Query 028600
Match_columns 207
No_of_seqs 111 out of 1293
Neff 9.8
Searched_HMMs 29240
Date Mon Mar 25 23:33:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028600.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028600hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3la6_A Tyrosine-protein kinase 100.0 1.5E-34 5E-39 227.7 8.3 188 6-205 71-266 (286)
2 3bfv_A CAPA1, CAPB2, membrane 100.0 6.5E-34 2.2E-38 222.6 7.1 189 5-205 60-256 (271)
3 2ph1_A Nucleotide-binding prot 100.0 2.4E-31 8.1E-36 207.3 17.5 179 25-204 12-193 (262)
4 3cio_A ETK, tyrosine-protein k 100.0 4.6E-33 1.6E-37 220.7 7.1 188 7-206 84-279 (299)
5 3ea0_A ATPase, para family; al 100.0 3.9E-30 1.3E-34 198.2 14.4 168 29-206 2-185 (245)
6 3q9l_A Septum site-determining 100.0 8.1E-29 2.8E-33 192.4 16.3 165 30-205 1-185 (260)
7 1g3q_A MIND ATPase, cell divis 100.0 8.6E-29 3E-33 189.8 14.3 165 30-205 1-175 (237)
8 3pg5_A Uncharacterized protein 100.0 9.2E-29 3.1E-33 200.9 13.3 171 31-205 1-254 (361)
9 1hyq_A MIND, cell division inh 100.0 1.9E-28 6.4E-33 190.8 14.2 165 30-205 1-174 (263)
10 3kjh_A CO dehydrogenase/acetyl 100.0 3.9E-28 1.3E-32 187.4 14.5 164 33-205 2-195 (254)
11 3end_A Light-independent proto 100.0 2.9E-27 1E-31 188.1 18.9 180 13-205 27-225 (307)
12 3k9g_A PF-32 protein; ssgcid, 100.0 6.5E-28 2.2E-32 188.2 12.6 170 29-205 25-209 (267)
13 4dzz_A Plasmid partitioning pr 100.0 3.3E-27 1.1E-31 177.2 15.0 137 31-205 1-142 (206)
14 1wcv_1 SOJ, segregation protei 99.9 5.1E-28 1.8E-32 188.0 10.7 165 30-205 5-181 (257)
15 1cp2_A CP2, nitrogenase iron p 99.9 7.3E-27 2.5E-31 182.4 14.7 171 31-205 1-186 (269)
16 2afh_E Nitrogenase iron protei 99.9 9.5E-27 3.3E-31 183.7 15.1 171 31-205 2-189 (289)
17 3ug7_A Arsenical pump-driving 99.9 6.1E-27 2.1E-31 189.3 11.3 194 5-204 3-277 (349)
18 2oze_A ORF delta'; para, walke 99.9 1.3E-26 4.6E-31 183.5 12.5 170 31-205 34-224 (298)
19 3fwy_A Light-independent proto 99.9 1.5E-25 5.1E-30 178.3 17.9 169 30-205 47-232 (314)
20 3ez9_A Para; DNA binding, wing 99.9 1.2E-25 4.2E-30 185.1 12.2 174 27-205 107-322 (403)
21 3ez2_A Plasmid partition prote 99.9 1.3E-25 4.6E-30 184.6 10.8 170 27-200 104-312 (398)
22 3fkq_A NTRC-like two-domain pr 99.9 3.2E-25 1.1E-29 180.8 12.6 163 28-202 140-321 (373)
23 2xj4_A MIPZ; replication, cell 99.9 4.1E-26 1.4E-30 179.9 6.8 163 30-206 3-191 (286)
24 3cwq_A Para family chromosome 99.9 6.8E-25 2.3E-29 165.4 12.6 131 32-206 1-133 (209)
25 2woj_A ATPase GET3; tail-ancho 99.9 3.8E-25 1.3E-29 178.9 9.6 170 31-204 17-275 (354)
26 3zq6_A Putative arsenical pump 99.9 5.1E-24 1.7E-28 170.6 13.7 172 31-204 13-262 (324)
27 2woo_A ATPase GET3; tail-ancho 99.9 2.7E-24 9.2E-29 172.5 11.7 185 10-204 2-261 (329)
28 3iqw_A Tail-anchored protein t 99.9 8.8E-24 3E-28 169.4 11.7 184 14-204 3-262 (334)
29 3io3_A DEHA2D07832P; chaperone 99.9 5.1E-23 1.7E-27 165.7 9.1 185 13-205 4-272 (348)
30 1byi_A Dethiobiotin synthase; 99.9 3.7E-22 1.3E-26 151.6 10.5 166 32-205 2-179 (224)
31 1ihu_A Arsenical pump-driving 99.8 8.8E-21 3E-25 163.0 9.9 172 31-205 7-239 (589)
32 3igf_A ALL4481 protein; two-do 99.8 2.2E-19 7.4E-24 145.6 12.9 168 32-202 2-252 (374)
33 1ihu_A Arsenical pump-driving 99.8 3.5E-20 1.2E-24 159.3 8.1 175 29-205 324-531 (589)
34 2xxa_A Signal recognition part 99.8 4.8E-18 1.7E-22 140.4 12.7 149 29-206 98-253 (433)
35 1j8m_F SRP54, signal recogniti 99.7 1E-16 3.5E-21 126.5 12.0 146 31-205 98-251 (297)
36 1zu4_A FTSY; GTPase, signal re 99.7 1.5E-16 5.1E-21 126.8 12.3 151 30-205 104-266 (320)
37 1ls1_A Signal recognition part 99.7 7.6E-16 2.6E-20 121.5 12.0 147 30-205 97-249 (295)
38 3of5_A Dethiobiotin synthetase 99.6 7E-16 2.4E-20 117.3 9.7 165 30-205 3-181 (228)
39 3qxc_A Dethiobiotin synthetase 99.6 4E-15 1.4E-19 113.9 13.2 172 26-206 16-202 (242)
40 2ffh_A Protein (FFH); SRP54, s 99.6 1.6E-15 5.6E-20 124.6 11.6 147 30-205 97-249 (425)
41 3fgn_A Dethiobiotin synthetase 99.6 1.8E-14 6E-19 110.9 15.4 161 30-204 25-197 (251)
42 1yrb_A ATP(GTP)binding protein 99.6 2.7E-15 9.1E-20 116.2 9.9 159 28-205 10-183 (262)
43 3dm5_A SRP54, signal recogniti 99.6 9.7E-15 3.3E-19 120.3 11.8 148 30-206 99-252 (443)
44 2v3c_C SRP54, signal recogniti 99.6 2.7E-14 9.2E-19 118.0 13.4 145 31-205 99-250 (432)
45 2j37_W Signal recognition part 99.5 2.3E-14 7.8E-19 120.2 10.5 148 29-205 99-252 (504)
46 2px0_A Flagellar biosynthesis 99.5 1.1E-12 3.6E-17 103.5 12.9 142 30-205 104-251 (296)
47 1vma_A Cell division protein F 99.4 1.2E-12 3.9E-17 103.6 12.5 147 29-205 102-261 (306)
48 3kl4_A SRP54, signal recogniti 99.4 5E-13 1.7E-17 110.1 10.2 147 30-205 96-250 (433)
49 3p32_A Probable GTPase RV1496/ 99.3 8.5E-12 2.9E-16 100.8 8.0 152 29-205 77-229 (355)
50 2r8r_A Sensor protein; KDPD, P 99.1 9.9E-11 3.4E-15 88.0 5.9 45 30-75 4-48 (228)
51 2p67_A LAO/AO transport system 99.0 1.6E-09 5.4E-14 87.0 10.0 151 30-205 55-206 (341)
52 3pzx_A Formate--tetrahydrofola 98.9 9.6E-10 3.3E-14 90.2 5.6 73 9-85 34-110 (557)
53 4a0g_A Adenosylmethionine-8-am 98.7 1.3E-07 4.3E-12 84.2 12.8 66 139-204 201-271 (831)
54 2obn_A Hypothetical protein; s 98.7 1.7E-07 5.9E-12 74.8 12.0 139 31-204 152-310 (349)
55 2yhs_A FTSY, cell division pro 98.7 2.8E-07 9.4E-12 76.9 13.0 42 30-73 292-333 (503)
56 3e70_C DPA, signal recognition 98.7 2.2E-07 7.4E-12 74.1 11.4 147 29-205 127-280 (328)
57 1rj9_A FTSY, signal recognitio 98.3 2.5E-05 8.5E-10 61.5 14.4 43 30-74 101-143 (304)
58 2qm8_A GTPase/ATPase; G protei 98.3 9.4E-06 3.2E-10 64.9 12.0 42 30-73 54-95 (337)
59 2wsm_A Hydrogenase expression/ 98.3 1.3E-06 4.5E-11 65.2 6.6 39 31-72 30-68 (221)
60 2www_A Methylmalonic aciduria 98.3 2E-05 6.8E-10 63.3 13.5 147 31-205 74-224 (349)
61 2h5e_A Peptide chain release f 98.3 2.8E-06 9.6E-11 71.9 8.6 67 138-205 80-146 (529)
62 2rdo_7 EF-G, elongation factor 98.2 5.8E-06 2E-10 72.3 9.3 67 138-205 80-146 (704)
63 2g0t_A Conserved hypothetical 98.1 3.9E-05 1.3E-09 61.3 12.3 136 31-202 169-323 (350)
64 3vqt_A RF-3, peptide chain rel 98.1 1.5E-05 5.1E-10 67.8 8.9 68 138-206 98-165 (548)
65 2og2_A Putative signal recogni 98.1 0.00018 6.2E-09 57.9 14.8 42 30-73 156-197 (359)
66 3b9q_A Chloroplast SRP recepto 98.0 0.00019 6.4E-09 56.4 14.2 42 30-73 99-140 (302)
67 1vco_A CTP synthetase; tetrame 98.0 4.5E-05 1.5E-09 64.5 10.9 167 30-201 11-222 (550)
68 1s1m_A CTP synthase; CTP synth 98.0 9E-05 3.1E-09 62.5 12.4 168 31-201 3-211 (545)
69 2c78_A Elongation factor TU-A; 97.9 5.4E-05 1.8E-09 62.0 9.1 68 138-205 73-140 (405)
70 2xex_A Elongation factor G; GT 97.9 6.1E-05 2.1E-09 65.8 9.7 67 138-205 73-139 (693)
71 1xjc_A MOBB protein homolog; s 97.9 2.7E-05 9.3E-10 55.9 6.1 42 30-73 3-44 (169)
72 1u94_A RECA protein, recombina 97.9 5.6E-05 1.9E-09 60.8 8.4 40 31-72 63-102 (356)
73 1g5t_A COB(I)alamin adenosyltr 97.8 0.00011 3.7E-09 53.9 9.1 39 30-71 28-66 (196)
74 3tr5_A RF-3, peptide chain rel 97.8 5E-06 1.7E-10 70.3 2.1 67 138-205 80-146 (528)
75 3iev_A GTP-binding protein ERA 97.8 0.00025 8.5E-09 55.9 11.2 66 139-205 58-134 (308)
76 1d2e_A Elongation factor TU (E 97.8 5.5E-05 1.9E-09 61.8 7.4 68 138-205 64-131 (397)
77 1xp8_A RECA protein, recombina 97.8 9.1E-05 3.1E-09 59.8 8.2 40 31-72 74-113 (366)
78 1dar_A EF-G, elongation factor 97.7 0.00012 4E-09 64.0 8.9 67 138-205 75-141 (691)
79 2b8t_A Thymidine kinase; deoxy 97.7 0.00032 1.1E-08 52.7 9.5 37 31-69 12-48 (223)
80 2elf_A Protein translation elo 97.6 0.0002 6.9E-09 57.9 8.3 67 138-205 58-125 (370)
81 3j25_A Tetracycline resistance 97.6 0.00011 3.8E-09 63.6 7.2 68 138-206 65-132 (638)
82 4fn5_A EF-G 1, elongation fact 97.6 0.0004 1.4E-08 60.8 10.6 68 138-206 83-150 (709)
83 1wf3_A GTP-binding protein; GT 97.6 0.0007 2.4E-08 53.1 10.6 67 138-205 53-129 (301)
84 3hr8_A Protein RECA; alpha and 97.6 0.00023 7.9E-09 57.2 7.9 41 31-73 61-101 (356)
85 3io5_A Recombination and repai 97.5 0.00087 3E-08 52.9 10.4 37 35-72 31-69 (333)
86 1xx6_A Thymidine kinase; NESG, 97.5 0.00014 4.7E-09 53.3 5.3 36 31-68 8-43 (191)
87 3t1o_A Gliding protein MGLA; G 97.5 0.00083 2.9E-08 48.4 9.2 67 138-205 72-147 (198)
88 1g7s_A Translation initiation 97.5 0.00063 2.2E-08 58.3 9.6 66 139-205 69-134 (594)
89 2zr9_A Protein RECA, recombina 97.5 0.00039 1.3E-08 55.8 7.9 39 31-71 61-99 (349)
90 2lkc_A Translation initiation 97.4 0.00086 2.9E-08 47.6 8.9 66 139-205 54-119 (178)
91 3iby_A Ferrous iron transport 97.4 0.00098 3.3E-08 51.0 9.0 64 138-204 46-121 (256)
92 2fv8_A H6, RHO-related GTP-bin 97.4 0.0013 4.4E-08 48.3 9.4 65 139-204 72-140 (207)
93 3a4m_A L-seryl-tRNA(SEC) kinas 97.4 0.00026 8.9E-09 54.3 5.6 39 31-71 4-42 (260)
94 2hf9_A Probable hydrogenase ni 97.3 0.00035 1.2E-08 52.0 6.0 39 31-72 38-76 (226)
95 2yvu_A Probable adenylyl-sulfa 97.3 0.00041 1.4E-08 50.1 6.1 40 30-71 12-51 (186)
96 2a9k_A RAS-related protein RAL 97.3 0.0023 7.7E-08 45.6 9.9 66 138-204 64-134 (187)
97 3clv_A RAB5 protein, putative; 97.3 0.0013 4.6E-08 47.5 8.4 65 140-204 93-158 (208)
98 3con_A GTPase NRAS; structural 97.3 0.0027 9.1E-08 45.6 10.0 67 138-205 67-138 (190)
99 3cph_A RAS-related protein SEC 97.3 0.0025 8.5E-08 46.6 9.8 66 139-205 68-137 (213)
100 2ged_A SR-beta, signal recogni 97.3 0.0024 8.3E-08 46.0 9.6 67 138-205 89-168 (193)
101 1z2a_A RAS-related protein RAB 97.3 0.0013 4.5E-08 46.0 7.9 66 138-204 52-120 (168)
102 3pqc_A Probable GTP-binding pr 97.2 0.0016 5.6E-08 46.7 8.5 39 165-204 106-144 (195)
103 3sjy_A Translation initiation 97.2 0.00025 8.6E-09 57.9 4.5 67 139-205 74-141 (403)
104 2dy1_A Elongation factor G; tr 97.2 0.0006 2.1E-08 59.3 7.0 67 138-205 72-138 (665)
105 3p26_A Elongation factor 1 alp 97.2 0.0035 1.2E-07 52.4 11.3 68 138-205 109-183 (483)
106 2bov_A RAla, RAS-related prote 97.2 0.0042 1.4E-07 45.1 10.3 67 138-205 60-131 (206)
107 2j9r_A Thymidine kinase; TK1, 97.2 0.00051 1.7E-08 51.1 5.1 37 31-69 28-64 (214)
108 1np6_A Molybdopterin-guanine d 97.2 0.0009 3.1E-08 48.2 6.4 42 30-73 5-46 (174)
109 4dcu_A GTP-binding protein ENG 97.2 0.0006 2.1E-08 56.6 6.0 67 138-205 69-143 (456)
110 2c5m_A CTP synthase; cytidine 97.2 0.007 2.4E-07 45.8 11.0 42 31-73 23-65 (294)
111 2dyk_A GTP-binding protein; GT 97.1 0.00053 1.8E-08 47.8 4.6 66 139-205 48-120 (161)
112 2ywe_A GTP-binding protein LEP 97.1 0.0016 5.3E-08 55.9 8.2 67 138-205 71-137 (600)
113 3izy_P Translation initiation 97.0 0.0011 3.7E-08 56.2 6.4 66 139-205 51-116 (537)
114 1a7j_A Phosphoribulokinase; tr 97.0 0.00039 1.3E-08 54.3 3.5 42 30-73 4-45 (290)
115 2gf0_A GTP-binding protein DI- 97.0 0.0036 1.2E-07 45.2 8.3 67 138-205 54-126 (199)
116 1nks_A Adenylate kinase; therm 97.0 0.00089 3E-08 48.3 4.8 38 31-70 1-38 (194)
117 3bh0_A DNAB-like replicative h 96.9 0.0013 4.5E-08 51.9 5.7 40 31-72 68-107 (315)
118 1rz3_A Hypothetical protein rb 96.9 0.0018 6.1E-08 47.5 6.0 42 30-73 21-62 (201)
119 2dr3_A UPF0273 protein PH0284; 96.9 0.0013 4.5E-08 49.4 5.4 40 31-72 23-62 (247)
120 2j69_A Bacterial dynamin-like 96.9 0.0022 7.5E-08 56.1 7.4 65 140-205 174-242 (695)
121 1ega_A Protein (GTP-binding pr 96.9 0.0027 9.3E-08 49.7 7.2 21 32-53 9-29 (301)
