=120.9
Q ss_pred CCCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccccCCccccc-----------------c
Q 028600 29 GVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTK-----------------D 91 (207)
Q Consensus 29 ~~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~~~~~~~~-----------------~ 91 (207)
..+++|+|+|.|||+||||+|+|||.+||+ .|+||++||+|+++ +++.+++..+...+.. .
T Consensus 102 ~~~~vI~v~n~KGGvGKTT~a~nLA~~La~-~G~rVLlID~DpQ~-~ls~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~ 179 (387)
T TIGR03453 102 EHLQVIAVTNFKGGSGKTTTAAHLAQYLAL-RGYRVLAIDLDPQA-SLSALFGYQPEFDVGENETLYGAIRYDDERRPLS 179 (387)
T ss_pred CCceEEEEEccCCCcCHHHHHHHHHHHHHh-cCCCEEEEecCCCC-CHHHHcCCCcccccccCccHHHHHhccccccCHH
Confidence 457999999999999999999999999999 99999999999975 7777777643221100 0
Q ss_pred ccceecccccceeecccccCCCCCccc-----c---cchhhHHHHHHHHHhcccCCCCEEEEcCCCCCCcchhhhhhhhc
Q 028600 92 MKMVPIENYGVKCMSMGFLVPSSSPVV-----W---RGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQTLQ 163 (207)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~---~~~~~~~~l~~~~~~l~~~~~D~IiiD~~~~~~~~~~~~~~~~~ 163 (207)
..+.+....+++++|.+.......... . ........+.+.++.++ ..||||||||||+++ ..+..++..
T Consensus 180 ~~i~~~~~~~l~lip~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~-~~yD~IiiD~pp~~~--~~~~~al~a 256 (387)
T TIGR03453 180 EIIRKTYFPGLDLVPGNLELMEFEHETPRALSRGQGGDTIFFARVGEALAEVE-DDYDVVVIDCPPQLG--FLTLSALCA 256 (387)
T ss_pred hhcccCCCCCeEEEeCCHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHH-hcCCEEEEeCCccHh--HHHHHHHHH
Confidence 112223345778888664211000000 0 00112356788888888 899999999999887 566777889
Q ss_pred CceEEEeeCCchhhHHHHHHHHH-------HhhhC----CCCeeEEEEccccC
Q 028600 164 LSGALIVSTPQDVALIDARKGIT-------MFSKV----QVPVCSFLAQIISS 205 (207)
Q Consensus 164 ~d~vi~v~~~~~~~~~~~~~~l~-------~l~~~----~~~~~g~v~N~~~~ 205 (207)
+|.+|+|+.++..++..+..+++ .+++. +...+++++|+++.
T Consensus 257 ad~viipv~p~~~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~ 309 (387)
T TIGR03453 257 ATGVLITVHPQMLDVMSMSQFLLMTGDLLGVVREAGGNLSYDFMRYLVTRYEP 309 (387)
T ss_pred cCeeEEcCCCchhhHHHHHHHHHHHHHHHHHHHHhcCCCCCceeEEEEeeECC
Confidence 99999999998887766654433 33332 24467899999874
No 27
>COG1192 Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=99.94 E-value=1.2e-26 Score=181.48 Aligned_cols=172 Identities=26% Similarity=0.324 Sum_probs=120.9
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccccCC--ccccc----------cccceec
Q 028600 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQK--PEVTK----------DMKMVPI 97 (207)
Q Consensus 30 ~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~~~--~~~~~----------~~~~~~~ 97 (207)
++++|+|+|.|||+||||+|.|||.+||+..|+||++||+|+++ ++...++.... ..... ......
T Consensus 1 ~~~iI~v~n~KGGvGKTT~a~nLa~~La~~~~~kVLliDlDpQ~-s~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 78 (259)
T COG1192 1 MMKIIAVANQKGGVGKTTTAVNLAAALAKRGGKKVLLIDLDPQG-SLTSWLGLRPDLEGDLYNLLSGLKERPDILDYTV- 78 (259)
T ss_pred CCEEEEEEecCCCccHHHHHHHHHHHHHHhcCCcEEEEeCCCcc-hhhHhcCCCcccchhHHHHHhcccccccchhccc-
Confidence 37999999999999999999999999995267999999999995 66777776554 00000 011111
Q ss_pred ccccceeecccccCCCCCcccccchhhHHHHHHHHHhcccCCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCchhh
Q 028600 98 ENYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVA 177 (207)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~~~ 177 (207)
...+++++|.........+...........++++++.+. .+||||||||||+++ .++..++..+|.+++|+.++..+
T Consensus 79 ~~~~ld~ips~~~l~~~~~~~~~~~~~~~~l~~~~~~~~-~~yD~iiID~pp~l~--~l~~nal~asd~vlIP~~~~~~~ 155 (259)
T COG1192 79 VIEGLDLIPSNIDLAEGAEIELNAVAKELLLKRLLDPVK-DDYDYIIIDTPPSLG--VLTLNALAAADHVLIPVQPEFLD 155 (259)
T ss_pred CCCCceEecCChHHHhHHHHHHhhhhHHHHHHHHhhhhc-cCCCEEEECCCCchh--HHHHHHHHHcCeeEEecCchHHH
Confidence 345667777664333201100001122344555555555 799999999999986 66678888899999999999999
Q ss_pred HHHHHHHHHHhhhCCC------CeeEEEEccccCC
Q 028600 178 LIDARKGITMFSKVQV------PVCSFLAQIISSM 206 (207)
Q Consensus 178 ~~~~~~~l~~l~~~~~------~~~g~v~N~~~~~ 206 (207)
+..+..+++.+.+... ...++++|++++.
T Consensus 156 ~~~~~~~~~~i~~~~~~~~~~~~~~~i~~~~~~~~ 190 (259)
T COG1192 156 LEGLEQLLNTLEDLLKLRRNKLIVVGILITRFDSR 190 (259)
T ss_pred HHHHHHHHHHHHHHHHhcCCCcceEEEeeceEcCC
Confidence 8888887766654422 5678999998853
No 28
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=99.94 E-value=6.3e-26 Score=178.24 Aligned_cols=166 Identities=22% Similarity=0.197 Sum_probs=111.0
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccccCCcccc-------------ccccceeccc
Q 028600 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVT-------------KDMKMVPIEN 99 (207)
Q Consensus 33 ~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~~~~~~~-------------~~~~~~~~~~ 99 (207)
+|+|+ +|||+||||+|.|||++||+ +|+||++||+|++.. +...++.....++. ....+.....
T Consensus 2 ~i~v~-gKGGvGKTT~a~nLA~~la~-~G~rvlliD~Dpq~~-~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~ 78 (267)
T cd02032 2 VLAVY-GKGGIGKSTTSSNLSVALAK-RGKKVLQIGCDPKHD-STFTLTGFLIPTVIDILEEVDFHYEELWPEDVIYEGY 78 (267)
T ss_pred EEEEe-cCCCCCHHHHHHHHHHHHHH-CCCcEEEEecCCCCC-cceeccCCCCCCHHHHHHhccccccCCChhheEEECC
Confidence 58887 59999999999999999999 999999999999864 44444432222211 1122233345
Q ss_pred ccceeecccccCCCCCcccccchhhHHHHHHHHHhcccCCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCchhhHH
Q 028600 100 YGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALI 179 (207)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~~~~~ 179 (207)
.++++++++..+................+++ +. +. .+||||||||++.+..... ..++..+|.+++|+.++..++.
T Consensus 79 ~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~-~~yD~vIIDt~g~~~~~~~-~~al~~aD~vlip~~p~~~~l~ 154 (267)
T cd02032 79 GGVDCVEAGGPPAGAGCGGYVVGETVKLLKE-LN-LF-EEYDVILFDVLGDVVCGGF-AAPLNYADYALIVTDNDFDSIF 154 (267)
T ss_pred CCcEEEEcCCCCCCccccchHHHHHHHHHHH-cc-cc-ccCCEEEEeCCCCcccccc-hhhhhhcCEEEEEecCCcccHH
Confidence 6889998876332211100000011112222 22 44 7899999999877654333 3445689999999999999988
Q ss_pred HHHHHHHHhhh----CCCCeeEEEEccccC
Q 028600 180 DARKGITMFSK----VQVPVCSFLAQIISS 205 (207)
Q Consensus 180 ~~~~~l~~l~~----~~~~~~g~v~N~~~~ 205 (207)
.+.++++.+++ .+.++.|+|+|+++.
T Consensus 155 ~~~~~~~~i~~~~~~~~l~~~giV~Nr~~~ 184 (267)
T cd02032 155 AANRIAAAVREKAKTYKVRLAGLIANRTDK 184 (267)
T ss_pred HHHHHHHHHHHHhhccCCceEEEEEeCCCH
Confidence 88888776653 366778999999863
No 29
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=99.94 E-value=6.4e-26 Score=178.32 Aligned_cols=166 Identities=22% Similarity=0.230 Sum_probs=110.9
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccccCCccccc-------------cccceeccc
Q 028600 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTK-------------DMKMVPIEN 99 (207)
Q Consensus 33 ~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~~~~~~~~-------------~~~~~~~~~ 99 (207)
+|+|. +|||+||||++.|||++||+ .|+||++||+|++. ++...++.....++.+ ...+.....
T Consensus 2 ~i~~~-gKGGVGKTT~~~nLA~~La~-~g~rVLliD~D~q~-~~~~~l~~~~~~~i~~~~~~~~~~~~~~~~~~~i~~~~ 78 (268)
T TIGR01281 2 ILAVY-GKGGIGKSTTSSNLSVAFAK-LGKRVLQIGCDPKH-DSTFTLTGRLIPTVIDVLQAVNYHYEDVRPEDVIYTGY 78 (268)
T ss_pred EEEEE-cCCcCcHHHHHHHHHHHHHh-CCCeEEEEecCccc-cccceecCCCCCcHHHHHHhccccccCCCHHHeeEeCC
Confidence 58887 79999999999999999999 99999999999987 4444443222222211 111223334
Q ss_pred ccceeecccccCCCCCcccccchhhHHHHHHHHHhcccCCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCchhhHH
Q 028600 100 YGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALI 179 (207)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~~~~~ 179 (207)
.+++++|.+...................++++ .+. .+||||||||++.+..... ..++..+|.+++|+.++..++.
T Consensus 79 ~~l~~i~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~-~~yD~ViID~~~~~~~~~~-~~~l~aAD~vlip~~~~~~sl~ 154 (268)
T TIGR01281 79 GGVDCVEAGGPPAGSGCGGYVVGETVKLLKEH--HIL-DDYDVILFDVLGDVVCGGF-ATPLQYADYALVVAANDFDALF 154 (268)
T ss_pred CCeEEEecCCCCCCCcccceehhhhHHHhhhc--ccc-ccCCEEEEecCCccccCcc-ccchhhcCEEEEEecCchhHHH
Confidence 68888887754332211110001111222221 234 7899999999876653333 2345579999999999999999
Q ss_pred HHHHHHHHhhh----CCCCeeEEEEccccC
Q 028600 180 DARKGITMFSK----VQVPVCSFLAQIISS 205 (207)
Q Consensus 180 ~~~~~l~~l~~----~~~~~~g~v~N~~~~ 205 (207)
.+.++++.+++ .++++.|+|+|+++.
T Consensus 155 ~~~~l~~~i~~~~~~~~l~~~gIV~N~~~~ 184 (268)
T TIGR01281 155 AANRIAASVQEKAKNYDVRLAGIIGNRSDA 184 (268)
T ss_pred HHHHHHHHHHHHhhcCCCceEEEEEeCCCh
Confidence 88888777654 356778999999874
No 30
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=99.94 E-value=8.9e-26 Score=178.69 Aligned_cols=165 Identities=20% Similarity=0.151 Sum_probs=111.5
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccccCCcccc-------------ccccceecccc
Q 028600 34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVT-------------KDMKMVPIENY 100 (207)
Q Consensus 34 I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~~~~~~~-------------~~~~~~~~~~~ 100 (207)
|+|++ |||+||||++.|||++||+ .|+||++||+|++.....++.+... .++. ...........
T Consensus 3 ia~~g-KGGVGKTTta~nLA~~La~-~G~rVLlID~DpQ~n~t~~l~g~~~-~~i~~~~~~~~~~~~~~~~~~~i~~~~~ 79 (290)
T CHL00072 3 LAVYG-KGGIGKSTTSCNISIALAR-RGKKVLQIGCDPKHDSTFTLTGFLI-PTIIDTLQSKDYHYEDVWPEDVIYKGYG 79 (290)
T ss_pred EEEEC-CCCCcHHHHHHHHHHHHHH-CCCeEEEEeccCCCcccccccCcCC-CCHHHHHhhcccccccCChhheEEeCCC
Confidence 88876 9999999999999999999 9999999999999855444434321 1111 01122233356
Q ss_pred cceeecccccCCCCCcccccchhhHHHHHHHHHhcccCCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCchhhHHH
Q 028600 101 GVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALID 180 (207)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~~~~~~ 180 (207)
+++++|.+............. .....+.+.+..+ ++||||||||++.+....+ ..++..+|.+|+|+.|+..++..
T Consensus 80 ~l~lip~~~~~~~~~~~~~~~-~~~~~ll~~l~~~--~~yD~IiIDt~~~l~~~a~-~aal~~AD~viIp~~p~~~sl~~ 155 (290)
T CHL00072 80 GVDCVEAGGPPAGAGCGGYVV-GETVKLLKELNAF--YEYDIILFDVLGDVVCGGF-AAPLNYADYCIIITDNGFDALFA 155 (290)
T ss_pred CeEEEeCCCCCCccchhhccc-HHHHHHHHHhhcc--ccCCEEEEecCCcceechh-hhhhhcCCEEEEEecCCHHHHHH
Confidence 889998886543222100000 0111122222222 4799999999877654334 34456799999999999999999
Q ss_pred HHHHHHHhhhC----CCCeeEEEEccccC
Q 028600 181 ARKGITMFSKV----QVPVCSFLAQIISS 205 (207)
Q Consensus 181 ~~~~l~~l~~~----~~~~~g~v~N~~~~ 205 (207)
+.++++.++.. +.+..|+|+|+++.
T Consensus 156 ~~~l~~~i~~~~~~~~l~~~gvv~n~~~~ 184 (290)
T CHL00072 156 ANRIAASVREKARTHPLRLAGLVGNRTSK 184 (290)
T ss_pred HHHHHHHHHHHhccCCCceEEEEEeCCCc
Confidence 99998777654 45678999999863
No 31
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=99.94 E-value=1e-25 Score=177.61 Aligned_cols=170 Identities=21% Similarity=0.168 Sum_probs=109.7
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccccCCccccc----------cccceecccc
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTK----------DMKMVPIENY 100 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~~~~~~~~----------~~~~~~~~~~ 100 (207)
||+|+|+ .|||+||||++.|||++||+ .|+||++||+|++......+++.....++.+ ...+......
T Consensus 1 m~~iav~-~KGGVGKTT~~~nLA~~La~-~G~rVLlID~Dpq~~~t~~l~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~ 78 (274)
T PRK13235 1 MRKVAIY-GKGGIGKSTTTQNTVAGLAE-MGKKVMVVGCDPKADSTRLLLGGLAQKTVLDTLREEGEDVELEDIRKEGYG 78 (274)
T ss_pred CCEEEEe-CCCCccHHHHHHHHHHHHHH-CCCcEEEEecCCcccccccccCCCCCccHHHHHHhcCCCCCHHHHhhcCCC
Confidence 4799999 79999999999999999999 9999999999999977666654332222111 1122233355
Q ss_pred cceeecccccCCCCCcccccchhhHHHHHHHHHhc--ccCCCCEEEEcCCCCCCcchh-hhhhhhcCceEEEeeCCchhh
Q 028600 101 GVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREV--DWGNLDILVIDMPPGTGDAQL-TTTQTLQLSGALIVSTPQDVA 177 (207)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l--~~~~~D~IiiD~~~~~~~~~~-~~~~~~~~d~vi~v~~~~~~~ 177 (207)
+++++|.+...... ....+.......+.+.++.+ . .+||||||||++.+....+ ...++..+|.+++|+.++..+
T Consensus 79 ~l~~ip~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~-~~yD~ilID~~~~~~~~~l~~~~a~~aad~vlIp~~~e~~s 156 (274)
T PRK13235 79 GTRCTESGGPEPGV-GCAGRGIITSVNLLEQLGAYDDE-WNLDYVFYDVLGDVVCGGFAMPIRDGKAEEIYIVCSGEMMA 156 (274)
T ss_pred CCEEEeCCCCCCCC-CCCCCceeehhHHHHhhchhhcc-CCCCEEEEECCCCCccCCcccccccccccEEEEEecCchhH
Confidence 77788765322211 00000000010122222222 3 6799999999865542222 122223689999999999999
Q ss_pred HHHHHHHHHHhhh----CCCCeeEEEEcccc
Q 028600 178 LIDARKGITMFSK----VQVPVCSFLAQIIS 204 (207)
Q Consensus 178 ~~~~~~~l~~l~~----~~~~~~g~v~N~~~ 204 (207)
+..+.++++.+++ .+.++.|+|+|+..
T Consensus 157 l~g~~~ll~~i~~~~~~~~l~i~giv~n~~~ 187 (274)
T PRK13235 157 MYAANNICKGILKYADAGGVRLGGLICNSRK 187 (274)
T ss_pred HHHHHHHHHHHHHHhhcCCCceeEEEEecCC
Confidence 9888888766553 35667799999643
No 32
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=99.94 E-value=1.6e-25 Score=176.18 Aligned_cols=170 Identities=24% Similarity=0.242 Sum_probs=111.5
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccccCCcccc-----------ccccceeccc
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVT-----------KDMKMVPIEN 99 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~~~~~~~-----------~~~~~~~~~~ 99 (207)
||+|+|+ .|||+||||+++|||.+||+ .|+||++||+|++.+...++++.....++. ..........
T Consensus 1 m~~iav~-~KGGvGKTT~~~nLA~~La~-~G~kVlliD~Dpq~n~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 78 (270)
T cd02040 1 MRQIAIY-GKGGIGKSTTTQNLSAALAE-MGKKVMIVGCDPKADSTRLLLGGKAIPTVLDTLREKGEVELELEDVIFEGF 78 (270)
T ss_pred CcEEEEE-eCCcCCHHHHHHHHHHHHHh-CCCeEEEEEcCCCCCchhhhcCCCCCCcHHHHHHhhcccccchhhheeecC
Confidence 5899998 69999999999999999999 999999999999986665554432222211 1111222334
Q ss_pred ccceeecccccCCCCCcccccchhhHHHHHHHHHhcccCCCCEEEEcCCCCCCcchhh-hhhhhcCceEEEeeCCchhhH
Q 028600 100 YGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLT-TTQTLQLSGALIVSTPQDVAL 178 (207)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~D~IiiD~~~~~~~~~~~-~~~~~~~d~vi~v~~~~~~~~ 178 (207)
.+++++|.+........ ..........+.+.++.+. .+||||||||++.+....+. ...+..+|.+++|+.|+..++
T Consensus 79 ~~l~~ip~~~~~~~~~~-~~~~~~~~~~~l~~l~~~~-~~yD~viID~~g~~~~~~~~~~~~~~aaD~vlip~~p~~~sl 156 (270)
T cd02040 79 GGIKCVESGGPEPGVGC-AGRGVITAINLLEELGAYE-DDLDFVIYDVLGDVVCGGFAMPIREGKAQEIYIVTSGEMMAL 156 (270)
T ss_pred CCeEEEeCCCCCCCCCC-cCcchhhHHHHHHhcCccc-cCCCEEEEecccCcccCCcccccccccccEEEEEecCchHHH
Confidence 67888887754432211 1111111112223345566 78999999998755322221 111225899999999999999
Q ss_pred HHHHHHHHHhhhC----CCCeeEEEEcccc
Q 028600 179 IDARKGITMFSKV----QVPVCSFLAQIIS 204 (207)
Q Consensus 179 ~~~~~~l~~l~~~----~~~~~g~v~N~~~ 204 (207)
..+.++++.+.+. +.++.++|.|+..
T Consensus 157 ~~~~~l~~~i~~~~~~~~~~l~gVv~n~~~ 186 (270)
T cd02040 157 YAANNICKGILKYAKSGGVRLGGLICNSRN 186 (270)
T ss_pred HHHHHHHHHHHHhCccCCCceEEEEEecCC
Confidence 8888777665433 5677788888753
No 33
>PRK10037 cell division protein; Provisional
Probab=99.94 E-value=4.1e-26 Score=177.59 Aligned_cols=164 Identities=13% Similarity=0.132 Sum_probs=107.1
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccccCCcc--cc-------ccccceeccccc
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPE--VT-------KDMKMVPIENYG 101 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~~~~~--~~-------~~~~~~~~~~~~ 101 (207)
||+|+|.|.|||+||||++.|||++||+ +|+||++||+|++. +++..+|.+.... +. ...........+
T Consensus 1 ~~~iav~n~KGGvGKTT~a~nLA~~La~-~G~rVLlID~D~q~-~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (250)
T PRK10037 1 MAILGLQGVRGGVGTTSITAALAWSLQM-LGENVLVIDACPDN-LLRLSFNVDFTHRQGWARALLDGQDWRDAGLRYTSQ 78 (250)
T ss_pred CcEEEEecCCCCccHHHHHHHHHHHHHh-cCCcEEEEeCChhh-hHHHHhCCCccccchHHHHHhcCCCchhhhccccCC
Confidence 5799999999999999999999999999 99999999999986 5555666543211 10 011111112357
Q ss_pred ceeecccccCCCCCcccccchhhHHHHHHHHHhccc-CCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCchhhHHH
Q 028600 102 VKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDW-GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALID 180 (207)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~-~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~~~~~~ 180 (207)
++++|++.....+.............+.+.++.++. ..||||||||||+.+ .....++..+|.+++|+.++..+.
T Consensus 79 l~iip~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~yD~iiIDtpp~~~--~~~~~al~aaD~vlvpv~~~~~~~-- 154 (250)
T PRK10037 79 LDLLPFGQLSIEEQENPQHWQTRLGDICSALQQLKASGRYQWILLDLPRGAS--PLTRQLLSLCDHSLAIVNVDANCH-- 154 (250)
T ss_pred eEEEcCCCCCHHHHHHHHHHHHhHHHHHHHHHHhcccCCCCEEEEECCCCcc--HHHHHHHHhCCEEEEEcCcCHHHH--
Confidence 888887632111111000000112346667776642 479999999999887 455677779999999999987652
Q ss_pred HHHHHHHhhhCCCCeeEEEEcccc
Q 028600 181 ARKGITMFSKVQVPVCSFLAQIIS 204 (207)
Q Consensus 181 ~~~~l~~l~~~~~~~~g~v~N~~~ 204 (207)
++..++.....+.+++|+++
T Consensus 155 ----i~~~~~~~~~~~~i~~n~~~ 174 (250)
T PRK10037 155 ----IRLHQQALPAGAHILINDLR 174 (250)
T ss_pred ----HhhhccccCCCeEEEEecCC
Confidence 33333222223467888875
No 34
>PRK13236 nitrogenase reductase; Reviewed
Probab=99.94 E-value=1.9e-25 Score=177.60 Aligned_cols=171 Identities=20% Similarity=0.231 Sum_probs=115.6
Q ss_pred CCCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccccCCcccccc------------cccee
Q 028600 29 GVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKD------------MKMVP 96 (207)
Q Consensus 29 ~~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~~~~~~~~~------------~~~~~ 96 (207)
+++|+|+| ++|||+||||+++|||++||+ .|+||++||+|++.++...+++.....++.+. ..+..
T Consensus 4 ~~~~~~~~-~GKGGVGKTt~a~NLA~~La~-~G~rVLliD~D~q~~~~~~l~~~~~~~tl~d~~~~~~~~~~~~l~~~i~ 81 (296)
T PRK13236 4 ENIRQIAF-YGKGGIGKSTTSQNTLAAMAE-MGQRILIVGCDPKADSTRLMLHSKAQTTVLHLAAERGAVEDLELHEVML 81 (296)
T ss_pred cCceEEEE-ECCCcCCHHHHHHHHHHHHHH-CCCcEEEEEccCCCCccchhccCCCCCCHHHHHHhcCCccCCCHHHhhe
Confidence 45799999 779999999999999999999 99999999999999998888876544333221 12223
Q ss_pred cccccceeecccccCCCCCcccccchhhHHHHHHHHHhcccCCCCEEEEcCCCCCCcchhh-hhhhhcCceEEEeeCCch
Q 028600 97 IENYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLT-TTQTLQLSGALIVSTPQD 175 (207)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~D~IiiD~~~~~~~~~~~-~~~~~~~d~vi~v~~~~~ 175 (207)
....+++++|.+..... ....+......++.+........||||+|||++......+. ...+..+|.+|+|+.|+.
T Consensus 82 ~~~~gv~llpa~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~yD~vliD~~~~~~~~~~~~~~~l~aAD~vIIvttpe~ 158 (296)
T PRK13236 82 TGFRGVKCVESGGPEPG---VGCAGRGIITAINFLEENGAYQDLDFVSYDVLGDVVCGGFAMPIREGKAQEIYIVTSGEM 158 (296)
T ss_pred eCCCCeEEEECCCCCCC---CCCcceeehhhhHHHHhcCccccCCEEEEeccccceeccccccchhccCCEEEEecCcch
Confidence 44568999998743222 11111122223333332211168999999997543221221 111347899999999999
Q ss_pred hhHHHHHHHHH----HhhhCCCCeeEEEEcccc
Q 028600 176 VALIDARKGIT----MFSKVQVPVCSFLAQIIS 204 (207)
Q Consensus 176 ~~~~~~~~~l~----~l~~~~~~~~g~v~N~~~ 204 (207)
.++.++.+.++ ..+..+.++.|+|+|+.+
T Consensus 159 ~sl~g~~~~~~~l~k~~~~~~l~i~gIv~Nr~~ 191 (296)
T PRK13236 159 MAMYAANNIARGILKYAHTGGVRLGGLICNSRN 191 (296)
T ss_pred HHHHHHHHHHHHHHHHhhCCCceeEEEEecCCC
Confidence 99988875444 333446788999999854
No 35
>PHA02518 ParA-like protein; Provisional
Probab=99.94 E-value=1.8e-25 Score=169.67 Aligned_cols=139 Identities=25% Similarity=0.293 Sum_probs=105.0
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccccCCccccccccceecccccceeecccccC
Q 028600 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGFLV 111 (207)
Q Consensus 32 k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (207)
++|+|+|.|||+||||+++|||.+|++ .|++|++||+|++++...|. +...... ..++..
T Consensus 1 ~ii~v~~~KGGvGKTT~a~~la~~la~-~g~~vlliD~D~q~~~~~~~-~~~~~~~---------------~~i~~~--- 60 (211)
T PHA02518 1 KIIAVLNQKGGAGKTTVATNLASWLHA-DGHKVLLVDLDPQGSSTDWA-EAREEGE---------------PLIPVV--- 60 (211)
T ss_pred CEEEEEcCCCCCCHHHHHHHHHHHHHh-CCCeEEEEeCCCCCChHHHH-HhcccCC---------------CCCchh---
Confidence 589999999999999999999999999 99999999999998654443 2211000 011110
Q ss_pred CCCCcccccchhhHHHHHHHHHhcccCCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCchhhHHHHHHHHHHhhhC
Q 028600 112 PSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKV 191 (207)
Q Consensus 112 ~~~~~~~~~~~~~~~~l~~~~~~l~~~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~~~~~~~~~~l~~l~~~ 191 (207)
. ....+.+.+..+. ..||||||||||+.+ .....++..+|.+|+|+.|+..++..+.++++.++..
T Consensus 61 ---~--------~~~~~~~~l~~~~-~~~d~viiD~p~~~~--~~~~~~l~~aD~viip~~ps~~~~~~~~~~~~~~~~~ 126 (211)
T PHA02518 61 ---R--------MGKSIRADLPKVA-SGYDYVVVDGAPQDS--ELARAALRIADMVLIPVQPSPFDIWAAPDLVELIKAR 126 (211)
T ss_pred ---h--------ccHHHHHHHHHHh-ccCCEEEEeCCCCcc--HHHHHHHHHCCEEEEEeCCChhhHHHHHHHHHHHHHH
Confidence 0 0124556666677 899999999999877 4556777799999999999999988888877766542
Q ss_pred -----CCCeeEEEEcccc
Q 028600 192 -----QVPVCSFLAQIIS 204 (207)
Q Consensus 192 -----~~~~~g~v~N~~~ 204 (207)
+.+..++|.|+++
T Consensus 127 ~~~~~~~~~~~iv~n~~~ 144 (211)
T PHA02518 127 QEVTDGLPKFAFIISRAI 144 (211)
T ss_pred HhhCCCCceEEEEEeccC
Confidence 4667788999875
No 36
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=99.93 E-value=4.4e-25 Score=163.60 Aligned_cols=153 Identities=27% Similarity=0.396 Sum_probs=108.5
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccccCCccccccccceecccccceeecccccCC
Q 028600 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGFLVP 112 (207)
Q Consensus 33 ~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (207)
.|+|+|+|||+||||+++|||.++ +||++||+|++.++++.+|+.+....................+.+.+..
T Consensus 1 ~I~v~s~kgG~GKSt~a~nLA~~l-----~~vlliD~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 73 (179)
T cd03110 1 QIAVISGKGGTGKTTVTAALAALL-----KNVVLADCDVDAPNLHLFLKPEIEEEEDFIVGGKKAVIDPELCISCGLC-- 73 (179)
T ss_pred CEEEEcCCCCCCHHHHHHHHHHHH-----hCcEEEECCCCCCchhhhcCCCccccccceecCCceEEchhhhccccch--
Confidence 389999999999999999999999 5999999999999999999987644321110000000001111111100
Q ss_pred CCCcccccchhhHHHHHHHHHh--cccCCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCchhhHHHHHHHHHHhhh
Q 028600 113 SSSPVVWRGPMVMSALRKMSRE--VDWGNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSK 190 (207)
Q Consensus 113 ~~~~~~~~~~~~~~~l~~~~~~--l~~~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~~~~~~~~~~l~~l~~ 190 (207)
......+.+.+.. .. ..|||||+|+||++++ .....+..+|.+++|+.++..++..+.+.++.+++
T Consensus 74 ---------~~~~~~~~~~~~~~~~~-~~~d~viiDtpp~~~~--~~~~~l~~aD~vliv~~~~~~~~~~~~~~~~~l~~ 141 (179)
T cd03110 74 ---------GKLVTEVRKHAKEIAKA-EGAELIIIDGPPGIGC--PVIASLTGADAALLVTEPTPSGLHDLERAVELVRH 141 (179)
T ss_pred ---------HHHHHHHHHHHHHhhhh-cCCCEEEEECcCCCcH--HHHHHHHcCCEEEEEecCCcccHHHHHHHHHHHHH
Confidence 0111223333221 13 7899999999998875 34556678999999999999999999999999998
Q ss_pred CCCCeeEEEEccccC
Q 028600 191 VQVPVCSFLAQIISS 205 (207)
Q Consensus 191 ~~~~~~g~v~N~~~~ 205 (207)
.+.+. ++|+|+++.
T Consensus 142 ~~~~~-~vV~N~~~~ 155 (179)
T cd03110 142 FGIPV-GVVINKYDL 155 (179)
T ss_pred cCCCE-EEEEeCCCC
Confidence 88775 899999875
No 37
>PRK13234 nifH nitrogenase reductase; Reviewed
Probab=99.93 E-value=3.4e-25 Score=175.99 Aligned_cols=166 Identities=21% Similarity=0.200 Sum_probs=114.4
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccccCCccccc------------cccceecc
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTK------------DMKMVPIE 98 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~~~~~~~~------------~~~~~~~~ 98 (207)
+|+|+|. +|||+||||+++|||++||+ .|+||++||+|++.++...+++.....++.+ ........
T Consensus 4 ~~~iai~-~KGGvGKTt~~~nLa~~la~-~g~kVLliD~D~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 81 (295)
T PRK13234 4 LRQIAFY-GKGGIGKSTTSQNTLAALVE-MGQKILIVGCDPKADSTRLILNAKAQDTVLSLAAEAGSVEDLELEDVMKIG 81 (295)
T ss_pred ceEEEEE-CCCCccHHHHHHHHHHHHHH-CCCeEEEEecccccccccccccCCCCCcHHHHHHhcCCcccccHHHHheec
Confidence 7999996 99999999999999999999 9999999999999988765555433222211 11223344
Q ss_pred cccceeecccccCCCCCcccccchhhHHHHH-HHHHhc--ccCCCCEEEEcCCCCCCcchhhhhhh--hcCceEEEeeCC
Q 028600 99 NYGVKCMSMGFLVPSSSPVVWRGPMVMSALR-KMSREV--DWGNLDILVIDMPPGTGDAQLTTTQT--LQLSGALIVSTP 173 (207)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~l--~~~~~D~IiiD~~~~~~~~~~~~~~~--~~~d~vi~v~~~ 173 (207)
..+++++|.+...... ...+ ....++ +.++.+ . .+||||||||++.+....+ ...+ ..+|.+|+|+.+
T Consensus 82 ~~gl~lipa~~~~~~~---~~~~--~~~~l~~~~l~~~~~~-~~yD~IlID~~~~~~~nal-~~~~~~~aAD~vIIPv~p 154 (295)
T PRK13234 82 YKGIKCVESGGPEPGV---GCAG--RGVITSINFLEENGAY-DDVDYVSYDVLGDVVCGGF-AMPIRENKAQEIYIVMSG 154 (295)
T ss_pred CCCeEEEECCCCCCCC---CCCc--ceeeeHHHHHHHcCCC-ccCCEEEEEcCCCceECCC-ccccccccCceEEEecCc
Confidence 5789999886533321 0111 112222 244443 3 6899999999754432222 1111 269999999999
Q ss_pred chhhHHHHHHHHHHhhhC----CCCeeEEEEccccC
Q 028600 174 QDVALIDARKGITMFSKV----QVPVCSFLAQIISS 205 (207)
Q Consensus 174 ~~~~~~~~~~~l~~l~~~----~~~~~g~v~N~~~~ 205 (207)
+..++..+.++++.+++. +.+..|+|+|+.++
T Consensus 155 e~~Sl~gl~~l~~~i~~~~~~~~l~~~gIV~N~~rt 190 (295)
T PRK13234 155 EMMALYAANNIAKGILKYANSGGVRLGGLICNERQT 190 (295)
T ss_pred cHHHHHHHHHHHHHHHHHhcCCCCeEEEEEecCCCC
Confidence 999999999888777653 46688999997653
No 38
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=99.93 E-value=6.1e-25 Score=168.38 Aligned_cols=145 Identities=20% Similarity=0.228 Sum_probs=103.6
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccccCCccccccccceecccccceeeccccc
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGFL 110 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (207)
|++|+|.|.|||+||||++.|||.++++ .|++|++||+|++++.. .+++....... .+ .. +..
T Consensus 1 M~iI~v~n~KGGvGKTT~a~nLA~~la~-~G~~VlliD~DpQ~s~~-~w~~~~~~~~~------~~----~~----~~~- 63 (231)
T PRK13849 1 MKLLTFCSFKGGAGKTTALMGLCAALAS-DGKRVALFEADENRPLT-RWKENALRSNT------WD----PA----CEV- 63 (231)
T ss_pred CeEEEEECCCCCccHHHHHHHHHHHHHh-CCCcEEEEeCCCCCCHH-HHHHhhccccC------CC----cc----cee-
Confidence 5899999999999999999999999999 99999999999988543 33332211100 00 00 000
Q ss_pred CCCCCcccccchhhHHHHHHHHHhcccCCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCchhhHHHHHHHHHHhhh
Q 028600 111 VPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSK 190 (207)
Q Consensus 111 ~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~~~~~~~~~~l~~l~~ 190 (207)
. .......+++.++.+..+.||||||||||..+ .....++..+|.+|+|+.|+..++..+.+.++.+.+
T Consensus 64 -~--------~~~~~~~l~~~l~~~~~~~yD~iiID~pp~~~--~~~~~al~~aD~vliP~~ps~~d~~~~~~~~~~v~~ 132 (231)
T PRK13849 64 -Y--------AADELPLLEAAYEDAELQGFDYALADTHGGSS--ELNNTIIASSNLLLIPTMLTPLDIDEALSTYRYVIE 132 (231)
T ss_pred -c--------CCCHHHHHHHHHHHHhhCCCCEEEEeCCCCcc--HHHHHHHHHCCEEEEeccCcHHHHHHHHHHHHHHHH
Confidence 0 00112345666666532579999999999887 455666778999999999999999888888766543
Q ss_pred ------CCCCeeEEEEcccc
Q 028600 191 ------VQVPVCSFLAQIIS 204 (207)
Q Consensus 191 ------~~~~~~g~v~N~~~ 204 (207)
.+.+. .+++|+++
T Consensus 133 ~~~~~~~~l~~-~iv~~~~~ 151 (231)
T PRK13849 133 LLLSENLAIPT-AILRQRVP 151 (231)
T ss_pred HHHHhCCCCCe-EEEEEecc
Confidence 24444 59999985
No 39
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=99.93 E-value=8e-25 Score=172.69 Aligned_cols=169 Identities=23% Similarity=0.250 Sum_probs=110.7
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccccCCccccc-----------cccceecccc
Q 028600 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTK-----------DMKMVPIENY 100 (207)
Q Consensus 32 k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~~~~~~~~-----------~~~~~~~~~~ 100 (207)
++|+|+ +|||+||||+|.|||.+||+ .|+||++||+|++.+....+++.....++.+ ..........
T Consensus 1 ~~ia~~-gKGGVGKTT~a~nLA~~La~-~G~~VlliD~D~q~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~ 78 (275)
T TIGR01287 1 RQIAIY-GKGGIGKSTTTQNIAAALAE-MGKKVMIVGCDPKADSTRLLLGGKAQPTVLDVLREKGAEDLELEDVIKEGFG 78 (275)
T ss_pred CeeEEe-CCCcCcHHHHHHHHHHHHHH-CCCeEEEEeCCCCCCccccccCCCCCCCHHHHHhhcCCCCCCHHHeeeeCCC
Confidence 579997 59999999999999999999 9999999999999876555544333322211 1122233456
Q ss_pred cceeecccccCCCCCcccccchhhHHHHHHHHHhcccCCCCEEEEcCCCCCCcchh-hhhhhhcCceEEEeeCCchhhHH
Q 028600 101 GVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQL-TTTQTLQLSGALIVSTPQDVALI 179 (207)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~D~IiiD~~~~~~~~~~-~~~~~~~~d~vi~v~~~~~~~~~ 179 (207)
++++++++...+... ...........+.+.+..+. ++||||||||++......+ ....+..+|.+|+|++++..++.
T Consensus 79 ~l~~i~~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~-~~yD~iiIDt~~~~~~~~~~~~~~~~aAD~viip~~p~~~sl~ 156 (275)
T TIGR01287 79 GIRCVESGGPEPGVG-CAGRGVITAINLLEELGAYE-DDLDFVFYDVLGDVVCGGFAMPIREGKAQEIYIVTSGEMMALY 156 (275)
T ss_pred CEEEEeCCCCCccCC-CccchhhhHHHHHHHhhhhh-ccCCEEEEeccCcceecceeeccccccccEEEEEecchHHHHH
Confidence 788888765443211 11111111111223355566 7999999999865432122 11122368999999999999999
Q ss_pred HHHHHHHHhhh----CCCCeeEEEEcccc
Q 028600 180 DARKGITMFSK----VQVPVCSFLAQIIS 204 (207)
Q Consensus 180 ~~~~~l~~l~~----~~~~~~g~v~N~~~ 204 (207)
.+.++++.+.+ .+.++.++|.|+.+
T Consensus 157 ~~~~l~~~i~~~~~~~~~~~~giv~n~~~ 185 (275)
T TIGR01287 157 AANNICKGILKYAKSGGVRLGGLICNSRN 185 (275)
T ss_pred HHHHHHHHHHHHHhcCCCeeeEEEEcCCC
Confidence 98887665432 35667788888743
No 40
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=99.93 E-value=1e-24 Score=161.41 Aligned_cols=126 Identities=33% Similarity=0.472 Sum_probs=102.7
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccccCCccccccccceecccccceeecccccCC
Q 028600 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGFLVP 112 (207)
Q Consensus 33 ~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (207)
+|+|+|.|||+||||++.|||.++++ +|++|++||+|++.+++.++++.+.....
T Consensus 1 ~i~v~~~kgG~GKtt~a~~la~~l~~-~g~~vllvD~D~~~~~~~~~~~~~~~~~~------------------------ 55 (179)
T cd02036 1 VIVVTSGKGGVGKTTTTANLGTALAQ-LGYKVVLIDADLGLRNLDLILGLENRVVY------------------------ 55 (179)
T ss_pred CEEEeeCCCCCCHHHHHHHHHHHHHh-CCCeEEEEeCCCCCCCchhhccccccCCc------------------------
Confidence 58999999999999999999999999 99999999999998888777654321100
Q ss_pred CCCcccccchhhHHHHHHHHHhcccCCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCchhhHHHHHHHHHHhhhCC
Q 028600 113 SSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQ 192 (207)
Q Consensus 113 ~~~~~~~~~~~~~~~l~~~~~~l~~~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~~~~~~~~~~l~~l~~~~ 192 (207)
.+.+. +. . ||||||+||+.+. .....+..+|.+|+|+.++..++..+.++++.+++.+
T Consensus 56 --------------~~~~~---~~-~--d~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~~~~~~ 113 (179)
T cd02036 56 --------------TLHDV---LA-G--DYILIDSPAGIER--GFITAIAPADEALLVTTPEISSLRDADRVKGLLEALG 113 (179)
T ss_pred --------------chhhc---cc-C--CEEEEECCCCCcH--HHHHHHHhCCcEEEEeCCCcchHHHHHHHHHHHHHcC
Confidence 00011 11 1 9999999998774 3456667899999999999999999999999999888
Q ss_pred CCeeEEEEccccC
Q 028600 193 VPVCSFLAQIISS 205 (207)
Q Consensus 193 ~~~~g~v~N~~~~ 205 (207)
.+..++|+|+++.
T Consensus 114 ~~~~~iv~N~~~~ 126 (179)
T cd02036 114 IKVVGVIVNRVRP 126 (179)
T ss_pred CceEEEEEeCCcc
Confidence 8889999999874
No 41
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=99.93 E-value=6.2e-25 Score=172.33 Aligned_cols=168 Identities=20% Similarity=0.236 Sum_probs=114.1
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccccCCcccc---------ccccceeccccc
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVT---------KDMKMVPIENYG 101 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~~~~~~~---------~~~~~~~~~~~~ 101 (207)
||+|+|. .|||+||||+++|||++||+ .| ||++||+|++......+++... .++. ...........+
T Consensus 2 ~~~iav~-~KGGvGKTT~a~nLA~~La~-~G-rVLliD~Dpq~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (264)
T PRK13231 2 MKKIAIY-GKGGIGKSTTVSNMAAAYSN-DH-RVLVIGCDPKADTTRTLCGKRI-PTVLDTLKDNRKPELEDIIHEGFNG 77 (264)
T ss_pred ceEEEEE-CCCCCcHHHHHHHHhcccCC-CC-EEEEEeEccCcccchhhhcCCc-cHHHHHHhhcCCCChhHhheeCCCC
Confidence 6899999 69999999999999999999 99 9999999999865544444322 1111 111222333557
Q ss_pred ceeecccccCCCCCcccccchhhHHHHHHHHHhcccCCCCEEEEcCCCCCCcchhh-hhhhhcCceEEEeeCCchhhHHH
Q 028600 102 VKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLT-TTQTLQLSGALIVSTPQDVALID 180 (207)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~D~IiiD~~~~~~~~~~~-~~~~~~~d~vi~v~~~~~~~~~~ 180 (207)
+.++|.+...... ............+.+.++.++ ++||||||||++.+....+. ......+|.+++|+.|+..++..
T Consensus 78 l~~i~~~~~~~~~-~~~~~~~~~~~~~~~~l~~l~-~~yD~ViIDt~~~~~~~~~~~~~~~~aaD~vlip~~p~~~si~~ 155 (264)
T PRK13231 78 ILCVESGGPEPGV-GCAGRGVIVAMNLLENLGVFD-EDIDVVIYDVLGDVVCGGFSVPLREDYADEVYIVTSGEYMSLYA 155 (264)
T ss_pred eEEEEcCCCCCCC-CCcCceeeehhhhHHhhcccc-CCCCEEEEecCCCceEccccccccccccceeEEEecCchhHHHH
Confidence 7788776432211 100111111123455666777 89999999998754321221 11113789999999999999999
Q ss_pred HHHHHHHhhhCCCCeeEEEEcccc
Q 028600 181 ARKGITMFSKVQVPVCSFLAQIIS 204 (207)
Q Consensus 181 ~~~~l~~l~~~~~~~~g~v~N~~~ 204 (207)
+.++++.++..+....++|.|+.+
T Consensus 156 ~~~~~~~i~~~~~~~~~vv~~~~~ 179 (264)
T PRK13231 156 ANNIARGIKKLKGKLGGIICNCRG 179 (264)
T ss_pred HHHHHHHHHHcCCcceEEEEcCCC
Confidence 999999998877677788888765
No 42
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=99.92 E-value=1.6e-24 Score=171.20 Aligned_cols=167 Identities=21% Similarity=0.191 Sum_probs=105.6
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccccCCccccc-----------cccceeccc
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTK-----------DMKMVPIEN 99 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~~~~~~~~-----------~~~~~~~~~ 99 (207)
|++|+|+ +|||+||||++.|||.+||+ .|+||++||+|++++...++.+. ...++.+ ...+.....
T Consensus 1 ~~~i~~~-gKGGVGKTT~a~nLA~~La~-~G~rVLliD~Dpq~n~t~~l~~~-~~~~l~d~~~~~~~~~~~~~~~i~~~~ 77 (279)
T PRK13230 1 MRKFCFY-GKGGIGKSTTVCNIAAALAE-SGKKVLVVGCDPKADCTRNLVGE-KIPTVLDVLREKGIDNLGLEDIIYEGF 77 (279)
T ss_pred CcEEEEE-CCCCCcHHHHHHHHHHHHHh-CCCEEEEEeeCCcccccccccCc-cCCCHHHHHHhcCCCCCCHHHheeeCC
Confidence 6899998 69999999999999999999 99999999999998655544332 1111111 111222335
Q ss_pred ccceeecccccCCCCCcccccchhhHHHHHHHHHhcccCCCCEEEEcCCCCCCcchh-hhhhhhcCceEEEeeCCchhhH
Q 028600 100 YGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQL-TTTQTLQLSGALIVSTPQDVAL 178 (207)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~D~IiiD~~~~~~~~~~-~~~~~~~~d~vi~v~~~~~~~~ 178 (207)
.+++++|.+........ ..........+.+.+..+.+.+||||||||++.+....+ ....+..+|.+|+|+.|+..++
T Consensus 78 ~~l~lipa~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~yD~viID~~~~~~~~~l~~~~~~~aAD~vlIp~~p~~~si 156 (279)
T PRK13230 78 NGIYCVESGGPEPGYGC-AGRGVITAIDLLKKLGVFEELGPDVVIYDILGDVVCGGFAMPLQKGLADDVYIVTTCDPMAI 156 (279)
T ss_pred CCcEEEECCCCCCCCCc-CCcchhhHHHHHHHcCcccccCCCEEEEecCCccccCCccccccccccceEEEeccchHHHH
Confidence 68889987754322100 000000111122223233314799999999865432121 1122335899999999999999
Q ss_pred HHHHHHHHHhhhC----CCCeeEEEEc
Q 028600 179 IDARKGITMFSKV----QVPVCSFLAQ 201 (207)
Q Consensus 179 ~~~~~~l~~l~~~----~~~~~g~v~N 201 (207)
..+.++++.+.+. +..+.|++.|
T Consensus 157 ~~~~~ll~~i~~~~~~~~~~i~gIv~n 183 (279)
T PRK13230 157 YAANNICKGIKRFAKRGKSALGGIIYN 183 (279)
T ss_pred HHHHHHHHHHHHHhhcCCCcceEEEEe
Confidence 9998777665433 5556677755
No 43
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=99.92 E-value=3.8e-25 Score=165.84 Aligned_cols=156 Identities=24% Similarity=0.347 Sum_probs=112.1
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccccC--CccccccccceecccccceeecccccC
Q 028600 34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQ--KPEVTKDMKMVPIENYGVKCMSMGFLV 111 (207)
Q Consensus 34 I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (207)
|+|+|.|||+||||+|++||.++++ +|++|++||+|++.+....+++... .......... ..++. .....
T Consensus 1 I~v~~~kGG~GKTt~a~~la~~la~-~g~~VlliD~D~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~---~~~~~ 72 (195)
T PF01656_consen 1 IAVTSGKGGVGKTTIAANLAQALAR-KGKKVLLIDLDPQAPNLSILFGVYDILREGLENANAI----LKNFE---SQDIY 72 (195)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHH-TTS-EEEEEESTTSHHHHHHTTCHHHHTTSSHGHHCH----HESCC---HHHHH
T ss_pred CEEEcCCCCccHHHHHHHHHhcccc-ccccccccccCcccccHHHHhcchhhccccceehhhh----hhccc---hhhhh
Confidence 7899999999999999999999999 9999999999999988777765400 0000000000 00000 00000
Q ss_pred CCCCcccccchhhHHHHHHHHHhcccCCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCchhhHHHHHHHHHHhhhC
Q 028600 112 PSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKV 191 (207)
Q Consensus 112 ~~~~~~~~~~~~~~~~l~~~~~~l~~~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~~~~~~~~~~l~~l~~~ 191 (207)
. .. .. .....++++++.+....|||||||+||+++.. ....+..+|.+|+|+.++..++..+..+++.+++.
T Consensus 73 ~-~~----~~-~~~~~l~~~l~~l~~~~yD~iiiD~~~~~~~~--~~~~l~~ad~viv~~~~~~~~i~~~~~~~~~l~~~ 144 (195)
T PF01656_consen 73 Q-GE----EY-LDPELLREILESLIKSDYDYIIIDTPPGLSDP--VRNALAAADYVIVPIEPDPSSIEGAERLIELLKRL 144 (195)
T ss_dssp H-HC----HC-HHHHHHHHHHHHHHHTTSSEEEEEECSSSSHH--HHHHHHTSSEEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred h-hh----hh-hHHHHHHHHHHHhhhccccceeecccccccHH--HHHHHHhCceeeeecCCcHHHHHHHHHHHHHHHHh
Confidence 0 00 00 23567888888865245999999999988854 45566689999999999999999999999999988
Q ss_pred C--CCeeEEEEccccC
Q 028600 192 Q--VPVCSFLAQIISS 205 (207)
Q Consensus 192 ~--~~~~g~v~N~~~~ 205 (207)
+ .+.+++|+|+++.
T Consensus 145 ~~~~~~~~vv~N~v~~ 160 (195)
T PF01656_consen 145 GKKLKIIGVVINRVDP 160 (195)
T ss_dssp THTEEEEEEEEEEETS
T ss_pred ccccceEEEEEeeeCC
Confidence 7 4578999999964
No 44
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=99.92 E-value=2e-24 Score=164.46 Aligned_cols=165 Identities=23% Similarity=0.242 Sum_probs=118.6
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccccCC--ccccc-------cccceeccccc
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQK--PEVTK-------DMKMVPIENYG 101 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~~~--~~~~~-------~~~~~~~~~~~ 101 (207)
||+|+|.|.|||+||||+++|||.+|++ .|++|++||+|+++ .+...||.+.. .++.. +....-....+
T Consensus 1 M~~iai~s~kGGvG~TTltAnLA~aL~~-~G~~VlaID~dpqN-~Lrlhfg~~~~~~~G~a~a~l~~~~W~~~~~~~~~g 78 (243)
T PF06564_consen 1 MKVIAIVSPKGGVGKTTLTANLAWALAR-LGESVLAIDLDPQN-LLRLHFGLPLDDRDGWARALLDGADWQQAAYRYSDG 78 (243)
T ss_pred CcEEEEecCCCCCCHHHHHHHHHHHHHH-CCCcEEEEeCCcHH-HHHHhcCCCCcccccHHHHHhCCCCHHHHhhccCCC
Confidence 6899999999999999999999999999 99999999999987 88888887753 22221 11122234568
Q ss_pred ceeecccccCCCCCcccccchhhHHHHHHHHHhcc-cCCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCchhhHHH
Q 028600 102 VKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVD-WGNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALID 180 (207)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~-~~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~~~~~~ 180 (207)
+.++|.|.....+......-......+.+.+..++ ...||+||+|+|++.+ ......+..+|.+++|+.|+..+...
T Consensus 79 ~~~LPfG~l~~~~~~~~~~l~~~~~~l~~~l~~l~~~~~~~~iliD~P~g~~--~~~~~al~~aD~vL~V~~~Da~s~~~ 156 (243)
T PF06564_consen 79 VDFLPFGQLTEAEREAFEQLAQDPQWLARALAALKALGPYDWILIDTPPGPS--PYTRQALAAADLVLVVVNPDAASHAR 156 (243)
T ss_pred CEEEcCCCCCHHHHHHHHHhhcCHHHHHHHHHHHhccCCCCEEEEeCCCCCc--HHHHHHHHhCCeEEEEeCCCHHHHHH
Confidence 99999986554443211111122455666666665 3789999999999776 55567777899999999999977544
Q ss_pred HHHHHHHhhhCCCCeeEEEEccccC
Q 028600 181 ARKGITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 181 ~~~~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
+.+ ..+ .. -..+|+|+++.
T Consensus 157 L~q--~~l---~~-~~~~liNq~~~ 175 (243)
T PF06564_consen 157 LHQ--RAL---PA-GHRFLINQYDP 175 (243)
T ss_pred HHH--hcc---cC-CcEEEEeccCc
Confidence 433 111 11 23789999984
No 45
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=99.91 E-value=3.9e-23 Score=155.19 Aligned_cols=145 Identities=23% Similarity=0.327 Sum_probs=108.0
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccccCCccccccccceecccccceeeccccc
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGFL 110 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (207)
|++|+|+|.|||+||||.+..||..|++ +|.+|++||+|++.|...|.-.......+.+...+..
T Consensus 1 M~vItf~s~KGGaGKTT~~~~LAs~la~-~G~~V~lIDaDpn~pl~~W~~~a~~~~~~~~~~~V~~-------------- 65 (231)
T PF07015_consen 1 MPVITFASSKGGAGKTTAAMALASELAA-RGARVALIDADPNQPLAKWAENAQRPGAWPDRIEVYE-------------- 65 (231)
T ss_pred CCeEEEecCCCCCcHHHHHHHHHHHHHH-CCCeEEEEeCCCCCcHHHHHHhccccCCCCCCeeEEe--------------
Confidence 6899999999999999999999999999 9999999999999988766433322222221111111
Q ss_pred CCCCCcccccchhhHHHHHHHHHhcccCCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCchhhHHHHHHHHHHhhh
Q 028600 111 VPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSK 190 (207)
Q Consensus 111 ~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~~~~~~~~~~l~~l~~ 190 (207)
......+++.++......|||||||+.++.+ .+.-.++..+|.|++|+.++......+.+.++++.+
T Consensus 66 -----------~~e~~~l~~~~e~a~~~~~d~VlvDleG~as--~~~~~aia~sDlVlIP~~~s~lD~~eA~~t~~~v~~ 132 (231)
T PF07015_consen 66 -----------ADELTILEDAYEAAEASGFDFVLVDLEGGAS--ELNDYAIARSDLVLIPMQPSQLDADEAAKTFKWVRR 132 (231)
T ss_pred -----------ccchhhHHHHHHHHHhcCCCEEEEeCCCCCc--hhHHHHHHHCCEEEECCCCChHHHHHHHHHHHHHHH
Confidence 1123456777776542569999999997666 444555668999999999999988888888877764
Q ss_pred C------CCCeeEEEEcccc
Q 028600 191 V------QVPVCSFLAQIIS 204 (207)
Q Consensus 191 ~------~~~~~g~v~N~~~ 204 (207)
. .++. .+++||++
T Consensus 133 ~~~~~~~~ip~-~Vl~Tr~~ 151 (231)
T PF07015_consen 133 LEKAERRDIPA-AVLFTRVP 151 (231)
T ss_pred HHHhhCCCCCe-eEEEecCC
Confidence 4 4455 79999876
No 46
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=99.91 E-value=6e-23 Score=162.92 Aligned_cols=171 Identities=18% Similarity=0.136 Sum_probs=101.2
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccccCCccccccccc-------eecccccc-e
Q 028600 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKM-------VPIENYGV-K 103 (207)
Q Consensus 32 k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~~~~~~~~~~~~-------~~~~~~~~-~ 103 (207)
|+|+|+ +|||+||||+|+|||++||+ +|+||++||+|++.++...+++.....++.+.-.- ........ .
T Consensus 1 ~vIav~-gKGGvGKTT~a~nLA~~La~-~g~rVLlID~Dpq~~~~~~l~g~~~~~~l~dv~~~~~~~~~~~~~~~vi~~~ 78 (296)
T TIGR02016 1 RIIAIY-GKGGSGKSFTTTNLSHMMAE-MGKRVLQLGCDPKHDSTSLLFGGISLPTIIEVATEKKLAGEEVKVGDVCFKT 78 (296)
T ss_pred CEEEEE-CCCCCCHHHHHHHHHHHHHH-CCCeEEEEEecCCCCccchhccCCCCCCHHHHHHhhccccCCCCHHHheeec
Confidence 589998 89999999999999999999 99999999999999888877663322233221000 00000000 0
Q ss_pred eecccccCCCCCc-------ccccch--hhHHHHHHHHHhcccCCCCEEEEcCCCCCCcc-hhhhhhhhcCceEEEeeCC
Q 028600 104 CMSMGFLVPSSSP-------VVWRGP--MVMSALRKMSREVDWGNLDILVIDMPPGTGDA-QLTTTQTLQLSGALIVSTP 173 (207)
Q Consensus 104 ~~~~~~~~~~~~~-------~~~~~~--~~~~~l~~~~~~l~~~~~D~IiiD~~~~~~~~-~~~~~~~~~~d~vi~v~~~ 173 (207)
.++.+.......+ ..+... .....+.+.+..+. .+||||||||++.+.+. ......+..+|.+|+|+.+
T Consensus 79 ~~~~~~~~~~~~e~~~~~~~~gc~~~~~~~~~~~l~~l~~~~-~~yD~IliD~~~~~~~~g~~~~~a~~~Ad~viVvt~~ 157 (296)
T TIGR02016 79 TIMNGSGGVYGMELGGPEVGRGCGGRGIIHGFDLLEKLGFHD-WDFDFVLMDFLGDVVCGGFATPLARSLAEEVIVIGSN 157 (296)
T ss_pred cccCcCCCcceeecCCCCcccccCcchhhHHHHHHHHhhhhc-ccCCEEEEecCCCccccccccchhhhhCCeEEEEecc
Confidence 0111100000000 000000 11112222233344 68999999997644110 1112223479999999999
Q ss_pred chhhHHHHHHH---HHHhhhCC--CCeeEEEEccccC
Q 028600 174 QDVALIDARKG---ITMFSKVQ--VPVCSFLAQIISS 205 (207)
Q Consensus 174 ~~~~~~~~~~~---l~~l~~~~--~~~~g~v~N~~~~ 205 (207)
+..++..+..+ ++.+++.+ .+++|+|+|+++.
T Consensus 158 e~~sl~~a~~l~k~v~~~~~~~~~v~i~GVV~N~~~~ 194 (296)
T TIGR02016 158 DRQSLYVANNICNAVEYFRKLGGRVGLLGLVVNRDDG 194 (296)
T ss_pred hHHHHHHHHHHHHHHHHHHHcCCCCcceEEEEeCCCC
Confidence 99887665544 55555653 6689999999863
No 47
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=99.90 E-value=8.3e-23 Score=138.50 Aligned_cols=102 Identities=26% Similarity=0.335 Sum_probs=91.6
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHhC-CCeEEEEecCCCCCCccccccccCCccccccccceecccccceeecccccC
Q 028600 33 VIAVASGKGGVGKSTTAVNLAVALASKC-QLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGFLV 111 (207)
Q Consensus 33 ~I~v~s~kgG~GkTt~a~~LA~~la~~~-g~~VlliD~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (207)
+|+++|.|||+||||++.+||.++++ . |++|+++|+|++.+.
T Consensus 1 ~i~~~~~kgg~gkt~~~~~la~~~~~-~~~~~~~l~d~d~~~~~------------------------------------ 43 (106)
T cd03111 1 VIAFIGAKGGVGATTLAANLAVALAK-EAGRRVLLVDLDLQFGD------------------------------------ 43 (106)
T ss_pred CEEEECCCCCCcHHHHHHHHHHHHHh-cCCCcEEEEECCCCCCC------------------------------------
Confidence 58899999999999999999999999 7 999999999998743
Q ss_pred CCCCcccccchhhHHHHHHHHHhcccCCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCchhhHHHHHHHHHHhhhC
Q 028600 112 PSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKV 191 (207)
Q Consensus 112 ~~~~~~~~~~~~~~~~l~~~~~~l~~~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~~~~~~~~~~l~~l~~~ 191 (207)
||||+|+||+++. .....+..+|.+++|++++..++..+.++++.+++.
T Consensus 44 -----------------------------D~IIiDtpp~~~~--~~~~~l~~aD~vlvvv~~~~~s~~~~~~~~~~l~~~ 92 (106)
T cd03111 44 -----------------------------DYVVVDLGRSLDE--VSLAALDQADRVFLVTQQDLPSIRNAKRLLELLRVL 92 (106)
T ss_pred -----------------------------CEEEEeCCCCcCH--HHHHHHHHcCeEEEEecCChHHHHHHHHHHHHHHHc
Confidence 9999999998874 445667789999999999999999999999999887
Q ss_pred CCC---eeEEEEcc
Q 028600 192 QVP---VCSFLAQI 202 (207)
Q Consensus 192 ~~~---~~g~v~N~ 202 (207)
+.+ .+.+|+||
T Consensus 93 ~~~~~~~~~lVvNr 106 (106)
T cd03111 93 DYSLPAKIELVLNR 106 (106)
T ss_pred CCCCcCceEEEecC
Confidence 654 67899997
No 48
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=99.90 E-value=1.6e-22 Score=150.52 Aligned_cols=166 Identities=20% Similarity=0.280 Sum_probs=126.0
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccccCC-cccccccc------------------
Q 028600 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQK-PEVTKDMK------------------ 93 (207)
Q Consensus 33 ~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~~~-~~~~~~~~------------------ 93 (207)
.|+| ++|||+||||+|+.||..+.++.|++|++||+|+ +.+++..+|.+.. ..+.....
T Consensus 2 kIaI-~GKGG~GKTtiaalll~~l~~~~~~~VLvVDaDp-d~nL~~~LGve~~~~~lg~~~e~~~k~~~a~~~~~~~~~f 79 (255)
T COG3640 2 KIAI-TGKGGVGKTTIAALLLKRLLSKGGYNVLVVDADP-DSNLPEALGVEEPMKYLGGKRELLKKRTGAEPGGPPGEMF 79 (255)
T ss_pred eEEE-ecCCCccHHHHHHHHHHHHHhcCCceEEEEeCCC-CCChHHhcCCCCCCcccccHHHHHHHHhccCCCCCccccc
Confidence 5788 5999999999999988888884559999999999 7799999998762 22221100
Q ss_pred -----------ceecccccceeecccccCCCCCcccccchhhHHHHHHHHHhcccCCCCEEEEcCCCCCCcchhhhhhhh
Q 028600 94 -----------MVPIENYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQTL 162 (207)
Q Consensus 94 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~D~IiiD~~~~~~~~~~~~~~~~ 162 (207)
-.-....+++++..|..........++ ....++++++.+..+.||+||+||-+++. .+..-...
T Consensus 80 k~~~~~~di~~e~~~e~~~~~LLvmGkie~~GeGC~Cp---~~allR~~l~~l~~~~~e~VivDtEAGiE--HfgRg~~~ 154 (255)
T COG3640 80 KENPLVSDLPDEYLVENGDIDLLVMGKIEEGGEGCACP---MNALLRRLLRHLILNRYEVVIVDTEAGIE--HFGRGTIE 154 (255)
T ss_pred ccCcchhhhhHHHhhhcCCccEEEeccccCCCCcccch---HHHHHHHHHHHHhcccCcEEEEecccchh--hhcccccc
Confidence 001122345666666555333333332 24667777777763669999999999888 67777777
Q ss_pred cCceEEEeeCCchhhHHHHHHHHHHhhhCCCCeeEEEEccccC
Q 028600 163 QLSGALIVSTPQDVALIDARKGITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 163 ~~d~vi~v~~~~~~~~~~~~~~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
.+|.+|+|++|+..++.-+.++-+.-++.+++.+.+|+||++.
T Consensus 155 ~vD~vivVvDpS~~sl~taeri~~L~~elg~k~i~~V~NKv~e 197 (255)
T COG3640 155 GVDLVIVVVDPSYKSLRTAERIKELAEELGIKRIFVVLNKVDE 197 (255)
T ss_pred CCCEEEEEeCCcHHHHHHHHHHHHHHHHhCCceEEEEEeeccc
Confidence 9999999999999999999999999999998888999999974
No 49
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=99.89 E-value=8.9e-22 Score=157.16 Aligned_cols=170 Identities=21% Similarity=0.234 Sum_probs=113.8
Q ss_pred cCCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccccCCcccccc---cccee-------
Q 028600 27 IDGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKD---MKMVP------- 96 (207)
Q Consensus 27 ~~~~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~~~~~~~~~---~~~~~------- 96 (207)
..+..++|+|+ +|||+||||+++|||.++|+ .|+||++||+|++.++++.+|+......+.+. ....+
T Consensus 27 ~~~~~~ii~v~-gkgG~GKSt~a~nLa~~la~-~g~rVllid~D~~~~~~~~~~g~~~~~~i~d~~~~~~l~~~~~~~~d 104 (329)
T cd02033 27 PTKKTQIIAIY-GKGGIGKSFTLANLSYMMAQ-QGKRVLLIGCDPKSDTTSLLFGGKACPTIIETSAKKKLAGEEVQIGD 104 (329)
T ss_pred CCCCCeEEEEE-CCCCCCHHHHHHHHHHHHHH-CCCcEEEEEeeecccccchhccccCCCcccccccccccCcccceeec
Confidence 34558999998 59999999999999999999 99999999999999999999986654443321 10110
Q ss_pred --cccccceeecccccCCCCCcccccchhhH--HHHHHHHHh---cccCCCCEEEEcCCCCCCcchhhhhh-hhcCceEE
Q 028600 97 --IENYGVKCMSMGFLVPSSSPVVWRGPMVM--SALRKMSRE---VDWGNLDILVIDMPPGTGDAQLTTTQ-TLQLSGAL 168 (207)
Q Consensus 97 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~---l~~~~~D~IiiD~~~~~~~~~~~~~~-~~~~d~vi 168 (207)
....+++++..+ .+..+++.... -...++++. .. ..|||||||+++...+..+.+.. ...+|.+|
T Consensus 105 v~~~~~gv~~~~~g------~p~~~~G~~~~~~i~~~~~l~~l~~~~-w~~DyVliD~~gdv~~ggf~l~i~~~~ad~VI 177 (329)
T cd02033 105 VCFKRDGVFAMELG------GPEVGRGCGGRGIIHGFELLEKLGFHD-WDFDYVLLDFLGDVVCGGFGLPIARDMAQKVI 177 (329)
T ss_pred eEEEeCCEEEecCC------CCeecccccchHHHHHHHHHHHccCcc-ccCCEEEEecCCcceeccccchhhhcCCceEE
Confidence 011244444322 11122222111 111134444 35 58999999998765432232222 12478999
Q ss_pred EeeCCchhhHHH---HHHHHHHhhhCC--CCeeEEEEccccC
Q 028600 169 IVSTPQDVALID---ARKGITMFSKVQ--VPVCSFLAQIISS 205 (207)
Q Consensus 169 ~v~~~~~~~~~~---~~~~l~~l~~~~--~~~~g~v~N~~~~ 205 (207)
+|+.++..++.. +.+.++.+++.+ .+++|+|+||++.
T Consensus 178 VVt~pe~~si~~A~~v~kai~~~~~lg~~~~i~GlViNr~d~ 219 (329)
T cd02033 178 VVGSNDLQSLYVANNVCNAVEYFRKLGGNVGVAGMVINKDDG 219 (329)
T ss_pred EeCCchHHHHHHHHHHHHHHHHHHHhCCCCCceEEEEeCcCC
Confidence 999999998854 566778888774 5679999999874
No 50
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=99.88 E-value=2.5e-22 Score=153.06 Aligned_cols=161 Identities=21% Similarity=0.314 Sum_probs=108.4
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCC-------CccccccccCCccccccccceecc--------
Q 028600 34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGP-------SVPMMMKIDQKPEVTKDMKMVPIE-------- 98 (207)
Q Consensus 34 I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~-------~l~~~~~~~~~~~~~~~~~~~~~~-------- 98 (207)
|.++++|||+||||++.++|.++|+ .|+||++||+|++.+ +++..++..+.. ...........
T Consensus 1 ~~~~~g~~g~Gkt~~~~~la~~~a~-~g~~~~l~~~d~~~~~~~~~~~~L~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~ 78 (217)
T cd02035 1 VIFFTGKGGVGKTTIAAATAVRLAE-EGKKVLLVSTDPAHNLSDKGLPNLSDAFIVEDPE-IAPNLYREEVDATRRVERA 78 (217)
T ss_pred CEEEeCCCCchHHHHHHHHHHHHHH-CCCcEEEEECCCCcccccccCCCchhhhccCChH-HHHHHHHHHHHHHHHhhhc
Confidence 3567899999999999999999999 999999999999983 444444421110 00000000000
Q ss_pred --cccceeecccccCCCCCcccccchhhHHHHHHHHHhcccCC-CCEEEEcCCCCCCcch-hhhhhhhc--CceEEEeeC
Q 028600 99 --NYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGN-LDILVIDMPPGTGDAQ-LTTTQTLQ--LSGALIVST 172 (207)
Q Consensus 99 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~-~D~IiiD~~~~~~~~~-~~~~~~~~--~d~vi~v~~ 172 (207)
..+...++.+...+.. ...-.+.++++.++ .. ||+||+|+||...... +....+.. +|.+++|+.
T Consensus 79 ~~~~~~~~~~~~~~~p~~--------~ell~~~~l~~~l~-~~~yD~IIiD~pp~~~~~~~l~~~~l~~~~~~~vllV~~ 149 (217)
T cd02035 79 WGGEGGLMLELAAALPGI--------EELASLLAVFREFS-EGLYDVIVFDTAPTGHTLRLLVRELLTDPERTSFRLVTL 149 (217)
T ss_pred ccchhhhHHhHhccCCCH--------HHHHHHHHHHHHHh-cCCCCEEEECCCCchHHHHHHHHHHccCCCceEEEEEeC
Confidence 0122223333222222 12223777888877 65 9999999999643211 21222222 479999999
Q ss_pred CchhhHHHHHHHHHHhhhCCCCeeEEEEccccC
Q 028600 173 PQDVALIDARKGITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 173 ~~~~~~~~~~~~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
++..+...+.+.++.+++.+.++.|+|+|++..
T Consensus 150 p~~~s~~~~~~~l~~l~~~~~~~~glVlN~~~~ 182 (217)
T cd02035 150 PEKLPLYETERAITELALYGIPVDAVVVNRVLP 182 (217)
T ss_pred CCccHHHHHHHHHHHHHHCCCCCCEEEEeCCcC
Confidence 999999999999999999999999999999864
No 51
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=99.88 E-value=1.2e-21 Score=139.23 Aligned_cols=108 Identities=35% Similarity=0.453 Sum_probs=94.0
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccccCCccccccccceecccccceeecccccCC
Q 028600 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGFLVP 112 (207)
Q Consensus 33 ~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (207)
+|+|+++|||+||||++.++|..+++ +|++|+++|+|++.+++.
T Consensus 1 ~i~~~~~kgg~gkt~~~~~~a~~~~~-~~~~~~~vd~D~~~~~~~----------------------------------- 44 (139)
T cd02038 1 IIAVTSGKGGVGKTNISANLALALAK-LGKRVLLLDADLGLANLD----------------------------------- 44 (139)
T ss_pred CEEEEcCCCCCcHHHHHHHHHHHHHH-CCCcEEEEECCCCCCCCC-----------------------------------
Confidence 58999999999999999999999999 999999999998775532
Q ss_pred CCCcccccchhhHHHHHHHHHhcccCCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCchhhHHHHHHHHHHhhhC-
Q 028600 113 SSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKV- 191 (207)
Q Consensus 113 ~~~~~~~~~~~~~~~l~~~~~~l~~~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~~~~~~~~~~l~~l~~~- 191 (207)
||+||+|+|++++.. ....+..+|.+++|++++..++..+.+.++.+.+.
T Consensus 45 ---------------------------yd~VIiD~p~~~~~~--~~~~l~~aD~vviv~~~~~~s~~~~~~~l~~l~~~~ 95 (139)
T cd02038 45 ---------------------------YDYIIIDTGAGISDN--VLDFFLAADEVIVVTTPEPTSITDAYALIKKLAKQL 95 (139)
T ss_pred ---------------------------CCEEEEECCCCCCHH--HHHHHHhCCeEEEEcCCChhHHHHHHHHHHHHHHhc
Confidence 999999999988743 35667799999999999999999999999888654
Q ss_pred CCCeeEEEEccccC
Q 028600 192 QVPVCSFLAQIISS 205 (207)
Q Consensus 192 ~~~~~g~v~N~~~~ 205 (207)
+...+++|+|++++
T Consensus 96 ~~~~~~lVvN~~~~ 109 (139)
T cd02038 96 RVLNFRVVVNRAES 109 (139)
T ss_pred CCCCEEEEEeCCCC
Confidence 44567999999874
No 52
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=99.88 E-value=1.5e-21 Score=148.20 Aligned_cols=167 Identities=25% Similarity=0.362 Sum_probs=113.1
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccccCCcc----------cccc---------
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPE----------VTKD--------- 91 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~~~~~----------~~~~--------- 91 (207)
|+.|+|+|+|||+||||++++||..++. .++++++|+|...|+++.+|+.+.... +.+.
T Consensus 1 mm~vAV~sGKGGtGKTTva~~la~~l~~--~~~~~l~DcDVe~PNl~l~l~~e~~~~~e~~~~~~p~i~~e~C~~CG~C~ 78 (284)
T COG1149 1 MMQVAVASGKGGTGKTTVAANLAVLLGD--KYKLVLADCDVEAPNLHLLLGVEVLEEEEVIRGEIPEIDPEKCIRCGKCA 78 (284)
T ss_pred CcEEEEeecCCCCChhhHHHHHHHHhcc--ccceEEEecCCCCCCcceEeccchhhhhHHHHhhccccChhhccccCcHH
Confidence 4679999999999999999999999998 789999999999999999998764311 1110
Q ss_pred -----ccce--ecccccc----------eeeccc------------ccC----CCCCcccc----cchhhH-HHHHHHHH
Q 028600 92 -----MKMV--PIENYGV----------KCMSMG------------FLV----PSSSPVVW----RGPMVM-SALRKMSR 133 (207)
Q Consensus 92 -----~~~~--~~~~~~~----------~~~~~~------------~~~----~~~~~~~~----~~~~~~-~~l~~~~~ 133 (207)
+.+. +.....+ -.+.+. .+. +...+... .+...+ .-+..+..