122 3t5g_A GTP-binding protein RHE 96.9 0.0072 2.5E-07 42.9 8.8 66 138-204 52-122 (181)
123 3avx_A Elongation factor TS, e 96.9 0.0025 8.6E-08 58.4 7.6 68 138-205 357-424 (1289)
124 1zo1_I IF2, translation initia 96.8 0.0027 9.1E-08 53.3 7.2 66 139-205 50-115 (501)
125 1mky_A Probable GTP-binding pr 96.8 0.0058 2E-07 50.4 9.0 65 140-205 49-122 (439)
126 1svi_A GTP-binding protein YSX 96.8 0.0054 1.8E-07 44.1 7.6 22 31-53 23-44 (195)
127 4a1f_A DNAB helicase, replicat 96.7 0.002 7E-08 51.3 5.5 41 31-73 46-86 (338)
128 2cvh_A DNA repair and recombin 96.7 0.002 6.8E-08 47.5 5.2 36 31-71 20-55 (220)
129 2pez_A Bifunctional 3'-phospho 96.7 0.0029 9.8E-08 45.3 5.8 41 31-73 5-45 (179)
130 1uj2_A Uridine-cytidine kinase 96.7 0.0015 5E-08 49.7 4.4 43 30-73 21-67 (252)
131 2zts_A Putative uncharacterize 96.7 0.0023 7.7E-08 48.1 5.3 42 31-73 30-71 (251)
132 3bgw_A DNAB-like replicative h 96.7 0.0019 6.4E-08 53.5 5.2 42 31-74 197-238 (444)
133 3uie_A Adenylyl-sulfate kinase 96.7 0.003 1E-07 46.2 5.8 43 29-73 23-65 (200)
134 2f1r_A Molybdopterin-guanine d 96.7 0.0018 6.3E-08 46.4 4.4 40 31-72 2-41 (171)
135 2w0m_A SSO2452; RECA, SSPF, un 96.6 0.0031 1E-07 46.8 5.6 40 31-72 23-62 (235)
136 1nrj_B SR-beta, signal recogni 96.6 0.0047 1.6E-07 45.4 6.3 66 139-205 54-132 (218)
137 2xtp_A GTPase IMAP family memb 96.5 0.012 4E-07 44.8 8.3 22 31-53 22-43 (260)
138 3mca_A HBS1, elongation factor 96.5 0.00098 3.3E-08 57.2 2.3 68 138-205 253-327 (592)
139 1kht_A Adenylate kinase; phosp 96.4 0.0033 1.1E-07 45.2 4.5 38 31-70 3-40 (192)
140 3cmw_A Protein RECA, recombina 96.4 0.0088 3E-07 56.9 8.1 41 31-73 732-772 (1706)
141 2q6t_A DNAB replication FORK h 96.3 0.0047 1.6E-07 51.0 5.5 41 31-72 200-240 (444)
142 2qt1_A Nicotinamide riboside k 96.3 0.042 1.4E-06 40.1 10.2 38 29-72 19-56 (207)
143 1m7g_A Adenylylsulfate kinase; 96.3 0.0045 1.5E-07 45.6 4.8 40 30-71 24-64 (211)
144 2r6a_A DNAB helicase, replicat 96.3 0.0057 2E-07 50.7 6.0 42 31-73 203-244 (454)
145 3cmu_A Protein RECA, recombina 96.3 0.01 3.6E-07 57.2 8.3 41 31-73 383-423 (2050)
146 2w58_A DNAI, primosome compone 96.3 0.0052 1.8E-07 44.8 5.0 37 32-70 55-91 (202)
147 3dpu_A RAB family protein; roc 96.3 0.04 1.4E-06 46.5 11.0 65 138-205 96-162 (535)
148 3nva_A CTP synthase; rossman f 96.3 0.054 1.8E-06 45.4 11.3 42 31-73 3-45 (535)
149 3ec2_A DNA replication protein 96.3 0.0045 1.5E-07 44.3 4.4 38 31-69 38-75 (180)
150 3cmw_A Protein RECA, recombina 96.2 0.012 4.2E-07 56.0 7.9 39 31-71 1431-1469(1706)
151 1cr0_A DNA primase/helicase; R 96.2 0.0078 2.7E-07 46.7 5.7 40 31-71 35-74 (296)
152 3t61_A Gluconokinase; PSI-biol 96.2 0.0033 1.1E-07 46.0 3.3 38 27-71 14-51 (202)
153 1q57_A DNA primase/helicase; d 96.1 0.0039 1.3E-07 52.4 3.9 41 31-73 242-283 (503)
154 2orw_A Thymidine kinase; TMTK, 96.1 0.0081 2.8E-07 43.5 5.1 38 31-70 3-40 (184)
155 3bos_A Putative DNA replicatio 96.1 0.0093 3.2E-07 44.3 5.6 39 31-71 52-90 (242)
156 1f60_A Elongation factor EEF1A 96.1 0.014 4.8E-07 48.4 7.0 68 138-205 83-157 (458)
157 2pbr_A DTMP kinase, thymidylat 96.1 0.011 3.8E-07 42.4 5.8 34 33-68 2-35 (195)
158 2gks_A Bifunctional SAT/APS ki 96.1 0.0074 2.5E-07 51.2 5.4 39 31-71 372-410 (546)
159 2vo1_A CTP synthase 1; pyrimid 96.1 0.12 4.2E-06 39.4 11.2 42 31-73 23-65 (295)
160 3c8u_A Fructokinase; YP_612366 96.0 0.015 5.2E-07 42.6 6.2 40 30-71 21-60 (208)
161 1jny_A EF-1-alpha, elongation 96.0 0.013 4.5E-07 48.2 6.3 68 138-205 82-156 (435)
162 3trf_A Shikimate kinase, SK; a 96.0 0.0062 2.1E-07 43.6 3.8 34 31-71 5-38 (185)
163 3j2k_7 ERF3, eukaryotic polype 95.9 0.011 3.7E-07 48.9 5.5 68 138-205 93-167 (439)
164 2z43_A DNA repair and recombin 95.9 0.0064 2.2E-07 48.1 4.0 40 31-72 107-152 (324)
165 1nn5_A Similar to deoxythymidy 95.9 0.014 4.8E-07 42.7 5.5 36 31-68 9-44 (215)
166 1e6c_A Shikimate kinase; phosp 95.9 0.0054 1.8E-07 43.4 3.1 33 31-70 2-34 (173)
167 3cmu_A Protein RECA, recombina 95.9 0.024 8.3E-07 54.8 8.3 41 31-73 732-772 (2050)
168 3e2i_A Thymidine kinase; Zn-bi 95.8 0.0069 2.4E-07 45.0 3.6 37 31-69 28-64 (219)
169 2plr_A DTMP kinase, probable t 95.8 0.013 4.5E-07 42.7 5.2 35 31-68 4-38 (213)
170 1zun_B Sulfate adenylate trans 95.8 0.014 4.8E-07 48.0 5.8 68 138-205 102-169 (434)
171 2qgz_A Helicase loader, putati 95.8 0.013 4.4E-07 46.0 5.3 38 31-70 152-190 (308)
172 2kjq_A DNAA-related protein; s 95.8 0.011 3.9E-07 41.1 4.5 39 31-71 36-74 (149)
173 3a8t_A Adenylate isopentenyltr 95.7 0.025 8.7E-07 44.9 6.7 36 31-73 40-75 (339)
174 3tqc_A Pantothenate kinase; bi 95.7 0.018 6.3E-07 45.4 5.7 44 29-73 90-134 (321)
175 1qhx_A CPT, protein (chloramph 95.7 0.0063 2.2E-07 43.3 2.9 35 31-70 3-37 (178)
176 1odf_A YGR205W, hypothetical 3 95.7 0.01 3.5E-07 46.2 4.2 42 29-72 29-73 (290)
177 3do6_A Formate--tetrahydrofola 95.7 0.0063 2.1E-07 50.1 3.0 52 29-84 41-95 (543)
178 1via_A Shikimate kinase; struc 95.7 0.0067 2.3E-07 43.1 3.0 34 31-71 4-37 (175)
179 1x6v_B Bifunctional 3'-phospho 95.6 0.017 5.7E-07 49.8 5.7 41 30-72 51-91 (630)
180 2ce2_X GTPase HRAS; signaling 95.6 0.038 1.3E-06 38.0 6.8 67 138-205 49-120 (166)
181 2wwf_A Thymidilate kinase, put 95.6 0.018 6.3E-07 42.0 5.3 36 31-68 10-45 (212)
182 1sq5_A Pantothenate kinase; P- 95.6 0.017 5.7E-07 45.3 5.2 43 29-73 78-122 (308)
183 2axn_A 6-phosphofructo-2-kinas 95.6 0.018 6.2E-07 48.5 5.7 40 31-71 34-73 (520)
184 2iyv_A Shikimate kinase, SK; t 95.6 0.0056 1.9E-07 43.9 2.2 34 31-71 2-35 (184)
185 2z0h_A DTMP kinase, thymidylat 95.5 0.025 8.6E-07 40.7 5.7 35 33-69 2-36 (197)
186 4edh_A DTMP kinase, thymidylat 95.5 0.024 8.2E-07 42.0 5.6 36 31-68 6-41 (213)
187 3lxx_A GTPase IMAP family memb 95.5 0.057 2E-06 40.3 7.8 22 31-53 29-50 (239)
188 1m8p_A Sulfate adenylyltransfe 95.5 0.018 6.2E-07 49.1 5.3 40 30-71 395-435 (573)
189 4bas_A ADP-ribosylation factor 95.5 0.034 1.2E-06 39.9 6.2 67 138-205 61-139 (199)
190 3vaa_A Shikimate kinase, SK; s 95.4 0.014 4.6E-07 42.6 4.0 34 31-71 25-58 (199)
191 1kag_A SKI, shikimate kinase I 95.4 0.009 3.1E-07 42.2 2.8 33 31-70 4-36 (173)
192 2hxs_A RAB-26, RAS-related pro 95.4 0.042 1.5E-06 38.5 6.4 67 139-205 55-127 (178)
193 4i1u_A Dephospho-COA kinase; s 95.4 0.072 2.5E-06 39.3 7.7 33 31-71 9-41 (210)
194 1nlf_A Regulatory protein REPA 95.3 0.023 7.9E-07 43.7 5.2 39 31-71 30-78 (279)
195 2qtf_A Protein HFLX, GTP-bindi 95.3 0.04 1.4E-06 44.3 6.7 23 31-54 179-201 (364)
196 1ukz_A Uridylate kinase; trans 95.3 0.012 4.2E-07 42.7 3.4 36 28-70 12-47 (203)
197 1v5w_A DMC1, meiotic recombina 95.3 0.023 7.9E-07 45.2 5.2 41 31-72 122-167 (343)
198 4dhe_A Probable GTP-binding pr 95.3 0.038 1.3E-06 40.5 6.1 66 138-205 77-156 (223)
199 1u8z_A RAS-related protein RAL 95.3 0.044 1.5E-06 37.8 6.1 66 138-204 50-120 (168)
200 3crm_A TRNA delta(2)-isopenten 95.3 0.014 4.8E-07 46.1 3.8 37 29-72 3-39 (323)
201 2ze6_A Isopentenyl transferase 95.2 0.014 4.9E-07 44.3 3.7 34 31-71 1-34 (253)
202 2efe_B Small GTP-binding prote 95.2 0.059 2E-06 37.9 6.8 67 138-205 59-129 (181)
203 1zj6_A ADP-ribosylation factor 95.2 0.074 2.5E-06 37.8 7.3 67 138-205 58-129 (187)
204 3kb2_A SPBC2 prophage-derived 95.2 0.016 5.6E-07 40.7 3.7 33 32-71 2-34 (173)
205 3ihw_A Centg3; RAS, centaurin, 95.2 0.23 7.9E-06 35.2 9.8 62 138-205 65-131 (184)
206 3oes_A GTPase rhebl1; small GT 95.2 0.053 1.8E-06 39.2 6.4 66 138-204 70-140 (201)
207 2p5s_A RAS and EF-hand domain 95.1 0.043 1.5E-06 39.6 5.9 66 138-204 75-144 (199)
208 3def_A T7I23.11 protein; chlor 95.1 0.055 1.9E-06 41.2 6.7 20 33-53 38-57 (262)
209 1zuh_A Shikimate kinase; alpha 95.1 0.014 4.7E-07 41.2 2.9 34 31-71 7-40 (168)
210 4hlc_A DTMP kinase, thymidylat 95.1 0.037 1.3E-06 40.7 5.3 35 30-67 1-35 (205)
211 2h57_A ADP-ribosylation factor 95.0 0.11 3.7E-06 37.0 7.8 67 138-205 65-138 (190)
212 3i8s_A Ferrous iron transport 95.0 0.057 1.9E-06 41.5 6.6 64 138-204 48-123 (274)
213 2gf9_A RAS-related protein RAB 95.0 0.064 2.2E-06 38.2 6.5 67 138-205 69-139 (189)
214 1n0w_A DNA repair protein RAD5 95.0 0.027 9.2E-07 41.9 4.6 40 31-71 24-68 (243)
215 1gtv_A TMK, thymidylate kinase 95.0 0.0072 2.5E-07 44.3 1.3 35 33-69 2-36 (214)
216 1knq_A Gluconate kinase; ALFA/ 95.0 0.037 1.2E-06 39.1 5.0 34 31-71 8-41 (175)
217 3llu_A RAS-related GTP-binding 95.0 0.075 2.6E-06 38.2 6.8 66 138-204 67-140 (196)
218 2h17_A ADP-ribosylation factor 95.0 0.064 2.2E-06 38.0 6.3 67 138-205 63-134 (181)
219 1l8q_A Chromosomal replication 95.0 0.03 1E-06 43.9 4.9 38 31-70 37-74 (324)
220 1g8f_A Sulfate adenylyltransfe 94.9 0.024 8.1E-07 47.7 4.4 41 30-71 394-435 (511)
221 2nzj_A GTP-binding protein REM 94.9 0.075 2.6E-06 37.0 6.5 66 139-205 51-123 (175)
222 2g6b_A RAS-related protein RAB 94.9 0.048 1.6E-06 38.3 5.5 66 139-205 59-128 (180)
223 1r8s_A ADP-ribosylation factor 94.9 0.099 3.4E-06 36.0 7.1 67 138-205 42-113 (164)
224 3izq_1 HBS1P, elongation facto 94.9 0.041 1.4E-06 47.3 5.9 68 138-205 243-317 (611)
225 2fg5_A RAB-22B, RAS-related pr 94.9 0.055 1.9E-06 38.8 5.8 67 138-205 70-140 (192)
226 1qf9_A UMP/CMP kinase, protein 94.9 0.026 8.9E-07 40.4 4.0 34 30-70 5-38 (194)
227 2jeo_A Uridine-cytidine kinase 94.8 0.037 1.3E-06 41.6 5.0 40 31-71 25-68 (245)
228 1jwy_B Dynamin A GTPase domain 94.8 0.033 1.1E-06 43.4 4.9 66 139-205 130-210 (315)
229 2ehv_A Hypothetical protein PH 94.8 0.047 1.6E-06 40.8 5.5 39 31-71 30-69 (251)
230 1gvn_B Zeta; postsegregational 94.8 0.019 6.4E-07 44.6 3.3 35 33-71 34-68 (287)
231 3v9p_A DTMP kinase, thymidylat 94.8 0.032 1.1E-06 41.8 4.4 35 31-67 25-63 (227)
232 1c1y_A RAS-related protein RAP 94.8 0.054 1.9E-06 37.4 5.4 67 138-205 49-120 (167)
233 2v54_A DTMP kinase, thymidylat 94.8 0.028 9.4E-07 40.8 4.0 35 31-69 4-38 (204)
234 1jbk_A CLPB protein; beta barr 94.8 0.048 1.6E-06 38.5 5.2 38 31-69 43-86 (195)
235 1z0f_A RAB14, member RAS oncog 94.7 0.056 1.9E-06 37.8 5.5 67 138-205 62-132 (179)
236 1r2q_A RAS-related protein RAB 94.7 0.064 2.2E-06 37.1 5.8 67 138-204 53-122 (170)
237 1w78_A FOLC bifunctional prote 94.7 0.054 1.9E-06 44.3 6.0 35 29-67 47-81 (422)
238 2i1q_A DNA repair and recombin 94.7 0.02 7E-07 45.0 3.4 41 31-72 98-153 (322)
239 2bwj_A Adenylate kinase 5; pho 94.7 0.017 5.7E-07 41.7 2.7 33 31-70 12-44 (199)
240 3hjn_A DTMP kinase, thymidylat 94.7 0.052 1.8E-06 39.6 5.3 33 34-68 3-35 (197)
241 3foz_A TRNA delta(2)-isopenten 94.7 0.076 2.6E-06 41.7 6.4 35 31-72 10-44 (316)
242 3bc1_A RAS-related protein RAB 94.7 0.059 2E-06 38.2 5.5 66 139-205 69-139 (195)
243 1y63_A LMAJ004144AAA protein; 94.7 0.025 8.7E-07 40.6 3.5 35 31-71 10-44 (184)
244 3lv8_A DTMP kinase, thymidylat 94.7 0.049 1.7E-06 41.0 5.2 39 31-71 27-65 (236)
245 3jvv_A Twitching mobility prot 94.6 0.83 2.8E-05 36.5 12.6 37 31-68 123-159 (356)
246 3ld9_A DTMP kinase, thymidylat 94.6 0.048 1.6E-06 40.7 5.0 45 28-73 18-62 (223)
247 4fcw_A Chaperone protein CLPB; 94.6 0.047 1.6E-06 42.3 5.2 39 33-73 49-87 (311)
248 2atx_A Small GTP binding prote 94.6 0.075 2.6E-06 38.0 6.0 67 138-205 64-134 (194)
249 1r5b_A Eukaryotic peptide chai 94.6 0.033 1.1E-06 46.3 4.4 68 138-205 119-193 (467)
250 2rhm_A Putative kinase; P-loop 94.6 0.031 1.1E-06 40.1 3.8 25 31-56 5-29 (193)
251 4tmk_A Protein (thymidylate ki 94.6 0.056 1.9E-06 40.0 5.2 38 31-71 3-41 (213)
252 2grj_A Dephospho-COA kinase; T 94.5 0.029 1E-06 40.8 3.6 35 31-72 12-46 (192)
253 3aez_A Pantothenate kinase; tr 94.5 0.072 2.5E-06 41.8 6.0 42 29-71 88-130 (312)
254 1n0u_A EF-2, elongation factor 94.5 0.038 1.3E-06 49.4 4.9 67 138-205 96-162 (842)
255 3tkl_A RAS-related protein RAB 94.5 0.055 1.9E-06 38.6 5.0 66 139-205 64-133 (196)
256 1zd9_A ADP-ribosylation factor 94.5 0.073 2.5E-06 37.9 5.6 67 138-205 65-136 (188)
257 3cb4_D GTP-binding protein LEP 94.5 0.031 1E-06 48.0 4.1 67 138-205 69-135 (599)
258 3asz_A Uridine kinase; cytidin 94.5 0.047 1.6E-06 39.8 4.6 39 30-73 5-43 (211)
259 2f6r_A COA synthase, bifunctio 94.4 0.034 1.2E-06 42.9 4.0 36 28-71 72-107 (281)
260 2gco_A H9, RHO-related GTP-bin 94.4 0.067 2.3E-06 38.7 5.3 67 138-205 71-141 (201)
261 2a5j_A RAS-related protein RAB 94.4 0.052 1.8E-06 38.8 4.7 66 139-205 69-138 (191)
262 1zbd_A Rabphilin-3A; G protein 94.4 0.077 2.6E-06 38.2 5.7 67 138-205 55-125 (203)
263 3t34_A Dynamin-related protein 94.4 0.064 2.2E-06 42.8 5.6 66 139-205 135-215 (360)
264 2p5t_B PEZT; postsegregational 94.4 0.022 7.4E-07 43.2 2.7 38 30-72 31-68 (253)
265 1ly1_A Polynucleotide kinase; 94.4 0.036 1.2E-06 39.2 3.8 35 31-71 2-36 (181)
266 1wb1_A Translation elongation 94.4 0.02 7E-07 47.8 2.7 67 138-205 71-137 (482)
267 2if2_A Dephospho-COA kinase; a 94.3 0.024 8.3E-07 41.2 2.8 32 32-71 2-33 (204)
268 1ek0_A Protein (GTP-binding pr 94.3 0.1 3.4E-06 36.1 6.0 66 138-204 50-119 (170)
269 2cdn_A Adenylate kinase; phosp 94.3 0.048 1.6E-06 39.6 4.4 36 28-70 17-52 (201)
270 2c95_A Adenylate kinase 1; tra 94.3 0.036 1.2E-06 39.8 3.7 33 31-70 9-41 (196)
271 3e1s_A Exodeoxyribonuclease V, 94.3 0.061 2.1E-06 45.9 5.6 33 34-67 206-238 (574)
272 3exa_A TRNA delta(2)-isopenten 94.3 0.061 2.1E-06 42.3 5.1 35 31-72 3-37 (322)
273 3bwd_D RAC-like GTP-binding pr 94.3 0.095 3.2E-06 36.8 5.8 66 138-204 54-123 (182)
274 2hup_A RAS-related protein RAB 94.3 0.092 3.1E-06 38.0 5.8 66 139-205 77-146 (201)
275 1vg8_A RAS-related protein RAB 94.3 0.05 1.7E-06 39.3 4.4 67 138-205 55-129 (207)
276 2erx_A GTP-binding protein DI- 94.3 0.087 3E-06 36.5 5.5 66 138-204 49-120 (172)
277 2p65_A Hypothetical protein PF 94.3 0.044 1.5E-06 38.7 4.0 27 31-58 43-69 (187)
278 2qby_B CDC6 homolog 3, cell di 94.2 0.055 1.9E-06 43.2 5.0 39 31-71 45-91 (384)
279 2bcg_Y Protein YP2, GTP-bindin 94.2 0.17 5.8E-06 36.5 7.2 67 138-205 55-125 (206)
280 1z0j_A RAB-22, RAS-related pro 94.2 0.13 4.3E-06 35.6 6.3 68 138-205 53-123 (170)
281 1jbw_A Folylpolyglutamate synt 94.2 0.064 2.2E-06 43.9 5.3 34 30-67 38-71 (428)
282 1upt_A ARL1, ADP-ribosylation 94.2 0.13 4.3E-06 35.7 6.2 66 139-205 50-120 (171)
283 2yc2_C IFT27, small RAB-relate 94.2 0.053 1.8E-06 39.1 4.3 66 139-205 72-144 (208)
284 1aky_A Adenylate kinase; ATP:A 94.1 0.046 1.6E-06 40.3 4.0 33 31-70 4-36 (220)
285 3n70_A Transport activator; si 94.1 0.025 8.7E-07 38.9 2.4 36 34-72 27-62 (145)
286 1tev_A UMP-CMP kinase; ploop, 94.1 0.048 1.7E-06 39.0 4.0 33 31-70 3-35 (196)
287 3dz8_A RAS-related protein RAB 94.1 0.024 8.3E-07 40.6 2.4 67 138-205 70-140 (191)
288 1uf9_A TT1252 protein; P-loop, 94.1 0.04 1.4E-06 39.8 3.6 36 28-71 5-40 (203)
289 2r2a_A Uncharacterized protein 94.1 0.036 1.2E-06 40.6 3.2 36 34-70 7-48 (199)
290 1kk1_A EIF2gamma; initiation o 94.1 0.036 1.2E-06 45.2 3.5 66 140-205 83-149 (410)
291 3qq5_A Small GTP-binding prote 94.1 0.11 3.8E-06 42.6 6.4 62 141-205 84-152 (423)
292 3lw7_A Adenylate kinase relate 94.0 0.039 1.3E-06 38.6 3.3 28 33-66 3-30 (179)
293 2vli_A Antibiotic resistance p 94.0 0.023 7.9E-07 40.4 2.0 30 31-65 5-34 (183)
294 4b3f_X DNA-binding protein smu 94.0 0.075 2.6E-06 45.9 5.6 34 34-68 207-240 (646)
295 3cm0_A Adenylate kinase; ATP-b 94.0 0.052 1.8E-06 38.7 3.9 33 31-70 4-36 (186)
296 1g16_A RAS-related protein SEC 94.0 0.061 2.1E-06 37.3 4.2 67 138-205 50-120 (170)
297 2j0v_A RAC-like GTP-binding pr 94.0 0.086 3E-06 38.3 5.2 66 138-204 55-124 (212)
298 2atv_A RERG, RAS-like estrogen 94.0 0.15 5.1E-06 36.5 6.4 66 138-205 74-144 (196)
299 3d3q_A TRNA delta(2)-isopenten 93.9 0.061 2.1E-06 42.7 4.5 34 32-72 8-41 (340)
300 2fn4_A P23, RAS-related protei 93.9 0.17 5.7E-06 35.4 6.5 65 139-204 56-125 (181)
301 1ky3_A GTP-binding protein YPT 93.9 0.11 3.8E-06 36.3 5.6 67 138-205 56-130 (182)
302 3ake_A Cytidylate kinase; CMP 93.9 0.053 1.8E-06 39.3 3.9 33 32-71 3-35 (208)
303 2qpt_A EH domain-containing pr 93.9 0.05 1.7E-06 46.2 4.2 64 141-205 155-230 (550)
304 4dqx_A Probable oxidoreductase 93.9 0.059 2E-06 41.4 4.3 61 1-71 1-61 (277)
305 2b6h_A ADP-ribosylation factor 93.8 0.19 6.6E-06 35.9 6.8 67 138-205 71-142 (192)
306 1mh1_A RAC1; GTP-binding, GTPa 93.8 0.081 2.8E-06 37.3 4.7 66 138-204 51-120 (186)
307 1x3s_A RAS-related protein RAB 93.8 0.12 4.2E-06 36.7 5.7 68 138-205 62-133 (195)
308 1ksh_A ARF-like protein 2; sma 93.8 0.12 4E-06 36.6 5.6 67 138-205 60-131 (186)
309 3cpj_B GTP-binding protein YPT 93.8 0.15 5E-06 37.5 6.2 66 139-205 61-130 (223)
310 3eph_A TRNA isopentenyltransfe 93.8 0.3 1E-05 39.7 8.3 33 32-71 3-35 (409)
311 2y8e_A RAB-protein 6, GH09086P 93.7 0.13 4.4E-06 35.9 5.6 65 139-204 62-130 (179)
312 1moz_A ARL1, ADP-ribosylation 93.7 0.13 4.4E-06 36.2 5.6 67 138-205 60-131 (183)
313 1z08_A RAS-related protein RAB 93.7 0.093 3.2E-06 36.3 4.8 67 138-205 53-123 (170)
314 3umf_A Adenylate kinase; rossm 93.7 0.078 2.7E-06 39.4 4.5 26 30-56 28-53 (217)
315 1jjv_A Dephospho-COA kinase; P 93.7 0.059 2E-06 39.2 3.8 33 31-71 2-34 (206)
316 2qby_A CDC6 homolog 1, cell di 93.7 0.065 2.2E-06 42.6 4.4 40 31-71 45-86 (386)
317 3tau_A Guanylate kinase, GMP k 93.7 0.063 2.2E-06 39.3 3.9 27 29-56 6-32 (208)
318 1pzn_A RAD51, DNA repair and r 93.6 0.072 2.5E-06 42.5 4.5 40 31-71 131-175 (349)
319 1e8c_A UDP-N-acetylmuramoylala 93.6 0.1 3.5E-06 43.7 5.5 34 30-67 107-140 (498)
320 1o5z_A Folylpolyglutamate synt 93.6 0.082 2.8E-06 43.6 4.9 34 30-67 51-84 (442)
321 2hjg_A GTP-binding protein ENG 93.6 0.079 2.7E-06 43.5 4.7 67 138-205 49-123 (436)
322 1cke_A CK, MSSA, protein (cyti 93.5 0.078 2.7E-06 39.0 4.3 33 31-70 5-37 (227)
323 1s0u_A EIF-2-gamma, translatio 93.5 0.041 1.4E-06 44.8 3.0 66 140-205 81-147 (408)
324 1tf7_A KAIC; homohexamer, hexa 93.5 0.35 1.2E-05 40.6 8.8 38 31-71 39-78 (525)
325 3nrs_A Dihydrofolate:folylpoly 93.5 0.13 4.5E-06 42.3 6.0 35 29-67 50-84 (437)
326 2bbw_A Adenylate kinase 4, AK4 93.5 0.074 2.5E-06 40.0 4.1 26 31-57 27-52 (246)
327 3eag_A UDP-N-acetylmuramate:L- 93.5 0.087 3E-06 41.5 4.7 32 31-66 108-139 (326)
328 1wms_A RAB-9, RAB9, RAS-relate 93.5 0.17 5.9E-06 35.2 5.9 66 139-205 55-128 (177)
329 2vhj_A Ntpase P4, P4; non- hyd 93.4 0.037 1.3E-06 43.7 2.4 35 31-70 123-157 (331)
330 2fu5_C RAS-related protein RAB 93.4 0.12 4.2E-06 36.3 5.0 66 139-205 56-125 (183)
331 2wtz_A UDP-N-acetylmuramoyl-L- 93.4 0.12 4E-06 43.7 5.6 34 30-67 145-178 (535)
332 2q3h_A RAS homolog gene family 93.4 0.2 6.8E-06 35.9 6.2 65 139-204 67-135 (201)
333 3upu_A ATP-dependent DNA helic 93.3 0.12 4.2E-06 42.6 5.6 33 34-67 47-80 (459)
334 3iij_A Coilin-interacting nucl 93.3 0.069 2.4E-06 37.9 3.5 25 31-56 11-35 (180)
335 1kao_A RAP2A; GTP-binding prot 93.3 0.24 8.4E-06 33.9 6.4 66 138-204 49-119 (167)
336 2oil_A CATX-8, RAS-related pro 93.3 0.25 8.4E-06 35.1 6.5 66 138-204 72-141 (193)
337 3t15_A Ribulose bisphosphate c 93.2 0.078 2.7E-06 41.1 4.0 35 31-70 36-70 (293)
338 2vos_A Folylpolyglutamate synt 93.2 0.12 4E-06 43.2 5.3 34 30-67 63-96 (487)
339 3l0i_B RAS-related protein RAB 93.2 0.14 4.9E-06 36.7 5.2 66 139-205 81-150 (199)
340 1ak2_A Adenylate kinase isoenz 93.2 0.09 3.1E-06 39.1 4.2 34 30-70 15-48 (233)
341 1kgd_A CASK, peripheral plasma 93.2 0.069 2.4E-06 38.1 3.4 25 31-56 5-29 (180)
342 2z4s_A Chromosomal replication 93.2 0.091 3.1E-06 43.3 4.5 39 31-71 130-170 (440)
343 1vht_A Dephospho-COA kinase; s 93.1 0.071 2.4E-06 39.1 3.5 33 31-71 4-36 (218)
344 4eun_A Thermoresistant glucoki 93.1 0.093 3.2E-06 38.0 4.0 34 31-71 29-62 (200)
345 4ag6_A VIRB4 ATPase, type IV s 93.1 0.14 4.6E-06 41.4 5.4 33 38-71 41-73 (392)
346 1zd8_A GTP:AMP phosphotransfer 93.1 0.052 1.8E-06 40.2 2.7 33 31-70 7-39 (227)
347 3cr8_A Sulfate adenylyltranfer 93.1 0.072 2.5E-06 45.2 3.8 40 31-71 369-408 (552)
348 1zak_A Adenylate kinase; ATP:A 93.0 0.061 2.1E-06 39.6 3.1 26 31-57 5-30 (222)
349 3syl_A Protein CBBX; photosynt 93.0 0.12 3.9E-06 40.1 4.8 38 31-70 67-108 (309)
350 1f6b_A SAR1; gtpases, N-termin 93.0 0.31 1.1E-05 35.0 6.8 67 138-205 67-138 (198)
351 2chg_A Replication factor C sm 93.0 0.054 1.9E-06 39.3 2.7 35 34-70 41-75 (226)
352 3b1v_A Ferrous iron uptake tra 93.0 0.34 1.2E-05 37.1 7.3 63 139-204 48-118 (272)
353 2x77_A ADP-ribosylation factor 93.0 0.17 5.8E-06 35.9 5.3 67 138-205 64-135 (189)
354 2v1u_A Cell division control p 92.9 0.089 3.1E-06 41.8 4.1 39 31-71 44-88 (387)
355 2bjv_A PSP operon transcriptio 92.9 0.076 2.6E-06 40.3 3.5 38 33-72 31-68 (265)
356 2f7s_A C25KG, RAS-related prot 92.9 0.054 1.8E-06 39.5 2.6 67 138-205 82-153 (217)
357 4gzl_A RAS-related C3 botulinu 92.9 0.099 3.4E-06 37.9 4.0 66 138-204 76-145 (204)
358 2jaq_A Deoxyguanosine kinase; 92.9 0.093 3.2E-06 37.8 3.8 24 33-57 2-25 (205)
359 1m2o_B GTP-binding protein SAR 92.9 0.32 1.1E-05 34.7 6.6 67 138-205 65-136 (190)
360 1zp6_A Hypothetical protein AT 92.9 0.08 2.8E-06 37.8 3.4 35 31-70 9-43 (191)
361 4eaq_A DTMP kinase, thymidylat 92.9 0.15 5.3E-06 37.9 5.1 35 30-67 25-59 (229)
362 3tlx_A Adenylate kinase 2; str 92.9 0.12 3.9E-06 38.9 4.4 25 31-56 29-53 (243)
363 1tf7_A KAIC; homohexamer, hexa 92.8 0.14 4.9E-06 43.0 5.3 39 31-71 281-319 (525)
364 1fnn_A CDC6P, cell division co 92.8 0.17 5.8E-06 40.3 5.6 37 33-71 46-83 (389)
365 2a5y_B CED-4; apoptosis; HET: 92.8 0.088 3E-06 44.6 4.0 24 30-54 151-174 (549)
366 2il1_A RAB12; G-protein, GDP, 92.7 0.18 6.1E-06 36.0 5.1 66 138-204 73-142 (192)
367 3tw8_B RAS-related protein RAB 92.7 0.25 8.5E-06 34.4 5.8 65 139-204 57-124 (181)
368 3nwj_A ATSK2; P loop, shikimat 92.7 0.078 2.7E-06 40.2 3.2 34 31-71 48-81 (250)
369 1bif_A 6-phosphofructo-2-kinas 92.7 0.17 5.9E-06 41.9 5.6 38 32-70 39-76 (469)
370 4a74_A DNA repair and recombin 92.7 0.14 4.7E-06 37.6 4.5 40 31-71 25-69 (231)
371 2qor_A Guanylate kinase; phosp 92.6 0.067 2.3E-06 39.0 2.7 25 31-56 12-36 (204)
372 1w4r_A Thymidine kinase; type 92.6 0.42 1.4E-05 34.8 6.8 41 28-70 17-57 (195)
373 2ew1_A RAS-related protein RAB 92.5 0.19 6.5E-06 36.4 5.1 65 139-204 74-142 (201)
374 2pt5_A Shikimate kinase, SK; a 92.5 0.11 3.9E-06 36.2 3.7 32 33-71 2-33 (168)
375 3lk7_A UDP-N-acetylmuramoylala 92.5 0.19 6.7E-06 41.4 5.7 33 31-67 112-144 (451)
376 3a1s_A Iron(II) transport prot 92.5 0.24 8.2E-06 37.6 5.8 64 138-204 50-121 (258)
377 3ney_A 55 kDa erythrocyte memb 92.4 0.11 3.6E-06 38.0 3.5 26 30-56 18-43 (197)