T Consensus 79 ~vC~f~Ai~~~~~~~~~~~~~lC~GCgaC~~~CP~~AI~~~~~~~G~i~~~k~~~g~~li~g~l~vGe~~s~~lV~~~kk 158 (284)
T COG1149 79 EVCRFGAIVVLPGGKPVLNPDLCEGCGACSIVCPEPAIEEEPVVIGKIYESKTDYGFPLISGRLNVGEEESGKLVTALKK 158 (284)
T ss_pred HhCCCCeEEEcCCCceecCcccccCcccceeeCCCcccccccceeeEEEEEEcCCCceeEEeeccCCccccchHHHHHHH
Confidence 0010 0000000 000000 000 00000000 011111 22222222
Q ss_pred hcccCCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCchhhHHHHHHHHHHhhhCCCCeeEEEEccc
Q 028600 134 EVDWGNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPVCSFLAQII 203 (207)
Q Consensus 134 ~l~~~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~~~~~~~~~~l~~l~~~~~~~~g~v~N~~ 203 (207)
..+ +.-|++|||+||+.++.. +.++..+|.+|+|++|.+.++++++++++..+.++++. ++|+||+
T Consensus 159 ~a~-E~~~~~IIDsaaG~gCpV--i~sl~~aD~ai~VTEPTp~glhD~kr~~el~~~f~ip~-~iViNr~ 224 (284)
T COG1149 159 HAK-ELADLLIIDSAAGTGCPV--IASLKGADLAILVTEPTPFGLHDLKRALELVEHFGIPT-GIVINRY 224 (284)
T ss_pred hhh-hhcceeEEecCCCCCChH--HHhhccCCEEEEEecCCccchhHHHHHHHHHHHhCCce-EEEEecC
Confidence 333 347999999999999643 56777999999999999999999999999999999998 8999999
No 53
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=99.87 E-value=4.9e-22 Score=154.73 Aligned_cols=170 Identities=21% Similarity=0.252 Sum_probs=106.8
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccccC------Cccccccc--ccee------ccc
Q 028600 34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQ------KPEVTKDM--KMVP------IEN 99 (207)
Q Consensus 34 I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~~------~~~~~~~~--~~~~------~~~ 99 (207)
+.++++|||+||||+++++|.++|+ .|+||++||+|++ ++++..|+.+. .....+.. .+.+ ...
T Consensus 2 ~~~~~gkgG~GKtt~a~~la~~~a~-~g~~vLlvd~D~~-~sl~~~~~~~~~~~~~~~~g~~~L~~~~id~~~~~~~~~~ 79 (254)
T cd00550 2 YIFFGGKGGVGKTTISAATAVRLAE-QGKKVLLVSTDPA-HSLSDSFNQEFGKGPTPVKGVENLSAMEIDPQEALEEYRQ 79 (254)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHH-CCCCceEEeCCCc-ccHHHHhCCccCCCCcccccCCCceEEecCHHHHHHHHHH
Confidence 4556899999999999999999999 9999999999997 69999988762 11122110 0000 000
Q ss_pred ccceeecccccCCCC-----CcccccchhhHHHHHHHHHhcccCCCCEEEEcCCCCCCcc-hhhhh--------hh--hc
Q 028600 100 YGVKCMSMGFLVPSS-----SPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDA-QLTTT--------QT--LQ 163 (207)
Q Consensus 100 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~l~~~~~D~IiiD~~~~~~~~-~~~~~--------~~--~~ 163 (207)
..++.+..+...... .....++....-.+..+.+.+.+.+||+|||||||..... .+.+. .+ ..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~Pg~~e~l~~~~~~~~l~~~~yD~VVvDtpPtg~tlrlL~lp~~l~~~~~~l~d~~ 159 (254)
T cd00550 80 EVLEPIEANLLLEMLKGILEEELESPGIEEIAAFDEFSRYIDEAEYDVVVFDTAPTGHTLRLLSLPTVLSWAREILSDPE 159 (254)
T ss_pred HHHHHHHhhccchhHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCEEEECCCCcHHHHHHHHhHHHHHHHHHHhcCCc
Confidence 011112111000000 0000012222223333334333268999999999842210 01110 11 12
Q ss_pred CceEEEeeCCchhhHHHHHHHHHHhhhCCCCeeEEEEccccC
Q 028600 164 LSGALIVSTPQDVALIDARKGITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 164 ~d~vi~v~~~~~~~~~~~~~~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
.+.+++|+.++..+...+.+.++.+++.++++.|+|+|++..
T Consensus 160 ~~~~vlV~~p~~~~~~e~~r~~~~L~~~g~~v~gvV~N~v~~ 201 (254)
T cd00550 160 RTSFRLVCIPEKMSLYETERAIQELAKYGIDVDAVIVNQLLP 201 (254)
T ss_pred ceEEEEEeCCChhHHHHHHHHHHHHHHCCCCCCEEEEecCcc
Confidence 458999999999999999999999999999999999999864
No 54
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=99.87 E-value=5.5e-21 Score=129.31 Aligned_cols=99 Identities=38% Similarity=0.457 Sum_probs=86.0
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccccCCccccccccceecccccceeecccccCC
Q 028600 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGFLVP 112 (207)
Q Consensus 33 ~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (207)
+|+|.|.|||+||||++.+||..+++ .|++|+++|+|++
T Consensus 1 ~i~~~~~kgG~Gkst~~~~la~~~~~-~~~~vl~~d~d~~---------------------------------------- 39 (104)
T cd02042 1 VIAVANQKGGVGKTTTAVNLAAALAR-RGKRVLLIDLDPQ---------------------------------------- 39 (104)
T ss_pred CEEEEeCCCCcCHHHHHHHHHHHHHh-CCCcEEEEeCCCC----------------------------------------
Confidence 48999999999999999999999999 9999999999987
Q ss_pred CCCcccccchhhHHHHHHHHHhcccCCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCchhhHHHHHHHHH---Hhh
Q 028600 113 SSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGIT---MFS 189 (207)
Q Consensus 113 ~~~~~~~~~~~~~~~l~~~~~~l~~~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~~~~~~~~~~l~---~l~ 189 (207)
||+||||+||+.+.. ....+..+|.+++|++++..++..+.++++ ..+
T Consensus 40 ---------------------------~d~viiD~p~~~~~~--~~~~l~~ad~viv~~~~~~~s~~~~~~~~~~~~~~~ 90 (104)
T cd02042 40 ---------------------------YDYIIIDTPPSLGLL--TRNALAAADLVLIPVQPSPLDLDGLEKLLETLILED 90 (104)
T ss_pred ---------------------------CCEEEEeCcCCCCHH--HHHHHHHCCEEEEeccCCHHHHHHHHHHHHHHHHHH
Confidence 999999999988743 346667899999999999999999999987 333
Q ss_pred --hCCCCeeEEEEc
Q 028600 190 --KVQVPVCSFLAQ 201 (207)
Q Consensus 190 --~~~~~~~g~v~N 201 (207)
.......++|+|
T Consensus 91 ~~~~~~~~~~vv~n 104 (104)
T cd02042 91 RLNPDLDILGILPT 104 (104)
T ss_pred hcCCCCceEEEEeC
Confidence 234557888887
No 55
>PF13614 AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ_A 3KB1_B 1ION_A 3LA6_H 3BFV_B 3CIO_D.
Probab=99.85 E-value=6.4e-22 Score=143.50 Aligned_cols=139 Identities=24% Similarity=0.321 Sum_probs=99.8
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccccCCccccccccce----------------
Q 028600 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMV---------------- 95 (207)
Q Consensus 32 k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~~~~~~~~~~~~~---------------- 95 (207)
|+|+|+|++||+|||++|.+||..+|+ .|++|++||+|...+.+..+++.+...++.+.-...
T Consensus 1 k~i~v~s~~~g~G~t~~a~~lA~~la~-~~~~Vllid~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~ 79 (157)
T PF13614_consen 1 KVIAVWSPKGGVGKTTLALNLAAALAR-KGKKVLLIDFDFFSPSLSRLLGIEPERGLSDLLYDKKSGDENLSERDLSDHI 79 (157)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHH-TTT-EEEEE--SSS-HHHHHTTSSSSSSHHHHHTTSHC--C-HHHSHHHHHC
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHHHh-cCCCeEEEECCCCCCCcccccccccccchhhHhcCccccccchhhhhHHHHh
Confidence 789999999999999999999999999 999999999999999999998887764444321111
Q ss_pred -ecccccceeecccccCCCCCcccccchhhHHHHHHHHHhcccCCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCc
Q 028600 96 -PIENYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQ 174 (207)
Q Consensus 96 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~ 174 (207)
+....++.+++.. ...........+.+.++++.++ +.||+||||+|+.+..... ...+..+|.+|+|+.++
T Consensus 80 ~~~~~~~l~~~~~~------~~~~~~~~~~~~~~~~li~~l~-~~yd~IivD~~~~~~~~~~-~~~l~~~D~ii~v~~~~ 151 (157)
T PF13614_consen 80 YSDAHDGLDLLPPP------SSPEDLEELTPEDVEELIDALK-EHYDYIIVDLPSSLSNPDT-QAVLELADKIILVVRPD 151 (157)
T ss_dssp EEESSTTEEEE--S------SSSHHHHHHTSHHHHHHHHHHH-HHSSEEEEEEESTTTHTHH-HHHHTTHSEEEEEEETT
T ss_pred eeccCCCeEEecCC------CCCCchhhcCHHHHHHHHHHHH-HcCCEEEEECcCCccHHHH-HHHHHHCCEEEEEECCC
Confidence 0011233333322 1111112345688999999999 8999999999998775433 34677899999999999
Q ss_pred hhhHH
Q 028600 175 DVALI 179 (207)
Q Consensus 175 ~~~~~ 179 (207)
..+.+
T Consensus 152 ~~s~~ 156 (157)
T PF13614_consen 152 VTSIR 156 (157)
T ss_dssp HHHHH
T ss_pred ccccc
Confidence 88765
No 56
>PF09140 MipZ: ATPase MipZ; InterPro: IPR015223 Cell division in bacteria is facilitated by a polymeric ring structure, the Z ring, composed of tubulin-like FtsZ protofilaments. Correct positioning of the division plane is a prerequisite for the generation of daughter cells with a normal chromosome complement. In Caulobacter crescentus MipZ, an essential protein, coordinates and regulates the assembly of the FtsZ cytokinetic ring during cell division. MipZ, forms a complex with the partitioning protein ParB near the origin of replication and localizes with the duplicated origin regions to the cell poles. MipZ also directly interferes with FtsZ polymerisation, thereby restricting FtsZ ring formation to mid-cell, the region of lowest MipZ concentration. In eukaryotes members of this entry belong to the Mrp/NBP35 ATP-binding protein family, and specifically the NUBP2/CFD1 subfamily. This includes the cytosolic Fe-S cluster assembly factor Cfd1, which is a component of the cytosolic iron-sulphur (Fe/S) protein assembly machinery. This protein is required for maturation of extra-mitochondrial Fe/S proteins. It may bind and transfer a labile 4Fe-4S cluster to target apoproteins. Cfd1 is also required for biogenesis and export of both ribosomal subunits, suggesting a role in assembly of the Fe/S clusters in RLI1, a protein which performs rRNA processing and ribosome export. ; PDB: 2XIT_B 2XJ4_A 2XJ9_A.
Probab=99.83 E-value=1.4e-21 Score=147.43 Aligned_cols=133 Identities=35% Similarity=0.433 Sum_probs=81.0
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccccCCccccccccceecccccceeecccccC
Q 028600 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGFLV 111 (207)
Q Consensus 32 k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (207)
.+|+|.|+|||+||||+|+|||.+|++ .|+||.++|+|.+++++..+++......... ....+.. ....++
T Consensus 1 HiIvV~sgKGGvGKSTva~~lA~aLa~-~G~kVg~lD~Di~q~S~~r~l~nr~~~~~~~-gi~Lp~p--~~~~L~----- 71 (261)
T PF09140_consen 1 HIIVVGSGKGGVGKSTVAVNLAVALAR-MGKKVGLLDLDIRQPSLPRYLENRAAWAQRD-GIELPVP--SHFFLP----- 71 (261)
T ss_dssp EEEEEE-SSTTTTHHHHHHHHHHHHHC-TT--EEEEE--TTT-HHHHHHHHHHHHHHHH-T--------EEE-SS-----
T ss_pred CEEEEecCCCCCcHHHHHHHHHHHHHH-CCCeEEEEecCCCCCCHHHHHhccchhHHhc-CcccCCc--cceeec-----
Confidence 479999999999999999999999999 9999999999999999999887543211101 0001100 000111
Q ss_pred CCCCcccccchhhHHHHHHHHHhcccCCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCchh
Q 028600 112 PSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDV 176 (207)
Q Consensus 112 ~~~~~~~~~~~~~~~~l~~~~~~l~~~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~~ 176 (207)
.........+......+.+++..+. ..+||||||||++ ++ .+...+...||.+|.|.+.+..
T Consensus 72 ~~~~~v~~~~~~~~~~L~q~l~~l~-~~~DfLVID~PGt-d~-~lsr~Ahs~ADtLiTPlNdSfv 133 (261)
T PF09140_consen 72 PDQASVWEGENVEDKRLEQALADLE-GDLDFLVIDTPGT-DD-RLSRVAHSMADTLITPLNDSFV 133 (261)
T ss_dssp SHHHHTTS-HHHHHHHHHHHHHHHH-HH-SEEEEEE-SS-S--HHHHHHHHT-SEEEEEEESSHH
T ss_pred ccccccccCcchhHHHHHHHHHHHh-cCCCEEEEeCCCC-Cc-HHHHHHHHhCCEEEccCchhHH
Confidence 1000111112233468889999988 8999999999954 33 4445666689999998777654
No 57
>PF00142 Fer4_NifH: 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family; InterPro: IPR000392 This entry represents members of the NifH/BchL/ChlL family. Nitrogen fixing bacteria possess a nitrogenase enzyme complex that catalyses the reduction of molecular nitrogen to ammonia [, , ]. The nitrogenase enzyme complex consists of two components: Component I is nitrogenase MoFe protein or dinitrogenase, which contains 2 molecules each of 2 non-identical subunits. Component II is nitrogenase Fe protein or dinitrogenase reductase, which is a homodimer. The monomer is encoded by the nifH gene []. Component II has 2 ATP-binding domains and one 4Fe-4S cluster per homodimer: it supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component I for the reduction of molecular nitrogen to ammonia []. There are a number of conserved regions in the sequence of these proteins: in the N-terminal section there is an ATP-binding site motif 'A' (P-loop) IPR001687 from INTERPRO and in the central section there are two conserved cysteines which have been shown, in nifH, to be the ligands of the 4Fe-4S cluster. Protochlorophyllide reductase is involved in light-independent chlorophyll biosynthesis. The light-independent reaction uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This enzyme complex is composed of three subunits: ChlL, ChlN and ChlB. ChlL is present as a homodimer, and binds one 4Fe-4S cluster per dimer. The conserved domains, including the ATP-binding motif and the Fe-S binding motif found in the three subunits, are similar to those in nitrogenases []. ; GO: 0005524 ATP binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1CP2_A 2AFI_F 1N2C_F 1FP6_C 2AFK_G 1M34_M 1XD8_A 1NIP_A 1M1Y_N 1G21_H ....
Probab=99.81 E-value=5.8e-19 Score=134.60 Aligned_cols=166 Identities=22% Similarity=0.242 Sum_probs=115.3
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccccCCccccc------------cccceeccc
Q 028600 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTK------------DMKMVPIEN 99 (207)
Q Consensus 32 k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~~~~~~~~------------~~~~~~~~~ 99 (207)
|.|+|+ +|||+||||++.||+.+||+ .|+||+.|-|||...+...+++-...+++-+ .+.+.....
T Consensus 1 r~IAiY-GKGGIGKST~~~Nlsaala~-~G~kVl~iGCDPK~DST~~ll~g~~~~Tvld~~~~~~~~e~~~ledvv~~G~ 78 (273)
T PF00142_consen 1 RKIAIY-GKGGIGKSTTASNLSAALAE-MGKKVLQIGCDPKADSTRLLLGGKAIPTVLDLLREKGSVEDLELEDVVKEGF 78 (273)
T ss_dssp EEEEEE-ESTTSSHHHHHHHHHHHHHH-TT--EEEEEESSSSTSSCHHHTTSS-SBHHHHHHHHCTGGGS-HHHHSEEEG
T ss_pred CeEEEE-cCCCcccChhhhHHHHHHHh-ccceeeEecccCCCccceeccCCccchhHHHHHhhccccccCCCCcEEEecc
Confidence 578995 99999999999999999999 9999999999999988877776554433322 123455566
Q ss_pred ccceeecccccCCCCCcccccchhhHHHHHHHH--HhcccCCCCEEEEcCCCCCCcchhhhhhh-hcCceEEEeeCCchh
Q 028600 100 YGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMS--REVDWGNLDILVIDMPPGTGDAQLTTTQT-LQLSGALIVSTPQDV 176 (207)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~l~~~~~D~IiiD~~~~~~~~~~~~~~~-~~~d~vi~v~~~~~~ 176 (207)
.++.++.+| .+++...+.++.....++-+- .... .+||+|++|.-+..-+..++++.- ..+|.+++|+..+.+
T Consensus 79 ~gi~CvEsG---GPePGvGCaGRGI~~a~~~L~~~~~~~-~~~D~v~yDVLGDVVCGGFamPir~g~a~evyIVtSge~m 154 (273)
T PF00142_consen 79 KGILCVESG---GPEPGVGCAGRGIITALELLEELGAYE-DDYDFVLYDVLGDVVCGGFAMPIREGYAQEVYIVTSGEFM 154 (273)
T ss_dssp GGEEEEE------SCTTSSBHHHHHHHHHHHHHHTTTST-STSSEEEEEEESSSSCTTTTHHHHTTS-SEEEEEEBSSHH
T ss_pred CCceeeccC---CCcccccccccchhhhhhhHHhhhhhh-cCCceEEEEEEeeeEEeeeehhhhhccCCEEEEEecCcHH
Confidence 788899888 445555555544444433322 2233 569999999987665556654432 168999999999999
Q ss_pred hHHHHHHHHHHhhhC----CCCeeEEEEccc
Q 028600 177 ALIDARKGITMFSKV----QVPVCSFLAQII 203 (207)
Q Consensus 177 ~~~~~~~~l~~l~~~----~~~~~g~v~N~~ 203 (207)
++..+.+++..++++ +.++.|+|.|+-
T Consensus 155 slyAANNI~~~i~~~~~~g~~~l~GiI~N~r 185 (273)
T PF00142_consen 155 SLYAANNICKAIKNFADRGGARLGGIICNSR 185 (273)
T ss_dssp HHHHHHHHHHHHHHHCTTSS-EEEEEEEE-S
T ss_pred HHHHHHHHHHHHHHHhccCCCceEEEEecCC
Confidence 998888888777755 346888999954
No 58
>COG4963 CpaE Flp pilus assembly protein, ATPase CpaE [Intracellular trafficking and secretion]
Probab=99.80 E-value=1.6e-18 Score=137.82 Aligned_cols=171 Identities=21% Similarity=0.255 Sum_probs=135.1
Q ss_pred cCCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccccCCcccccc------------ccc
Q 028600 27 IDGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKD------------MKM 94 (207)
Q Consensus 27 ~~~~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~~~~~~~~~------------~~~ 94 (207)
....+++++|.++|||+|-||+|.|+|+.++...+..|+++|+|.+.+....+++.++..++.+. +..
T Consensus 100 ~~~~~r~iafl~akgg~g~stlA~n~a~~l~~~~~~~v~L~DL~~~~G~~~~~l~~~~a~~i~~~~~~peRLDq~lld~~ 179 (366)
T COG4963 100 IAQQGRELAFLGAKGGVGTSTLAHNLAKGLAILSGAAVLLVDLDLQGGTAALYLDQDPAFGIAEAVKQPERLDQVLLDSL 179 (366)
T ss_pred hhhhceEEEEEeecCCcchHHHHHHHHHHHhhhcCCcEEEEEcCCCCcchhhhcCCCchhhHHHHhcCHHHhhHHHHHHH
Confidence 44558999999999999999999999999999899999999999999988888888876655543 222
Q ss_pred eecccccceeecccccCCCCCcccccchhhHHHHHHHHHhcccCCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCc
Q 028600 95 VPIENYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQ 174 (207)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~ 174 (207)
......++++++....+.... ......+..+++.++ ..||+||+|.|..+. .|+...+.++|.+++|++++
T Consensus 180 ~~~~~~~l~ll~a~~~~~~~~------d~~~~~~~~Ll~~~~-~~~~~vV~Dlp~~~~--~~t~~vL~~Sd~iviv~e~s 250 (366)
T COG4963 180 LTRLASGLKLLAAPTELAKNY------DLKTGAVERLLDLLR-GSFDFVVVDLPNIWT--DWTRQVLSGSDEIVIVAEPS 250 (366)
T ss_pred HhccCCCceeecCCcchhhhc------ccccchHHHHHHHhh-ccCCeEEEcCCCccc--hHHHHHHhcCCeEEEEeccc
Confidence 333344555554433222222 234567778888888 999999999996666 66777788999999999999
Q ss_pred hhhHHHHHHHHHHhhhCC--CCeeEEEEccccCC
Q 028600 175 DVALIDARKGITMFSKVQ--VPVCSFLAQIISSM 206 (207)
Q Consensus 175 ~~~~~~~~~~l~~l~~~~--~~~~g~v~N~~~~~ 206 (207)
..++...+++++.+++.. .+....|+|++..+
T Consensus 251 l~slR~ak~lld~l~~~r~~~~~p~lv~n~~~~~ 284 (366)
T COG4963 251 LASLRNAKELLDELKRLRPNDPKPILVLNRVGVP 284 (366)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCceEEeeecCCC
Confidence 999999999999999774 44568999998743
No 59
>COG1348 NifH Nitrogenase subunit NifH (ATPase) [Inorganic ion transport and metabolism]
Probab=99.80 E-value=1.9e-18 Score=128.35 Aligned_cols=167 Identities=26% Similarity=0.282 Sum_probs=125.5
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccccCCcccc------------ccccceecc
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVT------------KDMKMVPIE 98 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~~~~~~~------------~~~~~~~~~ 98 (207)
++.|+|+ +|||+||||++.|+|.++|+ .|+||++|-|||.+.+...+++-...++.- +.+.+....
T Consensus 1 mr~iAiY-GKGGIGKSTts~N~aAAla~-~GkkVl~vGCDPKaDSTr~Llgg~~ipTVld~lre~~~~e~~~ledvi~~G 78 (278)
T COG1348 1 MRQIAIY-GKGGIGKSTTSQNLAAALAE-LGKKVLIVGCDPKADSTRLLLGGKAIPTVLDTLREKGEVEDLELEDVIFTG 78 (278)
T ss_pred CceEEEe-cCCCcCcchhHHHHHHHHHH-cCCeEEEEcCCCCcchHHHHhCCcccchHHHHHHhcCccccCCHHHheecc
Confidence 4789995 99999999999999999999 999999999999999988888844333222 124566677
Q ss_pred cccceeecccccCCCCCcccccchhhHHHHHHHHHhccc--CCCCEEEEcCCCCCCcchhhhhhhh--cCceEEEeeCCc
Q 028600 99 NYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDW--GNLDILVIDMPPGTGDAQLTTTQTL--QLSGALIVSTPQ 174 (207)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~--~~~D~IiiD~~~~~~~~~~~~~~~~--~~d~vi~v~~~~ 174 (207)
..+++++.+| .+++...+.++.....++.+ +++.. ...|+|++|..+..-|..|+++ ++ ++|.+++|++.+
T Consensus 79 f~Gv~CVEsG---GPepGvGCAGRGVitai~~L-e~lgaf~~~~DvviyDVLGDVVCGGFAmP-iReg~AdeiyIVtSge 153 (278)
T COG1348 79 FGGVKCVESG---GPEPGVGCAGRGVITAINLL-EELGAFEEDLDVVIYDVLGDVVCGGFAMP-IREGYADEIYIVTSGE 153 (278)
T ss_pred CCceEEeecC---CCCCCCCcccchHHHHHHHH-HHhCCccccCCEEEEeccCceeecceeee-hhcccCcEEEEEecCc
Confidence 7889999888 56666666666655555433 33311 4469999999986655566444 33 699999999999
Q ss_pred hhhHHHHHHHHHHhhhC----CCCeeEEEEcccc
Q 028600 175 DVALIDARKGITMFSKV----QVPVCSFLAQIIS 204 (207)
Q Consensus 175 ~~~~~~~~~~l~~l~~~----~~~~~g~v~N~~~ 204 (207)
.+++..+.++.+-+.+. +...-|+|.|+-.
T Consensus 154 ~MalYAANNI~kgi~k~a~~~~~rLgGiIcNsr~ 187 (278)
T COG1348 154 MMALYAANNIAKGIRKYAKTGGVRLGGIICNSRS 187 (278)
T ss_pred hHHHHHHHHHHHHHHHHhhcCCcceeeEEecCCC
Confidence 99988888777666544 4567888888744
No 60
>PF02374 ArsA_ATPase: Anion-transporting ATPase; PDB: 2WOO_A 3IBG_B 3SJA_A 3H84_B 3SJD_A 3ZS9_A 3A37_A 2WOJ_A 3SJC_B 3A36_B ....
Probab=99.74 E-value=4.7e-18 Score=135.34 Aligned_cols=168 Identities=21% Similarity=0.294 Sum_probs=100.8
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccccCCccccccc--------cceecc-----
Q 028600 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDM--------KMVPIE----- 98 (207)
Q Consensus 32 k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~~~~~~~~~~--------~~~~~~----- 98 (207)
|+|.| ++|||+||||+|+.+|.++|+ .|+||+++..|+.. ++...|+.+......... ++.+..
T Consensus 2 r~~~~-~GKGGVGKTT~aaA~A~~~A~-~G~rtLlvS~Dpa~-~L~d~l~~~~~~~~~~v~~~~~L~a~eid~~~~~~~~ 78 (305)
T PF02374_consen 2 RILFF-GGKGGVGKTTVAAALALALAR-RGKRTLLVSTDPAH-SLSDVLGQKLGGEPTKVEGVPNLSAMEIDPEAELEEY 78 (305)
T ss_dssp SEEEE-EESTTSSHHHHHHHHHHHHHH-TTS-EEEEESSTTT-HHHHHHTS--BSS-EEETTCSSEEEEE--HHHHHHHH
T ss_pred eEEEE-ecCCCCCcHHHHHHHHHHHhh-CCCCeeEeecCCCc-cHHHHhCCcCCCCCeEecCCCCceeeecCHHHHHHHH
Confidence 45555 799999999999999999999 99999999999955 778888764322111110 000000
Q ss_pred ----cccce-eecccc---cCCCCCcccccchhhHHHHHHHHHhcccCCCCEEEEcCCCCCCcch----------h----
Q 028600 99 ----NYGVK-CMSMGF---LVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQ----------L---- 156 (207)
Q Consensus 99 ----~~~~~-~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~D~IiiD~~~~~~~~~----------~---- 156 (207)
...+. .+.... .... .....++......+..+.+.+...+||+||+||||+-..-. +
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~PG~~E~~~l~~l~~~~~~~~~D~IVvDt~ptg~tLrlL~lP~~l~~~l~~l 157 (305)
T PF02374_consen 79 WEEVQKDLSSLLPLIGLERILDE-ELSSLPGLDELAALLRLADLLESGEYDLIVVDTPPTGHTLRLLSLPERLRWWLDRL 157 (305)
T ss_dssp HHHHHHGCSTCHHCHHHHHHHHH-HTTSSTTHHHHHHHHHHHHHHHHCSTSEEEEESSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhccchhhhhhHHHHHH-HHhcCCcHHHHHHHHHHHHHHHhCCCCEEEECCCCcHHHHHHHhHHHHHHHHHHHH
Confidence 00000 000000 0000 00001222333344444444433899999999999521000 0
Q ss_pred ------------hh----------------------------hhhh--cCceEEEeeCCchhhHHHHHHHHHHhhhCCCC
Q 028600 157 ------------TT----------------------------TQTL--QLSGALIVSTPQDVALIDARKGITMFSKVQVP 194 (207)
Q Consensus 157 ------------~~----------------------------~~~~--~~d~vi~v~~~~~~~~~~~~~~l~~l~~~~~~ 194 (207)
.+ ..+. ....+++|+.|+..++..+.++++.+...|++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~L~dp~~T~~~lV~~pE~l~i~Et~r~~~~L~~~gi~ 237 (305)
T PF02374_consen 158 LKLRRKIRSLARPLSGLGLGAVPLDEILEELEEMRERLERLRELLRDPERTSFRLVTNPEPLAIAETERLLTELKLYGIP 237 (305)
T ss_dssp HHHHHCHHHHHHHHCHSHCCHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTEEEEEEEESSHHHHHHHHHHHHHHHHTT-E
T ss_pred HHHHHhhcchhhhhhcccccccchHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEecCCcchHHHHHHHHHHHHhcCCc
Confidence 00 0010 12468999999999999999999999999999
Q ss_pred eeEEEEccc
Q 028600 195 VCSFLAQII 203 (207)
Q Consensus 195 ~~g~v~N~~ 203 (207)
+-++|+||+
T Consensus 238 v~~vVvNrv 246 (305)
T PF02374_consen 238 VDAVVVNRV 246 (305)
T ss_dssp EEEEEEEEE
T ss_pred cCeEEEEcc
Confidence 999999997
No 61
>COG0003 ArsA Predicted ATPase involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=99.66 E-value=2.1e-15 Score=120.08 Aligned_cols=169 Identities=24% Similarity=0.254 Sum_probs=107.9
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccccCCccccccc------ccee-----cccccc
Q 028600 34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDM------KMVP-----IENYGV 102 (207)
Q Consensus 34 I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~~~~~~~~~~------~~~~-----~~~~~~ 102 (207)
|.++++|||+||||+|+.+|..+|+ .|++|++|-.||.. +++..|+.+-........ ++.+ .....+
T Consensus 4 iv~f~GKGGVGKTT~aaA~A~~lA~-~g~kvLlvStDPAh-sL~d~f~~elg~~~~~I~~nL~a~eiD~~~~l~ey~~~v 81 (322)
T COG0003 4 IVFFTGKGGVGKTTIAAATAVKLAE-SGKKVLLVSTDPAH-SLGDVFDLELGHDPRKVGPNLDALELDPEKALEEYWDEV 81 (322)
T ss_pred EEEEecCCcccHHHHHHHHHHHHHH-cCCcEEEEEeCCCC-chHhhhccccCCchhhcCCCCceeeecHHHHHHHHHHHH
Confidence 4455899999999999999999999 99999999999955 888888773221111100 0000 000000
Q ss_pred e-----eeccccc--CCCCCcccccchhhHHHHHHHHHhcccCCCCEEEEcCCCCCCcc---------h------h----
Q 028600 103 K-----CMSMGFL--VPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDA---------Q------L---- 156 (207)
Q Consensus 103 ~-----~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~D~IiiD~~~~~~~~---------~------~---- 156 (207)
+ .++.+.+ ...+.....++......+..+.+.+.+.+||+||+||+|+-..- . +
T Consensus 82 ~~~~~~~~~~~~l~~~~~~e~~~~PGidE~~~l~~i~e~~~~~~yD~IV~DtaPTG~TLRlL~lP~~~~~~~~~~~~~~~ 161 (322)
T COG0003 82 KDYLARLLRTRGLGGIYADELATLPGIDEALALLKILEYYVSGEYDVIVVDTAPTGHTLRLLSLPEVLGWYLEKLFKPRR 161 (322)
T ss_pred HHHHHhhccccccchhHHHHHhhCCCHHHHHHHHHHHHHHhccCCCEEEEcCCChHHHHHHhccHHHHHHHHHhhhhhHH
Confidence 0 1111110 01111122345555667777777766588999999999942100 0 0
Q ss_pred ----------------------hhhhhh----------------cCceEEEeeCCchhhHHHHHHHHHHhhhCCCCeeEE
Q 028600 157 ----------------------TTTQTL----------------QLSGALIVSTPQDVALIDARKGITMFSKVQVPVCSF 198 (207)
Q Consensus 157 ----------------------~~~~~~----------------~~d~vi~v~~~~~~~~~~~~~~l~~l~~~~~~~~g~ 198 (207)
.+..+. .-....+|..|...++....++++.+.+.++++-++
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~e~L~~~~~~~~~~~~~l~~~~~T~~~lV~~pe~l~l~e~~ra~~~l~~~~i~v~~v 241 (322)
T COG0003 162 KRMVKALKSLSTAAGSPLPDDAVLEALEELKERIADVREVLTNPDGTSFRLVSIPEKLSLYETKRAVERLSLYGIPVDAV 241 (322)
T ss_pred HHHHHhhhhcccccCCcCcHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEEEecccccchHHHHHHHHHHHHcCCchhee
Confidence 000000 023577889999999999999999999999999999
Q ss_pred EEcccc
Q 028600 199 LAQIIS 204 (207)
Q Consensus 199 v~N~~~ 204 (207)
++|++-
T Consensus 242 i~n~~~ 247 (322)
T COG0003 242 IVNKIL 247 (322)
T ss_pred eeeccc
Confidence 999864
No 62
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=99.65 E-value=7.5e-15 Score=105.21 Aligned_cols=146 Identities=17% Similarity=0.221 Sum_probs=84.5
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCc-cccccccCCccccccccceecccccceeecccccCC
Q 028600 34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSV-PMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGFLVP 112 (207)
Q Consensus 34 I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (207)
|.+ .+++|+||||++.+++..+++ .|.+|+++|+|++.+.. ...++.. ..+. .........+..++.+....
T Consensus 2 i~~-~G~~GsGKTt~~~~l~~~~~~-~g~~v~ii~~D~~~~~~~~~~~~~~--~~~~---~~~~~~~~~~~~~~~~~~~~ 74 (148)
T cd03114 2 IGI-TGVPGAGKSTLIDALITALRA-RGKRVAVLAIDPSSPFSGGAILGDR--IRME---RHASDPGVFIRSLATRGFLG 74 (148)
T ss_pred EEE-ECCCCCcHHHHHHHHHHHHHH-CCCEEEEEEeCCCCCCcccchhcCc--eEhh---heecCCCceEEEcCCcCccc
Confidence 455 589999999999999999999 99999999999865321 1112110 0110 11111111222233321111
Q ss_pred CCCcccccchhhHHHHHHHHHhcccCCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCchhhHHHHHHHHHHhhhCC
Q 028600 113 SSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQ 192 (207)
Q Consensus 113 ~~~~~~~~~~~~~~~l~~~~~~l~~~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~~~~~~~~~~l~~l~~~~ 192 (207)
. ......+.++.++..+||+||||+ ++..... ...+..+|.+++|++|+......+.+. ..++.
T Consensus 75 ~----------~~~~~~~~~~~~~~~~~D~iiIDt-aG~~~~~--~~~~~~Ad~~ivv~tpe~~D~y~~~k~-~~~~~-- 138 (148)
T cd03114 75 G----------LSRATPEVIRVLDAAGFDVIIVET-VGVGQSE--VDIASMADTTVVVMAPGAGDDIQAIKA-GIMEI-- 138 (148)
T ss_pred c----------cchhHHHHHHHHHhcCCCEEEEEC-CccChhh--hhHHHhCCEEEEEECCCchhHHHHhhh-hHhhh--
Confidence 0 012234444444326899999999 4565433 345668999999999995443333333 22222
Q ss_pred CCeeEEEEcccc
Q 028600 193 VPVCSFLAQIIS 204 (207)
Q Consensus 193 ~~~~g~v~N~~~ 204 (207)
.. -+++||+|
T Consensus 139 ~~--~~~~~k~~ 148 (148)
T cd03114 139 AD--IVVVNKAD 148 (148)
T ss_pred cC--EEEEeCCC
Confidence 22 47889875
No 63
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=99.65 E-value=2.2e-15 Score=118.18 Aligned_cols=148 Identities=16% Similarity=0.149 Sum_probs=89.5
Q ss_pred CCCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccccCCccccccccceecccccceeeccc
Q 028600 29 GVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMG 108 (207)
Q Consensus 29 ~~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (207)
+.+++|+|+ +.+|+||||++++||..+++ .|++|+++|+|+........+. .+ ....++.+++.+
T Consensus 70 ~~~~vi~l~-G~~G~GKTTt~akLA~~l~~-~g~~V~li~~D~~r~~a~~ql~--------~~-----~~~~~i~~~~~~ 134 (272)
T TIGR00064 70 NKPNVILFV-GVNGVGKTTTIAKLANKLKK-QGKSVLLAAGDTFRAAAIEQLE--------EW-----AKRLGVDVIKQK 134 (272)
T ss_pred CCCeEEEEE-CCCCCcHHHHHHHHHHHHHh-cCCEEEEEeCCCCCHHHHHHHH--------HH-----HHhCCeEEEeCC
Confidence 347899998 79999999999999999998 9999999999985433111110 00 000012222111
Q ss_pred ccCCCCCcccccchhhHHHHHHHHHhcccCCCCEEEEcCCCCCCcchhhhh-------hhh-----cCceEEEeeCCchh
Q 028600 109 FLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTT-------QTL-----QLSGALIVSTPQDV 176 (207)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~D~IiiD~~~~~~~~~~~~~-------~~~-----~~d~vi~v~~~~~~ 176 (207)
. . .. ......+.++.+..++||+|||||+|.......-+. ... ..|.+++|+++. .
T Consensus 135 ~--~-~d--------p~~~~~~~l~~~~~~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~-~ 202 (272)
T TIGR00064 135 E--G-AD--------PAAVAFDAIQKAKARNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDAT-T 202 (272)
T ss_pred C--C-CC--------HHHHHHHHHHHHHHCCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECC-C
Confidence 1 0 00 011222222222217899999999986542222111 111 278999999997 5
Q ss_pred hHHHHHHHHHHhhhCCCCeeEEEEccccC
Q 028600 177 ALIDARKGITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 177 ~~~~~~~~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
+-+.+..+....+.. ++.|+|+|++|.
T Consensus 203 ~~~~~~~~~~f~~~~--~~~g~IlTKlDe 229 (272)
T TIGR00064 203 GQNALEQAKVFNEAV--GLTGIILTKLDG 229 (272)
T ss_pred CHHHHHHHHHHHhhC--CCCEEEEEccCC
Confidence 666666554444444 456999999885
No 64
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=99.62 E-value=6.1e-15 Score=107.90 Aligned_cols=158 Identities=14% Similarity=0.113 Sum_probs=94.2
Q ss_pred EEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccccCC-cccccc-ccceecccccceeecccccCCC
Q 028600 36 VASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQK-PEVTKD-MKMVPIENYGVKCMSMGFLVPS 113 (207)
Q Consensus 36 v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 113 (207)
|+++.+|+||||++.+||.++++ +|+||.+++--..... ..+.+ ..+... ....+...... ........+.
T Consensus 2 I~~t~~~~GKT~va~~L~~~l~~-~g~~V~~~kP~~~~~~-----~~d~d~~~i~~~~~~~~~~~~~~~-~~~~~~~~p~ 74 (166)
T TIGR00347 2 VTGTDTGVGKTVASSALAAKLKK-AGYSVGYYKPVQTGIE-----KTNSDALLLQNISGTALDWDEVNP-YAFALPLSPH 74 (166)
T ss_pred eecCCCCccHHHHHHHHHHHHHH-CCCcEEEEEeeeeCCC-----CCchHHHHHHHHcCCCCchhccCC-eeeCCCCChH
Confidence 57899999999999999999999 9999999843332211 00000 000000 00000000000 0000000000
Q ss_pred CCcccccchhhHHHHHHHHHhcccCCCCEEEEcCCCCCCc----ch-hhhhhhhcCceEEEeeCCchhhHHHHHHHHHHh
Q 028600 114 SSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGD----AQ-LTTTQTLQLSGALIVSTPQDVALIDARKGITMF 188 (207)
Q Consensus 114 ~~~~~~~~~~~~~~l~~~~~~l~~~~~D~IiiD~~~~~~~----~~-~~~~~~~~~d~vi~v~~~~~~~~~~~~~~l~~l 188 (207)
..............+.+.++.++ ++||+||||+++++.. .. ..-.+....+.+|+|+.+...+++++...++.+
T Consensus 75 ~~~~~~~~~~~~~~i~~~~~~l~-~~~D~viid~~g~~~~~~~~~~~~~dl~~~~~~~vilV~~~~~~~~~~~~~~~~~l 153 (166)
T TIGR00347 75 IAADQEGRPIDLEELSKHLRTLE-QKYDFVLVEGAGGLCVPITEEYTTADLIKLLQLPVILVVRVKLGTINHTLLTVEHA 153 (166)
T ss_pred HHHHHhCCCCCHHHHHHHHHHHH-hcCCEEEEEcCCccccCCCCCCcHHHHHHHhCCCEEEEECCCCcHHHHHHHHHHHH
Confidence 00000000122345777788888 8999999999975431 11 111111235689999999999999999999999
Q ss_pred hhCCCCeeEEEEc
Q 028600 189 SKVQVPVCSFLAQ 201 (207)
Q Consensus 189 ~~~~~~~~g~v~N 201 (207)
++.+.++.|+|+|
T Consensus 154 ~~~~~~i~gvv~N 166 (166)
T TIGR00347 154 RQTGLTLAGVILN 166 (166)
T ss_pred HHCCCCeEEEEeC
Confidence 9999999999998
No 65
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=99.57 E-value=2e-14 Score=98.59 Aligned_cols=113 Identities=27% Similarity=0.287 Sum_probs=73.6
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccccCCccccccccceecccccceeecccccCCC
Q 028600 34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGFLVPS 113 (207)
Q Consensus 34 I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (207)
|++ ++|||+||||++.++|.++++ .|++|+++|+|+ +++...+...... ....+..+...+.
T Consensus 2 i~~-~GkgG~GKTt~a~~la~~l~~-~g~~V~~id~D~--~~~~~~~~~~~~~--------------~~~~i~~g~~~~~ 63 (116)
T cd02034 2 IAI-TGKGGVGKTTIAALLARYLAE-KGKPVLAIDADP--DDLPERLSVEVGE--------------IKLLLVMGMGRPG 63 (116)
T ss_pred EEE-ECCCCCCHHHHHHHHHHHHHH-CCCcEEEEECCc--hhhHHHHhhccCC--------------ceEEEEecccccC
Confidence 445 689999999999999999999 999999999999 3333333222110 0001222221111
Q ss_pred CCcccccchhhHHHHHHHHHhc-ccCCCCEEEEcCCCCCCcchhhhhhhhcCceEEEe
Q 028600 114 SSPVVWRGPMVMSALRKMSREV-DWGNLDILVIDMPPGTGDAQLTTTQTLQLSGALIV 170 (207)
Q Consensus 114 ~~~~~~~~~~~~~~l~~~~~~l-~~~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v 170 (207)
.....+. ....+++++..+ . .+|||+++||+++++ .+....+..+|.+++|
T Consensus 64 ~~g~~~~---~n~~~~~~l~~~~~-~~~~~vivDt~ag~e--~~~~~~~~~~d~vv~v 115 (116)
T cd02034 64 GEGCYCP---ENALLNALLRHLVL-TRDEQVVVDTEAGLE--HLGRGTAEGVDLLVVV 115 (116)
T ss_pred CCCCEeh---hhHHHHHHHHHeEc-cCCCEEEEecHHHHH--HHHhhccccCCEEEEe
Confidence 1111111 112677777775 5 899999999999887 5555556678988887
No 66
>PRK10867 signal recognition particle protein; Provisional
Probab=99.57 E-value=7.6e-14 Score=115.47 Aligned_cols=147 Identities=22% Similarity=0.244 Sum_probs=90.9
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhC-CCeEEEEecCCCCCCccccccccCCccccccccceecccccceeecccc
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKC-QLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGF 109 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~-g~~VlliD~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (207)
+.+|.++ +.+|+||||++++||.+|++ . |++|++||+|.+.+.....+..-. ...++.+.+.+.
T Consensus 100 p~vI~~v-G~~GsGKTTtaakLA~~l~~-~~G~kV~lV~~D~~R~aa~eQL~~~a-------------~~~gv~v~~~~~ 164 (433)
T PRK10867 100 PTVIMMV-GLQGAGKTTTAGKLAKYLKK-KKKKKVLLVAADVYRPAAIEQLKTLG-------------EQIGVPVFPSGD 164 (433)
T ss_pred CEEEEEE-CCCCCcHHHHHHHHHHHHHH-hcCCcEEEEEccccchHHHHHHHHHH-------------hhcCCeEEecCC
Confidence 5677775 79999999999999999999 7 999999999998876543332100 011222222210
Q ss_pred cCCCCCcccccchhhHHHHHHHHHhcccCCCCEEEEcCCCCCCcchhhhh------hhhcCceEEEeeCCchhhHHHHHH
Q 028600 110 LVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTT------QTLQLSGALIVSTPQDVALIDARK 183 (207)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~D~IiiD~~~~~~~~~~~~~------~~~~~d~vi~v~~~~~~~~~~~~~ 183 (207)
.. .......+.++..+...||+|||||++........+. .....+.+++|+++.. . .++.+
T Consensus 165 ---~~--------dp~~i~~~a~~~a~~~~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~-g-q~av~ 231 (433)
T PRK10867 165 ---GQ--------DPVDIAKAALEEAKENGYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMT-G-QDAVN 231 (433)
T ss_pred ---CC--------CHHHHHHHHHHHHHhcCCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEeccc-H-HHHHH
Confidence 00 1122233444444326899999999986542111111 1124678899999742 2 44444
Q ss_pred HHHHhhhCCCCeeEEEEccccCC
Q 028600 184 GITMFSKVQVPVCSFLAQIISSM 206 (207)
Q Consensus 184 ~l~~l~~~~~~~~g~v~N~~~~~ 206 (207)
..+.+.+ ..++.|+|+|+.|..
T Consensus 232 ~a~~F~~-~~~i~giIlTKlD~~ 253 (433)
T PRK10867 232 TAKAFNE-ALGLTGVILTKLDGD 253 (433)
T ss_pred HHHHHHh-hCCCCEEEEeCccCc
Confidence 4555543 356779999999853
No 67
>PRK13768 GTPase; Provisional
Probab=99.56 E-value=5.5e-14 Score=109.48 Aligned_cols=161 Identities=11% Similarity=0.115 Sum_probs=86.4
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccccCCccccccccceecccccceeecccc
Q 028600 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGF 109 (207)
Q Consensus 30 ~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (207)
|+++|.|. ++||+||||++.+++.++++ .|++|++||+|++...+.. .+...+.+.. .... .+. ..
T Consensus 1 ~~~~i~v~-G~~G~GKTt~~~~~~~~l~~-~g~~v~~i~~D~~~~~~~~----~~~~~i~~~~---~~~~----v~~-~~ 66 (253)
T PRK13768 1 MMYIVFFL-GTAGSGKTTLTKALSDWLEE-QGYDVAIVNLDPAVEYLPY----TPDFDVRDYV---TARE----IMK-KY 66 (253)
T ss_pred CcEEEEEE-CCCCccHHHHHHHHHHHHHh-cCCceEEEECCCccccCCC----CCCcchhhhe---eHHH----HHH-Hc
Confidence 35667775 66999999999999999999 9999999999997644321 1111111111 1000 000 00
Q ss_pred cCCCCCcccccchhhHHHHHHHHHhcccCCCCEEEEcCCCCCCcch---h---hhhhhhc--CceEEEeeCCchhhHHHH
Q 028600 110 LVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQ---L---TTTQTLQ--LSGALIVSTPQDVALIDA 181 (207)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~D~IiiD~~~~~~~~~---~---~~~~~~~--~d~vi~v~~~~~~~~~~~ 181 (207)
...++.............+..+.+.+.....|++|+|+|+..+... . ....+.. .+.++++++........-
T Consensus 67 ~l~p~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d 146 (253)
T PRK13768 67 GLGPNGALIASVDLLLTKADEIKEEIESLDADYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSD 146 (253)
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHH
Confidence 0011111111111223444555555543567999999997543211 1 1111222 788999998854321111
Q ss_pred HHHHHHh-----hhCCCCeeEEEEccccC
Q 028600 182 RKGITMF-----SKVQVPVCSFLAQIISS 205 (207)
Q Consensus 182 ~~~l~~l-----~~~~~~~~g~v~N~~~~ 205 (207)
.....++ .+.+.++ -+|+||.|.
T Consensus 147 ~~~~~~l~~~~~~~~~~~~-i~v~nK~D~ 174 (253)
T PRK13768 147 FVSLLLLALSVQLRLGLPQ-IPVLNKADL 174 (253)
T ss_pred HHHHHHHHHHHHHHcCCCE-EEEEEhHhh
Confidence 1111111 1456776 489999874
No 68
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=99.55 E-value=1.7e-13 Score=100.92 Aligned_cols=142 Identities=19% Similarity=0.235 Sum_probs=85.8
Q ss_pred EEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccccCCccccccccceecccccceeecccccCCCCC
Q 028600 36 VASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGFLVPSSS 115 (207)
Q Consensus 36 v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (207)
+..+++|+||||++.++|..+++ .|.+|+++|+|...+.....+..-.. ..++.+.+... ..
T Consensus 4 ~~~G~~G~GKTt~~~~la~~~~~-~g~~v~~i~~D~~~~~~~~~l~~~~~-------------~~~~~~~~~~~---~~- 65 (173)
T cd03115 4 LLVGLQGVGKTTTAAKLALYLKK-KGKKVLLVAADTYRPAAIEQLRVLGE-------------QVGVPVFEEGE---GK- 65 (173)
T ss_pred EEECCCCCCHHHHHHHHHHHHHH-CCCcEEEEEcCCCChHHHHHHHHhcc-------------cCCeEEEecCC---CC-
Confidence 34699999999999999999999 89999999999987665433321100 11222222110 00
Q ss_pred cccccchhhHHHHHHHHHhcccCCCCEEEEcCCCCCCcchhhhhh------hhcCceEEEeeCCchhhHHHHHHHHHHhh
Q 028600 116 PVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQ------TLQLSGALIVSTPQDVALIDARKGITMFS 189 (207)
Q Consensus 116 ~~~~~~~~~~~~l~~~~~~l~~~~~D~IiiD~~~~~~~~~~~~~~------~~~~d~vi~v~~~~~~~~~~~~~~l~~l~ 189 (207)
.....+.+.+....+.+||+||+|+++........+.. ....|.+++|+++. ..........+..+
T Consensus 66 -------~~~~~~~~~~~~~~~~~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~-~~~~~~~~~~~~~~ 137 (173)
T cd03115 66 -------DPVSIAKRAIEHAREENFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAM-TGQDAVNQAKAFNE 137 (173)
T ss_pred -------CHHHHHHHHHHHHHhCCCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECC-CChHHHHHHHHHHh
Confidence 11222333333332279999999999864311111111 12478999999984 34344433333334
Q ss_pred hCCCCeeEEEEccccC
Q 028600 190 KVQVPVCSFLAQIISS 205 (207)
Q Consensus 190 ~~~~~~~g~v~N~~~~ 205 (207)
..+ +.++|+|+.|.
T Consensus 138 ~~~--~~~viltk~D~ 151 (173)
T cd03115 138 ALG--ITGVILTKLDG 151 (173)
T ss_pred hCC--CCEEEEECCcC
Confidence 444 57999999884
No 69
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=99.55 E-value=8.9e-14 Score=115.00 Aligned_cols=148 Identities=21% Similarity=0.259 Sum_probs=88.5
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccccCCccccccccceecccccceeecccccC
Q 028600 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGFLV 111 (207)
Q Consensus 32 k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (207)
+.+.++++.+|+||||++++||.+++...|++|++||+|.+.+...+.+..-.. ..++.+...+.
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~-------------~~gvp~~~~~~-- 163 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQ-------------QVGVPVFALGK-- 163 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHH-------------hcCCceEecCC--
Confidence 445555799999999999999999873289999999999988764433221100 01111111110
Q ss_pred CCCCcccccchhhHHHHHHHHHhcccCCCCEEEEcCCCCCCcchhhhhh------hhcCceEEEeeCCchhhHHHHHHHH
Q 028600 112 PSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQ------TLQLSGALIVSTPQDVALIDARKGI 185 (207)
Q Consensus 112 ~~~~~~~~~~~~~~~~l~~~~~~l~~~~~D~IiiD~~~~~~~~~~~~~~------~~~~d~vi~v~~~~~~~~~~~~~~l 185 (207)
...+ .....+.++.++.+.||+|||||++........+.. ....|.+++|+++.. -.++.+..
T Consensus 164 -~~~P--------~~i~~~al~~~~~~~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~t--gq~~~~~a 232 (428)
T TIGR00959 164 -GQSP--------VEIARRALEYAKENGFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMT--GQDAVNTA 232 (428)
T ss_pred -CCCH--------HHHHHHHHHHHHhcCCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccc--hHHHHHHH
Confidence 0011 122334444442278999999999865322211221 124788999998752 34444444
Q ss_pred HHhhhCCCCeeEEEEccccCC
Q 028600 186 TMFSKVQVPVCSFLAQIISSM 206 (207)
Q Consensus 186 ~~l~~~~~~~~g~v~N~~~~~ 206 (207)
+.+. ..+++.|+|+|+.|..
T Consensus 233 ~~f~-~~v~i~giIlTKlD~~ 252 (428)
T TIGR00959 233 KTFN-ERLGLTGVVLTKLDGD 252 (428)
T ss_pred HHHH-hhCCCCEEEEeCccCc
Confidence 4444 2246679999999853
No 70
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=99.53 E-value=3e-13 Score=89.64 Aligned_cols=94 Identities=38% Similarity=0.528 Sum_probs=75.3
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccccCCccccccccceecccccceeecccccCCC
Q 028600 34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGFLVPS 113 (207)
Q Consensus 34 I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (207)
+++ ++++|+||||++.+||..+++ .|++|+++|
T Consensus 2 ~~~-~g~~G~Gktt~~~~l~~~l~~-~g~~v~~~~--------------------------------------------- 34 (99)
T cd01983 2 IVV-TGKGGVGKTTLAANLAAALAK-RGKRVLLID--------------------------------------------- 34 (99)
T ss_pred EEE-ECCCCCCHHHHHHHHHHHHHH-CCCeEEEEC---------------------------------------------
Confidence 455 566699999999999999999 999999999
Q ss_pred CCcccccchhhHHHHHHHHHhcccCCCCEEEEcCCCCCCcchh-hhhhhhcCceEEEeeCCchhhHHHHHHHHHHh---h
Q 028600 114 SSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQL-TTTQTLQLSGALIVSTPQDVALIDARKGITMF---S 189 (207)
Q Consensus 114 ~~~~~~~~~~~~~~l~~~~~~l~~~~~D~IiiD~~~~~~~~~~-~~~~~~~~d~vi~v~~~~~~~~~~~~~~l~~l---~ 189 (207)
|+||+|+++..++... .......+|.+++|++++..++....+.+++. .
T Consensus 35 ---------------------------d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~~~~~~~~~~~~~~~~~~~~~ 87 (99)
T cd01983 35 ---------------------------DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTTPEALAVLGARRLTEVVLELA 87 (99)
T ss_pred ---------------------------CEEEEeCCCCccchhhhhhhhhhhCCEEEEecCCchhhHHHHHHHHHHHHHhh
Confidence 9999999998775431 13455579999999999999999998885433 3
Q ss_pred hCCCCeeEEEEc
Q 028600 190 KVQVPVCSFLAQ 201 (207)
Q Consensus 190 ~~~~~~~g~v~N 201 (207)
..+....++++|
T Consensus 88 ~~~~~~~~vv~N 99 (99)
T cd01983 88 IEGLRPVGVVVN 99 (99)
T ss_pred ccCCceEEEEeC
Confidence 334556778876
No 71
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=99.52 E-value=2.1e-13 Score=112.32 Aligned_cols=147 Identities=18% Similarity=0.175 Sum_probs=89.0
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccccCCccccccccceecccccceeeccccc
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGFL 110 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (207)
+.+|+++ +.+|+||||++++||.++++ .|++|++|++|++.+.....+...... .++.+....
T Consensus 100 ~~vi~lv-G~~GvGKTTtaaKLA~~l~~-~G~kV~lV~~D~~R~aA~eQLk~~a~~-------------~~vp~~~~~-- 162 (429)
T TIGR01425 100 QNVIMFV-GLQGSGKTTTCTKLAYYYQR-KGFKPCLVCADTFRAGAFDQLKQNATK-------------ARIPFYGSY-- 162 (429)
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHHHH-CCCCEEEEcCcccchhHHHHHHHHhhc-------------cCCeEEeec--
Confidence 5778885 68999999999999999998 999999999999887554443211100 011111000
Q ss_pred CCCCCcccccchhhHHHHHHHHHhcccCCCCEEEEcCCCCCCcchhhhhh------hhcCceEEEeeCCchhhHHHHHHH
Q 028600 111 VPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQ------TLQLSGALIVSTPQDVALIDARKG 184 (207)
Q Consensus 111 ~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~D~IiiD~~~~~~~~~~~~~~------~~~~d~vi~v~~~~~~~~~~~~~~ 184 (207)
... .......+.++.++...||+|||||++.......-+.. ....|.+++|+++.. +- .....
T Consensus 163 -~~~--------dp~~i~~~~l~~~~~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~-Gq-~a~~~ 231 (429)
T TIGR01425 163 -TES--------DPVKIASEGVEKFKKENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSI-GQ-AAEAQ 231 (429)
T ss_pred -CCC--------CHHHHHHHHHHHHHhCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEecccc-Ch-hHHHH
Confidence 000 11223334455554268999999999865422111111 113678999998753 22 22333
Q ss_pred HHHhhhCCCCeeEEEEccccCC
Q 028600 185 ITMFSKVQVPVCSFLAQIISSM 206 (207)
Q Consensus 185 l~~l~~~~~~~~g~v~N~~~~~ 206 (207)
.+.+.+ ..++.|+|+|+.|..
T Consensus 232 a~~F~~-~~~~~g~IlTKlD~~ 252 (429)
T TIGR01425 232 AKAFKD-SVDVGSVIITKLDGH 252 (429)
T ss_pred HHHHHh-ccCCcEEEEECccCC
Confidence 344443 235679999999853
No 72
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=99.52 E-value=2.9e-13 Score=108.38 Aligned_cols=147 Identities=18% Similarity=0.175 Sum_probs=88.6
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccccCCccccccccceecccccceeecccc
Q 028600 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGF 109 (207)
Q Consensus 30 ~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (207)
.+++|++++ ..|+||||++.+||..++. .|++|+++|+|++.......+.. + ....++.+++...
T Consensus 113 ~~~vi~lvG-pnGsGKTTt~~kLA~~l~~-~g~~V~Li~~D~~r~~a~eql~~-----~--------a~~~~i~~~~~~~ 177 (318)
T PRK10416 113 KPFVILVVG-VNGVGKTTTIGKLAHKYKA-QGKKVLLAAGDTFRAAAIEQLQV-----W--------GERVGVPVIAQKE 177 (318)
T ss_pred CCeEEEEEC-CCCCcHHHHHHHHHHHHHh-cCCeEEEEecCccchhhHHHHHH-----H--------HHHcCceEEEeCC
Confidence 478999985 9999999999999999999 99999999999866431111100 0 0011222222210
Q ss_pred cCCCCCcccccchhhHHHHHHHHHhcccCCCCEEEEcCCCCCCcchhhhh---hh---------hcCceEEEeeCCchhh
Q 028600 110 LVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTT---QT---------LQLSGALIVSTPQDVA 177 (207)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~D~IiiD~~~~~~~~~~~~~---~~---------~~~d~vi~v~~~~~~~ 177 (207)
. ..+ ....++.+..... ++||+|||||||.......-+. .+ ...+.+++|+++. .+
T Consensus 178 --~-~dp-------a~~v~~~l~~~~~-~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~-~g 245 (318)
T PRK10416 178 --G-ADP-------ASVAFDAIQAAKA-RGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDAT-TG 245 (318)
T ss_pred --C-CCH-------HHHHHHHHHHHHh-CCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECC-CC
Confidence 0 000 1122233333344 8999999999986542111001 00 1357788998888 45
Q ss_pred HHHHHHHHHHhhhCCCCeeEEEEccccC
Q 028600 178 LIDARKGITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 178 ~~~~~~~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
.+.+.++....+.. ++.|+|+|+.|.
T Consensus 246 ~~~~~~a~~f~~~~--~~~giIlTKlD~ 271 (318)
T PRK10416 246 QNALSQAKAFHEAV--GLTGIILTKLDG 271 (318)
T ss_pred hHHHHHHHHHHhhC--CCCEEEEECCCC
Confidence 55665554433333 566999999985
No 73
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=99.52 E-value=6.3e-13 Score=101.65 Aligned_cols=47 Identities=34% Similarity=0.347 Sum_probs=43.8
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCcc
Q 028600 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVP 77 (207)
Q Consensus 30 ~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~ 77 (207)
|++++.+.++|||+||||++++||.++++ .|++|++||+|++++++.
T Consensus 1 m~~i~~i~~~KGGvGKSt~a~~la~~l~~-~g~~vl~iD~D~~n~~~~ 47 (241)
T PRK13886 1 MAKIHMVLQGKGGVGKSFIAATIAQYKAS-KGQKPLCIDTDPVNATFE 47 (241)
T ss_pred CCeEEEEecCCCCCcHHHHHHHHHHHHHh-CCCCEEEEECCCCCchhh
Confidence 47899999999999999999999999999 999999999999987654
No 74
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=99.49 E-value=5.8e-13 Score=107.84 Aligned_cols=143 Identities=16% Similarity=0.144 Sum_probs=92.4
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccccCCccccccccceecccccceeecccc
Q 028600 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGF 109 (207)
Q Consensus 30 ~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (207)
.+++|++++. +|+||||+++.||..+.. .|++|+++++|++.......+..-. ...++.+...
T Consensus 240 ~~~vI~LVGp-tGvGKTTTiaKLA~~L~~-~GkkVglI~aDt~RiaAvEQLk~ya-------------e~lgipv~v~-- 302 (436)
T PRK11889 240 EVQTIALIGP-TGVGKTTTLAKMAWQFHG-KKKTVGFITTDHSRIGTVQQLQDYV-------------KTIGFEVIAV-- 302 (436)
T ss_pred CCcEEEEECC-CCCcHHHHHHHHHHHHHH-cCCcEEEEecCCcchHHHHHHHHHh-------------hhcCCcEEec--
Confidence 3678988755 999999999999999998 9999999999987633222221100 0011111110
Q ss_pred cCCCCCcccccchhhHHHHHHHHHhccc-CCCCEEEEcCCCCCCcchhhhhhh------hcCceEEEeeCCchhhHHHHH
Q 028600 110 LVPSSSPVVWRGPMVMSALRKMSREVDW-GNLDILVIDMPPGTGDAQLTTTQT------LQLSGALIVSTPQDVALIDAR 182 (207)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~l~~~~~~l~~-~~~D~IiiD~~~~~~~~~~~~~~~------~~~d~vi~v~~~~~~~~~~~~ 182 (207)
.....+.+.+..++. .+||+|||||++........+..+ ...+.+++|+++.. .-+++.
T Consensus 303 -------------~d~~~L~~aL~~lk~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATt-k~~d~~ 368 (436)
T PRK11889 303 -------------RDEAAMTRALTYFKEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASM-KSKDMI 368 (436)
T ss_pred -------------CCHHHHHHHHHHHHhccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCcc-ChHHHH
Confidence 113456667776651 369999999997543222111111 12467888877653 446667
Q ss_pred HHHHHhhhCCCCeeEEEEccccC
Q 028600 183 KGITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 183 ~~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
..++.+... ++-++|+++.|.
T Consensus 369 ~i~~~F~~~--~idglI~TKLDE 389 (436)
T PRK11889 369 EIITNFKDI--HIDGIVFTKFDE 389 (436)
T ss_pred HHHHHhcCC--CCCEEEEEcccC
Confidence 788888774 556999999884
No 75
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=99.47 E-value=7.4e-13 Score=109.86 Aligned_cols=146 Identities=21% Similarity=0.253 Sum_probs=91.0
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccccCCccccccccceecccccceeecccc
Q 028600 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGF 109 (207)
Q Consensus 30 ~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (207)
.+.+|.++ +.+|+||||++++||.++++ .|++|++|++|...+.....+..-. ...++.+....
T Consensus 94 ~p~vI~lv-G~~GsGKTTtaakLA~~L~~-~g~kV~lV~~D~~R~aa~eQL~~la-------------~~~gvp~~~~~- 157 (437)
T PRK00771 94 KPQTIMLV-GLQGSGKTTTAAKLARYFKK-KGLKVGLVAADTYRPAAYDQLKQLA-------------EKIGVPFYGDP- 157 (437)
T ss_pred CCeEEEEE-CCCCCcHHHHHHHHHHHHHH-cCCeEEEecCCCCCHHHHHHHHHHH-------------HHcCCcEEecC-
Confidence 36777776 78999999999999999999 9999999999997764322221100 00011111000
Q ss_pred cCCCCCcccccchhhHHHHHHHHHhcccCCCCEEEEcCCCCCCcchh------hhhhhhcCceEEEeeCCchhhHHHHHH
Q 028600 110 LVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQL------TTTQTLQLSGALIVSTPQDVALIDARK 183 (207)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~D~IiiD~~~~~~~~~~------~~~~~~~~d~vi~v~~~~~~~~~~~~~ 183 (207)
. .......+.+.++.++ .+|+|||||++....... .+......|.+++|+++... .++.+
T Consensus 158 -----~-----~~d~~~i~~~al~~~~--~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~g--q~av~ 223 (437)
T PRK00771 158 -----D-----NKDAVEIAKEGLEKFK--KADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIG--QQAKN 223 (437)
T ss_pred -----C-----ccCHHHHHHHHHHHhh--cCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEecccc--HHHHH
Confidence 0 0112344566676664 469999999986542211 22333368999999998653 23333
Q ss_pred HHHHhhhCCCCeeEEEEccccCC
Q 028600 184 GITMFSKVQVPVCSFLAQIISSM 206 (207)
Q Consensus 184 ~l~~l~~~~~~~~g~v~N~~~~~ 206 (207)
..+.+.+ ..++.|+|+|++|..
T Consensus 224 ~a~~F~~-~l~i~gvIlTKlD~~ 245 (437)
T PRK00771 224 QAKAFHE-AVGIGGIIITKLDGT 245 (437)
T ss_pred HHHHHHh-cCCCCEEEEecccCC
Confidence 3333332 256779999999853
No 76
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=99.46 E-value=1.9e-12 Score=104.54 Aligned_cols=143 Identities=15% Similarity=0.212 Sum_probs=89.5
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccccCCccccccccceecccccceeecccc
Q 028600 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGF 109 (207)
Q Consensus 30 ~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (207)
.+++|++++. .|+||||++++||..+.+ .|++|.+|++|++.+.....+...... .++.+..
T Consensus 205 ~~~ii~lvGp-tGvGKTTt~akLA~~l~~-~g~~V~lItaDtyR~gAveQLk~yae~-------------lgvpv~~--- 266 (407)
T PRK12726 205 NHRIISLIGQ-TGVGKTTTLVKLGWQLLK-QNRTVGFITTDTFRSGAVEQFQGYADK-------------LDVELIV--- 266 (407)
T ss_pred CCeEEEEECC-CCCCHHHHHHHHHHHHHH-cCCeEEEEeCCccCccHHHHHHHHhhc-------------CCCCEEe---
Confidence 3789999876 599999999999999988 899999999999875432222111000 0111000
Q ss_pred cCCCCCcccccchhhHHHHHHHHHhccc-CCCCEEEEcCCCCCCcchhhhhhh------hcCceEEEeeCCchhhHHHHH
Q 028600 110 LVPSSSPVVWRGPMVMSALRKMSREVDW-GNLDILVIDMPPGTGDAQLTTTQT------LQLSGALIVSTPQDVALIDAR 182 (207)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~l~~~~~~l~~-~~~D~IiiD~~~~~~~~~~~~~~~------~~~d~vi~v~~~~~~~~~~~~ 182 (207)
......+.+.++.++. ..||+|||||++.......-+..+ ...+.+++|..+. ....++.
T Consensus 267 ------------~~dp~dL~~al~~l~~~~~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag-~~~~d~~ 333 (407)
T PRK12726 267 ------------ATSPAELEEAVQYMTYVNCVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSG-MKSADVM 333 (407)
T ss_pred ------------cCCHHHHHHHHHHHHhcCCCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCc-ccHHHHH
Confidence 0113456666666531 579999999997543211111111 1335667777664 3455566
Q ss_pred HHHHHhhhCCCCeeEEEEccccC
Q 028600 183 KGITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 183 ~~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
++++.+... ++-|+|+++.|.
T Consensus 334 ~i~~~f~~l--~i~glI~TKLDE 354 (407)
T PRK12726 334 TILPKLAEI--PIDGFIITKMDE 354 (407)
T ss_pred HHHHhcCcC--CCCEEEEEcccC
Confidence 666666554 556999999985
No 77
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=99.45 E-value=1.1e-12 Score=100.46 Aligned_cols=163 Identities=10% Similarity=0.042 Sum_probs=96.5
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccccCCccccccccceecccccceeecccccCCC
Q 028600 34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGFLVPS 113 (207)
Q Consensus 34 I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (207)
|.|+++..|+|||++++.|+++|.+ +|.+|.++--=..++. ... .+.+..+ ......... .. ...++.....
T Consensus 2 i~I~~t~t~~GKT~vs~~L~~~l~~-~g~~v~~~KPv~~g~~--~~~-~~~d~~~--~~~~~~~~~-~~-~~~~~~~~~~ 73 (222)
T PRK00090 2 LFVTGTDTDVGKTVVTAALAQALRE-AGYSVAGYKPVQSGCE--ETD-RNGDALA--LQRLSGLPL-DY-EDVNPYRFEE 73 (222)
T ss_pred EEEEeCCCCcCHHHHHHHHHHHHHH-cCCceEEEeeEecCCC--CCC-CcHHHHH--HHHHcCCCC-Ch-hhcCceeeCC
Confidence 6788999999999999999999999 9999998642111110 000 0000000 000000000 00 0000111111
Q ss_pred CCc-----ccccchhhHHHHHHHHHhcccCCCCEEEEcCCCCCCcchh----hhhhh-hcCceEEEeeCCchhhHHHHHH
Q 028600 114 SSP-----VVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQL----TTTQT-LQLSGALIVSTPQDVALIDARK 183 (207)
Q Consensus 114 ~~~-----~~~~~~~~~~~l~~~~~~l~~~~~D~IiiD~~~~~~~~~~----~~~~~-~~~d~vi~v~~~~~~~~~~~~~ 183 (207)
... ...........+.+.++.++ ++||+||||+++++..... ....+ ..-..+++|+.++..++.++..
T Consensus 74 ~~sp~~a~~~~~~~~~~~~i~~~~~~l~-~~~D~viIEg~gg~~~~~~~~~~~adl~~~l~~pvilV~~~~~~~i~~~~~ 152 (222)
T PRK00090 74 PLSPHLAAALEGVAIDLEKISAALRRLA-QQYDLVLVEGAGGLLVPLTEDLTLADLAKQLQLPVILVVGVKLGCINHTLL 152 (222)
T ss_pred CCCHHHHHHHhCCCCCHHHHHHHHHHHH-hhCCEEEEECCCceeccCCCCCcHHHHHHHhCCCEEEEECCCCcHHHHHHH
Confidence 100 00001123466777787788 8999999999986532111 01011 1124589999999989999999
Q ss_pred HHHHhhhCCCCeeEEEEccccC
Q 028600 184 GITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 184 ~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
.++.+++.+.++.|+|+|+++.
T Consensus 153 ~i~~l~~~~~~i~gvIlN~~~~ 174 (222)
T PRK00090 153 TLEAIRARGLPLAGWVANGIPP 174 (222)
T ss_pred HHHHHHHCCCCeEEEEEccCCC
Confidence 9999988899999999999874
No 78
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=99.39 E-value=7.3e-12 Score=93.80 Aligned_cols=146 Identities=21% Similarity=0.234 Sum_probs=88.2
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccccCCccccccccceecccccceeeccccc
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGFL 110 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (207)
+++|++. +-.|+||||+++.||+.+.. +|++|++|.+|.........+..- ....++.+....
T Consensus 1 p~vi~lv-GptGvGKTTt~aKLAa~~~~-~~~~v~lis~D~~R~ga~eQL~~~-------------a~~l~vp~~~~~-- 63 (196)
T PF00448_consen 1 PKVIALV-GPTGVGKTTTIAKLAARLKL-KGKKVALISADTYRIGAVEQLKTY-------------AEILGVPFYVAR-- 63 (196)
T ss_dssp SEEEEEE-ESTTSSHHHHHHHHHHHHHH-TT--EEEEEESTSSTHHHHHHHHH-------------HHHHTEEEEESS--
T ss_pred CEEEEEE-CCCCCchHhHHHHHHHHHhh-ccccceeecCCCCCccHHHHHHHH-------------HHHhccccchhh--
Confidence 4788886 66799999999999999999 799999999998775433222110 011111111110
Q ss_pred CCCCCcccccchhhHHHHHHHHHhcccCCCCEEEEcCCCCCCcchh------hhhhhhcCceEEEeeCCchhhHHHHHHH
Q 028600 111 VPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQL------TTTQTLQLSGALIVSTPQDVALIDARKG 184 (207)
Q Consensus 111 ~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~D~IiiD~~~~~~~~~~------~~~~~~~~d~vi~v~~~~~~~~~~~~~~ 184 (207)
.. ....+.+.+.++.++.++||+|+|||++....... .+......+.+++|+++... .+.+...
T Consensus 64 ----~~-----~~~~~~~~~~l~~~~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~-~~~~~~~ 133 (196)
T PF00448_consen 64 ----TE-----SDPAEIAREALEKFRKKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMG-QEDLEQA 133 (196)
T ss_dssp ----TT-----SCHHHHHHHHHHHHHHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGG-GHHHHHH
T ss_pred ----cc-----hhhHHHHHHHHHHHhhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccC-hHHHHHH
Confidence 00 01234455566655437899999999964321111 11112246788888888774 4555566
Q ss_pred HHHhhhCCCCeeEEEEccccC
Q 028600 185 ITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 185 l~~l~~~~~~~~g~v~N~~~~ 205 (207)
....+..+.. ++|++|.|.