378 4dcu_A GTP-binding protein ENG 92.3 0.052 1.8E-06 44.9 2.0 66 139-205 242-318 (456)
379 2eyu_A Twitching motility prot 92.3 0.29 1E-05 37.3 6.1 39 31-70 25-63 (261)
380 1w5s_A Origin recognition comp 92.3 0.17 5.8E-06 40.7 5.0 37 34-71 52-96 (412)
381 2orv_A Thymidine kinase; TP4A 92.3 0.26 8.9E-06 36.9 5.5 39 29-69 17-55 (234)
382 3hdt_A Putative kinase; struct 92.3 0.13 4.4E-06 38.3 3.9 34 31-71 14-47 (223)
383 2aka_B Dynamin-1; fusion prote 92.2 0.25 8.6E-06 37.9 5.7 66 139-205 124-204 (299)
384 2bdt_A BH3686; alpha-beta prot 92.2 0.11 3.6E-06 37.2 3.3 23 31-54 2-24 (189)
385 3orf_A Dihydropteridine reduct 92.2 0.14 4.9E-06 38.4 4.2 41 27-73 18-58 (251)
386 3kkq_A RAS-related protein M-R 92.2 0.35 1.2E-05 33.9 6.1 67 138-205 64-135 (183)
387 3be4_A Adenylate kinase; malar 92.1 0.1 3.4E-06 38.4 3.1 25 31-56 5-29 (217)
388 4e22_A Cytidylate kinase; P-lo 92.1 0.13 4.5E-06 38.8 3.8 27 29-56 25-51 (252)
389 2ewv_A Twitching motility prot 92.0 0.26 8.8E-06 39.6 5.7 38 30-69 135-173 (372)
390 1fzq_A ADP-ribosylation factor 92.0 0.46 1.6E-05 33.5 6.5 67 138-205 58-129 (181)
391 2j41_A Guanylate kinase; GMP, 92.0 0.15 5E-06 36.9 3.9 25 31-56 6-30 (207)
392 4dsu_A GTPase KRAS, isoform 2B 91.9 0.49 1.7E-05 33.2 6.6 66 139-205 51-121 (189)
393 1z06_A RAS-related protein RAB 91.9 0.28 9.5E-06 34.8 5.3 66 139-205 68-139 (189)
394 3ged_A Short-chain dehydrogena 91.9 0.14 4.9E-06 38.7 3.8 35 31-71 2-36 (247)
395 3tr0_A Guanylate kinase, GMP k 91.9 0.15 5E-06 36.9 3.8 25 31-56 7-31 (205)
396 1z6t_A APAF-1, apoptotic prote 91.9 0.18 6.2E-06 42.8 4.8 41 30-71 146-189 (591)
397 3ch4_B Pmkase, phosphomevalona 91.8 0.19 6.5E-06 36.8 4.3 27 29-56 9-35 (202)
398 3gj0_A GTP-binding nuclear pro 91.8 0.18 6.3E-06 36.8 4.3 66 138-204 62-130 (221)
399 3r20_A Cytidylate kinase; stru 91.8 0.16 5.4E-06 38.1 3.9 34 31-71 9-42 (233)
400 3hn7_A UDP-N-acetylmuramate-L- 91.8 0.2 6.9E-06 42.2 5.0 32 31-66 122-153 (524)
401 3c5c_A RAS-like protein 12; GD 91.6 0.53 1.8E-05 33.4 6.5 65 138-204 67-138 (187)
402 3q85_A GTP-binding protein REM 91.6 0.32 1.1E-05 33.5 5.2 66 138-204 49-120 (169)
403 3lda_A DNA repair protein RAD5 91.6 0.16 5.3E-06 41.4 3.9 40 31-71 178-222 (400)
404 2j1l_A RHO-related GTP-binding 91.5 0.21 7.3E-06 36.4 4.4 66 138-204 80-149 (214)
405 3q72_A GTP-binding protein RAD 91.5 0.51 1.8E-05 32.3 6.2 66 138-204 47-117 (166)
406 2x5o_A UDP-N-acetylmuramoylala 91.4 0.27 9.2E-06 40.4 5.3 33 31-67 104-136 (439)
407 3o47_A ADP-ribosylation factor 91.4 0.33 1.1E-05 38.2 5.6 67 138-205 207-278 (329)
408 1w36_D RECD, exodeoxyribonucle 91.4 0.25 8.4E-06 42.5 5.2 34 34-67 166-202 (608)
409 3reg_A RHO-like small GTPase; 91.3 0.24 8.3E-06 35.2 4.4 66 138-204 69-138 (194)
410 1gwn_A RHO-related GTP-binding 91.2 0.3 1E-05 35.4 4.9 67 138-205 74-144 (205)
411 1j6u_A UDP-N-acetylmuramate-al 91.2 0.24 8.3E-06 41.1 4.8 32 31-66 114-145 (469)
412 2bme_A RAB4A, RAS-related prot 91.2 0.39 1.3E-05 33.7 5.3 66 139-205 58-127 (186)
413 2ocp_A DGK, deoxyguanosine kin 91.1 0.14 4.7E-06 38.3 3.0 26 31-57 2-27 (241)
414 3vtz_A Glucose 1-dehydrogenase 91.1 0.2 6.8E-06 38.2 3.9 41 27-73 10-50 (269)
415 3sr0_A Adenylate kinase; phosp 91.1 0.22 7.5E-06 36.5 4.0 23 34-57 3-25 (206)
416 3k53_A Ferrous iron transport 91.0 0.58 2E-05 35.5 6.5 64 138-204 48-120 (271)
417 4djt_A GTP-binding nuclear pro 90.9 0.3 1E-05 35.5 4.7 65 140-205 61-129 (218)
418 2o52_A RAS-related protein RAB 90.9 0.23 7.7E-06 35.8 3.9 66 139-205 73-142 (200)
419 2wji_A Ferrous iron transport 90.9 0.75 2.6E-05 31.8 6.6 63 139-204 49-119 (165)
420 3fb4_A Adenylate kinase; psych 90.7 0.22 7.6E-06 36.3 3.8 22 34-56 3-24 (216)
421 1ofh_A ATP-dependent HSL prote 90.7 0.36 1.2E-05 37.0 5.2 36 31-71 50-85 (310)
422 1r6b_X CLPA protein; AAA+, N-t 90.7 1 3.5E-05 39.5 8.5 46 33-83 490-537 (758)
423 2gk6_A Regulator of nonsense t 90.6 0.31 1.1E-05 41.9 5.1 34 34-67 197-230 (624)
424 1p3d_A UDP-N-acetylmuramate--a 90.6 0.4 1.4E-05 39.8 5.6 36 31-70 118-154 (475)
425 2fh5_B SR-beta, signal recogni 90.6 0.46 1.6E-05 34.3 5.4 66 139-205 53-127 (214)
426 3te6_A Regulatory protein SIR3 90.6 0.38 1.3E-05 37.8 5.1 40 31-71 45-90 (318)
427 3cbq_A GTP-binding protein REM 90.5 0.8 2.7E-05 32.7 6.6 67 138-205 70-142 (195)
428 2qu8_A Putative nucleolar GTP- 90.4 0.55 1.9E-05 34.5 5.8 67 138-205 74-154 (228)
429 3lvq_E ARF-GAP with SH3 domain 90.4 0.9 3.1E-05 37.7 7.6 67 138-205 364-435 (497)
430 3uf0_A Short-chain dehydrogena 90.4 0.27 9.4E-06 37.5 4.1 33 30-68 30-62 (273)
431 1ltq_A Polynucleotide kinase; 90.4 0.23 8E-06 38.2 3.8 34 31-70 2-35 (301)
432 2i3b_A HCR-ntpase, human cance 90.3 0.28 9.6E-06 35.4 4.0 28 32-61 2-29 (189)
433 4hv4_A UDP-N-acetylmuramate--L 90.3 0.38 1.3E-05 40.2 5.2 29 31-63 122-150 (494)
434 3q3j_B RHO-related GTP-binding 90.2 0.34 1.2E-05 35.3 4.4 67 138-205 73-143 (214)
435 3dii_A Short-chain dehydrogena 90.2 0.26 9E-06 36.9 3.8 36 30-71 1-36 (247)
436 1q3t_A Cytidylate kinase; nucl 90.1 0.31 1.1E-05 36.2 4.1 35 30-71 15-49 (236)
437 2wjg_A FEOB, ferrous iron tran 90.1 0.83 2.9E-05 32.0 6.3 64 138-204 52-123 (188)
438 3a00_A Guanylate kinase, GMP k 90.1 0.16 5.4E-06 36.4 2.4 33 32-65 2-34 (186)
439 1e9r_A Conjugal transfer prote 90.0 0.41 1.4E-05 39.1 5.1 31 39-70 60-90 (437)
440 2f00_A UDP-N-acetylmuramate--L 89.9 0.48 1.7E-05 39.5 5.6 35 31-69 119-154 (491)
441 4imr_A 3-oxoacyl-(acyl-carrier 89.8 0.28 9.4E-06 37.5 3.7 37 30-72 32-68 (275)
442 3r7w_A Gtpase1, GTP-binding pr 89.8 0.35 1.2E-05 37.6 4.4 66 138-204 50-126 (307)
443 1o5i_A 3-oxoacyl-(acyl carrier 89.8 0.34 1.2E-05 36.3 4.2 38 28-71 16-53 (249)
444 2qmh_A HPR kinase/phosphorylas 89.8 0.29 9.8E-06 35.9 3.6 33 30-70 33-65 (205)
445 2ehd_A Oxidoreductase, oxidore 89.8 0.26 8.8E-06 36.4 3.5 36 30-71 4-39 (234)
446 1jal_A YCHF protein; nucleotid 89.7 0.81 2.8E-05 36.7 6.5 37 139-175 65-108 (363)
447 4b79_A PA4098, probable short- 89.7 0.36 1.2E-05 36.4 4.2 36 31-72 11-46 (242)
448 1m7b_A RND3/RHOE small GTP-bin 89.7 0.55 1.9E-05 33.0 5.1 67 138-205 53-123 (184)
449 2xb4_A Adenylate kinase; ATP-b 89.7 0.31 1.1E-05 35.9 3.8 22 34-56 3-24 (223)
450 1e4v_A Adenylate kinase; trans 89.7 0.25 8.6E-06 36.1 3.3 22 34-56 3-24 (214)
451 2wjy_A Regulator of nonsense t 89.6 0.43 1.5E-05 42.4 5.2 34 34-67 373-406 (800)
452 3bs4_A Uncharacterized protein 89.6 0.58 2E-05 35.7 5.3 41 31-73 21-61 (260)
453 3l6e_A Oxidoreductase, short-c 89.6 0.32 1.1E-05 36.2 3.8 35 31-71 3-37 (235)
454 2qz4_A Paraplegin; AAA+, SPG7, 89.5 0.36 1.2E-05 36.2 4.2 36 31-71 39-74 (262)
455 3p19_A BFPVVD8, putative blue 89.5 0.32 1.1E-05 37.0 3.8 36 30-71 15-50 (266)
456 1xzp_A Probable tRNA modificat 89.5 0.58 2E-05 39.0 5.7 64 138-205 289-362 (482)
457 4fgs_A Probable dehydrogenase 89.4 0.36 1.2E-05 37.1 4.1 35 31-71 29-63 (273)
458 1nij_A Hypothetical protein YJ 89.4 0.26 8.9E-06 38.6 3.4 39 31-73 4-42 (318)
459 1lvg_A Guanylate kinase, GMP k 89.3 0.27 9.2E-06 35.6 3.2 26 31-57 4-29 (198)
460 1njg_A DNA polymerase III subu 89.3 0.36 1.2E-05 35.2 4.0 26 32-58 46-71 (250)
461 3dl0_A Adenylate kinase; phosp 89.3 0.25 8.6E-06 36.0 3.1 21 34-55 3-23 (216)
462 3gee_A MNME, tRNA modification 89.2 0.22 7.4E-06 41.5 2.9 65 138-205 279-355 (476)
463 2dby_A GTP-binding protein; GD 89.2 5.7 0.00019 31.8 11.1 37 139-175 68-111 (368)
464 1ojl_A Transcriptional regulat 89.2 0.18 6.3E-06 39.2 2.3 38 33-72 27-64 (304)
465 2ekp_A 2-deoxy-D-gluconate 3-d 89.1 0.37 1.3E-05 35.8 3.9 35 31-71 2-36 (239)
466 3zvr_A Dynamin-1; hydrolase, D 89.1 0.51 1.7E-05 41.6 5.3 66 139-205 149-229 (772)
467 3pxi_A Negative regulator of g 89.1 0.63 2.2E-05 40.9 5.9 39 33-73 523-561 (758)
468 3gem_A Short chain dehydrogena 89.1 0.25 8.7E-06 37.4 3.0 38 28-71 24-61 (260)
469 4fn4_A Short chain dehydrogena 89.1 0.37 1.3E-05 36.6 3.9 35 31-71 7-41 (254)
470 3guy_A Short-chain dehydrogena 89.0 0.27 9.3E-06 36.3 3.1 35 31-71 1-35 (230)
471 1p5z_B DCK, deoxycytidine kina 89.0 0.099 3.4E-06 39.7 0.6 27 29-56 22-48 (263)
472 3tmk_A Thymidylate kinase; pho 89.0 0.35 1.2E-05 35.8 3.6 27 31-58 5-31 (216)
473 1c9k_A COBU, adenosylcobinamid 88.9 0.26 8.9E-06 35.4 2.8 32 34-71 2-33 (180)
474 2fna_A Conserved hypothetical 88.9 0.35 1.2E-05 37.8 3.8 35 32-71 31-65 (357)
475 2h92_A Cytidylate kinase; ross 88.8 0.19 6.5E-06 36.8 2.1 33 32-71 4-36 (219)
476 2iwr_A Centaurin gamma 1; ANK 88.8 1.4 4.9E-05 30.5 6.7 61 139-205 53-120 (178)
477 3gvc_A Oxidoreductase, probabl 88.7 0.41 1.4E-05 36.6 3.9 36 30-71 28-63 (277)
478 3th5_A RAS-related C3 botulinu 88.3 0.086 2.9E-06 38.1 0.0 66 138-204 76-145 (204)
479 1zmt_A Haloalcohol dehalogenas 88.4 0.38 1.3E-05 36.1 3.6 35 31-71 1-35 (254)
480 1sxj_A Activator 1 95 kDa subu 88.4 0.45 1.5E-05 39.9 4.3 36 31-71 77-112 (516)
481 1znw_A Guanylate kinase, GMP k 88.4 0.39 1.3E-05 34.9 3.5 26 31-57 20-45 (207)
482 3tzq_B Short-chain type dehydr 88.4 0.49 1.7E-05 35.9 4.2 35 31-71 11-45 (271)
483 2wkq_A NPH1-1, RAS-related C3 88.4 0.53 1.8E-05 36.5 4.5 66 138-204 201-270 (332)
484 1um8_A ATP-dependent CLP prote 88.3 0.54 1.9E-05 37.5 4.6 35 32-71 73-107 (376)
485 1ye8_A Protein THEP1, hypothet 88.3 0.48 1.6E-05 33.8 3.9 24 33-57 2-25 (178)
486 1fjh_A 3alpha-hydroxysteroid d 88.3 0.47 1.6E-05 35.4 4.0 35 31-71 1-35 (257)
487 1p9r_A General secretion pathw 88.3 0.7 2.4E-05 37.7 5.3 39 31-71 167-205 (418)
488 3tpc_A Short chain alcohol deh 88.3 0.58 2E-05 35.1 4.5 36 31-72 7-42 (257)
489 3f9i_A 3-oxoacyl-[acyl-carrier 88.2 0.4 1.4E-05 35.7 3.6 39 27-71 10-48 (249)
490 3pxx_A Carveol dehydrogenase; 88.2 0.44 1.5E-05 36.3 3.9 37 30-72 9-45 (287)
491 1dek_A Deoxynucleoside monopho 88.2 0.45 1.5E-05 35.8 3.8 29 31-64 1-29 (241)
492 3h7a_A Short chain dehydrogena 88.2 0.51 1.8E-05 35.4 4.2 35 31-71 7-41 (252)
493 1tue_A Replication protein E1; 88.2 0.3 1E-05 36.0 2.7 23 33-56 60-82 (212)
494 1z6g_A Guanylate kinase; struc 88.1 0.33 1.1E-05 35.7 3.0 25 31-56 23-47 (218)
495 1vt4_I APAF-1 related killer D 88.1 0.7 2.4E-05 42.5 5.5 40 31-71 150-191 (1221)
496 3f1l_A Uncharacterized oxidore 88.1 0.48 1.6E-05 35.5 3.9 35 31-71 12-46 (252)
497 3v8b_A Putative dehydrogenase, 88.1 0.47 1.6E-05 36.3 4.0 36 30-71 27-62 (283)
498 3sx2_A Putative 3-ketoacyl-(ac 88.1 0.47 1.6E-05 36.0 4.0 37 30-72 12-48 (278)
499 3u61_B DNA polymerase accessor 88.0 0.49 1.7E-05 36.8 4.1 33 34-70 50-82 (324)
500 1geg_A Acetoin reductase; SDR 88.0 0.44 1.5E-05 35.7 3.7 35 31-71 2-36 (256)
No 1
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=100.00 E-value=1.5e-34 Score=227.72 Aligned_cols=188 Identities=15% Similarity=0.218 Sum_probs=156.5
Q ss_pred EEEEeecCccccccccccccccCCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccccCC
Q 028600 6 RIFTRLGGVRYYAAFGSKDLKIDGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQK 85 (207)
Q Consensus 6 ~~~~~~~~~r~~~~~~~~~~~~~~~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~~~ 85 (207)
++.|+++.+|+++.+.... ..+|+|+|+|+|||+||||+|+|||.++|+ .|+||++||+|++.++++.+|+.+..
T Consensus 71 ~~~Ea~r~lrt~l~~~~~~----~~~kvI~vts~kgG~GKTtva~nLA~~lA~-~G~rVLLID~D~~~~~l~~~~~~~~~ 145 (286)
T 3la6_A 71 LAIEAIRSLRTSLHFAMMQ----AQNNVLMMTGVSPSIGMTFVCANLAAVISQ-TNKRVLLIDCDMRKGYTHELLGTNNV 145 (286)
T ss_dssp HHHHHHHHHHHHHHHHSTT----TTCCEEEEEESSSSSSHHHHHHHHHHHHHT-TTCCEEEEECCTTTCCHHHHHTCCCT
T ss_pred HHHHHHHHHHHHHhhhccC----CCCeEEEEECCCCCCcHHHHHHHHHHHHHh-CCCCEEEEeccCCCCCHHHHhCCCCC
Confidence 3457899999999997743 348999999999999999999999999999 99999999999999999999998876
Q ss_pred cccccc--------ccceecccccceeecccccCCCCCcccccchhhHHHHHHHHHhcccCCCCEEEEcCCCCCCcchhh
Q 028600 86 PEVTKD--------MKMVPIENYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLT 157 (207)
Q Consensus 86 ~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~D~IiiD~~~~~~~~~~~ 157 (207)
.++.+. ..+.+....++++++.+...+...+. .....+.++++.++ +.||+||||+||.+.....
T Consensus 146 ~gl~~~l~~~~~~~~~i~~~~~~~l~vl~~g~~~~~~~el-----l~~~~l~~ll~~l~-~~yD~VIIDtpp~~~~~da- 218 (286)
T 3la6_A 146 NGLSEILIGQGDITTAAKPTSIAKFDLIPRGQVPPNPSEL-----LMSERFAELVNWAS-KNYDLVLIDTPPILAVTDA- 218 (286)
T ss_dssp TCHHHHHHTSSCTTTTCEECSSTTEEEECCCSCCSCHHHH-----HTSHHHHHHHHHHH-HHCSEEEEECCCTTTCTHH-
T ss_pred CCHHHHccCCCCHHHheeccCCCCEEEEeCCCCCCCHHHH-----hchHHHHHHHHHHH-hCCCEEEEcCCCCcchHHH-
Confidence 655432 33455556789999988755433322 33578999999999 9999999999998764333
Q ss_pred hhhhhcCceEEEeeCCchhhHHHHHHHHHHhhhCCCCeeEEEEccccC
Q 028600 158 TTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 158 ~~~~~~~d~vi~v~~~~~~~~~~~~~~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
......+|.+++|+.++.++...+.+.++.+++.+.+++|+|+|+++.
T Consensus 219 ~~l~~~aD~vllVv~~~~~~~~~~~~~~~~l~~~g~~~~GvVlN~v~~ 266 (286)
T 3la6_A 219 AIVGRHVGTTLMVARYAVNTLKEVETSLSRFEQNGIPVKGVILNSIFR 266 (286)
T ss_dssp HHHTTTCSEEEEEEETTTSBHHHHHHHHHHHHHTTCCCCEEEEEEECC
T ss_pred HHHHHHCCeEEEEEeCCCCcHHHHHHHHHHHHhCCCCEEEEEEcCccc
Confidence 334447999999999999999999999999999999999999999974
No 2
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=100.00 E-value=6.5e-34 Score=222.65 Aligned_cols=189 Identities=19% Similarity=0.278 Sum_probs=152.7
Q ss_pred eEEEEeecCccccccccccccccCCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccccC
Q 028600 5 FRIFTRLGGVRYYAAFGSKDLKIDGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQ 84 (207)
Q Consensus 5 ~~~~~~~~~~r~~~~~~~~~~~~~~~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~~ 84 (207)
.++.|+++.+|+++.+.... +.+|+|+|+|+|||+||||+|+|||.++|+ .|+||++||+|++.++++..|+...
T Consensus 60 ~~~~Ea~r~lrt~l~~~~~~----~~~kvI~vts~kgG~GKTt~a~nLA~~lA~-~G~rVLLID~D~~~~~l~~~~~~~~ 134 (271)
T 3bfv_A 60 SPISEKFRGIRSNIMFANPD----SAVQSIVITSEAPGAGKSTIAANLAVAYAQ-AGYKTLIVDGDMRKPTQHYIFNLPN 134 (271)
T ss_dssp SHHHHHHHHHHHHHHHSSTT----CCCCEEEEECSSTTSSHHHHHHHHHHHHHH-TTCCEEEEECCSSSCCHHHHTTCCC
T ss_pred CHHHHHHHHHHHHHHhhccC----CCCeEEEEECCCCCCcHHHHHHHHHHHHHh-CCCeEEEEeCCCCCccHHHHcCCCC
Confidence 34457889999999988643 348999999999999999999999999999 9999999999999999999998876
Q ss_pred Ccccccc--------ccceecccccceeecccccCCCCCcccccchhhHHHHHHHHHhcccCCCCEEEEcCCCCCCcchh
Q 028600 85 KPEVTKD--------MKMVPIENYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQL 156 (207)
Q Consensus 85 ~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~D~IiiD~~~~~~~~~~ 156 (207)
..++.+. ..+.+....++++++.|...+...+. .....+.++++.++ +.||+||||+||.+.....
T Consensus 135 ~~gl~~~L~~~~~l~~~i~~~~~~~l~vl~~g~~~~~~~el-----l~~~~l~~ll~~l~-~~yD~VIIDtpp~~~~~d~ 208 (271)
T 3bfv_A 135 NEGLSSLLLNWSTYQDSIISTEIEDLDVLTSGPIPPNPSEL-----ITSRAFANLYDTLL-MNYNFVIIDTPPVNTVTDA 208 (271)
T ss_dssp SSSHHHHHTTSSCHHHHEEECSSTTEEEECCCSCCSCHHHH-----HTSHHHHHHHHHHH-HHCSEEEEECCCTTTCSHH
T ss_pred CCCHHHHhCCCCCHHHcEEeCCCCCEEEEECCCCCCCHHHH-----hChHHHHHHHHHHH-hCCCEEEEeCCCCchHHHH
Confidence 6555432 12333344788999888654432221 23467889999998 8999999999997653322
Q ss_pred hhhhhhcCceEEEeeCCchhhHHHHHHHHHHhhhCCCCeeEEEEccccC
Q 028600 157 TTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 157 ~~~~~~~~d~vi~v~~~~~~~~~~~~~~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
......+|.+++|+.++.++...+.+.++.+++.+.+++|+|+|+++.
T Consensus 209 -~~l~~~aD~vilVv~~~~~~~~~~~~~~~~l~~~~~~~~GvVlN~~~~ 256 (271)
T 3bfv_A 209 -QLFSKFTGNVVYVVNSENNNKDEVKKGKELIEATGAKLLGVVLNRMPK 256 (271)
T ss_dssp -HHHHHHHCEEEEEEETTSCCHHHHHHHHHHHHTTTCEEEEEEEEEECC
T ss_pred -HHHHHHCCEEEEEEeCCCCcHHHHHHHHHHHHhCCCCEEEEEEeCCcC
Confidence 223346899999999999999999999999999999999999999874
No 3
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=99.98 E-value=2.4e-31 Score=207.35 Aligned_cols=179 Identities=41% Similarity=0.722 Sum_probs=138.7
Q ss_pred cccCCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccccCCccccccccceec--ccccc
Q 028600 25 LKIDGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPI--ENYGV 102 (207)
Q Consensus 25 ~~~~~~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~ 102 (207)
..+.+++++|+|+|+|||+||||+|+|||.+||+ .|+||++||+|++.+++..+++......+.....+.+. ...++
T Consensus 12 ~~l~~~~~vI~v~s~kGGvGKTT~a~nLA~~la~-~G~~VlliD~D~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l 90 (262)
T 2ph1_A 12 ERLGKIKSRIAVMSGKGGVGKSTVTALLAVHYAR-QGKKVGILDADFLGPSIPILFGLRNARIAVSAEGLEPVLTQKYGI 90 (262)
T ss_dssp HHHTTCSCEEEEECSSSCTTHHHHHHHHHHHHHH-TTCCEEEEECCSSCCHHHHHTTCCSCCCEEETTEEECEECTTTCC
T ss_pred hhhccCCeEEEEEcCCCCCCHHHHHHHHHHHHHH-CCCeEEEEeCCCCCCCHHHHhcCCCccccccccCccccccCCCCe
Confidence 3456679999999999999999999999999999 99999999999999888888887654322111222221 34578
Q ss_pred eeecccccCCCCCc-ccccchhhHHHHHHHHHhcccCCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCchhhHHHH
Q 028600 103 KCMSMGFLVPSSSP-VVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDA 181 (207)
Q Consensus 103 ~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~l~~~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~~~~~~~ 181 (207)
+++|.+........ ..+........++++++.+++..|||||||+||++++.......+..+|.+|+|+.++..++..+
T Consensus 91 ~vlp~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~yD~ViID~pp~~~~~~~~~~~~~~aD~viiv~~~~~~s~~~~ 170 (262)
T 2ph1_A 91 KVMSMQFLLPKENTPVIWRGPLIAGMIREFLGRVAWGELDHLLIDLPPGTGDAPLTVMQDAKPTGVVVVSTPQELTAVIV 170 (262)
T ss_dssp EEECGGGGSTTCSSCCCCCSHHHHHHHHHHHHSBCCCSCSEEEEECCSSSSSHHHHHHHHHCCSEEEEEECSSSCCHHHH
T ss_pred EEEeccccCCCcccchhhcCchHHHHHHHHHHHhhccCCCEEEEECcCCCchHHHHHHhhccCCeEEEEecCccchHHHH
Confidence 88888765443222 12233345677888888874368999999999988764443444447899999999999999999
Q ss_pred HHHHHHhhhCCCCeeEEEEcccc
Q 028600 182 RKGITMFSKVQVPVCSFLAQIIS 204 (207)
Q Consensus 182 ~~~l~~l~~~~~~~~g~v~N~~~ 204 (207)
.+.++.+++.+.+++|+|+|+++
T Consensus 171 ~~~~~~l~~~~~~~~gvV~N~~~ 193 (262)
T 2ph1_A 171 EKAINMAEETNTSVLGLVENMSY 193 (262)
T ss_dssp HHHHHHHHTTTCCEEEEEETTCC
T ss_pred HHHHHHHHhCCCCEEEEEECCCc
Confidence 99999999999999999999985
No 4
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=99.98 E-value=4.6e-33 Score=220.70 Aligned_cols=188 Identities=13% Similarity=0.206 Sum_probs=151.8
Q ss_pred EEEeecCccccccccccccccCCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccccCCc
Q 028600 7 IFTRLGGVRYYAAFGSKDLKIDGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKP 86 (207)
Q Consensus 7 ~~~~~~~~r~~~~~~~~~~~~~~~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~~~~ 86 (207)
+.|+++.+|+++.+... .+.+++|+|+|+|||+||||+|+|||.++|+ .|+||++||+|++.++++.+|+.....
T Consensus 84 ~~Ea~r~lrt~l~~~~~----~~~~kvI~vts~kgG~GKTtva~nLA~~lA~-~G~rVLLID~D~r~~~l~~~~~~~~~~ 158 (299)
T 3cio_A 84 AVEAVRALRTSLHFAMM----ETENNILMITGATPDSGKTFVSSTLAAVIAQ-SDQKVLFIDADLRRGYSHNLFTVSNEH 158 (299)
T ss_dssp HHHHHHHHHHHHHHHTS----SCSCCEEEEEESSSSSCHHHHHHHHHHHHHH-TTCCEEEEECCTTTCCHHHHTTCCCSS
T ss_pred HHHHHHHHHHHHHHhcc----CCCCeEEEEECCCCCCChHHHHHHHHHHHHh-CCCcEEEEECCCCCccHHHHcCCCCCC
Confidence 44788889999988763 2347999999999999999999999999999 999999999999999999999887765
Q ss_pred ccccc--------ccceecccccceeecccccCCCCCcccccchhhHHHHHHHHHhcccCCCCEEEEcCCCCCCcchhhh
Q 028600 87 EVTKD--------MKMVPIENYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTT 158 (207)
Q Consensus 87 ~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~D~IiiD~~~~~~~~~~~~ 158 (207)
++.+. +.+.+....++++++.+...+...+. .....+.++++.++ +.||+||||+||.+..... .
T Consensus 159 gl~~~L~~~~~l~~~i~~~~~~~l~vl~~g~~~~~~~el-----l~~~~l~~ll~~l~-~~yD~VIIDtpp~~~~~d~-~ 231 (299)
T 3cio_A 159 GLSEYLAGKDELNKVIQHFGKGGFDVITRGQVPPNPSEL-----LMRDRMRQLLEWAN-DHYDLVIVDTPPMLAVSDA-A 231 (299)
T ss_dssp SHHHHHTTSSCHHHHCEEETTTTEEEECCCSCCSCHHHH-----HTSHHHHHHHHHHH-HHCSEEEEECCCTTTCTHH-H
T ss_pred CHHHHCcCCCCHHHhhhccCCCCEEEEECCCCCCCHHHH-----hCHHHHHHHHHHHH-hCCCEEEEcCCCCchhHHH-H
Confidence 55432 22334445789999988654433221 23477889999998 9999999999997753332 2
Q ss_pred hhhhcCceEEEeeCCchhhHHHHHHHHHHhhhCCCCeeEEEEccccCC
Q 028600 159 TQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPVCSFLAQIISSM 206 (207)
Q Consensus 159 ~~~~~~d~vi~v~~~~~~~~~~~~~~l~~l~~~~~~~~g~v~N~~~~~ 206 (207)
.....+|.+|+|+.++..+...+.+.++.+++.+.+++|+|+|+++..
T Consensus 232 ~l~~~ad~vilV~~~~~~~~~~~~~~~~~l~~~~~~~~GvVlN~~~~~ 279 (299)
T 3cio_A 232 VVGRSVGTSLLVARFGLNTAKEVSLSMQRLEQAGVNIKGAILNGVIKR 279 (299)
T ss_dssp HHGGGCSEEEEEEETTTSCTTHHHHHHHHHHHTTCCCCCEEEEECCCC
T ss_pred HHHHHCCEEEEEEcCCCChHHHHHHHHHHHHhCCCCeEEEEEeCCccC
Confidence 233479999999999999999999999999999999999999999753
No 5
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=99.97 E-value=3.9e-30 Score=198.17 Aligned_cols=168 Identities=16% Similarity=0.149 Sum_probs=132.5
Q ss_pred CCCeEEEEEeCCCCCcHHHHHHHHHHHHHHhC-CCeEEEEecCCCCCCccccc-cccCCcccccc------------ccc
Q 028600 29 GVKDVIAVASGKGGVGKSTTAVNLAVALASKC-QLKVGLLDADVYGPSVPMMM-KIDQKPEVTKD------------MKM 94 (207)
Q Consensus 29 ~~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~-g~~VlliD~d~~~~~l~~~~-~~~~~~~~~~~------------~~~ 94 (207)
+++|+|+|+|.|||+||||+|+|||.++|+ . |+||++||+|++.++++.++ +.....++.+. ..+
T Consensus 2 ~~~~vI~v~s~kGGvGKTt~a~~LA~~la~-~~g~~VlliD~D~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~ 80 (245)
T 3ea0_A 2 NAKRVFGFVSAKGGDGGSCIAANFAFALSQ-EPDIHVLAVDISLPFGDLDMYLSGNTHSQDLADISNASDRLDKSLLDTM 80 (245)
T ss_dssp -CCEEEEEEESSTTSSHHHHHHHHHHHHTT-STTCCEEEEECCTTTCCGGGGTCSSCCSCCHHHHHHTGGGCCHHHHHHH
T ss_pred CCCeEEEEECCCCCcchHHHHHHHHHHHHh-CcCCCEEEEECCCCCCCHHHHhCCCCCCCCHHHHHhhHhhhhHHHHHHH
Confidence 358999999999999999999999999999 8 99999999999988999888 44444333321 112
Q ss_pred eecccccceeecccccCCCCCcccccchhhHHHHHHHHHhcccCCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCc
Q 028600 95 VPIENYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQ 174 (207)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~ 174 (207)
......+++++|.+...... .......+.++++.++ ..||+||||+||+++. .....+..+|.+++|+.++
T Consensus 81 ~~~~~~~l~~l~~~~~~~~~------~~~~~~~l~~~l~~l~-~~yD~viiD~p~~~~~--~~~~~l~~ad~viiv~~~~ 151 (245)
T 3ea0_A 81 VQHISPSLDLIPSPATFEKI------VNIEPERVSDLIHIAA-SFYDYIIVDFGASIDH--VGVWVLEHLDELCIVTTPS 151 (245)
T ss_dssp SEEEETTEEEECCCSSHHHH------HHCCHHHHHHHHHHHH-HHCSEEEEEEESSCCT--THHHHGGGCSEEEEEECSS
T ss_pred hEecCCCeEEEcCCCChHhh------hcCCHHHHHHHHHHHH-hhCCEEEEeCCCCCch--HHHHHHHHCCEEEEEecCc
Confidence 23345678888765322111 1123567889999998 8999999999998874 4456677899999999999
Q ss_pred hhhHHHHHHHHHHhhhCC--CCeeEEEEccccCC
Q 028600 175 DVALIDARKGITMFSKVQ--VPVCSFLAQIISSM 206 (207)
Q Consensus 175 ~~~~~~~~~~l~~l~~~~--~~~~g~v~N~~~~~ 206 (207)
..++..+.++++.+++.+ ...+++|+|+++..
T Consensus 152 ~~~~~~~~~~~~~l~~~~~~~~~~~~v~N~~~~~ 185 (245)
T 3ea0_A 152 LQSLRRAGQLLKLCKEFEKPISRIEIILNRADTN 185 (245)
T ss_dssp HHHHHHHHHHHHHHHTCSSCCSCEEEEEESTTSC
T ss_pred HHHHHHHHHHHHHHHHhCCCccceEEEEecCCCC
Confidence 999999999999999877 56789999999753
No 6
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=99.96 E-value=8.1e-29 Score=192.37 Aligned_cols=165 Identities=16% Similarity=0.252 Sum_probs=131.3
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccccCCc--ccccc--------cccee-cc
Q 028600 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKP--EVTKD--------MKMVP-IE 98 (207)
Q Consensus 30 ~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~~~~--~~~~~--------~~~~~-~~ 98 (207)
|+|+|+|+|.|||+||||+|+|||.+||+ .|+||++||+|++.++++.+++..... ++.+. ..+.. ..