T Consensus 134 ~~~~~~~~~~--~lIlTKlDe 152 (196)
T PF00448_consen 134 LAFYEAFGID--GLILTKLDE 152 (196)
T ss_dssp HHHHHHSSTC--EEEEESTTS
T ss_pred HHHhhcccCc--eEEEEeecC
Confidence 6666666554 899999984
No 79
>COG0132 BioD Dethiobiotin synthetase [Coenzyme metabolism]
Probab=99.37 E-value=3.1e-11 Score=91.20 Aligned_cols=169 Identities=12% Similarity=0.082 Sum_probs=105.9
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccccCCcccccc-ccceecccccceee--c
Q 028600 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKD-MKMVPIENYGVKCM--S 106 (207)
Q Consensus 30 ~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~ 106 (207)
+++.+.|+++-.|+|||.+++.|++++.. .|++|...-.=..+.. ..-..++...+... .........+.+.+ |
T Consensus 1 m~~~~fVtGTDT~VGKTv~S~aL~~~l~~-~g~~~~~~KPVqsG~~--~~~~~~D~~~l~~~~~~~~~~~~~~py~f~~P 77 (223)
T COG0132 1 MMKRFFVTGTDTGVGKTVVSAALAQALKQ-QGYSVAGYKPVQTGSE--ETAENSDALVLQRLSGLDLSYELINPYRFKEP 77 (223)
T ss_pred CCceEEEEeCCCCccHHHHHHHHHHHHHh-CCCeeEEECceeeCCC--CCCCCchHHHHHHhcCCCcccccccceecCCC
Confidence 47899999999999999999999999999 9999998843222111 00000000000000 00000011111111 1
Q ss_pred ccccCCCCCcccccchhhHHHHHHHHHhcccCCCCEEEEcCCCCCC----cc-hhhhhhhhcCceEEEeeCCchhhHHHH
Q 028600 107 MGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTG----DA-QLTTTQTLQLSGALIVSTPQDVALIDA 181 (207)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~D~IiiD~~~~~~----~~-~~~~~~~~~~d~vi~v~~~~~~~~~~~ 181 (207)
..+......+ ......+.+..-+..+. .+||+|||.+.+++- +. .+.-.+....-.+|+|+.....+++++
T Consensus 78 ~sPhlAa~~e---g~~I~~~~l~~~l~~l~-~~~d~vlVEGAGGl~vPl~~~~~~~D~~~~~~lpvILV~~~~LGtINHt 153 (223)
T COG0132 78 LSPHLAAELE---GRTIDLEKLSQGLRQLL-KKYDLVLVEGAGGLLVPLTEEYTFADLAVQLQLPVILVVGIKLGTINHT 153 (223)
T ss_pred CCcHHHHhhc---CCcccHHHHHHHHHhhh-cccCEEEEeCCCceeeecCCcccHHHHHHHcCCCEEEEecCCccHHHHH
Confidence 1111111111 11245677777777888 799999999998752 21 111111223457999999999999999
Q ss_pred HHHHHHhhhCCCCeeEEEEccccC
Q 028600 182 RKGITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 182 ~~~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
...++.+++.|+++.|+|+|++..
T Consensus 154 lLt~eal~~~gl~l~G~I~n~~~~ 177 (223)
T COG0132 154 LLTVEALRARGLPLAGWVANGINP 177 (223)
T ss_pred HHHHHHHHHCCCCEEEEEEccCCC
Confidence 999999999999999999998864
No 80
>KOG2825 consensus Putative arsenite-translocating ATPase [Inorganic ion transport and metabolism]
Probab=99.35 E-value=7.7e-12 Score=94.43 Aligned_cols=168 Identities=18% Similarity=0.199 Sum_probs=103.4
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccccCCc------ccccc--ccceecccccce
Q 028600 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKP------EVTKD--MKMVPIENYGVK 103 (207)
Q Consensus 32 k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~~~~------~~~~~--~~~~~~~~~~~~ 103 (207)
....|.++|||+||||.+..||..+|+ .+.+|++|-.||.. +++..|+-+-.. +..+. -++.|. ..+.
T Consensus 19 lKwifVGGKGGVGKTTcs~sLAvqla~-~r~~vLiISTDPAH-NlSDAF~qkftk~pt~V~Gf~nLfAMEIDp~--~e~~ 94 (323)
T KOG2825|consen 19 LKWIFVGGKGGVGKTTCSCSLAVQLAK-VRESVLIISTDPAH-NLSDAFSQKFTKTPTKVEGFENLFAMEIDPN--VEMG 94 (323)
T ss_pred eeEEEEcCcCCcCccchhhHHHHHHhc-cCCceEEeecCccc-chHHHHHHHhcCCCccccChhhheeeecCCc--hhhh
Confidence 344555999999999999999999999 89999999999965 666655533211 11110 011110 0111
Q ss_pred eecccccCC-CCC-----------cccccchhhHHHHHHHHHhcccCCCCEEEEcCCCCCCcch-h--------------
Q 028600 104 CMSMGFLVP-SSS-----------PVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQ-L-------------- 156 (207)
Q Consensus 104 ~~~~~~~~~-~~~-----------~~~~~~~~~~~~l~~~~~~l~~~~~D~IiiD~~~~~~~~~-~-------------- 156 (207)
-++.-.... .+. ..-+++-+..-.+.++++.++.-+||.||+||.|.-..-. +
T Consensus 95 ~~~~m~~~~~~n~~~~g~g~l~e~~~~~Pgideamsfae~~klvk~~~F~~vVFDTAPTGHTLRlL~fP~~lek~lgKl~ 174 (323)
T KOG2825|consen 95 DMPEMFGNAANNEGSDGKGMLQELANAFPGIDEAMSFAEVMKLVKGMNFDVVVFDTAPTGHTLRLLQFPTTLEKGLGKLL 174 (323)
T ss_pred hhHHHhhcccccccccchhHHHHHHhcCCChhHHHhHHHHHHHhhccccceEEeccCCCcceehhhccchHHHHHHHHHH
Confidence 111000000 000 0011223334455566666655789999999998421000 0
Q ss_pred --------------hhhhh----------------------------hcCceEEEeeCCchhhHHHHHHHHHHhhhCCCC
Q 028600 157 --------------TTTQT----------------------------LQLSGALIVSTPQDVALIDARKGITMFSKVQVP 194 (207)
Q Consensus 157 --------------~~~~~----------------------------~~~d~vi~v~~~~~~~~~~~~~~l~~l~~~~~~ 194 (207)
.+..+ ..+.-.|+|+-++..++..+.+.++.+.+.+++
T Consensus 175 ~l~~k~~pm~sq~~sm~g~~~~~~~~l~~kle~~~~~i~~vn~qFkdpd~TtFVcVcI~eflslyEteRliqeL~k~~id 254 (323)
T KOG2825|consen 175 SLKNKIGPMLSQMGSMFGMEDAGADDLAGKLEELLEVIEKVNEQFKDPDCTTFVCVCIAEFLSLYETERLIQELAKQGID 254 (323)
T ss_pred HHHHHHHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHHHcCCCCCceEEEEEHHHHHhHHHHHHHHHHHHhcCCc
Confidence 00000 034567899999999999999999999999999
Q ss_pred eeEEEEccc
Q 028600 195 VCSFLAQII 203 (207)
Q Consensus 195 ~~g~v~N~~ 203 (207)
+=.+|+|+.
T Consensus 255 thnIIVNQL 263 (323)
T KOG2825|consen 255 THNIIVNQL 263 (323)
T ss_pred ccceeeeec
Confidence 988999975
No 81
>PRK14974 cell division protein FtsY; Provisional
Probab=99.33 E-value=2.5e-11 Score=97.63 Aligned_cols=147 Identities=18% Similarity=0.188 Sum_probs=85.6
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccccCCccccccccceecccccceeecccc
Q 028600 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGF 109 (207)
Q Consensus 30 ~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (207)
.+++|+|+ +..|+||||++++||..+.+ .|++|+++++|.........+..- ....++.+++..
T Consensus 139 ~~~vi~~~-G~~GvGKTTtiakLA~~l~~-~g~~V~li~~Dt~R~~a~eqL~~~-------------a~~lgv~v~~~~- 202 (336)
T PRK14974 139 KPVVIVFV-GVNGTGKTTTIAKLAYYLKK-NGFSVVIAAGDTFRAGAIEQLEEH-------------AERLGVKVIKHK- 202 (336)
T ss_pred CCeEEEEE-cCCCCCHHHHHHHHHHHHHH-cCCeEEEecCCcCcHHHHHHHHHH-------------HHHcCCceeccc-
Confidence 36788885 69999999999999999998 999999999997654322222100 000111111100
Q ss_pred cCCCCCcccccchhhHHHHHHHHHhcccCCCCEEEEcCCCCCCcchhhhhhh------hcCceEEEeeCCchhhHHHHHH
Q 028600 110 LVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQT------LQLSGALIVSTPQDVALIDARK 183 (207)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~D~IiiD~~~~~~~~~~~~~~~------~~~d~vi~v~~~~~~~~~~~~~ 183 (207)
. +......+.+.++..+..+||+|||||++.......-+..+ ...|.+++|+++.. +- +..+
T Consensus 203 -----~-----g~dp~~v~~~ai~~~~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~-g~-d~~~ 270 (336)
T PRK14974 203 -----Y-----GADPAAVAYDAIEHAKARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALA-GN-DAVE 270 (336)
T ss_pred -----C-----CCCHHHHHHHHHHHHHhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeecccc-ch-hHHH
Confidence 0 00112223344443332789999999997654222212221 14688899988744 32 3333
Q ss_pred HHHHhhhCCCCeeEEEEccccC
Q 028600 184 GITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 184 ~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
..+.+.+ ..++-|+|+|+.|.
T Consensus 271 ~a~~f~~-~~~~~giIlTKlD~ 291 (336)
T PRK14974 271 QAREFNE-AVGIDGVILTKVDA 291 (336)
T ss_pred HHHHHHh-cCCCCEEEEeeecC
Confidence 3333332 23456999999984
No 82
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=99.32 E-value=3e-11 Score=98.96 Aligned_cols=140 Identities=14% Similarity=0.165 Sum_probs=84.5
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccccCCccccccccceecccccceeeccccc
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGFL 110 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (207)
+++|+| .+.+|+||||++++||..+....|++|+++|+|.+.....+.+.... ...++.+..
T Consensus 223 ~~vi~l-vGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yA-------------e~lgvp~~~---- 284 (432)
T PRK12724 223 RKVVFF-VGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYA-------------DTMGMPFYP---- 284 (432)
T ss_pred CeEEEE-ECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHH-------------HhcCCCeee----
Confidence 456666 58999999999999998774338999999999998765433222110 000111000
Q ss_pred CCCCCcccccchhhHHHHHHHHHhcccCCCCEEEEcCCCCCCcchhhhhhhh---------cCceEEEeeCCchhhHHHH
Q 028600 111 VPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQTL---------QLSGALIVSTPQDVALIDA 181 (207)
Q Consensus 111 ~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~D~IiiD~~~~~~~~~~~~~~~~---------~~d~vi~v~~~~~~~~~~~ 181 (207)
......+.+.+. + .+||+|||||++........+..+. ....+++|+++.. ...++
T Consensus 285 -----------~~~~~~l~~~l~--~-~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~-~~~~~ 349 (432)
T PRK12724 285 -----------VKDIKKFKETLA--R-DGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTS-SYHHT 349 (432)
T ss_pred -----------hHHHHHHHHHHH--h-CCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCC-CHHHH
Confidence 001223333333 2 7899999999864321111122211 1235777777765 45677
Q ss_pred HHHHHHhhhCCCCeeEEEEccccC
Q 028600 182 RKGITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 182 ~~~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
...++.++..+. -|+|+++.|-
T Consensus 350 ~~~~~~f~~~~~--~glIlTKLDE 371 (432)
T PRK12724 350 LTVLKAYESLNY--RRILLTKLDE 371 (432)
T ss_pred HHHHHHhcCCCC--CEEEEEcccC
Confidence 777777766654 4899999884
No 83
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=99.31 E-value=4.7e-11 Score=100.20 Aligned_cols=142 Identities=16% Similarity=0.184 Sum_probs=83.8
Q ss_pred CCCeEEEEEeCCCCCcHHHHHHHHHHHHHHhC-CCeEEEEecCCCCCCccccccccCCccccccccceecccccceeecc
Q 028600 29 GVKDVIAVASGKGGVGKSTTAVNLAVALASKC-QLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSM 107 (207)
Q Consensus 29 ~~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~-g~~VlliD~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (207)
+.+++|+|+ +.+|+||||++.+||..+++.. |++|.++++|.+.....+.+..... ..++.+.
T Consensus 348 ~~G~vIaLV-GPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~-------------iLgv~v~-- 411 (559)
T PRK12727 348 ERGGVIALV-GPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGR-------------QLGIAVH-- 411 (559)
T ss_pred cCCCEEEEE-CCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhc-------------ccCceeE--
Confidence 347899998 5589999999999999988722 5899999999876432222211000 0001000
Q ss_pred cccCCCCCcccccchhhHHHHHHHHHhcccCCCCEEEEcCCCCCCcchhh------hhhhhcCceEEEeeCCchhhHHHH
Q 028600 108 GFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLT------TTQTLQLSGALIVSTPQDVALIDA 181 (207)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~D~IiiD~~~~~~~~~~~------~~~~~~~d~vi~v~~~~~~~~~~~ 181 (207)
.......+...++.+ .+||+||||+++........ +.... ....++|+.... +..++
T Consensus 412 -------------~a~d~~~L~~aL~~l--~~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~-~~a~lLVLpAts-s~~Dl 474 (559)
T PRK12727 412 -------------EADSAESLLDLLERL--RDYKLVLIDTAGMGQRDRALAAQLNWLRAAR-QVTSLLVLPANA-HFSDL 474 (559)
T ss_pred -------------ecCcHHHHHHHHHHh--ccCCEEEecCCCcchhhHHHHHHHHHHHHhh-cCCcEEEEECCC-ChhHH
Confidence 001134566677666 57999999999753211110 11111 123333333332 45556
Q ss_pred HHHHHHhhhCCCCeeEEEEccccC
Q 028600 182 RKGITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 182 ~~~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
.+.++.+... ...|+|+||+|.
T Consensus 475 ~eii~~f~~~--~~~gvILTKlDE 496 (559)
T PRK12727 475 DEVVRRFAHA--KPQGVVLTKLDE 496 (559)
T ss_pred HHHHHHHHhh--CCeEEEEecCcC
Confidence 6667776654 456999999985
No 84
>PRK12374 putative dithiobiotin synthetase; Provisional
Probab=99.31 E-value=1.1e-10 Score=89.93 Aligned_cols=163 Identities=15% Similarity=0.121 Sum_probs=100.1
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccccCCccccc--cccce-----ecccccce
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTK--DMKMV-----PIENYGVK 103 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~~~~~~~~--~~~~~-----~~~~~~~~ 103 (207)
+|.|.|+++..|+|||++++.|+++|.+ +|.+|.++- |-....... + ....+ ...+. +.....+.
T Consensus 2 ~~~ifIt~t~t~vGKT~vt~~L~~~l~~-~g~~v~~~K--Pi~~g~~~~-~----~~~~~~D~~~l~~~~~~~~~~~~~~ 73 (231)
T PRK12374 2 LKRFFITGTDTSVGKTVVSRALLQALAS-QGKTVAGYK--PVAKGSKET-P----EGLRNKDALVLQSVSSIELPYEAVN 73 (231)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHH-CCCeEEEEC--ccccCCccC-C----CCCchHHHHHHHHhcCCCCCHHhcc
Confidence 5679999999999999999999999999 999999984 333221100 0 00001 00000 00000010
Q ss_pred eecccccCCCCCcccccchhhHHHHHHHHHhcccCCCCEEEEcCCCCCCcch-----hhhhhhhcCceEEEeeCCchhhH
Q 028600 104 CMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQ-----LTTTQTLQLSGALIVSTPQDVAL 178 (207)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~D~IiiD~~~~~~~~~-----~~~~~~~~~d~vi~v~~~~~~~~ 178 (207)
.. ... +.............+.+.+.++.++ ++||+||||+.+++.... ..-.....--.+++|+.....+.
T Consensus 74 p~--~~~-~~~a~~~~~~~i~~~~i~~~~~~l~-~~~D~VlVEGaGgl~~p~~~~~~~~d~~~~~~~pvilV~~~~lg~i 149 (231)
T PRK12374 74 PI--ALS-EEESSVAHSCPINYTLMSNGLANLS-EKVDHVVVEGTGGWRSLMNDLRPLSEWVVQEQLPVLMVVGIQEGCI 149 (231)
T ss_pred Ce--ecC-CCcChHHcCCcCCHHHHHHHHHHHH-hhCCEEEEECCCCcceeccCcccHHHHHHHhCCCEEEEECCCcChH
Confidence 00 000 0000001111223355677777777 999999999997432111 11111112446888888888889
Q ss_pred HHHHHHHHHhhhCCCCeeEEEEccccC
Q 028600 179 IDARKGITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 179 ~~~~~~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
+++.-.++.+...++++.|+|+|+++.
T Consensus 150 n~~lLt~~~l~~~~~~~~gvV~N~~~~ 176 (231)
T PRK12374 150 NHALLTAQAIANDGLPLIGWVANRINP 176 (231)
T ss_pred HHHHHHHHHHHhCCCcEEEEEEeCccC
Confidence 999999999999999999999999863
No 85
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=99.30 E-value=1.5e-11 Score=102.14 Aligned_cols=141 Identities=20% Similarity=0.234 Sum_probs=85.5
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHH-HhCCCeEEEEecCCCCCCccccccccCCccccccccceecccccceeecccc
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALA-SKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGF 109 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la-~~~g~~VlliD~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (207)
+++|+|. +.+|+||||++++||..++ ...|++|++||+|++.......+.. +. ...++.+...
T Consensus 221 ~~~i~~v-GptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~--------~a-----~~~~vp~~~~-- 284 (424)
T PRK05703 221 GGVVALV-GPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKT--------YA-----KIMGIPVEVV-- 284 (424)
T ss_pred CcEEEEE-CCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHH--------HH-----HHhCCceEcc--
Confidence 5788887 5599999999999999998 4268999999999976321111100 00 0001110000
Q ss_pred cCCCCCcccccchhhHHHHHHHHHhcccCCCCEEEEcCCCCCCcchh---hh-hhhh---cCceEEEeeCCchhhHHHHH
Q 028600 110 LVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQL---TT-TQTL---QLSGALIVSTPQDVALIDAR 182 (207)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~D~IiiD~~~~~~~~~~---~~-~~~~---~~d~vi~v~~~~~~~~~~~~ 182 (207)
.....+...+..+ ..||+||||+++....... .+ ..+. .-..+++|+.+. .....+.
T Consensus 285 -------------~~~~~l~~~l~~~--~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~-~~~~~l~ 348 (424)
T PRK05703 285 -------------YDPKELAKALEQL--RDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSAT-TKYEDLK 348 (424)
T ss_pred -------------CCHHhHHHHHHHh--CCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECC-CCHHHHH
Confidence 1123455566665 4699999999975332111 11 1111 122556666654 3557777
Q ss_pred HHHHHhhhCCCCeeEEEEccccC
Q 028600 183 KGITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 183 ~~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
++++.+...+. -++|++++|.
T Consensus 349 ~~~~~f~~~~~--~~vI~TKlDe 369 (424)
T PRK05703 349 DIYKHFSRLPL--DGLIFTKLDE 369 (424)
T ss_pred HHHHHhCCCCC--CEEEEecccc
Confidence 78888876654 4899999874
No 86
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=99.28 E-value=1.5e-10 Score=97.38 Aligned_cols=143 Identities=17% Similarity=0.140 Sum_probs=89.9
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccccCCccccccccceecccccceeeccccc
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGFL 110 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (207)
|+.|.|+++++|+||||+++.|+++|++ +|.+|..+...+...+..++.. .......+++.
T Consensus 3 m~~i~I~gt~s~~GKT~it~~L~~~L~~-~G~~V~~fK~Gpd~~d~~~~~~------------~~g~~~~~ld~------ 63 (451)
T PRK01077 3 MPALVIAAPASGSGKTTVTLGLMRALRR-RGLRVQPFKVGPDYIDPAYHTA------------ATGRPSRNLDS------ 63 (451)
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHh-CCCCcceeecCCCcccHHHHHH------------HhCCCcccCCc------
Confidence 6789999999999999999999999999 9999999988543211110000 00000001100
Q ss_pred CCCCCcccccchhhHHHHHHHHHhcccCCCCEEEEcCCCCCCc---------chhhhhhhhcCceEEEeeCCchhh--HH
Q 028600 111 VPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGD---------AQLTTTQTLQLSGALIVSTPQDVA--LI 179 (207)
Q Consensus 111 ~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~D~IiiD~~~~~~~---------~~~~~~~~~~~d~vi~v~~~~~~~--~~ 179 (207)
. ....+.+.+.++.+. +.||++||++..++-+ ....++.. .--.+|+|++....+ ..
T Consensus 64 ------~----~~~~~~v~~~~~~~~-~~~D~vlVEGagGl~~g~~~~~~~~s~adiA~~-l~~pviLV~~~~~~~~~~a 131 (451)
T PRK01077 64 ------W----MMGEELVRALFARAA-QGADIAVIEGVMGLFDGAGSDPDEGSTADIAKL-LGAPVVLVVDASGMAQSAA 131 (451)
T ss_pred ------e----eCCHHHHHHHHHHhc-ccCCEEEEECCCccccCCccCCCCCCHHHHHHH-hCCCEEEEECCchHHHHHH
Confidence 0 112467788888887 8999999998854422 11222222 123688888877533 33
Q ss_pred HHHHHHHHhhhCCCCeeEEEEccccC
Q 028600 180 DARKGITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 180 ~~~~~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
.+...+..+ ..++++.|+|+|++..
T Consensus 132 ~l~~~~~~~-~~~i~i~GvI~N~v~~ 156 (451)
T PRK01077 132 ALVLGFATF-DPDVRIAGVILNRVGS 156 (451)
T ss_pred HHHHHHHHh-CCCCCEEEEEEECCCC
Confidence 333333443 3377899999999853
No 87
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=99.27 E-value=9.4e-11 Score=95.25 Aligned_cols=147 Identities=21% Similarity=0.223 Sum_probs=92.8
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccccCCccccccccceecccccceeeccccc
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGFL 110 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (207)
+.+|.+ -+-.|+||||++..||.+|.+ .|++|++|-+|.+.|..-..+..-. ...++.+.+.+
T Consensus 100 P~vImm-vGLQGsGKTTt~~KLA~~lkk-~~~kvllVaaD~~RpAA~eQL~~La-------------~q~~v~~f~~~-- 162 (451)
T COG0541 100 PTVILM-VGLQGSGKTTTAGKLAKYLKK-KGKKVLLVAADTYRPAAIEQLKQLA-------------EQVGVPFFGSG-- 162 (451)
T ss_pred CeEEEE-EeccCCChHhHHHHHHHHHHH-cCCceEEEecccCChHHHHHHHHHH-------------HHcCCceecCC--
Confidence 456666 477889999999999999999 9999999999999987543332100 00111111111
Q ss_pred CCCCCcccccchhhHHHHHHHHHhcccCCCCEEEEcCCCCCCcchh------hhhhhhcCceEEEeeCCchhhHHHHHHH
Q 028600 111 VPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQL------TTTQTLQLSGALIVSTPQDVALIDARKG 184 (207)
Q Consensus 111 ~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~D~IiiD~~~~~~~~~~------~~~~~~~~d~vi~v~~~~~~~~~~~~~~ 184 (207)
. +....+-.++.++.+++..||+|||||.+-+....- .+.....-|.+++|+++.. + +++.+.
T Consensus 163 -~--------~~~Pv~Iak~al~~ak~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~-G-QdA~~~ 231 (451)
T COG0541 163 -T--------EKDPVEIAKAALEKAKEEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMI-G-QDAVNT 231 (451)
T ss_pred -C--------CCCHHHHHHHHHHHHHHcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEeccc-c-hHHHHH
Confidence 0 011234556777777657899999999986543321 2222225689999998753 2 222222
Q ss_pred HHHhhhCCCCeeEEEEccccCC
Q 028600 185 ITMFSKVQVPVCSFLAQIISSM 206 (207)
Q Consensus 185 l~~l~~~~~~~~g~v~N~~~~~ 206 (207)
-+.|.+ .+++.|+|+++.|..
T Consensus 232 A~aF~e-~l~itGvIlTKlDGd 252 (451)
T COG0541 232 AKAFNE-ALGITGVILTKLDGD 252 (451)
T ss_pred HHHHhh-hcCCceEEEEcccCC
Confidence 233322 245669999999875
No 88
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=99.26 E-value=3.8e-10 Score=90.17 Aligned_cols=152 Identities=16% Similarity=0.206 Sum_probs=87.4
Q ss_pred CCCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCcc-ccccccCCccccccccceecccccceeecc
Q 028600 29 GVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVP-MMMKIDQKPEVTKDMKMVPIENYGVKCMSM 107 (207)
Q Consensus 29 ~~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (207)
+.+++|+|+ +.+|+||||++..|+..+.+ .|++|.+|++|+..+... .+++... .+.. .. ...+..+.+.
T Consensus 32 ~~~~~i~i~-G~~G~GKttl~~~l~~~~~~-~~~~v~~i~~D~~~~~~~~~~~~~~~--~~~~---~~--~~~~~~~~~~ 102 (300)
T TIGR00750 32 GNAHRVGIT-GTPGAGKSTLLEALGMELRR-RGLKVAVIAVDPSSPFTGGSILGDRT--RMQR---LA--TDPGAFIRSM 102 (300)
T ss_pred CCceEEEEE-CCCCCCHHHHHHHHHHHHHH-CCCeEEEEecCCCCCcchhhhcccch--hhhh---cc--cCCCceeeec
Confidence 347899996 88999999999999999999 999999999998764321 1111110 0000 00 0111111111
Q ss_pred cccCCCCCcccccchhhHHHHHHHHHhcccCCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCchhhHHHHHHHHHH
Q 028600 108 GFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITM 187 (207)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~~~~~~~~~~l~~ 187 (207)
+. .... . .......++++.+...+||+|||||++ ...... ..+..+|.++++..+.. -..+..+...
T Consensus 103 ~~----~~~~-~---~~~~~~~~~~~~l~~~g~D~viidT~G-~~~~e~--~i~~~aD~i~vv~~~~~--~~el~~~~~~ 169 (300)
T TIGR00750 103 PT----RGHL-G---GLSQATRELILLLDAAGYDVIIVETVG-VGQSEV--DIANMADTFVVVTIPGT--GDDLQGIKAG 169 (300)
T ss_pred Cc----cccc-c---chhHHHHHHHHHHHhCCCCEEEEeCCC-Cchhhh--HHHHhhceEEEEecCCc--cHHHHHHHHH
Confidence 10 0000 0 112344455555543789999999995 443333 44557888888875542 2333333333
Q ss_pred hhhCCCCeeEEEEccccC
Q 028600 188 FSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 188 l~~~~~~~~g~v~N~~~~ 205 (207)
+.+ .+. -+++||.|.
T Consensus 170 l~~--~~~-ivv~NK~Dl 184 (300)
T TIGR00750 170 LME--IAD-IYVVNKADG 184 (300)
T ss_pred Hhh--hcc-EEEEEcccc
Confidence 322 233 589999884
No 89
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=99.26 E-value=2.7e-10 Score=88.48 Aligned_cols=150 Identities=19% Similarity=0.229 Sum_probs=99.1
Q ss_pred CCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCc-cccccccCCccccccccceecccccceeec
Q 028600 28 DGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSV-PMMMKIDQKPEVTKDMKMVPIENYGVKCMS 106 (207)
Q Consensus 28 ~~~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (207)
.++..+|+|+ +.+|+||||+.-.|...|.+ .|+||.+|--||..|-. -.++|..... ..... .+++.+-|
T Consensus 48 tG~a~viGIT-G~PGaGKSTli~~L~~~l~~-~G~rVaVlAVDPSSp~TGGsiLGDRiRM-----~~~~~--~~~vFiRs 118 (323)
T COG1703 48 TGNAHVIGIT-GVPGAGKSTLIEALGRELRE-RGHRVAVLAVDPSSPFTGGSILGDRIRM-----QRLAV--DPGVFIRS 118 (323)
T ss_pred CCCCcEEEec-CCCCCchHHHHHHHHHHHHH-CCcEEEEEEECCCCCCCCccccccHhhH-----Hhhcc--CCCeEEee
Confidence 4557899997 88999999999999999999 99999999999977632 1333322110 00111 22222222
Q ss_pred --ccccCCCCCcccccchhhHHHHHHHHHhcccCCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCchh-hHHHHHH
Q 028600 107 --MGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDV-ALIDARK 183 (207)
Q Consensus 107 --~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~~-~~~~~~~ 183 (207)
...... ..+....+++..+....||+|||.|.+ .+++...+.. .+|.+++++.|+.- .++.++.
T Consensus 119 ~~srG~lG----------GlS~at~~~i~~ldAaG~DvIIVETVG-vGQsev~I~~--~aDt~~~v~~pg~GD~~Q~iK~ 185 (323)
T COG1703 119 SPSRGTLG----------GLSRATREAIKLLDAAGYDVIIVETVG-VGQSEVDIAN--MADTFLVVMIPGAGDDLQGIKA 185 (323)
T ss_pred cCCCccch----------hhhHHHHHHHHHHHhcCCCEEEEEecC-CCcchhHHhh--hcceEEEEecCCCCcHHHHHHh
Confidence 111111 235556666666655899999999994 5554554444 68998888877654 5666666
Q ss_pred HHHHhhhCCCCeeEEEEccccC
Q 028600 184 GITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 184 ~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
-+-.+.+ -+++||+|.
T Consensus 186 GimEiaD------i~vINKaD~ 201 (323)
T COG1703 186 GIMEIAD------IIVINKADR 201 (323)
T ss_pred hhhhhhh------eeeEeccCh
Confidence 6666666 488999885
No 90
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=99.26 E-value=1.4e-10 Score=95.10 Aligned_cols=141 Identities=15% Similarity=0.187 Sum_probs=87.5
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHh---CCCeEEEEecCCCCCCccccccccCCccccccccceecccccceeecc
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASK---CQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSM 107 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~---~g~~VlliD~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (207)
+++|+++ +..|+||||+++.||..+... .|++|++|++|.+.....+.+..-.+. .++.+.
T Consensus 174 ~~vi~lv-GptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~-------------lgvpv~-- 237 (388)
T PRK12723 174 KRVFILV-GPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDI-------------MGIPVK-- 237 (388)
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhc-------------CCcceE--
Confidence 5677774 677999999999999998841 489999999998765543333211100 000000
Q ss_pred cccCCCCCcccccchhhHHHHHHHHHhcccCCCCEEEEcCCCCCCcchhhh----hhhh--cCc-eEEEeeCCchhhHHH
Q 028600 108 GFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTT----TQTL--QLS-GALIVSTPQDVALID 180 (207)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~D~IiiD~~~~~~~~~~~~----~~~~--~~d-~vi~v~~~~~~~~~~ 180 (207)
.......+...+..+ .+||+||||+++........+ ..+. ..+ .+++|+++.- ....
T Consensus 238 -------------~~~~~~~l~~~L~~~--~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~-~~~~ 301 (388)
T PRK12723 238 -------------AIESFKDLKEEITQS--KDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTT-KTSD 301 (388)
T ss_pred -------------eeCcHHHHHHHHHHh--CCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCC-CHHH
Confidence 001134566666665 679999999997543221101 1111 123 6888888765 4566
Q ss_pred HHHHHHHhhhCCCCeeEEEEccccC
Q 028600 181 ARKGITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 181 ~~~~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
+.+.+..+...+ +-|+|+++.|.
T Consensus 302 ~~~~~~~~~~~~--~~~~I~TKlDe 324 (388)
T PRK12723 302 VKEIFHQFSPFS--YKTVIFTKLDE 324 (388)
T ss_pred HHHHHHHhcCCC--CCEEEEEeccC
Confidence 666776666554 45899999884
No 91
>PF13500 AAA_26: AAA domain; PDB: 3OF5_A 2IOJ_A 4A0G_B 4A0R_A 4A0H_B 4A0F_B 3FMI_C 3FPA_D 3FMF_C 3FGN_A ....
Probab=99.23 E-value=7.9e-11 Score=88.65 Aligned_cols=158 Identities=16% Similarity=0.204 Sum_probs=94.1
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccccCCccccccccceeccccccee--e-ccc
Q 028600 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKC--M-SMG 108 (207)
Q Consensus 32 k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~ 108 (207)
|.|.|+++..|+|||+++..|+++|.+ +|.+|.++--=.+... .+ . +...+.. ..++.. . ..+
T Consensus 1 r~i~I~~t~t~vGKT~vslgL~~~l~~-~g~~v~~~KPi~~~~~------~d--~---d~~~~~~--~~~~~~~~~~~~~ 66 (199)
T PF13500_consen 1 RTIFITGTDTGVGKTVVSLGLARALRR-RGIKVGYFKPIQTGPE------DD--E---DAELIRE--LFGLSEPPDDPSP 66 (199)
T ss_dssp -EEEEEESSSSSSHHHHHHHHHHHHHH-TTSEEEEEEEEEESCC------CS--S---HHHHHHH--HCCTCCCHHHHEC
T ss_pred CEEEEEeCCCCCCHHHHHHHHHHHHHh-CCCceEEEeeeEecCC------CC--c---hHHHHHH--HhCCCcccccccc
Confidence 568899999999999999999999999 9999998843222211 00 0 0000000 000000 0 011
Q ss_pred ccCCCCCcc-cccc-hhhHHHHHHH-HHhcccCCCCEEEEcCCCCCCcc------hhhhhhhhcCceEEEeeCCchhhHH
Q 028600 109 FLVPSSSPV-VWRG-PMVMSALRKM-SREVDWGNLDILVIDMPPGTGDA------QLTTTQTLQLSGALIVSTPQDVALI 179 (207)
Q Consensus 109 ~~~~~~~~~-~~~~-~~~~~~l~~~-~~~l~~~~~D~IiiD~~~~~~~~------~~~~~~~~~~d~vi~v~~~~~~~~~ 179 (207)
......... .... ......++++ ++.++ +.+|++||++.++.... ...+.....+ .+|+|+.....+++
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~-~~~D~vlVEGag~~~~~~~~~~~n~dia~~L~a-~vIlV~~~~~g~i~ 144 (199)
T PF13500_consen 67 YTFDEPASPHLAAELEGVDIDLERIIYKELA-EEYDVVLVEGAGGLMVPIFSGDLNADIAKALGA-PVILVASGRLGTIN 144 (199)
T ss_dssp EEESSSS-HHHHHHHHT----HHHHHHHHCH-TTTCEEEEEESSSTTSECCTTEEHHHHHHHHT--EEEEEEESSTTHHH
T ss_pred cccCcccCHHHHhhccCCcccHHHHHHHHHh-hcCCEEEEeCCcccCcccccChHHHHHHHHcCC-CEEEEeCCCCCCHH
Confidence 111111111 0000 0111124444 47788 89999999999754311 1222222123 68888888889999
Q ss_pred HHHHHHHHhhhCCCCeeEEEEccccC
Q 028600 180 DARKGITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 180 ~~~~~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
++...++.+++.+.++.|+|+|+++.
T Consensus 145 ~~l~~~~~~~~~g~~v~GvI~N~~~~ 170 (199)
T PF13500_consen 145 HTLLTIEALKQRGIRVLGVILNRVPE 170 (199)
T ss_dssp HHHHHHHHHHCTTS-EEEEEEEECTC
T ss_pred HHHHHHHHHHhcCCCEEEEEEECCCC
Confidence 99999999999999999999999754
No 92
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=99.23 E-value=7.1e-11 Score=92.65 Aligned_cols=129 Identities=16% Similarity=0.048 Sum_probs=78.8
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccccCCcccc--ccccceecccccceeeccc
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVT--KDMKMVPIENYGVKCMSMG 108 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 108 (207)
|++|+|++.| |+||||++.+|+..|++ +| +|++|+.|..... . .+..++.. ..+... ...++..
T Consensus 1 M~~i~i~G~~-gSGKTTLi~~Li~~L~~-~G-~V~~IKhd~h~~~-~----~~g~Ds~~~~~aGa~~------v~~~s~~ 66 (274)
T PRK14493 1 MKVLSIVGYK-ATGKTTLVERLVDRLSG-RG-RVGTVKHMDTERL-N----PDGTDTGRHFDAGADV------VYGLTDG 66 (274)
T ss_pred CcEEEEECCC-CCCHHHHHHHHHHHHHh-CC-CEEEEEEcCCCcC-C----CCCCCcHHHHHCCCcE------EEEecCC
Confidence 5789998885 99999999999999999 99 8999999985411 0 00000110 000000 0000000
Q ss_pred ccCCCCCcccccchhhHHHHHHHHHhcccCCCCEEEEcCCCCCCcchhhhhhhhcCc-eEEEeeCCchhhHHHHHH
Q 028600 109 FLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQTLQLS-GALIVSTPQDVALIDARK 183 (207)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~D~IiiD~~~~~~~~~~~~~~~~~~d-~vi~v~~~~~~~~~~~~~ 183 (207)
...... ....+.++++.+. .++|+||+|+.+.....-+.+..+..+| .+++++.|++..+..+.+
T Consensus 67 ------~~~~~~---~~~~l~~~l~~l~-~~~D~vlVEG~k~~~~pki~v~~~~~~~~~~l~p~~~s~~d~~~lve 132 (274)
T PRK14493 67 ------EWVASG---RDRSLDDALDDLA-PGMDYAVVEGFKDSRLPKVVLGDMDADSDVVARAPTAADLDTEDLVA 132 (274)
T ss_pred ------eEEEEe---cCCCHHHHHHhhC-cCCCEEEEECCCCCCCCEEEEEecccCCcEEEecCCCCccCHHHHHH
Confidence 000000 0124667777776 6899999999987553344455555677 788888888877444443
No 93
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=99.23 E-value=5.4e-10 Score=89.79 Aligned_cols=151 Identities=16% Similarity=0.122 Sum_probs=90.4
Q ss_pred CCCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCcc-ccccccCCccccccccceecccccceeecc
Q 028600 29 GVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVP-MMMKIDQKPEVTKDMKMVPIENYGVKCMSM 107 (207)
Q Consensus 29 ~~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (207)
+.+.+|+|+ +.+|+||||++..|+..+.. .|++|.+|..|+..+... .++|..... ... ....+....+.
T Consensus 54 ~~~~~igi~-G~~GaGKSTl~~~l~~~l~~-~g~~v~vi~~Dp~s~~~~gallgd~~r~-----~~~--~~~~~~~~r~~ 124 (332)
T PRK09435 54 GNALRIGIT-GVPGVGKSTFIEALGMHLIE-QGHKVAVLAVDPSSTRTGGSILGDKTRM-----ERL--SRHPNAFIRPS 124 (332)
T ss_pred CCcEEEEEE-CCCCCCHHHHHHHHHHHHHH-CCCeEEEEEeCCCccccchhhhchHhHH-----Hhh--cCCCCeEEEec
Confidence 447789996 66999999999999999999 899999999999775321 122211100 000 01111111111
Q ss_pred cccCCCCCcccccchhhHHHHHHHHHhcccCCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeC-CchhhHHHHHHHHH
Q 028600 108 GFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVST-PQDVALIDARKGIT 186 (207)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~-~~~~~~~~~~~~l~ 186 (207)
+. ... .......+.+.+..+...+||+|||||++. +..... ....+|.+++|+. +....+......
T Consensus 125 ~~----~~~----l~~~a~~~~~~~~~~~~~g~d~viieT~Gv-~qs~~~--i~~~aD~vlvv~~p~~gd~iq~~k~g-- 191 (332)
T PRK09435 125 PS----SGT----LGGVARKTRETMLLCEAAGYDVILVETVGV-GQSETA--VAGMVDFFLLLQLPGAGDELQGIKKG-- 191 (332)
T ss_pred CC----ccc----ccchHHHHHHHHHHHhccCCCEEEEECCCC-ccchhH--HHHhCCEEEEEecCCchHHHHHHHhh--
Confidence 10 000 012245566666666547899999999964 333332 3447999999986 555555554431
Q ss_pred HhhhCCCCeeEEEEccccC
Q 028600 187 MFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 187 ~l~~~~~~~~g~v~N~~~~ 205 (207)
.++-.+ -+|+||+|.
T Consensus 192 i~E~aD----IiVVNKaDl 206 (332)
T PRK09435 192 IMELAD----LIVINKADG 206 (332)
T ss_pred hhhhhh----eEEeehhcc
Confidence 222221 389999983
No 94
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.17 E-value=1.5e-10 Score=92.52 Aligned_cols=146 Identities=18% Similarity=0.142 Sum_probs=87.6
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccc-cCCccccccccceecccccceeeccc
Q 028600 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKI-DQKPEVTKDMKMVPIENYGVKCMSMG 108 (207)
Q Consensus 30 ~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (207)
.+.+|.|. +-.|+||||++..||+++.+ +|++|++|.+|...+.....+.. ......+... .+
T Consensus 100 kpsVimfV-GLqG~GKTTtc~KlA~y~kk-kG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~yg--------------sy 163 (483)
T KOG0780|consen 100 KPSVIMFV-GLQGSGKTTTCTKLAYYYKK-KGYKVALVCADTFRAGAFDQLKQNATKARVPFYG--------------SY 163 (483)
T ss_pred CCcEEEEE-eccCCCcceeHHHHHHHHHh-cCCceeEEeecccccchHHHHHHHhHhhCCeeEe--------------cc
Confidence 36688885 66788999999999999999 99999999999877654333321 1111111111 00
Q ss_pred ccCCCCCcccccchhhHHHHHHHHHhcccCCCCEEEEcCCCCCCcchh------hhhhhhcCceEEEeeCCchhhHHHHH
Q 028600 109 FLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQL------TTTQTLQLSGALIVSTPQDVALIDAR 182 (207)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~D~IiiD~~~~~~~~~~------~~~~~~~~d~vi~v~~~~~~~~~~~~ 182 (207)
. ..+...-..+-++..+.++||+||+||++-.....- .+.-...-|.+|+|++++.. +..
T Consensus 164 ------t-----e~dpv~ia~egv~~fKke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiG---Qaa 229 (483)
T KOG0780|consen 164 ------T-----EADPVKIASEGVDRFKKENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIG---QAA 229 (483)
T ss_pred ------c-----ccchHHHHHHHHHHHHhcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEecccc---HhH
Confidence 0 011123334444455448999999999985432211 11111146899999998652 111
Q ss_pred HHHHHhhhCCCCeeEEEEccccC
Q 028600 183 KGITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 183 ~~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
.....-.+..+.+-++|+++.|.
T Consensus 230 e~Qa~aFk~~vdvg~vIlTKlDG 252 (483)
T KOG0780|consen 230 EAQARAFKETVDVGAVILTKLDG 252 (483)
T ss_pred HHHHHHHHHhhccceEEEEeccc
Confidence 11111122234566899999885
No 95
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=99.16 E-value=7.3e-10 Score=86.71 Aligned_cols=143 Identities=17% Similarity=0.165 Sum_probs=88.9
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccccCCccccccccceecccccceeecccc
Q 028600 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGF 109 (207)
Q Consensus 30 ~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (207)
.+..++++ +.+|+||||+...+|..+.. .|.+|.++++|.+.......+..... ..++.+...
T Consensus 74 ~~~~i~~~-G~~g~GKTtl~~~l~~~l~~-~~~~v~~i~~D~~ri~~~~ql~~~~~-------------~~~~~~~~~-- 136 (270)
T PRK06731 74 EVQTIALI-GPTGVGKTTTLAKMAWQFHG-KKKTVGFITTDHSRIGTVQQLQDYVK-------------TIGFEVIAV-- 136 (270)
T ss_pred CCCEEEEE-CCCCCcHHHHHHHHHHHHHH-cCCeEEEEecCCCCHHHHHHHHHHhh-------------hcCceEEec--
Confidence 35788886 55999999999999999988 89999999999765322111110000 001111000
Q ss_pred cCCCCCcccccchhhHHHHHHHHHhccc-CCCCEEEEcCCCCCCcchhhhhhh------hcCceEEEeeCCchhhHHHHH
Q 028600 110 LVPSSSPVVWRGPMVMSALRKMSREVDW-GNLDILVIDMPPGTGDAQLTTTQT------LQLSGALIVSTPQDVALIDAR 182 (207)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~l~~~~~~l~~-~~~D~IiiD~~~~~~~~~~~~~~~------~~~d~vi~v~~~~~~~~~~~~ 182 (207)
.....+.+.++.++. .+||+||||+++........+..+ ...+.+++|+++.. .-+++.
T Consensus 137 -------------~~~~~l~~~l~~l~~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~-~~~d~~ 202 (270)
T PRK06731 137 -------------RDEAAMTRALTYFKEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASM-KSKDMI 202 (270)
T ss_pred -------------CCHHHHHHHHHHHHhcCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCcc-CHHHHH
Confidence 113345566655541 479999999998653111111111 13467888888754 345666
Q ss_pred HHHHHhhhCCCCeeEEEEccccC
Q 028600 183 KGITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 183 ~~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
+.++.+.. .++-|+|++|.|-
T Consensus 203 ~~~~~f~~--~~~~~~I~TKlDe 223 (270)
T PRK06731 203 EIITNFKD--IHIDGIVFTKFDE 223 (270)
T ss_pred HHHHHhCC--CCCCEEEEEeecC
Confidence 67777766 4566999999884
No 96
>TIGR00345 arsA arsenite-activated ATPase (arsA). The N-terminal 50 amino acids hits Pfam families NB-ARC and fer4_NifH. residues 4-11 of the seed alignment contain a potential ATP binding site. The function of the gene product is to catalyze the extrusion of the oxyanions arsenite, antimonite and arsenate for detoxification. Some members of this family contain a duplication so the model finds hits twice.
Probab=99.15 E-value=4.8e-10 Score=88.86 Aligned_cols=41 Identities=12% Similarity=0.297 Sum_probs=37.8
Q ss_pred ceEEEeeCCchhhHHHHHHHHHHhhhCCCCeeEEEEccccC
Q 028600 165 SGALIVSTPQDVALIDARKGITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 165 d~vi~v~~~~~~~~~~~~~~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
..+++|+.|+..++..+.++++.+++.+.++.++|+|++..
T Consensus 190 t~~vlV~~pe~~si~e~~rl~~~L~~~g~~~~~lvvN~v~~ 230 (284)
T TIGR00345 190 TSFVLVVIPEKMSLYESERAHKELAKYGIKVDAVIVNQVLP 230 (284)
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHhCCCCCCEEEEeCCcC
Confidence 35899999999999999999999999999999999999753
No 97
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=99.13 E-value=1.3e-10 Score=88.95 Aligned_cols=149 Identities=22% Similarity=0.281 Sum_probs=83.4
Q ss_pred CCCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCcc-ccccccCCcccccccccee-cccccceeec
Q 028600 29 GVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVP-MMMKIDQKPEVTKDMKMVP-IENYGVKCMS 106 (207)
Q Consensus 29 ~~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 106 (207)
+...+|+|+ +.+|+||||+.-.|+..+.+ .|++|.++-.||..|-.- .++|... .+.. ...+++++-+
T Consensus 27 g~a~~iGiT-G~PGaGKSTli~~l~~~~~~-~g~~VaVlAVDPSSp~tGGAlLGDRi--------RM~~~~~d~~vfIRS 96 (266)
T PF03308_consen 27 GRAHVIGIT-GPPGAGKSTLIDALIRELRE-RGKRVAVLAVDPSSPFTGGALLGDRI--------RMQELSRDPGVFIRS 96 (266)
T ss_dssp T-SEEEEEE-E-TTSSHHHHHHHHHHHHHH-TT--EEEEEE-GGGGCC---SS--GG--------GCHHHHTSTTEEEEE
T ss_pred CCceEEEee-CCCCCcHHHHHHHHHHHHhh-cCCceEEEEECCCCCCCCCcccccHH--------HhcCcCCCCCEEEee
Confidence 447899995 78999999999999999999 999999999999776322 3344221 1111 1223333332
Q ss_pred ccccCCCCCcccccchhhHHHHHHHHHhcccCCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCchh-hHHHHHHHH
Q 028600 107 MGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDV-ALIDARKGI 185 (207)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~~-~~~~~~~~l 185 (207)
... .... -..+....+.+..+....||+|||.|- +.+++...+. ..+|.+++|+.|+.- .++.++..+
T Consensus 97 ~at----RG~l----GGls~~t~~~v~ll~aaG~D~IiiETV-GvGQsE~~I~--~~aD~~v~v~~Pg~GD~iQ~~KaGi 165 (266)
T PF03308_consen 97 MAT----RGSL----GGLSRATRDAVRLLDAAGFDVIIIETV-GVGQSEVDIA--DMADTVVLVLVPGLGDEIQAIKAGI 165 (266)
T ss_dssp E-------SSH----HHHHHHHHHHHHHHHHTT-SEEEEEEE-SSSTHHHHHH--TTSSEEEEEEESSTCCCCCTB-TTH
T ss_pred cCc----CCCC----CCccHhHHHHHHHHHHcCCCEEEEeCC-CCCccHHHHH--HhcCeEEEEecCCCccHHHHHhhhh
Confidence 221 0000 022445555555555478999999999 4665555444 468998888887653 233333333
Q ss_pred HHhhhCCCCeeEEEEcccc
Q 028600 186 TMFSKVQVPVCSFLAQIIS 204 (207)
Q Consensus 186 ~~l~~~~~~~~g~v~N~~~ 204 (207)
-.+.+ -+|+||.|
T Consensus 166 mEiaD------i~vVNKaD 178 (266)
T PF03308_consen 166 MEIAD------IFVVNKAD 178 (266)
T ss_dssp HHH-S------EEEEE--S
T ss_pred hhhcc------EEEEeCCC
Confidence 33333 36667665
No 98
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=99.13 E-value=6.2e-10 Score=90.27 Aligned_cols=140 Identities=20% Similarity=0.231 Sum_probs=95.0
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHH-HhCCCeEEEEecCCCCCCccccccccCCccccccccceecccccceeecccc
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALA-SKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGF 109 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la-~~~g~~VlliD~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (207)
.++|++. +..|+||||+.+.||+.++ ....++|.+|.+|.+.-.....+..-.+ +
T Consensus 203 ~~vi~LV-GPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~--------i--------------- 258 (407)
T COG1419 203 KRVIALV-GPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYAD--------I--------------- 258 (407)
T ss_pred CcEEEEE-CCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHH--------H---------------
Confidence 7888886 7789999999999999999 3278999999999887654443322110 0
Q ss_pred cCCCCCcccccchhhHHHHHHHHHhcccCCCCEEEEcCCCCCCcchhhhhhh------hcCceEEEeeCCchhhHHHHHH
Q 028600 110 LVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQT------LQLSGALIVSTPQDVALIDARK 183 (207)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~D~IiiD~~~~~~~~~~~~~~~------~~~d~vi~v~~~~~~~~~~~~~ 183 (207)
.............+.+.+..+ .+||+|+|||.+-..-+..-+..+ .+...+.+|+.++- ...++.+
T Consensus 259 -----m~vp~~vv~~~~el~~ai~~l--~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~-K~~dlke 330 (407)
T COG1419 259 -----MGVPLEVVYSPKELAEAIEAL--RDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATT-KYEDLKE 330 (407)
T ss_pred -----hCCceEEecCHHHHHHHHHHh--hcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCc-chHHHHH
Confidence 000011123467888888888 588999999996321111111111 12345666666654 6688999
Q ss_pred HHHHhhhCCCCeeEEEEcccc
Q 028600 184 GITMFSKVQVPVCSFLAQIIS 204 (207)
Q Consensus 184 ~l~~l~~~~~~~~g~v~N~~~ 204 (207)
+++++...++. |+|+++.|
T Consensus 331 i~~~f~~~~i~--~~I~TKlD 349 (407)
T COG1419 331 IIKQFSLFPID--GLIFTKLD 349 (407)
T ss_pred HHHHhccCCcc--eeEEEccc
Confidence 99999988655 89999987
No 99
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=99.13 E-value=1.2e-09 Score=95.73 Aligned_cols=143 Identities=17% Similarity=0.187 Sum_probs=90.4
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCC-CeEEEEecCCCCCCccccccccCCccccccccceecccccceeecccc
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQ-LKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGF 109 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g-~~VlliD~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (207)
+++|+|+ +..|+||||++..||..+....| ++|.++++|.+.......+..-. ...++.+.
T Consensus 185 g~Vi~lV-GpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~RigA~eQL~~~a-------------~~~gvpv~---- 246 (767)
T PRK14723 185 GGVLALV-GPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIGALEQLRIYG-------------RILGVPVH---- 246 (767)
T ss_pred CeEEEEE-CCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchHHHHHHHHHH-------------HhCCCCcc----
Confidence 6788886 77899999999999999864366 69999999986643322221100 00011000
Q ss_pred cCCCCCcccccchhhHHHHHHHHHhcccCCCCEEEEcCCCCCC-cchhh--hhh---hhcCceEEEeeCCchhhHHHHHH
Q 028600 110 LVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTG-DAQLT--TTQ---TLQLSGALIVSTPQDVALIDARK 183 (207)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~D~IiiD~~~~~~-~~~~~--~~~---~~~~d~vi~v~~~~~~~~~~~~~ 183 (207)
. ......+.+.++.+ .+||+|||||++-.. +.... +.. ...-+.+++|+++.. ..+.+.+
T Consensus 247 -----~------~~~~~~l~~al~~~--~~~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~-~~~~l~~ 312 (767)
T PRK14723 247 -----A------VKDAADLRFALAAL--GDKHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAAS-HGDTLNE 312 (767)
T ss_pred -----c------cCCHHHHHHHHHHh--cCCCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCC-cHHHHHH
Confidence 0 01134577777776 578999999997332 11110 111 112457888888764 5567777
Q ss_pred HHHHhhhC-CCCeeEEEEccccC
Q 028600 184 GITMFSKV-QVPVCSFLAQIISS 205 (207)
Q Consensus 184 ~l~~l~~~-~~~~~g~v~N~~~~ 205 (207)
+++.+... +.++-|+|++|.|-
T Consensus 313 i~~~f~~~~~~~i~glIlTKLDE 335 (767)
T PRK14723 313 VVHAYRHGAGEDVDGCIITKLDE 335 (767)
T ss_pred HHHHHhhcccCCCCEEEEeccCC
Confidence 77777754 34677999999985
No 100
>PRK05632 phosphate acetyltransferase; Reviewed
Probab=99.10 E-value=1.1e-09 Score=96.43 Aligned_cols=139 Identities=14% Similarity=0.162 Sum_probs=90.8
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccccCCccccccccceecccccceeecccc
Q 028600 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGF 109 (207)
Q Consensus 30 ~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (207)
++|.|.|+++.+|+|||+++..|+.+|.+ +|.+|.++--..+.+. ...... ..+..+
T Consensus 1 m~k~l~I~~T~t~~GKT~vslgL~~~L~~-~G~~Vg~fKPi~~~p~-----------~~~~~~----------~~~~~~- 57 (684)
T PRK05632 1 MSRSIYLAPTGTGVGLTSVSLGLMRALER-KGVKVGFFKPIAQPPL-----------TMSEVE----------ALLASG- 57 (684)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHHh-CCCeEEEeCCcccCCC-----------CHHHHH----------HHHhcc-
Confidence 36789999999999999999999999999 9999999963332210 000000 000000
Q ss_pred cCCCCCcccccchhhHHHHHHHHHhcccCCCCEEEEcCCCCCCcch----hhhh-hhhcCceEEEeeCCchhhHH----H
Q 028600 110 LVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQ----LTTT-QTLQLSGALIVSTPQDVALI----D 180 (207)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~D~IiiD~~~~~~~~~----~~~~-~~~~~d~vi~v~~~~~~~~~----~ 180 (207)
.. ....+.+.+.++.+. .+||+||||++...+... .... +....+.+++|+++...+.. .
T Consensus 58 ----~~------~~~~~~I~~~~~~l~-~~~D~VLIEGa~~~~~~~~~~~~na~iA~~L~~pVILV~~~~~~si~d~~~~ 126 (684)
T PRK05632 58 ----QL------DELLEEIVARYHALA-KDCDVVLVEGLDPTRKHPFEFSLNAEIAKNLGAEVVLVSSGGNDTPEELAER 126 (684)
T ss_pred ----CC------hHHHHHHHHHHHHhc-cCCCEEEEeCcCCCCcCcccCchHHHHHHHhCCCEEEEECCCCCChHHHHHH
Confidence 00 123456667777777 899999999996544221 1111 11124689999999877654 4
Q ss_pred HHHHHHHhh-hCCCCeeEEEEcc
Q 028600 181 ARKGITMFS-KVQVPVCSFLAQI 202 (207)
Q Consensus 181 ~~~~l~~l~-~~~~~~~g~v~N~ 202 (207)
+....+.+. +.+.++.|+|+|+
T Consensus 127 i~~~~~~l~~~~~~~v~GVIvNr 149 (684)
T PRK05632 127 IELAASSFGGAKNANILGVIINK 149 (684)
T ss_pred HHHHHHHhccCCCCcEEEEEEEC
Confidence 444455555 5678999999999
No 101
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=99.09 E-value=3e-10 Score=89.93 Aligned_cols=43 Identities=37% Similarity=0.444 Sum_probs=37.6
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHhC-C-CeEEEEecCCCCC
Q 028600 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKC-Q-LKVGLLDADVYGP 74 (207)
Q Consensus 30 ~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~-g-~~VlliD~d~~~~ 74 (207)
.+++|+|++ .+|+||||+++.||..++. . | ++|++|++|++..
T Consensus 193 ~~~vi~~vG-ptGvGKTTt~~kLa~~~~~-~~g~~~V~li~~D~~r~ 237 (282)
T TIGR03499 193 QGGVIALVG-PTGVGKTTTLAKLAARFVL-EHGNKKVALITTDTYRI 237 (282)
T ss_pred CCeEEEEEC-CCCCCHHHHHHHHHHHHHH-HcCCCeEEEEECCccch
Confidence 478999975 5899999999999999998 5 5 9999999998664
No 102
>PF10609 ParA: ParA/MinD ATPase like; InterPro: IPR019591 This entry represents ATPases involved in plasmid partitioning []. It also contains cytosolic Fe-S cluster assembling factors, NBP35 and CFD1 which are required for biogenesis and export of both ribosomal subunits probably through assembling the ISCs in RLI1, a protein which performs rRNA processing and ribosome export [, , ].; PDB: 2PH1_A 3KB1_B.
Probab=99.07 E-value=6.3e-10 Score=70.26 Aligned_cols=64 Identities=47% Similarity=0.846 Sum_probs=50.8
Q ss_pred CEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCchhhHHHHHHHHHHhhhCCCCeeEEEEcccc
Q 028600 141 DILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPVCSFLAQIIS 204 (207)
Q Consensus 141 D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~~~~~~~~~~l~~l~~~~~~~~g~v~N~~~ 204 (207)
||.|||+||+.++..+++......+..|+|++|...+...+.+.++.+++.+++++|+|-|+..
T Consensus 2 D~LiiD~PPGTgD~~l~~~~~~~~~g~ivVTTPq~la~~dv~r~~~~~~~~~vpilGvVENMs~ 65 (81)
T PF10609_consen 2 DYLIIDLPPGTGDEHLTLMQYLPIDGAIVVTTPQELALADVRRAIDMFRKLNVPILGVVENMSY 65 (81)
T ss_dssp CEEEEE--SCSSSHHHHHHHHH--SEEEEEE-CCC--HHHHHHHHHHHHCTT-EEEEEEECT-E
T ss_pred CEEEEeCCCCCCcHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHHHHhcCCCcEEEEECCCc
Confidence 8999999999998887766666689999999999999999999999999999999999999853
No 103
>PRK00784 cobyric acid synthase; Provisional
Probab=99.06 E-value=4.2e-09 Score=89.47 Aligned_cols=171 Identities=13% Similarity=0.133 Sum_probs=92.6
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccccCCccccccccc-------eecccccc
Q 028600 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKM-------VPIENYGV 102 (207)
Q Consensus 30 ~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~~~~~~~~~~~~-------~~~~~~~~ 102 (207)
++|.|.|+++.+|+|||++++.|+++|.+ +|.+|..+.. .+.+....-+.+ .....+...+ .+....+-
T Consensus 1 m~~~ifItGT~T~vGKT~vt~~L~~~l~~-~G~~v~~~Kp--v~~~~~~~~~~d-g~~~~Da~~l~~~~~~~~~~~~i~P 76 (488)
T PRK00784 1 MAKALMVQGTASDAGKSTLVAGLCRILAR-RGYRVAPFKA--QNMSLNSAVTAD-GGEIGRAQALQAEAAGVEPSVDMNP 76 (488)
T ss_pred CCceEEEEeCCCCCcHHHHHHHHHHHHHH-CCCeEecccc--hhccccceECCC-CCeeHHHHHHHHHhCCCCchhccCC
Confidence 36789999999999999999999999999 9999998844 211110000000 0000000000 00000000
Q ss_pred eee-cccccCC-----CCC--cc-----cccchhhHHHHHHHHHhcccCCCCEEEEcCCCCCC-----c-chhhhhhhhc
Q 028600 103 KCM-SMGFLVP-----SSS--PV-----VWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTG-----D-AQLTTTQTLQ 163 (207)
Q Consensus 103 ~~~-~~~~~~~-----~~~--~~-----~~~~~~~~~~l~~~~~~l~~~~~D~IiiD~~~~~~-----~-~~~~~~~~~~ 163 (207)
.++ |...... ... .. ........+.+.+.++.+. ++||+|||++.+++- + ..........
T Consensus 77 ~~~~~~sp~~a~~~~~g~~~~~l~a~~~~~~~~~~~~~I~~~~~~l~-~~~D~vIVEGaGg~~~~~L~~~~~~~~dlak~ 155 (488)
T PRK00784 77 VLLKPQSDRGSQVIVQGKPVGNMDARDYHDYKPRLLEAVLESLDRLA-AEYDVVVVEGAGSPAEINLRDRDIANMGFAEA 155 (488)
T ss_pred EEecCCCCCcceEEEcCccccccCHHHHhhcchhhHHHHHHHHHHHH-hcCCEEEEECCCCccccCcccCCchhHHHHHH
Confidence 011 1110000 000 00 0001234566777777777 899999999874322 0 1111222222
Q ss_pred Cc-eEEEeeCCchh-hHHHHHHHHHHhhh-CCCCeeEEEEccccC
Q 028600 164 LS-GALIVSTPQDV-ALIDARKGITMFSK-VQVPVCSFLAQIISS 205 (207)
Q Consensus 164 ~d-~vi~v~~~~~~-~~~~~~~~l~~l~~-~~~~~~g~v~N~~~~ 205 (207)
.+ .||+|++.... .+..+..+++.+.. .+.++.|+|+|+++.
T Consensus 156 l~~PVILV~~~~~g~~~~~i~~~~~~l~~~~~~~i~GvI~N~v~~ 200 (488)
T PRK00784 156 ADAPVILVADIDRGGVFASLVGTLALLPPEERARVKGFIINKFRG 200 (488)
T ss_pred cCCCEEEEEeCCcCcHHHHHHHHHHhcChhhCCcEEEEEEECCCC
Confidence 33 57788877554 46666666666663 357899999999874
No 104
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=99.06 E-value=1.4e-09 Score=83.46 Aligned_cols=158 Identities=15% Similarity=0.169 Sum_probs=98.5
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccccCCccccccccceecccccceeeccccc
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGFL 110 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (207)
+.+|.| -+..|+||||....|-..+.. .+.+..+|++||.-..+..-.+.+...++.-...+. . +.
T Consensus 19 p~~ilV-vGMAGSGKTTF~QrL~~hl~~-~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMk-----q-------Y~ 84 (366)
T KOG1532|consen 19 PVIILV-VGMAGSGKTTFMQRLNSHLHA-KKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMK-----Q-------YQ 84 (366)
T ss_pred CcEEEE-EecCCCCchhHHHHHHHHHhh-ccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHH-----H-------hC
Confidence 444444 589999999999999999999 899999999999776665555544332221111110 0 11
Q ss_pred CCCCCcccccchhhHHHHH---HHHHhcccCCCCEEEEcCCCCCCcchhhhh------hhhcC--ceEEEeeCCchh---
Q 028600 111 VPSSSPVVWRGPMVMSALR---KMSREVDWGNLDILVIDMPPGTGDAQLTTT------QTLQL--SGALIVSTPQDV--- 176 (207)
Q Consensus 111 ~~~~~~~~~~~~~~~~~l~---~~~~~l~~~~~D~IiiD~~~~~~~~~~~~~------~~~~~--d~vi~v~~~~~~--- 176 (207)
++++....-.-.++..++. .+++... ..+||||||||+.+....|+.. .+..+ ..|+.|++..+.
T Consensus 85 LGPNGgI~TsLNLF~tk~dqv~~~iek~~-~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p 163 (366)
T KOG1532|consen 85 LGPNGGIVTSLNLFATKFDQVIELIEKRA-EEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSP 163 (366)
T ss_pred CCCCcchhhhHHHHHHHHHHHHHHHHHhh-cccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCc
Confidence 1222222212224455555 5556656 7899999999997664444221 11111 133344443332
Q ss_pred --hHHHHHHHHHHhhhCCCCeeEEEEcccc
Q 028600 177 --ALIDARKGITMFSKVQVPVCSFLAQIIS 204 (207)
Q Consensus 177 --~~~~~~~~l~~l~~~~~~~~g~v~N~~~ 204 (207)
=+.++..++..+-+...+.+ +++|+.|
T Consensus 164 ~tFMSNMlYAcSilyktklp~i-vvfNK~D 192 (366)
T KOG1532|consen 164 TTFMSNMLYACSILYKTKLPFI-VVFNKTD 192 (366)
T ss_pred hhHHHHHHHHHHHHHhccCCeE-EEEeccc
Confidence 27788888999999999985 8999976
No 105
>cd03109 DTBS Dethiobiotin synthetase (DTBS) is the penultimate enzyme in the biotin biosynthesis pathway in Escherichia coli and other microorganisms. The enzyme catalyzes formation of the ureido ring of dethiobiotin from (7R,8S)-7,8-diaminononanoic acid (DAPA) and carbon dioxide. The enzyme utilizes carbon dioxide instead of hydrogen carbonate as substrate and is dependent on ATP and divalent metal ions as cofactors.
Probab=99.04 E-value=8.5e-09 Score=72.69 Aligned_cols=98 Identities=17% Similarity=0.146 Sum_probs=75.3
Q ss_pred CCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccccCCccccccccceecccccceeecccccCCCCCcccc
Q 028600 40 KGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGFLVPSSSPVVW 119 (207)
Q Consensus 40 kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 119 (207)
-.|+|||+++..|+..+.+ +|.+|..++...+
T Consensus 7 ~~~~Gkt~~~~~l~~~l~~-~~~~v~~~kp~~~----------------------------------------------- 38 (134)
T cd03109 7 GTDIGKTVATAILARALKE-KGYRVAPLKPVQT----------------------------------------------- 38 (134)
T ss_pred CCCcCHHHHHHHHHHHHHH-CCCeEEEEecCCC-----------------------------------------------
Confidence 3459999999999999999 9999999977764
Q ss_pred cchhhHHHHHHHHHhcccCCCCEEEEcCCCCCCc----chhhhhhhhcCc-eEEEeeCCchhhHHHHHHHHHHhhhCCCC
Q 028600 120 RGPMVMSALRKMSREVDWGNLDILVIDMPPGTGD----AQLTTTQTLQLS-GALIVSTPQDVALIDARKGITMFSKVQVP 194 (207)
Q Consensus 120 ~~~~~~~~l~~~~~~l~~~~~D~IiiD~~~~~~~----~~~~~~~~~~~d-~vi~v~~~~~~~~~~~~~~l~~l~~~~~~ 194 (207)
+|++||++++++.. .......+...+ .+++|++++..+++++...++.++..+..
T Consensus 39 --------------------~d~vliEGaGg~~~p~~~~~~~~d~~~~~~~~vllV~~~~~g~i~~a~~~~~~l~~~g~~ 98 (134)
T cd03109 39 --------------------YDFVLVEGAGGLCVPLKEDFTNADVAKELNLPAILVTSAGLGSINHAFLTIEAARIKGII 98 (134)
T ss_pred --------------------CCEEEEECCCccccCCCCCCCHHHHHHHhCCCEEEEEcCCCCcHhHHHHHHHHHHhcCCc
Confidence 58888888865421 011122222222 48889988888999888999999999999
Q ss_pred eeEEEEccccC
Q 028600 195 VCSFLAQIISS 205 (207)
Q Consensus 195 ~~g~v~N~~~~ 205 (207)
+.+++.|+++.
T Consensus 99 i~gvi~N~~~~ 109 (134)
T cd03109 99 LNGVLGNVIVE 109 (134)
T ss_pred eeEEEEccCCC
Confidence 99999998763
No 106
>TIGR00313 cobQ cobyric acid synthase CobQ.
Probab=99.04 E-value=1.3e-08 Score=86.14 Aligned_cols=166 Identities=13% Similarity=0.157 Sum_probs=89.9
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccccCCcccccc-------ccceecccccceee-
Q 028600 34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKD-------MKMVPIENYGVKCM- 105 (207)
Q Consensus 34 I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~- 105 (207)
|.|+++..++|||++++.|++.+.+ .|.+|..+..- +-+.......+. ....+. ....+....+-.++
T Consensus 1 ~~I~GT~t~vGKT~v~~~L~~~l~~-~G~~v~~fKp~--~~~~~s~~~~~~-~e~~~a~~~qa~a~~~~~~~~~nPv~lk 76 (475)
T TIGR00313 1 IMVVGTTSSAGKSTLTAGLCRILAR-RGYRVAPFKSQ--NMSLNSFVTKEG-GEIAIAQATQALAAGIEPSVHMNPILLK 76 (475)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHHh-CCCeEEEECCc--ccccCccccCCC-chhHHHHHHHHHhCCCCchhccCCEEeC
Confidence 4688999999999999999999999 99999988542 211111000000 000000 00011111111111
Q ss_pred ----------cccccCCCCCcccc---cchhhHHHHHHHHHhcccCCCCEEEEcCCCCCCcc--------hhhhhhhhcC
Q 028600 106 ----------SMGFLVPSSSPVVW---RGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDA--------QLTTTQTLQL 164 (207)
Q Consensus 106 ----------~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~l~~~~~D~IiiD~~~~~~~~--------~~~~~~~~~~ 164 (207)
..|....+.....+ ......+.+.+.++.+. .+||+||||+++++.+. ...++.+..+
T Consensus 77 ~~~~~~s~~i~~g~~~~~~~a~~~~~~~~~~~~~~i~~~~~~l~-~~~D~vIIEGaGGl~~~~~~~~d~s~~~lA~~l~a 155 (475)
T TIGR00313 77 PKGNFTSQVIVHGRAVGDMNYQEYYKNKVDFFLKAIKESLEILA-REYDYVVIEGAGSPAEINLLKRDLANMRIAELANA 155 (475)
T ss_pred cCCCCcCcEEEcCcccCcCCHHHHhhhhhHHHHHHHHHHHHHHH-hcCCEEEEECCCCccccccCcCCchHHHHHHHhCC
Confidence 11110000000000 01233566677777777 89999999999865431 1222222233
Q ss_pred ceEEEeeCCchhh-HHHHHHHHHHhhhC-CCCeeEEEEccccC
Q 028600 165 SGALIVSTPQDVA-LIDARKGITMFSKV-QVPVCSFLAQIISS 205 (207)
Q Consensus 165 d~vi~v~~~~~~~-~~~~~~~l~~l~~~-~~~~~g~v~N~~~~ 205 (207)
.+|+|++....+ +..+..+++.++.. ...+.|+|+|+++.
T Consensus 156 -pVILV~d~~~g~~~a~i~gt~~~l~~~~~~~i~GvIlNrv~~ 197 (475)
T TIGR00313 156 -DAILVADIDRGGVFASIYGTLKLLPENWRKLIKGIVINKFRG 197 (475)
T ss_pred -CEEEEEeCCccHHHHHHHHHHHHhChhhcCceEEEEEeccCC
Confidence 467777766653 34555666666543 35788999999874
No 107
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=99.03 E-value=3.8e-09 Score=86.05 Aligned_cols=144 Identities=19% Similarity=0.158 Sum_probs=84.6
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCC-CeEEEEecCCCCCCccccccccCCccccccccceecccccceeeccc
Q 028600 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQ-LKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMG 108 (207)
Q Consensus 30 ~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g-~~VlliD~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (207)
.+.+++++ +..|+||||++..||..+....| .+|.+|++|.........+..- .. ..++.+..
T Consensus 136 ~g~ii~lv-GptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~--------a~-----~~gv~~~~-- 199 (374)
T PRK14722 136 RGGVFALM-GPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIF--------GK-----ILGVPVHA-- 199 (374)
T ss_pred CCcEEEEE-CCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHH--------HH-----HcCCceEe--
Confidence 36788874 88899999999999998875356 6999999998764322221100 00 00010000
Q ss_pred ccCCCCCcccccchhhHHHHHHHHHhcccCCCCEEEEcCCCCCCcchh---hhhhhh---cCceEEEeeCCchhhHHHHH
Q 028600 109 FLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQL---TTTQTL---QLSGALIVSTPQDVALIDAR 182 (207)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~D~IiiD~~~~~~~~~~---~~~~~~---~~d~vi~v~~~~~~~~~~~~ 182 (207)
......+...+..+ .++|+||||+++....... .+..+. ....+++|+++.. ....+.
T Consensus 200 -------------~~~~~~l~~~l~~l--~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts-~~~~l~ 263 (374)
T PRK14722 200 -------------VKDGGDLQLALAEL--RNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATS-HGDTLN 263 (374)
T ss_pred -------------cCCcccHHHHHHHh--cCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCcc-ChHHHH
Confidence 00112244555555 5789999999964321111 112221 2345677777665 455556
Q ss_pred HHHHHhhhCC-------CCeeEEEEccccC
Q 028600 183 KGITMFSKVQ-------VPVCSFLAQIISS 205 (207)
Q Consensus 183 ~~l~~l~~~~-------~~~~g~v~N~~~~ 205 (207)
+.++.+.... .++-|+|++|.|-
T Consensus 264 evi~~f~~~~~~p~~~~~~~~~~I~TKlDE 293 (374)
T PRK14722 264 EVVQAYRSAAGQPKAALPDLAGCILTKLDE 293 (374)
T ss_pred HHHHHHHHhhcccccccCCCCEEEEecccc
Confidence 6666666542 2356999999874
No 108
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=98.90 E-value=3.2e-08 Score=78.35 Aligned_cols=147 Identities=20% Similarity=0.147 Sum_probs=88.7
Q ss_pred CCCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccccCCccccccccceecccccceeeccc
Q 028600 29 GVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMG 108 (207)
Q Consensus 29 ~~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (207)
+.+-+|.|+ +.-|+||||+.+.||+.|.+ .|++|++.-+|.-....-..+.. .....++.++...
T Consensus 137 ~~p~Vil~v-GVNG~GKTTTIaKLA~~l~~-~g~~VllaA~DTFRAaAiEQL~~-------------w~er~gv~vI~~~ 201 (340)
T COG0552 137 KKPFVILFV-GVNGVGKTTTIAKLAKYLKQ-QGKSVLLAAGDTFRAAAIEQLEV-------------WGERLGVPVISGK 201 (340)
T ss_pred CCcEEEEEE-ecCCCchHhHHHHHHHHHHH-CCCeEEEEecchHHHHHHHHHHH-------------HHHHhCCeEEccC
Confidence 447788886 77899999999999999999 99999999999755332222211 0111233333321
Q ss_pred ccCCCCCcccccchhhHHHHHHHHHhcccCCCCEEEEcCCCCCCcchhhhhhhhc------------CceEEEeeCCch-
Q 028600 109 FLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQTLQ------------LSGALIVSTPQD- 175 (207)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~D~IiiD~~~~~~~~~~~~~~~~~------------~d~vi~v~~~~~- 175 (207)
. +.+...-.-+.++..++++||+||+||.+-+....--+..+.. -+.++++.++..