T Consensus 1 M~~vi~v~s~kgGvGKTt~a~~LA~~la~-~g~~VlliD~D~~~~~~~~~lg~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 79 (260)
T 3q9l_A 1 MARIIVVTSGKGGVGKTTSSAAIATGLAQ-KGKKTVVIDFAIGLRNLDLIMGCERRVVYDFVNVIQGDATLNQALIKDKR 79 (260)
T ss_dssp -CEEEEEECSSTTSSHHHHHHHHHHHHHH-TTCCEEEEECCCSSCCHHHHTTCGGGCCSCHHHHHTTSSCHHHHCEECSS
T ss_pred CCeEEEEECCCCCCcHHHHHHHHHHHHHh-CCCcEEEEECCCCCCChhHHhCCCCcccCCHHHHhcCCCChHHheeccCC
Confidence 47999999999999999999999999999 999999999999888999999876542 11110 11111 23
Q ss_pred cccceeecccccCCCCCcccccchhhHHHHHHHHHhcccC-CCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCchhh
Q 028600 99 NYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWG-NLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVA 177 (207)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~-~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~~~ 177 (207)
..+++++|.+..... .......+.++++.++ . .||+||||+||+++. .....+..+|.+|+|+.++..+
T Consensus 80 ~~~l~~lp~~~~~~~-------~~~~~~~~~~~l~~l~-~~~yD~viiD~p~~~~~--~~~~~l~~ad~vi~v~~~~~~s 149 (260)
T 3q9l_A 80 TENLYILPASQTRDK-------DALTREGVAKVLDDLK-AMDFEFIVCDSPAGIET--GALMALYFADEAIITTNPEVSS 149 (260)
T ss_dssp STTEEEECCCSCCCT-------TSSCHHHHHHHHHHHH-HTTCSEEEEECCSSSSH--HHHHHHHTCSEEEEEECSSHHH
T ss_pred CCCEEEecCCCccch-------hhCCHHHHHHHHHHHh-ccCCCEEEEcCCCCCCH--HHHHHHHhCCEEEEEecCChhH
Confidence 467888887754321 1234677899999998 7 999999999998874 4466677899999999999999
Q ss_pred HHHHHHHHHHhhhCCC--------CeeEEEEccccC
Q 028600 178 LIDARKGITMFSKVQV--------PVCSFLAQIISS 205 (207)
Q Consensus 178 ~~~~~~~l~~l~~~~~--------~~~g~v~N~~~~ 205 (207)
+..+.++++.+++.+. ..+++|+|+++.
T Consensus 150 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~N~~~~ 185 (260)
T 3q9l_A 150 VRDSDRILGILASKSRRAENGEEPIKEHLLLTRYNP 185 (260)
T ss_dssp HHHHHHHHHHHTTSSHHHHTTCSCCEEEEEEEEECH
T ss_pred HHHHHHHHHHHHHhccccccccCCcceEEEEecCCc
Confidence 9999999999987652 467999999863
No 7
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=99.96 E-value=8.6e-29 Score=189.80 Aligned_cols=165 Identities=22% Similarity=0.278 Sum_probs=129.7
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccccCC-cccccc--------ccceecccc
Q 028600 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQK-PEVTKD--------MKMVPIENY 100 (207)
Q Consensus 30 ~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~~~-~~~~~~--------~~~~~~~~~ 100 (207)
|+|+|+|+|.|||+||||++++||.++|+ .|+||++||+|++.++++.+++.... .++.+. ..+.+....
T Consensus 1 M~~~i~v~s~kgGvGKTt~a~~LA~~la~-~g~~VlliD~D~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~~i~~~~~~ 79 (237)
T 1g3q_A 1 MGRIISIVSGKGGTGKTTVTANLSVALGD-RGRKVLAVDGDLTMANLSLVLGVDDPDVTLHDVLAGEANVEDAIYMTQFD 79 (237)
T ss_dssp CCEEEEEECSSTTSSHHHHHHHHHHHHHH-TTCCEEEEECCTTSCCHHHHTTCCCCSSCHHHHHTTSSCGGGGCEECSST
T ss_pred CceEEEEecCCCCCCHHHHHHHHHHHHHh-cCCeEEEEeCCCCCCChhHhcCCCCCCCCHHHHhcCCCCHHHHhhcCCCC
Confidence 47899999999999999999999999999 99999999999998899988887654 333221 111122235
Q ss_pred cceeecccccCCCCCcccccchhh-HHHHHHHHHhcccCCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCchhhHH
Q 028600 101 GVKCMSMGFLVPSSSPVVWRGPMV-MSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALI 179 (207)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~l~~~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~~~~~ 179 (207)
+++++|.... ... .... ...+.++++.++ ..||+||||+||+++ ......+..+|.+|+|+.++..++.
T Consensus 80 ~l~~lp~~~~------~~~-~~~~~~~~l~~~l~~l~-~~yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~~~~~~ 149 (237)
T 1g3q_A 80 NVYVLPGAVD------WEH-VLKADPRKLPEVIKSLK-DKFDFILIDCPAGLQ--LDAMSAMLSGEEALLVTNPEISCLT 149 (237)
T ss_dssp TEEEECCCCS------HHH-HHHCCGGGHHHHHHTTG-GGCSEEEEECCSSSS--HHHHHHHTTCSEEEEEECSCHHHHH
T ss_pred CEEEEeCCCc------cch-hhhcCHHHHHHHHHHHH-hcCCEEEEECCCCcC--HHHHHHHHHCCeEEEEecCCcccHH
Confidence 6666662210 000 0111 456788899998 999999999999887 3445667789999999999999999
Q ss_pred HHHHHHHHhhhCCCCeeEEEEccccC
Q 028600 180 DARKGITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 180 ~~~~~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
.+.+.++.+++.+.+.+|+|+|+++.
T Consensus 150 ~~~~~~~~l~~~~~~~~~vv~N~~~~ 175 (237)
T 1g3q_A 150 DTMKVGIVLKKAGLAILGFVLNRYGR 175 (237)
T ss_dssp HHHHHHHHHHHTTCEEEEEEEEEETS
T ss_pred HHHHHHHHHHhCCCceEEEEEecCCc
Confidence 99999999999888999999999975
No 8
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=99.96 E-value=9.2e-29 Score=200.87 Aligned_cols=171 Identities=16% Similarity=0.166 Sum_probs=123.5
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccccCC-------------------cccccc
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQK-------------------PEVTKD 91 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~~~-------------------~~~~~~ 91 (207)
||+|+|+|.|||+||||+|+|||.+||+ .|+||++||+|++.+....+++.... .++.+.
T Consensus 1 MkvIav~s~KGGvGKTT~a~nLA~~LA~-~G~rVLlID~D~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~d~ 79 (361)
T 3pg5_A 1 MRTISFFNNKGGVGKTTLSTNVAHYFAL-QGKRVLYVDCDPQCNATQLMLTEEQTESIYLDGLNDEVAERNSLAKTVYAI 79 (361)
T ss_dssp CEEEEBCCSSCCHHHHHHHHHHHHHHHH-TTCCEEEEECCTTCTTHHHHSCHHHHHHHCCC----CGGGGGHHHHSGGGG
T ss_pred CeEEEEEcCCCCCcHHHHHHHHHHHHHh-CCCcEEEEEcCCCCChhhhhcCchhhhhhhcccccccccccccccCCHHHH
Confidence 6899999999999999999999999999 99999999999998776666543210 111111
Q ss_pred -----------c---cceecccccceeecccccCCCCCccccc-----------chhhHHHHHHHHHhcccC--CCCEEE
Q 028600 92 -----------M---KMVPIENYGVKCMSMGFLVPSSSPVVWR-----------GPMVMSALRKMSREVDWG--NLDILV 144 (207)
Q Consensus 92 -----------~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~l~~~--~~D~Ii 144 (207)
. .+......+++++|.+............ .......+.++++.++ . .|||||
T Consensus 80 l~~~~~~~~~~~~~~~~~~~~~~~L~llp~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~ll~~l~-~~~~yD~VI 158 (361)
T 3pg5_A 80 FVPLREGESQIAAEITPMRSERFGVDVLPGHPALSQIEDLMSDSWQSALGRQTGPFRRIHWAGQLAHAME-RDDRYDVIF 158 (361)
T ss_dssp GHHHHTTCSSCCCCCCCBCCTTTTSEEECCCGGGGTHHHHHHHHHHHHHTTCHHHHTTTTHHHHHHHHHH-HTTCCSEEE
T ss_pred HHHHhcCCCChhhcceeeccCCCCEEEEeCCchHHHHHHHHHHHhhhhhccccchhhHHHHHHHHHHHHh-hccCCCEEE
Confidence 1 1233334578888877544332221100 0001134788888887 6 999999
Q ss_pred EcCCCCCCcchhhhhhhhcCceEEEeeCCchhhHHHHHHHHHHhhhC--------------------C------------
Q 028600 145 IDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKV--------------------Q------------ 192 (207)
Q Consensus 145 iD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~~~~~~~~~~l~~l~~~--------------------~------------ 192 (207)
|||||+++ .....++..+|.+|+|+.++..++..+.++++.+++. .
T Consensus 159 ID~pP~l~--~~~~~aL~~aD~viip~~~~~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 236 (361)
T 3pg5_A 159 FDVGPSLG--PFNRTVLLGCDAFVTPTATDLFSFHAFGNLARWFDAWVTQYAEIHEGNMAEWKKYSADVEAKTRPLRLGG 236 (361)
T ss_dssp EECCSCCS--HHHHHHHTTCSEEEEEECCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSTHHHHTSSSCTTS
T ss_pred EECCCCcC--HHHHHHHHHCCEEEEEecCChHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCcccccccccccccc
Confidence 99999987 5556677789999999999999999998888777654 1
Q ss_pred -----CCeeEEEEccccC
Q 028600 193 -----VPVCSFLAQIISS 205 (207)
Q Consensus 193 -----~~~~g~v~N~~~~ 205 (207)
.+++|+|+|+++.
T Consensus 237 ~~~~~l~~lG~v~n~~~~ 254 (361)
T 3pg5_A 237 FDGEGLRYLGYTTLEYVK 254 (361)
T ss_dssp SSSSCCEEEEEEECC---
T ss_pred ccccccceeeEEEEcchh
Confidence 6789999999984
No 9
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=99.96 E-value=1.9e-28 Score=190.83 Aligned_cols=165 Identities=24% Similarity=0.319 Sum_probs=129.8
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccccCC-cccccc-------ccceeccccc
Q 028600 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQK-PEVTKD-------MKMVPIENYG 101 (207)
Q Consensus 30 ~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~~~-~~~~~~-------~~~~~~~~~~ 101 (207)
|+++|+|+|+|||+||||++++||.++|+ .|+||++||+|++.++++.+++.... .++.+. .........+
T Consensus 1 M~~~I~v~s~kgGvGKTt~a~~LA~~la~-~g~~VlliD~D~~~~~l~~~l~~~~~~~~l~~~l~~~~~~~~~i~~~~~~ 79 (263)
T 1hyq_A 1 MVRTITVASGKGGTGKTTITANLGVALAQ-LGHDVTIVDADITMANLELILGMEGLPVTLQNVLAGEARIDEAIYVGPGG 79 (263)
T ss_dssp -CEEEEEEESSSCSCHHHHHHHHHHHHHH-TTCCEEEEECCCSSSSHHHHTTCCCCCCCHHHHHTTSSCGGGGCEECGGG
T ss_pred CCeEEEEECCCCCCCHHHHHHHHHHHHHh-CCCcEEEEECCCCCCCcchhcCCCCCCCCHHHHHcCCCcHHHhheeCCCC
Confidence 47899999999999999999999999999 99999999999998899988887654 333221 1111112356
Q ss_pred ceeecccccCCCCCcccccchhh-HHHHHHHHHhcccCCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCchhhHHH
Q 028600 102 VKCMSMGFLVPSSSPVVWRGPMV-MSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALID 180 (207)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~l~~~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~~~~~~ 180 (207)
++++|.... ... .... ...+.++++.++ ..|||||||+||+++ ......+..+|.+|+|+.++..++..
T Consensus 80 l~~lp~~~~------~~~-~~~~~~~~l~~~l~~l~-~~yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~~~~~~~ 149 (263)
T 1hyq_A 80 VKVVPAGVS------LEG-LRKANPEKLEDVLTQIM-ESTDILLLDAPAGLE--RSAVIAIAAAQELLLVVNPEISSITD 149 (263)
T ss_dssp CEEEECCSC------HHH-HHHHCHHHHHHHHHHHH-HTCSEEEEECCSSSS--HHHHHHHHHSSEEEEEECSSHHHHHH
T ss_pred eEEEcCCCC------cCh-hhccChHHHHHHHHHHH-hhCCEEEEeCCCCCC--hHHHHHHHHCCEEEEEeCCChhHHHH
Confidence 777762211 000 1122 567888889888 899999999999887 44456667899999999999999999
Q ss_pred HHHHHHHhhhCCCCeeEEEEccccC
Q 028600 181 ARKGITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 181 ~~~~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
+.++++.+++.+.+.+|+|+|+++.
T Consensus 150 ~~~~~~~l~~~~~~~~~vv~N~~~~ 174 (263)
T 1hyq_A 150 GLKTKIVAERLGTKVLGVVVNRITT 174 (263)
T ss_dssp HHHHHHHHHHHTCEEEEEEEEEECT
T ss_pred HHHHHHHHHhcCCCeeEEEEccCCc
Confidence 9999999998888899999999875
No 10
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=99.96 E-value=3.9e-28 Score=187.44 Aligned_cols=164 Identities=18% Similarity=0.171 Sum_probs=121.7
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccccCCcc--c---cccccce------------
Q 028600 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPE--V---TKDMKMV------------ 95 (207)
Q Consensus 33 ~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~~~~~--~---~~~~~~~------------ 95 (207)
.|+| |+|||+||||+|+|||.++|+ .|+||++||+|++ ++++.+|+...... + .......
T Consensus 2 kI~v-s~kGGvGKTt~a~~LA~~la~-~g~~VlliD~D~~-~~l~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (254)
T 3kjh_A 2 KLAV-AGKGGVGKTTVAAGLIKIMAS-DYDKIYAVDGDPD-SCLGQTLGLSIEEAYAITPLIEMKDEIREKTGDGGLLIL 78 (254)
T ss_dssp EEEE-ECSSSHHHHHHHHHHHHHHTT-TCSCEEEEEECTT-SCHHHHTTCCHHHHHTSCCGGGCHHHHHHHHCSSSCCCS
T ss_pred EEEE-ecCCCCCHHHHHHHHHHHHHH-CCCeEEEEeCCCC-cChHHHhCCCcccccccccchhHHHHHHhhccCCccccc
Confidence 3888 789999999999999999999 9999999999997 89999888764321 0 0000000
Q ss_pred -----------eccccccee-ecccccCCCCCcccccchhhHHHHHHHHHhc-ccCCCCEEEEcCCCCCCcchhhhhhhh
Q 028600 96 -----------PIENYGVKC-MSMGFLVPSSSPVVWRGPMVMSALRKMSREV-DWGNLDILVIDMPPGTGDAQLTTTQTL 162 (207)
Q Consensus 96 -----------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l-~~~~~D~IiiD~~~~~~~~~~~~~~~~ 162 (207)
.....++++ ++.+...+...... ......+.++++.+ + ..|||||||+||+++. .....+.
T Consensus 79 ~~~l~~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~---~~~~~~l~~~l~~l~~-~~yD~viiD~pp~~~~--~~~~~l~ 152 (254)
T 3kjh_A 79 NPKVDGDLDKYGRYIDDKIFLIRMGEIKKGGSQCY---CRENSFLGSVVSALFL-DKKEAVVMDMGAGIEH--LTRGTAK 152 (254)
T ss_dssp SCCCTTSGGGSSEESSSSEEEEECCCCCCCCSSCC---HHHHHHHHHHHHHHHH-TCCSEEEEEECTTCTT--CCHHHHT
T ss_pred CCchhccHHhcccccCCeEEEEEecccccCCCCCC---cchHHHHHHHHHHhcc-CCCCEEEEeCCCcccH--HHHHHHH
Confidence 011123333 43332222211111 11125688999998 8 9999999999998874 4456677
Q ss_pred cCceEEEeeCCchhhHHHHHHHHHHhhhCCCCeeEEEEccccC
Q 028600 163 QLSGALIVSTPQDVALIDARKGITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 163 ~~d~vi~v~~~~~~~~~~~~~~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
.+|.+++|+.++..++..+.++++.+++.+.+.+++|+|++++
T Consensus 153 ~aD~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~~v~N~~~~ 195 (254)
T 3kjh_A 153 AVDMMIAVIEPNLNSIKTGLNIEKLAGDLGIKKVRYVINKVRN 195 (254)
T ss_dssp TCSEEEEEECSSHHHHHHHHHHHHHHHHHTCSCEEEEEEEECC
T ss_pred HCCEEEEecCCCHHHHHHHHHHHHHHHHcCCccEEEEEeCCCC
Confidence 8999999999999999999999999999998888999999874
No 11
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=99.95 E-value=2.9e-27 Score=188.12 Aligned_cols=180 Identities=19% Similarity=0.170 Sum_probs=124.0
Q ss_pred CccccccccccccccCCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccccCCcccccc-
Q 028600 13 GVRYYAAFGSKDLKIDGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKD- 91 (207)
Q Consensus 13 ~~r~~~~~~~~~~~~~~~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~~~~~~~~~- 91 (207)
.++..+.... ..+.+++|+|+ +|||+||||+|+|||.+||+ .|+||++||+|++. ++...++.....++.+.