T Consensus 202 ---~--------G~DpAaVafDAi~~Akar~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttG 270 (340)
T COG0552 202 ---E--------GADPAAVAFDAIQAAKARGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTG 270 (340)
T ss_pred ---C--------CCCcHHHHHHHHHHHHHcCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccC
Confidence 0 1122344455555555599999999999876543322333321 123666655543
Q ss_pred -hhHHHHHHHHHHhhhCCCCeeEEEEccccCC
Q 028600 176 -VALIDARKGITMFSKVQVPVCSFLAQIISSM 206 (207)
Q Consensus 176 -~~~~~~~~~l~~l~~~~~~~~g~v~N~~~~~ 206 (207)
.++++++.+-+. .++.|+|+++.|..
T Consensus 271 qnal~QAk~F~ea-----v~l~GiIlTKlDgt 297 (340)
T COG0552 271 QNALSQAKIFNEA-----VGLDGIILTKLDGT 297 (340)
T ss_pred hhHHHHHHHHHHh-----cCCceEEEEecccC
Confidence 334444333222 34669999998853
No 109
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=98.87 E-value=6.4e-08 Score=81.47 Aligned_cols=141 Identities=19% Similarity=0.180 Sum_probs=83.2
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccccCCccccccccceecccccceeecccccCCC
Q 028600 34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGFLVPS 113 (207)
Q Consensus 34 I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (207)
|.|+++.+|+|||++++.|+++|++ +|.+|..+-.-+.. .+ +.+. ....+. +...+.+
T Consensus 2 ~~I~gT~t~vGKT~vt~~L~~~L~~-~G~~V~~fK~g~d~--------~D--~~~~-------~~~~g~---~~~~ld~- 59 (449)
T TIGR00379 2 VVIAGTSSGVGKTTISTGIMKALSR-RKLRVQPFKVGPDY--------ID--PMFH-------TQATGR---PSRNLDS- 59 (449)
T ss_pred EEEEeCCCCCcHHHHHHHHHHHHHH-CCCceeEEccCCCC--------CC--HHHH-------HHHhCC---chhhCCc-
Confidence 6788999999999999999999999 99999999752211 00 0000 000000 0000000
Q ss_pred CCcccccchhhHHHHHHHHHhcccCCCCEEEEcCCCCCCc-------chhhhhhhhcCc-eEEEeeCCchh--hHHHHHH
Q 028600 114 SSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGD-------AQLTTTQTLQLS-GALIVSTPQDV--ALIDARK 183 (207)
Q Consensus 114 ~~~~~~~~~~~~~~l~~~~~~l~~~~~D~IiiD~~~~~~~-------~~~~~~~~~~~d-~vi~v~~~~~~--~~~~~~~ 183 (207)
+ ....+.+.+.+..+. +.+|++||+...++-+ ...........+ .||+|++.... ++..+..
T Consensus 60 -----~--~~~~~~i~~~~~~~~-~~~D~viVEGagGl~~g~~p~~~~~s~adlAk~l~~pVILV~~~~~~~~t~~al~~ 131 (449)
T TIGR00379 60 -----F--FMSEAQIQECFHRHS-KGTDYSIIEGVRGLYDGISAITDYGSTASVAKALDAPIVLVMNCQRLSRSAAAIVL 131 (449)
T ss_pred -----c--cCCHHHHHHHHHHhc-ccCCEEEEecCCccccCCCCCCCCccHHHHHHHhCCCEEEEECCchHHHHHHHHHH
Confidence 0 023567888888887 8999999999854421 111222222333 57777776631 1111111
Q ss_pred HHHHhhhCCCCeeEEEEccccC
Q 028600 184 GITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 184 ~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
.... .+.+.++.|+|+|++++
T Consensus 132 ~~~~-~~~~i~i~GvIlN~v~~ 152 (449)
T TIGR00379 132 GYRS-FDPGVKLKGVILNRVGS 152 (449)
T ss_pred HHHh-hCCCCCEEEEEEECCCC
Confidence 1222 23478899999999874
No 110
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=98.87 E-value=1e-09 Score=84.60 Aligned_cols=149 Identities=15% Similarity=0.136 Sum_probs=67.9
Q ss_pred CCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccccCCccccccccceecccccceeecccccCCCCCccc
Q 028600 39 GKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGFLVPSSSPVV 118 (207)
Q Consensus 39 ~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (207)
+..|+||||.+..+...+.. .|++|.+|++||....+..-...+....+.-.+.+. ...+=|.| ...
T Consensus 3 GpaGSGKTT~~~~~~~~~~~-~~~~~~~vNLDPa~~~~~y~~~iDird~i~~~evm~-----~~~LGPNG-------al~ 69 (238)
T PF03029_consen 3 GPAGSGKTTFCKGLSEWLES-NGRDVYIVNLDPAVENLPYPPDIDIRDLISVEEVME-----EYGLGPNG-------ALI 69 (238)
T ss_dssp ESTTSSHHHHHHHHHHHHTT-T-S-EEEEE--TT-S--SS--SEEGGGT--HHHHHT-----T-T--HHH-------HHH
T ss_pred CCCCCCHHHHHHHHHHHHHh-ccCCceEEEcchHhcccccCchHHHHhhhhhhhhhh-----hcCcCCcH-------HHH
Confidence 56899999999999999999 999999999999886654433332221111100000 01111111 111
Q ss_pred ccc---hhhHHHHHHHHHhcccCCCCEEEEcCCCCCCcchhh------hhhhh--cCceEEEeeCCchhh-----HHHHH
Q 028600 119 WRG---PMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLT------TTQTL--QLSGALIVSTPQDVA-----LIDAR 182 (207)
Q Consensus 119 ~~~---~~~~~~l~~~~~~l~~~~~D~IiiD~~~~~~~~~~~------~~~~~--~~d~vi~v~~~~~~~-----~~~~~ 182 (207)
..- ....+++.+.++... . +|+|+|||+.+.-..+. +..+. ..-.++.+++....+ +....
T Consensus 70 ~~me~l~~~~d~l~~~i~~~~-~--~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L 146 (238)
T PF03029_consen 70 YCMEYLEENIDWLDEEIEKYE-D--DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLL 146 (238)
T ss_dssp HHHHHHGGGHHHHHHHHHHHH----SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcC-C--cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHH
Confidence 100 122345555555543 3 99999999865422220 11111 112344445444321 23333
Q ss_pred HHHHHhhhCCCCeeEEEEcccc
Q 028600 183 KGITMFSKVQVPVCSFLAQIIS 204 (207)
Q Consensus 183 ~~l~~l~~~~~~~~g~v~N~~~ 204 (207)
..+..+-+.+.|.+ .|+||.|
T Consensus 147 ~s~s~~~~~~lP~v-nvlsK~D 167 (238)
T PF03029_consen 147 LSLSIMLRLELPHV-NVLSKID 167 (238)
T ss_dssp HHHHHHHHHTSEEE-EEE--GG
T ss_pred HHHHHHhhCCCCEE-EeeeccC
Confidence 44444556778874 8889887
No 111
>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional
Probab=98.86 E-value=1.2e-07 Score=79.02 Aligned_cols=143 Identities=16% Similarity=0.130 Sum_probs=87.0
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccccCCccccccccceecccccceeeccccc
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGFL 110 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (207)
|+.|.|+++..|+||||++..|+++|.+ +|.+|..+-..+...+..++-..... +. .+++
T Consensus 1 m~~~~i~~~~s~~GKT~vt~gl~~~l~~-~g~~v~~~K~Gpd~iD~~~~~~~~g~----------~~--~nld------- 60 (433)
T PRK13896 1 MKGFVLGGTSSGVGKTVATLATIRALED-AGYAVQPAKAGPDFIDPSHHEAVAGR----------PS--RTLD------- 60 (433)
T ss_pred CceEEEEeCCCCCCHHHHHHHHHHHHHH-CCCeeEEEeeCCCCCCHHHHHHHhCC----------Cc--ccCC-------
Confidence 3468999999999999999999999999 99999888764432221111100000 00 0111
Q ss_pred CCCCCcccccchhhHHHHHHHHHhcccCCCCEEEEcCCCCCCcch--hhhhhhhcC-ceEEEeeCCchhh--HHHHHHHH
Q 028600 111 VPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQ--LTTTQTLQL-SGALIVSTPQDVA--LIDARKGI 185 (207)
Q Consensus 111 ~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~D~IiiD~~~~~~~~~--~~~~~~~~~-d~vi~v~~~~~~~--~~~~~~~l 185 (207)
+.. ...+.+.+.+. + ..+|++||++..++-+.. ......... -.||+|+++...+ ...+...+
T Consensus 61 --~~~-------~~~~~i~~~~~--~-~~~d~~vIEG~gGl~dg~~~s~adla~~l~~PviLVv~~~~g~~s~aa~l~g~ 128 (433)
T PRK13896 61 --PWL-------SGEDGMRRNYY--R-GEGDICVVEGVMGLYDGDVSSTAMVAEALDLPVVLVVDAKAGMESVAATALGF 128 (433)
T ss_pred --hhh-------CCHHHHHHHHH--h-hcCCEEEEECCCccccCCCCCHHHHHHHHCCCEEEEEcCcccHHHHHHHHHHH
Confidence 000 11244555443 3 569999999987653322 111221122 3689999888774 44444554
Q ss_pred HHhhh---CCCCeeEEEEccccC
Q 028600 186 TMFSK---VQVPVCSFLAQIISS 205 (207)
Q Consensus 186 ~~l~~---~~~~~~g~v~N~~~~ 205 (207)
..+.. .++++.|+|+|++.+
T Consensus 129 ~~~~~~~~~~~~i~GvIlN~~~~ 151 (433)
T PRK13896 129 RAYADRIGRDIDVAGVIAQRAHG 151 (433)
T ss_pred HHHHHhccCCCcEEEEEEECCCc
Confidence 44443 478999999999874
No 112
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.85 E-value=3e-08 Score=83.34 Aligned_cols=141 Identities=21% Similarity=0.192 Sum_probs=79.5
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCC-CeEEEEecCCCCCCccccccccCCccccccccceecccccceeecccc
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQ-LKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGF 109 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g-~~VlliD~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (207)
+++|+++ +-.|+||||++..||..+....| ++|.+|++|.+.......+. .+.. ..++.....
T Consensus 256 g~Vi~Lv-GpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr--------~~Ae-----ilGVpv~~~-- 319 (484)
T PRK06995 256 GGVFALM-GPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLR--------IYGK-----ILGVPVHAV-- 319 (484)
T ss_pred CcEEEEE-CCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHH--------HHHH-----HhCCCeecc--
Confidence 6789986 67799999999999999865366 59999999985433111110 0000 000000000
Q ss_pred cCCCCCcccccchhhHHHHHHHHHhcccCCCCEEEEcCCCCCC-cchh--hhhhhhc---CceEEEeeCCchhhHHHHHH
Q 028600 110 LVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTG-DAQL--TTTQTLQ---LSGALIVSTPQDVALIDARK 183 (207)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~D~IiiD~~~~~~-~~~~--~~~~~~~---~d~vi~v~~~~~~~~~~~~~ 183 (207)
. . ...+...+..+ .++|+|+||+++... +... ....+.. -...++|+++.. ....+.+
T Consensus 320 ----~--------~-~~Dl~~aL~~L--~d~d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~-~~~~l~~ 383 (484)
T PRK06995 320 ----K--------D-AADLRLALSEL--RNKHIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATS-HGDTLNE 383 (484)
T ss_pred ----C--------C-chhHHHHHHhc--cCCCeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCC-cHHHHHH
Confidence 0 0 11122223344 678999999986322 1111 1111111 123566766654 4466666
Q ss_pred HHHHhhhCCCCeeEEEEccccC
Q 028600 184 GITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 184 ~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
.++.++..+ +-|+|+||.|.
T Consensus 384 i~~~f~~~~--~~g~IlTKlDe 403 (484)
T PRK06995 384 VVQAYRGPG--LAGCILTKLDE 403 (484)
T ss_pred HHHHhccCC--CCEEEEeCCCC
Confidence 777776654 45899999984
No 113
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=98.81 E-value=9.8e-09 Score=86.24 Aligned_cols=74 Identities=23% Similarity=0.189 Sum_probs=62.1
Q ss_pred EeecCcccccccccccc-ccCCCCeEEEEEeCCC---CCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccccC
Q 028600 9 TRLGGVRYYAAFGSKDL-KIDGVKDVIAVASGKG---GVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQ 84 (207)
Q Consensus 9 ~~~~~~r~~~~~~~~~~-~~~~~~k~I~v~s~kg---G~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~~ 84 (207)
+.|+..|.++.+..... .....+|+|.|+|..+ |+||||++.|||.+|++ .|+||+++ .+.|++...|+.+.
T Consensus 32 e~Yg~~kaki~~~~~~~~~~~~~~k~IlVTS~~PTp~GEGKTt~sinLA~~la~-~Gkkvlli---LR~Psl~~~fg~kg 107 (557)
T PRK13505 32 EPYGKYKAKISLDKIKALKDKKDGKLILVTAINPTPAGEGKSTVTVGLGDALNK-IGKKTVIA---LREPSLGPVFGIKG 107 (557)
T ss_pred HhccCcceeeCHHHHhhhccCCCCeEEEEecCCCCCCCCCHHHHHHHHHHHHHH-cCCeEEEE---EecCCcccccCCCC
Confidence 56778888888766443 1223589999999999 99999999999999999 99999999 88999999998765
Q ss_pred Cc
Q 028600 85 KP 86 (207)
Q Consensus 85 ~~ 86 (207)
..
T Consensus 108 ga 109 (557)
T PRK13505 108 GA 109 (557)
T ss_pred Cc
Confidence 43
No 114
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=98.80 E-value=1.5e-07 Score=76.88 Aligned_cols=141 Identities=18% Similarity=0.181 Sum_probs=89.5
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccccCCccccccccceecccccceeecccccCC
Q 028600 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGFLVP 112 (207)
Q Consensus 33 ~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (207)
.|.+.+...|+||||++..|.++|++ +|.+|--+..-|..-+...+--..... .. |++..
T Consensus 2 ~vvIAg~~SG~GKTTvT~glm~aL~~-rg~~VqpfKvGPDYIDP~~H~~atG~~----------sr--NLD~~------- 61 (451)
T COG1797 2 AVVIAGTSSGSGKTTVTLGLMRALRR-RGLKVQPFKVGPDYIDPGYHTAATGRP----------SR--NLDSW------- 61 (451)
T ss_pred ceEEecCCCCCcHHHHHHHHHHHHHh-cCCcccccccCCCccCchhhhHhhCCc----------cC--CCchh-------
Confidence 47888999999999999999999999 999998877766543322211111000 00 11110
Q ss_pred CCCcccccchhhHHHHHHHHHhcccCCCCEEEEcCCCCCCcc---------hhhhhhhhcCceEEEeeCCchhhHHHHHH
Q 028600 113 SSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDA---------QLTTTQTLQLSGALIVSTPQDVALIDARK 183 (207)
Q Consensus 113 ~~~~~~~~~~~~~~~l~~~~~~l~~~~~D~IiiD~~~~~~~~---------~~~~~~~~~~d~vi~v~~~~~~~~~~~~~ 183 (207)
.+..+.++.++..-. +..|+.||..-=++-|. ...++.+. --.||+|++....+-..+ .
T Consensus 62 ---------mm~~~~v~~~f~~~~-~~adi~vIEGVMGLfDG~~~~~~~gSTA~lAk~l-~~PVvLVid~~~~s~S~A-A 129 (451)
T COG1797 62 ---------MMGEEGVRALFARAA-ADADIAVIEGVMGLFDGRGSATDTGSTADLAKLL-GAPVVLVVDASGLSRSVA-A 129 (451)
T ss_pred ---------hcCHHHHHHHHHHhc-CCCCEEEEeeccccccCCCCCcCCCCHHHHHHHh-CCCEEEEEeCcchhHHHH-H
Confidence 122467888888877 89999998776433221 22233321 236999999987664333 3
Q ss_pred HHHHhhhC--CCCeeEEEEccccC
Q 028600 184 GITMFSKV--QVPVCSFLAQIISS 205 (207)
Q Consensus 184 ~l~~l~~~--~~~~~g~v~N~~~~ 205 (207)
++.-+..+ ++++-|||+||+.+
T Consensus 130 iv~G~~~fdp~v~iaGVIlNrVgs 153 (451)
T COG1797 130 IVKGFKHFDPDVNIAGVILNRVGS 153 (451)
T ss_pred HHHHHHhcCCCCceEEEEEecCCC
Confidence 33444433 56789999999875
No 115
>PRK06278 cobyrinic acid a,c-diamide synthase; Validated
Probab=98.79 E-value=1.3e-07 Score=79.56 Aligned_cols=146 Identities=16% Similarity=0.107 Sum_probs=83.2
Q ss_pred CCCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccccCCccccc-cccceecccccceeecc
Q 028600 29 GVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTK-DMKMVPIENYGVKCMSM 107 (207)
Q Consensus 29 ~~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 107 (207)
+.++.|.|+++..|+||||+++.|+++|.+ + |..+-..+...++. +.+.. .....+....+..
T Consensus 236 ~~~~~i~Iagt~Tg~GKT~vt~~L~~al~~-~---v~~fK~GpD~id~~--------p~~~~~~~~~sp~~a~n~~---- 299 (476)
T PRK06278 236 NKPKGIILLATGSESGKTFLTTSIAGKLRG-K---VFVAKIGPDVRDIV--------PSLYLLREKMTKYNSIKIG---- 299 (476)
T ss_pred cCCCeEEEEeCCCCCCHHHHHHHHHHHHHh-C---eEEEcCCCChhhcC--------CcceecccccCChHHHhhc----
Confidence 347789999999999999999999999998 4 77766432111100 00000 0000000000000
Q ss_pred cccCCCCCcccccchhhHHHHHHHHHhcccCCCCEEEEcCCCCCCcch---------hhhhhhhcCceEEEeeCCchhhH
Q 028600 108 GFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQ---------LTTTQTLQLSGALIVSTPQDVAL 178 (207)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~D~IiiD~~~~~~~~~---------~~~~~~~~~d~vi~v~~~~~~~~ 178 (207)
...+ ....+.++ .++...+|++||+...++-+.. ..++... --.||+|++....++
T Consensus 300 --------~d~~--~~~~~~~~----~~~~~~~DivIIEGagGL~dg~~~~~~~~S~adlAk~l-~~PVILV~~~~~g~i 364 (476)
T PRK06278 300 --------DRGW--SDVEEFLE----FVKNSDYDYYIIEGVMGAFTGALNKKNPYSGAEIAKAL-GFPVYIVSSCSKSGI 364 (476)
T ss_pred --------CCcc--cCHHHHHH----HHHhcCCCEEEEECCCCcccccCCCCccccHHHHHHHh-CCCEEEEEcCCCChH
Confidence 0000 01112222 2321468999999987654321 1122221 236999999988876
Q ss_pred HHHHHH----HHHhhhCCCCeeEEEEccccC
Q 028600 179 IDARKG----ITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 179 ~~~~~~----l~~l~~~~~~~~g~v~N~~~~ 205 (207)
+++... .+.+++.+.++.|+|+|++.+
T Consensus 365 ~~~~~~i~G~~~~l~~~~i~i~GVIlN~v~~ 395 (476)
T PRK06278 365 EGAFVESMAYYSLLKKMGVKVEGIILNKVYN 395 (476)
T ss_pred HHHHHHHHHHHHHHhcCCCcEEEEEEECCCc
Confidence 555443 455667788999999999874
No 116
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.75 E-value=5.5e-08 Score=79.96 Aligned_cols=157 Identities=17% Similarity=0.197 Sum_probs=102.6
Q ss_pred CCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccccCCccccccccceecccccceeecc
Q 028600 28 DGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSM 107 (207)
Q Consensus 28 ~~~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (207)
.+++-+|+|+ +.-|+||||.-+.+|++|-+ .+.||++.-||+-....-..++...+. .......-+.+...
T Consensus 375 ~krPYVi~fv-GVNGVGKSTNLAKIayWLlq-NkfrVLIAACDTFRsGAvEQLrtHv~r-------l~~l~~~~v~lfek 445 (587)
T KOG0781|consen 375 RKRPYVISFV-GVNGVGKSTNLAKIAYWLLQ-NKFRVLIAACDTFRSGAVEQLRTHVER-------LSALHGTMVELFEK 445 (587)
T ss_pred cCCCeEEEEE-eecCccccchHHHHHHHHHh-CCceEEEEeccchhhhHHHHHHHHHHH-------HHHhccchhHHHhh
Confidence 4458899997 78899999999999999999 999999999998765433333211100 00000011122222
Q ss_pred cccCCCCCcccccchhhHHHHHHHHHhcccCCCCEEEEcCCCCCCcchhhhhhh------hcCceEEEeeCCc--hhhHH
Q 028600 108 GFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQT------LQLSGALIVSTPQ--DVALI 179 (207)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~D~IiiD~~~~~~~~~~~~~~~------~~~d~vi~v~~~~--~~~~~ 179 (207)
|+ +-......++++++.+.+.||+|+|||.+-..+...-+..+ ..-|.|+.|-++- ..++.
T Consensus 446 GY-----------gkd~a~vak~AI~~a~~~gfDVvLiDTAGR~~~~~~lm~~l~k~~~~~~pd~i~~vgealvg~dsv~ 514 (587)
T KOG0781|consen 446 GY-----------GKDAAGVAKEAIQEARNQGFDVVLIDTAGRMHNNAPLMTSLAKLIKVNKPDLILFVGEALVGNDSVD 514 (587)
T ss_pred hc-----------CCChHHHHHHHHHHHHhcCCCEEEEeccccccCChhHHHHHHHHHhcCCCceEEEehhhhhCcHHHH
Confidence 21 11234556677777765889999999998665443223222 2468888886653 35788
Q ss_pred HHHHHHHHhhhCCCC--eeEEEEcccc
Q 028600 180 DARKGITMFSKVQVP--VCSFLAQIIS 204 (207)
Q Consensus 180 ~~~~~l~~l~~~~~~--~~g~v~N~~~ 204 (207)
++.++-+.+.+...+ +-|+|++++|
T Consensus 515 q~~~fn~al~~~~~~r~id~~~ltk~d 541 (587)
T KOG0781|consen 515 QLKKFNRALADHSTPRLIDGILLTKFD 541 (587)
T ss_pred HHHHHHHHHhcCCCccccceEEEEecc
Confidence 888888887766533 5789999887
No 117
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.55 E-value=1.9e-06 Score=71.50 Aligned_cols=141 Identities=21% Similarity=0.187 Sum_probs=82.3
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCC-CeEEEEecCCCCCCccccccccCCccccccccceecccccceeeccc
Q 028600 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQ-LKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMG 108 (207)
Q Consensus 30 ~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g-~~VlliD~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (207)
.+.+|++. +..|+||||+...||..+....| .++.++-+|.........+. .... ..++.+.
T Consensus 190 ~g~vi~lv-GpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~--------~~a~-----ilGvp~~--- 252 (420)
T PRK14721 190 QGGVYALI-GPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLR--------IYGK-----LLGVSVR--- 252 (420)
T ss_pred CCcEEEEE-CCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHH--------HHHH-----HcCCcee---
Confidence 47788886 78899999999999986654244 78899988875532211110 0000 0011100
Q ss_pred ccCCCCCcccccchhhHHHHHHHHHhcccCCCCEEEEcCCCCCCcc--hh--hhhhhh---cCceEEEeeCCchhhHHHH
Q 028600 109 FLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDA--QL--TTTQTL---QLSGALIVSTPQDVALIDA 181 (207)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~D~IiiD~~~~~~~~--~~--~~~~~~---~~d~vi~v~~~~~~~~~~~ 181 (207)
. ......+...+..+ .++|+|+|||++ .... .. .+..+. ....+++|+++.- ..+.+
T Consensus 253 ------~------v~~~~dl~~al~~l--~~~d~VLIDTaG-rsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~-~~~~~ 316 (420)
T PRK14721 253 ------S------IKDIADLQLMLHEL--RGKHMVLIDTVG-MSQRDQMLAEQIAMLSQCGTQVKHLLLLNATS-SGDTL 316 (420)
T ss_pred ------c------CCCHHHHHHHHHHh--cCCCEEEecCCC-CCcchHHHHHHHHHHhccCCCceEEEEEcCCC-CHHHH
Confidence 0 01123344445555 689999999984 3321 11 111111 2346778877763 45667
Q ss_pred HHHHHHhhhCCCCeeEEEEccccC
Q 028600 182 RKGITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 182 ~~~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
.+.+..+... ++-|+|++|.|-
T Consensus 317 ~~~~~~f~~~--~~~~~I~TKlDE 338 (420)
T PRK14721 317 DEVISAYQGH--GIHGCIITKVDE 338 (420)
T ss_pred HHHHHHhcCC--CCCEEEEEeeeC
Confidence 7777777765 455899999874
No 118
>cd00477 FTHFS Formyltetrahydrofolate synthetase (FTHFS) catalyzes the ATP-dependent activation of formate ion via its addition to the N10 position of tetrahydrofolate. FTHFS is a highly expressed key enzyme in both the Wood-Ljungdahl pathway of autotrophic CO2 fixation (acetogenesis) and the glycine synthase/reductase pathways of purinolysis. The key physiological role of this enzyme in acetogens is to catalyze the formylation of tetrahydrofolate, an initial step in the reduction of carbon dioxide and other one-carbon precursors to acetate. In purinolytic organisms, the enzymatic reaction is reversed, liberating formate from 10-formyltetrahydrofolate with concurrent production of ATP.
Probab=98.47 E-value=4.2e-07 Score=75.79 Aligned_cols=53 Identities=28% Similarity=0.244 Sum_probs=48.8
Q ss_pred CCeEEEEEeCCC---CCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccccCCc
Q 028600 30 VKDVIAVASGKG---GVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKP 86 (207)
Q Consensus 30 ~~k~I~v~s~kg---G~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~~~~ 86 (207)
.+|+|.|+|..+ |+||||++.+||..|++ .|+||+++ .+.|++...|+.....
T Consensus 37 ~~k~IlVTs~~PTp~GEGKTT~si~La~~la~-~Gkk~l~~---LR~PSlg~~fg~kgga 92 (524)
T cd00477 37 DGKLILVTAITPTPAGEGKTTTTIGLAQALNA-HGKKAIAC---LREPSLGPTFGIKGGA 92 (524)
T ss_pred CCeEEEEEeCCCCCCCCCHHHHHHHHHHHHHH-hCCcEEEE---EecCCcCcccCCCCCC
Confidence 489999999999 99999999999999999 99999988 8899999999887654
No 119
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=98.42 E-value=5.9e-07 Score=67.76 Aligned_cols=101 Identities=13% Similarity=0.149 Sum_probs=60.9
Q ss_pred eCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccccCCccccccccceecccccceeecccccCCCCCcc
Q 028600 38 SGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGFLVPSSSPV 117 (207)
Q Consensus 38 s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (207)
-+.+|+||||-+..+...++. .|++|.+|++||.+..+..-+..+...-+ ....+.. .. -++++...
T Consensus 8 IGPPgSGKsTYc~g~~~fls~-~gr~~~vVNLDPaNd~~~Y~~~v~I~eli-t~edvm~----~~-------~LGPNg~l 74 (290)
T KOG1533|consen 8 IGPPGSGKSTYCNGMSQFLSA-IGRPVAVVNLDPANDNLPYECAVDIRELI-TVEDVME----EL-------GLGPNGAL 74 (290)
T ss_pred EcCCCCCccchhhhHHHHHHH-hCCceEEEecCCcccCCCCCCcccHHHHc-cHHHHHH----Hh-------CCCCchhH
Confidence 378999999999999999999 99999999999988776544433211100 0000000 01 11222222
Q ss_pred cccchhhHHHHHHHHHhcccCCCCEEEEcCCCCC
Q 028600 118 VWRGPMVMSALRKMSREVDWGNLDILVIDMPPGT 151 (207)
Q Consensus 118 ~~~~~~~~~~l~~~~~~l~~~~~D~IiiD~~~~~ 151 (207)
.+.-+.....++=+++.++.....|+|+|+|+..
T Consensus 75 ~yc~E~l~~~idwl~~~l~~~~~~Y~lFDcPGQV 108 (290)
T KOG1533|consen 75 KYCMEYLEANIDWLLEKLKPLTDHYVLFDCPGQV 108 (290)
T ss_pred HHHHHHHHhhhHHHHHHhhhccCcEEEEeCCCcE
Confidence 2222222334444444454247899999999854
No 120
>PRK13506 formate--tetrahydrofolate ligase; Provisional
Probab=98.41 E-value=7e-07 Score=75.17 Aligned_cols=53 Identities=21% Similarity=0.280 Sum_probs=49.1
Q ss_pred CCeEEEEEeCCC---CCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccccCCc
Q 028600 30 VKDVIAVASGKG---GVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKP 86 (207)
Q Consensus 30 ~~k~I~v~s~kg---G~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~~~~ 86 (207)
.+|+|.|+|..+ |+||||++.+||..+++ .|++| ||+ .+.|++...|+.....
T Consensus 53 ~~k~IlVTs~~PTp~GEGKTT~si~La~~la~-~Gk~~--i~~-LR~Pslg~~fg~kgga 108 (578)
T PRK13506 53 KGKLVLVTAITPTPLGEGKTVTTIGLTQGLNA-LGQKV--CAC-IRQPSMGPVFGVKGGA 108 (578)
T ss_pred CCeEEEEEecCCCCCCCCHHHHHHHHHHHHHH-hCCce--EEE-eccCCcCCccCCCCCC
Confidence 489999999999 99999999999999999 99999 888 9999999999887654
No 121
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=98.35 E-value=5e-06 Score=67.62 Aligned_cols=107 Identities=21% Similarity=0.219 Sum_probs=64.3
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccccCCcccccccc----ceecccccceeec
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMK----MVPIENYGVKCMS 106 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~ 106 (207)
.-+++++++ -++||||+++-||-.+-+ +|++|.+||+|+-++++. .+....+..... .........++
T Consensus 73 ~~~vmvvG~-vDSGKSTLt~~LaN~~l~-rG~~v~iiDaDvGQ~ei~----pPg~ISL~~~~s~~~~L~~l~~~~~~F-- 144 (398)
T COG1341 73 VGVVMVVGP-VDSGKSTLTTYLANKLLA-RGRKVAIIDADVGQSEIG----PPGFISLAFPESPVISLSELEPFTLYF-- 144 (398)
T ss_pred CcEEEEECC-cCcCHHHHHHHHHHHHhh-cCceEEEEeCCCCCcccC----CCceEEeecccCCCCCHHHcCccceEE--
Confidence 446777655 478999999999999999 999999999999886632 111111111111 01111111111
Q ss_pred ccccCCCCCcccccchhhHHHHHHHHHhcccCCCCEEEEcCCCCC
Q 028600 107 MGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGT 151 (207)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~D~IiiD~~~~~ 151 (207)
.|.+.+...+. ........+.+.++ +.-|+|||||++-+
T Consensus 145 vG~isP~~~~~-----~~i~~v~rL~~~a~-~~~~~ilIdT~GWi 183 (398)
T COG1341 145 VGSISPQGFPG-----RYIAGVARLVDLAK-KEADFILIDTDGWI 183 (398)
T ss_pred EeccCCCCChH-----HHHHHHHHHHHHhh-ccCCEEEEcCCCce
Confidence 22222222221 23456677777776 66799999999743
No 122
>PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase
Probab=98.28 E-value=2.5e-05 Score=70.13 Aligned_cols=65 Identities=11% Similarity=0.082 Sum_probs=50.5
Q ss_pred CCCCEEEEcCCCCCC----cchhhhhhhhcCc-eEEEeeCCchhhHHHHHHHHHHhhhCCCCeeEEEEcc
Q 028600 138 GNLDILVIDMPPGTG----DAQLTTTQTLQLS-GALIVSTPQDVALIDARKGITMFSKVQVPVCSFLAQI 202 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~----~~~~~~~~~~~~d-~vi~v~~~~~~~~~~~~~~l~~l~~~~~~~~g~v~N~ 202 (207)
..+|++||++.+++- ........+...+ .+|+|+....-+++++...++.++..|+++.|+|+|.
T Consensus 183 ~~~d~vlVEGAGGl~vPl~~~~~~~Dl~~~l~lPvILV~~~~LG~INhtllt~eaL~~rGi~v~gii~~~ 252 (817)
T PLN02974 183 GGRVLALVETAGGVASPGPSGTLQCDLYRPLRLPAILVGDGRLGGISATLAAYESLLLRGYDVVAVVIED 252 (817)
T ss_pred ccCCeEEEECCCcccccCCCCCCHHHHHHHhCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEEeC
Confidence 358999999998752 1112122222222 6999999999999999999999999999999999995
No 123
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.25 E-value=1.3e-05 Score=60.12 Aligned_cols=68 Identities=19% Similarity=0.244 Sum_probs=50.2
Q ss_pred CCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCchhhHHHHHHHHHHhhhCCCCeeEEEEccccC
Q 028600 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~~~~~~~~~~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
+++.++++|||+-..-.......+..+|.+++|+++...-.....+.+..+.+.+.+.+-+++||+|.
T Consensus 63 ~~~~i~~iDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~~~iIvviNK~D~ 130 (195)
T cd01884 63 ANRHYAHVDCPGHADYIKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKADM 130 (195)
T ss_pred CCeEEEEEECcCHHHHHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCcEEEEEeCCCC
Confidence 56678999999632211223555667999999999887555677788888888888755688999985
No 124
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=98.24 E-value=5.4e-06 Score=65.26 Aligned_cols=67 Identities=16% Similarity=0.128 Sum_probs=52.1
Q ss_pred CCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCchhhHHHHHHHHHHhhhCCCCeeEEEEccccC
Q 028600 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~~~~~~~~~~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
+.+++.|+|||+..+........+..+|.+++|+++.......+...++.+...+.+.+ +++||.|.
T Consensus 62 ~~~~i~liDtPG~~~f~~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~~~p~i-ivvNK~D~ 128 (268)
T cd04170 62 KGHKINLIDTPGYADFVGETRAALRAADAALVVVSAQSGVEVGTEKLWEFADEAGIPRI-IFINKMDR 128 (268)
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEE-EEEECCcc
Confidence 57899999999754322334566778999999999988766677778888888888874 79999985
No 125
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=98.24 E-value=1e-05 Score=63.65 Aligned_cols=67 Identities=13% Similarity=0.102 Sum_probs=47.5
Q ss_pred CCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCchhhHHHHHHHHHHhhhCCCCeeEEEEccccC
Q 028600 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~~~~~~~~~~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
+++.+.++|||+...........+..+|.+++|+++...-.......++..+..+.++ -+++||.|.
T Consensus 69 ~~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~~~~P~-iivvNK~D~ 135 (267)
T cd04169 69 RDCVINLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRLRGIPI-ITFINKLDR 135 (267)
T ss_pred CCEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCccHHHHHHHHHHHhcCCCE-EEEEECCcc
Confidence 6789999999964321222345566799999999886543445556677777778886 488999984
No 126
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=98.23 E-value=1.4e-05 Score=63.04 Aligned_cols=67 Identities=15% Similarity=0.064 Sum_probs=51.5
Q ss_pred CCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCchhhHHHHHHHHHHhhhCCCCeeEEEEccccC
Q 028600 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~~~~~~~~~~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
+++.+.++|||+...........+..+|.+++|+++...-.....+.++.+.+.+.+++ +++||.|.
T Consensus 62 ~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~~~p~i-vviNK~D~ 128 (270)
T cd01886 62 KDHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRYNVPRI-AFVNKMDR 128 (270)
T ss_pred CCEEEEEEECCCcHHHHHHHHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEE-EEEECCCC
Confidence 57889999999743322333556778999999999877555666788888888899986 89999985
No 127
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=98.14 E-value=2e-05 Score=56.93 Aligned_cols=42 Identities=17% Similarity=0.204 Sum_probs=36.2
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCC
Q 028600 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (207)
Q Consensus 30 ~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~ 73 (207)
++++++|++.| ++||||+...|...|.. +|++|.+|--....
T Consensus 1 m~~Il~ivG~k-~SGKTTLie~lv~~L~~-~G~rVa~iKH~hh~ 42 (161)
T COG1763 1 MMKILGIVGYK-NSGKTTLIEKLVRKLKA-RGYRVATVKHAHHD 42 (161)
T ss_pred CCcEEEEEecC-CCChhhHHHHHHHHHHh-CCcEEEEEEecCCC
Confidence 47999997555 67999999999999999 99999999766544
No 128
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=98.12 E-value=4.1e-05 Score=58.64 Aligned_cols=38 Identities=18% Similarity=0.119 Sum_probs=34.3
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d 70 (207)
|++|.|++. .|+||||++..|+..|.+ .|.+|.++..+
T Consensus 1 m~vi~ivG~-~gsGKTtl~~~l~~~L~~-~G~~V~viK~~ 38 (229)
T PRK14494 1 MRAIGVIGF-KDSGKTTLIEKILKNLKE-RGYRVATAKHT 38 (229)
T ss_pred CeEEEEECC-CCChHHHHHHHHHHHHHh-CCCeEEEEEec
Confidence 578999877 599999999999999999 99999999754
No 129
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=98.12 E-value=1.7e-05 Score=58.57 Aligned_cols=66 Identities=14% Similarity=0.148 Sum_probs=47.0
Q ss_pred CCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCchhhHHHHHHHHHHhhhCCCCeeEEEEccccC
Q 028600 139 NLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 139 ~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~~~~~~~~~~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
.++++++|+|+...........+..+|.+++|++..........+.+..+.+.+.++ -+++|+.|.
T Consensus 61 ~~~~~liDtpG~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~i-~iv~nK~D~ 126 (189)
T cd00881 61 DRRVNFIDTPGHEDFSSEVIRGLSVSDGAILVVDANEGVQPQTREHLRIAREGGLPI-IVAINKIDR 126 (189)
T ss_pred CEEEEEEeCCCcHHHHHHHHHHHHhcCEEEEEEECCCCCcHHHHHHHHHHHHCCCCe-EEEEECCCC
Confidence 578999999964332233345556799999999987655555566666777666666 699999884
No 130
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=98.12 E-value=1.6e-05 Score=57.39 Aligned_cols=38 Identities=26% Similarity=0.336 Sum_probs=32.4
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCC
Q 028600 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (207)
Q Consensus 33 ~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~ 72 (207)
+|+|+ +..|+||||++..|...+.. .|.+|.+|..|..
T Consensus 1 vi~i~-G~~gsGKTtl~~~l~~~l~~-~G~~V~viK~~~~ 38 (155)
T TIGR00176 1 VLQIV-GPKNSGKTTLIERLVKALKA-RGYRVATIKHDHH 38 (155)
T ss_pred CEEEE-CCCCCCHHHHHHHHHHHHHh-cCCeEEEEecccc
Confidence 36676 45699999999999999999 8999999987743
No 131
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=98.10 E-value=2.9e-05 Score=60.02 Aligned_cols=67 Identities=16% Similarity=0.216 Sum_probs=50.6
Q ss_pred CCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCchhhHHHHHHHHHHhhhCCCCeeEEEEccccC
Q 028600 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~~~~~~~~~~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
+++.+.++|||+...........+..+|.+++|++....-.......++.+.+.+.+++ +++||.|.
T Consensus 62 ~~~~i~liDTPG~~~f~~~~~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~~~P~i-ivvNK~D~ 128 (237)
T cd04168 62 EDTKVNLIDTPGHMDFIAEVERSLSVLDGAILVISAVEGVQAQTRILWRLLRKLNIPTI-IFVNKIDR 128 (237)
T ss_pred CCEEEEEEeCCCccchHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEE-EEEECccc
Confidence 57889999999643322334556668999999998877555566777888888888875 89999985
No 132
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=98.08 E-value=6e-06 Score=59.86 Aligned_cols=59 Identities=27% Similarity=0.246 Sum_probs=49.6
Q ss_pred CCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccccCCccc
Q 028600 28 DGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEV 88 (207)
Q Consensus 28 ~~~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~~~~~~ 88 (207)
...+.+|=|+ +-.|+||||+|..|...|.+ +|++|.++|-|--...+..-+|.+.+...
T Consensus 20 ~~~~~viW~T-GLSGsGKSTiA~ale~~L~~-~G~~~y~LDGDnvR~gL~~dLgFs~edR~ 78 (197)
T COG0529 20 GQKGAVIWFT-GLSGSGKSTIANALEEKLFA-KGYHVYLLDGDNVRHGLNRDLGFSREDRI 78 (197)
T ss_pred CCCCeEEEee-cCCCCCHHHHHHHHHHHHHH-cCCeEEEecChhHhhcccCCCCCChHHHH
Confidence 3446788885 77899999999999999999 99999999999988888888877665433
No 133
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=98.07 E-value=1.8e-05 Score=58.96 Aligned_cols=67 Identities=15% Similarity=0.158 Sum_probs=53.1
Q ss_pred CCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCchhhHHHHHHHHHHhhhCCCCeeEEEEccccC
Q 028600 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~~~~~~~~~~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
..+.+.++|||+-..........+..+|.+|+|+++...-.....+.+..+...+.+ +-+++||+|.
T Consensus 68 ~~~~i~~iDtPG~~~f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~~~p-~ivvlNK~D~ 134 (188)
T PF00009_consen 68 NNRKITLIDTPGHEDFIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRELGIP-IIVVLNKMDL 134 (188)
T ss_dssp SSEEEEEEEESSSHHHHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHTT-S-EEEEEETCTS
T ss_pred cccceeecccccccceeecccceecccccceeeeecccccccccccccccccccccc-eEEeeeeccc
Confidence 789999999996422222335556689999999999877778889999999999999 4699999985
No 134
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=98.07 E-value=0.00017 Score=52.25 Aligned_cols=143 Identities=13% Similarity=0.135 Sum_probs=75.2
Q ss_pred EEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccccCCccccccccceecccccceeecccccCCCC
Q 028600 35 AVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGFLVPSS 114 (207)
Q Consensus 35 ~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (207)
.+..+.-|+||||+...+... . .|.++.++-.+.....+.... +. .....+.-+..|..--.
T Consensus 3 ~~l~G~~GsGKTtl~~~l~~~--~-~~~~~~~i~~~~G~~~~d~~~-------~~-------~~~~~v~~l~~GCiCC~- 64 (158)
T cd03112 3 TVLTGFLGAGKTTLLNHILTE--Q-HGRKIAVIENEFGEVGIDNQL-------VV-------DTDEEIIEMNNGCICCT- 64 (158)
T ss_pred EEEEECCCCCHHHHHHHHHhc--c-cCCcEEEEecCCCccchhHHH-------Hh-------CCCceEEEeCCCEeEee-
Confidence 344688899999999998865 3 588998887765332222110 00 00011111111110000
Q ss_pred CcccccchhhHHHHHHHHHhc--ccCCCCEEEEcCCCCCCcchhh--------hhhhhcCceEEEeeCCchhhH--HHHH
Q 028600 115 SPVVWRGPMVMSALRKMSREV--DWGNLDILVIDMPPGTGDAQLT--------TTQTLQLSGALIVSTPQDVAL--IDAR 182 (207)
Q Consensus 115 ~~~~~~~~~~~~~l~~~~~~l--~~~~~D~IiiD~~~~~~~~~~~--------~~~~~~~d~vi~v~~~~~~~~--~~~~ 182 (207)
-.......+.++++.+ +..++|+|+||+++........ .......|.++.++++..... ....
T Consensus 65 -----~~~~l~~~l~~l~~~~~~~~~~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~ 139 (158)
T cd03112 65 -----VRGDLIRALLDLLERLDAGKIAFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQT 139 (158)
T ss_pred -----CchhHHHHHHHHHHHHHhccCCCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccH
Confidence 0112344454444432 1167999999999755432221 112334788999999765332 1223
Q ss_pred HHHHHhhhCCCCeeEEEEcccc
Q 028600 183 KGITMFSKVQVPVCSFLAQIIS 204 (207)
Q Consensus 183 ~~l~~l~~~~~~~~g~v~N~~~ 204 (207)
.+.++++.. . -+|+||.|
T Consensus 140 ~~~~Qi~~a--d--~ivlnk~d 157 (158)
T cd03112 140 EAQSQIAFA--D--RILLNKTD 157 (158)
T ss_pred HHHHHHHHC--C--EEEEeccc
Confidence 344555543 2 47899986
No 135
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=98.01 E-value=4.6e-05 Score=65.49 Aligned_cols=67 Identities=12% Similarity=0.088 Sum_probs=48.4
Q ss_pred CCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCchhhHHHHHHHHHHhhhCCCCeeEEEEccccC
Q 028600 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~~~~~~~~~~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
+++.+.++|||+...-.......+..+|.+++|+++...-...+...++.++..+.++ -+++||.|.
T Consensus 78 ~~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~~Pi-ivviNKiD~ 144 (527)
T TIGR00503 78 RDCLVNLLDTPGHEDFSEDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRLRDTPI-FTFMNKLDR 144 (527)
T ss_pred CCeEEEEEECCChhhHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCE-EEEEECccc
Confidence 5788999999964321122345566899999999987754455667777777777776 589999985
No 136
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=98.00 E-value=4.5e-05 Score=65.52 Aligned_cols=67 Identities=15% Similarity=0.104 Sum_probs=49.7
Q ss_pred CCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCchhhHHHHHHHHHHhhhCCCCeeEEEEccccC
Q 028600 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~~~~~~~~~~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
+.+.+.++|||+..+........+..+|.+++|+++...-...+.+.++.....++++ -+++||.|.
T Consensus 77 ~~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~~iPi-iv~iNK~D~ 143 (526)
T PRK00741 77 RDCLINLLDTPGHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRLRDTPI-FTFINKLDR 143 (526)
T ss_pred CCEEEEEEECCCchhhHHHHHHHHHHCCEEEEEEecCCCCCHHHHHHHHHHHhcCCCE-EEEEECCcc
Confidence 5688999999964332222355666899999999987654555677778888888886 489999985
No 137
>PRK08233 hypothetical protein; Provisional
Probab=97.99 E-value=6.6e-05 Score=55.31 Aligned_cols=37 Identities=27% Similarity=0.275 Sum_probs=28.7
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~ 71 (207)
+.+|+|+|.. |+||||+|..||..+.. ..++..|.+.
T Consensus 3 ~~iI~I~G~~-GsGKtTla~~L~~~l~~---~~~~~~d~~~ 39 (182)
T PRK08233 3 TKIITIAAVS-GGGKTTLTERLTHKLKN---SKALYFDRYD 39 (182)
T ss_pred ceEEEEECCC-CCCHHHHHHHHHhhCCC---CceEEECCEE
Confidence 5788886555 99999999999987643 3677777664
No 138
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=97.99 E-value=5.4e-05 Score=57.49 Aligned_cols=67 Identities=12% Similarity=0.083 Sum_probs=46.3
Q ss_pred CCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCchhhHHHHHHHHHHhhhCCCCeeEEEEccccC
Q 028600 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~~~~~~~~~~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
..+.+.++|+|+...........+..+|.+++|++..........+.+..+...+.++ -+++||.|.
T Consensus 69 ~~~~i~iiDtpG~~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~~~~p~-iiviNK~D~ 135 (213)
T cd04167 69 KSYLFNIIDTPGHVNFMDEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAILEGLPI-VLVINKIDR 135 (213)
T ss_pred CEEEEEEEECCCCcchHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCE-EEEEECccc
Confidence 4688999999975332234455566899999999886544334455555555556665 589999985
No 139
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.98 E-value=2e-05 Score=60.37 Aligned_cols=38 Identities=29% Similarity=0.402 Sum_probs=34.4
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d 70 (207)
+.++.+ ++.+|+|||+++.++|...++ .|.+|++||++
T Consensus 23 g~i~~i-~G~~GsGKT~l~~~la~~~~~-~~~~v~yi~~e 60 (225)
T PRK09361 23 GTITQI-YGPPGSGKTNICLQLAVEAAK-NGKKVIYIDTE 60 (225)
T ss_pred CeEEEE-ECCCCCCHHHHHHHHHHHHHH-CCCeEEEEECC
Confidence 556666 689999999999999999999 89999999998
No 140
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.98 E-value=6.1e-05 Score=55.75 Aligned_cols=40 Identities=20% Similarity=0.096 Sum_probs=34.8
Q ss_pred EEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCC
Q 028600 35 AVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPS 75 (207)
Q Consensus 35 ~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~ 75 (207)
.+..+.+|+|||+++..++...++ .|.+|+++.++.....
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~-~g~~v~~~s~e~~~~~ 41 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLA-RGEPGLYVTLEESPEE 41 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH-CCCcEEEEECCCCHHH
Confidence 345799999999999999999999 9999999998865543
No 141
>PRK14495 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/unknown domain fusion protein; Provisional
Probab=97.97 E-value=5.5e-05 Score=62.75 Aligned_cols=38 Identities=21% Similarity=0.241 Sum_probs=34.4
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d 70 (207)
|++|+|++.| |+||||+...|...|.+ +|.||.+|--+
T Consensus 1 MkVi~IvG~s-gSGKTTLiekLI~~L~~-rG~rVavIKH~ 38 (452)
T PRK14495 1 MRVYGIIGWK-DAGKTGLVERLVAAIAA-RGFSVSTVKHS 38 (452)
T ss_pred CcEEEEEecC-CCCHHHHHHHHHHHHHh-CCCeEEEEecc
Confidence 5799998765 99999999999999999 99999999764
No 142
>PRK00889 adenylylsulfate kinase; Provisional
Probab=97.97 E-value=1.2e-05 Score=59.07 Aligned_cols=41 Identities=32% Similarity=0.359 Sum_probs=36.2
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~ 73 (207)
+++|.++ +-+|+||||++..||..+.. .|.++.++|.|...
T Consensus 4 g~~i~~~-G~~GsGKST~a~~la~~l~~-~g~~v~~id~D~~~ 44 (175)
T PRK00889 4 GVTVWFT-GLSGAGKTTIARALAEKLRE-AGYPVEVLDGDAVR 44 (175)
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHHHH-cCCeEEEEcCccHH
Confidence 6788885 88899999999999999998 89999999998643
No 143
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=97.95 E-value=8.6e-05 Score=56.81 Aligned_cols=67 Identities=18% Similarity=0.131 Sum_probs=51.4
Q ss_pred CCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCchhhHHHHHHHHHHhhhCCCCeeEEEEccccC
Q 028600 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~~~~~~~~~~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
..+.+.|+|||+-..........+..+|.+++|++....-.......+....+.+.++ -+++||+|.
T Consensus 71 ~~~~i~iiDTPG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~~~~p~-ilviNKiD~ 137 (222)
T cd01885 71 NEYLINLIDSPGHVDFSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALKERVKP-VLVINKIDR 137 (222)
T ss_pred CceEEEEECCCCccccHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHHcCCCE-EEEEECCCc
Confidence 5788999999975443344566677899999999988765566677777777777876 589999986
No 144
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=97.94 E-value=4.8e-05 Score=58.29 Aligned_cols=67 Identities=12% Similarity=0.063 Sum_probs=49.4
Q ss_pred CCCCEEEEcCCCCCCcchhhhhhhh--cCceEEEeeCCchhhHHHHHHHHHHhhhCCCCeeEEEEccccC
Q 028600 138 GNLDILVIDMPPGTGDAQLTTTQTL--QLSGALIVSTPQDVALIDARKGITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~~~~~~~~--~~d~vi~v~~~~~~~~~~~~~~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
..+-+.++|+|+--.-.......+. .+|.+++|++++..-.....+.+..+...+.++ -+++|++|.
T Consensus 82 ~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~~ip~-ivvvNK~D~ 150 (224)
T cd04165 82 SSKLVTFIDLAGHERYLKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALNIPV-FVVVTKIDL 150 (224)
T ss_pred CCcEEEEEECCCcHHHHHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCE-EEEEECccc
Confidence 6788999999963221112233332 579999999987766677788899999999996 589999984
No 145
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=97.92 E-value=9e-05 Score=53.61 Aligned_cols=67 Identities=16% Similarity=0.152 Sum_probs=46.1
Q ss_pred CCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCchhhHHHHHHHHHHhhhCCCCeeEEEEccccC
Q 028600 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~~~~~~~~~~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
..+++.++|+|+..............+|.+++|++++..........+..+...+.++ -+|+|+.|.
T Consensus 48 ~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~d~~~~~~~~~~~~~~~~~~~~~p~-ivv~NK~Dl 114 (168)
T cd01887 48 KIPGITFIDTPGHEAFTNMRARGASLTDIAILVVAADDGVMPQTIEAIKLAKAANVPF-IVALNKIDK 114 (168)
T ss_pred CcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCE-EEEEEceec
Confidence 6789999999964322122233445799999999987644445555666677777776 588999873
No 146
>COG1492 CobQ Cobyric acid synthase [Coenzyme metabolism]
Probab=97.91 E-value=3.2e-05 Score=64.60 Aligned_cols=171 Identities=16% Similarity=0.197 Sum_probs=95.6
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccccC----------------Ccccccc-ccc
Q 028600 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQ----------------KPEVTKD-MKM 94 (207)
Q Consensus 32 k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~~----------------~~~~~~~-~~~ 94 (207)
+.|++.++...+|||++++.|...+++ .|.+|+=+ ..|+-++...--.+. .+..... -.+
T Consensus 2 ~~iMv~GT~S~~GKS~~~aglcRi~~~-~G~~V~PF--K~QNMsLNs~it~~G~EIgraQ~~QA~Aa~i~p~v~mNPvLL 78 (486)
T COG1492 2 KAIMVQGTTSDAGKSFLVAGLCRILAR-RGYRVAPF--KSQNMSLNSAITPGGGEIGRAQALQALAAGIEPSVHMNPVLL 78 (486)
T ss_pred CccEEEeccCCcchhhhhhhhhHHHHh-cCCccCCC--chhhcccccEECCCCcEEehhhhHHHHHcCCCCccccCCEEE
Confidence 457888999999999999999999999 99998644 333333322211110 0000000 112
Q ss_pred eecccccceeecccccCCCCCcccc---cchhhHHHHHHHHHhcccCCCCEEEEcCCCCCC-----cc-hhhhhhhhcCc
Q 028600 95 VPIENYGVKCMSMGFLVPSSSPVVW---RGPMVMSALRKMSREVDWGNLDILVIDMPPGTG-----DA-QLTTTQTLQLS 165 (207)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~l~~~~~D~IiiD~~~~~~-----~~-~~~~~~~~~~d 165 (207)
.|....+..++..|.....-....+ .-......+.+.++.+. +.||+|++...++.. +. ...+.....+|
T Consensus 79 KP~sd~~sQVIv~G~~~G~~s~~~yy~~~~~~l~~~v~~s~~~l~-~~~d~Vv~EGAGSpaEiNlr~~Di~Nm~~a~~~d 157 (486)
T COG1492 79 KPCSDTGSQVIVMGKDIGRKSAVEYYQEGKGLLWVAVKESLERLD-REYDVVVIEGAGSPAEINLRDRDIANMGVAEIAD 157 (486)
T ss_pred eecCCCceEEEEecccccccChHHHHHHHHHHHHHHHHHHHHHhh-hcccEEEEecCCChhhcCcccccccceeeehhcC
Confidence 3333334455555543333333221 11234566778888888 999999999987421 11 11122222454
Q ss_pred -eEEEeeCCchhh-HHHHHHHHHHhhhC-CCCeeEEEEccccCC
Q 028600 166 -GALIVSTPQDVA-LIDARKGITMFSKV-QVPVCSFLAQIISSM 206 (207)
Q Consensus 166 -~vi~v~~~~~~~-~~~~~~~l~~l~~~-~~~~~g~v~N~~~~~ 206 (207)
.+|+|.+=++-+ ..++.-.+..+... ...+-|+|+||++.+
T Consensus 158 apvILV~DIdRGGvfAsl~GT~~lL~~~~r~~VkG~iINkFRGd 201 (486)
T COG1492 158 APVILVGDIDRGGVFASLYGTLALLPESDRALVKGFIINKFRGD 201 (486)
T ss_pred CCEEEEEeecccceeeeeeehheecCHhHhcceeEEEEeeeCCC
Confidence 478887766632 22233333333322 235679999999865
No 147
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=97.91 E-value=0.00021 Score=51.13 Aligned_cols=66 Identities=14% Similarity=0.136 Sum_probs=37.3
Q ss_pred CCCEEEEcCCCCCCcch--------hhhhhhhcCceEEEeeCCchhhHHHHHHHHHHhhhCCCCeeEEEEccccC
Q 028600 139 NLDILVIDMPPGTGDAQ--------LTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 139 ~~D~IiiD~~~~~~~~~--------~~~~~~~~~d~vi~v~~~~~~~~~~~~~~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
.++++++|+|+...... ........+|.++++++.............+.+...+.++ -+|+||.|.
T Consensus 50 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~-iiv~nK~Dl 123 (168)
T cd04163 50 DAQIIFVDTPGIHKPKKKLGERMVKAAWSALKDVDLVLFVVDASEPIGEGDEFILELLKKSKTPV-ILVLNKIDL 123 (168)
T ss_pred CeEEEEEECCCCCcchHHHHHHHHHHHHHHHHhCCEEEEEEECCCccCchHHHHHHHHHHhCCCE-EEEEEchhc
Confidence 46788888875322111 1122344577888887776543334444555555555555 577888763
No 148
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=97.89 E-value=0.00028 Score=53.36 Aligned_cols=41 Identities=24% Similarity=0.329 Sum_probs=33.5
Q ss_pred CCCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCC
Q 028600 29 GVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (207)
Q Consensus 29 ~~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~ 72 (207)
+..++|+|+ +-.|+||||+..++...+.. +.+|.++..|+.
T Consensus 20 ~~~~~i~~~-G~~gsGKTTli~~l~~~~~~--~~~v~v~~~~~~ 60 (207)
T TIGR00073 20 HGLVVLNFM-SSPGSGKTTLIEKLIDNLKD--EVKIAVIEGDVI 60 (207)
T ss_pred cCcEEEEEE-CCCCCCHHHHHHHHHHHHhc--CCeEEEEECCCC
Confidence 347888885 77899999999999987654 679999997764
No 149
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=97.88 E-value=4.5e-05 Score=68.07 Aligned_cols=67 Identities=15% Similarity=0.125 Sum_probs=50.2
Q ss_pred CCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCchhhHHHHHHHHHHhhhCCCCeeEEEEccccC
Q 028600 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~~~~~~~~~~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
.+|.+.++|||+-..-......++..+|.+++|+++...-.......+..+.+.+.+++ +++||+|+
T Consensus 84 ~~~~i~liDTPG~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~~~~~~~p~i-vviNKiD~ 150 (720)
T TIGR00490 84 NEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQALKENVKPV-LFINKVDR 150 (720)
T ss_pred CceEEEEEeCCCccccHHHHHHHHHhcCEEEEEEecCCCCCccHHHHHHHHHHcCCCEE-EEEEChhc
Confidence 67999999999653322344667778999999998866444455666777777788886 99999986
No 150
>COG2403 Predicted GTPase [General function prediction only]
Probab=97.86 E-value=0.00016 Score=58.31 Aligned_cols=38 Identities=34% Similarity=0.406 Sum_probs=36.2
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEec
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDA 69 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~ 69 (207)
..+|+|++...|+|||+++..+|+.+.+ +|+|||+|-.
T Consensus 126 kPviaV~atrtg~GKsaVS~~v~r~l~e-rgyrv~vVrh 163 (449)
T COG2403 126 KPVIAVTATRTGVGKSAVSRYVARLLRE-RGYRVCVVRH 163 (449)
T ss_pred CceEEEEEeccccchhHHHHHHHHHHHH-cCCceEEEec
Confidence 5689999999999999999999999999 9999999977
No 151
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.86 E-value=9.1e-05 Score=53.16 Aligned_cols=39 Identities=31% Similarity=0.307 Sum_probs=34.0
Q ss_pred EEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCC
Q 028600 36 VASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPS 75 (207)
Q Consensus 36 v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~ 75 (207)
+..+++|+||||++..++..++. .|.+|++++.+.....
T Consensus 3 ~i~G~~G~GKT~l~~~i~~~~~~-~~~~v~~~~~e~~~~~ 41 (165)
T cd01120 3 LVFGPTGSGKTTLALQLALNIAT-KGGKVVYVDIEEEIEE 41 (165)
T ss_pred eEeCCCCCCHHHHHHHHHHHHHh-cCCEEEEEECCcchHH
Confidence 34688999999999999999999 9999999999875543
No 152
>PRK12740 elongation factor G; Reviewed
Probab=97.85 E-value=7.5e-05 Score=66.26 Aligned_cols=67 Identities=16% Similarity=0.092 Sum_probs=50.8
Q ss_pred CCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCchhhHHHHHHHHHHhhhCCCCeeEEEEccccC
Q 028600 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~~~~~~~~~~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
.+|+++++|||+...........+..+|.+++|+++...-.......+..+...+.+++ +++||+|.
T Consensus 58 ~~~~i~liDtPG~~~~~~~~~~~l~~aD~vllvvd~~~~~~~~~~~~~~~~~~~~~p~i-iv~NK~D~ 124 (668)
T PRK12740 58 KGHKINLIDTPGHVDFTGEVERALRVLDGAVVVVCAVGGVEPQTETVWRQAEKYGVPRI-IFVNKMDR 124 (668)
T ss_pred CCEEEEEEECCCcHHHHHHHHHHHHHhCeEEEEEeCCCCcCHHHHHHHHHHHHcCCCEE-EEEECCCC
Confidence 67999999999754322333556668999999999987655666677777777888875 79999985
No 153
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=97.84 E-value=0.00015 Score=53.52 Aligned_cols=141 Identities=13% Similarity=0.095 Sum_probs=72.7
Q ss_pred EEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccccCCccccccccceecccccceeecccccCCCC
Q 028600 35 AVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGFLVPSS 114 (207)
Q Consensus 35 ~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (207)
.+.++-=|+||||+..+|.. ... .|.|+++|-.|.........+-.. ....+.-+..|..--..
T Consensus 3 ~ii~GfLGsGKTTli~~ll~-~~~-~~~~~~vI~ne~g~~~iD~~~l~~--------------~~~~v~~l~~gcicc~~ 66 (178)
T PF02492_consen 3 IIITGFLGSGKTTLINHLLK-RNR-QGERVAVIVNEFGEVNIDAELLQE--------------DGVPVVELNNGCICCTL 66 (178)
T ss_dssp EEEEESTTSSHHHHHHHHHH-HHT-TTS-EEEEECSTTSTHHHHHHHHT--------------TT-EEEEECTTTESS-T
T ss_pred EEEEcCCCCCHHHHHHHHHH-Hhc-CCceeEEEEccccccccchhhhcc--------------cceEEEEecCCCccccc
Confidence 44567789999999999999 555 899999998887653332111100 00012222222111110
Q ss_pred CcccccchhhHHHHHHHHHhccc-C--CCCEEEEcCCCCCCcchh-----hhhhhhcCceEEEeeCCchhh-HHHH-HHH
Q 028600 115 SPVVWRGPMVMSALRKMSREVDW-G--NLDILVIDMPPGTGDAQL-----TTTQTLQLSGALIVSTPQDVA-LIDA-RKG 184 (207)
Q Consensus 115 ~~~~~~~~~~~~~l~~~~~~l~~-~--~~D~IiiD~~~~~~~~~~-----~~~~~~~~d~vi~v~~~~~~~-~~~~-~~~ 184 (207)
...+...+..+.. . .+|+|||.+++......+ .+......+.+|.|+++.... ...+ ..+
T Consensus 67 ----------~~~~~~~l~~l~~~~~~~~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~ 136 (178)
T PF02492_consen 67 ----------RDDLVEALRRLLREYEERPDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELL 136 (178)
T ss_dssp ----------TS-HHHHHHHHCCCCHGC-SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHH
T ss_pred ----------HHHHHHHHHHHHHhcCCCcCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhh
Confidence 1123344444331 3 579999999974443333 011122467899999985531 1222 222
Q ss_pred HHHhhhCCCCeeEEEEccccC
Q 028600 185 ITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 185 l~~l~~~~~~~~g~v~N~~~~ 205 (207)
.++++.. . -+|+||.|.
T Consensus 137 ~~Qi~~A--D--vIvlnK~D~ 153 (178)
T PF02492_consen 137 REQIAFA--D--VIVLNKIDL 153 (178)
T ss_dssp HHHHCT---S--EEEEE-GGG
T ss_pred hhcchhc--C--EEEEecccc
Confidence 3344332 2 488899863
No 154
>PLN03127 Elongation factor Tu; Provisional
Probab=97.83 E-value=0.00034 Score=59.04 Aligned_cols=68 Identities=16% Similarity=0.239 Sum_probs=49.6
Q ss_pred CCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCchhhHHHHHHHHHHhhhCCCCeeEEEEccccC
Q 028600 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~~~~~~~~~~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
+++.++++|||+--.-.......+..+|.+++|+++...-.....+.+..+...+.+.+-+++||+|.
T Consensus 122 ~~~~i~~iDtPGh~~f~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~gip~iIvviNKiDl 189 (447)
T PLN03127 122 AKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVVFLNKVDV 189 (447)
T ss_pred CCeEEEEEECCCccchHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEeecc
Confidence 45678999999632211223344457999999999876556677888888888998876678999984
No 155
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=97.82 E-value=6.1e-05 Score=54.18 Aligned_cols=49 Identities=33% Similarity=0.300 Sum_probs=38.4
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCcccccc
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMK 81 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~ 81 (207)
+.+|-+ .+..|+||||+|..|...|.. .|.+|.++|-|.....+..-++
T Consensus 2 g~vIwl-tGlsGsGKtTlA~~L~~~L~~-~g~~~~~LDgD~lR~~l~~dl~ 50 (156)
T PF01583_consen 2 GFVIWL-TGLSGSGKTTLARALERRLFA-RGIKVYLLDGDNLRHGLNADLG 50 (156)
T ss_dssp -EEEEE-ESSTTSSHHHHHHHHHHHHHH-TTS-EEEEEHHHHCTTTTTT--
T ss_pred CEEEEE-ECCCCCCHHHHHHHHHHHHHH-cCCcEEEecCcchhhccCCCCC
Confidence 566777 488899999999999999999 9999999999976655544433
No 156
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.81 E-value=5.9e-05 Score=57.04 Aligned_cols=39 Identities=28% Similarity=0.332 Sum_probs=34.9
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~ 71 (207)
++++.+ .+.+|+|||+++..++...++ .|.+|++||++-
T Consensus 12 g~i~~i-~G~~GsGKT~l~~~~~~~~~~-~g~~v~yi~~e~ 50 (209)
T TIGR02237 12 GTITQI-YGPPGSGKTNICMILAVNAAR-QGKKVVYIDTEG 50 (209)
T ss_pred CeEEEE-ECCCCCCHHHHHHHHHHHHHh-CCCeEEEEECCC
Confidence 566777 579999999999999999999 899999999984
No 157
>PRK00007 elongation factor G; Reviewed
Probab=97.80 E-value=0.00012 Score=65.06 Aligned_cols=67 Identities=16% Similarity=0.075 Sum_probs=52.3
Q ss_pred CCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCchhhHHHHHHHHHHhhhCCCCeeEEEEccccC
Q 028600 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~~~~~~~~~~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
.++.+.++|||+-.....-...++..+|.+++|+++...-..+....+.++.+.+.+.+ +++||+|.
T Consensus 73 ~~~~~~liDTPG~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~~~p~i-v~vNK~D~ 139 (693)
T PRK00007 73 KDHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADKYKVPRI-AFVNKMDR 139 (693)
T ss_pred CCeEEEEEeCCCcHHHHHHHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHHcCCCEE-EEEECCCC
Confidence 57899999999633211223556668999999999877666777888899999999986 99999985
No 158
>PHA02542 41 41 helicase; Provisional
Probab=97.80 E-value=1.5e-05 Score=67.53 Aligned_cols=47 Identities=17% Similarity=0.120 Sum_probs=39.5
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCcccc
Q 028600 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMM 79 (207)
Q Consensus 32 k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~ 79 (207)
.-+.+.++.+|.||||++.++|..+++ .|++|+++.++.....+...
T Consensus 190 G~LiiIaarPgmGKTtfalniA~~~a~-~g~~Vl~fSLEM~~~ql~~R 236 (473)
T PHA02542 190 KTLNVLLAGVNVGKSLGLCSLAADYLQ-QGYNVLYISMEMAEEVIAKR 236 (473)
T ss_pred CcEEEEEcCCCccHHHHHHHHHHHHHh-cCCcEEEEeccCCHHHHHHH
Confidence 345666899999999999999999998 99999999999877544433
No 159
>COG1160 Predicted GTPases [General function prediction only]
Probab=97.78 E-value=0.00032 Score=58.09 Aligned_cols=68 Identities=10% Similarity=0.091 Sum_probs=47.8
Q ss_pred CCCCEEEEcCCCCCCcc---------hhhhhhhhcCceEEEeeCCchhhHHHHHHHHHHhhhCCCCeeEEEEccccCC
Q 028600 138 GNLDILVIDMPPGTGDA---------QLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPVCSFLAQIISSM 206 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~---------~~~~~~~~~~d~vi~v~~~~~~~~~~~~~~l~~l~~~~~~~~g~v~N~~~~~ 206 (207)
..+++.+|||++-.... ..+..++..||.+++|++....-...=..+.+.|.+.+.++ -+|+|++|+.
T Consensus 49 ~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~~~kpv-iLvvNK~D~~ 125 (444)
T COG1160 49 LGREFILIDTGGLDDGDEDELQELIREQALIAIEEADVILFVVDGREGITPADEEIAKILRRSKKPV-ILVVNKIDNL 125 (444)
T ss_pred cCceEEEEECCCCCcCCchHHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCE-EEEEEcccCc
Confidence 56779999999532111 24566677899999999988744444456667777666777 5899999874
No 160
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=97.78 E-value=9.6e-05 Score=52.40 Aligned_cols=42 Identities=24% Similarity=0.197 Sum_probs=32.6
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEE-EEecCCCCCC
Q 028600 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVG-LLDADVYGPS 75 (207)
Q Consensus 32 k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~Vl-liD~d~~~~~ 75 (207)
++|+|++.+ |+||||++..|...|.+ +|++|+ +.+.|..++.
T Consensus 1 pvv~VvG~~-~sGKTTl~~~Li~~l~~-~g~~v~~ik~~~~g~~~ 43 (140)
T PF03205_consen 1 PVVQVVGPK-NSGKTTLIRKLINELKR-RGYRVAVIKHTDHGQFE 43 (140)
T ss_dssp -EEEEEEST-TSSHHHHHHHHHHHHHH-TT--EEEEEE-STTSTT
T ss_pred CEEEEECCC-CCCHHHHHHHHHHHHhH-cCCceEEEEEccCCCcc
Confidence 478898765 99999999999999999 999999 7788874434
No 161
>PRK00049 elongation factor Tu; Reviewed
Probab=97.78 E-value=0.00023 Score=59.26 Aligned_cols=68 Identities=19% Similarity=0.231 Sum_probs=49.3
Q ss_pred CCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCchhhHHHHHHHHHHhhhCCCCeeEEEEccccC
Q 028600 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~~~~~~~~~~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
+.+.++++|||+--.-.......+..+|.+++|+++...-.....+.+..+...+.+.+-+++||+|.
T Consensus 73 ~~~~i~~iDtPG~~~f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~g~p~iiVvvNK~D~ 140 (396)
T PRK00049 73 EKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDM 140 (396)
T ss_pred CCeEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHcCCCEEEEEEeecCC
Confidence 45678999999631111223444557999999999877555677788888888888876578999985
No 162
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=97.76 E-value=0.00032 Score=49.94 Aligned_cols=67 Identities=13% Similarity=0.131 Sum_probs=42.2
Q ss_pred CCCCEEEEcCCCCCCcch--------hhhhhhhcCceEEEeeCCchhhHHHHHHHHHHhhhCCCCeeEEEEccccC
Q 028600 138 GNLDILVIDMPPGTGDAQ--------LTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~--------~~~~~~~~~d~vi~v~~~~~~~~~~~~~~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
..+.+.++|+|+...... ........+|.+++|+++............+.+.+.+.++ -+|+||.|.
T Consensus 43 ~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~pi-iiv~nK~D~ 117 (157)
T cd01894 43 GGREFILIDTGGIEPDDEGISKEIREQAELAIEEADVILFVVDGREGLTPADEEIAKYLRKSKKPV-ILVVNKVDN 117 (157)
T ss_pred CCeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCEEEEEEeccccCCccHHHHHHHHHhcCCCE-EEEEECccc
Confidence 457889999996433211 1123345789999998876532222334556666666666 589999874
No 163
>PRK12739 elongation factor G; Reviewed
Probab=97.76 E-value=0.00017 Score=64.23 Aligned_cols=67 Identities=16% Similarity=0.067 Sum_probs=51.1
Q ss_pred CCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCchhhHHHHHHHHHHhhhCCCCeeEEEEccccC
Q 028600 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~~~~~~~~~~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
+++.++++|||+-.....-...++..+|.+++|+++...-.......+..+.+.+.+.+ +++||+|.
T Consensus 71 ~~~~i~liDTPG~~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~~~p~i-v~iNK~D~ 137 (691)
T PRK12739 71 KGHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKYGVPRI-VFVNKMDR 137 (691)
T ss_pred CCEEEEEEcCCCHHHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEE-EEEECCCC
Confidence 57889999999632211234556668999999999876555666788888888899986 89999985
No 164
>PRK10218 GTP-binding protein; Provisional
Probab=97.74 E-value=0.00034 Score=61.12 Aligned_cols=67 Identities=10% Similarity=0.046 Sum_probs=50.9
Q ss_pred CCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCchhhHHHHHHHHHHhhhCCCCeeEEEEccccC
Q 028600 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~~~~~~~~~~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
+++.+.++|+|+...........+..+|.+++|+++...-.......+..+...+.+.+ +++||.|.
T Consensus 66 ~~~~inliDTPG~~df~~~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~gip~I-VviNKiD~ 132 (607)
T PRK10218 66 NDYRINIVDTPGHADFGGEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKPI-VVINKVDR 132 (607)
T ss_pred CCEEEEEEECCCcchhHHHHHHHHHhCCEEEEEEecccCccHHHHHHHHHHHHcCCCEE-EEEECcCC
Confidence 57889999999643322333456668999999999877656667777778788889985 89999985
No 165
>PRK00089 era GTPase Era; Reviewed
Probab=97.74 E-value=0.00065 Score=54.13 Aligned_cols=67 Identities=15% Similarity=0.142 Sum_probs=42.6
Q ss_pred CCCCEEEEcCCCCCCcc--------hhhhhhhhcCceEEEeeCCchhhHHHHHHHHHHhhhCCCCeeEEEEccccC
Q 028600 138 GNLDILVIDMPPGTGDA--------QLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~--------~~~~~~~~~~d~vi~v~~~~~~~~~~~~~~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
..+.++++|||+..... ......+..+|.+++|++....-......+++.+...+.++ -+|+|++|.
T Consensus 51 ~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~~~pv-ilVlNKiDl 125 (292)
T PRK00089 51 DDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLKDVDLVLFVVDADEKIGPGDEFILEKLKKVKTPV-ILVLNKIDL 125 (292)
T ss_pred CCceEEEEECCCCCCchhHHHHHHHHHHHHHHhcCCEEEEEEeCCCCCChhHHHHHHHHhhcCCCE-EEEEECCcC
Confidence 44788999998643211 11223455789999999887632234455566666666676 488899874
No 166
>PRK04296 thymidine kinase; Provisional
Probab=97.72 E-value=0.00014 Score=54.25 Aligned_cols=36 Identities=22% Similarity=0.196 Sum_probs=30.5
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEe
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLD 68 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD 68 (207)
++++.+ .+..|+||||.+..++..++. .|++|+++.
T Consensus 2 g~i~li-tG~~GsGKTT~~l~~~~~~~~-~g~~v~i~k 37 (190)
T PRK04296 2 AKLEFI-YGAMNSGKSTELLQRAYNYEE-RGMKVLVFK 37 (190)
T ss_pred cEEEEE-ECCCCCHHHHHHHHHHHHHHH-cCCeEEEEe
Confidence 444444 678899999999999999999 999999993
No 167
>COG1159 Era GTPase [General function prediction only]
Probab=97.71 E-value=0.00018 Score=56.54 Aligned_cols=111 Identities=18% Similarity=0.197 Sum_probs=72.5
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccccCCccccccccceecccccceeecccccCC
Q 028600 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGFLVP 112 (207)
Q Consensus 33 ~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (207)
.+++ -+++.+||||+.-+| .|+|+.++---++... +...|.
T Consensus 8 fVaI-iGrPNvGKSTLlN~l-------~G~KisIvS~k~QTTR-~~I~GI------------------------------ 48 (298)
T COG1159 8 FVAI-IGRPNVGKSTLLNAL-------VGQKISIVSPKPQTTR-NRIRGI------------------------------ 48 (298)
T ss_pred EEEE-EcCCCCcHHHHHHHH-------hcCceEeecCCcchhh-hheeEE------------------------------
Confidence 4566 489999999997765 7999999865554421 111111
Q ss_pred CCCcccccchhhHHHHHHHHHhcccCCCCEEEEcCCCCCCcc--------hhhhhhhhcCceEEEeeCCchhhHHHHHHH
Q 028600 113 SSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDA--------QLTTTQTLQLSGALIVSTPQDVALIDARKG 184 (207)
Q Consensus 113 ~~~~~~~~~~~~~~~l~~~~~~l~~~~~D~IiiD~~~~~~~~--------~~~~~~~~~~d~vi~v~~~~~~~~~~~~~~ 184 (207)
... ..+-+|++|||+-.... ..+..++..+|.++++++++..--..-...
T Consensus 49 -------------------~t~---~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~dvDlilfvvd~~~~~~~~d~~i 106 (298)
T COG1159 49 -------------------VTT---DNAQIIFVDTPGIHKPKHALGELMNKAARSALKDVDLILFVVDADEGWGPGDEFI 106 (298)
T ss_pred -------------------EEc---CCceEEEEeCCCCCCcchHHHHHHHHHHHHHhccCcEEEEEEeccccCCccHHHH
Confidence 111 67788888888532211 123455557899999988887444466667
Q ss_pred HHHhhhCCCCeeEEEEccccC
Q 028600 185 ITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 185 l~~l~~~~~~~~g~v~N~~~~ 205 (207)
++.+.+.+.++ -+++|++|+
T Consensus 107 l~~lk~~~~pv-il~iNKID~ 126 (298)
T COG1159 107 LEQLKKTKTPV-ILVVNKIDK 126 (298)
T ss_pred HHHHhhcCCCe-EEEEEcccc
Confidence 77777766676 488888874
No 168
>PRK07667 uridine kinase; Provisional
Probab=97.67 E-value=0.00013 Score=54.61 Aligned_cols=40 Identities=20% Similarity=0.348 Sum_probs=35.8
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~ 72 (207)
..+|++ ++.+|+||||++..|+..+.+ .|.+|.++++|-.
T Consensus 17 ~~iIgI-~G~~gsGKStla~~L~~~l~~-~~~~~~~i~~Dd~ 56 (193)
T PRK07667 17 RFILGI-DGLSRSGKTTFVANLKENMKQ-EGIPFHIFHIDDY 56 (193)
T ss_pred CEEEEE-ECCCCCCHHHHHHHHHHHHHh-CCCcEEEEEcCcc
Confidence 467777 599999999999999999999 9999999999964
No 169
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.66 E-value=0.0016 Score=49.22 Aligned_cols=41 Identities=24% Similarity=0.371 Sum_probs=33.3
Q ss_pred CCCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCC
Q 028600 29 GVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (207)
Q Consensus 29 ~~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~ 73 (207)
..+.+|++ ++.+|+||||++..|+..+ .+..+.+++.|...
T Consensus 4 ~~~~iI~I-~G~sGsGKTTl~~~l~~~l---~~~~~~~i~~D~~~ 44 (209)
T PRK05480 4 KKPIIIGI-AGGSGSGKTTVASTIYEEL---GDESIAVIPQDSYY 44 (209)
T ss_pred CCCEEEEE-ECCCCCCHHHHHHHHHHHh---CCCceEEEeCCccc
Confidence 44678888 6899999999999999987 35678999988643
No 170
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=97.66 E-value=0.00028 Score=61.54 Aligned_cols=67 Identities=10% Similarity=0.093 Sum_probs=51.1
Q ss_pred CCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCchhhHHHHHHHHHHhhhCCCCeeEEEEccccC
Q 028600 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~~~~~~~~~~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
+++.+.|+|||+-.+........+..+|.+++|+++.......+...+..+.+.+++++ +++||.|.
T Consensus 62 ~~~kinlIDTPGh~DF~~ev~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~~ip~I-VviNKiD~ 128 (594)
T TIGR01394 62 NGTKINIVDTPGHADFGGEVERVLGMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPI-VVINKIDR 128 (594)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHHCCCCEE-EEEECCCC
Confidence 56889999999532211222445667999999999987666777888888888899874 89999985
No 171
>KOG1534 consensus Putative transcription factor FET5 [Transcription]
Probab=97.65 E-value=0.00013 Score=54.53 Aligned_cols=45 Identities=18% Similarity=0.182 Sum_probs=36.7
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCcc
Q 028600 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVP 77 (207)
Q Consensus 32 k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~ 77 (207)
|.=.+.-+..|+||||.+.++-...-. .|+++-+|++||.+-.+.
T Consensus 3 ~ya~lV~GpAgSGKSTyC~~~~~h~e~-~gRs~~vVNLDPAae~f~ 47 (273)
T KOG1534|consen 3 RYAQLVMGPAGSGKSTYCSSMYEHCET-VGRSVHVVNLDPAAEHFN 47 (273)
T ss_pred ceeEEEEccCCCCcchHHHHHHHHHHh-hCceeEEeecCHHHHhhC
Confidence 333344577899999999999999988 999999999999775543
No 172
>PRK00093 GTP-binding protein Der; Reviewed
Probab=97.64 E-value=0.0006 Score=57.44 Aligned_cols=67 Identities=12% Similarity=0.072 Sum_probs=43.1
Q ss_pred CCCCEEEEcCCCCCCcc--------hhhhhhhhcCceEEEeeCCchhhHHHHHHHHHHhhhCCCCeeEEEEccccC
Q 028600 138 GNLDILVIDMPPGTGDA--------QLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~--------~~~~~~~~~~d~vi~v~~~~~~~~~~~~~~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
.++.+.|+|||+..... ......+..+|.+++|+++...-...-..+.+++++.+.+++ +|+|+.|.
T Consensus 47 ~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~~~pii-lv~NK~D~ 121 (435)
T PRK00093 47 LGREFILIDTGGIEPDDDGFEKQIREQAELAIEEADVILFVVDGRAGLTPADEEIAKILRKSNKPVI-LVVNKVDG 121 (435)
T ss_pred CCcEEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCcEE-EEEECccC
Confidence 44778999998543211 112334557999999998875322223355666777777764 89999884
No 173
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=97.64 E-value=0.00043 Score=61.68 Aligned_cols=67 Identities=15% Similarity=0.079 Sum_probs=49.7
Q ss_pred CCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCchhhHHHHHHHHHHhhhCCCCeeEEEEccccC
Q 028600 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~~~~~~~~~~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
+++.+.++|||+-..........+..+|.+++|++....-.......+..+.+.+.+++ +++||.|.
T Consensus 73 ~~~~i~liDTPG~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~i-vviNK~D~ 139 (689)
T TIGR00484 73 KGHRINIIDTPGHVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSETVWRQANRYEVPRI-AFVNKMDK 139 (689)
T ss_pred CCeEEEEEECCCCcchhHHHHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHHcCCCEE-EEEECCCC
Confidence 57889999999643322233455668999999999876544556677778888888885 89999985
No 174
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=97.61 E-value=0.00052 Score=50.30 Aligned_cols=41 Identities=27% Similarity=0.363 Sum_probs=35.1
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCC
Q 028600 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (207)
Q Consensus 30 ~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~ 72 (207)
++++++|+ +..|+||||+...|...+.. .|.+|..|-.+..
T Consensus 5 ~~~ii~iv-G~sgsGKTTLi~~li~~l~~-~g~~vg~Ik~~~~ 45 (173)
T PRK10751 5 MIPLLAIA-AWSGTGKTTLLKKLIPALCA-RGIRPGLIKHTHH 45 (173)
T ss_pred CceEEEEE-CCCCChHHHHHHHHHHHHhh-cCCeEEEEEEcCC
Confidence 36788885 67899999999999999998 9999999976543
No 175
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=97.58 E-value=0.00071 Score=50.51 Aligned_cols=67 Identities=10% Similarity=0.103 Sum_probs=44.8
Q ss_pred CCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCchhhHHHHHHHHHHhhhCCCCeeEEEEccccC
Q 028600 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~~~~~~~~~~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
+.+.+.++|+|+..............+|.+++|++............+..+...+.++ -+++||.|.
T Consensus 63 ~~~~~~l~DtpG~~~~~~~~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~~~~p~-iiv~NK~Dl 129 (194)
T cd01891 63 KDTKINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALELGLKP-IVVINKIDR 129 (194)
T ss_pred CCEEEEEEECCCcHHHHHHHHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHHcCCCE-EEEEECCCC
Confidence 5678899999964322223334455789999999887644444455566666667776 588999984
No 176
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=97.58 E-value=0.0004 Score=49.86 Aligned_cols=66 Identities=9% Similarity=0.062 Sum_probs=35.1
Q ss_pred CCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCchhhHHHHHHHHHHhhhCCCCeeEEEEcccc
Q 028600 139 NLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPVCSFLAQIIS 204 (207)
Q Consensus 139 ~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~~~~~~~~~~l~~l~~~~~~~~g~v~N~~~ 204 (207)
.+.+.++|+|+.-............+|.+++|++............+..++..+.+.+-+++|+.|
T Consensus 50 ~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~D 115 (164)
T cd04171 50 GKRLGFIDVPGHEKFIKNMLAGAGGIDLVLLVVAADEGIMPQTREHLEILELLGIKRGLVVLTKAD 115 (164)
T ss_pred CcEEEEEECCChHHHHHHHHhhhhcCCEEEEEEECCCCccHhHHHHHHHHHHhCCCcEEEEEECcc
Confidence 346778888753211111122334678888888876532233333334444445433457788876
No 177
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=97.58 E-value=5.6e-05 Score=56.30 Aligned_cols=45 Identities=27% Similarity=0.335 Sum_probs=32.2
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHh---------CCCeEEEEecCCCCCCccc
Q 028600 34 IAVASGKGGVGKSTTAVNLAVALASK---------CQLKVGLLDADVYGPSVPM 78 (207)
Q Consensus 34 I~v~s~kgG~GkTt~a~~LA~~la~~---------~g~~VlliD~d~~~~~l~~ 78 (207)
+.+..+.+|+||||++.++|..++.- .+.+|++|+++.....+..
T Consensus 34 l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~~~~~~ 87 (193)
T PF13481_consen 34 LTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSESQIAR 87 (193)
T ss_dssp EEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-HHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCHHHHHH
Confidence 55557999999999999999999961 4679999999986544433
No 178
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.57 E-value=0.00032 Score=54.08 Aligned_cols=40 Identities=20% Similarity=0.262 Sum_probs=34.9
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~ 72 (207)
+.++.+ .+.+|+|||+++.++++..++ .|.+|++++++-.
T Consensus 25 g~~~~i-~G~~GsGKt~l~~~~~~~~~~-~g~~~~y~~~e~~ 64 (234)
T PRK06067 25 PSLILI-EGDHGTGKSVLSQQFVYGALK-QGKKVYVITTENT 64 (234)
T ss_pred CcEEEE-ECCCCCChHHHHHHHHHHHHh-CCCEEEEEEcCCC
Confidence 566666 489999999999999999888 8999999999743
No 179
>COG0857 Pta BioD-like N-terminal domain of phosphotransacetylase [General function prediction only]
Probab=97.57 E-value=0.0011 Score=54.02 Aligned_cols=38 Identities=26% Similarity=0.406 Sum_probs=35.9
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEe
Q 028600 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLD 68 (207)
Q Consensus 30 ~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD 68 (207)
|++.+.+++...|+|||+++.+|++.|.+ +|.+|.++-
T Consensus 1 m~~~l~l~p~~~~~G~tsi~lgLl~~l~~-k~~kva~~k 38 (354)
T COG0857 1 MSRTLLLIPTETGVGKTSISLGLLRALEQ-KGLKVAYFK 38 (354)
T ss_pred CcceEEEeccCCCccHHHHHHHHHHHHHH-cCceeEEEe
Confidence 47899999999999999999999999999 999999983
No 180
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=97.57 E-value=0.00024 Score=51.50 Aligned_cols=41 Identities=29% Similarity=0.344 Sum_probs=35.9
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~ 73 (207)
|++|+|++. .|+||||++..|...+.. .|++|.+|..|...
T Consensus 1 m~vi~i~G~-~gsGKTTli~~L~~~l~~-~g~~V~~iK~~~~~ 41 (159)
T cd03116 1 MKVIGFVGY-SGSGKTTLLEKLIPALSA-RGLRVAVIKHDHHD 41 (159)
T ss_pred CeEEEEECC-CCCCHHHHHHHHHHHHHH-cCCcEEEEEecCCc
Confidence 578999766 599999999999999999 99999999877654
No 181
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.56 E-value=0.002 Score=49.55 Aligned_cols=41 Identities=20% Similarity=0.282 Sum_probs=35.0
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~ 73 (207)
+.++.+ .+..|+||||++.+++..+++ .|.++++++++...
T Consensus 24 g~~~~i-~G~~G~GKTtl~~~~~~~~~~-~g~~~~yi~~e~~~ 64 (230)
T PRK08533 24 GSLILI-EGDESTGKSILSQRLAYGFLQ-NGYSVSYVSTQLTT 64 (230)
T ss_pred CcEEEE-ECCCCCCHHHHHHHHHHHHHh-CCCcEEEEeCCCCH
Confidence 456666 689999999999999999998 89999999977644
No 182
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=97.55 E-value=0.00063 Score=49.78 Aligned_cols=36 Identities=28% Similarity=0.361 Sum_probs=29.7
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEec
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDA 69 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~ 69 (207)
+.+..++ ..|.||||.|..+|...+. .|++|+++=+
T Consensus 6 Gli~v~~--g~GkGKtt~a~g~a~ra~~-~g~~v~ivQF 41 (173)
T TIGR00708 6 GIIIVHT--GNGKGKTTAAFGMALRALG-HGKKVGVIQF 41 (173)
T ss_pred cEEEEEC--CCCCChHHHHHHHHHHHHH-CCCeEEEEEE
Confidence 4444443 3899999999999999999 9999998844
No 183
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=97.54 E-value=0.00072 Score=48.86 Aligned_cols=33 Identities=33% Similarity=0.482 Sum_probs=27.4
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEe
Q 028600 34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLD 68 (207)
Q Consensus 34 I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD 68 (207)
|-|+ ...|.||||.|..+|...+. .|+||+++=
T Consensus 5 i~vy-~g~G~Gkt~~a~g~~~ra~~-~g~~v~~vQ 37 (159)
T cd00561 5 IQVY-TGNGKGKTTAALGLALRALG-HGYRVGVVQ 37 (159)
T ss_pred EEEE-CCCCCCHHHHHHHHHHHHHH-CCCeEEEEE
Confidence 3443 33499999999999999999 999999953
No 184
>PRK06696 uridine kinase; Validated
Probab=97.53 E-value=0.00024 Score=54.38 Aligned_cols=41 Identities=24% Similarity=0.157 Sum_probs=35.3
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~ 73 (207)
+.+|+| ++.+|+||||+|..|+..|.. .|.+|+.+-+|-..
T Consensus 22 ~~iI~I-~G~sgsGKSTlA~~L~~~l~~-~g~~v~~~~~Ddf~ 62 (223)
T PRK06696 22 PLRVAI-DGITASGKTTFADELAEEIKK-RGRPVIRASIDDFH 62 (223)
T ss_pred ceEEEE-ECCCCCCHHHHHHHHHHHHHH-cCCeEEEecccccc
Confidence 567777 789999999999999999998 89999998777544
No 185
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.52 E-value=0.00024 Score=49.23 Aligned_cols=42 Identities=31% Similarity=0.275 Sum_probs=33.9
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGP 74 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~ 74 (207)
+..+.++ +..|+||||++..+|..+.. .+..+++++++....
T Consensus 2 ~~~~~l~-G~~G~GKTtl~~~l~~~~~~-~~~~~~~~~~~~~~~ 43 (148)
T smart00382 2 GEVILIV-GPPGSGKTTLARALARELGP-PGGGVIYIDGEDILE 43 (148)
T ss_pred CCEEEEE-CCCCCcHHHHHHHHHhccCC-CCCCEEEECCEEccc
Confidence 3456664 66999999999999999998 667899998886553
No 186
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.52 E-value=0.00023 Score=54.17 Aligned_cols=41 Identities=34% Similarity=0.426 Sum_probs=35.1
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~ 73 (207)
+.++.+ .+.+|+||||++.++|..++. .|.+|+++|++...
T Consensus 19 g~i~~i-~G~~GsGKT~l~~~~a~~~~~-~g~~v~yi~~e~~~ 59 (218)
T cd01394 19 GTVTQV-YGPPGTGKTNIAIQLAVETAG-QGKKVAYIDTEGLS 59 (218)
T ss_pred CeEEEE-ECCCCCCHHHHHHHHHHHHHh-cCCeEEEEECCCCC
Confidence 555666 689999999999999999999 89999999987543
No 187
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=97.51 E-value=0.00028 Score=54.60 Aligned_cols=44 Identities=27% Similarity=0.298 Sum_probs=34.7
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHH-----------hCCCeEEEEecCCCCCCcc
Q 028600 34 IAVASGKGGVGKSTTAVNLAVALAS-----------KCQLKVGLLDADVYGPSVP 77 (207)
Q Consensus 34 I~v~s~kgG~GkTt~a~~LA~~la~-----------~~g~~VlliD~d~~~~~l~ 77 (207)
+++..+.+|+|||+++..+|.+.|. ..+.+|++++++-....+.
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~Ed~~~~i~ 57 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSAEDPREEIH 57 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEECCCCHHHHH
Confidence 5677899999999999999998873 1467899999886554433
No 188
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=97.51 E-value=0.001 Score=55.40 Aligned_cols=68 Identities=21% Similarity=0.246 Sum_probs=47.3
Q ss_pred CCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCchhhHHHHHHHHHHhhhCCCCeeEEEEccccC
Q 028600 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~~~~~~~~~~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
..+.+.++|+|+--.-.......+..+|.+++|+++...-.....+.+..+...+++.+-+++||+|.
T Consensus 73 ~~~~~~liDtpGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~gi~~iIvvvNK~Dl 140 (394)
T TIGR00485 73 ENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQVGVPYIVVFLNKCDM 140 (394)
T ss_pred CCEEEEEEECCchHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEeccc
Confidence 45678899999632111122334446799999999876555666778888888888876578999984
No 189
>cd03113 CTGs CTP synthetase (CTPs) is a two-domain protein, which consists of an N-terminal synthetase domain and C-terminal glutaminase domain. The enzymes hydrolyze the amide bond of glutamine to ammonia and glutamate at the glutaminase domains and transfer nascent ammonia to the acceptor substrate at the synthetase domain to form an aminated product. Glutaminase domains have evolved from the same ancestor, whereas the synthetase domains are evolutionarily unrelated and have different functions. This protein family is classified based on the N-terminal synthetase domain.
Probab=97.50 E-value=0.0042 Score=47.68 Aligned_cols=162 Identities=13% Similarity=0.141 Sum_probs=88.4
Q ss_pred EeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccccC-----------Ccccc--ccccceecccccce
Q 028600 37 ASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQ-----------KPEVT--KDMKMVPIENYGVK 103 (207)
Q Consensus 37 ~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~~-----------~~~~~--~~~~~~~~~~~~~~ 103 (207)
-+-..|.||-.+|+.++..|-. +|.+|..+-+||+-+--+-.+.... +..++ ..+......-..-.
T Consensus 7 Ggv~s~lgkgi~~as~g~ll~~-~g~~v~~~K~DpYlNvd~GtmsP~~HGEvfVt~DG~E~DlDlG~YERfl~~~l~~~~ 85 (255)
T cd03113 7 GGVVSSLGKGITAASLGRLLKA-RGLKVTAQKLDPYLNVDPGTMSPYQHGEVFVTDDGAETDLDLGHYERFLDTNLSRDN 85 (255)
T ss_pred CCcccCcchHHHHHHHHHHHHH-CCCeEEEEeecccccCCCCCCCCccceeEEEccCCCcccccccchhhhcCCCCcCcc
Confidence 3456899999999999999999 9999999999986522111111110 00000 00001100000000
Q ss_pred eec-------------ccccCCCCCcccccchhhHHHHHHHHHhcc-cCCCCEEEEcCCCCCCcchh--hhhhhh-----
Q 028600 104 CMS-------------MGFLVPSSSPVVWRGPMVMSALRKMSREVD-WGNLDILVIDMPPGTGDAQL--TTTQTL----- 162 (207)
Q Consensus 104 ~~~-------------~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~-~~~~D~IiiD~~~~~~~~~~--~~~~~~----- 162 (207)
.+. .|..+.... .--+-..+.+++.+..+. ...+|++|++.++..+|-.- -+.+++
T Consensus 86 niTtGkiy~~vi~kER~G~ylG~TV---QviPHit~eIk~~i~~~~~~~~~dv~i~EiGGTvGDiEs~pf~EAirq~~~~ 162 (255)
T cd03113 86 NITTGKIYSSVIEKERRGDYLGKTV---QVIPHITDEIKERIRRVAEKSGADVVIVEIGGTVGDIESLPFLEAIRQMKLE 162 (255)
T ss_pred CcChHHHHHHHHHHhhccCccCceE---EECcCccHHHHHHHHHhhccCCCCEEEEEeCCccccccccHHHHHHHHHHHH
Confidence 000 010000000 001112355566655543 16899999999987664321 122222
Q ss_pred ---------cCceEEEeeCCchhhHHHHHHHHHHhhhCCCCeeEEEEcc
Q 028600 163 ---------QLSGALIVSTPQDVALIDARKGITMFSKVQVPVCSFLAQI 202 (207)
Q Consensus 163 ---------~~d~vi~v~~~~~~~~~~~~~~l~~l~~~~~~~~g~v~N~ 202 (207)
+...|-.+-..+...-.-++..++.+++.|+++.++|+|.
T Consensus 163 ~g~~n~~~ihvt~vp~~~~~gE~KTKPtQhSVeaLRs~GIqPDgIVcRs 211 (255)
T cd03113 163 LGRENVLFIHVTLVPYLKAAGELKTKPTQHSVKELRSIGIQPDILVCRS 211 (255)
T ss_pred hCcCcEEEEEEeeeeeecCCCccccCchHHHHHHHHhCCCCCCEEEEeC
Confidence 1112222233455566788899999999999999999997
No 190
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=97.50 E-value=0.0002 Score=58.65 Aligned_cols=38 Identities=34% Similarity=0.454 Sum_probs=32.7
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~ 71 (207)
+..|.+ ++.+|+||||+...+|..+|+ .+ +|++|--.-
T Consensus 93 Gs~iLI-gGdPGIGKSTLLLQva~~lA~-~~-~vLYVsGEE 130 (456)
T COG1066 93 GSVILI-GGDPGIGKSTLLLQVAARLAK-RG-KVLYVSGEE 130 (456)
T ss_pred ccEEEE-ccCCCCCHHHHHHHHHHHHHh-cC-cEEEEeCCc
Confidence 344555 899999999999999999999 78 999997664
No 191
>PRK12735 elongation factor Tu; Reviewed
Probab=97.49 E-value=0.0011 Score=55.33 Aligned_cols=68 Identities=21% Similarity=0.252 Sum_probs=47.4
Q ss_pred CCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCchhhHHHHHHHHHHhhhCCCCeeEEEEccccC
Q 028600 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~~~~~~~~~~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
++..++++|+|+--.-.......+..+|.+++|+++...-.....+.+..+...+++.+-+++||.|.
T Consensus 73 ~~~~i~~iDtPGh~~f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~gi~~iivvvNK~Dl 140 (396)
T PRK12735 73 ANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDM 140 (396)
T ss_pred CCcEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEecCC
Confidence 45568999999621111122344556899999999876545666777888888888876567999884
No 192
>CHL00071 tufA elongation factor Tu
Probab=97.49 E-value=0.0015 Score=54.74 Aligned_cols=68 Identities=19% Similarity=0.232 Sum_probs=49.6
Q ss_pred CCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCchhhHHHHHHHHHHhhhCCCCeeEEEEccccC
Q 028600 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~~~~~~~~~~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
+.+.++++|+|+--.-.......+..+|.+++|+++...-.....+.+..+...+.+.+-+++||+|.
T Consensus 73 ~~~~~~~iDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~g~~~iIvvvNK~D~ 140 (409)
T CHL00071 73 ENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQVGVPNIVVFLNKEDQ 140 (409)
T ss_pred CCeEEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEccCC
Confidence 45678999999621111223445557999999999887656777788888888888865688999985
No 193
>PRK03846 adenylylsulfate kinase; Provisional
Probab=97.49 E-value=0.0023 Score=47.99 Aligned_cols=44 Identities=34% Similarity=0.282 Sum_probs=37.3
Q ss_pred CCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCC
Q 028600 28 DGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (207)
Q Consensus 28 ~~~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~ 73 (207)
+..+.+|.++ +..|+||||++..|+..+.. .|..++++|.|...
T Consensus 21 ~~~~~~i~i~-G~~GsGKSTla~~l~~~l~~-~~~~~~~ld~d~~~ 64 (198)
T PRK03846 21 GHKGVVLWFT-GLSGSGKSTVAGALEEALHE-LGVSTYLLDGDNVR 64 (198)
T ss_pred CCCCEEEEEE-CCCCCCHHHHHHHHHHHHHh-CCCCEEEEcCEeHH
Confidence 3447888886 66799999999999999998 89999999988644
No 194
>PRK12736 elongation factor Tu; Reviewed
Probab=97.49 E-value=0.00092 Score=55.63 Aligned_cols=68 Identities=19% Similarity=0.242 Sum_probs=48.7
Q ss_pred CCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCchhhHHHHHHHHHHhhhCCCCeeEEEEccccC
Q 028600 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~~~~~~~~~~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
+.+.++++|+|+--.-.......+..+|.+++|+++...-.....+.+..+...+.+.+-+++||+|.
T Consensus 73 ~~~~i~~iDtPGh~~f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~g~~~~IvviNK~D~ 140 (394)
T PRK12736 73 EKRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYLVVFLNKVDL 140 (394)
T ss_pred CCcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCEEEEEEEecCC
Confidence 46788999999621111222444556899999999876555667777888888888866688999984
No 195
>PTZ00416 elongation factor 2; Provisional
Probab=97.46 E-value=0.00052 Score=62.31 Aligned_cols=67 Identities=13% Similarity=0.100 Sum_probs=51.7
Q ss_pred CCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCchhhHHHHHHHHHHhhhCCCCeeEEEEccccC
Q 028600 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~~~~~~~~~~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
.+|-+.++|||+-..-..-...++..+|.+|+|+++...-......++.++.+.+.+++ +++||+|.
T Consensus 90 ~~~~i~liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~~~~~~~~~p~i-v~iNK~D~ 156 (836)
T PTZ00416 90 QPFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALQERIRPV-LFINKVDR 156 (836)
T ss_pred CceEEEEEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcCccHHHHHHHHHHcCCCEE-EEEEChhh
Confidence 35778999999743322334566678999999999888766777888888888888874 88999986
No 196
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=97.46 E-value=0.0023 Score=50.50 Aligned_cols=66 Identities=15% Similarity=0.126 Sum_probs=41.8
Q ss_pred CCCCEEEEcCCCCCCcch--------hhhhhhhcCceEEEeeCCchhhHHHHHHHHHHhhhCCCCeeEEEEccccC
Q 028600 138 GNLDILVIDMPPGTGDAQ--------LTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~--------~~~~~~~~~d~vi~v~~~~~~~~~~~~~~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
.++.++++|||+-..... .....+..+|.+++|++++...... ...++.+...+.++ -+|+|+.|.
T Consensus 46 ~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aDvvl~VvD~~~~~~~~-~~i~~~l~~~~~p~-ilV~NK~Dl 119 (270)
T TIGR00436 46 GASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVDLILFVVDSDQWNGDG-EFVLTKLQNLKRPV-VLTRNKLDN 119 (270)
T ss_pred CCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCCCCchH-HHHHHHHHhcCCCE-EEEEECeeC
Confidence 345688999986332100 1123455789999998887643333 45566666667776 488999874
No 197
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=97.45 E-value=0.0016 Score=46.62 Aligned_cols=38 Identities=37% Similarity=0.322 Sum_probs=32.3
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCC
Q 028600 34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (207)
Q Consensus 34 I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~ 73 (207)
|.+ .+.+|+||||++..|+..+.. .|.++.++|.|...
T Consensus 2 i~i-~G~~GsGKSTla~~L~~~l~~-~g~~~~~i~~d~~r 39 (149)
T cd02027 2 IWL-TGLSGSGKSTIARALEEKLFQ-RGRPVYVLDGDNVR 39 (149)
T ss_pred EEE-EcCCCCCHHHHHHHHHHHHHH-cCCCEEEEcCHHHH
Confidence 344 589999999999999999998 89999999877544
No 198
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=97.44 E-value=0.0022 Score=51.75 Aligned_cols=144 Identities=17% Similarity=0.169 Sum_probs=77.8
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccccCCccccccccceecccccceeecccccCCC
Q 028600 34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGFLVPS 113 (207)
Q Consensus 34 I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (207)
+.+.++-=|+||||+.-+|... . .|.|+++|-.|+..-++...+-.. ....+.-+..|.+-=.
T Consensus 6 v~iltGFLGaGKTTll~~ll~~--~-~~~riaVi~NEfG~v~iD~~ll~~--------------~~~~v~eL~~GCiCCs 68 (318)
T PRK11537 6 VTLLTGFLGAGKTTLLRHILNE--Q-HGYKIAVIENEFGEVSVDDQLIGD--------------RATQIKTLTNGCICCS 68 (318)
T ss_pred EEEEEECCCCCHHHHHHHHHhc--c-cCCcccccccCcCCccccHHHHhC--------------cCceEEEECCCEEEEc
Confidence 4445688899999999999763 4 799999998887543332111000 0001111211110000
Q ss_pred CCcccccchhhHHHHHHHHHhcccC--CCCEEEEcCCCCCCcchhhhhhh---------hcCceEEEeeCCchhhH--HH
Q 028600 114 SSPVVWRGPMVMSALRKMSREVDWG--NLDILVIDMPPGTGDAQLTTTQT---------LQLSGALIVSTPQDVAL--ID 180 (207)
Q Consensus 114 ~~~~~~~~~~~~~~l~~~~~~l~~~--~~D~IiiD~~~~~~~~~~~~~~~---------~~~d~vi~v~~~~~~~~--~~ 180 (207)
........+.++++....+ .+|+|||.+.+....... +..+ ...+.+|.|+++..... ..
T Consensus 69 ------~~~~l~~~l~~l~~~~~~~~~~~d~IvIEttG~a~p~~i-~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~ 141 (318)
T PRK11537 69 ------RSNELEDALLDLLDNLDKGNIQFDRLVIECTGMADPGPI-IQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQ 141 (318)
T ss_pred ------cCchHHHHHHHHHHHHhccCCCCCEEEEECCCccCHHHH-HHHHhcChhhcccEEeccEEEEEEhhhhhhhccc
Confidence 0123456666666544311 599999999975543332 1111 13478999999875321 11
Q ss_pred HHHHHHHhhhCCCCeeEEEEccccC
Q 028600 181 ARKGITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 181 ~~~~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
.....++++.. --+|+||.|.
T Consensus 142 ~~~~~~Qi~~A----D~IvlnK~Dl 162 (318)
T PRK11537 142 FTIAQSQVGYA----DRILLTKTDV 162 (318)
T ss_pred cHHHHHHHHhC----CEEEEecccc
Confidence 11223333332 2488899874
No 199
>PRK05973 replicative DNA helicase; Provisional
Probab=97.42 E-value=0.00034 Score=53.93 Aligned_cols=42 Identities=14% Similarity=0.157 Sum_probs=35.9
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCC
Q 028600 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPS 75 (207)
Q Consensus 33 ~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~ 75 (207)
.+.+.++.+|+|||+++.++|...++ .|.+|+++.++.....
T Consensus 65 sl~LIaG~PG~GKT~lalqfa~~~a~-~Ge~vlyfSlEes~~~ 106 (237)
T PRK05973 65 DLVLLGARPGHGKTLLGLELAVEAMK-SGRTGVFFTLEYTEQD 106 (237)
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHh-cCCeEEEEEEeCCHHH
Confidence 34455899999999999999999999 8999999999876433
No 200
>PRK13351 elongation factor G; Reviewed
Probab=97.40 E-value=0.00081 Score=59.95 Aligned_cols=67 Identities=15% Similarity=0.100 Sum_probs=50.2
Q ss_pred CCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCchhhHHHHHHHHHHhhhCCCCeeEEEEccccC
Q 028600 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~~~~~~~~~~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
..+.+.++|||+..+........+..+|.+++|+++...-.......+..+.+.+.+++ +++||.|.
T Consensus 71 ~~~~i~liDtPG~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~i-iviNK~D~ 137 (687)
T PRK13351 71 DNHRINLIDTPGHIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADRYGIPRL-IFINKMDR 137 (687)
T ss_pred CCEEEEEEECCCcHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEE-EEEECCCC
Confidence 46789999999643322334556668999999999877555556677777888888875 89999985
No 201
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.40 E-value=0.00085 Score=51.86 Aligned_cols=43 Identities=16% Similarity=0.074 Sum_probs=36.4
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPS 75 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~ 75 (207)
+..+.| .+.+|+|||+++.++++..++ .|.+|++|.++.....
T Consensus 21 gs~~lI-~G~pGsGKT~la~~~l~~~~~-~ge~~lyvs~ee~~~~ 63 (237)
T TIGR03877 21 RNVVLL-SGGPGTGKSIFSQQFLWNGLQ-MGEPGIYVALEEHPVQ 63 (237)
T ss_pred CeEEEE-EcCCCCCHHHHHHHHHHHHHH-cCCcEEEEEeeCCHHH
Confidence 556666 689999999999999999888 9999999998874433
No 202
>PF02606 LpxK: Tetraacyldisaccharide-1-P 4'-kinase; InterPro: IPR003758 Tetraacyldisaccharide 4'-kinase phosphorylates the 4'-position of a tetraacyldisaccharide 1-phosphate precursor (DS-1-P) of lipid A, but the enzyme has not yet been purified because of instability []. This enzyme is involved in the synthesis of lipid A portion of the bacterial lipopolysaccharide layer (LPS).; GO: 0005524 ATP binding, 0009029 tetraacyldisaccharide 4'-kinase activity, 0009245 lipid A biosynthetic process
Probab=97.40 E-value=0.0056 Score=49.61 Aligned_cols=42 Identities=26% Similarity=0.277 Sum_probs=36.0
Q ss_pred CeEEEEEeC-CCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCC
Q 028600 31 KDVIAVASG-KGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (207)
Q Consensus 31 ~k~I~v~s~-kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~ 73 (207)
.++|+|-+. .||+|||-++..||..|.+ +|++|.+|-=...+
T Consensus 35 vpVIsVGNltvGGTGKTP~v~~L~~~L~~-~G~~~~IlSRGYg~ 77 (326)
T PF02606_consen 35 VPVISVGNLTVGGTGKTPLVIWLARLLQA-RGYRPAILSRGYGR 77 (326)
T ss_pred CcEEEEcccccCCCCchHHHHHHHHHHHh-cCCceEEEcCCCCC
Confidence 568888774 6899999999999999999 99999999665543
No 203
>PLN03126 Elongation factor Tu; Provisional
Probab=97.38 E-value=0.0018 Score=55.13 Aligned_cols=68 Identities=19% Similarity=0.227 Sum_probs=49.5
Q ss_pred CCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCchhhHHHHHHHHHHhhhCCCCeeEEEEccccC
Q 028600 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~~~~~~~~~~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
+++.+.++|+|+--.-.......+..+|.+++|+++...-.....+.+..+...+++.+-+++||+|.
T Consensus 142 ~~~~i~liDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~gi~~iIvvvNK~Dl 209 (478)
T PLN03126 142 ENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQ 209 (478)
T ss_pred CCcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEecccc
Confidence 46688999999621111223445557899999998877666777788888888888866688999984
No 204
>PLN00043 elongation factor 1-alpha; Provisional
Probab=97.38 E-value=0.00091 Score=56.52 Aligned_cols=68 Identities=15% Similarity=0.050 Sum_probs=50.1
Q ss_pred CCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCchhhH-------HHHHHHHHHhhhCCCCeeEEEEccccC
Q 028600 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVAL-------IDARKGITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~~~~-------~~~~~~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
.++-+.|+|+|+--.-.......+..+|.+|+|+++....+ ..+.+.+..+...+++.+-+++|+.|.
T Consensus 83 ~~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi~~iIV~vNKmD~ 157 (447)
T PLN00043 83 TKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDA 157 (447)
T ss_pred CCEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCCCcEEEEEEcccC
Confidence 57889999999632211233455567999999999987433 467777778888899877788999984
No 205
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=97.37 E-value=0.002 Score=45.44 Aligned_cols=66 Identities=17% Similarity=0.103 Sum_probs=42.9
Q ss_pred CCCEEEEcCCCCCCcc-------hhhhhhhhcCceEEEeeCCchhhHHHHHHHHHHhhhCCCCeeEEEEccccC
Q 028600 139 NLDILVIDMPPGTGDA-------QLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 139 ~~D~IiiD~~~~~~~~-------~~~~~~~~~~d~vi~v~~~~~~~~~~~~~~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
.++++++|+|+..... .........+|.+++++++...........+......+.+. -+++|+.|.
T Consensus 44 ~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~il~v~~~~~~~~~~~~~~~~~~~~~~~~~-ivv~nK~D~ 116 (163)
T cd00880 44 LGPVVLIDTPGIDEAGGLGREREELARRVLERADLILFVVDADLRADEEEEKLLELLRERGKPV-LLVLNKIDL 116 (163)
T ss_pred CCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCeE-EEEEEcccc
Confidence 6789999999632211 11223445788988888888765444444556666667776 488898874
No 206
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=97.35 E-value=0.0006 Score=52.31 Aligned_cols=41 Identities=20% Similarity=0.142 Sum_probs=35.2
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~ 73 (207)
+..+.+ .+.+|+|||+++.+++...++ .|.+|++++++...
T Consensus 20 G~~~~i-~G~~G~GKT~l~~~~~~~~~~-~g~~~~~is~e~~~ 60 (229)
T TIGR03881 20 GFFVAV-TGEPGTGKTIFCLHFAYKGLR-DGDPVIYVTTEESR 60 (229)
T ss_pred CeEEEE-ECCCCCChHHHHHHHHHHHHh-cCCeEEEEEccCCH
Confidence 667777 579999999999999998888 89999999986543
No 207
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.34 E-value=0.00062 Score=57.48 Aligned_cols=37 Identities=30% Similarity=0.419 Sum_probs=32.9
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCC
Q 028600 34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (207)
Q Consensus 34 I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~ 71 (207)
+.+.++.+|+||||++..+|..+++ .|.+|++++...
T Consensus 82 ~~lI~G~pG~GKTtL~lq~a~~~a~-~g~~vlYvs~Ee 118 (446)
T PRK11823 82 VVLIGGDPGIGKSTLLLQVAARLAA-AGGKVLYVSGEE 118 (446)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHh-cCCeEEEEEccc
Confidence 4455789999999999999999998 899999999864
No 208
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=97.33 E-value=0.0027 Score=51.07 Aligned_cols=40 Identities=15% Similarity=0.159 Sum_probs=34.0
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~ 72 (207)
++++-+++. .++||||++.++...+.+ .|..+++||....
T Consensus 53 G~ivEi~G~-~ssGKttLaL~~ia~~q~-~g~~~a~ID~e~~ 92 (322)
T PF00154_consen 53 GRIVEIYGP-ESSGKTTLALHAIAEAQK-QGGICAFIDAEHA 92 (322)
T ss_dssp TSEEEEEES-TTSSHHHHHHHHHHHHHH-TT-EEEEEESSS-
T ss_pred CceEEEeCC-CCCchhhhHHHHHHhhhc-ccceeEEecCccc
Confidence 789999876 588999999999999888 8999999999653
No 209
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=97.32 E-value=0.0078 Score=49.12 Aligned_cols=123 Identities=11% Similarity=0.124 Sum_probs=65.7
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccccCCccccccccceecccccceeecccccCCC
Q 028600 34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGFLVPS 113 (207)
Q Consensus 34 I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (207)
|.+.++-=|+||||+.-++... . .|+|+++|-.|+...++...+-.. .... ......+.-+..|.+==
T Consensus 6 v~iltGFLGaGKTTll~~ll~~--~-~~~~iavi~Ne~G~~~ID~~ll~~--~~~~------~~~~~~v~el~nGCiCC- 73 (341)
T TIGR02475 6 VTIVTGFLGAGKTTLIRHLLQN--A-AGRRIAVIVNEFGDLGIDGEILKA--CGIE------GCSEENIVELANGCICC- 73 (341)
T ss_pred EEEEEECCCCCHHHHHHHHHhc--c-CCCcEEEEECCCccccchHHHHhc--cccc------cCCcceEEEeCCCCccc-
Confidence 4555678899999999999863 4 689999998887654433221110 0000 00001122222221000
Q ss_pred CCcccccchhhHHHHHHHHHhcccCCCCEEEEcCCCCCCcchhhhh-------hhhcCceEEEeeCCch
Q 028600 114 SSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTT-------QTLQLSGALIVSTPQD 175 (207)
Q Consensus 114 ~~~~~~~~~~~~~~l~~~~~~l~~~~~D~IiiD~~~~~~~~~~~~~-------~~~~~d~vi~v~~~~~ 175 (207)
.. .......+.+++.. + ..+|+|||.+++......+... .....|.+|.|+++..
T Consensus 74 ----s~-~~dl~~~l~~l~~~-~-~~~d~IvIEtsG~a~P~~i~~~~~~~~l~~~~~l~~vvtvVDa~~ 135 (341)
T TIGR02475 74 ----TV-ADDFIPTMTKLLAR-R-QRPDHILIETSGLALPKPLVQAFQWPEIRSRVTVDGVVTVVDGPA 135 (341)
T ss_pred ----cC-cHHHHHHHHHHHhc-c-CCCCEEEEeCCCCCCHHHHHHHhcCccccceEEeeeEEEEEECch
Confidence 00 11223444444431 2 5799999999975543333111 1124678999999864
No 210
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=97.32 E-value=0.0004 Score=51.33 Aligned_cols=38 Identities=26% Similarity=0.364 Sum_probs=33.6
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCC
Q 028600 34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (207)
Q Consensus 34 I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~ 73 (207)
|+| ++..|+||||+|..|+..+.. .|.++.+|.+|-..
T Consensus 2 i~i-~G~sgsGKttla~~l~~~l~~-~~~~~~~i~~Ddf~ 39 (179)
T cd02028 2 VGI-AGPSGSGKTTFAKKLSNQLRV-NGIGPVVISLDDYY 39 (179)
T ss_pred EEE-ECCCCCCHHHHHHHHHHHHHH-cCCCEEEEehhhcc
Confidence 566 688999999999999999998 89999999988644
No 211
>PRK05595 replicative DNA helicase; Provisional
Probab=97.30 E-value=0.00022 Score=60.22 Aligned_cols=41 Identities=20% Similarity=0.248 Sum_probs=34.4
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCC
Q 028600 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (207)
Q Consensus 33 ~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~ 73 (207)
-+.+.++.+|.|||+++.++|..+|...|++|+++.+....
T Consensus 202 ~liviaarpg~GKT~~al~ia~~~a~~~g~~vl~fSlEms~ 242 (444)
T PRK05595 202 DMILIAARPSMGKTTFALNIAEYAALREGKSVAIFSLEMSK 242 (444)
T ss_pred cEEEEEecCCCChHHHHHHHHHHHHHHcCCcEEEEecCCCH
Confidence 45555899999999999999998774379999999888644
No 212
>PRK15453 phosphoribulokinase; Provisional
Probab=97.29 E-value=0.00064 Score=53.53 Aligned_cols=44 Identities=18% Similarity=0.379 Sum_probs=38.1
Q ss_pred CCCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCC
Q 028600 29 GVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGP 74 (207)
Q Consensus 29 ~~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~ 74 (207)
+...+|+|+ +..|+||||++..|+..+.. .|.++++++.|....
T Consensus 3 ~k~piI~It-G~SGsGKTTva~~l~~if~~-~~~~~~vi~~D~yh~ 46 (290)
T PRK15453 3 AKHPIIAVT-GSSGAGTTTVKRAFEKIFRR-ENINAAVVEGDSFHR 46 (290)
T ss_pred CCCcEEEEE-CCCCCCHHHHHHHHHHHHhh-cCCCeEEEecccccc
Confidence 346789994 88899999999999999988 888999999998664
No 213
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.26 E-value=0.001 Score=54.82 Aligned_cols=38 Identities=29% Similarity=0.359 Sum_probs=33.1
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCC
Q 028600 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (207)
Q Consensus 33 ~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~ 71 (207)
.+.+.++.+|+||||++..+|..+++ .|.+|++++...
T Consensus 83 slvLI~G~pG~GKStLllq~a~~~a~-~g~~VlYvs~EE 120 (372)
T cd01121 83 SVILIGGDPGIGKSTLLLQVAARLAK-RGGKVLYVSGEE 120 (372)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHh-cCCeEEEEECCc
Confidence 34455789999999999999999999 899999998764
No 214
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=97.25 E-value=0.0027 Score=50.34 Aligned_cols=95 Identities=12% Similarity=0.119 Sum_probs=57.1
Q ss_pred CCCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccccCCccccccccceecccccceeeccc
Q 028600 29 GVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMG 108 (207)
Q Consensus 29 ~~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (207)
....++.++ +..|+||||+...|...+.. . +++.+|+-|..... . .. .+ ..... ....+..|
T Consensus 102 ~~~~~v~l~-G~pGsGKTTLl~~l~~~l~~-~-~~~~VI~gD~~t~~-D----a~---rI------~~~g~-pvvqi~tG 163 (290)
T PRK10463 102 RKQLVLNLV-SSPGSGKTTLLTETLMRLKD-S-VPCAVIEGDQQTVN-D----AA---RI------RATGT-PAIQVNTG 163 (290)
T ss_pred cCCeEEEEE-CCCCCCHHHHHHHHHHHhcc-C-CCEEEECCCcCcHH-H----HH---HH------HhcCC-cEEEecCC
Confidence 336788886 66999999999999998876 3 58999988864421 1 00 01 00000 11111111
Q ss_pred ccCCCCCcccccchhhHHHHHHHHHhcccCCCCEEEEcCCCCC
Q 028600 109 FLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGT 151 (207)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~D~IiiD~~~~~ 151 (207)
. .+ -.....+.+.+..|.....|++||++.+.+
T Consensus 164 ~--------~C--hl~a~mv~~Al~~L~~~~~d~liIEnvGnL 196 (290)
T PRK10463 164 K--------GC--HLDAQMIADAAPRLPLDDNGILFIENVGNL 196 (290)
T ss_pred C--------CC--cCcHHHHHHHHHHHhhcCCcEEEEECCCCc
Confidence 1 00 022455666666665467899999998754
No 215
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.25 E-value=0.0014 Score=50.11 Aligned_cols=40 Identities=25% Similarity=0.243 Sum_probs=34.4
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCC------CeEEEEecCCC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQ------LKVGLLDADVY 72 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g------~~VlliD~d~~ 72 (207)
++++.+ .+.+|+|||+++.++|...+. .| .+|++||.+-.
T Consensus 19 g~v~~I-~G~~GsGKT~l~~~ia~~~~~-~~~~~g~~~~v~yi~~e~~ 64 (226)
T cd01393 19 GRITEI-FGEFGSGKTQLCLQLAVEAQL-PGELGGLEGKVVYIDTEGA 64 (226)
T ss_pred CcEEEE-eCCCCCChhHHHHHHHHHhhc-ccccCCCcceEEEEecCCC
Confidence 667777 579999999999999999888 77 99999998753
No 216
>TIGR00682 lpxK tetraacyldisaccharide 4'-kinase. Also called lipid-A 4'-kinase. This essential gene encodes an enzyme in the pathway of lipid A biosynthesis in Gram-negative organisms. A single copy of this protein is found in Gram-negative bacteria. PSI-BLAST converges on this set of apparent orthologs without identifying any other homologs.
Probab=97.24 E-value=0.0053 Score=49.35 Aligned_cols=42 Identities=33% Similarity=0.400 Sum_probs=37.2
Q ss_pred CeEEEEEeCC-CCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCC
Q 028600 31 KDVIAVASGK-GGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (207)
Q Consensus 31 ~k~I~v~s~k-gG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~ 73 (207)
-++|+|-+.. ||+|||.++..||..|.+ +|++|.+|-=...+
T Consensus 28 vPVIsVGNitvGGTGKTP~v~~La~~l~~-~G~~~~IlSRGYg~ 70 (311)
T TIGR00682 28 VPVVIVGNLSVGGTGKTPVVVWLAELLKD-RGLRVGVLSRGYGS 70 (311)
T ss_pred CCEEEEeccccCCcChHHHHHHHHHHHHH-CCCEEEEECCCCCC
Confidence 5799998887 999999999999999999 99999999765543
No 217
>PF07755 DUF1611: Protein of unknown function (DUF1611); InterPro: IPR011669 This entry contains a number of hypothetical bacterial and archaeal proteins. The region is approximately 350 residues long. A member of this family (Q6M063 from SWISSPROT) is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.; PDB: 2G0T_A 2OBN_A.
Probab=97.24 E-value=0.0065 Score=48.37 Aligned_cols=139 Identities=14% Similarity=0.187 Sum_probs=83.0
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccccCCccccccccceecccccceeecccc
Q 028600 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGF 109 (207)
Q Consensus 30 ~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (207)
..++|.+.++---+||=|++..|..++.+ +|.++.++-....+-.. .-.|.. ++.++
T Consensus 111 ~~~rv~~vGTDcavGK~tTal~L~~~l~~-~G~~a~fvaTGQTGimi-a~~Gv~------------------iDav~--- 167 (301)
T PF07755_consen 111 KAKRVLTVGTDCAVGKMTTALELRRALRE-RGINAGFVATGQTGIMI-AGYGVP------------------IDAVP--- 167 (301)
T ss_dssp SSEEEEEEESSSSSSHHHHHHHHHHHHHH-TT--EEEEE-SHHHHHC-HSEC--------------------GGGSB---
T ss_pred CCCEEEEEccCccccHHHHHHHHHHHHHH-cCCCceEEecCCceEEE-ecCCee------------------ccchh---
Confidence 48899999999999999999999999999 99999999776544111 111110 00011
Q ss_pred cCCCCCcccccchhhHHHHHHHHHhcccCCCCEEEEcCCCCCCcch---hhhhhhh--cCceEEEeeCCchh--------
Q 028600 110 LVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQ---LTTTQTL--QLSGALIVSTPQDV-------- 176 (207)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~D~IiiD~~~~~~~~~---~~~~~~~--~~d~vi~v~~~~~~-------- 176 (207)
.....-.++.++.+.. ++.|+|||.+.+++.... .++..+. .-|.+|+.-.|++.
T Consensus 168 -----------~DFvaGavE~~v~~~~-~~~d~ivVEGQgsL~hPay~gvsl~lL~Gs~Pd~lVL~H~p~r~~~~~~p~~ 235 (301)
T PF07755_consen 168 -----------SDFVAGAVEALVPEAA-EEHDWIVVEGQGSLSHPAYSGVSLGLLHGSQPDALVLCHAPGRKHRDGFPHY 235 (301)
T ss_dssp -----------GGGHHHHHHHHHHHHC-CC-SEEEEE--S-TTSTTTHHCHHHHHHHH--SEEEEEEETT-SC-TTSTTS
T ss_pred -----------hhhHHHHHHHHHHhhC-cCCCEEEEeccccccCccccccchhhhccCCCCeEEEEecCCcccccCCCcC
Confidence 1234566777777776 466999999998765432 1233332 46899999988554
Q ss_pred hHHHHHHHHHHhhhCC-----CCeeEEEEccc
Q 028600 177 ALIDARKGITMFSKVQ-----VPVCSFLAQII 203 (207)
Q Consensus 177 ~~~~~~~~l~~l~~~~-----~~~~g~v~N~~ 203 (207)
.+..+.+.++.++... .+++|+-+|-.
T Consensus 236 ~ip~l~~~I~l~e~la~~~~~~~VvgIslNt~ 267 (301)
T PF07755_consen 236 PIPPLEEEIELIEALAGTKPPAKVVGISLNTS 267 (301)
T ss_dssp C---HHHHHHHHHHCCCGC---EEEEEECC-T
T ss_pred CCCCHHHHHHHHHHhhccCCCccEEEEEEECC
Confidence 2344555555555443 33889998854
No 218
>PRK14491 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA; Provisional
Probab=97.23 E-value=0.0018 Score=56.64 Aligned_cols=40 Identities=18% Similarity=0.261 Sum_probs=35.7
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCC
Q 028600 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (207)
Q Consensus 30 ~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~ 71 (207)
++++|+|++ ..|+||||+...|...|.+ +|.||.+|..+.
T Consensus 9 ~~~vi~ivG-~s~sGKTTlie~li~~L~~-~G~rVavIKh~~ 48 (597)
T PRK14491 9 SIPLLGFCA-YSGTGKTTLLEQLIPELNQ-RGLRLAVIKHAH 48 (597)
T ss_pred CccEEEEEc-CCCCCHHHHHHHHHHHHHh-CCceEEEEEcCC
Confidence 378999975 5899999999999999999 999999998754
No 219
>PRK04328 hypothetical protein; Provisional
Probab=97.23 E-value=0.0013 Score=51.27 Aligned_cols=41 Identities=17% Similarity=0.101 Sum_probs=35.1
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~ 73 (207)
+.++.+ .+.+|+|||+++.++++..++ .|.++++|+++-..
T Consensus 23 gs~ili-~G~pGsGKT~l~~~fl~~~~~-~ge~~lyis~ee~~ 63 (249)
T PRK04328 23 RNVVLL-SGGPGTGKSIFSQQFLWNGLQ-MGEPGVYVALEEHP 63 (249)
T ss_pred CcEEEE-EcCCCCCHHHHHHHHHHHHHh-cCCcEEEEEeeCCH
Confidence 566666 578889999999999999888 89999999997644
No 220
>PRK00652 lpxK tetraacyldisaccharide 4'-kinase; Reviewed
Probab=97.21 E-value=0.0061 Score=49.32 Aligned_cols=42 Identities=33% Similarity=0.432 Sum_probs=36.2
Q ss_pred CeEEEEEeC-CCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCC
Q 028600 31 KDVIAVASG-KGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (207)
Q Consensus 31 ~k~I~v~s~-kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~ 73 (207)
.++|+|-+. .||+|||+++..||..+.+ +|.+|.+|-=...+
T Consensus 49 ~pvIsVGNi~vGGtGKTP~v~~L~~~l~~-~g~~~~ilsRGYg~ 91 (325)
T PRK00652 49 VPVIVVGNITVGGTGKTPVVIALAEQLQA-RGLKPGVVSRGYGG 91 (325)
T ss_pred CCEEEEcCeeCCCCChHHHHHHHHHHHHH-CCCeEEEECCCCCC
Confidence 458888665 6999999999999999999 99999999766543
No 221
>PRK07952 DNA replication protein DnaC; Validated
Probab=97.20 E-value=0.0007 Score=52.51 Aligned_cols=34 Identities=26% Similarity=0.277 Sum_probs=30.7
Q ss_pred EEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEec
Q 028600 35 AVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDA 69 (207)
Q Consensus 35 ~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~ 69 (207)
.+..+++|+|||+++.++|..+.+ .|++|+++++
T Consensus 102 ~~l~G~~GtGKThLa~aia~~l~~-~g~~v~~it~ 135 (244)
T PRK07952 102 FIFSGKPGTGKNHLAAAICNELLL-RGKSVLIITV 135 (244)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHh-cCCeEEEEEH
Confidence 455799999999999999999999 9999999965
No 222
>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]
Probab=97.19 E-value=0.002 Score=45.75 Aligned_cols=56 Identities=27% Similarity=0.214 Sum_probs=47.3
Q ss_pred CCCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccccCCc
Q 028600 29 GVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKP 86 (207)
Q Consensus 29 ~~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~~~~ 86 (207)
..+-+|=++ +-.|+||||+|..|..+|-+ +|+-...+|-|--...+..-++...++
T Consensus 29 qkGcviWiT-GLSgSGKStlACaL~q~L~q-rgkl~Y~LDGDNvRhGLN~DL~F~a~d 84 (207)
T KOG0635|consen 29 QKGCVIWIT-GLSGSGKSTLACALSQALLQ-RGKLTYILDGDNVRHGLNKDLGFKAED 84 (207)
T ss_pred CCCcEEEEe-ccCCCCchhHHHHHHHHHHh-cCceEEEecCcccccccccccCcchhh
Confidence 347788886 66788999999999999999 999999999998877877777766544
No 223
>PRK07560 elongation factor EF-2; Reviewed
Probab=97.19 E-value=0.0012 Score=59.36 Aligned_cols=67 Identities=13% Similarity=0.117 Sum_probs=49.3
Q ss_pred CCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCchhhHHHHHHHHHHhhhCCCCeeEEEEccccC
Q 028600 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~~~~~~~~~~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
++|-+.++|||+-..-......++..+|.+++|+++...-...+...+....+.+.+. -+++||+|.
T Consensus 85 ~~~~i~liDtPG~~df~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~~~~~~-iv~iNK~D~ 151 (731)
T PRK07560 85 KEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALRERVKP-VLFINKVDR 151 (731)
T ss_pred CcEEEEEEcCCCccChHHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHHHcCCCe-EEEEECchh
Confidence 4677899999964332233455667899999999987765566777777767777787 488999985
No 224
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=97.19 E-value=0.001 Score=56.91 Aligned_cols=42 Identities=17% Similarity=0.195 Sum_probs=35.8
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCC
Q 028600 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPS 75 (207)
Q Consensus 33 ~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~ 75 (207)
.+.+.++.+|+||||++.++++..++ .|.+|+++-.+-....
T Consensus 264 s~~li~G~~G~GKt~l~~~f~~~~~~-~ge~~~y~s~eEs~~~ 305 (484)
T TIGR02655 264 SIILATGATGTGKTLLVSKFLENACA-NKERAILFAYEESRAQ 305 (484)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHH-CCCeEEEEEeeCCHHH
Confidence 44555899999999999999999999 9999999988865433
No 225
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=97.18 E-value=0.0023 Score=53.83 Aligned_cols=68 Identities=12% Similarity=0.134 Sum_probs=44.5
Q ss_pred CCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCch--hhHHHHHHHHHHhhhCCCCeeEEEEccccC
Q 028600 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD--VALIDARKGITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~--~~~~~~~~~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
+++.+.++|+|+--.........+..+|.+++|++... .-.....+.+..+...+.+.+-+++||.|.
T Consensus 82 ~~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~~~~iivviNK~Dl 151 (425)
T PRK12317 82 DKYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLGINQLIVAINKMDA 151 (425)
T ss_pred CCeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcCCCeEEEEEEcccc
Confidence 67889999999632111122344457899999998875 333444555555666676655689999984
No 226
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=97.17 E-value=0.011 Score=44.24 Aligned_cols=37 Identities=32% Similarity=0.501 Sum_probs=29.5
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCC
Q 028600 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (207)
Q Consensus 33 ~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~ 73 (207)
+|++ ++..|+||||++..|+..+ .+.++.++.+|...
T Consensus 1 iigi-~G~~GsGKSTl~~~l~~~l---~~~~~~v~~~D~~~ 37 (198)
T cd02023 1 IIGI-AGGSGSGKTTVAEEIIEQL---GNPKVVIISQDSYY 37 (198)
T ss_pred CEEE-ECCCCCCHHHHHHHHHHHh---CCCCeEEEEecccc
Confidence 3566 5779999999999999988 35688999888644
No 227
>PF13479 AAA_24: AAA domain
Probab=97.16 E-value=0.0026 Score=48.37 Aligned_cols=31 Identities=32% Similarity=0.366 Sum_probs=25.0
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCC
Q 028600 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (207)
Q Consensus 33 ~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~ 73 (207)
.+.+ .+.+|+||||++..+ -++++||+|...
T Consensus 5 ~~lI-yG~~G~GKTt~a~~~---------~k~l~id~E~g~ 35 (213)
T PF13479_consen 5 KILI-YGPPGSGKTTLAASL---------PKPLFIDTENGS 35 (213)
T ss_pred EEEE-ECCCCCCHHHHHHhC---------CCeEEEEeCCCc
Confidence 4445 699999999988777 489999999754
No 228
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=97.16 E-value=0.00088 Score=52.51 Aligned_cols=39 Identities=28% Similarity=0.290 Sum_probs=34.4
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~ 71 (207)
+.++.| ++.+|+|||+++.++|...++ .|.+|++++++.
T Consensus 36 gs~~lI-~G~pGtGKT~l~~qf~~~~a~-~Ge~vlyis~Ee 74 (259)
T TIGR03878 36 YSVINI-TGVSDTGKSLMVEQFAVTQAS-RGNPVLFVTVES 74 (259)
T ss_pred CcEEEE-EcCCCCCHHHHHHHHHHHHHh-CCCcEEEEEecC
Confidence 445555 799999999999999999999 899999999984
No 229
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=97.16 E-value=0.0014 Score=55.53 Aligned_cols=39 Identities=33% Similarity=0.482 Sum_probs=33.7
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~ 71 (207)
+.++ +.++.+|+||||++..+|..+++ .|.+|++++.+.
T Consensus 94 Gsvi-lI~G~pGsGKTTL~lq~a~~~a~-~g~kvlYvs~EE 132 (454)
T TIGR00416 94 GSLI-LIGGDPGIGKSTLLLQVACQLAK-NQMKVLYVSGEE 132 (454)
T ss_pred CeEE-EEEcCCCCCHHHHHHHHHHHHHh-cCCcEEEEECcC
Confidence 4444 45899999999999999999999 899999998874
No 230
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=97.14 E-value=0.0029 Score=52.15 Aligned_cols=41 Identities=24% Similarity=0.382 Sum_probs=36.5
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCC
Q 028600 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (207)
Q Consensus 30 ~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~ 72 (207)
++++|.|+ +..|+||||+...|...|.+ .|.+|.+|--|..
T Consensus 204 ~~~~~~~~-g~~~~GKtt~~~~l~~~l~~-~g~~v~~iKh~~h 244 (366)
T PRK14489 204 APPLLGVV-GYSGTGKTTLLEKLIPELIA-RGYRIGLIKHSHH 244 (366)
T ss_pred CccEEEEe-cCCCCCHHHHHHHHHHHHHH-cCCEEEEEEECCc
Confidence 47899996 57899999999999999999 9999999987653
No 231
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=97.12 E-value=0.0032 Score=52.90 Aligned_cols=67 Identities=16% Similarity=0.151 Sum_probs=43.5
Q ss_pred CCCCEEEEcCCCCCCcc--------hhhhhhhhcCceEEEeeCCchhhHHHHHHHHHHhhhCCCCeeEEEEccccC
Q 028600 138 GNLDILVIDMPPGTGDA--------QLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~--------~~~~~~~~~~d~vi~v~~~~~~~~~~~~~~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
.+..+.|+|||+..... ......+..+|.+++|+++...-......+.+.+++.+.++ -+|+|+.|.
T Consensus 45 ~~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~~~~pi-ilVvNK~D~ 119 (429)
T TIGR03594 45 GGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEADVILFVVDGREGLTPEDEEIAKWLRKSGKPV-ILVANKIDG 119 (429)
T ss_pred CCeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCCE-EEEEECccC
Confidence 34467889998531110 12234556789999999987643333455667777777776 489999884
No 232
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=97.12 E-value=0.00061 Score=52.17 Aligned_cols=41 Identities=24% Similarity=0.197 Sum_probs=33.2
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhC-CCeEEEEecCCCC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKC-QLKVGLLDADVYG 73 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~-g~~VlliD~d~~~ 73 (207)
+.++.+ .+.+|+|||+++.++++..++ + |.+|++|.++...
T Consensus 19 gs~~li-~G~~GsGKT~l~~q~l~~~~~-~~ge~vlyvs~ee~~ 60 (226)
T PF06745_consen 19 GSVVLI-SGPPGSGKTTLALQFLYNGLK-NFGEKVLYVSFEEPP 60 (226)
T ss_dssp TSEEEE-EESTTSSHHHHHHHHHHHHHH-HHT--EEEEESSS-H
T ss_pred CcEEEE-EeCCCCCcHHHHHHHHHHhhh-hcCCcEEEEEecCCH
Confidence 556666 688999999999999999999 8 9999999988654
No 233
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=97.12 E-value=0.0064 Score=46.64 Aligned_cols=64 Identities=6% Similarity=-0.022 Sum_probs=36.6
Q ss_pred CCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCchhhHHHHHHHHHHhhhCCCCeeEEEEccccC
Q 028600 139 NLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 139 ~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~~~~~~~~~~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
...++++|||+.+ ...+..+..+|.+++++++...-.....+++..+...+.+.+-+|+|+.|.
T Consensus 82 ~~~i~~vDtPg~~---~~~l~~ak~aDvVllviDa~~~~~~~~~~i~~~l~~~g~p~vi~VvnK~D~ 145 (225)
T cd01882 82 KRRLTFIECPNDI---NAMIDIAKVADLVLLLIDASFGFEMETFEFLNILQVHGFPRVMGVLTHLDL 145 (225)
T ss_pred CceEEEEeCCchH---HHHHHHHHhcCEEEEEEecCcCCCHHHHHHHHHHHHcCCCeEEEEEecccc
Confidence 3445677777433 122344456777777777654333344456666666666644457777763
No 234
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=97.12 E-value=0.0018 Score=50.72 Aligned_cols=45 Identities=18% Similarity=0.166 Sum_probs=39.1
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCcc
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVP 77 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~ 77 (207)
++++.| .+.+|+|||+++.+++...++ .|.+|++|.++.....+.
T Consensus 23 g~~~lI-~G~pGsGKT~f~~qfl~~~~~-~ge~vlyvs~~e~~~~l~ 67 (260)
T COG0467 23 GSVVLI-TGPPGTGKTIFALQFLYEGAR-EGEPVLYVSTEESPEELL 67 (260)
T ss_pred CcEEEE-EcCCCCcHHHHHHHHHHHHHh-cCCcEEEEEecCCHHHHH
Confidence 667777 699999999999999999999 899999999998665443
No 235
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=97.11 E-value=0.018 Score=44.23 Aligned_cols=40 Identities=25% Similarity=0.288 Sum_probs=32.4
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEE-EecCC
Q 028600 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGL-LDADV 71 (207)
Q Consensus 30 ~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~Vll-iD~d~ 71 (207)
.+.+|++ ++..|+||||++..|+..+.. .+..+.+ +.+|.
T Consensus 32 ~~~iigi-~G~~GsGKTTl~~~L~~~l~~-~~g~~~v~i~~D~ 72 (229)
T PRK09270 32 RRTIVGI-AGPPGAGKSTLAEFLEALLQQ-DGELPAIQVPMDG 72 (229)
T ss_pred CCEEEEE-ECCCCCCHHHHHHHHHHHhhh-ccCCceEEEeccc
Confidence 3667777 599999999999999999998 6666655 76664
No 236
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=97.10 E-value=0.0086 Score=47.31 Aligned_cols=39 Identities=21% Similarity=0.281 Sum_probs=34.8
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~ 71 (207)
++++-|+ +..|+||||+|.+++....+ .|.++++||+.-
T Consensus 60 g~ItEiy-G~~gsGKT~lal~~~~~aq~-~g~~a~fIDtE~ 98 (279)
T COG0468 60 GRITEIY-GPESSGKTTLALQLVANAQK-PGGKAAFIDTEH 98 (279)
T ss_pred ceEEEEe-cCCCcchhhHHHHHHHHhhc-CCCeEEEEeCCC
Confidence 6777775 77899999999999999999 999999999875
No 237
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=97.10 E-value=0.012 Score=44.41 Aligned_cols=39 Identities=28% Similarity=0.474 Sum_probs=29.5
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCC
Q 028600 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (207)
Q Consensus 30 ~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~ 72 (207)
.+.+|++ .+..|+||||++..|+..+.. ..+.++..|..
T Consensus 5 ~g~vi~I-~G~sGsGKSTl~~~l~~~l~~---~~~~~i~~D~~ 43 (207)
T TIGR00235 5 KGIIIGI-GGGSGSGKTTVARKIYEQLGK---LEIVIISQDNY 43 (207)
T ss_pred CeEEEEE-ECCCCCCHHHHHHHHHHHhcc---cCCeEeccccc
Confidence 4778888 588999999999999987653 35666666553
No 238
>PRK03003 GTP-binding protein Der; Reviewed
Probab=97.07 E-value=0.0047 Score=52.69 Aligned_cols=67 Identities=15% Similarity=0.097 Sum_probs=43.0
Q ss_pred CCCCEEEEcCCCCCCcc--------hhhhhhhhcCceEEEeeCCchhhHHHHHHHHHHhhhCCCCeeEEEEccccC
Q 028600 138 GNLDILVIDMPPGTGDA--------QLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~--------~~~~~~~~~~d~vi~v~~~~~~~~~~~~~~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
.+..+.|+|+|+..... ......+..+|.+++|++........-....+.+.+.+.++ -+|+||.|.
T Consensus 84 ~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~~~~pi-ilV~NK~Dl 158 (472)
T PRK03003 84 NGRRFTVVDTGGWEPDAKGLQASVAEQAEVAMRTADAVLFVVDATVGATATDEAVARVLRRSGKPV-ILAANKVDD 158 (472)
T ss_pred CCcEEEEEeCCCcCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCE-EEEEECccC
Confidence 44567889998632110 11223455799999999987543233345667777777776 489999984
No 239
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=97.07 E-value=0.0014 Score=59.64 Aligned_cols=68 Identities=13% Similarity=0.064 Sum_probs=51.7
Q ss_pred CCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCchhhHHHHHHHHHHhhhCCCCeeEEEEccccCC
Q 028600 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPVCSFLAQIISSM 206 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~~~~~~~~~~l~~l~~~~~~~~g~v~N~~~~~ 206 (207)
..|-+-+||||+-.+-..-...++..+|.+|+|+++...-...+...+.++.+.+.++ -+++||+|+.
T Consensus 96 ~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~~~~p~-i~~iNK~D~~ 163 (843)
T PLN00116 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRP-VLTVNKMDRC 163 (843)
T ss_pred CceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHHHCCCCE-EEEEECCccc
Confidence 3566679999964332233455667899999999988766677788889888888888 4899999864
No 240
>PRK05433 GTP-binding protein LepA; Provisional
Probab=97.07 E-value=0.0043 Score=54.38 Aligned_cols=67 Identities=12% Similarity=0.062 Sum_probs=43.6
Q ss_pred CCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCchhhHHHHHHHHHHhhhCCCCeeEEEEccccC
Q 028600 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~~~~~~~~~~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
+.|.+.|+|||+-.+........+..+|.+++|+++...-.......+..+.+.+.++ -+++|+.|.
T Consensus 72 ~~~~lnLiDTPGh~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~~~lpi-IvViNKiDl 138 (600)
T PRK05433 72 ETYILNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALENDLEI-IPVLNKIDL 138 (600)
T ss_pred CcEEEEEEECCCcHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCE-EEEEECCCC
Confidence 4688999999964332222234566799999999987642233334444445567775 588999984
No 241
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=97.06 E-value=0.036 Score=44.86 Aligned_cols=140 Identities=15% Similarity=0.109 Sum_probs=76.9
Q ss_pred EEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccccCCccccccccceecccccceeecccccCCCC
Q 028600 35 AVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGFLVPSS 114 (207)
Q Consensus 35 ~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (207)
.+.++==|+||||+--+|-. +..|+|+++|=-++..-++.. +.........+.-++.|.
T Consensus 4 tvitGFLGsGKTTlL~~lL~---~~~g~kiAVIVNEfGEvgID~-------------~~~l~~~~e~~~El~nGC----- 62 (323)
T COG0523 4 TVITGFLGSGKTTLLNHLLA---NRDGKKIAVIVNEFGEVGIDG-------------GALLSDTGEEVVELTNGC----- 62 (323)
T ss_pred EEEeecCCCCHHHHHHHHHh---ccCCCcEEEEEecCccccccC-------------CCccccCCccEEEeCCce-----
Confidence 34456668999999888765 435899999977765533321 011111111122222221
Q ss_pred Cccccc--chhhHHHHHHHHHhcccCCCCEEEEcCCCCCCcchh--------hhhhhhcCceEEEeeCCchhhHHHH---
Q 028600 115 SPVVWR--GPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQL--------TTTQTLQLSGALIVSTPQDVALIDA--- 181 (207)
Q Consensus 115 ~~~~~~--~~~~~~~l~~~~~~l~~~~~D~IiiD~~~~~~~~~~--------~~~~~~~~d~vi~v~~~~~~~~~~~--- 181 (207)
.+. ..+....+..+.. .+ ..+|+|||.+.+-..+... .+......|.+|.|+++.......-
T Consensus 63 ---ICCT~r~dl~~~~~~L~~-~~-~~~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~ 137 (323)
T COG0523 63 ---ICCTVRDDLLPALERLLR-RR-DRPDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIA 137 (323)
T ss_pred ---EEEeccchhHHHHHHHHh-cc-CCCCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHH
Confidence 110 1133455666666 55 7799999999964333111 1112224578999999887643222
Q ss_pred HHHHHHhhhCCCCeeEEEEcccc
Q 028600 182 RKGITMFSKVQVPVCSFLAQIIS 204 (207)
Q Consensus 182 ~~~l~~l~~~~~~~~g~v~N~~~ 204 (207)
..+.+|+.-. --+|+||.|
T Consensus 138 ~~~~~Qia~A----D~ivlNK~D 156 (323)
T COG0523 138 ELAEDQLAFA----DVIVLNKTD 156 (323)
T ss_pred HHHHHHHHhC----cEEEEeccc
Confidence 2334444432 247889987
No 242
>PF13245 AAA_19: Part of AAA domain
Probab=97.06 E-value=0.0017 Score=40.90 Aligned_cols=35 Identities=29% Similarity=0.344 Sum_probs=28.9
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHhC----CCeEEEEec
Q 028600 34 IAVASGKGGVGKSTTAVNLAVALASKC----QLKVGLLDA 69 (207)
Q Consensus 34 I~v~s~kgG~GkTt~a~~LA~~la~~~----g~~VlliD~ 69 (207)
+.+..+-+|+|||+++++++..+.. . |++|+++-.