T Consensus 27 ~l~~~l~~~~----~~~~~~vI~v~-~KGGvGKTT~a~nLA~~La~-~G~~VlliD~D~~~-~~~~~l~~~~~~~l~d~l 99 (307)
T 3end_A 27 SVQVHLDEAD----KITGAKVFAVY-GKGGIGKSTTSSNLSAAFSI-LGKRVLQIGCDPKH-DSTFTLTGSLVPTVIDVL 99 (307)
T ss_dssp -----------------CCEEEEEE-CSTTSSHHHHHHHHHHHHHH-TTCCEEEEEESSSC-CTTHHHHTSCCCCHHHHH
T ss_pred hhhhhhcccc----ccCCceEEEEE-CCCCccHHHHHHHHHHHHHH-CCCeEEEEeCCCCC-CHHHHhCccCCCCHHHHH
Confidence 4444444443 34458999999 89999999999999999999 99999999999976 44555554443333221
Q ss_pred ------------ccceecccccceeecccccCCCCCcccccchhhHHHHHHHHHh--cccCCCCEEEEcCCCCCCcchhh
Q 028600 92 ------------MKMVPIENYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSRE--VDWGNLDILVIDMPPGTGDAQLT 157 (207)
Q Consensus 92 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--l~~~~~D~IiiD~~~~~~~~~~~ 157 (207)
.........+++++|.+.......... ........+++. ++ +.||||||||||+++....
T Consensus 100 ~~~~~~~~~~~~~~~i~~~~~~l~vlp~~~~~~~~~~~~----~~~~~~~~~l~~~~~~-~~yD~ViiD~p~~~~~~~~- 173 (307)
T 3end_A 100 KDVDFHPEELRPEDFVFEGFNGVMCVEAGGPPAGTGCGG----YVVGQTVKLLKQHHLL-DDTDVVIFDVLGDVVCGGF- 173 (307)
T ss_dssp HHTTSCGGGCCHHHHCEECGGGCEEEECCCCCSSSSCTT----HHHHHHHHHHHHTTTT-SSCSEEEEEECCSSCCGGG-
T ss_pred hhccccccCCCHHHhhccCCCCceEEECCCcccccccch----hhhHHHHHHHHhhhcc-ccCCEEEEeCCCccchHHH-
Confidence 122233567888998876433222111 123334455555 66 8999999999998764333
Q ss_pred hhhhhcCceEEEeeCCchhhHHHHHHHHHHhhh----CCCCeeEEEEccccC
Q 028600 158 TTQTLQLSGALIVSTPQDVALIDARKGITMFSK----VQVPVCSFLAQIISS 205 (207)
Q Consensus 158 ~~~~~~~d~vi~v~~~~~~~~~~~~~~l~~l~~----~~~~~~g~v~N~~~~ 205 (207)
...+..+|.+|+|+.++..++..+.++++.+++ .+.+++|+|+|+++.
T Consensus 174 ~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~ 225 (307)
T 3end_A 174 AAPLQHADQAVVVTANDFDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRA 225 (307)
T ss_dssp GGGGGTCSEEEEEECSSHHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSC
T ss_pred HHHHHHCCEEEEEecCcHHHHHHHHHHHHHHHHhhhcCCCceEEEEEecCCc
Confidence 345568999999999999999999999999886 456778999999974
No 12
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=99.95 E-value=6.5e-28 Score=188.24 Aligned_cols=170 Identities=19% Similarity=0.101 Sum_probs=126.2
Q ss_pred CCCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccccC-------Cccccc-------cccc
Q 028600 29 GVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQ-------KPEVTK-------DMKM 94 (207)
Q Consensus 29 ~~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~~-------~~~~~~-------~~~~ 94 (207)
+++++|+|+|.|||+||||+|+|||.+|| +|+||++||+|++.+...+++.... ..++.+ ....
T Consensus 25 ~~~~vI~v~s~kGGvGKTT~a~~LA~~la--~g~~VlliD~D~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 102 (267)
T 3k9g_A 25 KKPKIITIASIKGGVGKSTSAIILATLLS--KNNKVLLIDMDTQASITSYFYEKIEKLGINFTKFNIYEILKENVDIDST 102 (267)
T ss_dssp -CCEEEEECCSSSSSCHHHHHHHHHHHHT--TTSCEEEEEECTTCHHHHHTHHHHHHTTCCTTTSSHHHHHTTSSCGGGG
T ss_pred CCCeEEEEEeCCCCchHHHHHHHHHHHHH--CCCCEEEEECCCCCCHHHHhhccccccccCcccccHHHHhcCCCCHHHh
Confidence 45899999999999999999999999999 5999999999998865554433211 111111 1122
Q ss_pred eecccccceeecccccCCCCCcccccchhhHHHHHHHHHhcccCCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCc
Q 028600 95 VPIENYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQ 174 (207)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~ 174 (207)
......+++++|.+........... ......+.++++.++ ..|||||||+||+++ .....++..+|.+|+|+.++
T Consensus 103 i~~~~~~l~~lp~~~~~~~~~~~~~--~~~~~~l~~~l~~l~-~~yD~viiD~pp~~~--~~~~~~l~~aD~vivv~~~~ 177 (267)
T 3k9g_A 103 IINVDNNLDLIPSYLTLHNFSEDKI--EHKDFLLKTSLGTLY-YKYDYIVIDTNPSLD--VTLKNALLCSDYVIIPMTAE 177 (267)
T ss_dssp CEEEETTEEEECCCGGGGGTTTCCC--TTGGGHHHHHHHTTC-TTCSEEEEEECSSCS--HHHHHHHTTCSEEEEEEESC
T ss_pred hccCCCCEEEEeCChHHHHHHHhhh--hhHHHHHHHHHHHhh-cCCCEEEEECcCCcc--HHHHHHHHHCCeEEEEeCCC
Confidence 2223478888887764432222111 123567889999998 999999999999887 44566677899999999999
Q ss_pred hhhHHHHHHHHHHhhhCCCC-eeEEEEccccC
Q 028600 175 DVALIDARKGITMFSKVQVP-VCSFLAQIISS 205 (207)
Q Consensus 175 ~~~~~~~~~~l~~l~~~~~~-~~g~v~N~~~~ 205 (207)
..++..+.++++.+++.+.. .+++|+|++++
T Consensus 178 ~~s~~~~~~~~~~l~~~~~~~~~~vv~N~~~~ 209 (267)
T 3k9g_A 178 KWAVESLDLFNFFVRKLNLFLPIFLIITRFKK 209 (267)
T ss_dssp TTHHHHHHHHHHHHHTTTCCCCEEEEEEEECT
T ss_pred hHHHHHHHHHHHHHHHHhccCCEEEEEecccC
Confidence 99999999999999988643 35799999854
No 13
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=99.95 E-value=3.3e-27 Score=177.18 Aligned_cols=137 Identities=20% Similarity=0.225 Sum_probs=111.4
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccccCCccccccccceecccccceeeccccc
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGFL 110 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (207)
||+|+|+|.|||+||||++.+||.++++ .|+||++||+|++.+. ..+++... .++++++.+
T Consensus 1 M~vi~v~s~kgG~GKTt~a~~la~~la~-~g~~vlliD~D~~~~~-~~~~~~~~---------------~~~~~~~~~-- 61 (206)
T 4dzz_A 1 MKVISFLNPKGGSGKTTAVINIATALSR-SGYNIAVVDTDPQMSL-TNWSKAGK---------------AAFDVFTAA-- 61 (206)
T ss_dssp CEEEEECCSSTTSSHHHHHHHHHHHHHH-TTCCEEEEECCTTCHH-HHHHTTSC---------------CSSEEEECC--
T ss_pred CeEEEEEeCCCCccHHHHHHHHHHHHHH-CCCeEEEEECCCCCCH-HHHHhcCC---------------CCCcEEecC--
Confidence 6899999999999999999999999999 9999999999987743 44433211 124444443
Q ss_pred CCCCCcccccchhhHHHHHHHHHhcccCCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCchhhHHHHHHHHHHhhh
Q 028600 111 VPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSK 190 (207)
Q Consensus 111 ~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~~~~~~~~~~l~~l~~ 190 (207)
...+.+.++.++ +.||+||||+||+.+ ......+..+|.+++|+.++..+ ..+.++++.+++
T Consensus 62 --------------~~~l~~~l~~l~-~~yD~viiD~~~~~~--~~~~~~l~~ad~viiv~~~~~~~-~~~~~~~~~l~~ 123 (206)
T 4dzz_A 62 --------------SEKDVYGIRKDL-ADYDFAIVDGAGSLS--VITSAAVMVSDLVIIPVTPSPLD-FSAAGSVVTVLE 123 (206)
T ss_dssp --------------SHHHHHTHHHHT-TTSSEEEEECCSSSS--HHHHHHHHHCSEEEEEECSCTTT-HHHHHHHHHHHT
T ss_pred --------------cHHHHHHHHHhc-CCCCEEEEECCCCCC--HHHHHHHHHCCEEEEEecCCHHH-HHHHHHHHHHHH
Confidence 156788888888 899999999999886 44466677899999999999999 999999999886
Q ss_pred CC-----CCeeEEEEccccC
Q 028600 191 VQ-----VPVCSFLAQIISS 205 (207)
Q Consensus 191 ~~-----~~~~g~v~N~~~~ 205 (207)
.+ .++ ++|+|+++.
T Consensus 124 ~~~~~~~~~~-~vv~N~~~~ 142 (206)
T 4dzz_A 124 AQAYSRKVEA-RFLITRKIE 142 (206)
T ss_dssp TSCGGGCCEE-EEEECSBCT
T ss_pred HHHhCCCCcE-EEEEeccCC
Confidence 64 344 999999974
No 14
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=99.95 E-value=5.1e-28 Score=187.95 Aligned_cols=165 Identities=25% Similarity=0.297 Sum_probs=117.3
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccccCCcccccc------ccceecccccce
Q 028600 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKD------MKMVPIENYGVK 103 (207)
Q Consensus 30 ~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~~~~~~~~~------~~~~~~~~~~~~ 103 (207)
.+++|+|+|.|||+||||+|+|||.+||+ .|+||++||+|+++ ++..+++.....++.+. ...... ..+++
T Consensus 5 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~-~g~~VlliD~D~~~-~~~~~l~~~~~~~l~~~l~~~~~~~~i~~-~~~l~ 81 (257)
T 1wcv_1 5 KVRRIALANQKGGVGKTTTAINLAAYLAR-LGKRVLLVDLDPQG-NATSGLGVRAERGVYHLLQGEPLEGLVHP-VDGFH 81 (257)
T ss_dssp CCCEEEECCSSCCHHHHHHHHHHHHHHHH-TTCCEEEEECCTTC-HHHHHTTCCCSCCHHHHHTTCCGGGTCEE-ETTEE
T ss_pred CCEEEEEEeCCCCchHHHHHHHHHHHHHH-CCCCEEEEECCCCc-CHHHHhCCCCCCCHHHHHcCCCHHHHccc-cCCEE
Confidence 48999999999999999999999999999 99999999999975 67777776554333211 111111 45677
Q ss_pred eecccccCCCCCcccccchhhHHHHHHHHHhcccCCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCchhhHHHHHH
Q 028600 104 CMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARK 183 (207)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~~~~~~~~~ 183 (207)
++|.+....... ...... ...+.++++. ..|||||||+||+++. .....+..+|.+|+|+.++..++..+.+
T Consensus 82 vlp~~~~~~~~~-~~l~~~--~~~l~~~l~~---~~yD~iiiD~pp~~~~--~~~~~l~~aD~viiv~~~~~~s~~~~~~ 153 (257)
T 1wcv_1 82 LLPATPDLVGAT-VELAGA--PTALREALRD---EGYDLVLLDAPPSLSP--LTLNALAAAEGVVVPVQAEYYALEGVAG 153 (257)
T ss_dssp EECCCTTHHHHH-HHHTTC--TTHHHHHCCC---TTCSEEEEECCSSCCH--HHHHHHHHCSEEEEEEESSTHHHHHHHH
T ss_pred EEeCChhHHHHH-HHHhhH--HHHHHHHhcc---cCCCEEEEeCCCCCCH--HHHHHHHHCCeEEEEecCchHHHHHHHH
Confidence 777653211000 000000 0344555443 5899999999998874 3455666899999999999999988888
Q ss_pred HHHHhhh------CCCCeeEEEEccccC
Q 028600 184 GITMFSK------VQVPVCSFLAQIISS 205 (207)
Q Consensus 184 ~l~~l~~------~~~~~~g~v~N~~~~ 205 (207)
+++.+++ .+.+++|+|+|+++.
T Consensus 154 ~~~~l~~~~~~~~~~~~~~gvv~N~~~~ 181 (257)
T 1wcv_1 154 LLATLEEVRAGLNPRLRLLGILVTMYDG 181 (257)
T ss_dssp HHHHHHHHHHHTCTTCEEEEEEEESBCT
T ss_pred HHHHHHHHHHHhCCCceEEEEEEEeECC
Confidence 7777764 256678999999975
No 15
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=99.95 E-value=7.3e-27 Score=182.39 Aligned_cols=171 Identities=19% Similarity=0.199 Sum_probs=119.0
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccccCCcccccc----------ccceecccc
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKD----------MKMVPIENY 100 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~~~~~~~~~----------~~~~~~~~~ 100 (207)
||+|+| ++|||+||||+|+|||.+||+ .|+||++||+|++.+...++++.....++.+. .........
T Consensus 1 M~vI~v-s~KGGvGKTT~a~nLA~~la~-~G~~VlliD~D~q~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~i~~~~~ 78 (269)
T 1cp2_A 1 MRQVAI-YGKGGIGKSTTTQNLTSGLHA-MGKTIMVVGCDPKADSTRLLLGGLAQKSVLDTLREEGEDVELDSILKEGYG 78 (269)
T ss_dssp CEEEEE-EECTTSSHHHHHHHHHHHHHT-TTCCEEEEEECTTSCSSHHHHTSCCCCCHHHHHHHHGGGCCHHHHCEECGG
T ss_pred CcEEEE-ecCCCCcHHHHHHHHHHHHHH-CCCcEEEEcCCCCCCHHHHhcCCCCcccHHHHHhccCcCCCHHHhhccCCC
Confidence 589999 689999999999999999999 99999999999999888777765544333221 111223456
Q ss_pred cceeecccccCCCCCcccccchhhHHHHHHHHHhcccCCCCEEEEcCCCCCCcchhhhh-hhhcCceEEEeeCCchhhHH
Q 028600 101 GVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTT-QTLQLSGALIVSTPQDVALI 179 (207)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~D~IiiD~~~~~~~~~~~~~-~~~~~d~vi~v~~~~~~~~~ 179 (207)
+++++|.+....... ...........+.+.++.++ ++||||||||||.+....+... ....+|.+++|+.++..++.
T Consensus 79 ~l~vl~~~~~~~~~~-~~~~~~~~~~~~~~~l~~l~-~~yD~iiiD~~~~~~~~~~~~~~~~~~aD~viiv~~~~~~s~~ 156 (269)
T 1cp2_A 79 GIRCVESGGPEPGVG-CAGRGIITSINMLEQLGAYT-DDLDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASGEMMALY 156 (269)
T ss_dssp GCEEEECCCCCTTSS-CHHHHHHHHHHHHHHTTCCC-TTCSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECSSHHHHH
T ss_pred CeeEEeCCCchhhcc-ccCcchhhHHHHHHHHHhhc-cCCCEEEEeCCchhhhhhhhhhhhHhhCCEEEEeecCchhhHH
Confidence 788888775332111 10011011122334445556 7899999999986653323111 12369999999999999999
Q ss_pred HHHHHHHHhhhC----CCCeeEEEEccccC
Q 028600 180 DARKGITMFSKV----QVPVCSFLAQIISS 205 (207)
Q Consensus 180 ~~~~~l~~l~~~----~~~~~g~v~N~~~~ 205 (207)
.+.++++.+++. +.+++|+|+|++++
T Consensus 157 ~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~ 186 (269)
T 1cp2_A 157 AANNISKGIQKYAKSGGVRLGGIICNSRKV 186 (269)
T ss_dssp HHHHHHHHHHHHBTTBBCEEEEEEEECCSS
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEeecCCc
Confidence 998888887653 56678999999865
No 16
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=99.95 E-value=9.5e-27 Score=183.67 Aligned_cols=171 Identities=21% Similarity=0.238 Sum_probs=118.0
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccccCCcccccc------------ccceecc
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKD------------MKMVPIE 98 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~~~~~~~~~------------~~~~~~~ 98 (207)
||+|+| ++|||+||||+|+|||.+||+ .|+||++||+|++.+...++++.....++.+. .......