T Consensus 12 ~~vv~g~pGtGKT~~~~~~i~~l~~-~~~~~~~~vlv~a~ 50 (76)
T PF13245_consen 12 LFVVQGPPGTGKTTTLAARIAELLA-ARADPGKRVLVLAP 50 (76)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHH-HhcCCCCeEEEECC
Confidence 3444799999999999999998886 5 899999943
No 243
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.05 E-value=0.0014 Score=52.74 Aligned_cols=39 Identities=21% Similarity=0.295 Sum_probs=34.2
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~ 71 (207)
++++-++ +..|+||||++.+++...++ .|.+|++||+..
T Consensus 55 G~iteI~-G~~GsGKTtLaL~~~~~~~~-~g~~v~yId~E~ 93 (321)
T TIGR02012 55 GRIIEIY-GPESSGKTTLALHAIAEAQK-AGGTAAFIDAEH 93 (321)
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHHHH-cCCcEEEEcccc
Confidence 5677775 56899999999999999999 899999999875
No 244
>CHL00189 infB translation initiation factor 2; Provisional
Probab=97.04 E-value=0.003 Score=56.37 Aligned_cols=67 Identities=15% Similarity=0.193 Sum_probs=47.0
Q ss_pred CCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCchhhHHHHHHHHHHhhhCCCCeeEEEEccccC
Q 028600 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~~~~~~~~~~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
..+.+.++|||+--.........+..+|.+++|++++......+.+.+..+...+.++ -+++|+.|.
T Consensus 293 ~~~kItfiDTPGhe~F~~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I~~~k~~~iPi-IVViNKiDl 359 (742)
T CHL00189 293 ENQKIVFLDTPGHEAFSSMRSRGANVTDIAILIIAADDGVKPQTIEAINYIQAANVPI-IVAINKIDK 359 (742)
T ss_pred CceEEEEEECCcHHHHHHHHHHHHHHCCEEEEEEECcCCCChhhHHHHHHHHhcCceE-EEEEECCCc
Confidence 4578999999963211112223455799999999887655566667777888888886 489999984
No 245
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=97.04 E-value=0.0012 Score=51.64 Aligned_cols=40 Identities=25% Similarity=0.429 Sum_probs=35.5
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCC
Q 028600 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGP 74 (207)
Q Consensus 33 ~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~ 74 (207)
+|+| .+..|+||||++..|+..+.+ .|.++.+|+.|....
T Consensus 1 IIgI-tG~SGSGKTTv~~~l~~~l~~-~g~~v~vI~~D~yyr 40 (277)
T cd02029 1 VIAV-TGSSGAGTTTVKRAFEHIFAR-EGIHPAVVEGDSFHR 40 (277)
T ss_pred CEEE-ECCCCCCHHHHHHHHHHHHHh-cCCceEEEecccccc
Confidence 4777 478899999999999999998 899999999998765
No 246
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=97.03 E-value=0.0037 Score=46.29 Aligned_cols=44 Identities=36% Similarity=0.319 Sum_probs=35.6
Q ss_pred CCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCC
Q 028600 28 DGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (207)
Q Consensus 28 ~~~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~ 73 (207)
...+.+|.+ .+..|+||||++..|+..+.. .|..+.++|.|.-.
T Consensus 15 ~~~~~~i~i-~G~~GsGKstla~~l~~~l~~-~~~~~~~l~~d~~r 58 (184)
T TIGR00455 15 GHRGVVIWL-TGLSGSGKSTIANALEKKLES-KGYRVYVLDGDNVR 58 (184)
T ss_pred CCCCeEEEE-ECCCCCCHHHHHHHHHHHHHH-cCCcEEEECChHHH
Confidence 344677777 577799999999999999988 89889999877533
No 247
>KOG2743 consensus Cobalamin synthesis protein [Coenzyme transport and metabolism]
Probab=97.01 E-value=0.009 Score=47.25 Aligned_cols=120 Identities=13% Similarity=0.228 Sum_probs=64.1
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCC-CCccccccccCCccccccccceecccccceeecccccCC
Q 028600 34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG-PSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGFLVP 112 (207)
Q Consensus 34 I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (207)
+++..+==|+||||+--.+ +-..+|+|+++|--.+.. ..+...+-.+...+ ..+..+...+--|+=|..
T Consensus 59 vtIITGyLGaGKtTLLn~I---l~~~hgKRIAVIlNEfGes~die~sl~~~~~gg----~lyEewv~L~NGClCCtV--- 128 (391)
T KOG2743|consen 59 VTIITGYLGAGKTTLLNYI---LTGQHGKRIAVILNEFGESSDIEKSLAVSQEGG----ELYEEWVELRNGCLCCTV--- 128 (391)
T ss_pred eEEEEecccCChHHHHHHH---HccCCCceEEEEhhhcccchhhhHHHHhccccc----hHHHHHHHhcCCeEEEEe---
Confidence 4444566699999986654 445589999999665543 12211111111110 000011111111111110
Q ss_pred CCCcccccchhhHHHHHHHHHhcccCCCCEEEEcCCCCCCcchhhhhhhh----------cCceEEEeeCCch
Q 028600 113 SSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQTL----------QLSGALIVSTPQD 175 (207)
Q Consensus 113 ~~~~~~~~~~~~~~~l~~~~~~l~~~~~D~IiiD~~~~~~~~~~~~~~~~----------~~d~vi~v~~~~~ 175 (207)
.....+.+.++++ -+ .+||+|++.|.+-.+++.+ +.++ +.|++|-|+++..
T Consensus 129 --------k~~gvraie~lvq-kk-GkfD~IllETTGlAnPaPi--a~~Fw~dd~l~sdVkLDGIVTvvD~K~ 189 (391)
T KOG2743|consen 129 --------KDNGVRAIENLVQ-KK-GKFDHILLETTGLANPAPI--ASMFWLDDELGSDVKLDGIVTVVDAKH 189 (391)
T ss_pred --------cchHHHHHHHHHh-cC-CCcceEEEeccCCCCcHHH--HHHHhhhhhhcCceeeeeEEEEEehhh
Confidence 0122567778877 34 8999999999965553332 2222 4679999998754
No 248
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.00 E-value=0.0011 Score=50.92 Aligned_cols=40 Identities=23% Similarity=0.246 Sum_probs=32.7
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhC------CCeEEEEecCCC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKC------QLKVGLLDADVY 72 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~------g~~VlliD~d~~ 72 (207)
++++.+ .+.+|+|||+++.+++..... . +.+|++||++..
T Consensus 19 g~i~~i-~G~~GsGKT~l~~~l~~~~~~-~~~~~g~~~~viyi~~e~~ 64 (235)
T cd01123 19 GSITEI-FGEFGSGKTQLCHQLAVTVQL-PIELGGLEGKAVYIDTEGT 64 (235)
T ss_pred CeEEEE-ECCCCCCHHHHHHHHHHHeeC-ccccCCCCccEEEEeCCCC
Confidence 667777 688999999999999987655 3 489999999863
No 249
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=96.98 E-value=0.0012 Score=53.70 Aligned_cols=40 Identities=30% Similarity=0.311 Sum_probs=34.4
Q ss_pred EEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCC
Q 028600 35 AVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGP 74 (207)
Q Consensus 35 ~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~ 74 (207)
++..+-.|+||||++..|+..+....|.+|.++|.|-.-+
T Consensus 2 ~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd~i~ 41 (340)
T TIGR03575 2 CVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDDIIP 41 (340)
T ss_pred eEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEccccccc
Confidence 4567899999999999999999843899999999997553
No 250
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.98 E-value=0.0015 Score=51.38 Aligned_cols=40 Identities=23% Similarity=0.339 Sum_probs=33.9
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCC
Q 028600 34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (207)
Q Consensus 34 I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~ 73 (207)
+.+.++.+|+|||+++.++|..++...|.+|+++.++...
T Consensus 32 ~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E~~~ 71 (271)
T cd01122 32 LIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEEPV 71 (271)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEcccCH
Confidence 4445799999999999999999998239999999997643
No 251
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=96.97 E-value=0.0028 Score=50.57 Aligned_cols=106 Identities=20% Similarity=0.245 Sum_probs=59.2
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHh---CC------CeEEEEecCCCCCCccccccccCCccccccccceecccccce
Q 028600 33 VIAVASGKGGVGKSTTAVNLAVALASK---CQ------LKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVK 103 (207)
Q Consensus 33 ~I~v~s~kgG~GkTt~a~~LA~~la~~---~g------~~VlliD~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (207)
+.++..+-||+||||++..|..+++.= .| .+|++|.+....+++-..+..- -..-.+.|....+++
T Consensus 90 ~~~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvslEl~re~~L~Rl~~v-----~a~mgLsPadvrn~d 164 (402)
T COG3598 90 YVSILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSLELYREDILERLEPV-----RARMGLSPADVRNMD 164 (402)
T ss_pred eeEEEecCCcccHhHHHHHHHHHHHhhHHHhcccccCCCeEEEEEeccChHHHHHHHHHH-----HHHcCCChHhhhhee
Confidence 455667999999999999999999851 12 5789998888776654333210 001112222333333
Q ss_pred eecccccCCCCCcccccchhhHHHHHHHHHhcccCCCCEEEEcCCC
Q 028600 104 CMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPP 149 (207)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~D~IiiD~~~ 149 (207)
+-.... ...+...-.+....++...+.+ ..+|+||||.--
T Consensus 165 ltd~~G---aa~~~d~l~pkl~rRfek~~~Q---~rp~~vViDp~v 204 (402)
T COG3598 165 LTDVSG---AADESDVLSPKLYRRFEKILEQ---KRPDFVVIDPFV 204 (402)
T ss_pred cccccc---CCCccccccHHHHHHHHHHHHH---hCCCeEEEcchh
Confidence 311111 0111110011335566666665 679999999864
No 252
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=96.96 E-value=0.0037 Score=47.68 Aligned_cols=34 Identities=29% Similarity=0.356 Sum_probs=25.6
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~ 73 (207)
+..+.| .+++|+||||+|..|+ .++++++.|-..
T Consensus 12 ~~~~li-yG~~G~GKtt~a~~~~--------~~~~~~~~d~~~ 45 (220)
T TIGR01618 12 PNMYLI-YGKPGTGKTSTIKYLP--------GKTLVLSFDMSS 45 (220)
T ss_pred CcEEEE-ECCCCCCHHHHHHhcC--------CCCEEEeccccc
Confidence 344555 6999999999887763 368999998743
No 253
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=96.96 E-value=0.0018 Score=51.07 Aligned_cols=38 Identities=26% Similarity=0.266 Sum_probs=27.8
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCC
Q 028600 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (207)
Q Consensus 32 k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~ 71 (207)
..|.+ .+-+|+||||+|..|+..+.. .+.+|.+|+.|.
T Consensus 2 pLiil-~G~P~SGKTt~a~~L~~~~~~-~~~~v~~i~~~~ 39 (270)
T PF08433_consen 2 PLIIL-CGLPCSGKTTRAKELKKYLEE-KGKEVVIISDDS 39 (270)
T ss_dssp -EEEE-E--TTSSHHHHHHHHHHHHHH-TT--EEEE-THH
T ss_pred EEEEE-EcCCCCcHHHHHHHHHHHHHh-cCCEEEEEcccc
Confidence 34555 589999999999999999999 999999998553
No 254
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=96.94 E-value=0.0018 Score=58.23 Aligned_cols=38 Identities=32% Similarity=0.232 Sum_probs=33.0
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEec
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDA 69 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~ 69 (207)
.+=+++.=+.+|.||||+...|-+.|.. .|++|++.-.
T Consensus 684 aedy~LI~GMPGTGKTTtI~~LIkiL~~-~gkkVLLtsy 721 (1100)
T KOG1805|consen 684 AEDYALILGMPGTGKTTTISLLIKILVA-LGKKVLLTSY 721 (1100)
T ss_pred ccchheeecCCCCCchhhHHHHHHHHHH-cCCeEEEEeh
Confidence 3446677799999999999999999999 9999999843
No 255
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=96.92 E-value=0.0018 Score=50.01 Aligned_cols=42 Identities=24% Similarity=0.343 Sum_probs=35.4
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~ 73 (207)
+.++.+ ++.+|+|||+++.++|..++...|.+|+++.++...
T Consensus 13 G~l~lI-~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~~~ 54 (242)
T cd00984 13 GDLIII-AARPSMGKTAFALNIAENIAKKQGKPVLFFSLEMSK 54 (242)
T ss_pred CeEEEE-EeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCH
Confidence 445555 799999999999999999999339999999988754
No 256
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=96.89 E-value=0.011 Score=44.04 Aligned_cols=32 Identities=31% Similarity=0.354 Sum_probs=28.4
Q ss_pred eCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecC
Q 028600 38 SGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70 (207)
Q Consensus 38 s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d 70 (207)
-+-.|-||||.|..+|...+. .|.+|+++=+=
T Consensus 28 ~~g~GkGKtt~a~g~a~ra~g-~G~~V~ivQFl 59 (191)
T PRK05986 28 HTGNGKGKSTAAFGMALRAVG-HGKKVGVVQFI 59 (191)
T ss_pred ECCCCCChHHHHHHHHHHHHH-CCCeEEEEEEe
Confidence 367788999999999999999 99999999553
No 257
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=96.88 E-value=0.0076 Score=52.85 Aligned_cols=67 Identities=10% Similarity=0.054 Sum_probs=42.4
Q ss_pred CCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCchhhHHHHHHHHHHhhhCCCCeeEEEEccccC
Q 028600 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~~~~~~~~~~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
..|.+.|+|||+...........+..+|.+++|++............+....+.+.++ -+++|+.|.
T Consensus 68 ~~~~l~liDTPG~~dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~~~ipi-IiViNKiDl 134 (595)
T TIGR01393 68 ETYVLNLIDTPGHVDFSYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALENDLEI-IPVINKIDL 134 (595)
T ss_pred CEEEEEEEECCCcHHHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHHcCCCE-EEEEECcCC
Confidence 4578899999964332222344566799999999987632222333333334456775 588999984
No 258
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.87 E-value=0.0049 Score=49.31 Aligned_cols=150 Identities=14% Similarity=0.126 Sum_probs=82.8
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHh---CCCeEEEEecCCCCCCccccccccCCc---cccccccceecccccceee
Q 028600 32 DVIAVASGKGGVGKSTTAVNLAVALASK---CQLKVGLLDADVYGPSVPMMMKIDQKP---EVTKDMKMVPIENYGVKCM 105 (207)
Q Consensus 32 k~I~v~s~kgG~GkTt~a~~LA~~la~~---~g~~VlliD~d~~~~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 105 (207)
|+|-+ -+.+|.|||+++-.||..|+=. +-.+..+|+.+... -++.+|+...+- -+....+.... ..++-++
T Consensus 178 RliLl-hGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshs-LFSKWFsESgKlV~kmF~kI~ELv~d-~~~lVfv 254 (423)
T KOG0744|consen 178 RLILL-HGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHS-LFSKWFSESGKLVAKMFQKIQELVED-RGNLVFV 254 (423)
T ss_pred eEEEE-eCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhH-HHHHHHhhhhhHHHHHHHHHHHHHhC-CCcEEEE
Confidence 45555 6889999999999999998841 24566788777533 566677655420 00011111111 0111111
Q ss_pred cccc---------c-CCCCCcccccchhhHHHHHH---HHHhcccCCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeC
Q 028600 106 SMGF---------L-VPSSSPVVWRGPMVMSALRK---MSREVDWGNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVST 172 (207)
Q Consensus 106 ~~~~---------~-~~~~~~~~~~~~~~~~~l~~---~~~~l~~~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~ 172 (207)
-... . .....+ .+..+.+.. -+..++ ....++|+-|++-.+ .+-.+.+..||.+..|-.
T Consensus 255 LIDEVESLa~aR~s~~S~~Ep-----sDaIRvVNalLTQlDrlK-~~~NvliL~TSNl~~--siD~AfVDRADi~~yVG~ 326 (423)
T KOG0744|consen 255 LIDEVESLAAARTSASSRNEP-----SDAIRVVNALLTQLDRLK-RYPNVLILATSNLTD--SIDVAFVDRADIVFYVGP 326 (423)
T ss_pred EeHHHHHHHHHHHhhhcCCCC-----chHHHHHHHHHHHHHHhc-cCCCEEEEeccchHH--HHHHHhhhHhhheeecCC
Confidence 1000 0 000111 122333333 344566 677777777775333 333555668999999999
Q ss_pred CchhhHHHHHHH-HHHhhhCC
Q 028600 173 PQDVALIDARKG-ITMFSKVQ 192 (207)
Q Consensus 173 ~~~~~~~~~~~~-l~~l~~~~ 192 (207)
|+......+.+. ++.+...|
T Consensus 327 Pt~~ai~~IlkscieEL~~~g 347 (423)
T KOG0744|consen 327 PTAEAIYEILKSCIEELISSG 347 (423)
T ss_pred ccHHHHHHHHHHHHHHHHhcC
Confidence 988877776655 56666653
No 259
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=96.87 E-value=0.0021 Score=51.73 Aligned_cols=41 Identities=22% Similarity=0.199 Sum_probs=31.2
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHH-----hCCCeEEEEecCCC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALAS-----KCQLKVGLLDADVY 72 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~-----~~g~~VlliD~d~~ 72 (207)
++++-+ .+..|+|||+++..+|...+. ..|.+|++||+.-.
T Consensus 96 G~iteI-~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~ 141 (313)
T TIGR02238 96 MSITEV-FGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGT 141 (313)
T ss_pred CeEEEE-ECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCC
Confidence 445555 699999999999999976542 03679999998854
No 260
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=96.86 E-value=0.0016 Score=50.65 Aligned_cols=36 Identities=36% Similarity=0.481 Sum_probs=31.8
Q ss_pred EEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCC
Q 028600 36 VASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (207)
Q Consensus 36 v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~ 72 (207)
+..+.+|+||||+|..||..+.. .|.+|.+++.|.-
T Consensus 3 vl~G~pGSGKST~a~~La~~l~~-~~~~v~~i~~D~l 38 (249)
T TIGR03574 3 ILTGLPGVGKSTFSKELAKKLSE-KNIDVIILGTDLI 38 (249)
T ss_pred EEEcCCCCCHHHHHHHHHHHHHH-cCCceEEEccHHH
Confidence 44689999999999999999998 8999999988753
No 261
>PRK05439 pantothenate kinase; Provisional
Probab=96.86 E-value=0.0031 Score=50.63 Aligned_cols=44 Identities=36% Similarity=0.342 Sum_probs=35.7
Q ss_pred CCCeEEEEEeCCCCCcHHHHHHHHHHHHHHh-CCCeEEEEecCCCC
Q 028600 29 GVKDVIAVASGKGGVGKSTTAVNLAVALASK-CQLKVGLLDADVYG 73 (207)
Q Consensus 29 ~~~k~I~v~s~kgG~GkTt~a~~LA~~la~~-~g~~VlliD~d~~~ 73 (207)
+.+-+|+| ++.+|+||||+|..|+..+.+. .|.+|.+|..|-..
T Consensus 84 ~~~~iIgI-aG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy 128 (311)
T PRK05439 84 KVPFIIGI-AGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFL 128 (311)
T ss_pred CCCEEEEE-ECCCCCCHHHHHHHHHHHHHhhCCCCceEEEeccccc
Confidence 34667887 5889999999999999998762 36899999998644
No 262
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=96.85 E-value=0.0042 Score=54.60 Aligned_cols=66 Identities=14% Similarity=0.100 Sum_probs=45.6
Q ss_pred CCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCchhhHHHHHHHHHHhhhCCCCeeEEEEccccC
Q 028600 140 LDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 140 ~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~~~~~~~~~~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
.-+.++|+|+--.........+..+|.+++|++++..-.....+.+..+...+.+.+-+|+||.|.
T Consensus 51 ~~i~~IDtPGhe~fi~~m~~g~~~~D~~lLVVda~eg~~~qT~ehl~il~~lgi~~iIVVlNKiDl 116 (614)
T PRK10512 51 RVLGFIDVPGHEKFLSNMLAGVGGIDHALLVVACDDGVMAQTREHLAILQLTGNPMLTVALTKADR 116 (614)
T ss_pred cEEEEEECCCHHHHHHHHHHHhhcCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCcc
Confidence 346789999521111222444557899999998877666677777777888888865689999884
No 263
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.83 E-value=0.0033 Score=46.16 Aligned_cols=40 Identities=35% Similarity=0.272 Sum_probs=33.9
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCC
Q 028600 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (207)
Q Consensus 30 ~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~ 71 (207)
.+.+|.+ .+-.|+||||++..|+..+.. .+..+.++|.|.
T Consensus 6 ~~~~I~i-~G~~GsGKst~a~~l~~~l~~-~~~~~~~~~~d~ 45 (176)
T PRK05541 6 NGYVIWI-TGLAGSGKTTIAKALYERLKL-KYSNVIYLDGDE 45 (176)
T ss_pred CCCEEEE-EcCCCCCHHHHHHHHHHHHHH-cCCcEEEEecHH
Confidence 3667777 588899999999999999998 888999997654
No 264
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=96.82 E-value=0.023 Score=40.59 Aligned_cols=67 Identities=10% Similarity=0.085 Sum_probs=41.2
Q ss_pred CCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCc-hhhHHHHHHHHHHhhh----CCCCeeEEEEccccC
Q 028600 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQ-DVALIDARKGITMFSK----VQVPVCSFLAQIISS 205 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~-~~~~~~~~~~l~~l~~----~~~~~~g~v~N~~~~ 205 (207)
..+.+.++|+|+...........+..+|.++++.+.. +.+...+......+.. .+.++ -+|+||.|.
T Consensus 46 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pi-iiv~NK~D~ 117 (164)
T cd04139 46 EDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPL-LLVGNKCDL 117 (164)
T ss_pred EEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCE-EEEEEcccc
Confidence 3467889999874333334444555778877776654 3345555555555443 24554 688999884
No 265
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=96.81 E-value=0.0036 Score=47.83 Aligned_cols=41 Identities=22% Similarity=0.185 Sum_probs=35.6
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~ 73 (207)
+.++.+ .+.+|+|||+++.++++..++ .|.+|++++++...
T Consensus 16 g~~~li-~G~~G~GKt~~~~~~~~~~~~-~g~~~~y~s~e~~~ 56 (224)
T TIGR03880 16 GHVIVV-IGEYGTGKTTFSLQFLYQGLK-NGEKAMYISLEERE 56 (224)
T ss_pred CeEEEE-ECCCCCCHHHHHHHHHHHHHh-CCCeEEEEECCCCH
Confidence 567777 467999999999999999999 89999999998743
No 266
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=96.79 E-value=0.0022 Score=43.87 Aligned_cols=32 Identities=47% Similarity=0.511 Sum_probs=23.6
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEec
Q 028600 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDA 69 (207)
Q Consensus 33 ~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~ 69 (207)
+|.| .+.+|+||||+|..||..+ |..++-.|.
T Consensus 1 vI~I-~G~~gsGKST~a~~La~~~----~~~~i~~d~ 32 (121)
T PF13207_consen 1 VIII-SGPPGSGKSTLAKELAERL----GFPVISMDD 32 (121)
T ss_dssp EEEE-EESTTSSHHHHHHHHHHHH----TCEEEEEHH
T ss_pred CEEE-ECCCCCCHHHHHHHHHHHH----CCeEEEecc
Confidence 3555 6899999999999999866 556554443
No 267
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.77 E-value=0.0021 Score=47.43 Aligned_cols=38 Identities=21% Similarity=0.219 Sum_probs=29.9
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d 70 (207)
++-+.++| ..|+|||.+|..+|..+.+ .|++|.+++..
T Consensus 47 ~~~l~l~G-~~G~GKThLa~ai~~~~~~-~g~~v~f~~~~ 84 (178)
T PF01695_consen 47 GENLILYG-PPGTGKTHLAVAIANEAIR-KGYSVLFITAS 84 (178)
T ss_dssp --EEEEEE-STTSSHHHHHHHHHHHHHH-TT--EEEEEHH
T ss_pred CeEEEEEh-hHhHHHHHHHHHHHHHhcc-CCcceeEeecC
Confidence 55577754 6899999999999999999 99999999764
No 268
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=96.76 E-value=0.0032 Score=49.31 Aligned_cols=42 Identities=21% Similarity=0.286 Sum_probs=34.4
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCC
Q 028600 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGP 74 (207)
Q Consensus 33 ~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~ 74 (207)
-+.+.++.+|+|||+++.++|..++...|.+|+++.++....
T Consensus 20 ~L~vi~a~pg~GKT~~~l~ia~~~a~~~~~~vly~SlEm~~~ 61 (259)
T PF03796_consen 20 ELTVIAARPGVGKTAFALQIALNAALNGGYPVLYFSLEMSEE 61 (259)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTTSSEEEEEESSS-HH
T ss_pred cEEEEEecccCCchHHHHHHHHHHHHhcCCeEEEEcCCCCHH
Confidence 355558999999999999999999993369999999987553
No 269
>PRK06762 hypothetical protein; Provisional
Probab=96.76 E-value=0.0027 Score=46.09 Aligned_cols=39 Identities=31% Similarity=0.397 Sum_probs=29.9
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCC
Q 028600 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (207)
Q Consensus 30 ~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~ 73 (207)
|+++|.+ .+..|+||||+|..|+..+ |..+.+++.|...
T Consensus 1 m~~li~i-~G~~GsGKST~A~~L~~~l----~~~~~~i~~D~~r 39 (166)
T PRK06762 1 MTTLIII-RGNSGSGKTTIAKQLQERL----GRGTLLVSQDVVR 39 (166)
T ss_pred CCeEEEE-ECCCCCCHHHHHHHHHHHh----CCCeEEecHHHHH
Confidence 3566766 5999999999999999876 3368888876543
No 270
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=96.76 E-value=0.0043 Score=55.56 Aligned_cols=41 Identities=22% Similarity=0.241 Sum_probs=34.5
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~ 73 (207)
++++-+ .+..|+||||++.+++...++ .|.+|++||..-.-
T Consensus 60 GsiteI-~G~~GsGKTtLal~~~~~a~~-~G~~v~yId~E~t~ 100 (790)
T PRK09519 60 GRVIEI-YGPESSGKTTVALHAVANAQA-AGGVAAFIDAEHAL 100 (790)
T ss_pred CeEEEE-ECCCCCCHHHHHHHHHHHHHH-cCCcEEEECCccch
Confidence 455555 689999999999999998888 99999999987643
No 271
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.76 E-value=0.0031 Score=50.92 Aligned_cols=39 Identities=23% Similarity=0.306 Sum_probs=34.1
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~ 71 (207)
++++-++ +.+|+||||++.+++...++ .|.+|++||+.-
T Consensus 55 G~iteI~-Gp~GsGKTtLal~~~~~~~~-~g~~~vyId~E~ 93 (325)
T cd00983 55 GRIIEIY-GPESSGKTTLALHAIAEAQK-LGGTVAFIDAEH 93 (325)
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHHHH-cCCCEEEECccc
Confidence 5666664 68999999999999999999 999999999864
No 272
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=96.76 E-value=0.027 Score=42.17 Aligned_cols=67 Identities=13% Similarity=0.092 Sum_probs=36.1
Q ss_pred CCCCEEEEcCCCCCCcch------h--hhhhhhcCceEEEeeCCchh-hHHHHHHHHHHhhh---CCCCeeEEEEccccC
Q 028600 138 GNLDILVIDMPPGTGDAQ------L--TTTQTLQLSGALIVSTPQDV-ALIDARKGITMFSK---VQVPVCSFLAQIISS 205 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~------~--~~~~~~~~d~vi~v~~~~~~-~~~~~~~~l~~l~~---~~~~~~g~v~N~~~~ 205 (207)
..+.++++|+|+-..... + .......+|.+++|++.... +........+.+.. .+.++ -+|+|+.|.
T Consensus 87 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~v-iiV~NK~Dl 165 (204)
T cd01878 87 DGREVLLTDTVGFIRDLPHQLVEAFRSTLEEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPM-ILVLNKIDL 165 (204)
T ss_pred CCceEEEeCCCccccCCCHHHHHHHHHHHHHHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCE-EEEEEcccc
Confidence 344788888885322100 0 11123368888888877643 33333333333333 34454 688999884
No 273
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.73 E-value=0.0032 Score=49.25 Aligned_cols=38 Identities=24% Similarity=0.380 Sum_probs=33.0
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d 70 (207)
++-+.+ .+++|+|||.+++.+|..+.+ .|.+|+++.+-
T Consensus 105 ~~nl~l-~G~~G~GKThLa~Ai~~~l~~-~g~sv~f~~~~ 142 (254)
T COG1484 105 GENLVL-LGPPGVGKTHLAIAIGNELLK-AGISVLFITAP 142 (254)
T ss_pred CCcEEE-ECCCCCcHHHHHHHHHHHHHH-cCCeEEEEEHH
Confidence 445666 599999999999999999997 99999999653
No 274
>PRK09165 replicative DNA helicase; Provisional
Probab=96.71 E-value=0.0016 Score=55.75 Aligned_cols=44 Identities=20% Similarity=0.329 Sum_probs=34.9
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHh--------------CCCeEEEEecCCCCCCc
Q 028600 33 VIAVASGKGGVGKSTTAVNLAVALASK--------------CQLKVGLLDADVYGPSV 76 (207)
Q Consensus 33 ~I~v~s~kgG~GkTt~a~~LA~~la~~--------------~g~~VlliD~d~~~~~l 76 (207)
-+.+.++.+|.|||+++.++|...|+. .|++|+++-+......+
T Consensus 218 ~livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEMs~~ql 275 (497)
T PRK09165 218 DLIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEMSAEQL 275 (497)
T ss_pred ceEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcCCHHHH
Confidence 344558999999999999999999862 27899999888755433
No 275
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=96.69 E-value=0.0026 Score=47.55 Aligned_cols=37 Identities=32% Similarity=0.404 Sum_probs=30.7
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHhCCCe----EEEEecCC
Q 028600 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLK----VGLLDADV 71 (207)
Q Consensus 33 ~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~----VlliD~d~ 71 (207)
+|+| ++-+|+||||+|..|+..|.+ .|.+ +.++..|.
T Consensus 1 IIgI-~G~sgSGKTTla~~L~~~L~~-~~~~~~~~~~~~~~d~ 41 (194)
T PF00485_consen 1 IIGI-AGPSGSGKTTLAKRLAQILNK-RGIPAMEMDIILSLDD 41 (194)
T ss_dssp EEEE-EESTTSSHHHHHHHHHHHHTT-CTTTCCCSEEEEEGGG
T ss_pred CEEE-ECCCCCCHHHHHHHHHHHhCc-cCcCccceeEEEeecc
Confidence 5777 578899999999999999998 8876 66766664
No 276
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=96.67 E-value=0.0066 Score=52.31 Aligned_cols=45 Identities=18% Similarity=0.105 Sum_probs=37.4
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhC-CCeEEEEecCCCCCCcc
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKC-QLKVGLLDADVYGPSVP 77 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~-g~~VlliD~d~~~~~l~ 77 (207)
++++.+ .+.+|+|||+++.++++..++ . |.+|++|.++-....+.
T Consensus 31 Gs~~li-~G~pGsGKT~l~~qf~~~~~~-~~ge~~lyis~ee~~~~i~ 76 (509)
T PRK09302 31 GRPTLV-SGTAGTGKTLFALQFLVNGIK-RFDEPGVFVTFEESPEDII 76 (509)
T ss_pred CcEEEE-EeCCCCCHHHHHHHHHHHHHH-hcCCCEEEEEccCCHHHHH
Confidence 666777 589999999999999998888 6 99999999987554433
No 277
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=96.67 E-value=0.059 Score=41.76 Aligned_cols=66 Identities=17% Similarity=0.008 Sum_probs=40.4
Q ss_pred CCCEEEEcCCCCCCc------ch-------hhhhhhhcC-ceEEEeeCCchh-hHHHHHHHHHHhhhCCCCeeEEEEccc
Q 028600 139 NLDILVIDMPPGTGD------AQ-------LTTTQTLQL-SGALIVSTPQDV-ALIDARKGITMFSKVQVPVCSFLAQII 203 (207)
Q Consensus 139 ~~D~IiiD~~~~~~~------~~-------~~~~~~~~~-d~vi~v~~~~~~-~~~~~~~~l~~l~~~~~~~~g~v~N~~ 203 (207)
..|+.|||+|+-... .. .....+... +-+++|+++... .-....++.+++...+.+.+ +|+||.
T Consensus 124 ~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld~~~~rti-~ViTK~ 202 (240)
T smart00053 124 VLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVDPQGERTI-GVITKL 202 (240)
T ss_pred CCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHHHcCCcEE-EEEECC
Confidence 499999999975421 10 122333323 355566654332 33455678888888877774 788998
Q ss_pred cC
Q 028600 204 SS 205 (207)
Q Consensus 204 ~~ 205 (207)
|.
T Consensus 203 D~ 204 (240)
T smart00053 203 DL 204 (240)
T ss_pred CC
Confidence 85
No 278
>COG3367 Uncharacterized conserved protein [Function unknown]
Probab=96.66 E-value=0.049 Score=43.52 Aligned_cols=140 Identities=18% Similarity=0.170 Sum_probs=89.4
Q ss_pred CCCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccccCCccccccccceecccccceeeccc
Q 028600 29 GVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMG 108 (207)
Q Consensus 29 ~~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (207)
.+.+++.+.++.--+||=|++..|..++-. .|.++..+-....+--. .+. ++ -++.++
T Consensus 146 ~~a~~V~vvGTd~~vGKrTTa~~L~~~~~e-~G~~a~fvaTgqtgil~-----~~~--gv------------vvdav~-- 203 (339)
T COG3367 146 VDAKVVLVVGTDCAVGKRTTALELREAARE-EGIKAGFVATGQTGILI-----ADD--GV------------VVDAVV-- 203 (339)
T ss_pred cCCcEEEEeccccccchhHHHHHHHHHHHH-hCCccceEecCceeeEE-----ecC--ce------------Eecchh--
Confidence 347799999999999999999999999999 99999999777644111 110 00 000000
Q ss_pred ccCCCCCcccccchhhHHHHHHHHHhcccCCCCEEEEcCCCCCCcch--hhhhhh--hcCceEEEeeCCchhhHH-----
Q 028600 109 FLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQ--LTTTQT--LQLSGALIVSTPQDVALI----- 179 (207)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~D~IiiD~~~~~~~~~--~~~~~~--~~~d~vi~v~~~~~~~~~----- 179 (207)
....+-.+..+...+.++++|+|+|...+++.+.. .++..+ ...|.++++-+|+.....
T Consensus 204 ------------~DfaAGave~~v~~~~e~~~Dii~VEGQgsl~HP~y~vtl~il~gs~PDavvL~H~P~r~~~~g~P~~ 271 (339)
T COG3367 204 ------------MDFAAGAVESAVYEAEEKNPDIIFVEGQGSLTHPAYGVTLGILHGSAPDAVVLCHDPNRKYRDGFPEP 271 (339)
T ss_pred ------------HHHHHHHHHHHHHHhhhcCCCEEEEeccccccCCCcccchhhhcCCCCCeEEEEecCCCccccCCCCc
Confidence 01223344444444442599999999998765433 222222 246899999888876433
Q ss_pred --HHHHHHHHhhhC-CCCeeEEEEcc
Q 028600 180 --DARKGITMFSKV-QVPVCSFLAQI 202 (207)
Q Consensus 180 --~~~~~l~~l~~~-~~~~~g~v~N~ 202 (207)
.+.+.+...+.. +.+++|+.+|-
T Consensus 272 ip~leevi~l~e~l~~a~Vvgi~lNt 297 (339)
T COG3367 272 IPPLEEVIALYELLSNAKVVGIALNT 297 (339)
T ss_pred CCCHHHHHHHHHHccCCcEEEEEecc
Confidence 344444444433 37889999984
No 279
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=96.65 E-value=0.0044 Score=43.06 Aligned_cols=67 Identities=10% Similarity=0.090 Sum_probs=40.4
Q ss_pred CCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCchhhH-HHHHH----HHHHhhhCCCCeeEEEEccccC
Q 028600 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVAL-IDARK----GITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~~~~-~~~~~----~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
..+++.++|+|+..............+|.+++|.+...... ..... ........+.++ -+++|+.|.
T Consensus 43 ~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-ivv~nk~D~ 114 (157)
T cd00882 43 KKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVTDRESFENVKEWLLLILINKEGENIPI-ILVGNKIDL 114 (157)
T ss_pred EEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcE-EEEEecccc
Confidence 57889999999643322222344557899888888776543 33322 222333445555 588899874
No 280
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=96.65 E-value=0.0043 Score=54.25 Aligned_cols=67 Identities=10% Similarity=0.145 Sum_probs=43.2
Q ss_pred CCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCchhhHHHHHHHHHHhhhCCCCeeEEEEccccC
Q 028600 139 NLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 139 ~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~~~~~~~~~~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
.+.+.++|+|+--............+|.+++|++.+..-.....+.+..+...+++.+-+++||.|.
T Consensus 49 ~~~v~~iDtPGhe~f~~~~~~g~~~aD~aILVVDa~~G~~~qT~ehl~il~~lgi~~iIVVlNK~Dl 115 (581)
T TIGR00475 49 DYRLGFIDVPGHEKFISNAIAGGGGIDAALLVVDADEGVMTQTGEHLAVLDLLGIPHTIVVITKADR 115 (581)
T ss_pred CEEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCCC
Confidence 3677889998521111122333446899999988876444555566666777788744688899874
No 281
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=96.65 E-value=0.0013 Score=49.61 Aligned_cols=38 Identities=26% Similarity=0.242 Sum_probs=28.2
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPS 75 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~ 75 (207)
+.+|+++ +.-|+||||++..|+. + .|.+ ++|+|.-...
T Consensus 6 ~~~IglT-G~iGsGKStv~~~l~~---~-lg~~--vidaD~i~~~ 43 (204)
T PRK14733 6 TYPIGIT-GGIASGKSTATRILKE---K-LNLN--VVCADTISRE 43 (204)
T ss_pred eEEEEEE-CCCCCCHHHHHHHHHH---H-cCCe--EEeccHHHHH
Confidence 5678885 7789999999988875 2 4655 6888875433
No 282
>PHA00729 NTP-binding motif containing protein
Probab=96.65 E-value=0.0051 Score=47.00 Aligned_cols=26 Identities=31% Similarity=0.330 Sum_probs=20.9
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHH
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALA 57 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la 57 (207)
...|.++ +.+|+||||+|..||..+.
T Consensus 17 f~nIlIt-G~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 17 FVSAVIF-GKQGSGKTTYALKVARDVF 42 (226)
T ss_pred eEEEEEE-CCCCCCHHHHHHHHHHHHH
Confidence 3455564 6889999999999999875
No 283
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=96.63 E-value=0.025 Score=42.55 Aligned_cols=39 Identities=31% Similarity=0.419 Sum_probs=30.1
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCC
Q 028600 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (207)
Q Consensus 32 k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~ 73 (207)
..|+++ +..|+||||+...+...+.. . .++.++..|...
T Consensus 2 ~~i~i~-G~~GsGKTTll~~l~~~l~~-~-~~~~~~~~d~~~ 40 (199)
T TIGR00101 2 LKIGVA-GPVGSGKTALIEALTRALRQ-K-YQLAVITNDIYT 40 (199)
T ss_pred eEEEEE-CCCCCCHHHHHHHHHHhhCc-C-CcEEEEeCCcCC
Confidence 356664 88899999999999988776 4 468888777654
No 284
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=96.59 E-value=0.04 Score=40.65 Aligned_cols=68 Identities=12% Similarity=0.036 Sum_probs=42.0
Q ss_pred CCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCch-hhHHHHHHHHHHhhhCC--CCeeEEEEccccC
Q 028600 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDARKGITMFSKVQ--VPVCSFLAQIISS 205 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~-~~~~~~~~~l~~l~~~~--~~~~g~v~N~~~~ 205 (207)
..+.+.+.|+++.-.........+..+|.+++|.+... .+...+...++.+.+.. ...+-+|.|+.|.
T Consensus 47 ~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl 117 (188)
T cd04125 47 KIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVYDVTDQESFENLKFWINEINRYARENVIKVIVANKSDL 117 (188)
T ss_pred EEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCC
Confidence 34677889998643222233344557899999988753 45666666666655432 1234688899873
No 285
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=96.59 E-value=0.024 Score=50.93 Aligned_cols=67 Identities=15% Similarity=0.126 Sum_probs=42.8
Q ss_pred CCCCEEEEcCCCCCCc--------chhhhhhhhcCceEEEeeCCchhhHHHHHHHHHHhhhCCCCeeEEEEccccC
Q 028600 138 GNLDILVIDMPPGTGD--------AQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~--------~~~~~~~~~~~d~vi~v~~~~~~~~~~~~~~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
.++.+.++|||+.... .......+..+|.+++|++....-...-....+.+++.+.++ -+|+||+|.
T Consensus 321 ~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~~~pv-IlV~NK~D~ 395 (712)
T PRK09518 321 AGTDFKLVDTGGWEADVEGIDSAIASQAQIAVSLADAVVFVVDGQVGLTSTDERIVRMLRRAGKPV-VLAVNKIDD 395 (712)
T ss_pred CCEEEEEEeCCCcCCCCccHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCE-EEEEECccc
Confidence 4567888999963211 012233455799999999986532222235667777777777 488999984
No 286
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.58 E-value=0.0059 Score=43.96 Aligned_cols=36 Identities=33% Similarity=0.457 Sum_probs=30.7
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEE
Q 028600 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLL 67 (207)
Q Consensus 30 ~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~Vlli 67 (207)
++..|.+ ++.+|+||||++..+|..|.+ .|.+|.=+
T Consensus 4 ~~mki~I-TG~PGvGKtTl~~ki~e~L~~-~g~kvgGf 39 (179)
T COG1618 4 MAMKIFI-TGRPGVGKTTLVLKIAEKLRE-KGYKVGGF 39 (179)
T ss_pred cceEEEE-eCCCCccHHHHHHHHHHHHHh-cCceeeeE
Confidence 3566777 589999999999999999999 99998543
No 287
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=96.58 E-value=0.013 Score=48.63 Aligned_cols=68 Identities=10% Similarity=0.065 Sum_probs=53.3
Q ss_pred CCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCchhhHHHHHHHHHHhhhCCCCeeEEEEccccCC
Q 028600 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPVCSFLAQIISSM 206 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~~~~~~~~~~l~~l~~~~~~~~g~v~N~~~~~ 206 (207)
.++=+=|+|||+--+-+.=+...+..+|..++|+++.+.-..++.++.+-++..++|++ ..+||.|+.
T Consensus 79 ~~~~iNLLDTPGHeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~KLfeVcrlR~iPI~-TFiNKlDR~ 146 (528)
T COG4108 79 ADCLVNLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQTLKLFEVCRLRDIPIF-TFINKLDRE 146 (528)
T ss_pred CCeEEeccCCCCccccchhHHHHHHhhheeeEEEecccCccHHHHHHHHHHhhcCCceE-EEeeccccc
Confidence 34556688999733322344666668999999999999888899999999999999984 788999864
No 288
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=96.50 E-value=0.0051 Score=51.69 Aligned_cols=40 Identities=23% Similarity=0.297 Sum_probs=34.1
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCC
Q 028600 34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (207)
Q Consensus 34 I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~ 73 (207)
+.+.++.+|.|||+++.++|..+|...|++|+++.++...
T Consensus 196 liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fSlEm~~ 235 (421)
T TIGR03600 196 LIVIGARPSMGKTTLALNIAENVALREGKPVLFFSLEMSA 235 (421)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCH
Confidence 4455899999999999999999983389999999988754
No 289
>PF06418 CTP_synth_N: CTP synthase N-terminus; InterPro: IPR017456 CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism, catalysing the synthesis of CTP from UTP by amination of the pyrimidine ring at the 4-position []. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found roughly 500 bp upstream of enolase in both beta (Nitrosomonas europaea) and gamma (Escherichia coli) subdivisions of Proteobacterium [].; GO: 0003883 CTP synthase activity, 0006221 pyrimidine nucleotide biosynthetic process; PDB: 2VO1_A 3NVA_B 1VCN_A 1VCO_A 1VCM_A 3IHL_B 2AD5_A 1S1M_B.
Probab=96.48 E-value=0.059 Score=41.96 Aligned_cols=167 Identities=15% Similarity=0.135 Sum_probs=82.0
Q ss_pred eEEEEEe-CCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccccCCcccc---------cc-----cccee
Q 028600 32 DVIAVAS-GKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVT---------KD-----MKMVP 96 (207)
Q Consensus 32 k~I~v~s-~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~~~~~~~---------~~-----~~~~~ 96 (207)
|-|.|++ --.|.||-.+|+.+|..|.. +|.+|..+-+||+-+-=+-.+... +++-. +. +....
T Consensus 2 KyIfVtGGV~SglGKGi~aaSig~lLk~-~G~~V~~~K~DPYlNvD~GtmsP~-qHGEVfVt~DG~EtDLDlG~YERFl~ 79 (276)
T PF06418_consen 2 KYIFVTGGVVSGLGKGITAASIGRLLKS-RGYKVTMIKIDPYLNVDPGTMSPY-QHGEVFVTDDGGETDLDLGHYERFLD 79 (276)
T ss_dssp EEEEEEE-SSSSSSHHHHHHHHHHHHHC-TT--EEEEEEE-SSSSSCCCS-CC-TCS-EEE-TTS-EEETHHHHHHHHHT
T ss_pred cEEEEeCCccccccHHHHHHHHHHHHHh-CCeeeeeeeeccccccCCCCCCCc-CccceeEecCccccccccchHHHHhc
Confidence 4455554 56899999999999999999 999999999999552111111111 11100 00 00000
Q ss_pred cccccceeec-------------ccccCCCCCcccccchhhHHHHHHHHHhccc-CCCCEEEEcCCCCCCcchh--hhhh
Q 028600 97 IENYGVKCMS-------------MGFLVPSSSPVVWRGPMVMSALRKMSREVDW-GNLDILVIDMPPGTGDAQL--TTTQ 160 (207)
Q Consensus 97 ~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~-~~~D~IiiD~~~~~~~~~~--~~~~ 160 (207)
..-..-..+. .|..+.... .-.+-..+.+++.+..+.. .+.|++|++.+++.+|..- -+.+
T Consensus 80 ~~l~~~~niTtGkiy~~vi~kER~G~ylG~TV---QviPHitdeIk~~I~~~a~~~~~Dv~iiEiGGTVGDIEs~pFlEA 156 (276)
T PF06418_consen 80 INLTKDNNITTGKIYQSVIEKERRGDYLGKTV---QVIPHITDEIKERIRRVAKKPEPDVVIIEIGGTVGDIESLPFLEA 156 (276)
T ss_dssp S---GGGEEEHHHHHHHHHHHHHTTTTTTS------CCCHHHHHHHHHHHHHHCCCT-SEEEEEEESETTSCCCHHHHHH
T ss_pred CCCcccccccHHHHHHHHHHHHhcCcccCcee---eecchHHHHHHHHHHHhcCCCCCCEEEEecCCcccccccccHHHH
Confidence 0000001111 111111111 1112234566666666641 3799999999987654321 1222
Q ss_pred hh--------------cCceEEEeeCCchhhHHHHHHHHHHhhhCCCCeeEEEEcccc
Q 028600 161 TL--------------QLSGALIVSTPQDVALIDARKGITMFSKVQVPVCSFLAQIIS 204 (207)
Q Consensus 161 ~~--------------~~d~vi~v~~~~~~~~~~~~~~l~~l~~~~~~~~g~v~N~~~ 204 (207)
++ +...|-.+-..+...-..++..++.|+..|++.- +++=|.+
T Consensus 157 irQl~~~~G~~n~~~IHvtlVP~l~~~gE~KTKPtQhSVk~Lr~~GI~PD-ilvcRs~ 213 (276)
T PF06418_consen 157 IRQLRNEVGRENVCFIHVTLVPYLKAAGEQKTKPTQHSVKELRSIGIQPD-ILVCRSE 213 (276)
T ss_dssp HHHHHHHH-TTCEEEEEEEE--EETTTTEE-HHHHHHHHHHHHHTT---S-EEEEEES
T ss_pred HHHHHHHhCcCcEEEEEEeeeeeeCCCCccCCccHHHHHHHHHhCCCCCC-EEEEcCC
Confidence 22 2223333345666677889999999999998874 4444444
No 290
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.46 E-value=0.0034 Score=47.09 Aligned_cols=40 Identities=33% Similarity=0.332 Sum_probs=34.5
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCC
Q 028600 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGP 74 (207)
Q Consensus 33 ~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~ 74 (207)
.|.+ ++-+|+||||.|-+||..|.+ .+.+|..+..|....
T Consensus 3 LiIl-TGyPgsGKTtfakeLak~L~~-~i~~vi~l~kdy~~~ 42 (261)
T COG4088 3 LIIL-TGYPGSGKTTFAKELAKELRQ-EIWRVIHLEKDYLRG 42 (261)
T ss_pred eEEE-ecCCCCCchHHHHHHHHHHHH-hhhhccccchhhhhh
Confidence 4444 688999999999999999999 999999998887553
No 291
>PRK09354 recA recombinase A; Provisional
Probab=96.46 E-value=0.0065 Score=49.51 Aligned_cols=39 Identities=18% Similarity=0.287 Sum_probs=34.4
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~ 71 (207)
++++-|+ +..|+||||++.+++...++ .|.++++||+.-
T Consensus 60 G~IteI~-G~~GsGKTtLal~~~~~~~~-~G~~~~yId~E~ 98 (349)
T PRK09354 60 GRIVEIY-GPESSGKTTLALHAIAEAQK-AGGTAAFIDAEH 98 (349)
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHHHH-cCCcEEEECCcc
Confidence 5666665 68999999999999999999 999999999875
No 292
>PRK06526 transposase; Provisional
Probab=96.45 E-value=0.0023 Score=50.04 Aligned_cols=37 Identities=24% Similarity=0.366 Sum_probs=30.6
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEec
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDA 69 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~ 69 (207)
.+-+.+ .+.+|+|||+++.++|..+.+ .|++|+++.+
T Consensus 98 ~~nlll-~Gp~GtGKThLa~al~~~a~~-~g~~v~f~t~ 134 (254)
T PRK06526 98 KENVVF-LGPPGTGKTHLAIGLGIRACQ-AGHRVLFATA 134 (254)
T ss_pred CceEEE-EeCCCCchHHHHHHHHHHHHH-CCCchhhhhH
Confidence 344555 578899999999999999999 9999988644
No 293
>PRK04004 translation initiation factor IF-2; Validated
Probab=96.44 E-value=0.018 Score=50.45 Aligned_cols=64 Identities=17% Similarity=0.184 Sum_probs=42.3
Q ss_pred CEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCchhhHHHHHHHHHHhhhCCCCeeEEEEccccC
Q 028600 141 DILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 141 D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~~~~~~~~~~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
.+.++|||+.-............+|.+++|++....-.......+..+...+.++ -+++|+.|.
T Consensus 72 ~i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~~~vpi-IvviNK~D~ 135 (586)
T PRK04004 72 GLLFIDTPGHEAFTNLRKRGGALADIAILVVDINEGFQPQTIEAINILKRRKTPF-VVAANKIDR 135 (586)
T ss_pred CEEEEECCChHHHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCE-EEEEECcCC
Confidence 4899999963221122222334699999999987533344555566667778885 589999985
No 294
>PRK12377 putative replication protein; Provisional
Probab=96.42 E-value=0.0066 Score=47.26 Aligned_cols=37 Identities=24% Similarity=0.251 Sum_probs=31.7
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecC
Q 028600 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70 (207)
Q Consensus 32 k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d 70 (207)
.-+.+ .+..|+|||+++..+|..+.+ .|++|.++.+.
T Consensus 102 ~~l~l-~G~~GtGKThLa~AIa~~l~~-~g~~v~~i~~~ 138 (248)
T PRK12377 102 TNFVF-SGKPGTGKNHLAAAIGNRLLA-KGRSVIVVTVP 138 (248)
T ss_pred CeEEE-ECCCCCCHHHHHHHHHHHHHH-cCCCeEEEEHH
Confidence 34555 578899999999999999999 99999998764
No 295
>PRK13507 formate--tetrahydrofolate ligase; Provisional
Probab=96.41 E-value=0.0077 Score=51.38 Aligned_cols=51 Identities=31% Similarity=0.244 Sum_probs=42.7
Q ss_pred CCeEEEEEe---CCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccccC
Q 028600 30 VKDVIAVAS---GKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQ 84 (207)
Q Consensus 30 ~~k~I~v~s---~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~~ 84 (207)
.+|.|.|++ +.-|+||||++..|+.+|.+ .|+++++. .+.||+--.||.+.
T Consensus 62 ~gklIlVTaitPTP~GEGKtTttIGL~~aL~~-lgk~~~~~---lRePSlGP~FGiKG 115 (587)
T PRK13507 62 DGKYIDVTAITPTPLGEGKSTTTMGLVQGLGK-RGKKVSGA---IRQPSGGPTMNIKG 115 (587)
T ss_pred CCeEEEEeccCCCCCCCCccchhhhHHHHHHh-hcCceEEE---EecCCcCCcCCccc
Confidence 478887765 45699999999999999999 99999874 67788888888764
No 296
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.41 E-value=0.013 Score=47.72 Aligned_cols=40 Identities=28% Similarity=0.226 Sum_probs=30.3
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHH--h---CCCeEEEEecCCC
Q 028600 33 VIAVASGKGGVGKSTTAVNLAVALAS--K---CQLKVGLLDADVY 72 (207)
Q Consensus 33 ~I~v~s~kgG~GkTt~a~~LA~~la~--~---~g~~VlliD~d~~ 72 (207)
.|+-..+..|+|||+++.+||...+. . .+.+|++||..-.
T Consensus 127 ~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~t 171 (344)
T PLN03187 127 CITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGT 171 (344)
T ss_pred eEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCC
Confidence 45555799999999999999876652 0 1369999999753
No 297
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=96.40 E-value=0.022 Score=41.91 Aligned_cols=37 Identities=14% Similarity=-0.058 Sum_probs=29.8
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d 70 (207)
+.+... .-.|=||||.|..+|.-.+- +|+||+++=+=
T Consensus 22 Gli~VY--tGdGKGKTTAAlGlalRAaG-~G~rV~iiQFl 58 (178)
T PRK07414 22 GLVQVF--TSSQRNFFTSVMAQALRIAG-QGTPVLIVQFL 58 (178)
T ss_pred CEEEEE--eCCCCCchHHHHHHHHHHhc-CCCEEEEEEEe
Confidence 444444 44577999999999999999 99999999553
No 298
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=96.39 E-value=0.0089 Score=45.17 Aligned_cols=68 Identities=10% Similarity=0.090 Sum_probs=44.2
Q ss_pred CCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCchhhHHHHHHHHHHhhhCCCCeeEEEEccccC
Q 028600 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~~~~~~~~~~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
.+..+.|+|||+.-.........+..+|.+++|++....-.....+....+...+.+.+-+++||+|.
T Consensus 75 ~~~~~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~~~~~~iIvviNK~D~ 142 (208)
T cd04166 75 PKRKFIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSLLGIRHVVVAVNKMDL 142 (208)
T ss_pred CCceEEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCCcEEEEEEchhc
Confidence 56688999999632111122444567899999999876544445555555566665655578999985
No 299
>PF01268 FTHFS: Formate--tetrahydrofolate ligase; InterPro: IPR000559 Formate--tetrahydrofolate ligase (6.3.4.3 from EC) (formyltetrahydrofolate synthetase) (FTHFS) is one of the enzymes participating in the transfer of one-carbon units, an essential element of various biosynthetic pathways. In many of these processes the transfers of one-carbon units are mediated by the coenzyme tetrahydrofolate (THF). In eukaryotes the FTHFS activity is expressed by a multifunctional enzyme, C-1-tetrahydrofolate synthase (C1-THF synthase), which also catalyses the dehydrogenase and cyclohydrolase activities. Two forms of C1-THF synthases are known [], one is located in the mitochondrial matrix, while the second one is cytoplasmic. In both forms the FTHFS domain consists of about 600 amino acid residues and is located in the C-terminal section of C1-THF synthase. In prokaryotes FTHFS activity is expressed by a monofunctional homotetrameric enzyme of about 560 amino acid residues []. The crystal structure of N(10)-formyltetrahydrofolate synthetase from Moorella thermoacetica shows that the subunit is composed of three domains organised around three mixed beta-sheets. There are two cavities between adjacent domains. One of them was identified as the nucleotide binding site by homology modelling. The large domain contains a seven-stranded beta-sheet surrounded by helices on both sides. The second domain contains a five-stranded beta-sheet with two alpha-helices packed on one side while the other two are a wall of the active site cavity. The third domain contains a four-stranded beta-sheet forming a half-barrel. The concave side is covered by two helices while the convex side is another wall of the large cavity. Arg 97 is likely involved in formyl phosphate binding. The tetrameric molecule is relatively flat with the shape of the letter X, and the active sites are located at the end of the subunits far from the subunit interface [].; GO: 0004329 formate-tetrahydrofolate ligase activity, 0005524 ATP binding, 0009396 folic acid-containing compound biosynthetic process; PDB: 2EO2_A 3DO6_B 1FPM_A 3RBO_A 3PZX_B 3QB6_A 1FP7_A 3SIN_B 1EG7_A 3QUS_A ....
Probab=96.38 E-value=0.0044 Score=52.87 Aligned_cols=53 Identities=28% Similarity=0.278 Sum_probs=35.3
Q ss_pred CCCCeEEEEEe---CCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccccC
Q 028600 28 DGVKDVIAVAS---GKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQ 84 (207)
Q Consensus 28 ~~~~k~I~v~s---~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~~ 84 (207)
...+|.|.|++ +.-|.||||++..|+.+|++ .|+++++. .+.||+--.||.+.
T Consensus 51 ~~~gklilVTaitPTp~GEGKtTttiGL~~al~~-lg~~~~~~---lRePSlGP~fG~KG 106 (557)
T PF01268_consen 51 KPDGKLILVTAITPTPAGEGKTTTTIGLAQALNR-LGKKAIAA---LREPSLGPVFGIKG 106 (557)
T ss_dssp S---EEEEEEESS--TTS-SHHHHHHHHHHHHHH-TT--EEEE---E----CHHHHCST-
T ss_pred cCCCcEEEEEecCCCCCCCCceeHHHHHHHHHHh-cCCceEEE---EecCCCCCccCccc
Confidence 33588888776 45699999999999999999 99999874 77888888888774
No 300
>KOG2749 consensus mRNA cleavage and polyadenylation factor IA/II complex, subunit CLP1 [RNA processing and modification]
Probab=96.37 E-value=0.0095 Score=48.13 Aligned_cols=45 Identities=24% Similarity=0.149 Sum_probs=37.9
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCcc
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVP 77 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~ 77 (207)
++++++. +-..+||||++.-|-.+..+ .|++.+.+|+|+.++++.
T Consensus 103 GPrv~vV-Gp~d~GKsTl~r~L~nyavk-~gr~Plfv~LDvgQ~sit 147 (415)
T KOG2749|consen 103 GPRVMVV-GPTDVGKSTLCRILLNYAVK-QGRRPLFVELDVGQGSIT 147 (415)
T ss_pred CCEEEEE-CCCccchHHHHHHHHHHHHH-cCCcceEEEcCCCCCcee
Confidence 5555554 45578999999999999999 899999999999998754
No 301
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=96.36 E-value=0.0038 Score=44.92 Aligned_cols=25 Identities=48% Similarity=0.574 Sum_probs=20.7
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHH
Q 028600 33 VIAVASGKGGVGKSTTAVNLAVALAS 58 (207)
Q Consensus 33 ~I~v~s~kgG~GkTt~a~~LA~~la~ 58 (207)
+|++ |+++|+||||+|..||..+.-
T Consensus 2 ~ItI-sG~pGsG~TTva~~lAe~~gl 26 (179)
T COG1102 2 VITI-SGLPGSGKTTVARELAEHLGL 26 (179)
T ss_pred EEEe-ccCCCCChhHHHHHHHHHhCC
Confidence 4666 899999999999999885544
No 302
>PRK11058 GTPase HflX; Provisional
Probab=96.33 E-value=0.084 Score=44.50 Aligned_cols=64 Identities=16% Similarity=0.113 Sum_probs=36.2
Q ss_pred CEEEEcCCCCCCc---c-----hhhhhhhhcCceEEEeeCCchhh-HHHH---HHHHHHhhhCCCCeeEEEEccccC
Q 028600 141 DILVIDMPPGTGD---A-----QLTTTQTLQLSGALIVSTPQDVA-LIDA---RKGITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 141 D~IiiD~~~~~~~---~-----~~~~~~~~~~d~vi~v~~~~~~~-~~~~---~~~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
.++++||++-... . ..++.....+|.+++|++.+... ...+ .+.++.+...+.+++ +|+||.|.
T Consensus 246 ~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvI-iV~NKiDL 321 (426)
T PRK11058 246 ETVLADTVGFIRHLPHDLVAAFKATLQETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTL-LVMNKIDM 321 (426)
T ss_pred eEEEEecCcccccCCHHHHHHHHHHHHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEE-EEEEcccC
Confidence 5677788754221 0 01122334688888888876542 2332 344555544456664 88899873
No 303
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=96.33 E-value=0.015 Score=41.90 Aligned_cols=67 Identities=12% Similarity=0.107 Sum_probs=40.6
Q ss_pred CCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCch-hhHHHHHH-HHHHhhhC--CCCeeEEEEccccC
Q 028600 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDARK-GITMFSKV--QVPVCSFLAQIISS 205 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~-~~~~~~~~-~l~~l~~~--~~~~~g~v~N~~~~ 205 (207)
..+.+.++|+|+......+.......+|.++++.+.+. .+...... .+..+... +.++ -+|.|+.|.
T Consensus 46 ~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~-ivv~nK~Dl 116 (171)
T cd00157 46 KQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVPI-ILVGTKIDL 116 (171)
T ss_pred EEEEEEEEeCCCcccccccchhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCE-EEEEccHHh
Confidence 56788999999643222222233346899999998876 44444332 34444433 3555 688899873
No 304
>PRK08760 replicative DNA helicase; Provisional
Probab=96.33 E-value=0.0068 Score=51.70 Aligned_cols=41 Identities=22% Similarity=0.310 Sum_probs=34.4
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCC
Q 028600 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (207)
Q Consensus 33 ~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~ 73 (207)
-+.+.++.+|.|||+++.++|...|...|++|+++.++...
T Consensus 230 ~LivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlEMs~ 270 (476)
T PRK08760 230 DLIILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSMEMSA 270 (476)
T ss_pred ceEEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEeccCCH
Confidence 34455899999999999999999986369999999887754
No 305
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.33 E-value=0.0097 Score=36.58 Aligned_cols=32 Identities=47% Similarity=0.546 Sum_probs=26.8
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEec
Q 028600 34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDA 69 (207)
Q Consensus 34 I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~ 69 (207)
|++ .+..|+||||++..|+..+ .+.++.++|.
T Consensus 2 i~i-~G~~gsGKst~~~~l~~~l---~~~~~~~i~~ 33 (69)
T cd02019 2 IAI-TGGSGSGKSTVAKKLAEQL---GGRSVVVLDE 33 (69)
T ss_pred EEE-ECCCCCCHHHHHHHHHHHh---cCCCEEEEeE
Confidence 556 5888999999999999998 4778888876
No 306
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=96.28 E-value=0.011 Score=44.00 Aligned_cols=37 Identities=27% Similarity=0.249 Sum_probs=31.7
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEec
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDA 69 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~ 69 (207)
++.|+| -+-.|+||||++..|+..+.. .|++|.++-.
T Consensus 3 g~~Ivi-eG~~GsGKsT~~~~L~~~l~~-~g~~v~~~~~ 39 (195)
T TIGR00041 3 GMFIVI-EGIDGAGKTTQANLLKKLLQE-NGYDVLFTRE 39 (195)
T ss_pred ceEEEE-ECCCCCCHHHHHHHHHHHHHH-cCCeEEEEeC
Confidence 567888 478899999999999999999 9999977643
No 307
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=96.23 E-value=0.0094 Score=50.29 Aligned_cols=41 Identities=20% Similarity=0.284 Sum_probs=34.7
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCC
Q 028600 34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGP 74 (207)
Q Consensus 34 I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~ 74 (207)
+.+.++.+|.|||+++.++|..+|...|++|+++.++....
T Consensus 197 l~vi~g~pg~GKT~~~l~~a~~~a~~~g~~vl~~SlEm~~~ 237 (434)
T TIGR00665 197 LIILAARPSMGKTAFALNIAENAAIKEGKPVAFFSLEMSAE 237 (434)
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhCCCeEEEEeCcCCHH
Confidence 44558999999999999999999864699999999887553
No 308
>PRK08506 replicative DNA helicase; Provisional
Probab=96.23 E-value=0.0099 Score=50.71 Aligned_cols=41 Identities=15% Similarity=0.274 Sum_probs=35.3
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCC
Q 028600 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGP 74 (207)
Q Consensus 33 ~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~ 74 (207)
-+.+.++.+|.|||+++.++|..+++ .|++|+++-++....
T Consensus 193 ~LivIaarpg~GKT~fal~ia~~~~~-~g~~V~~fSlEMs~~ 233 (472)
T PRK08506 193 DLIIIAARPSMGKTTLCLNMALKALN-QDKGVAFFSLEMPAE 233 (472)
T ss_pred ceEEEEcCCCCChHHHHHHHHHHHHh-cCCcEEEEeCcCCHH
Confidence 34555899999999999999999998 899999998887553
No 309
>PRK05642 DNA replication initiation factor; Validated
Probab=96.21 E-value=0.0086 Score=46.22 Aligned_cols=35 Identities=20% Similarity=0.135 Sum_probs=31.2
Q ss_pred EEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCC
Q 028600 36 VASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (207)
Q Consensus 36 v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~ 71 (207)
+..+..|+|||.++..++..+.+ .|++|++++++-
T Consensus 49 ~l~G~~G~GKTHLl~a~~~~~~~-~~~~v~y~~~~~ 83 (234)
T PRK05642 49 YLWGKDGVGRSHLLQAACLRFEQ-RGEPAVYLPLAE 83 (234)
T ss_pred EEECCCCCCHHHHHHHHHHHHHh-CCCcEEEeeHHH
Confidence 44689999999999999999998 899999999864
No 310
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.20 E-value=0.0088 Score=48.53 Aligned_cols=38 Identities=24% Similarity=0.191 Sum_probs=32.6
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCC
Q 028600 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (207)
Q Consensus 32 k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~ 71 (207)
+-+.+ .+..|+|||+++..+|..+.+ .|++|++++++-
T Consensus 184 ~~Lll-~G~~GtGKThLa~aIa~~l~~-~g~~V~y~t~~~ 221 (329)
T PRK06835 184 ENLLF-YGNTGTGKTFLSNCIAKELLD-RGKSVIYRTADE 221 (329)
T ss_pred CcEEE-ECCCCCcHHHHHHHHHHHHHH-CCCeEEEEEHHH
Confidence 44556 468899999999999999999 999999998753
No 311
>PLN02924 thymidylate kinase
Probab=96.19 E-value=0.014 Score=44.68 Aligned_cols=40 Identities=23% Similarity=0.293 Sum_probs=33.9
Q ss_pred cCCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEe
Q 028600 27 IDGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLD 68 (207)
Q Consensus 27 ~~~~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD 68 (207)
..++++.|+|- +-.|+||||.+..|+..|.. .|.+|.++.
T Consensus 12 ~~~~g~~IviE-GiDGsGKsTq~~~L~~~l~~-~g~~v~~~~ 51 (220)
T PLN02924 12 VESRGALIVLE-GLDRSGKSTQCAKLVSFLKG-LGVAAELWR 51 (220)
T ss_pred cCCCCeEEEEE-CCCCCCHHHHHHHHHHHHHh-cCCCceeee
Confidence 34558889985 77899999999999999999 999986653
No 312
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=96.17 E-value=0.012 Score=46.56 Aligned_cols=67 Identities=21% Similarity=0.280 Sum_probs=48.1
Q ss_pred CCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCchhhHHHHHHHHHHhhhCCCCeeEEEEcccc
Q 028600 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPVCSFLAQIIS 204 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~~~~~~~~~~l~~l~~~~~~~~g~v~N~~~ 204 (207)
..--|--+|||+-.+-.-.-+....++|+.|+|+.+....+.++++.+-..++.|.+.+-+.+|++|
T Consensus 73 ~~rhyahVDcPGHaDYvKNMItgAaqmDgAILVVsA~dGpmPqTrEHiLlarqvGvp~ivvflnK~D 139 (394)
T COG0050 73 ANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYIVVFLNKVD 139 (394)
T ss_pred CCceEEeccCCChHHHHHHHhhhHHhcCccEEEEEcCCCCCCcchhhhhhhhhcCCcEEEEEEeccc
Confidence 3445666799853221111111222689999999999888889998888889999998889999987
No 313
>COG2759 MIS1 Formyltetrahydrofolate synthetase [Nucleotide transport and metabolism]
Probab=96.16 E-value=0.0076 Score=50.06 Aligned_cols=52 Identities=27% Similarity=0.268 Sum_probs=42.7
Q ss_pred CCCeEEEEEeC---CCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccccC
Q 028600 29 GVKDVIAVASG---KGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQ 84 (207)
Q Consensus 29 ~~~k~I~v~s~---kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~~ 84 (207)
+.+|.|.|++. --|.||||++..|+.+|.+ .|+++.+ ..+.|++--.||...
T Consensus 50 ~~gKlILVTaitPTPaGEGKsTttiGL~~al~~-lgK~~i~---alRePSlGP~fGiKG 104 (554)
T COG2759 50 PDGKLILVTAITPTPAGEGKTTTTIGLVDALNK-LGKKAII---ALREPSLGPVFGIKG 104 (554)
T ss_pred CCceEEEEEecCCCCCCCCcceeeehHHHHHHh-cCchheE---EeccCCcCCcccccc
Confidence 35888877664 5699999999999999999 9999886 467788888888764
No 314
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.15 E-value=0.011 Score=47.63 Aligned_cols=38 Identities=29% Similarity=0.232 Sum_probs=32.6
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d 70 (207)
.+-+.+ .+..|+|||.++..+|..+++ .|.+|.++.+.
T Consensus 156 ~~gl~L-~G~~G~GKThLa~Aia~~l~~-~g~~v~~~~~~ 193 (306)
T PRK08939 156 VKGLYL-YGDFGVGKSYLLAAIANELAK-KGVSSTLLHFP 193 (306)
T ss_pred CCeEEE-ECCCCCCHHHHHHHHHHHHHH-cCCCEEEEEHH
Confidence 445666 478899999999999999999 99999999764
No 315
>PRK13949 shikimate kinase; Provisional
Probab=96.14 E-value=0.032 Score=40.79 Aligned_cols=33 Identities=33% Similarity=0.408 Sum_probs=24.6
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCC
Q 028600 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (207)
Q Consensus 32 k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~ 71 (207)
+.|.++ +..|+||||++..||..+.. -.+|+|.
T Consensus 2 ~~I~li-G~~GsGKstl~~~La~~l~~------~~id~D~ 34 (169)
T PRK13949 2 ARIFLV-GYMGAGKTTLGKALARELGL------SFIDLDF 34 (169)
T ss_pred cEEEEE-CCCCCCHHHHHHHHHHHcCC------CeecccH
Confidence 446664 78899999999999986643 4677663
No 316
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=96.12 E-value=0.073 Score=44.31 Aligned_cols=63 Identities=17% Similarity=0.072 Sum_probs=35.0
Q ss_pred CEEEEcCCCCCCcc-------hhhhhhhhcCceEEEeeCCc----hhhHHHHHHHHHHhhhC-----CCCeeEEEEcccc
Q 028600 141 DILVIDMPPGTGDA-------QLTTTQTLQLSGALIVSTPQ----DVALIDARKGITMFSKV-----QVPVCSFLAQIIS 204 (207)
Q Consensus 141 D~IiiD~~~~~~~~-------~~~~~~~~~~d~vi~v~~~~----~~~~~~~~~~l~~l~~~-----~~~~~g~v~N~~~ 204 (207)
.++++|+|+-.... ...+..+..+|.++.|++.. ..........++.+... +.+. -+|+|+.|
T Consensus 208 ~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~-IlVlNKiD 286 (390)
T PRK12298 208 SFVVADIPGLIEGASEGAGLGIRFLKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPR-WLVFNKID 286 (390)
T ss_pred EEEEEeCCCccccccchhhHHHHHHHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCE-EEEEeCCc
Confidence 47888887643211 11123345678888887765 22445555555555543 3444 47778877
No 317
>PRK09183 transposase/IS protein; Provisional
Probab=96.12 E-value=0.011 Score=46.34 Aligned_cols=37 Identities=30% Similarity=0.447 Sum_probs=31.1
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEec
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDA 69 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~ 69 (207)
+..+.+ .+..|+|||+++..+|..+.. .|++|+++++
T Consensus 102 ~~~v~l-~Gp~GtGKThLa~al~~~a~~-~G~~v~~~~~ 138 (259)
T PRK09183 102 NENIVL-LGPSGVGKTHLAIALGYEAVR-AGIKVRFTTA 138 (259)
T ss_pred CCeEEE-EeCCCCCHHHHHHHHHHHHHH-cCCeEEEEeH
Confidence 445556 478899999999999999888 9999999874
No 318
>PRK08727 hypothetical protein; Validated
Probab=96.11 E-value=0.011 Score=45.66 Aligned_cols=37 Identities=24% Similarity=0.314 Sum_probs=32.0
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCC
Q 028600 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (207)
Q Consensus 33 ~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~ 71 (207)
-+.+ .+..|+|||.++..++..+.+ .|++|.++.++-
T Consensus 43 ~l~l-~G~~G~GKThL~~a~~~~~~~-~~~~~~y~~~~~ 79 (233)
T PRK08727 43 WLYL-SGPAGTGKTHLALALCAAAEQ-AGRSSAYLPLQA 79 (233)
T ss_pred eEEE-ECCCCCCHHHHHHHHHHHHHH-cCCcEEEEeHHH
Confidence 3555 688999999999999999999 899999998754
No 319
>PRK06893 DNA replication initiation factor; Validated
Probab=96.10 E-value=0.01 Score=45.57 Aligned_cols=35 Identities=14% Similarity=-0.036 Sum_probs=31.4
Q ss_pred EEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecC
Q 028600 35 AVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70 (207)
Q Consensus 35 ~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d 70 (207)
.+..+..|+|||+++..+|..+.+ +|.+|.+++++
T Consensus 42 l~l~G~~G~GKThL~~ai~~~~~~-~~~~~~y~~~~ 76 (229)
T PRK06893 42 FYIWGGKSSGKSHLLKAVSNHYLL-NQRTAIYIPLS 76 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH-cCCCeEEeeHH
Confidence 344699999999999999999999 89999999985
No 320
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=96.08 E-value=0.01 Score=45.36 Aligned_cols=40 Identities=35% Similarity=0.393 Sum_probs=31.3
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHh-CCCeEEEEecCCCC
Q 028600 33 VIAVASGKGGVGKSTTAVNLAVALASK-CQLKVGLLDADVYG 73 (207)
Q Consensus 33 ~I~v~s~kgG~GkTt~a~~LA~~la~~-~g~~VlliD~d~~~ 73 (207)
+|++ ++..|+||||++..|+..+... .+.+|.+|-+|-..
T Consensus 1 IigI-~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~ 41 (220)
T cd02025 1 IIGI-AGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFL 41 (220)
T ss_pred CEEe-eCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCccc
Confidence 3666 5889999999999999998741 35688888888543
No 321
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=96.07 E-value=0.014 Score=43.31 Aligned_cols=35 Identities=31% Similarity=0.305 Sum_probs=30.0
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEec
Q 028600 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDA 69 (207)
Q Consensus 33 ~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~ 69 (207)
+|+|. +-.|+||||++..|+..+.. .|.+|..+..
T Consensus 2 ~I~ie-G~~GsGKtT~~~~L~~~l~~-~g~~v~~~~~ 36 (200)
T cd01672 2 FIVFE-GIDGAGKTTLIELLAERLEA-RGYEVVLTRE 36 (200)
T ss_pred EEEEE-CCCCCCHHHHHHHHHHHHHH-cCCeEEEEeC
Confidence 56674 78899999999999999998 9999977754
No 322
>PRK08006 replicative DNA helicase; Provisional
Probab=96.07 E-value=0.012 Score=50.05 Aligned_cols=41 Identities=22% Similarity=0.271 Sum_probs=34.4
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCC
Q 028600 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (207)
Q Consensus 33 ~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~ 73 (207)
-+.|.++.+|.|||+++.|+|..+|...|++|+++-+....
T Consensus 225 ~LiiIaarPgmGKTafalnia~~~a~~~g~~V~~fSlEM~~ 265 (471)
T PRK08006 225 DLIIVAARPSMGKTTFAMNLCENAAMLQDKPVLIFSLEMPG 265 (471)
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHhcCCeEEEEeccCCH
Confidence 34455899999999999999999985379999999888654
No 323
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=96.06 E-value=0.013 Score=42.82 Aligned_cols=32 Identities=25% Similarity=0.222 Sum_probs=25.3
Q ss_pred EEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecC
Q 028600 35 AVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70 (207)
Q Consensus 35 ~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d 70 (207)
.+..+..|+|||++|..+|.. .|.+++++...
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~----~~~~~~y~at~ 33 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE----LGGPVTYIATA 33 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh----cCCCeEEEEcc
Confidence 345688999999999999864 57799999544
No 324
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=96.06 E-value=0.01 Score=45.24 Aligned_cols=68 Identities=12% Similarity=0.037 Sum_probs=43.9
Q ss_pred CCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCchh-------hHHHHHHHHHHhhhCCCCeeEEEEccccC
Q 028600 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDV-------ALIDARKGITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~~-------~~~~~~~~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
..+.+.++|+|+...........+..+|.+++|+++... ....+.+.+......+.+.+-+++||.|.
T Consensus 75 ~~~~i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiivvNK~Dl 149 (219)
T cd01883 75 EKYRFTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLIVAVNKMDD 149 (219)
T ss_pred CCeEEEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHcCCCeEEEEEEcccc
Confidence 678899999996322112224445569999999998763 12234444555556665555689999985
No 325
>PRK06749 replicative DNA helicase; Provisional
Probab=96.05 E-value=0.012 Score=49.57 Aligned_cols=39 Identities=23% Similarity=0.388 Sum_probs=34.4
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCC
Q 028600 34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (207)
Q Consensus 34 I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~ 73 (207)
+.|.++.+|.|||+++.++|...|+ .|++|+++.++...
T Consensus 188 LiiIaarPgmGKTafal~ia~~~a~-~g~~v~~fSlEMs~ 226 (428)
T PRK06749 188 FVVLGARPSMGKTAFALNVGLHAAK-SGAAVGLFSLEMSS 226 (428)
T ss_pred EEEEEeCCCCCchHHHHHHHHHHHh-cCCCEEEEEeeCCH
Confidence 4445899999999999999999998 89999999888755
No 326
>PRK06904 replicative DNA helicase; Validated
Probab=96.03 E-value=0.015 Score=49.66 Aligned_cols=40 Identities=20% Similarity=0.284 Sum_probs=34.1
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCC
Q 028600 34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (207)
Q Consensus 34 I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~ 73 (207)
+.|.++.+|.|||+++.++|...|...|++|+++-+....
T Consensus 223 LiiIaarPg~GKTafalnia~~~a~~~g~~Vl~fSlEMs~ 262 (472)
T PRK06904 223 LIIVAARPSMGKTTFAMNLCENAAMASEKPVLVFSLEMPA 262 (472)
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCH
Confidence 4455899999999999999999986469999999887654
No 327
>PRK05748 replicative DNA helicase; Provisional
Probab=96.03 E-value=0.012 Score=49.85 Aligned_cols=44 Identities=30% Similarity=0.456 Sum_probs=35.7
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPS 75 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~ 75 (207)
+..|.+ ++.+|.|||+++.++|...|...|++|+++.+......
T Consensus 203 G~livI-aarpg~GKT~~al~ia~~~a~~~g~~v~~fSlEms~~~ 246 (448)
T PRK05748 203 NDLIIV-AARPSVGKTAFALNIAQNVATKTDKNVAIFSLEMGAES 246 (448)
T ss_pred CceEEE-EeCCCCCchHHHHHHHHHHHHhCCCeEEEEeCCCCHHH
Confidence 344444 89999999999999999988536999999988875533
No 328
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=96.02 E-value=0.017 Score=46.01 Aligned_cols=43 Identities=35% Similarity=0.384 Sum_probs=33.9
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHh-CCCeEEEEecCCCC
Q 028600 30 VKDVIAVASGKGGVGKSTTAVNLAVALASK-CQLKVGLLDADVYG 73 (207)
Q Consensus 30 ~~k~I~v~s~kgG~GkTt~a~~LA~~la~~-~g~~VlliD~d~~~ 73 (207)
.+-+|+| .+..|+||||++..|+..+.+. .+.+|.++..|...
T Consensus 61 ~p~IIGI-aG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~ 104 (290)
T TIGR00554 61 IPYIISI-AGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFL 104 (290)
T ss_pred CCEEEEE-ECCCCCCHHHHHHHHHHHHhhcCCCCceEEEeccccc
Confidence 3667888 6888999999999999888851 24579999888654
No 329
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=96.01 E-value=0.011 Score=50.01 Aligned_cols=68 Identities=15% Similarity=0.054 Sum_probs=51.5
Q ss_pred CCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCchhhH-------HHHHHHHHHhhhCCCCeeEEEEccccC
Q 028600 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVAL-------IDARKGITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~~~~-------~~~~~~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
+.+.+.|||+|+-..-.......+..+|.+++|+++...-. .++.+.+..+...+++.+-+++|++|.
T Consensus 83 ~~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~gi~~iiv~vNKmD~ 157 (446)
T PTZ00141 83 PKYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTLGVKQMIVCINKMDD 157 (446)
T ss_pred CCeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcCCCeEEEEEEcccc
Confidence 67899999999632222233455667999999999876432 577888888899999977789999983
No 330
>PTZ00035 Rad51 protein; Provisional
Probab=95.99 E-value=0.031 Score=45.60 Aligned_cols=41 Identities=20% Similarity=0.154 Sum_probs=31.0
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHh-----CCCeEEEEecCCC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASK-----CQLKVGLLDADVY 72 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~-----~g~~VlliD~d~~ 72 (207)
+.++.+ .+..|+|||+++..++.....- .+.+|++||....
T Consensus 118 G~iteI-~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~ 163 (337)
T PTZ00035 118 GSITEL-FGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGT 163 (337)
T ss_pred CeEEEE-ECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCC
Confidence 556666 5799999999999998765410 3569999998753
No 331
>COG4240 Predicted kinase [General function prediction only]
Probab=95.98 E-value=0.016 Score=44.15 Aligned_cols=42 Identities=29% Similarity=0.329 Sum_probs=34.3
Q ss_pred CCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCC-CeEEEEecCC
Q 028600 28 DGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQ-LKVGLLDADV 71 (207)
Q Consensus 28 ~~~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g-~~VlliD~d~ 71 (207)
.+++-+++| |+..|+||||++..+-..|+. +| .+|+.+-+|-
T Consensus 47 ~grPli~gi-sGpQGSGKStls~~i~~~L~~-kg~ert~~lSLDD 89 (300)
T COG4240 47 RGRPLIVGI-SGPQGSGKSTLSALIVRLLAA-KGLERTATLSLDD 89 (300)
T ss_pred cCCceEEEe-ecCCCCchhhHHHHHHHHHHH-hcccceEEeehhh
Confidence 344445555 788999999999999999999 77 7999998875
No 332
>PRK08840 replicative DNA helicase; Provisional
Probab=95.97 E-value=0.016 Score=49.28 Aligned_cols=41 Identities=20% Similarity=0.242 Sum_probs=34.6
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCC
Q 028600 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (207)
Q Consensus 33 ~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~ 73 (207)
-+.|.++.+|.|||+++.++|...|...|++|+++-+....
T Consensus 218 ~LiviaarPg~GKTafalnia~~~a~~~~~~v~~fSlEMs~ 258 (464)
T PRK08840 218 DLIIVAARPSMGKTTFAMNLCENAAMDQDKPVLIFSLEMPA 258 (464)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHhCCCeEEEEeccCCH
Confidence 44455899999999999999999986479999999888654
No 333
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=95.96 E-value=0.015 Score=44.48 Aligned_cols=39 Identities=21% Similarity=0.183 Sum_probs=33.2
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCC
Q 028600 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (207)
Q Consensus 32 k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~ 72 (207)
+.+.+ .+..|+|||+++..++..+.+ .|.++.++++...
T Consensus 43 ~~~~l-~G~~G~GKT~La~ai~~~~~~-~~~~~~~i~~~~~ 81 (227)
T PRK08903 43 RFFYL-WGEAGSGRSHLLQALVADASY-GGRNARYLDAASP 81 (227)
T ss_pred CeEEE-ECCCCCCHHHHHHHHHHHHHh-CCCcEEEEehHHh
Confidence 34544 699999999999999999988 8999999998653
No 334
>PTZ00301 uridine kinase; Provisional
Probab=95.96 E-value=0.019 Score=43.58 Aligned_cols=42 Identities=33% Similarity=0.593 Sum_probs=31.3
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCC-eEEEEecCCCC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQL-KVGLLDADVYG 73 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~-~VlliD~d~~~ 73 (207)
..+|+| ++-+|+||||+|..|+..+....|- .|+++-.|...
T Consensus 3 ~~iIgI-aG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~yy 45 (210)
T PTZ00301 3 CTVIGI-SGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFYY 45 (210)
T ss_pred CEEEEE-ECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCCc
Confidence 367888 6788999999999999888552453 46677777654
No 335
>COG1663 LpxK Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]
Probab=95.95 E-value=0.081 Score=42.67 Aligned_cols=42 Identities=33% Similarity=0.476 Sum_probs=36.3
Q ss_pred CeEEEEEe-CCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCC
Q 028600 31 KDVIAVAS-GKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (207)
Q Consensus 31 ~k~I~v~s-~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~ 73 (207)
-.+|+|-+ +.||.|||-++..||..|.+ +|.++.++-=...+
T Consensus 47 vPVI~VGNltvGGtGKTP~vi~la~~l~~-rG~~~gvvSRGYgg 89 (336)
T COG1663 47 VPVICVGNLTVGGTGKTPVVIWLAEALQA-RGVRVGVVSRGYGG 89 (336)
T ss_pred CCEEEEccEEECCCCcCHHHHHHHHHHHh-cCCeeEEEecCcCC
Confidence 45787765 47999999999999999999 99999999777655
No 336
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=95.93 E-value=0.016 Score=44.31 Aligned_cols=41 Identities=32% Similarity=0.239 Sum_probs=34.9
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHH-HhCCCeEEEEecCCCC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALA-SKCQLKVGLLDADVYG 73 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la-~~~g~~VlliD~d~~~ 73 (207)
.+-++|. +..|+|||+++..|...+. + .|.+++++|..--.
T Consensus 23 ~~H~~I~-G~TGsGKS~~~~~ll~~l~~~-~~~~~ii~D~~GEY 64 (229)
T PF01935_consen 23 NRHIAIF-GTTGSGKSNTVKVLLEELLKK-KGAKVIIFDPHGEY 64 (229)
T ss_pred cceEEEE-CCCCCCHHHHHHHHHHHHHhc-CCCCEEEEcCCCcc
Confidence 4567775 8889999999999999999 7 99999999876533
No 337
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=95.93 E-value=0.017 Score=47.07 Aligned_cols=40 Identities=20% Similarity=0.131 Sum_probs=29.6
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHH--h---CCCeEEEEecCCC
Q 028600 33 VIAVASGKGGVGKSTTAVNLAVALAS--K---CQLKVGLLDADVY 72 (207)
Q Consensus 33 ~I~v~s~kgG~GkTt~a~~LA~~la~--~---~g~~VlliD~d~~ 72 (207)
.|....+.+|+|||+++..+|...+. . .+.+|++||+.-.
T Consensus 124 ~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~ 168 (342)
T PLN03186 124 SITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGT 168 (342)
T ss_pred eEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCC
Confidence 44444689999999999999975542 0 1248999999864
No 338
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=95.92 E-value=0.018 Score=47.98 Aligned_cols=41 Identities=27% Similarity=0.260 Sum_probs=33.9
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCC
Q 028600 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (207)
Q Consensus 30 ~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~ 72 (207)
.+-+|+| ++..|+||||++..|...+.. .|.++..|-.|-.
T Consensus 211 ~PlIIGI-sG~qGSGKSTLa~~L~~lL~~-~g~~vgvISiDDf 251 (460)
T PLN03046 211 PPLVIGF-SAPQGCGKTTLVFALDYLFRV-TGRKSATLSIDDF 251 (460)
T ss_pred CCEEEEE-ECCCCCCHHHHHHHHHHHhcc-cCCceEEEEECCc
Confidence 3567777 688899999999999998888 7889999877653
No 339
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=95.90 E-value=0.025 Score=40.81 Aligned_cols=64 Identities=11% Similarity=0.145 Sum_probs=42.6
Q ss_pred CCCCEEEEcCCCCCCcc------hhhhhhh--hcCceEEEeeCCchhhHHHHHHHHHHhhhCCCCeeEEEEcccc
Q 028600 138 GNLDILVIDMPPGTGDA------QLTTTQT--LQLSGALIVSTPQDVALIDARKGITMFSKVQVPVCSFLAQIIS 204 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~------~~~~~~~--~~~d~vi~v~~~~~~~~~~~~~~l~~l~~~~~~~~g~v~N~~~ 204 (207)
....+.++|+|+..+-. ..+...+ ...|.++.|+++.. ++.-..+..++.+.+.|+ -+++|++|
T Consensus 45 ~~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D~ii~VvDa~~--l~r~l~l~~ql~e~g~P~-vvvlN~~D 116 (156)
T PF02421_consen 45 GDQQVELVDLPGIYSLSSKSEEERVARDYLLSEKPDLIIVVVDATN--LERNLYLTLQLLELGIPV-VVVLNKMD 116 (156)
T ss_dssp TTEEEEEEE----SSSSSSSHHHHHHHHHHHHTSSSEEEEEEEGGG--HHHHHHHHHHHHHTTSSE-EEEEETHH
T ss_pred cCceEEEEECCCcccCCCCCcHHHHHHHHHhhcCCCEEEEECCCCC--HHHHHHHHHHHHHcCCCE-EEEEeCHH
Confidence 46889999999733211 1222222 36899999999986 445557788888999998 49999987
No 340
>PLN03118 Rab family protein; Provisional
Probab=95.89 E-value=0.11 Score=39.29 Aligned_cols=66 Identities=9% Similarity=0.056 Sum_probs=37.8
Q ss_pred CCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCchh-hHHHHHHHH-HHhhh----CCCCeeEEEEccccC
Q 028600 139 NLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDV-ALIDARKGI-TMFSK----VQVPVCSFLAQIISS 205 (207)
Q Consensus 139 ~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~~-~~~~~~~~l-~~l~~----~~~~~~g~v~N~~~~ 205 (207)
.+.+.|+|+|+.-.........+..+|.+++|.+.... +...+.... ..+.. .+.++ -+|.|+.|.
T Consensus 61 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~-ilv~NK~Dl 132 (211)
T PLN03118 61 RLKLTIWDTAGQERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVK-MLVGNKVDR 132 (211)
T ss_pred EEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCE-EEEEECccc
Confidence 46788999996433223333445578998888877643 444444332 22221 12343 477899874
No 341
>PF12846 AAA_10: AAA-like domain
Probab=95.89 E-value=0.015 Score=46.09 Aligned_cols=33 Identities=33% Similarity=0.366 Sum_probs=30.1
Q ss_pred EeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecC
Q 028600 37 ASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70 (207)
Q Consensus 37 ~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d 70 (207)
+.++.|+||||++.++...+.. .|.+++++|..
T Consensus 6 i~G~tGsGKT~~~~~l~~~~~~-~g~~~~i~D~~ 38 (304)
T PF12846_consen 6 ILGKTGSGKTTLLKNLLEQLIR-RGPRVVIFDPK 38 (304)
T ss_pred EECCCCCcHHHHHHHHHHHHHH-cCCCEEEEcCC
Confidence 3589999999999999999999 99999999665
No 342
>PRK08116 hypothetical protein; Validated
Probab=95.87 E-value=0.016 Score=45.69 Aligned_cols=35 Identities=23% Similarity=0.198 Sum_probs=30.5
Q ss_pred EEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecC
Q 028600 35 AVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70 (207)
Q Consensus 35 ~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d 70 (207)
.+..+..|+|||.++..+|..+.+ .|.+|+++++.
T Consensus 117 l~l~G~~GtGKThLa~aia~~l~~-~~~~v~~~~~~ 151 (268)
T PRK08116 117 LLLWGSVGTGKTYLAACIANELIE-KGVPVIFVNFP 151 (268)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH-cCCeEEEEEHH
Confidence 344678999999999999999999 89999999754
No 343
>PRK08181 transposase; Validated
Probab=95.87 E-value=0.013 Score=46.10 Aligned_cols=37 Identities=24% Similarity=0.258 Sum_probs=31.7
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecC
Q 028600 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70 (207)
Q Consensus 32 k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d 70 (207)
+-+.+ .+..|+|||.++..+|..+.+ .|++|.++.+.
T Consensus 107 ~nlll-~Gp~GtGKTHLa~Aia~~a~~-~g~~v~f~~~~ 143 (269)
T PRK08181 107 ANLLL-FGPPGGGKSHLAAAIGLALIE-NGWRVLFTRTT 143 (269)
T ss_pred ceEEE-EecCCCcHHHHHHHHHHHHHH-cCCceeeeeHH
Confidence 34555 588999999999999999999 89999999763
No 344
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=95.86 E-value=0.018 Score=41.57 Aligned_cols=66 Identities=8% Similarity=0.008 Sum_probs=44.1
Q ss_pred CCCCEEEEcCCCCCC----cchhhhhhhhcCceEEEeeCCchhhHHHHHHHHHHhhhCCCCeeEEEEccc
Q 028600 138 GNLDILVIDMPPGTG----DAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPVCSFLAQII 203 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~----~~~~~~~~~~~~d~vi~v~~~~~~~~~~~~~~l~~l~~~~~~~~g~v~N~~ 203 (207)
...+++|||+|+.-+ ........+..+|.+++|+++.......-...+.+..+......-+|+|++
T Consensus 99 ~~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nk~ 168 (168)
T PF00350_consen 99 LLRNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPDKSRTIFVLNKA 168 (168)
T ss_dssp TSCSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTTCSSEEEEEE-G
T ss_pred cccceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCCCCeEEEEEcCC
Confidence 467899999996311 113345556789999999999886554555555555555555567888874
No 345
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=95.83 E-value=0.02 Score=39.70 Aligned_cols=41 Identities=24% Similarity=0.156 Sum_probs=33.9
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~ 73 (207)
.+.+.+ .+.+|+|||+++..++..+.. .+.++..+++....
T Consensus 19 ~~~v~i-~G~~G~GKT~l~~~i~~~~~~-~~~~v~~~~~~~~~ 59 (151)
T cd00009 19 PKNLLL-YGPPGTGKTTLARAIANELFR-PGAPFLYLNASDLL 59 (151)
T ss_pred CCeEEE-ECCCCCCHHHHHHHHHHHhhc-CCCCeEEEehhhhh
Confidence 344555 689999999999999999988 89999999887544
No 346
>PRK08084 DNA replication initiation factor; Provisional
Probab=95.81 E-value=0.018 Score=44.46 Aligned_cols=38 Identities=21% Similarity=0.234 Sum_probs=32.8
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCC
Q 028600 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (207)
Q Consensus 32 k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~ 71 (207)
..+.+ .+..|+|||+++..+|..+.+ .|++|.++.++.
T Consensus 46 ~~l~l-~Gp~G~GKThLl~a~~~~~~~-~~~~v~y~~~~~ 83 (235)
T PRK08084 46 GYIYL-WSREGAGRSHLLHAACAELSQ-RGRAVGYVPLDK 83 (235)
T ss_pred CeEEE-ECCCCCCHHHHHHHHHHHHHh-CCCeEEEEEHHH
Confidence 34444 689999999999999999998 899999999975
No 347
>PRK06921 hypothetical protein; Provisional
Probab=95.81 E-value=0.018 Score=45.31 Aligned_cols=37 Identities=27% Similarity=0.257 Sum_probs=31.4
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhC-CCeEEEEec
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKC-QLKVGLLDA 69 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~-g~~VlliD~ 69 (207)
..-+.+ .+..|+|||+++..+|..+.+ + |.+|+++.+
T Consensus 117 ~~~l~l-~G~~G~GKThLa~aia~~l~~-~~g~~v~y~~~ 154 (266)
T PRK06921 117 KNSIAL-LGQPGSGKTHLLTAAANELMR-KKGVPVLYFPF 154 (266)
T ss_pred CCeEEE-ECCCCCcHHHHHHHHHHHHhh-hcCceEEEEEH
Confidence 445666 478899999999999999998 7 999999875
No 348
>PRK06321 replicative DNA helicase; Provisional
Probab=95.80 E-value=0.019 Score=48.95 Aligned_cols=42 Identities=19% Similarity=0.358 Sum_probs=34.9
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCC
Q 028600 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGP 74 (207)
Q Consensus 33 ~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~ 74 (207)
-+.+.++.+|.|||+++.++|..+|...|++|+++-+.....
T Consensus 227 ~LiiiaarPgmGKTafal~ia~~~a~~~g~~v~~fSLEMs~~ 268 (472)
T PRK06321 227 NLMILAARPAMGKTALALNIAENFCFQNRLPVGIFSLEMTVD 268 (472)
T ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHhcCCeEEEEeccCCHH
Confidence 344558999999999999999999854799999998887553
No 349
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=95.79 E-value=0.018 Score=43.91 Aligned_cols=41 Identities=17% Similarity=0.101 Sum_probs=33.8
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~ 73 (207)
.+.+.+ .+..|+|||+++..++..+-+ .|.+++.++++...
T Consensus 38 ~~~lll-~G~~G~GKT~la~~~~~~~~~-~~~~~~~i~~~~~~ 78 (226)
T TIGR03420 38 DRFLYL-WGESGSGKSHLLQAACAAAEE-RGKSAIYLPLAELA 78 (226)
T ss_pred CCeEEE-ECCCCCCHHHHHHHHHHHHHh-cCCcEEEEeHHHHH
Confidence 445666 478899999999999999888 89999999986543
No 350
>PF13173 AAA_14: AAA domain
Probab=95.78 E-value=0.019 Score=39.85 Aligned_cols=40 Identities=28% Similarity=0.327 Sum_probs=31.4
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~ 73 (207)
.+++.+ .+.-|+||||++.+++..+- ...+++.+|+|-..
T Consensus 2 ~~~~~l-~G~R~vGKTtll~~~~~~~~--~~~~~~yi~~~~~~ 41 (128)
T PF13173_consen 2 RKIIIL-TGPRGVGKTTLLKQLAKDLL--PPENILYINFDDPR 41 (128)
T ss_pred CCeEEE-ECCCCCCHHHHHHHHHHHhc--ccccceeeccCCHH
Confidence 456666 57779999999999998777 35689999988543
No 351
>PRK07933 thymidylate kinase; Validated
Probab=95.76 E-value=0.023 Score=43.23 Aligned_cols=36 Identities=33% Similarity=0.385 Sum_probs=31.4
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecC
Q 028600 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70 (207)
Q Consensus 33 ~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d 70 (207)
.|+| -+--|+||||.+..|+..|.. .|.+|.++..-
T Consensus 2 ~Ivi-EG~dGsGKST~~~~L~~~L~~-~g~~v~~~~~P 37 (213)
T PRK07933 2 LIAI-EGVDGAGKRTLTEALRAALEA-RGRSVATLAFP 37 (213)
T ss_pred EEEE-EcCCCCCHHHHHHHHHHHHHH-CCCeEEEEecC
Confidence 4666 577899999999999999999 99999998754
No 352
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=95.76 E-value=0.037 Score=44.75 Aligned_cols=41 Identities=20% Similarity=0.137 Sum_probs=30.2
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHH--hCC---CeEEEEecCCC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALAS--KCQ---LKVGLLDADVY 72 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~--~~g---~~VlliD~d~~ 72 (207)
++++.+ .+..|+|||+++..++...+. ..| .+|++||....
T Consensus 96 g~i~~i-~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~ 141 (316)
T TIGR02239 96 GSITEI-FGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGT 141 (316)
T ss_pred CeEEEE-ECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCC
Confidence 555555 689999999999999974332 123 48999998764
No 353
>PRK08118 topology modulation protein; Reviewed
Probab=95.73 E-value=0.013 Score=42.71 Aligned_cols=32 Identities=44% Similarity=0.564 Sum_probs=22.2
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEe
Q 028600 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLD 68 (207)
Q Consensus 32 k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD 68 (207)
+.|.|+ +.+|+||||+|..|+..+ |.+++-+|
T Consensus 2 ~rI~I~-G~~GsGKSTlak~L~~~l----~~~~~~lD 33 (167)
T PRK08118 2 KKIILI-GSGGSGKSTLARQLGEKL----NIPVHHLD 33 (167)
T ss_pred cEEEEE-CCCCCCHHHHHHHHHHHh----CCCceecc
Confidence 456664 789999999988888754 44544444
No 354
>PRK06217 hypothetical protein; Validated
Probab=95.73 E-value=0.012 Score=43.44 Aligned_cols=33 Identities=33% Similarity=0.455 Sum_probs=24.6
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCC
Q 028600 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (207)
Q Consensus 32 k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~ 71 (207)
+.|.| .+.+|+||||++..||..+ |.+ .+|+|.
T Consensus 2 ~~I~i-~G~~GsGKSTla~~L~~~l----~~~--~~~~D~ 34 (183)
T PRK06217 2 MRIHI-TGASGSGTTTLGAALAERL----DIP--HLDTDD 34 (183)
T ss_pred eEEEE-ECCCCCCHHHHHHHHHHHc----CCc--EEEcCc
Confidence 34666 4789999999999999754 444 677774
No 355
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=95.73 E-value=0.14 Score=38.16 Aligned_cols=40 Identities=28% Similarity=0.376 Sum_probs=35.2
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~ 73 (207)
+..|.| ++..|+|||++...+-..|.. . +++.+|.-|...
T Consensus 13 ~~~i~v-~Gp~GSGKTaLie~~~~~L~~-~-~~~aVI~~Di~t 52 (202)
T COG0378 13 MLRIGV-GGPPGSGKTALIEKTLRALKD-E-YKIAVITGDIYT 52 (202)
T ss_pred eEEEEe-cCCCCcCHHHHHHHHHHHHHh-h-CCeEEEeceeec
Confidence 478888 578899999999999999999 5 999999988866
No 356
>PRK05380 pyrG CTP synthetase; Validated
Probab=95.73 E-value=0.38 Score=41.49 Aligned_cols=168 Identities=14% Similarity=0.155 Sum_probs=89.7
Q ss_pred CeEEEEE-eCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccccC-----------Ccccc--cccccee
Q 028600 31 KDVIAVA-SGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQ-----------KPEVT--KDMKMVP 96 (207)
Q Consensus 31 ~k~I~v~-s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~~-----------~~~~~--~~~~~~~ 96 (207)
+|-|.|+ +--.|.||-.+++.++..|-. +|.+|..+-+||+-+-=+-.+..-. +..++ ..+....
T Consensus 2 ~k~ifvtGgv~S~lGKGi~~as~g~ll~~-~g~~v~~~K~DpYlNvd~GtmsP~~HGEvfVt~DG~EtDlDlG~YERf~~ 80 (533)
T PRK05380 2 TKYIFVTGGVVSSLGKGITAASLGRLLKA-RGLKVTIQKLDPYINVDPGTMSPYQHGEVFVTDDGAETDLDLGHYERFID 80 (533)
T ss_pred ceEEEEcCCcccCcchHHHHHHHHHHHHh-CCCceEEEeeccccccCCCCCCCccceeEEEccCCCcccccccchhhhcC
Confidence 4545554 456899999999999999999 9999999999996521111111110 00000 0000000
Q ss_pred cccccceeec-------------ccccCCCCCcccccchhhHHHHHHHHHhcccCCCCEEEEcCCCCCCcchh--hhhhh
Q 028600 97 IENYGVKCMS-------------MGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQL--TTTQT 161 (207)
Q Consensus 97 ~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~D~IiiD~~~~~~~~~~--~~~~~ 161 (207)
..-..-..+. .|..+... ..--+-..+.+++.+..+. ..+|++|+..+++.+|-.- -+.++
T Consensus 81 ~~l~~~~n~TtG~iy~~vi~kER~G~ylG~t---vQviPHit~eI~~~i~~~~-~~~dv~i~EiGGTvGDiEs~pf~ea~ 156 (533)
T PRK05380 81 TNLTKYNNVTTGKIYSSVIEKERRGDYLGKT---VQVIPHITDEIKERILAAG-TDADVVIVEIGGTVGDIESLPFLEAI 156 (533)
T ss_pred CCCccccccchHHHHHHHHHHhhccCccCce---EEEccCccHHHHHHHHhcC-CCCCEEEEEeCCccccccccHHHHHH
Confidence 0000000000 01001100 0001122467788888877 8999999999987664321 12222
Q ss_pred h--------------cCceEEEeeCCchhhHHHHHHHHHHhhhCCCCeeEEEEcccc
Q 028600 162 L--------------QLSGALIVSTPQDVALIDARKGITMFSKVQVPVCSFLAQIIS 204 (207)
Q Consensus 162 ~--------------~~d~vi~v~~~~~~~~~~~~~~l~~l~~~~~~~~g~v~N~~~ 204 (207)
+ +...|-.+-..+...-.-++..++.|+..|++.- +|+=|.+
T Consensus 157 rq~~~~~g~~n~~~ih~t~vp~~~~~~E~KtKPtQhsv~~lr~~Gi~pd-~i~~R~~ 212 (533)
T PRK05380 157 RQLRLELGRENVLFIHLTLVPYIAAAGELKTKPTQHSVKELRSIGIQPD-ILVCRSE 212 (533)
T ss_pred HHHHHhhCCCcEEEEEEeccceecCCCcccCCchHHHHHHHHhCCCCCC-EEEEecC
Confidence 2 1112222223455556777888999999998873 4444444
No 357
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=95.72 E-value=0.037 Score=40.30 Aligned_cols=67 Identities=10% Similarity=0.043 Sum_probs=41.7
Q ss_pred CCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCchhhHHHHHHHHHHhhhCCCCeeEEEEccccC
Q 028600 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~~~~~~~~~~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
..+.+.++|||+..............+|.+++|++....-.......+..+...+.++ -+|+||.|.
T Consensus 65 ~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~~~~~i-iiv~NK~Dl 131 (179)
T cd01890 65 QEYLLNLIDTPGHVDFSYEVSRSLAACEGALLLVDATQGVEAQTLANFYLALENNLEI-IPVINKIDL 131 (179)
T ss_pred CcEEEEEEECCCChhhHHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHHcCCCE-EEEEECCCC
Confidence 5678899999964332233344455799999999886532122223333344456665 589999984
No 358
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=95.69 E-value=0.019 Score=43.23 Aligned_cols=66 Identities=9% Similarity=0.096 Sum_probs=41.3
Q ss_pred CCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCchh-hHHHHHHHHHHhhhCCCCeeEEEEccccC
Q 028600 140 LDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDV-ALIDARKGITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 140 ~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~~-~~~~~~~~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
+-+.++|+|+...-.......+..+|.+++|++.... ........+..+...+.+.+-+++||.|.
T Consensus 83 ~~i~~iDtPG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~~~iiivvNK~Dl 149 (203)
T cd01888 83 RHVSFVDCPGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQNKIDL 149 (203)
T ss_pred cEEEEEECCChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcCCCcEEEEEEchhc
Confidence 6789999996322112224444467999999998752 22233445555555666544589999884
No 359
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=95.68 E-value=0.018 Score=43.69 Aligned_cols=41 Identities=32% Similarity=0.403 Sum_probs=33.2
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPS 75 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~ 75 (207)
..+|+| ++-+|+||||+|..|...+.. . ++.+|-.|-..-+
T Consensus 8 ~iiIgI-aG~SgSGKTTva~~l~~~~~~-~--~~~~I~~D~YYk~ 48 (218)
T COG0572 8 VIIIGI-AGGSGSGKTTVAKELSEQLGV-E--KVVVISLDDYYKD 48 (218)
T ss_pred eEEEEE-eCCCCCCHHHHHHHHHHHhCc-C--cceEeeccccccc
Confidence 467888 577889999999999998876 3 8999988876543
No 360
>PRK05636 replicative DNA helicase; Provisional
Probab=95.67 E-value=0.025 Score=48.68 Aligned_cols=41 Identities=20% Similarity=0.289 Sum_probs=34.1
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCC
Q 028600 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (207)
Q Consensus 33 ~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~ 73 (207)
-+.+.++.+|.|||+++.++|...|...|++|+++.+....
T Consensus 266 ~Liiiaarpg~GKT~~al~~a~~~a~~~g~~v~~fSlEMs~ 306 (505)
T PRK05636 266 QMIIVAARPGVGKSTLALDFMRSASIKHNKASVIFSLEMSK 306 (505)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEeeCCH
Confidence 34455899999999999999999885379999999887754
No 361
>PLN02796 D-glycerate 3-kinase
Probab=95.64 E-value=0.025 Score=45.99 Aligned_cols=39 Identities=26% Similarity=0.293 Sum_probs=32.1
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~ 71 (207)
+-+|+| ++..|+||||++..|+..+.. .|.++..|-.|-
T Consensus 100 pliIGI-~G~sGSGKSTLa~~L~~lL~~-~g~~~g~IsiDd 138 (347)
T PLN02796 100 PLVIGI-SAPQGCGKTTLVFALVYLFNA-TGRRAASLSIDD 138 (347)
T ss_pred CEEEEE-ECCCCCcHHHHHHHHHHHhcc-cCCceeEEEECC
Confidence 456777 588999999999999999988 788887776653
No 362
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=95.63 E-value=0.026 Score=48.39 Aligned_cols=42 Identities=14% Similarity=0.079 Sum_probs=34.6
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~ 73 (207)
++++.| .+.+|+||||++.+++..-++..|.++++|.++-..
T Consensus 21 g~~~Li-~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE~~ 62 (484)
T TIGR02655 21 GRSTLV-SGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEESP 62 (484)
T ss_pred CeEEEE-EcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEecCH
Confidence 566766 689999999999999998777239999999987533
No 363
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=95.61 E-value=0.015 Score=44.17 Aligned_cols=34 Identities=29% Similarity=0.417 Sum_probs=26.4
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHH--------HHhCCCeEEEEe
Q 028600 34 IAVASGKGGVGKSTTAVNLAVAL--------ASKCQLKVGLLD 68 (207)
Q Consensus 34 I~v~s~kgG~GkTt~a~~LA~~l--------a~~~g~~VlliD 68 (207)
+++..+-+|+|||++.+.+...+ .. .+.+++++-
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~-~~~~il~~~ 60 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQLLQRFKSRSAD-RGKKILVVS 60 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH-------HCC-CSS-EEEEE
T ss_pred CEEEECCCCCChHHHHHHHHHHhccchhhhhhh-ccccceeec
Confidence 67778999999999999999988 45 788888873
No 364
>PLN02348 phosphoribulokinase
Probab=95.61 E-value=0.033 Score=46.08 Aligned_cols=42 Identities=24% Similarity=0.263 Sum_probs=33.4
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCC---------------CeEEEEecCCCC
Q 028600 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQ---------------LKVGLLDADVYG 73 (207)
Q Consensus 30 ~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g---------------~~VlliD~d~~~ 73 (207)
..-+|+| ++-.|+||||++..|+..|.. .+ ..+.+|.+|-..
T Consensus 48 ~p~IIGI-aG~SGSGKSTfA~~L~~~Lg~-~~~~~~~~~~~~~~l~~~~~~VI~lDDYh 104 (395)
T PLN02348 48 GTVVIGL-AADSGCGKSTFMRRLTSVFGG-AAKPPKGGNPDSNTLISDTTTVICLDDYH 104 (395)
T ss_pred CCEEEEE-ECCCCCCHHHHHHHHHHHHhh-ccCCCccccccccccccCceEEEEccccc
Confidence 3567777 688999999999999999976 42 468888888543
No 365
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=95.60 E-value=0.02 Score=46.01 Aligned_cols=41 Identities=24% Similarity=0.250 Sum_probs=31.3
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHh-----CCCeEEEEecCCC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASK-----CQLKVGLLDADVY 72 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~-----~g~~VlliD~d~~ 72 (207)
++++-| .+.+|+|||+++..+|...+.. .+.+|++||++-.
T Consensus 95 g~i~ei-~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~ 140 (310)
T TIGR02236 95 QAITEV-FGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENT 140 (310)
T ss_pred CeEEEE-ECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCC
Confidence 455555 6899999999999999887630 1239999999863
No 366
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=95.57 E-value=0.017 Score=39.84 Aligned_cols=40 Identities=30% Similarity=0.253 Sum_probs=29.9
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHhC-----CCeEEEEecCCCC
Q 028600 33 VIAVASGKGGVGKSTTAVNLAVALASKC-----QLKVGLLDADVYG 73 (207)
Q Consensus 33 ~I~v~s~kgG~GkTt~a~~LA~~la~~~-----g~~VlliD~d~~~ 73 (207)
.+.+..+..|+|||+++.+++..+.. . ..+++.+++....
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 49 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQLNA-EAEIKNHPDVIYVNCPSSR 49 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHHHHH-HHHHCCCEEEEEEEHHHHS
T ss_pred cccEEEcCCCCCHHHHHHHHHHHhHH-hhhccCCCcEEEEEeCCCC
Confidence 34555799999999999999999987 4 6778877776544
No 367
>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]
Probab=95.55 E-value=0.018 Score=42.92 Aligned_cols=48 Identities=8% Similarity=0.178 Sum_probs=31.8
Q ss_pred hhHHHHHHHHHhcccCCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCchh
Q 028600 123 MVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDV 176 (207)
Q Consensus 123 ~~~~~l~~~~~~l~~~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~~ 176 (207)
...+.++++...+. .+|.+|++|.|=.++ .-.+..+..+|+|+-....
T Consensus 91 Ir~em~ke~~~~~l-~G~r~ivlDiPLLFE-----~~~~~~~~~tvvV~cd~~~ 138 (225)
T KOG3220|consen 91 IRKEMFKEILKLLL-RGYRVIVLDIPLLFE-----AKLLKICHKTVVVTCDEEL 138 (225)
T ss_pred HHHHHHHHHHHHHh-cCCeEEEEechHHHH-----HhHHhheeeEEEEEECcHH
Confidence 34567778888888 999999999994333 2223356666666555443
No 368
>PRK07004 replicative DNA helicase; Provisional
Probab=95.54 E-value=0.026 Score=48.03 Aligned_cols=41 Identities=20% Similarity=0.433 Sum_probs=34.4
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCC
Q 028600 34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGP 74 (207)
Q Consensus 34 I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~ 74 (207)
+.+.++.+|.|||+++.++|...|...|++|+++-+.....
T Consensus 215 liviaarpg~GKT~~al~ia~~~a~~~~~~v~~fSlEM~~~ 255 (460)
T PRK07004 215 LIIVAGRPSMGKTAFSMNIGEYVAVEYGLPVAVFSMEMPGT 255 (460)
T ss_pred eEEEEeCCCCCccHHHHHHHHHHHHHcCCeEEEEeCCCCHH
Confidence 44458999999999999999998854799999998877553
No 369
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=95.50 E-value=0.029 Score=42.10 Aligned_cols=36 Identities=33% Similarity=0.338 Sum_probs=28.4
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEec
Q 028600 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDA 69 (207)
Q Consensus 32 k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~ 69 (207)
++..+ .+.+|+||||+...++..+.. .|.+|+++-.
T Consensus 19 ~~~~l-~G~aGtGKT~~l~~~~~~~~~-~g~~v~~~ap 54 (196)
T PF13604_consen 19 RVSVL-QGPAGTGKTTLLKALAEALEA-AGKRVIGLAP 54 (196)
T ss_dssp SEEEE-EESTTSTHHHHHHHHHHHHHH-TT--EEEEES
T ss_pred eEEEE-EECCCCCHHHHHHHHHHHHHh-CCCeEEEECC
Confidence 34444 677999999999999999999 8999999843
No 370
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=95.50 E-value=0.018 Score=48.24 Aligned_cols=68 Identities=12% Similarity=0.086 Sum_probs=46.5
Q ss_pred CCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCchhhHHHHHHHHHHhhhCCCCeeEEEEccccC
Q 028600 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~~~~~~~~~~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
+++.+.++|+|+--.-.......+..+|.+++|+++...-.....+.+..+...+.+.+-+++||+|.
T Consensus 78 ~~~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~~~~~iivviNK~D~ 145 (406)
T TIGR02034 78 DKRKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLLGIRHVVLAVNKMDL 145 (406)
T ss_pred CCeEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHcCCCcEEEEEEeccc
Confidence 45688999999621111123445668999999999876555556666666667677655689999885
No 371
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=95.50 E-value=0.042 Score=40.81 Aligned_cols=67 Identities=12% Similarity=0.067 Sum_probs=40.1
Q ss_pred CCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCchhhHHHHHHHHHHhhhCCCCeeEEEEccccC
Q 028600 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~~~~~~~~~~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
+.+.+.++|+|+...-..........+|.+++|+++.........+.+......+.++ -+++||.|.
T Consensus 66 ~~~~~~i~DtpG~~~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~~~~~~-iiv~NK~Dl 132 (192)
T cd01889 66 ENLQITLVDCPGHASLIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEILCKKL-IVVLNKIDL 132 (192)
T ss_pred cCceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHHcCCCE-EEEEECccc
Confidence 5789999999963211111123334578999999886532222223333444456665 489999884
No 372
>TIGR00337 PyrG CTP synthase. CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7).
Probab=95.48 E-value=0.38 Score=41.45 Aligned_cols=41 Identities=29% Similarity=0.336 Sum_probs=34.6
Q ss_pred eEEEEE-eCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCC
Q 028600 32 DVIAVA-SGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (207)
Q Consensus 32 k~I~v~-s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~ 73 (207)
|-|.|+ +-..|.||-.+++.++..|-. .|.+|..+-+||+-
T Consensus 2 k~i~vtGgv~s~lgkgi~~as~g~ll~~-~g~~v~~~K~DpYl 43 (525)
T TIGR00337 2 KYIFVTGGVVSSLGKGITAASIGRLLKA-RGLKVTIIKIDPYI 43 (525)
T ss_pred cEEEEcCCcccCcchHHHHHHHHHHHHh-CCCceEEEeecccc
Confidence 334444 456899999999999999999 99999999999965
No 373
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=95.48 E-value=0.035 Score=40.67 Aligned_cols=29 Identities=31% Similarity=0.432 Sum_probs=22.5
Q ss_pred CCCCcHHHHHHHHHHHHHHhCCCeEEEEec
Q 028600 40 KGGVGKSTTAVNLAVALASKCQLKVGLLDA 69 (207)
Q Consensus 40 kgG~GkTt~a~~LA~~la~~~g~~VlliD~ 69 (207)
-.|=||||-|..+|.-.+- .|+||+++=+
T Consensus 11 G~GKGKTTAAlGlalRA~G-~G~rV~ivQF 39 (172)
T PF02572_consen 11 GDGKGKTTAALGLALRAAG-HGMRVLIVQF 39 (172)
T ss_dssp SSSS-HHHHHHHHHHHHHC-TT--EEEEES
T ss_pred CCCCCchHHHHHHHHHHHh-CCCEEEEEEE
Confidence 3466999999999999999 9999999954
No 374
>PRK00131 aroK shikimate kinase; Reviewed
Probab=95.47 E-value=0.017 Score=41.92 Aligned_cols=34 Identities=35% Similarity=0.354 Sum_probs=25.2
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~ 71 (207)
++.|.+ .+.+|+||||++..||..+ |. .++|.|.
T Consensus 4 ~~~i~l-~G~~GsGKstla~~La~~l----~~--~~~d~d~ 37 (175)
T PRK00131 4 GPNIVL-IGFMGAGKSTIGRLLAKRL----GY--DFIDTDH 37 (175)
T ss_pred CCeEEE-EcCCCCCHHHHHHHHHHHh----CC--CEEEChH
Confidence 455666 5899999999999999876 32 4556653
No 375
>PLN02759 Formate--tetrahydrofolate ligase
Probab=95.45 E-value=0.031 Score=48.23 Aligned_cols=52 Identities=31% Similarity=0.224 Sum_probs=42.4
Q ss_pred CCeEEEEEe---CCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccccC
Q 028600 30 VKDVIAVAS---GKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQ 84 (207)
Q Consensus 30 ~~k~I~v~s---~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~~ 84 (207)
.+|.|.|++ +.-|.||||++..|+.+|.+..|+++++. .+.||+--.||.+.
T Consensus 68 ~gklIlVTaitPTP~GEGKTTttIGL~~aL~~~lgk~~~~~---lRePSlGP~FGiKG 122 (637)
T PLN02759 68 DGYYVVVAGITPTPLGEGKSTTTIGLCQALGAYLDKKVVTC---LRQPSQGPTFGIKG 122 (637)
T ss_pred CCcEEEEEecCCCCCCCCchhHHHHHHHHHHHHhCCeeEEE---eecCCcCCcCCccc
Confidence 478777765 56799999999999999996589999874 77888888887764
No 376
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=95.44 E-value=0.028 Score=42.28 Aligned_cols=33 Identities=36% Similarity=0.302 Sum_probs=25.3
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~ 71 (207)
|++|+++ +..|+||||++..|+. .|. .++|+|-
T Consensus 1 m~~igit-G~igsGKst~~~~l~~-----~g~--~vid~D~ 33 (200)
T PRK14734 1 MLRIGLT-GGIGSGKSTVADLLSS-----EGF--LIVDADQ 33 (200)
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHH-----CCC--eEEeCcH
Confidence 3578886 7788999999998873 565 4688873
No 377
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=95.40 E-value=0.16 Score=36.03 Aligned_cols=19 Identities=47% Similarity=0.630 Sum_probs=15.3
Q ss_pred EEEEeCCCCCcHHHHHHHHH
Q 028600 34 IAVASGKGGVGKSTTAVNLA 53 (207)
Q Consensus 34 I~v~s~kgG~GkTt~a~~LA 53 (207)
|+++ +..|+||||+.-.|+
T Consensus 2 i~l~-G~~g~GKTtL~~~l~ 20 (170)
T cd01876 2 IAFA-GRSNVGKSSLINALT 20 (170)
T ss_pred EEEE-cCCCCCHHHHHHHHh
Confidence 3443 778899999999887
No 378
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=95.35 E-value=0.046 Score=42.81 Aligned_cols=41 Identities=34% Similarity=0.375 Sum_probs=34.1
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCe--EEEEecCCCC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLK--VGLLDADVYG 73 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~--VlliD~d~~~ 73 (207)
+=+|++ ++..|+||||+|..|+..+++ .+.. |-+|-+|--.
T Consensus 82 pfIIgi-aGsvavGKST~ar~L~~ll~~-~~~~~~v~lvpmDGFh 124 (283)
T COG1072 82 PFIIGI-AGSVAVGKSTTARILQALLSR-WPESPKVDLVTMDGFH 124 (283)
T ss_pred CEEEEe-ccCccccHHHHHHHHHHHHhh-CCCCCceEEEeccccc
Confidence 456666 688999999999999999999 7766 8888888533
No 379
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=95.34 E-value=0.027 Score=46.22 Aligned_cols=39 Identities=31% Similarity=0.360 Sum_probs=31.9
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHH--HHhCCCeEEEEecCC
Q 028600 32 DVIAVASGKGGVGKSTTAVNLAVAL--ASKCQLKVGLLDADV 71 (207)
Q Consensus 32 k~I~v~s~kgG~GkTt~a~~LA~~l--a~~~g~~VlliD~d~ 71 (207)
|.+.+..+.+|+|||.++.+||..+ .. .+.+++++.-+.
T Consensus 1 K~v~~I~G~aGTGKTvla~~l~~~l~~~~-~~~~~~~l~~n~ 41 (352)
T PF09848_consen 1 KQVILITGGAGTGKTVLALNLAKELQNSE-EGKKVLYLCGNH 41 (352)
T ss_pred CeEEEEEecCCcCHHHHHHHHHHHhhccc-cCCceEEEEecc
Confidence 3456668999999999999999999 77 788888775553
No 380
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=95.34 E-value=0.0072 Score=47.32 Aligned_cols=42 Identities=24% Similarity=0.296 Sum_probs=32.9
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHh-----CCCeEEEEecCCCC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASK-----CQLKVGLLDADVYG 73 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~-----~g~~VlliD~d~~~ 73 (207)
+.++-++ +.+|+|||.++..||.....- .+.+|++||.+-..
T Consensus 38 g~itEi~-G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f 84 (256)
T PF08423_consen 38 GSITEIV-GESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTF 84 (256)
T ss_dssp TSEEEEE-ESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS
T ss_pred CcEEEEE-EecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCC
Confidence 5677774 788999999999999765420 36799999998754
No 381
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=95.29 E-value=0.031 Score=49.70 Aligned_cols=67 Identities=16% Similarity=0.145 Sum_probs=56.3
Q ss_pred CCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCchhhHHHHHHHHHHhhhCCCCeeEEEEccccCC
Q 028600 139 NLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPVCSFLAQIISSM 206 (207)
Q Consensus 139 ~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~~~~~~~~~~l~~l~~~~~~~~g~v~N~~~~~ 206 (207)
.|.+-+||||+-.+...-...+++.+|+.++|+++...-..++...+.+..+.+++.+ +.+||+|+.
T Consensus 75 ~~~iNlIDTPGHVDFt~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~~vp~i-~fiNKmDR~ 141 (697)
T COG0480 75 DYRINLIDTPGHVDFTIEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADKYGVPRI-LFVNKMDRL 141 (697)
T ss_pred ceEEEEeCCCCccccHHHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhhcCCCeE-EEEECcccc
Confidence 4889999999755443444567778999999999999888999999999999999985 889999863
No 382
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=95.29 E-value=0.04 Score=47.52 Aligned_cols=40 Identities=28% Similarity=0.269 Sum_probs=35.2
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~ 72 (207)
+.++.| .+..|+|||+++.+++...++ .|.+|++|.++-.
T Consensus 273 g~~~li-~G~~G~GKT~l~~~~~~~~~~-~g~~~~yis~e~~ 312 (509)
T PRK09302 273 GSIILV-SGATGTGKTLLASKFAEAACR-RGERCLLFAFEES 312 (509)
T ss_pred CcEEEE-EcCCCCCHHHHHHHHHHHHHh-CCCcEEEEEecCC
Confidence 566777 578999999999999999999 9999999988754
No 383
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=95.28 E-value=0.023 Score=42.77 Aligned_cols=36 Identities=36% Similarity=0.376 Sum_probs=26.3
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCC
Q 028600 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (207)
Q Consensus 30 ~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~ 73 (207)
++.+|++| ++.|+||||++--++. .|. .+||+|--.
T Consensus 1 ~~~iIglT-G~igsGKStva~~~~~-----~G~--~vidaD~v~ 36 (201)
T COG0237 1 MMLIIGLT-GGIGSGKSTVAKILAE-----LGF--PVIDADDVA 36 (201)
T ss_pred CceEEEEe-cCCCCCHHHHHHHHHH-----cCC--eEEEccHHH
Confidence 47899996 8899999998766554 454 456777533
No 384
>PRK00698 tmk thymidylate kinase; Validated
Probab=95.26 E-value=0.048 Score=40.77 Aligned_cols=35 Identities=29% Similarity=0.232 Sum_probs=29.6
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEE
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLL 67 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~Vlli 67 (207)
++.|+|. +-.|+||||++..|+..+.. .|..+.+.
T Consensus 3 ~~~I~ie-G~~gsGKsT~~~~L~~~l~~-~~~~~~~~ 37 (205)
T PRK00698 3 GMFITIE-GIDGAGKSTQIELLKELLEQ-QGRDVVFT 37 (205)
T ss_pred ceEEEEE-CCCCCCHHHHHHHHHHHHHH-cCCceeEe
Confidence 5788885 88899999999999999988 88776654
No 385
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=95.24 E-value=0.032 Score=45.08 Aligned_cols=40 Identities=23% Similarity=0.248 Sum_probs=31.9
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhC------CCeEEEEecCCC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKC------QLKVGLLDADVY 72 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~------g~~VlliD~d~~ 72 (207)
+.++-| .+.+|+|||+++.++|...+. . +.+|++||++-.
T Consensus 102 g~vtei-~G~~GsGKT~l~~~~~~~~~~-~~~~gg~~~~~~yi~te~~ 147 (317)
T PRK04301 102 QSITEF-YGEFGSGKTQICHQLAVNVQL-PEEKGGLEGKAVYIDTEGT 147 (317)
T ss_pred CcEEEE-ECCCCCCHhHHHHHHHHHhcc-ccccCCCCceEEEEeCCCC
Confidence 455555 689999999999999988765 3 359999999863
No 386
>PRK01906 tetraacyldisaccharide 4'-kinase; Provisional
Probab=95.24 E-value=0.026 Score=45.95 Aligned_cols=42 Identities=26% Similarity=0.396 Sum_probs=36.2
Q ss_pred CeEEEEEe-CCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCC
Q 028600 31 KDVIAVAS-GKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (207)
Q Consensus 31 ~k~I~v~s-~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~ 73 (207)
-++|+|-+ +.||+|||-++..||..|.+ +|++|.+|-=...+
T Consensus 56 vPVIsVGNitvGGTGKTP~v~~La~~l~~-~G~~~~IlSRGYg~ 98 (338)
T PRK01906 56 VPVVVVGNVTVGGTGKTPTVIALVDALRA-AGFTPGVVSRGYGA 98 (338)
T ss_pred CCEEEECCccCCCCChHHHHHHHHHHHHH-cCCceEEEecCCCC
Confidence 56888866 57999999999999999999 99999999766544
No 387
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=95.23 E-value=0.36 Score=40.90 Aligned_cols=40 Identities=33% Similarity=0.311 Sum_probs=33.8
Q ss_pred EEEEE-eCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCC
Q 028600 33 VIAVA-SGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (207)
Q Consensus 33 ~I~v~-s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~ 73 (207)
-|.|+ +--.|.||-.+|+.||..|.. +|.+|..+-+||+-
T Consensus 3 yIfVTGGVvSslGKGi~aaSlg~lLk~-rG~~Vt~~KlDPYl 43 (533)
T COG0504 3 YIFVTGGVVSSLGKGITAASLGRLLKA-RGLKVTIQKLDPYL 43 (533)
T ss_pred EEEEeCCeecccccHHHHHHHHHHHHH-CCceEEEEecccce
Confidence 34444 346789999999999999999 99999999999854
No 388
>PF05729 NACHT: NACHT domain
Probab=95.22 E-value=0.026 Score=40.44 Aligned_cols=26 Identities=42% Similarity=0.389 Sum_probs=22.7
Q ss_pred EEEeCCCCCcHHHHHHHHHHHHHHhCC
Q 028600 35 AVASGKGGVGKSTTAVNLAVALASKCQ 61 (207)
Q Consensus 35 ~v~s~kgG~GkTt~a~~LA~~la~~~g 61 (207)
.+..+.+|+||||++..++..+++ .+
T Consensus 3 l~I~G~~G~GKStll~~~~~~~~~-~~ 28 (166)
T PF05729_consen 3 LWISGEPGSGKSTLLRKLAQQLAE-EE 28 (166)
T ss_pred EEEECCCCCChHHHHHHHHHHHHh-cC
Confidence 344799999999999999999999 55
No 389
>PRK13973 thymidylate kinase; Provisional
Probab=95.22 E-value=0.058 Score=40.96 Aligned_cols=35 Identities=31% Similarity=0.302 Sum_probs=31.1
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEE
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLL 67 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~Vlli 67 (207)
++.|+| =+-.|+||||.+..|+..|.. .|.+|...
T Consensus 3 g~~Ivi-EG~dGsGKtTq~~~l~~~l~~-~g~~~~~~ 37 (213)
T PRK13973 3 GRFITF-EGGEGAGKSTQIRLLAERLRA-AGYDVLVT 37 (213)
T ss_pred ceEEEE-EcCCCCCHHHHHHHHHHHHHH-CCCeEEEE
Confidence 578888 577899999999999999999 99999766
No 390
>PLN02327 CTP synthase
Probab=95.21 E-value=0.48 Score=41.02 Aligned_cols=41 Identities=32% Similarity=0.496 Sum_probs=34.6
Q ss_pred eEEEEE-eCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCC
Q 028600 32 DVIAVA-SGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (207)
Q Consensus 32 k~I~v~-s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~ 73 (207)
|-|.|+ +--.|.||-.+++.|+..|-. +|.+|..+-+||+-
T Consensus 2 k~ifvtGGV~S~lGKGi~~aSig~ll~~-~g~~V~~~K~DPYl 43 (557)
T PLN02327 2 KYVLVTGGVVSGLGKGVTASSIGVLLKA-CGLRVTSIKIDPYL 43 (557)
T ss_pred cEEEEcCCcccCcchHHHHHHHHHHHHH-CCCceeeeeccccc
Confidence 444444 446899999999999999999 99999999999965
No 391
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=95.19 E-value=0.027 Score=42.28 Aligned_cols=40 Identities=30% Similarity=0.415 Sum_probs=28.1
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~ 73 (207)
.+++.++.+.+|+||||++..+-..+. +...+.||.|.-.
T Consensus 14 ~P~~~i~aG~~GsGKSt~~~~~~~~~~---~~~~v~i~~D~~r 53 (199)
T PF06414_consen 14 KPTLIIIAGQPGSGKSTLARQLLEEFG---GGGIVVIDADEFR 53 (199)
T ss_dssp S-EEEEEES-TTSTTHHHHHHHHHHT----TT-SEEE-GGGGG
T ss_pred CCEEEEEeCCCCCCHHHHHHHhhhhcc---CCCeEEEehHHHH
Confidence 456667789999999999998876553 5678999998744
No 392
>PRK06851 hypothetical protein; Provisional
Probab=95.18 E-value=0.077 Score=43.68 Aligned_cols=47 Identities=26% Similarity=0.301 Sum_probs=37.5
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCcccc
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMM 79 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~ 79 (207)
.+++.+ .+.+|+||||+...++..+.+ +|.+|.+.=|-..-.++...
T Consensus 214 ~~~~~i-~G~pG~GKstl~~~i~~~a~~-~G~~v~~~hC~~dPdslD~v 260 (367)
T PRK06851 214 KNRYFL-KGRPGTGKSTMLKKIAKAAEE-RGFDVEVYHCGFDPDSLDMV 260 (367)
T ss_pred ceEEEE-eCCCCCcHHHHHHHHHHHHHh-CCCeEEEEeCCCCCCCcceE
Confidence 445555 789999999999999999999 99999999776655454433
No 393
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=95.17 E-value=0.04 Score=48.83 Aligned_cols=46 Identities=26% Similarity=0.213 Sum_probs=38.4
Q ss_pred CCCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCc
Q 028600 29 GVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSV 76 (207)
Q Consensus 29 ~~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l 76 (207)
.++++|.+ .+..|+||||+|..|+..|.. .|..+.++|-|.-...+
T Consensus 458 ~~~~~i~~-~G~~gsGKst~a~~l~~~l~~-~~~~~~~l~~D~~r~~l 503 (632)
T PRK05506 458 QKPATVWF-TGLSGSGKSTIANLVERRLHA-LGRHTYLLDGDNVRHGL 503 (632)
T ss_pred CCcEEEEe-cCCCCchHHHHHHHHHHHHHH-cCCCEEEEcChhhhhcc
Confidence 34677777 588999999999999999998 89999999998765444
No 394
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=95.17 E-value=0.033 Score=47.57 Aligned_cols=67 Identities=9% Similarity=0.066 Sum_probs=43.6
Q ss_pred CCCCEEEEcCCCCCCcc-hhhhhhhhcCceEEEeeCCchhhHHHHHHHHHHhhhCCCCeeEEEEccccC
Q 028600 138 GNLDILVIDMPPGTGDA-QLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~-~~~~~~~~~~d~vi~v~~~~~~~~~~~~~~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
+++.++++|||+ .... ......+..+|.+++|+++...-.....+.+..+...+.+.+-+++||+|.
T Consensus 105 ~~~~i~~iDTPG-h~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~lg~~~iIvvvNKiD~ 172 (474)
T PRK05124 105 EKRKFIIADTPG-HEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLLGIKHLVVAVNKMDL 172 (474)
T ss_pred CCcEEEEEECCC-cHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHHhCCCceEEEEEeecc
Confidence 567899999996 2211 122344567899999998876433444445555555566555689999884
No 395
>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2.7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.
Probab=95.16 E-value=0.011 Score=43.64 Aligned_cols=50 Identities=12% Similarity=0.286 Sum_probs=28.5
Q ss_pred HHHHHHHHhcccCCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCchhhHHHHH
Q 028600 126 SALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDAR 182 (207)
Q Consensus 126 ~~l~~~~~~l~~~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~~~~~~~~ 182 (207)
..+.+.+...+ .. .++++|.|--+. ..+ . ..+|.+++|..+....+..+.
T Consensus 92 ~~~~~~~~~~~-~~-~~~v~e~pLL~E-~~~--~--~~~D~vi~V~a~~e~ri~Rl~ 141 (180)
T PF01121_consen 92 EEIEKFIKRNK-SE-KVVVVEIPLLFE-SGL--E--KLCDEVIVVYAPEEIRIKRLM 141 (180)
T ss_dssp HHHHHHHHHCH-ST-SEEEEE-TTTTT-TTG--G--GGSSEEEEEE--HHHHHHHHH
T ss_pred HHHHHHHHhcc-CC-CEEEEEcchhhh-hhH--h--hhhceEEEEECCHHHHHHHHH
Confidence 33444444443 23 899999995444 222 2 258999999988776555443
No 396
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=95.11 E-value=0.049 Score=47.56 Aligned_cols=44 Identities=36% Similarity=0.335 Sum_probs=36.0
Q ss_pred CCCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCC
Q 028600 29 GVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (207)
Q Consensus 29 ~~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~ 73 (207)
+.+.+|.+ .+..|+||||++..||..+....|.++.++|.|.-.
T Consensus 390 ~~g~~Ivl-~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D~vr 433 (568)
T PRK05537 390 KQGFTVFF-TGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGDVVR 433 (568)
T ss_pred CCCeEEEE-ECCCCChHHHHHHHHHHHhhhccCceEEEeCCcHHH
Confidence 33667777 488999999999999999986468889999998653
No 397
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=95.11 E-value=0.1 Score=37.37 Aligned_cols=67 Identities=7% Similarity=-0.058 Sum_probs=42.2
Q ss_pred CCCCEEEEcCCCCCCcc-----------hhhhhhhhcCceEEEeeCCchhhHHHHHHHHHHhhhCCCCeeEEEEccccC
Q 028600 138 GNLDILVIDMPPGTGDA-----------QLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~-----------~~~~~~~~~~d~vi~v~~~~~~~~~~~~~~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
.+.++.++|+|+..... ......+..+|.+++|++............+..+...+.++ -+++||.|.
T Consensus 48 ~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~-iiv~nK~Dl 125 (174)
T cd01895 48 DGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKAIERADVVLLVIDATEGITEQDLRIAGLILEEGKAL-VIVVNKWDL 125 (174)
T ss_pred CCeeEEEEECCCCccccchhccHHHHHHHHHHHHHhhcCeEEEEEeCCCCcchhHHHHHHHHHhcCCCE-EEEEecccc
Confidence 45678999999632110 01122344789999999876654444445666666666666 488999874
No 398
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=95.06 E-value=0.39 Score=37.04 Aligned_cols=40 Identities=28% Similarity=0.307 Sum_probs=31.6
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHh----CCCeEEEEecC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASK----CQLKVGLLDAD 70 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~----~g~~VlliD~d 70 (207)
++.=++.-+.+|+||||+-..+|+.+|.- .++||++||.-
T Consensus 136 g~lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDer 179 (308)
T COG3854 136 GWLNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDER 179 (308)
T ss_pred CceeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEecc
Confidence 33323445889999999999999999973 47999999764
No 399
>PTZ00386 formyl tetrahydrofolate synthetase; Provisional
Probab=95.01 E-value=0.032 Score=48.05 Aligned_cols=52 Identities=29% Similarity=0.227 Sum_probs=42.1
Q ss_pred CCeEEEEEe---CCCCCcHHHHHHHHHHHHH-HhCCCeEEEEecCCCCCCccccccccCC
Q 028600 30 VKDVIAVAS---GKGGVGKSTTAVNLAVALA-SKCQLKVGLLDADVYGPSVPMMMKIDQK 85 (207)
Q Consensus 30 ~~k~I~v~s---~kgG~GkTt~a~~LA~~la-~~~g~~VlliD~d~~~~~l~~~~~~~~~ 85 (207)
.+|.|.|++ +.-|.||||++..|+.+|. + .|+++++- .+.||+--.||.+..
T Consensus 67 ~gklIlVTaitPTP~GEGKtTttIGL~~aL~~~-lgk~~~~~---lRePSlGP~FGiKGG 122 (625)
T PTZ00386 67 NGKYVVVAGMNPTPLGEGKSTTTIGLAQSLGAH-LHRKTFAC---IRQPSQGPTFGIKGG 122 (625)
T ss_pred CCcEEEEeecCCCCCCCCccchhhhhHHHHHHH-hCcceEEE---EecCCcCCcCCcccc
Confidence 478777665 5679999999999999999 6 89999874 677788777887653
No 400
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=95.00 E-value=0.032 Score=41.07 Aligned_cols=25 Identities=24% Similarity=0.373 Sum_probs=20.4
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHH
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVAL 56 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~l 56 (207)
.++|++. +..|+||||++..||..+
T Consensus 3 ~~ii~i~-G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 3 CKIIFIV-GGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred CcEEEEE-CCCCCCHHHHHHHHHHHh
Confidence 5677776 559999999999999754
No 401
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.98 E-value=0.11 Score=39.27 Aligned_cols=105 Identities=15% Similarity=0.255 Sum_probs=59.3
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCcccccccc-CCccccccccceecccccceeecccc
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKID-QKPEVTKDMKMVPIENYGVKCMSMGF 109 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (207)
+..+.+ =+.-|+|||-++..+++-+-. .|++|.++-.....-. .+...+ ....+.+ ..-.-.+.++|...
T Consensus 28 GsL~lI-EGd~~tGKSvLsqr~~YG~L~-~g~~v~yvsTe~T~re--fi~qm~sl~ydv~~-----~~l~G~l~~~~~~~ 98 (235)
T COG2874 28 GSLILI-EGDNGTGKSVLSQRFAYGFLM-NGYRVTYVSTELTVRE--FIKQMESLSYDVSD-----FLLSGRLLFFPVNL 98 (235)
T ss_pred CeEEEE-ECCCCccHHHHHHHHHHHHHh-CCceEEEEEechhHHH--HHHHHHhcCCCchH-----HHhcceeEEEEecc
Confidence 445555 688899999999999999999 9999999976543211 111110 0000000 00111222222211
Q ss_pred cCCCCCcccccchhhHHHHHHHHHhcccCCCCEEEEcCCC
Q 028600 110 LVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPP 149 (207)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~D~IiiD~~~ 149 (207)
.+..+........++.+++..+-.++|+||||+=.
T Consensus 99 -----~~~~~~~~~~~~~L~~l~~~~k~~~~dViIIDSls 133 (235)
T COG2874 99 -----EPVNWGRRSARKLLDLLLEFIKRWEKDVIIIDSLS 133 (235)
T ss_pred -----cccccChHHHHHHHHHHHhhHHhhcCCEEEEeccc
Confidence 12222233445556666666554789999999875
No 402
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=94.97 E-value=0.026 Score=38.59 Aligned_cols=19 Identities=53% Similarity=0.587 Sum_probs=17.5
Q ss_pred eCCCCCcHHHHHHHHHHHH
Q 028600 38 SGKGGVGKSTTAVNLAVAL 56 (207)
Q Consensus 38 s~kgG~GkTt~a~~LA~~l 56 (207)
++..|+||||++..|+..+
T Consensus 4 ~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 4 SGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EESTTSSHHHHHHHHHHHH
T ss_pred ECCCCCCHHHHHHHHHHHH
Confidence 6889999999999999987
No 403
>PRK06547 hypothetical protein; Provisional
Probab=94.97 E-value=0.041 Score=40.40 Aligned_cols=35 Identities=29% Similarity=0.309 Sum_probs=25.7
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCC
Q 028600 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (207)
Q Consensus 30 ~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~ 71 (207)
.+.+|+|+ +..|+||||++..||..+ | +.++++|.
T Consensus 14 ~~~~i~i~-G~~GsGKTt~a~~l~~~~----~--~~~~~~d~ 48 (172)
T PRK06547 14 GMITVLID-GRSGSGKTTLAGALAART----G--FQLVHLDD 48 (172)
T ss_pred CCEEEEEE-CCCCCCHHHHHHHHHHHh----C--CCeecccc
Confidence 36677774 899999999999998753 3 34556654
No 404
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=94.96 E-value=0.049 Score=43.82 Aligned_cols=34 Identities=32% Similarity=0.470 Sum_probs=25.6
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~ 71 (207)
+++|.+ .+..|+|||++|..||..+ + ..+|.+|.
T Consensus 4 ~~~i~i-~GptgsGKt~la~~la~~~----~--~~iis~Ds 37 (307)
T PRK00091 4 PKVIVI-VGPTASGKTALAIELAKRL----N--GEIISADS 37 (307)
T ss_pred ceEEEE-ECCCCcCHHHHHHHHHHhC----C--CcEEeccc
Confidence 466666 6888999999999998854 2 35677774
No 405
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=94.95 E-value=0.23 Score=36.76 Aligned_cols=145 Identities=17% Similarity=0.126 Sum_probs=75.4
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccccCCccccccccceecccccceeeccccc
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGFL 110 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (207)
+-++.+ +-.|=||||-|..+|.-..- .|.||.++-+=-.. +..|... . ......++....++..
T Consensus 29 Gli~V~--TG~GKGKTTAAlG~alRa~G-hG~rv~vvQFiKg~----~~~GE~~--~-------~~~~~~~v~~~~~~~g 92 (198)
T COG2109 29 GLIIVF--TGNGKGKTTAALGLALRALG-HGLRVGVVQFIKGG----WKYGEEA--A-------LEKFGLGVEFHGMGEG 92 (198)
T ss_pred CeEEEE--ecCCCChhHHHHHHHHHHhc-CCCEEEEEEEeecC----cchhHHH--H-------HHhhccceeEEecCCc
Confidence 444544 45577999999999999999 99999998543211 1111100 0 0000122333333321
Q ss_pred CCCCCcccc-cchhhHHHHHHHHHhcccCCCCEEEEcCCCC------CCcchhhhhhhh---cCceEEEeeCCchhhHHH
Q 028600 111 VPSSSPVVW-RGPMVMSALRKMSREVDWGNLDILVIDMPPG------TGDAQLTTTQTL---QLSGALIVSTPQDVALID 180 (207)
Q Consensus 111 ~~~~~~~~~-~~~~~~~~l~~~~~~l~~~~~D~IiiD~~~~------~~~~~~~~~~~~---~~d~vi~v~~~~~~~~~~ 180 (207)
..-+..... ........+....+.+++..||+||+|==.. ++.... +..+. ....||+-=...+..+-+
T Consensus 93 ~tw~~~~~~~d~~aa~~~w~~a~~~l~~~~ydlviLDEl~~al~~g~l~~eeV-~~~l~~kP~~~~vIiTGr~ap~~lie 171 (198)
T COG2109 93 FTWETQDREADIAAAKAGWEHAKEALADGKYDLVILDELNYALRYGLLPLEEV-VALLKARPEHTHVIITGRGAPPELIE 171 (198)
T ss_pred eeCCCcCcHHHHHHHHHHHHHHHHHHhCCCCCEEEEehhhHHHHcCCCCHHHH-HHHHhcCCCCcEEEEECCCCCHHHHH
Confidence 111111000 0123345666666666647899999996531 121111 22221 233455555566666777
Q ss_pred HHHHHHHhhhCC
Q 028600 181 ARKGITMFSKVQ 192 (207)
Q Consensus 181 ~~~~l~~l~~~~ 192 (207)
+-.++..+....
T Consensus 172 ~ADlVTEm~~vK 183 (198)
T COG2109 172 LADLVTEMRLVK 183 (198)
T ss_pred HHHHHhhccccc
Confidence 767776666543
No 406
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=94.93 E-value=0.025 Score=40.21 Aligned_cols=32 Identities=38% Similarity=0.437 Sum_probs=24.2
Q ss_pred EEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCC
Q 028600 36 VASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (207)
Q Consensus 36 v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~ 73 (207)
+..+..|+||||++..|+..+ | ..++|.|.-.
T Consensus 3 ~l~G~~GsGKST~a~~l~~~~----~--~~~i~~D~~~ 34 (150)
T cd02021 3 VVMGVSGSGKSTVGKALAERL----G--APFIDGDDLH 34 (150)
T ss_pred EEEcCCCCCHHHHHHHHHhhc----C--CEEEeCcccc
Confidence 446999999999999998863 3 3567877654
No 407
>PRK09866 hypothetical protein; Provisional
Probab=94.92 E-value=0.11 Score=45.86 Aligned_cols=67 Identities=15% Similarity=0.126 Sum_probs=45.2
Q ss_pred CCCCEEEEcCCCCCCc--c---hhhhhhhhcCceEEEeeCCchhhHHHHHHHHHHhhhCCC--CeeEEEEccccC
Q 028600 138 GNLDILVIDMPPGTGD--A---QLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQV--PVCSFLAQIISS 205 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~--~---~~~~~~~~~~d~vi~v~~~~~~~~~~~~~~l~~l~~~~~--~~~g~v~N~~~~ 205 (207)
..+.+|++|||+-... . ......+..+|.|++|++....--..-..+++.+.+.+. ++ -+|+||+|.
T Consensus 228 ~~~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~~K~~PV-ILVVNKIDl 301 (741)
T PRK09866 228 YPGQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDEEVREAILAVGQSVPL-YVLVNKFDQ 301 (741)
T ss_pred ccCCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhHHHHHHHHHhcCCCCCE-EEEEEcccC
Confidence 5689999999963221 1 123446678999999999876322233456677777663 54 689999985
No 408
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=94.92 E-value=0.11 Score=37.36 Aligned_cols=66 Identities=9% Similarity=0.076 Sum_probs=44.8
Q ss_pred CCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCch-hhHHHHHHHHHHhhhC--CCCeeEEEEcccc
Q 028600 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDARKGITMFSKV--QVPVCSFLAQIIS 204 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~-~~~~~~~~~l~~l~~~--~~~~~g~v~N~~~ 204 (207)
..+.+-+.|+++.-.........+..+|.+++|.+.+. .+...+...++.+.+. +.++ -+|.|+.|
T Consensus 47 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p~-ivv~nK~D 115 (161)
T cd04124 47 KTILVDFWDTAGQERFQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREYRPEIPC-IVVANKID 115 (161)
T ss_pred EEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcE-EEEEECcc
Confidence 45778899999643322233344557899999998754 4566677777777654 5565 58999987
No 409
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=94.91 E-value=0.022 Score=42.41 Aligned_cols=33 Identities=27% Similarity=0.366 Sum_probs=25.1
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCC
Q 028600 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (207)
Q Consensus 33 ~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~ 71 (207)
+|+| ++.+|+||||+|..|+..+. .+.+|..|-
T Consensus 1 ii~i-~G~sgsGKTtla~~l~~~~~-----~~~~i~~Dd 33 (187)
T cd02024 1 IVGI-SGVTNSGKTTLAKLLQRILP-----NCCVIHQDD 33 (187)
T ss_pred CEEE-ECCCCCCHHHHHHHHHHHcC-----CCeEEcccc
Confidence 3566 58899999999999988752 366777664
No 410
>PRK06761 hypothetical protein; Provisional
Probab=94.90 E-value=0.048 Score=43.22 Aligned_cols=39 Identities=36% Similarity=0.499 Sum_probs=30.8
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEE-EecCC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGL-LDADV 71 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~Vll-iD~d~ 71 (207)
.++|.| .+..|+||||++..|+..+.. .|.++.. .+.+.
T Consensus 3 ~~lIvI-~G~~GsGKTTla~~L~~~L~~-~g~~v~~~~~~~~ 42 (282)
T PRK06761 3 TKLIII-EGLPGFGKSTTAKMLNDILSQ-NGIEVELYLEGNL 42 (282)
T ss_pred CcEEEE-ECCCCCCHHHHHHHHHHhcCc-CceEEEEEecCCC
Confidence 456666 577899999999999999988 8988875 45444
No 411
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=94.89 E-value=0.11 Score=36.75 Aligned_cols=64 Identities=11% Similarity=0.087 Sum_probs=40.5
Q ss_pred CCCEEEEcCCCCCCcch------hhhhhh--hcCceEEEeeCCchhhHHHHHHHHHHhhhCCCCeeEEEEccccC
Q 028600 139 NLDILVIDMPPGTGDAQ------LTTTQT--LQLSGALIVSTPQDVALIDARKGITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 139 ~~D~IiiD~~~~~~~~~------~~~~~~--~~~d~vi~v~~~~~~~~~~~~~~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
.+++.++|+|+...... +....+ ..+|.+++|++.... ........++.+.+.++ -+++|+.|.
T Consensus 42 ~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~--~~~~~~~~~~~~~~~~~-iiv~NK~Dl 113 (158)
T cd01879 42 GKEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIVNVVDATNL--ERNLYLTLQLLELGLPV-VVALNMIDE 113 (158)
T ss_pred CeEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEEEEEeeCCcc--hhHHHHHHHHHHcCCCE-EEEEehhhh
Confidence 46789999996422111 112222 368999999998763 23334455566667776 489999884
No 412
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=94.89 E-value=0.12 Score=37.47 Aligned_cols=67 Identities=12% Similarity=0.174 Sum_probs=44.3
Q ss_pred CCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCchh-hHHHHHHHHHHhhhC----CCCeeEEEEccccC
Q 028600 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDV-ALIDARKGITMFSKV----QVPVCSFLAQIISS 205 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~~-~~~~~~~~l~~l~~~----~~~~~g~v~N~~~~ 205 (207)
..+.+.++|+|+..............+|.+++|++.... ++..+...+..+.+. +.++ -+|.||.|.
T Consensus 41 ~~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~pi-liv~NK~Dl 112 (167)
T cd04161 41 DKYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPI-LVLANKQDK 112 (167)
T ss_pred CCEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcE-EEEEeCCCC
Confidence 467889999996433222223445579999999987654 566666666655432 4454 689999883
No 413
>PRK04040 adenylate kinase; Provisional
Probab=94.87 E-value=0.038 Score=41.16 Aligned_cols=26 Identities=35% Similarity=0.437 Sum_probs=22.2
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHH
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALA 57 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la 57 (207)
+++|+| .+.+|+||||++..|+..+.
T Consensus 2 ~~~i~v-~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 2 MKVVVV-TGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred CeEEEE-EeCCCCCHHHHHHHHHHHhc
Confidence 567777 58899999999999999775
No 414
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=94.82 E-value=0.9 Score=34.01 Aligned_cols=34 Identities=21% Similarity=0.279 Sum_probs=25.7
Q ss_pred EEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEec
Q 028600 36 VASGKGGVGKSTTAVNLAVALASKCQLKVGLLDA 69 (207)
Q Consensus 36 v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~ 69 (207)
+.++..|+||||+...|+..+....+.+++.++-
T Consensus 5 lI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~ 38 (198)
T cd01131 5 LVTGPTGSGKSTTLAAMIDYINKNKTHHILTIED 38 (198)
T ss_pred EEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcC
Confidence 3468899999999999988887623556666654
No 415
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=94.80 E-value=0.039 Score=46.22 Aligned_cols=35 Identities=37% Similarity=0.318 Sum_probs=28.9
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEE
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLL 67 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~Vlli 67 (207)
.+=|.+ ++.+|+||||.++.||..|++ +|+=|=-+
T Consensus 263 aeGILI-AG~PGaGKsTFaqAlAefy~~-~GkiVKTm 297 (604)
T COG1855 263 AEGILI-AGAPGAGKSTFAQALAEFYAS-QGKIVKTM 297 (604)
T ss_pred hcceEE-ecCCCCChhHHHHHHHHHHHh-cCcEEeec
Confidence 445666 688999999999999999999 99855444
No 416
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=94.80 E-value=0.28 Score=35.91 Aligned_cols=33 Identities=36% Similarity=0.400 Sum_probs=24.3
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCC
Q 028600 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (207)
Q Consensus 32 k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~ 71 (207)
+.|.+ -+..|+||||++..||..+.. -++|.|.
T Consensus 5 ~~I~l-iG~~GaGKStl~~~La~~l~~------~~vd~D~ 37 (172)
T PRK05057 5 RNIFL-VGPMGAGKSTIGRQLAQQLNM------EFYDSDQ 37 (172)
T ss_pred CEEEE-ECCCCcCHHHHHHHHHHHcCC------cEEECCc
Confidence 34555 378899999999999986532 4677775
No 417
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=94.78 E-value=0.022 Score=40.00 Aligned_cols=31 Identities=32% Similarity=0.340 Sum_probs=23.6
Q ss_pred EEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCC
Q 028600 35 AVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (207)
Q Consensus 35 ~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~ 71 (207)
.++.+.+|+||||++..|+.. .| ..+|+.|.
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~----~~--~~~i~~D~ 32 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKR----LG--AVVISQDE 32 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHH----ST--EEEEEHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH----CC--CEEEeHHH
Confidence 344689999999998888763 44 57788886
No 418
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=94.76 E-value=0.04 Score=40.10 Aligned_cols=34 Identities=32% Similarity=0.497 Sum_probs=25.6
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~ 71 (207)
++.|.++ +..|+||||++..||..+ |. .++|.|.
T Consensus 2 ~~~i~~~-G~~GsGKst~~~~la~~l----g~--~~~d~D~ 35 (171)
T PRK03731 2 TQPLFLV-GARGCGKTTVGMALAQAL----GY--RFVDTDQ 35 (171)
T ss_pred CCeEEEE-CCCCCCHHHHHHHHHHHh----CC--CEEEccH
Confidence 4556664 889999999999999865 43 4677775
No 419
>PLN02200 adenylate kinase family protein
Probab=94.72 E-value=0.054 Score=41.83 Aligned_cols=24 Identities=25% Similarity=0.390 Sum_probs=19.5
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHH
Q 028600 33 VIAVASGKGGVGKSTTAVNLAVAL 56 (207)
Q Consensus 33 ~I~v~s~kgG~GkTt~a~~LA~~l 56 (207)
.+.+..+.+|+||||+|..||..+
T Consensus 44 ~ii~I~G~PGSGKsT~a~~La~~~ 67 (234)
T PLN02200 44 FITFVLGGPGSGKGTQCEKIVETF 67 (234)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 445557999999999999998754
No 420
>TIGR03172 probable selenium-dependent hydroxylase accessory protein YqeC. This uncharacterized protein family includes YqeC from Escherichia coli. A phylogenetic profiling analysis shows correlation with SelD, the selenium donor protein, even in species where SelD contributes to neither selenocysteine nor selenouridine biosynthesis. Instead, this family, and families TIGR03309 and TIGR03310 appear to mark selenium-dependent molybdenum hydroxylase maturation systems.
Probab=94.71 E-value=0.054 Score=41.70 Aligned_cols=32 Identities=25% Similarity=0.211 Sum_probs=27.0
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEec
Q 028600 34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDA 69 (207)
Q Consensus 34 I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~ 69 (207)
|+|++ +.||||+...||..+.. .|++|++-..
T Consensus 2 i~~vG---~gGKTtl~~~l~~~~~~-~g~~v~~TTT 33 (232)
T TIGR03172 2 IAFVG---AGGKTSTMFWLAAEYRK-EGYRVLVTTT 33 (232)
T ss_pred EEEEc---CCcHHHHHHHHHHHHHH-CCCeEEEECC
Confidence 55654 47999999999999999 9999998644
No 421
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=94.69 E-value=0.057 Score=39.47 Aligned_cols=40 Identities=23% Similarity=0.185 Sum_probs=28.8
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~ 72 (207)
++.+.+ .+..|+|||++...+...+.+ .+.-++.++++..
T Consensus 24 ~~~~ll-~G~~G~GKT~ll~~~~~~~~~-~~~~~~~~~~~~~ 63 (185)
T PF13191_consen 24 PRNLLL-TGESGSGKTSLLRALLDRLAE-RGGYVISINCDDS 63 (185)
T ss_dssp ---EEE--B-TTSSHHHHHHHHHHHHHH-HT--EEEEEEETT
T ss_pred CcEEEE-ECCCCCCHHHHHHHHHHHHHh-cCCEEEEEEEecc
Confidence 555666 689999999999999999999 5544888888876
No 422
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=94.68 E-value=0.052 Score=46.14 Aligned_cols=67 Identities=9% Similarity=0.082 Sum_probs=47.0
Q ss_pred CCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCchh-hHHHHHHHHHHhhhCCCCeeEEEEccccC
Q 028600 139 NLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDV-ALIDARKGITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 139 ~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~~-~~~~~~~~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
.+.+.+||+|+--.-.......+..+|.+++|+++... ...++.+.+..++..+++.+-+++||.|.
T Consensus 116 ~~~i~~IDtPGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lgi~~iIVvlNKiDl 183 (460)
T PTZ00327 116 KRHVSFVDCPGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMKLKHIIILQNKIDL 183 (460)
T ss_pred cceEeeeeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcCCCcEEEEEecccc
Confidence 45789999996211112234455578999999999864 34556677777777888766789999984
No 423
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=94.65 E-value=0.12 Score=42.71 Aligned_cols=37 Identities=30% Similarity=0.347 Sum_probs=32.6
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d 70 (207)
+-+|.|+ +..|+||||++..|...|.. + .+|.++.-+
T Consensus 5 ~~~i~i~-G~~gsGKTTl~~~l~~~l~~-~-~~V~~ik~~ 41 (369)
T PRK14490 5 PFEIAFC-GYSGSGKTTLITALVRRLSE-R-FSVGYYKHG 41 (369)
T ss_pred CEEEEEE-eCCCCCHHHHHHHHHHHHhh-C-ceEEEEEeC
Confidence 6789996 55799999999999999999 7 999999754
No 424
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=94.64 E-value=0.11 Score=36.40 Aligned_cols=67 Identities=12% Similarity=0.166 Sum_probs=46.7
Q ss_pred CCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCch-hhHHHHHHHHHHhhhCC---CCeeEEEEccccC
Q 028600 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDARKGITMFSKVQ---VPVCSFLAQIISS 205 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~-~~~~~~~~~l~~l~~~~---~~~~g~v~N~~~~ 205 (207)
..+++.++|+|+...........+..+|.+++++++.. .+...+...+..+.+.. .++ -+|+|+.|.
T Consensus 47 ~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~-ivv~nK~D~ 117 (159)
T cd00154 47 KTVKLQIWDTAGQERFRSITPSYYRGAHGAILVYDITNRESFENLDKWLKELKEYAPENIPI-ILVGNKIDL 117 (159)
T ss_pred EEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcE-EEEEEcccc
Confidence 56788999999743322334555567899999988865 35667777776666544 555 689999875
No 425
>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]
Probab=94.64 E-value=0.25 Score=37.79 Aligned_cols=35 Identities=34% Similarity=0.428 Sum_probs=28.0
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHhCCC--eEEEEec
Q 028600 33 VIAVASGKGGVGKSTTAVNLAVALASKCQL--KVGLLDA 69 (207)
Q Consensus 33 ~I~v~s~kgG~GkTt~a~~LA~~la~~~g~--~VlliD~ 69 (207)
.+.| .+-+-+||||.|..|..+|.. +|. .|.++|-
T Consensus 3 LVvi-~G~P~SGKstrA~~L~~~l~~-~~~K~~v~ii~d 39 (281)
T KOG3062|consen 3 LVVI-CGLPCSGKSTRAVELREALKE-RGTKQSVRIIDD 39 (281)
T ss_pred eEEE-eCCCCCCchhHHHHHHHHHHh-hcccceEEEech
Confidence 4555 588999999999999999999 884 4666653
No 426
>PRK07413 hypothetical protein; Validated
Probab=94.61 E-value=0.26 Score=40.67 Aligned_cols=31 Identities=26% Similarity=0.272 Sum_probs=26.7
Q ss_pred CCCCCcHHHHHHHHHHHHHHhCCC------eEEEEecC
Q 028600 39 GKGGVGKSTTAVNLAVALASKCQL------KVGLLDAD 70 (207)
Q Consensus 39 ~kgG~GkTt~a~~LA~~la~~~g~------~VlliD~d 70 (207)
+-.|=||||-|..+|.-.+- .|. ||+++=+=
T Consensus 26 tG~GKGKTTAAlGlalRA~G-~G~~~~~~~rV~ivQFl 62 (382)
T PRK07413 26 DGEGKGKSQAALGVVLRTIG-LGICEKRQTRVLLLRFL 62 (382)
T ss_pred eCCCCCHHHHHHHHHHHHhc-CCCCcCCCCeEEEEEEE
Confidence 45677999999999999999 998 99999543
No 427
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=94.60 E-value=0.055 Score=39.54 Aligned_cols=28 Identities=36% Similarity=0.452 Sum_probs=23.2
Q ss_pred EeCCCCCcHHHHHHHHHHHHHHhCCCeEE
Q 028600 37 ASGKGGVGKSTTAVNLAVALASKCQLKVG 65 (207)
Q Consensus 37 ~s~kgG~GkTt~a~~LA~~la~~~g~~Vl 65 (207)
..++.|+||||+...+...+.. .|.+|.
T Consensus 4 iTG~pG~GKTTll~k~i~~l~~-~~~~v~ 31 (168)
T PF03266_consen 4 ITGPPGVGKTTLLKKVIEELKK-KGLPVG 31 (168)
T ss_dssp EES-TTSSHHHHHHHHHHHHHH-TCGGEE
T ss_pred EECcCCCCHHHHHHHHHHHhhc-cCCccc
Confidence 3589999999999999999988 777663
No 428
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=94.57 E-value=0.098 Score=45.92 Aligned_cols=64 Identities=14% Similarity=0.154 Sum_probs=45.3
Q ss_pred CEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCchhhHHHHHHHHHHhhhCCCCeeEEEEccccC
Q 028600 141 DILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 141 D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~~~~~~~~~~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
.+.++|||+-.............+|.+++|++++.....++.+.+..+...+.++ -+++|+.|.
T Consensus 136 ~i~~iDTPGhe~F~~~r~rga~~aDiaILVVda~dgv~~qT~e~i~~~~~~~vPi-IVviNKiDl 199 (587)
T TIGR00487 136 MITFLDTPGHEAFTSMRARGAKVTDIVVLVVAADDGVMPQTIEAISHAKAANVPI-IVAINKIDK 199 (587)
T ss_pred EEEEEECCCCcchhhHHHhhhccCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCE-EEEEECccc
Confidence 7899999963221122222344689999999887656666777777777788886 599999984
No 429
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=94.57 E-value=0.037 Score=38.90 Aligned_cols=30 Identities=50% Similarity=0.605 Sum_probs=22.6
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecC
Q 028600 34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70 (207)
Q Consensus 34 I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d 70 (207)
|+| ++..|+||||+|..||..+ |.+ ++|.|
T Consensus 2 I~i-~G~~GsGKst~a~~la~~~----~~~--~~~~~ 31 (147)
T cd02020 2 IAI-DGPAGSGKSTVAKLLAKKL----GLP--YLDTG 31 (147)
T ss_pred EEE-ECCCCCCHHHHHHHHHHHh----CCc--eeccc
Confidence 555 7999999999999999754 433 56666
No 430
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=94.56 E-value=0.12 Score=43.40 Aligned_cols=67 Identities=9% Similarity=-0.006 Sum_probs=45.0
Q ss_pred CCCCEEEEcCCCCCCcc-------h----hhhhhhhcCceEEEeeCCchhhHHHHHHHHHHhhhCCCCeeEEEEccccC
Q 028600 138 GNLDILVIDMPPGTGDA-------Q----LTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~-------~----~~~~~~~~~d~vi~v~~~~~~~~~~~~~~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
.+..++++|||+.-... . .+...+..+|.+++|++....-...-.+.+..+.+.+.++ -+|+||+|-
T Consensus 218 ~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~~~~~i-iiv~NK~Dl 295 (429)
T TIGR03594 218 NGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLKAIERADVVLLVLDATEGITEQDLRIAGLILEAGKAL-VIVVNKWDL 295 (429)
T ss_pred CCcEEEEEECCCccccccchhhHHHHHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHcCCcE-EEEEECccc
Confidence 34579999999631110 0 1233556799999999988654444556677777777776 589999884
No 431
>PRK00093 GTP-binding protein Der; Reviewed
Probab=94.51 E-value=0.13 Score=43.47 Aligned_cols=67 Identities=7% Similarity=-0.060 Sum_probs=46.3
Q ss_pred CCCCEEEEcCCCCCCcc-----------hhhhhhhhcCceEEEeeCCchhhHHHHHHHHHHhhhCCCCeeEEEEccccC
Q 028600 138 GNLDILVIDMPPGTGDA-----------QLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~-----------~~~~~~~~~~d~vi~v~~~~~~~~~~~~~~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
.+.++.++|||+.-... ..++..+..+|.+++|+++...-...-.+.+..+.+.+.+++ +++|++|.
T Consensus 219 ~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~~~~~~i-vv~NK~Dl 296 (435)
T PRK00093 219 DGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLKAIERADVVLLVIDATEGITEQDLRIAGLALEAGRALV-IVVNKWDL 296 (435)
T ss_pred CCeeEEEEECCCCCCCcchhhHHHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCcEE-EEEECccC
Confidence 45679999999631100 112345667999999999887555555567777777777764 89999884
No 432
>PRK15494 era GTPase Era; Provisional
Probab=94.51 E-value=0.12 Score=42.16 Aligned_cols=66 Identities=12% Similarity=0.138 Sum_probs=40.7
Q ss_pred CCCCEEEEcCCCCCCcc-hh-------hhhhhhcCceEEEeeCCchhhHHHH-HHHHHHhhhCCCCeeEEEEccccC
Q 028600 138 GNLDILVIDMPPGTGDA-QL-------TTTQTLQLSGALIVSTPQDVALIDA-RKGITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~-~~-------~~~~~~~~d~vi~v~~~~~~~~~~~-~~~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
.++.++++|||+..... .+ ....+..+|.+++|++... +.... ...++.+.+.+.+++ +|+|+.|.
T Consensus 98 ~~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l~~aDvil~VvD~~~-s~~~~~~~il~~l~~~~~p~I-lViNKiDl 172 (339)
T PRK15494 98 KDTQVILYDTPGIFEPKGSLEKAMVRCAWSSLHSADLVLLIIDSLK-SFDDITHNILDKLRSLNIVPI-FLLNKIDI 172 (339)
T ss_pred CCeEEEEEECCCcCCCcccHHHHHHHHHHHHhhhCCEEEEEEECCC-CCCHHHHHHHHHHHhcCCCEE-EEEEhhcC
Confidence 45678999999642210 01 1123457899999988755 22222 345666666666765 78899883
No 433
>PRK07261 topology modulation protein; Provisional
Probab=94.50 E-value=0.046 Score=40.02 Aligned_cols=23 Identities=43% Similarity=0.504 Sum_probs=17.9
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHH
Q 028600 33 VIAVASGKGGVGKSTTAVNLAVAL 56 (207)
Q Consensus 33 ~I~v~s~kgG~GkTt~a~~LA~~l 56 (207)
.|.|+ +.+|+||||++..|+..+
T Consensus 2 ri~i~-G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 2 KIAII-GYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEE-cCCCCCHHHHHHHHHHHh
Confidence 35554 789999999999987643
No 434
>PRK13947 shikimate kinase; Provisional
Probab=94.48 E-value=0.046 Score=39.72 Aligned_cols=32 Identities=31% Similarity=0.461 Sum_probs=24.0
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCC
Q 028600 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (207)
Q Consensus 33 ~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~ 71 (207)
-|.+ .+.+|+||||++..||..| |.+ ++|.|.
T Consensus 3 ~I~l-~G~~GsGKst~a~~La~~l----g~~--~id~d~ 34 (171)
T PRK13947 3 NIVL-IGFMGTGKTTVGKRVATTL----SFG--FIDTDK 34 (171)
T ss_pred eEEE-EcCCCCCHHHHHHHHHHHh----CCC--EEECch
Confidence 3555 4889999999999998765 444 577775
No 435
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=94.47 E-value=0.052 Score=48.11 Aligned_cols=67 Identities=13% Similarity=0.107 Sum_probs=45.0
Q ss_pred CCCCEEEEcCCCCCCcc-hhhhhhhhcCceEEEeeCCchhhHHHHHHHHHHhhhCCCCeeEEEEccccC
Q 028600 138 GNLDILVIDMPPGTGDA-QLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~-~~~~~~~~~~d~vi~v~~~~~~~~~~~~~~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
+++.++++|+|+ .... ......+..+|.+++|+++...-.....+.+..+...+.+.+-+++||+|.
T Consensus 102 ~~~~~~liDtPG-~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~~~~~iivvvNK~D~ 169 (632)
T PRK05506 102 PKRKFIVADTPG-HEQYTRNMVTGASTADLAIILVDARKGVLTQTRRHSFIASLLGIRHVVLAVNKMDL 169 (632)
T ss_pred CCceEEEEECCC-hHHHHHHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHhCCCeEEEEEEeccc
Confidence 567889999996 2211 122344567899999998866444455555666666676655688999984
No 436
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=94.45 E-value=0.19 Score=33.92 Aligned_cols=63 Identities=11% Similarity=0.114 Sum_probs=40.7
Q ss_pred CCCCEEEEcCCCCCCcch---------hhhhhhhcCceEEEeeCCchhhHHHHHHHHHHhhhCCCCeeEEEEcc
Q 028600 138 GNLDILVIDMPPGTGDAQ---------LTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPVCSFLAQI 202 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~---------~~~~~~~~~d~vi~v~~~~~~~~~~~~~~l~~l~~~~~~~~g~v~N~ 202 (207)
....++++|+|+-.+... .....+..+|.+++|++.+..--....+.+++++ .+.++ -+|+|+
T Consensus 45 ~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~d~ii~vv~~~~~~~~~~~~~~~~l~-~~~~~-i~v~NK 116 (116)
T PF01926_consen 45 NNKKFILVDTPGINDGESQDNDGKEIRKFLEQISKSDLIIYVVDASNPITEDDKNILRELK-NKKPI-ILVLNK 116 (116)
T ss_dssp TTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCTESEEEEEEETTSHSHHHHHHHHHHHH-TTSEE-EEEEES
T ss_pred ceeeEEEEeCCCCcccchhhHHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHh-cCCCE-EEEEcC
Confidence 345668999996433111 1233445789999999977733355667777775 44554 688886
No 437
>PRK07773 replicative DNA helicase; Validated
Probab=94.42 E-value=0.081 Score=48.75 Aligned_cols=42 Identities=17% Similarity=0.340 Sum_probs=35.0
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCC
Q 028600 34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPS 75 (207)
Q Consensus 34 I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~ 75 (207)
+.+.++.+|.|||+++.++|...|...|++|+++-++.....
T Consensus 219 livIagrPg~GKT~fal~ia~~~a~~~~~~V~~fSlEms~~q 260 (886)
T PRK07773 219 LIIVAARPSMGKTTFGLDFARNCAIRHRLAVAIFSLEMSKEQ 260 (886)
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHhcCCeEEEEecCCCHHH
Confidence 444489999999999999999999746899999988875533
No 438
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=94.37 E-value=0.058 Score=40.32 Aligned_cols=34 Identities=35% Similarity=0.353 Sum_probs=26.2
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~ 72 (207)
|++|+++ +..|+||||++..|+. .|. .++|+|.-
T Consensus 2 ~~~i~lt-G~~gsGKst~~~~l~~-----~g~--~~i~~D~~ 35 (194)
T PRK00081 2 MLIIGLT-GGIGSGKSTVANLFAE-----LGA--PVIDADAI 35 (194)
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHH-----cCC--EEEEecHH
Confidence 6778885 7789999999988775 354 57888863
No 439
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=94.36 E-value=0.11 Score=38.13 Aligned_cols=42 Identities=26% Similarity=0.283 Sum_probs=34.6
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHH-HhCCCeEEEEecCCCCC
Q 028600 32 DVIAVASGKGGVGKSTTAVNLAVALA-SKCQLKVGLLDADVYGP 74 (207)
Q Consensus 32 k~I~v~s~kgG~GkTt~a~~LA~~la-~~~g~~VlliD~d~~~~ 74 (207)
+...+..+..|+|||.++..||..+- . ...+.+.+|+.....
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~~-~~~~~~~~d~s~~~~ 45 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFVG-SERPLIRIDMSEYSE 45 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT-S-SCCEEEEEEGGGHCS
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhccC-CccchHHHhhhcccc
Confidence 33444468899999999999999999 7 788999999987664
No 440
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=94.33 E-value=0.71 Score=35.34 Aligned_cols=66 Identities=9% Similarity=-0.003 Sum_probs=38.7
Q ss_pred CCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCch-hhHHHHHHHH-HHhhh--CCCCeeEEEEcccc
Q 028600 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDARKGI-TMFSK--VQVPVCSFLAQIIS 204 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~-~~~~~~~~~l-~~l~~--~~~~~~g~v~N~~~ 204 (207)
..+.+.|.|+++.-....+.......+|.+++|.+... .+++.+...+ ..+.+ .+.++ -+|.|+.|
T Consensus 47 ~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~~~~pi-iLVgnK~D 116 (222)
T cd04173 47 RRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKV-VLVGCKLD 116 (222)
T ss_pred EEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCE-EEEEECcc
Confidence 45678889998643222222233447899888887655 4566664332 23332 24454 57889987
No 441
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=94.31 E-value=0.094 Score=44.16 Aligned_cols=68 Identities=10% Similarity=0.080 Sum_probs=52.7
Q ss_pred CCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCchhhHHHHHHHHHHhhhCCCCeeEEEEccccCC
Q 028600 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPVCSFLAQIISSM 206 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~~~~~~~~~~l~~l~~~~~~~~g~v~N~~~~~ 206 (207)
+++-+=|+|||+-.+...-.-..+.-.|.+++++++....+.+++-.++..-+.|.+.+ +|+|++|+.
T Consensus 66 ~~~~INIvDTPGHADFGGEVERvl~MVDgvlLlVDA~EGpMPQTrFVlkKAl~~gL~PI-VVvNKiDrp 133 (603)
T COG1217 66 NGTRINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALALGLKPI-VVINKIDRP 133 (603)
T ss_pred CCeEEEEecCCCcCCccchhhhhhhhcceEEEEEEcccCCCCchhhhHHHHHHcCCCcE-EEEeCCCCC
Confidence 67889999999632211221233445899999999999999999999998888898885 999999974
No 442
>PRK06851 hypothetical protein; Provisional
Probab=94.29 E-value=0.16 Score=41.79 Aligned_cols=46 Identities=22% Similarity=0.247 Sum_probs=35.5
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCcc
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVP 77 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~ 77 (207)
.+.+.+.++.+|+||||+...++..+.+ .|.+|-.+=+.....++.
T Consensus 29 ~~~~~il~G~pGtGKStl~~~i~~~~~~-~g~~Ve~~~~~~d~~slD 74 (367)
T PRK06851 29 ANRIFILKGGPGTGKSTLMKKIGEEFLE-KGYDVEFLHCSSDNDSLD 74 (367)
T ss_pred cceEEEEECCCCCCHHHHHHHHHHHHHH-cCCeEEEEEcCCCCCcee
Confidence 3444555799999999999999999999 899988875555444443
No 443
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=94.29 E-value=0.059 Score=40.46 Aligned_cols=35 Identities=23% Similarity=0.387 Sum_probs=25.0
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~ 71 (207)
+++|.+ ++.+|+||||++..||.. .|..+ ++..|.
T Consensus 3 ~~~i~i-~G~~G~GKst~a~~l~~~----~~~~~-~~~~D~ 37 (197)
T PRK12339 3 STIHFI-GGIPGVGKTSISGYIARH----RAIDI-VLSGDY 37 (197)
T ss_pred ceEEEE-ECCCCCCHHHHHHHHHHh----cCCeE-EehhHH
Confidence 345555 799999999999999885 35444 565554
No 444
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=94.23 E-value=0.17 Score=35.97 Aligned_cols=67 Identities=15% Similarity=0.064 Sum_probs=40.4
Q ss_pred CCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCchh-hHHHHHHHHHH-hhh---CCCCeeEEEEccccC
Q 028600 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDV-ALIDARKGITM-FSK---VQVPVCSFLAQIISS 205 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~~-~~~~~~~~l~~-l~~---~~~~~~g~v~N~~~~ 205 (207)
....+.++|+|+...........+..+|.+++|++.... +.....+.+.. ++. .+.++ -+|+||.|.
T Consensus 41 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi-iiv~nK~Dl 112 (158)
T cd04151 41 KNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVL-LVFANKQDM 112 (158)
T ss_pred CCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcE-EEEEeCCCC
Confidence 456789999996433223323445579999999988654 23333333332 222 24555 699999883
No 445
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=94.21 E-value=0.042 Score=41.21 Aligned_cols=32 Identities=31% Similarity=0.238 Sum_probs=23.7
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCC
Q 028600 34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (207)
Q Consensus 34 I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~ 73 (207)
|+++ +..|+||||++..|+ . .| ..+||+|.-.
T Consensus 2 i~it-G~~gsGKst~~~~l~----~-~g--~~~i~~D~i~ 33 (196)
T PRK14732 2 IGIT-GMIGGGKSTALKILE----E-LG--AFGISADRLA 33 (196)
T ss_pred EEEE-CCCCccHHHHHHHHH----H-CC--CEEEecchHH
Confidence 5664 778999999999775 3 46 4567888654
No 446
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=94.21 E-value=0.16 Score=38.23 Aligned_cols=29 Identities=34% Similarity=0.334 Sum_probs=21.4
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHhCCCe
Q 028600 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLK 63 (207)
Q Consensus 33 ~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~ 63 (207)
.|++. +-+|+||||+...|....-. .++.
T Consensus 7 kivv~-G~~g~GKTtl~~~l~~~~~~-~~~~ 35 (219)
T COG1100 7 KIVVL-GDGGVGKTTLLNRLVGDEFP-EGYP 35 (219)
T ss_pred EEEEE-cCCCccHHHHHHHHhcCcCc-ccCC
Confidence 34443 88999999999998876666 4444
No 447
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=94.19 E-value=0.071 Score=38.90 Aligned_cols=20 Identities=45% Similarity=0.667 Sum_probs=17.2
Q ss_pred EEEEEeCCCCCcHHHHHHHHH
Q 028600 33 VIAVASGKGGVGKSTTAVNLA 53 (207)
Q Consensus 33 ~I~v~s~kgG~GkTt~a~~LA 53 (207)
.|+++ +.+|+||||++-.|+
T Consensus 2 ~I~IT-GTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAIT-GTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEe-CCCCCchHHHHHHHH
Confidence 47775 889999999999888
No 448
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=94.18 E-value=0.15 Score=38.61 Aligned_cols=36 Identities=33% Similarity=0.326 Sum_probs=31.4
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEE
Q 028600 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLL 67 (207)
Q Consensus 30 ~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~Vlli 67 (207)
+++.|+|= +--|+||||.+..|+..|.. .|.+|++.
T Consensus 2 ~g~fI~iE-GiDGaGKTT~~~~L~~~l~~-~g~~v~~t 37 (208)
T COG0125 2 KGMFIVIE-GIDGAGKTTQAELLKERLEE-RGIKVVLT 37 (208)
T ss_pred CceEEEEE-CCCCCCHHHHHHHHHHHHHH-cCCeEEEE
Confidence 36788884 67799999999999999999 99988776
No 449
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=94.16 E-value=0.15 Score=46.77 Aligned_cols=49 Identities=24% Similarity=0.323 Sum_probs=35.8
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCC--CCCcccccccc
Q 028600 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY--GPSVPMMMKID 83 (207)
Q Consensus 33 ~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~--~~~l~~~~~~~ 83 (207)
++.| -+..|+|||.+|..||..+-. .+.++..+|+... ..+...++|..
T Consensus 598 ~~lf-~Gp~GvGKT~lA~~La~~l~~-~~~~~~~~dmse~~~~~~~~~l~g~~ 648 (852)
T TIGR03345 598 VFLL-VGPSGVGKTETALALAELLYG-GEQNLITINMSEFQEAHTVSRLKGSP 648 (852)
T ss_pred EEEE-ECCCCCCHHHHHHHHHHHHhC-CCcceEEEeHHHhhhhhhhccccCCC
Confidence 3455 588999999999999999977 6778888987543 23444555543
No 450
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=94.15 E-value=0.11 Score=38.77 Aligned_cols=43 Identities=23% Similarity=0.169 Sum_probs=22.9
Q ss_pred EEEEeCCCCCcHHHHHHHH-HHHHHHhCCCeEEEEecC-CCCCCccc
Q 028600 34 IAVASGKGGVGKSTTAVNL-AVALASKCQLKVGLLDAD-VYGPSVPM 78 (207)
Q Consensus 34 I~v~s~kgG~GkTt~a~~L-A~~la~~~g~~VlliD~d-~~~~~l~~ 78 (207)
|.+..++.|+|||+.|+.. ...+-+ .|++|.. +.+ +.-..+..
T Consensus 2 I~~~~G~pGsGKS~~av~~~i~~~l~-~gr~V~t-ni~gL~~~~~~~ 46 (193)
T PF05707_consen 2 IYLITGKPGSGKSYYAVSYVIIPALK-KGRPVYT-NIPGLNIEKIQP 46 (193)
T ss_dssp EEEEE--TTSSHHHHHHHHHHH-GGG-S---EEE---TTB-S--EEE
T ss_pred EEEEEcCCCCcHhHHHHHHHHHHHHh-CCCEEEE-ccCCcchhhhhh
Confidence 4555799999999999999 655555 7888777 665 43333333
No 451
>PLN02165 adenylate isopentenyltransferase
Probab=94.15 E-value=0.063 Score=43.49 Aligned_cols=38 Identities=29% Similarity=0.491 Sum_probs=28.1
Q ss_pred cCCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCC
Q 028600 27 IDGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (207)
Q Consensus 27 ~~~~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~ 71 (207)
+...+++|+++ +..|+|||+++..||..+.. -+|++|.
T Consensus 39 ~~~~g~iivIi-GPTGSGKStLA~~LA~~l~~------eIIsaDs 76 (334)
T PLN02165 39 QNCKDKVVVIM-GATGSGKSRLSVDLATRFPS------EIINSDK 76 (334)
T ss_pred cCCCCCEEEEE-CCCCCcHHHHHHHHHHHcCC------ceecCCh
Confidence 34456777775 78899999999999886532 5777774
No 452
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=94.12 E-value=0.13 Score=46.51 Aligned_cols=67 Identities=13% Similarity=0.133 Sum_probs=47.4
Q ss_pred CCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCchhhHHHHHHHHHHhhhCCCCeeEEEEccccC
Q 028600 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~~~~~~~~~~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
.++.+.|+|||+-.............+|.+|+|++.+......+.+.+..+...++++ -+++|+.|.
T Consensus 335 ~~~~ItfiDTPGhe~F~~m~~rga~~aDiaILVVdAddGv~~qT~e~i~~a~~~~vPi-IVviNKiDl 401 (787)
T PRK05306 335 NGGKITFLDTPGHEAFTAMRARGAQVTDIVVLVVAADDGVMPQTIEAINHAKAAGVPI-IVAINKIDK 401 (787)
T ss_pred CCEEEEEEECCCCccchhHHHhhhhhCCEEEEEEECCCCCCHhHHHHHHHHHhcCCcE-EEEEECccc
Confidence 3467899999963221122223345689999999887655666777788888888886 599999984
No 453
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=94.12 E-value=0.067 Score=40.31 Aligned_cols=27 Identities=44% Similarity=0.421 Sum_probs=21.8
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHH
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALAS 58 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~ 58 (207)
..+|+| ++.-|+||||+|..||..+-.
T Consensus 4 ~~~IvI-~G~IG~GKSTLa~~La~~l~~ 30 (216)
T COG1428 4 AMVIVI-EGMIGAGKSTLAQALAEHLGF 30 (216)
T ss_pred ccEEEE-ecccccCHHHHHHHHHHHhCC
Confidence 457777 799999999999998886543
No 454
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=94.08 E-value=0.073 Score=42.00 Aligned_cols=43 Identities=30% Similarity=0.301 Sum_probs=30.1
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCC-CeEEEEecCCCC
Q 028600 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQ-LKVGLLDADVYG 73 (207)
Q Consensus 30 ~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g-~~VlliD~d~~~ 73 (207)
..++|++ .+.||+||||+|..++........ ..++.+++....
T Consensus 18 ~~~~v~I-~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~ 61 (287)
T PF00931_consen 18 EVRVVAI-VGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNP 61 (287)
T ss_dssp SSEEEEE-EESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-S
T ss_pred CeEEEEE-EcCCcCCcceeeeeccccccccccccccccccccccc
Confidence 3677777 589999999999999988554122 246667766543
No 455
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=94.07 E-value=0.11 Score=35.50 Aligned_cols=32 Identities=31% Similarity=0.300 Sum_probs=25.3
Q ss_pred EeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCC
Q 028600 37 ASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (207)
Q Consensus 37 ~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~ 72 (207)
..+..|+|||+++..+|..+ |.+++-+|+...
T Consensus 3 l~G~~G~GKT~l~~~la~~l----~~~~~~i~~~~~ 34 (132)
T PF00004_consen 3 LHGPPGTGKTTLARALAQYL----GFPFIEIDGSEL 34 (132)
T ss_dssp EESSTTSSHHHHHHHHHHHT----TSEEEEEETTHH
T ss_pred EECcCCCCeeHHHHHHHhhc----cccccccccccc
Confidence 35889999999999999865 567777776643
No 456
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=94.06 E-value=0.075 Score=39.81 Aligned_cols=34 Identities=38% Similarity=0.489 Sum_probs=25.0
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCC
Q 028600 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (207)
Q Consensus 32 k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~ 72 (207)
++|+++ +..|+||||++..|+..+ |.. ++|+|--
T Consensus 2 ~~i~it-G~~gsGKst~~~~l~~~~----g~~--~i~~D~~ 35 (195)
T PRK14730 2 RRIGLT-GGIASGKSTVGNYLAQQK----GIP--ILDADIY 35 (195)
T ss_pred cEEEEE-CCCCCCHHHHHHHHHHhh----CCe--EeeCcHH
Confidence 467785 888999999999887632 554 4588763
No 457
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=94.00 E-value=0.078 Score=35.56 Aligned_cols=21 Identities=48% Similarity=0.545 Sum_probs=19.3
Q ss_pred eCCCCCcHHHHHHHHHHHHHH
Q 028600 38 SGKGGVGKSTTAVNLAVALAS 58 (207)
Q Consensus 38 s~kgG~GkTt~a~~LA~~la~ 58 (207)
.+.+|+|||+++..||..+.+
T Consensus 4 ~G~~G~GKS~l~~~l~~~l~~ 24 (107)
T PF00910_consen 4 YGPPGIGKSTLAKELAKDLLK 24 (107)
T ss_pred ECCCCCCHHHHHHHHHHHHHH
Confidence 567799999999999999998
No 458
>PRK13975 thymidylate kinase; Provisional
Probab=93.99 E-value=0.081 Score=39.33 Aligned_cols=27 Identities=37% Similarity=0.450 Sum_probs=22.4
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHH
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALAS 58 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~ 58 (207)
++.|+| -+-.|+||||++..||..+..
T Consensus 2 ~~~I~i-eG~~GsGKtT~~~~L~~~l~~ 28 (196)
T PRK13975 2 NKFIVF-EGIDGSGKTTQAKLLAEKLNA 28 (196)
T ss_pred CeEEEE-ECCCCCCHHHHHHHHHHHhCC
Confidence 567777 588899999999999998754
No 459
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=93.98 E-value=0.13 Score=36.85 Aligned_cols=66 Identities=12% Similarity=0.078 Sum_probs=43.1
Q ss_pred CCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCchh-hHHHHHHHHHHhhhC---CCCeeEEEEccccC
Q 028600 139 NLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDV-ALIDARKGITMFSKV---QVPVCSFLAQIISS 205 (207)
Q Consensus 139 ~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~~-~~~~~~~~l~~l~~~---~~~~~g~v~N~~~~ 205 (207)
.+.+.|+|+|+..............+|.++++.+.+.. +...+...++.+... +.++ -+|.|+.|.
T Consensus 51 ~~~l~i~D~~G~~~~~~~~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~-ivv~nK~Dl 120 (165)
T cd01864 51 RVKLQIWDTAGQERFRTITQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVL-LLIGNKCDL 120 (165)
T ss_pred EEEEEEEECCChHHHHHHHHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcE-EEEEECccc
Confidence 46889999997432222233444568999999887664 566666666666543 3444 588999884
No 460
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=93.95 E-value=0.066 Score=42.71 Aligned_cols=35 Identities=31% Similarity=0.276 Sum_probs=26.0
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~ 71 (207)
+++|.+ .+.+|+||||+|..|+..+. ....+|.|.
T Consensus 2 ~~liil-~G~pGSGKSTla~~L~~~~~-----~~~~l~~D~ 36 (300)
T PHA02530 2 MKIILT-VGVPGSGKSTWAREFAAKNP-----KAVNVNRDD 36 (300)
T ss_pred cEEEEE-EcCCCCCHHHHHHHHHHHCC-----CCEEEeccH
Confidence 344444 79999999999999988652 357777765
No 461
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=93.92 E-value=0.1 Score=43.83 Aligned_cols=67 Identities=9% Similarity=0.123 Sum_probs=42.3
Q ss_pred CCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCchhh-HHHHHHHHHHhhhCCCCeeEEEEccccC
Q 028600 139 NLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVA-LIDARKGITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 139 ~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~~~-~~~~~~~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
.+.+.|+|+|+...-....+..+..+|.+++|++..... .....+.+..++..+.+.+-+++||.|.
T Consensus 84 ~~~i~liDtPG~~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~~i~~iiVVlNK~Dl 151 (411)
T PRK04000 84 LRRVSFVDAPGHETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDIIGIKNIVIVQNKIDL 151 (411)
T ss_pred ccEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEEeecc
Confidence 467899999963221112233333579999999987532 3444555566666676645688899884
No 462
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=93.91 E-value=0.3 Score=34.97 Aligned_cols=67 Identities=15% Similarity=0.139 Sum_probs=42.0
Q ss_pred CCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCchh-hHHHHHHHHHHhhh----CCCCeeEEEEccccC
Q 028600 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDV-ALIDARKGITMFSK----VQVPVCSFLAQIISS 205 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~~-~~~~~~~~l~~l~~----~~~~~~g~v~N~~~~ 205 (207)
.++.+.++|+|+..............+|.+++|++.... ++......+..+.+ .+.++ -+++||.|.
T Consensus 48 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~-ilv~NK~D~ 119 (167)
T cd04160 48 GNARLKFWDLGGQESLRSLWDKYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPL-LILANKQDL 119 (167)
T ss_pred CCEEEEEEECCCChhhHHHHHHHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCE-EEEEEcccc
Confidence 467899999996332222223445578999999987653 34444444444332 35665 589999984
No 463
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=93.89 E-value=0.044 Score=39.51 Aligned_cols=25 Identities=40% Similarity=0.392 Sum_probs=22.6
Q ss_pred CCCcHHHHHHHHHHHHHHhCCCeEEEEecCC
Q 028600 41 GGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (207)
Q Consensus 41 gG~GkTt~a~~LA~~la~~~g~~VlliD~d~ 71 (207)
.|+||||++..||..|.. -++|+|.
T Consensus 1 ~GsGKStvg~~lA~~L~~------~fiD~D~ 25 (158)
T PF01202_consen 1 MGSGKSTVGKLLAKRLGR------PFIDLDD 25 (158)
T ss_dssp TTSSHHHHHHHHHHHHTS------EEEEHHH
T ss_pred CCCcHHHHHHHHHHHhCC------CccccCH
Confidence 499999999999998888 7899986
No 464
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=93.89 E-value=0.097 Score=43.86 Aligned_cols=67 Identities=10% Similarity=0.128 Sum_probs=43.5
Q ss_pred CCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCchhh-HHHHHHHHHHhhhCCCCeeEEEEccccC
Q 028600 139 NLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVA-LIDARKGITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 139 ~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~~~-~~~~~~~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
.+.+.++|+|+--............+|.+++|+++.... ...+.+.+..+...+.+.+-+++||.|.
T Consensus 79 ~~~i~liDtPGh~~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~gi~~iIVvvNK~Dl 146 (406)
T TIGR03680 79 LRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIGIKNIVIVQNKIDL 146 (406)
T ss_pred ccEEEEEECCCHHHHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcCCCeEEEEEEcccc
Confidence 467899999963111112233344579999999988533 3455566666677776655688999884
No 465
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=93.89 E-value=0.15 Score=38.53 Aligned_cols=35 Identities=34% Similarity=0.355 Sum_probs=25.7
Q ss_pred CCCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCC
Q 028600 29 GVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (207)
Q Consensus 29 ~~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~ 71 (207)
+...+|+++ +..|+||||++..|+. .|. .++|+|.
T Consensus 3 ~~~~~igit-G~igsGKSt~~~~l~~-----~g~--~v~d~D~ 37 (208)
T PRK14731 3 SLPFLVGVT-GGIGSGKSTVCRFLAE-----MGC--ELFEADR 37 (208)
T ss_pred CCCEEEEEE-CCCCCCHHHHHHHHHH-----CCC--eEEeccH
Confidence 345678885 8889999999888764 465 4577773
No 466
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=93.87 E-value=0.1 Score=44.36 Aligned_cols=63 Identities=19% Similarity=0.202 Sum_probs=49.7
Q ss_pred CCCEEEEcCCCCCCcchhhhhh---hhcCceEEEeeCCchhhHHHHHHHHHHhhhCCCCeeEEEEccccC
Q 028600 139 NLDILVIDMPPGTGDAQLTTTQ---TLQLSGALIVSTPQDVALIDARKGITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 139 ~~D~IiiD~~~~~~~~~~~~~~---~~~~d~vi~v~~~~~~~~~~~~~~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
.--+.++|||+= ..|+... ...+|-+|+|+..+..-+.++.+.++.++..+.|++ +.+||.|+
T Consensus 54 ~~~itFiDTPGH---eAFt~mRaRGa~vtDIaILVVa~dDGv~pQTiEAI~hak~a~vP~i-VAiNKiDk 119 (509)
T COG0532 54 IPGITFIDTPGH---EAFTAMRARGASVTDIAILVVAADDGVMPQTIEAINHAKAAGVPIV-VAINKIDK 119 (509)
T ss_pred CceEEEEcCCcH---HHHHHHHhcCCccccEEEEEEEccCCcchhHHHHHHHHHHCCCCEE-EEEecccC
Confidence 356899999951 1222221 124899999999999999999999999999999984 88999986
No 467
>PRK03839 putative kinase; Provisional
Probab=93.86 E-value=0.075 Score=39.05 Aligned_cols=30 Identities=40% Similarity=0.529 Sum_probs=22.0
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecC
Q 028600 34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70 (207)
Q Consensus 34 I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d 70 (207)
|.+ .+.+|+||||++..||..+.- -++|+|
T Consensus 3 I~l-~G~pGsGKsT~~~~La~~~~~------~~id~d 32 (180)
T PRK03839 3 IAI-TGTPGVGKTTVSKLLAEKLGY------EYVDLT 32 (180)
T ss_pred EEE-ECCCCCCHHHHHHHHHHHhCC------cEEehh
Confidence 555 488899999999888886533 446665
No 468
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=93.86 E-value=0.19 Score=36.99 Aligned_cols=67 Identities=15% Similarity=0.275 Sum_probs=40.6
Q ss_pred CCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCchh-hHHHHHHHHHHhhh----CCCCeeEEEEccccC
Q 028600 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDV-ALIDARKGITMFSK----VQVPVCSFLAQIISS 205 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~~-~~~~~~~~l~~l~~----~~~~~~g~v~N~~~~ 205 (207)
.++.+.++|+|+.......-......+|.+++|++.... ++......+..+.+ .+.++ -+|+|+.|.
T Consensus 59 ~~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~pi-liv~NK~Dl 130 (184)
T smart00178 59 GNIKFTTFDLGGHQQARRLWKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPF-LILGNKIDA 130 (184)
T ss_pred CCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCE-EEEEeCccc
Confidence 457789999996432212223334578999999887543 34455444444322 34554 689999884
No 469
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=93.85 E-value=0.098 Score=44.34 Aligned_cols=37 Identities=22% Similarity=0.223 Sum_probs=31.8
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecC
Q 028600 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70 (207)
Q Consensus 32 k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d 70 (207)
.-+.++ +..|+|||+++..+|..+.+ .|.+|++++++
T Consensus 142 npl~L~-G~~G~GKTHLl~Ai~~~l~~-~~~~v~yi~~~ 178 (445)
T PRK12422 142 NPIYLF-GPEGSGKTHLMQAAVHALRE-SGGKILYVRSE 178 (445)
T ss_pred ceEEEE-cCCCCCHHHHHHHHHHHHHH-cCCCEEEeeHH
Confidence 345554 67899999999999999998 89999999875
No 470
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=93.81 E-value=0.1 Score=43.61 Aligned_cols=36 Identities=17% Similarity=0.249 Sum_probs=30.6
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHhC--CCeEEEEecC
Q 028600 33 VIAVASGKGGVGKSTTAVNLAVALASKC--QLKVGLLDAD 70 (207)
Q Consensus 33 ~I~v~s~kgG~GkTt~a~~LA~~la~~~--g~~VlliD~d 70 (207)
.+.+ .+..|+|||+++..+|..+.+ . |.+|+.++++
T Consensus 138 ~l~l-~G~~G~GKThL~~ai~~~l~~-~~~~~~v~yi~~~ 175 (405)
T TIGR00362 138 PLFI-YGGVGLGKTHLLHAIGNEILE-NNPNAKVVYVSSE 175 (405)
T ss_pred eEEE-ECCCCCcHHHHHHHHHHHHHH-hCCCCcEEEEEHH
Confidence 4444 699999999999999999987 5 7899999875
No 471
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=93.78 E-value=0.087 Score=40.93 Aligned_cols=36 Identities=28% Similarity=0.326 Sum_probs=26.6
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~ 73 (207)
|.+|++| +.-|+||||++..|+.. .|.+ +||+|.-.
T Consensus 1 M~iIGlT-GgIgSGKStVs~~L~~~----~G~~--viDaD~ia 36 (244)
T PTZ00451 1 MILIGLT-GGIACGKSTVSRILREE----HHIE--VIDADLVV 36 (244)
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHH----cCCe--EEehHHHH
Confidence 4678886 77899999998887652 2554 58998744
No 472
>PRK13948 shikimate kinase; Provisional
Probab=93.78 E-value=0.084 Score=39.13 Aligned_cols=34 Identities=35% Similarity=0.436 Sum_probs=25.2
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~ 71 (207)
+..|.+ .+-.|+||||++..||..+ |. -+||+|.
T Consensus 10 ~~~I~L-iG~~GsGKSTvg~~La~~l----g~--~~iD~D~ 43 (182)
T PRK13948 10 VTWVAL-AGFMGTGKSRIGWELSRAL----ML--HFIDTDR 43 (182)
T ss_pred CCEEEE-ECCCCCCHHHHHHHHHHHc----CC--CEEECCH
Confidence 445555 4888999999999988865 43 3569984
No 473
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=93.77 E-value=0.12 Score=45.94 Aligned_cols=34 Identities=29% Similarity=0.363 Sum_probs=30.2
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEe
Q 028600 34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLD 68 (207)
Q Consensus 34 I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD 68 (207)
+.+..+.+|+|||++++.+...+.+ .|.+|++.-
T Consensus 175 ~~lI~GpPGTGKT~t~~~ii~~~~~-~g~~VLv~a 208 (637)
T TIGR00376 175 LFLIHGPPGTGKTRTLVELIRQLVK-RGLRVLVTA 208 (637)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHH-cCCCEEEEc
Confidence 5566899999999999999999998 899999874
No 474
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=93.75 E-value=0.34 Score=34.35 Aligned_cols=66 Identities=17% Similarity=0.160 Sum_probs=43.1
Q ss_pred CCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCchh-hHHHHHHHHHHhhh----CCCCeeEEEEccccC
Q 028600 139 NLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDV-ALIDARKGITMFSK----VQVPVCSFLAQIISS 205 (207)
Q Consensus 139 ~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~~-~~~~~~~~l~~l~~----~~~~~~g~v~N~~~~ 205 (207)
.+++.++|+|+...........+..+|.+++|.++... ++..+...+..+.+ .+.++ -++.||.|.
T Consensus 42 ~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~pi-iiv~nK~D~ 112 (158)
T cd00878 42 NVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPL-LIFANKQDL 112 (158)
T ss_pred CEEEEEEECCCChhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcE-EEEeeccCC
Confidence 57899999997533223334445578999999998765 55555555544433 34454 578899884
No 475
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=93.68 E-value=0.092 Score=38.75 Aligned_cols=17 Identities=53% Similarity=0.591 Sum_probs=15.5
Q ss_pred CCCCCcHHHHHHHHHHH
Q 028600 39 GKGGVGKSTTAVNLAVA 55 (207)
Q Consensus 39 ~kgG~GkTt~a~~LA~~ 55 (207)
+-+|+||||.|..||..
T Consensus 7 G~pGaGK~T~A~~La~~ 23 (178)
T COG0563 7 GPPGAGKSTLAKKLAKK 23 (178)
T ss_pred CCCCCCHHHHHHHHHHH
Confidence 78899999999999886
No 476
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=93.68 E-value=0.11 Score=43.84 Aligned_cols=68 Identities=13% Similarity=0.112 Sum_probs=41.0
Q ss_pred CCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCchh---hHHHHHHHHHHhhhCCCCeeEEEEccccC
Q 028600 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDV---ALIDARKGITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~~---~~~~~~~~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
..+.+.|+|+|+.-.........+..+|.+++|++.... ........+......+.+.+-+++||.|.
T Consensus 83 ~~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~~~~iIVviNK~Dl 153 (426)
T TIGR00483 83 DKYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLGINQLIVAINKMDS 153 (426)
T ss_pred CCeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcCCCeEEEEEEChhc
Confidence 567899999996211101122334468999999888765 22233333344445565555688999884
No 477
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=93.68 E-value=0.094 Score=38.40 Aligned_cols=26 Identities=35% Similarity=0.466 Sum_probs=20.5
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHH
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALA 57 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la 57 (207)
+++|.+ ++-+|+||||++..|+..+.
T Consensus 2 ~~~i~l-~G~~gsGKst~a~~l~~~~~ 27 (175)
T cd00227 2 GRIIIL-NGGSSAGKSSIARALQSVLA 27 (175)
T ss_pred CCEEEE-ECCCCCCHHHHHHHHHHhhC
Confidence 455555 79999999999999987653
No 478
>PRK12338 hypothetical protein; Provisional
Probab=93.65 E-value=0.082 Score=42.63 Aligned_cols=37 Identities=38% Similarity=0.537 Sum_probs=26.0
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~ 73 (207)
+.+|.+ ++.+|+||||+|..||..+ |.+. ++..|.-.
T Consensus 4 p~ii~i-~G~sGsGKST~a~~la~~l----~~~~-~~~tD~~r 40 (319)
T PRK12338 4 PYVILI-GSASGIGKSTIASELARTL----NIKH-LIETDFIR 40 (319)
T ss_pred cEEEEE-ECCCCCCHHHHHHHHHHHC----CCeE-EccChHHH
Confidence 445555 7899999999999998865 4443 55556533
No 479
>PRK13946 shikimate kinase; Provisional
Probab=93.63 E-value=0.07 Score=39.47 Aligned_cols=34 Identities=44% Similarity=0.578 Sum_probs=25.8
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~ 71 (207)
.+.|.++ +..|+||||++..||..| |.+ ++|.|.
T Consensus 10 ~~~I~l~-G~~GsGKsti~~~LA~~L----g~~--~id~D~ 43 (184)
T PRK13946 10 KRTVVLV-GLMGAGKSTVGRRLATML----GLP--FLDADT 43 (184)
T ss_pred CCeEEEE-CCCCCCHHHHHHHHHHHc----CCC--eECcCH
Confidence 4566664 779999999999999866 444 677774
No 480
>PRK14530 adenylate kinase; Provisional
Probab=93.63 E-value=0.097 Score=39.74 Aligned_cols=25 Identities=36% Similarity=0.489 Sum_probs=20.1
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHH
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVAL 56 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~l 56 (207)
.+.|.|+ +.+|+||||++..||..+
T Consensus 3 ~~~I~i~-G~pGsGKsT~~~~La~~~ 27 (215)
T PRK14530 3 QPRILLL-GAPGAGKGTQSSNLAEEF 27 (215)
T ss_pred CCEEEEE-CCCCCCHHHHHHHHHHHh
Confidence 3456664 888999999999998765
No 481
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=93.62 E-value=0.086 Score=40.91 Aligned_cols=35 Identities=37% Similarity=0.556 Sum_probs=25.8
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCC
Q 028600 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (207)
Q Consensus 32 k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~ 71 (207)
..|.+.++..|+||||+|..+|.-| |-+ -+|..|.
T Consensus 89 p~IILIGGasGVGkStIA~ElA~rL----gI~-~visTD~ 123 (299)
T COG2074 89 PLIILIGGASGVGKSTIAGELARRL----GIR-SVISTDS 123 (299)
T ss_pred CeEEEecCCCCCChhHHHHHHHHHc----CCc-eeecchH
Confidence 4666679999999999999999844 433 3455554
No 482
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=93.59 E-value=0.074 Score=38.35 Aligned_cols=30 Identities=37% Similarity=0.434 Sum_probs=22.8
Q ss_pred EeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCC
Q 028600 37 ASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (207)
Q Consensus 37 ~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~ 72 (207)
..+..|+||||++..|+..+ | ..++|.|..
T Consensus 3 l~G~~GsGKSTla~~l~~~l----~--~~~v~~D~~ 32 (163)
T TIGR01313 3 LMGVAGSGKSTIASALAHRL----G--AKFIEGDDL 32 (163)
T ss_pred EECCCCCCHHHHHHHHHHhc----C--CeEEeCccc
Confidence 35889999999999999865 3 355777653
No 483
>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....
Probab=93.59 E-value=0.12 Score=38.19 Aligned_cols=31 Identities=29% Similarity=0.165 Sum_probs=25.3
Q ss_pred CCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCC
Q 028600 40 KGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (207)
Q Consensus 40 kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~ 72 (207)
--|+||||.+..|+.+|.. .|.+ .++...+.
T Consensus 4 iDGsGKtT~~~~L~~~l~~-~~~~-~~~~~~~~ 34 (186)
T PF02223_consen 4 IDGSGKTTQIRLLAEALKE-KGYK-VIITFPPG 34 (186)
T ss_dssp STTSSHHHHHHHHHHHHHH-TTEE-EEEEESST
T ss_pred CCCCCHHHHHHHHHHHHHH-cCCc-ccccCCCC
Confidence 4699999999999999999 9999 55544443
No 484
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=93.58 E-value=0.061 Score=39.32 Aligned_cols=27 Identities=44% Similarity=0.482 Sum_probs=23.0
Q ss_pred CCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCC
Q 028600 39 GKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (207)
Q Consensus 39 ~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~ 71 (207)
+--|+||||+...||..|.. -++|.|.
T Consensus 9 G~mGaGKSTIGr~LAk~L~~------~F~D~D~ 35 (172)
T COG0703 9 GFMGAGKSTIGRALAKALNL------PFIDTDQ 35 (172)
T ss_pred cCCCCCHhHHHHHHHHHcCC------CcccchH
Confidence 77799999999999998777 5788875
No 485
>PRK02496 adk adenylate kinase; Provisional
Probab=93.48 E-value=0.11 Score=38.32 Aligned_cols=24 Identities=42% Similarity=0.462 Sum_probs=19.0
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 028600 33 VIAVASGKGGVGKSTTAVNLAVALA 57 (207)
Q Consensus 33 ~I~v~s~kgG~GkTt~a~~LA~~la 57 (207)
.|.|. +.+|+||||++..||..+.
T Consensus 3 ~i~i~-G~pGsGKst~a~~la~~~~ 26 (184)
T PRK02496 3 RLIFL-GPPGAGKGTQAVVLAEHLH 26 (184)
T ss_pred EEEEE-CCCCCCHHHHHHHHHHHhC
Confidence 35554 6799999999999988663
No 486
>PRK14531 adenylate kinase; Provisional
Probab=93.47 E-value=0.12 Score=38.26 Aligned_cols=25 Identities=32% Similarity=0.411 Sum_probs=19.7
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHH
Q 028600 32 DVIAVASGKGGVGKSTTAVNLAVALA 57 (207)
Q Consensus 32 k~I~v~s~kgG~GkTt~a~~LA~~la 57 (207)
+.|.+ -+.+|+||||++..||..+.
T Consensus 3 ~~i~i-~G~pGsGKsT~~~~la~~~g 27 (183)
T PRK14531 3 QRLLF-LGPPGAGKGTQAARLCAAHG 27 (183)
T ss_pred cEEEE-ECCCCCCHHHHHHHHHHHhC
Confidence 34555 48899999999999988653
No 487
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=93.46 E-value=0.25 Score=42.55 Aligned_cols=62 Identities=16% Similarity=0.193 Sum_probs=49.7
Q ss_pred CCCCEEEEcCCCCCCcchhhhhhhh-----cCceEEEeeCCchhhHHHHHHHHHHhhhCCCCeeEEEEccccC
Q 028600 138 GNLDILVIDMPPGTGDAQLTTTQTL-----QLSGALIVSTPQDVALIDARKGITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~~~~~~~~-----~~d~vi~v~~~~~~~~~~~~~~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
.+--+.++|||+ ... +.+|+ .+|-+|+|+.++..-+.++.+.|+..+..+.+++ +-+|+.|+
T Consensus 199 ~G~~iTFLDTPG---HaA--F~aMRaRGA~vtDIvVLVVAadDGVmpQT~EaIkhAk~A~VpiV-vAinKiDk 265 (683)
T KOG1145|consen 199 SGKSITFLDTPG---HAA--FSAMRARGANVTDIVVLVVAADDGVMPQTLEAIKHAKSANVPIV-VAINKIDK 265 (683)
T ss_pred CCCEEEEecCCc---HHH--HHHHHhccCccccEEEEEEEccCCccHhHHHHHHHHHhcCCCEE-EEEeccCC
Confidence 456789999995 212 23332 3789999999999999999999999999999984 88899985
No 488
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=93.43 E-value=0.13 Score=45.25 Aligned_cols=67 Identities=12% Similarity=0.183 Sum_probs=54.7
Q ss_pred CCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCchhhHHHHHHHHHHhhhCCCCeeEEEEccccC
Q 028600 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~~~~~~~~~~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
+.|=+-|+|+|+-.+...-..+++..+|++++|++....-+-.+.++|++.-+...++ -+++|++|+
T Consensus 195 KS~l~nilDTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq~~~~i-~vviNKiDR 261 (971)
T KOG0468|consen 195 KSYLMNILDTPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQNRLPI-VVVINKVDR 261 (971)
T ss_pred ceeeeeeecCCCcccchHHHHHHhhhcceEEEEEEcccCceeeHHHHHHHHHhccCcE-EEEEehhHH
Confidence 5678889999985443344456677899999999999988889999999988888887 699999885
No 489
>PLN02422 dephospho-CoA kinase
Probab=93.41 E-value=0.16 Score=39.22 Aligned_cols=35 Identities=29% Similarity=0.352 Sum_probs=26.4
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~ 73 (207)
|++|+++ +..|+||||++..|+ + .|.. ++|+|--.
T Consensus 1 M~~iglt-G~igsGKstv~~~l~----~-~g~~--~idaD~~~ 35 (232)
T PLN02422 1 MRVVGLT-GGIASGKSTVSNLFK----S-SGIP--VVDADKVA 35 (232)
T ss_pred CeEEEEE-CCCCCCHHHHHHHHH----H-CCCe--EEehhHHH
Confidence 3578885 788999999998887 3 5665 58888643
No 490
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=93.40 E-value=0.47 Score=33.71 Aligned_cols=66 Identities=12% Similarity=0.046 Sum_probs=39.6
Q ss_pred CCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCch-hhHHHHHHHHHHhhh----CCCCeeEEEEccccC
Q 028600 139 NLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDARKGITMFSK----VQVPVCSFLAQIISS 205 (207)
Q Consensus 139 ~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~-~~~~~~~~~l~~l~~----~~~~~~g~v~N~~~~ 205 (207)
.+.+.|+|+|+...........+..+|.+++|.+... .+...+...++.+.+ .+.++ -++.||.|.
T Consensus 49 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~pi-iiv~NK~Dl 119 (164)
T cd04145 49 WAILDILDTAGQEEFSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPM-ILVGNKADL 119 (164)
T ss_pred EEEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCE-EEEeeCccc
Confidence 3567789998643322333344557888888877654 345555555444433 24555 578899873
No 491
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=93.39 E-value=0.36 Score=35.97 Aligned_cols=65 Identities=11% Similarity=0.092 Sum_probs=40.9
Q ss_pred CCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCch-hhHHHHHHHHHHhhh----CCCCeeEEEEccccC
Q 028600 140 LDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDARKGITMFSK----VQVPVCSFLAQIISS 205 (207)
Q Consensus 140 ~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~-~~~~~~~~~l~~l~~----~~~~~~g~v~N~~~~ 205 (207)
+.+.|+|+++..............+|.+++|.+... .+.+.+...+..+.+ .+.++ -+|.|+.|.
T Consensus 47 ~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi-ilv~NK~Dl 116 (198)
T cd04147 47 LTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPI-VVVGNKADS 116 (198)
T ss_pred EEEEEEECCCchhhhHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcE-EEEEEcccc
Confidence 567899999643322222233457899999988754 355666555544443 34555 588899884
No 492
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=93.38 E-value=0.093 Score=37.21 Aligned_cols=65 Identities=8% Similarity=-0.007 Sum_probs=35.2
Q ss_pred CCCCEEEEcCCCC--CCcchhhhhhhhcCceEEEeeC-Cchh-hHHHHHHHHHHhhhCCCCeeEEEEcccc
Q 028600 138 GNLDILVIDMPPG--TGDAQLTTTQTLQLSGALIVST-PQDV-ALIDARKGITMFSKVQVPVCSFLAQIIS 204 (207)
Q Consensus 138 ~~~D~IiiD~~~~--~~~~~~~~~~~~~~d~vi~v~~-~~~~-~~~~~~~~l~~l~~~~~~~~g~v~N~~~ 204 (207)
.+-|+|++=.++. .+.....+..++.. .||-|++ .+.. +-.++.+..++|+..|.+-+ +.++-+.
T Consensus 62 ~dad~V~ll~dat~~~~~~pP~fa~~f~~-pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~~~i-f~vS~~~ 130 (143)
T PF10662_consen 62 QDADVVLLLQDATEPRSVFPPGFASMFNK-PVIGVITKIDLPSDDANIERAKKWLKNAGVKEI-FEVSAVT 130 (143)
T ss_pred hhCCEEEEEecCCCCCccCCchhhcccCC-CEEEEEECccCccchhhHHHHHHHHHHcCCCCe-EEEECCC
Confidence 5677776544332 22111222233233 4555544 4443 36788888889998888865 5555443
No 493
>PRK14527 adenylate kinase; Provisional
Probab=93.32 E-value=0.13 Score=38.30 Aligned_cols=27 Identities=37% Similarity=0.468 Sum_probs=21.8
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHH
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALAS 58 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~ 58 (207)
+++|.|+ +.+|+||||++..||..+..
T Consensus 6 ~~~i~i~-G~pGsGKsT~a~~La~~~~~ 32 (191)
T PRK14527 6 NKVVIFL-GPPGAGKGTQAERLAQELGL 32 (191)
T ss_pred CcEEEEE-CCCCCCHHHHHHHHHHHhCC
Confidence 6777775 66999999999999876643
No 494
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=93.32 E-value=0.23 Score=34.68 Aligned_cols=32 Identities=31% Similarity=0.284 Sum_probs=26.2
Q ss_pred eCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCC
Q 028600 38 SGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (207)
Q Consensus 38 s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~ 73 (207)
-+..|+|||+++..+|+.+ +.++..+.+....
T Consensus 5 ~G~~G~GKt~l~~~la~~~----~~~~~~i~~~~~~ 36 (139)
T PF07728_consen 5 VGPPGTGKTTLARELAALL----GRPVIRINCSSDT 36 (139)
T ss_dssp EESSSSSHHHHHHHHHHHH----TCEEEEEE-TTTS
T ss_pred ECCCCCCHHHHHHHHHHHh----hcceEEEEecccc
Confidence 4788999999999999988 6788888777654
No 495
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=93.31 E-value=0.25 Score=43.46 Aligned_cols=64 Identities=16% Similarity=0.149 Sum_probs=46.3
Q ss_pred CEEEEcCCCCC---CcchhhhhhhhcCceEEEeeCCchhhHHHHHHHHHHhhhCCCCeeEEEEccccC
Q 028600 141 DILVIDMPPGT---GDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 141 D~IiiD~~~~~---~~~~~~~~~~~~~d~vi~v~~~~~~~~~~~~~~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
|++++|.|+.- ....+.......+|.+|+|++++.+=.....+++....+- .+-+.+|.||+|.
T Consensus 207 DivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~sek~Ff~~vs~~-KpniFIlnnkwDa 273 (749)
T KOG0448|consen 207 DIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSEKQFFHKVSEE-KPNIFILNNKWDA 273 (749)
T ss_pred cceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHHHHHHHHhhcc-CCcEEEEechhhh
Confidence 99999999631 1223445555579999999999887666666666665544 5667899999885
No 496
>PRK07429 phosphoribulokinase; Provisional
Probab=93.30 E-value=0.17 Score=41.14 Aligned_cols=36 Identities=31% Similarity=0.375 Sum_probs=27.0
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d 70 (207)
.-+|+| .+..|+||||++..|+..+.. .+ +.++.+|
T Consensus 8 ~~IIgI-~G~SGSGKSTla~~L~~ll~~-~~--~~vi~~D 43 (327)
T PRK07429 8 PVLLGV-AGDSGCGKTTFLRGLADLLGE-EL--VTVICTD 43 (327)
T ss_pred CEEEEE-ECCCCCCHHHHHHHHHhHhcc-Cc--eEEEEec
Confidence 557777 588999999999999988765 43 4455554
No 497
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=93.24 E-value=0.21 Score=34.09 Aligned_cols=32 Identities=22% Similarity=0.190 Sum_probs=25.3
Q ss_pred EEeCCCCCcHHHHHHHHHHHHHHh-CCCeEEEE
Q 028600 36 VASGKGGVGKSTTAVNLAVALASK-CQLKVGLL 67 (207)
Q Consensus 36 v~s~kgG~GkTt~a~~LA~~la~~-~g~~Vlli 67 (207)
+.....|+|||+++..++..+... .+.+++++
T Consensus 4 ~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~ 36 (144)
T cd00046 4 LLAAPTGSGKTLAALLPILELLDSLKGGQVLVL 36 (144)
T ss_pred EEECCCCCchhHHHHHHHHHHHhcccCCCEEEE
Confidence 446899999999999999999873 23566666
No 498
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=93.22 E-value=0.15 Score=46.89 Aligned_cols=35 Identities=26% Similarity=0.340 Sum_probs=32.1
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEE
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLL 67 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~Vlli 67 (207)
++.+++. +..|+||||.-+.+|..+|. +|+|+.+|
T Consensus 97 g~SFaii-APTGvGKTTfg~~~sl~~a~-kgkr~yii 131 (1187)
T COG1110 97 GKSFAII-APTGVGKTTFGLLMSLYLAK-KGKRVYII 131 (1187)
T ss_pred CCceEEE-cCCCCchhHHHHHHHHHHHh-cCCeEEEE
Confidence 6778884 78899999999999999999 99999998
No 499
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=93.22 E-value=0.45 Score=34.68 Aligned_cols=67 Identities=15% Similarity=0.083 Sum_probs=43.0
Q ss_pred CCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCch-hhHHHHHHHHHHhhhC----CCCeeEEEEccccC
Q 028600 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDARKGITMFSKV----QVPVCSFLAQIISS 205 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~-~~~~~~~~~l~~l~~~----~~~~~g~v~N~~~~ 205 (207)
..+.+.+.|+|+..............+|.+|+|.+... .+++.+.+.+..+.+. +.+ +-+|.|+.|-
T Consensus 55 ~~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~p-iilv~NK~Dl 126 (175)
T smart00177 55 KNISFTVWDVGGQDKIRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAV-ILVFANKQDL 126 (175)
T ss_pred CCEEEEEEECCCChhhHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCc-EEEEEeCcCc
Confidence 45778999999643322222233457999999988764 4566666666554321 334 4789999883
No 500
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=93.20 E-value=0.15 Score=43.26 Aligned_cols=35 Identities=17% Similarity=0.181 Sum_probs=30.4
Q ss_pred EEeCCCCCcHHHHHHHHHHHHHHhC--CCeEEEEecCC
Q 028600 36 VASGKGGVGKSTTAVNLAVALASKC--QLKVGLLDADV 71 (207)
Q Consensus 36 v~s~kgG~GkTt~a~~LA~~la~~~--g~~VlliD~d~ 71 (207)
+..+..|+|||+++..+|..+.+ . +.+|+.+.++.
T Consensus 152 ~l~G~~G~GKThL~~ai~~~~~~-~~~~~~v~yi~~~~ 188 (450)
T PRK00149 152 FIYGGVGLGKTHLLHAIGNYILE-KNPNAKVVYVTSEK 188 (450)
T ss_pred EEECCCCCCHHHHHHHHHHHHHH-hCCCCeEEEEEHHH
Confidence 44699999999999999999988 6 78999998763
Done!