T Consensus 2 MkvIav-s~KGGvGKTT~a~nLA~~La~-~G~rVlliD~D~q~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~i~~~ 79 (289)
T 2afh_E 2 MRQCAI-YGKGGIGKSTTTQNLVAALAE-MGKKVMIVGCDPKADSTRLILHSKAQNTIMEMAAEAGTVEDLELEDVLKAG 79 (289)
T ss_dssp CEEEEE-EECTTSSHHHHHHHHHHHHHH-TTCCEEEEEECSSSCSSHHHHCCSSCCBHHHHHHTTSSGGGCCHHHHCEEC
T ss_pred ceEEEE-eCCCcCcHHHHHHHHHHHHHH-CCCeEEEEecCCCCCHHHHhcCCCCCCcHHHHHhcccccccCCHHHhhccC
Confidence 689999 579999999999999999999 99999999999999888777765443332211 1112233
Q ss_pred cccceeecccccCCCCCcccccchhhHHHHHHHHHhcccCCCCEEEEcCCCCCCcchhhh-hhhhcCceEEEeeCCchhh
Q 028600 99 NYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTT-TQTLQLSGALIVSTPQDVA 177 (207)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~D~IiiD~~~~~~~~~~~~-~~~~~~d~vi~v~~~~~~~ 177 (207)
..++++++.+...+.... ..........+.+.+..++ ..||||||||||.+....+.. .....+|.+++|+.++..+
T Consensus 80 ~~~l~~l~~~~~~~~~~~-~~~~~~~~~~l~~~l~~l~-~~yD~ViID~~~~~~~~~~~~~~~~~~aD~viiv~~~~~~s 157 (289)
T 2afh_E 80 YGGVKCVESGGPEPGVGC-AGRGVITAINFLEEEGAYE-DDLDFVFYDVLGDVVCGGFAMPIRENKAQEIYIVCSGEMMA 157 (289)
T ss_dssp GGGCEEEECCCCCTTTCC-HHHHHHHHHHHHHHTTCSS-TTCSEEEEEEECSSCCTTTTHHHHTTCCCEEEEEECSSHHH
T ss_pred CCCeEEEeCCCccccccc-cchhhhHHHHHHHHHHhhc-cCCCEEEEeCCCccccchhhhhhhhhhCCEEEEEecCCHHH
Confidence 567888887653222111 0000011112333344455 789999999998665333311 1123699999999999999
Q ss_pred HHHHHHHHHHhhhC----CCCeeEEEEccccC
Q 028600 178 LIDARKGITMFSKV----QVPVCSFLAQIISS 205 (207)
Q Consensus 178 ~~~~~~~l~~l~~~----~~~~~g~v~N~~~~ 205 (207)
+..+.++++.+++. +.+++|+|+|+++.
T Consensus 158 ~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~ 189 (289)
T 2afh_E 158 MYAANNISKGIVKYANSGSVRLGGLICNSRNT 189 (289)
T ss_dssp HHHHHHHHHHHHHHHTTSCCEEEEEEEECCCC
T ss_pred HHHHHHHHHHHHHHHhcCCCceEEEEEecCCc
Confidence 99988888777643 66778999999864
No 17
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=99.94 E-value=6.1e-27 Score=189.26 Aligned_cols=194 Identities=18% Similarity=0.235 Sum_probs=122.4
Q ss_pred eEEEEeecCccccccccccccccCCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccccC
Q 028600 5 FRIFTRLGGVRYYAAFGSKDLKIDGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQ 84 (207)
Q Consensus 5 ~~~~~~~~~~r~~~~~~~~~~~~~~~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~~ 84 (207)
+++.|+++.+|+++.+..... .+++|+|+|+|||+||||+|++||.++|+ .|+||++||+|+ .++++..|+.+.
T Consensus 3 s~~~E~~r~lrt~~~~~~~~~----~~~~i~v~sgKGGvGKTTvA~~LA~~lA~-~G~rVLlvD~D~-~~~l~~~l~~~~ 76 (349)
T 3ug7_A 3 SKIKDSINSLRGITEKKLEKK----DGTKYIMFGGKGGVGKTTMSAATGVYLAE-KGLKVVIVSTDP-AHSLRDIFEQEF 76 (349)
T ss_dssp -------CTTHHHHHHHHHSS----CSCEEEEEECSSSTTHHHHHHHHHHHHHH-SSCCEEEEECCT-TCHHHHHHCSCC
T ss_pred HHHHHHHHHHhhhHHHhhccc----CCCEEEEEeCCCCccHHHHHHHHHHHHHH-CCCeEEEEeCCC-CCCHHHHhCCCC
Confidence 467899999999999877543 48999999999999999999999999999 999999999999 569999888764
Q ss_pred Cccccccc---cce-----ecc----------cccceeecccccCCCC--CcccccchhhHHHHHHHHHhcccCCCCEEE
Q 028600 85 KPEVTKDM---KMV-----PIE----------NYGVKCMSMGFLVPSS--SPVVWRGPMVMSALRKMSREVDWGNLDILV 144 (207)
Q Consensus 85 ~~~~~~~~---~~~-----~~~----------~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~l~~~~~D~Ii 144 (207)
........ ... +.. ......++.+...... .....++......+..+.+.+++.+||+||
T Consensus 77 ~~~~~~v~g~~~l~~~~id~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~pg~~e~~~~~~l~~~~~~~~yD~VI 156 (349)
T 3ug7_A 77 GHEPTKVKGYDNLYVVEIDPQKAMEEYKEKLKAQIEENPFLGEMLEDQLEMAALSPGTDESAAFDVFLKYMDSNEFDVVI 156 (349)
T ss_dssp CSSCEECTTCSSEEEEECCHHHHHHHHHHHHHHHGGGCHHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHCCSCSEEE
T ss_pred CcCccccccccceeeeccCHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHhccCCCHHHHHHHHHHHHHHHhCCCCEEE
Confidence 32211110 000 000 0000011111000000 000001111222233333333327999999
Q ss_pred EcCCCCCCcch-hhhh----------------------------------------------------------hhh--c
Q 028600 145 IDMPPGTGDAQ-LTTT----------------------------------------------------------QTL--Q 163 (207)
Q Consensus 145 iD~~~~~~~~~-~~~~----------------------------------------------------------~~~--~ 163 (207)
|||||+.+... +.+. .+. .
T Consensus 157 iDtpPt~~tlrlL~~p~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~L~d~~ 236 (349)
T 3ug7_A 157 FDTAPTGHTLRFLGMPEVMDKYMTKLIKLRKQMSGFMKMMKKLLPFGGKDEDIDYDKMLEELEKMKERIVRARNILSDPE 236 (349)
T ss_dssp ECSCCCTTGGGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC-------CHHHHHHHHHHHHHHHHHHHHHHTCTT
T ss_pred ECCCCChHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCCchHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99999543110 0000 000 1
Q ss_pred CceEEEeeCCchhhHHHHHHHHHHhhhCCCCeeEEEEcccc
Q 028600 164 LSGALIVSTPQDVALIDARKGITMFSKVQVPVCSFLAQIIS 204 (207)
Q Consensus 164 ~d~vi~v~~~~~~~~~~~~~~l~~l~~~~~~~~g~v~N~~~ 204 (207)
.+.+++|+.|+..++..+.+.++.+++.++++.|+|+|++.
T Consensus 237 ~~~~vlV~~p~~~~~~e~~r~~~~l~~~~i~v~gvV~N~~~ 277 (349)
T 3ug7_A 237 RTAFRLVVIPEEMSILESERAMKALQKYGIPIDAVIVNQLI 277 (349)
T ss_dssp TEEEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEEEEEC
T ss_pred CceEEEEECCCccHHHHHHHHHHHHHHCCCCeeEEEEcCCc
Confidence 47899999999999999999999999999999999999975
No 18
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=99.94 E-value=1.3e-26 Score=183.51 Aligned_cols=170 Identities=16% Similarity=0.225 Sum_probs=122.5
Q ss_pred CeEEEEEe--CCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCcc---ccccccC-Cccccc-------cccceec
Q 028600 31 KDVIAVAS--GKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVP---MMMKIDQ-KPEVTK-------DMKMVPI 97 (207)
Q Consensus 31 ~k~I~v~s--~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~---~~~~~~~-~~~~~~-------~~~~~~~ 97 (207)
+|+|+|++ .|||+||||+|+|||.++|+ .|+||++||+|++++... ..++... ..++.+ ...+.+
T Consensus 34 ~~~i~v~~~s~KGGvGKTT~a~nLA~~la~-~G~rVlliD~D~q~~~~~~l~~~~~~~~~~~~l~~~l~~~~~~~~~~~- 111 (298)
T 2oze_A 34 NEAIVILNNYFKGGVGKSKLSTMFAYLTDK-LNLKVLMIDKDLQATLTKDLAKTFKVELPRVNFYEGLKNGNLASSIVH- 111 (298)
T ss_dssp CSCEEEEECCSSSSSSHHHHHHHHHHHHHH-TTCCEEEEEECTTCHHHHHHTTTSCCCCCSSCHHHHHHHTCCGGGCEE-
T ss_pred CcEEEEEeccCCCCchHHHHHHHHHHHHHh-CCCeEEEEeCCCCCCHHHHHHHhccCCCCcccHHHHHhcCChhhhhcc-
Confidence 67899998 89999999999999999999 999999999999875322 2233321 111111 111222
Q ss_pred ccccceeecccccCCCCCccc--ccchhhHHHHHHHHHhcccCCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCch
Q 028600 98 ENYGVKCMSMGFLVPSSSPVV--WRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD 175 (207)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~l~~~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~ 175 (207)
...+++++|.+.......... +........+.++++.++ ..||||||||||+++. ....++..+|.+|+|+.++.
T Consensus 112 ~~~~l~vlp~~~~~~~~~~l~~~~~~~~~~~~l~~~l~~l~-~~yD~IiiD~pp~~~~--~~~~~l~~aD~viiv~~~~~ 188 (298)
T 2oze_A 112 LTDNLDLIPGTFDLMLLPKLTRSWTFENESRLLATLLAPLK-SDYDLIIIDTVPTPSV--YTNNAIVASDYVMIPLQAEE 188 (298)
T ss_dssp SSSSEEEECCCGGGGGHHHHTTTSCHHHHHTHHHHHHGGGG-GGCSEEEEEECSSCSH--HHHHHHHHCSEEEEEECGGG
T ss_pred cCCCeEEEeCCchHHHHHHHhhhhccccHHHHHHHHHHHHh-cCCCEEEEECCCCccH--HHHHHHHHCCeEEEEecCcH
Confidence 235778887765332111000 000112356888999998 8999999999998874 34556668999999999999
Q ss_pred hhHHHHHHHHHHhhh------CCCCeeEEEEccccC
Q 028600 176 VALIDARKGITMFSK------VQVPVCSFLAQIISS 205 (207)
Q Consensus 176 ~~~~~~~~~l~~l~~------~~~~~~g~v~N~~~~ 205 (207)
.++..+.++++.+++ .+.+++|+|+|+++.
T Consensus 189 ~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~n~~~~ 224 (298)
T 2oze_A 189 ESTNNIQNYISYLIDLQEQFNPGLDMIGFVPYLVDT 224 (298)
T ss_dssp CCHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEESCT
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEEECC
Confidence 999999998888876 367889999999975
No 19
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=99.94 E-value=1.5e-25 Score=178.32 Aligned_cols=169 Identities=19% Similarity=0.190 Sum_probs=118.5
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccccCCccccc------------cccceec
Q 028600 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTK------------DMKMVPI 97 (207)
Q Consensus 30 ~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~~~~~~~~------------~~~~~~~ 97 (207)
..|+|||+ +|||+||||+|+|||.+||+ .|+||++||+|++.++...+++......... .......
T Consensus 47 ~aKVIAIa-GKGGVGKTTtavNLA~aLA~-~GkkVllID~Dpq~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~ 124 (314)
T 3fwy_A 47 GAKVFAVY-GKGGIGKSTTSSNLSAAFSI-LGKRVLQIGCDPKHDSTFTLTGSLVPTVIDVLKDVDFHPEELRPEDFVFE 124 (314)
T ss_dssp CCEEEEEE-CSTTSSHHHHHHHHHHHHHH-TTCCEEEEEESSSCCTTHHHHTSCCCCHHHHHHHTTSCGGGCCHHHHCEE
T ss_pred CceEEEEE-CCCccCHHHHHHHHHHHHHH-CCCeEEEEecCCCCcccccccCCCCCcchhhHhhhccccccccHhHheee
Confidence 48999997 69999999999999999999 9999999999998876654443322211110 1123334
Q ss_pred ccccceeecccccCCCCCcccccchhhHHHHHHHHHh-cccCCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCchh
Q 028600 98 ENYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSRE-VDWGNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDV 176 (207)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-l~~~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~~ 176 (207)
...++.+++.+...+... +........+..+.+. +. +.||+|++|++++..+..+ ..++..+|.+++|+.++.+
T Consensus 125 ~~~~i~~v~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~-d~~D~v~iD~~~~~~~~~~-~~al~aAd~viIvt~~e~~ 199 (314)
T 3fwy_A 125 GFNGVMCVEAGGPPAGTG---CGGYVVGQTVKLLKQHHLL-DDTDVVIFDVLGDVVCGGF-AAPLQHADQAVVVTANDFD 199 (314)
T ss_dssp CGGGCEEEECCCCCTTCS---CTTHHHHHHHHHHHHTTTT-SSCSEEEEEECCSSCCGGG-GGGGGTCSEEEEEECSSHH
T ss_pred cCCCeEEEeCCCCcccch---hhhccHHHHHHHHHhcchh-hcCceEeeccCCcchhhhh-HhHHhhCCeEEEEeCCcHH
Confidence 456777887775333221 2222333444444332 34 7899999999988765444 2445689999999999999
Q ss_pred hHHHHHHHHHHhhhC----CCCeeEEEEccccC
Q 028600 177 ALIDARKGITMFSKV----QVPVCSFLAQIISS 205 (207)
Q Consensus 177 ~~~~~~~~l~~l~~~----~~~~~g~v~N~~~~ 205 (207)
++..+.++++.++.. +.++.|+|+|+...
T Consensus 200 Al~~~~~l~~~i~~~~~~~~~~l~GiI~n~~~~ 232 (314)
T 3fwy_A 200 SIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRA 232 (314)
T ss_dssp HHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSC
T ss_pred HHHHHHHHHHHHHHHhccCCCceEEEEEcCCCc
Confidence 999998887777644 45577899997653
No 20
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=99.93 E-value=1.2e-25 Score=185.06 Aligned_cols=174 Identities=18% Similarity=0.148 Sum_probs=105.7
Q ss_pred cCCCCeEEEEEeCCCCCcHHHHHHHHHHHHH------HhCCCeEEEEecCCCCCCccccccccCCccccc----------
Q 028600 27 IDGVKDVIAVASGKGGVGKSTTAVNLAVALA------SKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTK---------- 90 (207)
Q Consensus 27 ~~~~~k~I~v~s~kgG~GkTt~a~~LA~~la------~~~g~~VlliD~d~~~~~l~~~~~~~~~~~~~~---------- 90 (207)
..+.+++|+|+|+|||+||||+|+|||.+|| + .|+||++||+|+++ +++.+|+.........
T Consensus 107 ~~~~~~vIav~s~KGGvGKTT~a~nLA~~LA~~g~~~~-~g~rVlliD~D~~~-~l~~~l~~~~~~~~~~~~~~~~l~~~ 184 (403)
T 3ez9_A 107 IHKSPYVIFVVNLKGGVSKTVSTVTLAHALRVHQDLLR-HDLRILVIDLDPQA-SSTMFLDHTHSIGSILETAAQAMLNN 184 (403)
T ss_dssp HSCSCEEEEECCC--------CHHHHHHHHHSCGGGGG-GCCCEEEEEESSSS-GGGSCC----------CCHHHHHHHT
T ss_pred CCCCceEEEEEcCCCCchHHHHHHHHHHHHHhcchhhc-CCCeEEEEeCCCCC-ChhhhhCCCcccCcccccHHHHHHhc
Confidence 3456899999999999999999999999999 5 79999999999976 7888888664321100
Q ss_pred -------cccceecccccceeecccccCCCC---C-c---cccc-chhhHHHHHHHHHhcccCCCCEEEEcCCCCCCcch
Q 028600 91 -------DMKMVPIENYGVKCMSMGFLVPSS---S-P---VVWR-GPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQ 155 (207)
Q Consensus 91 -------~~~~~~~~~~~~~~~~~~~~~~~~---~-~---~~~~-~~~~~~~l~~~~~~l~~~~~D~IiiD~~~~~~~~~ 155 (207)
...+.+....+++++|.+...... . . ..+. .......++.+++.++ +.||||||||||+++ .
T Consensus 185 ~~~~~~~~~~i~~~~~~~l~~lp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ll~~l~-~~yD~VIID~pP~~~--~ 261 (403)
T 3ez9_A 185 LDAETLRKEVIRPTIVPGVDVIPASIDDGFVASQWRELVEEHLPGQNQYEILRRNIIDRVA-DDYDFIFIDTGPHLD--P 261 (403)
T ss_dssp CCHHHHHHTTSEECSSTTEEEECCCTTHHHHHHTHHHHHHHHSTTSCTTSHHHHHTGGGSG-GGCSEEEEEECSSCS--H
T ss_pred ccccccHHHHHhhcccCCceEEecCcchhhHHHHHHHHHHHhccccchHHHHHHHHHHHHh-hcCCEEEEECCCCcc--H
Confidence 122334455788888877532100 0 0 0000 0111223456778888 899999999999998 4
Q ss_pred hhhhhhhcCceEEEeeCCchhhHHHH-------HHHHHHhhhCC--CCeeEE--EEccccC
Q 028600 156 LTTTQTLQLSGALIVSTPQDVALIDA-------RKGITMFSKVQ--VPVCSF--LAQIISS 205 (207)
Q Consensus 156 ~~~~~~~~~d~vi~v~~~~~~~~~~~-------~~~l~~l~~~~--~~~~g~--v~N~~~~ 205 (207)
....++..+|.+|+|+.|+..++..+ .+.++.+++.+ .++.|+ ++|++++
T Consensus 262 ~~~~al~~aD~vliv~~p~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~l~giv~vl~~~~~ 322 (403)
T 3ez9_A 262 FLLNGLAASDLLLTPTPPAQVDFHSTLKYLTRLPEMLEQLEEEGVEPRLSASIGFMSKMTG 322 (403)
T ss_dssp HHHHHHHHCSEEEEEECSSHHHHHHHHHHHHTHHHHHHHHHHTTCCCCCCEEEEEECC---
T ss_pred HHHHHHHHCCEEEEEecCchhhHHHHHHHHHHHHHHHHHHHhcCCCCceeEEEEEEeccCC
Confidence 55667778999999999988765443 44555555544 344444 5666653
No 21
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=99.93 E-value=1.3e-25 Score=184.56 Aligned_cols=170 Identities=16% Similarity=0.165 Sum_probs=115.0
Q ss_pred cCCCCeEEEEEeCCCCCcHHHHHHHHHHHHHH-----hCCCeEEEEecCCCCCCccccccccCCcc-----ccc------
Q 028600 27 IDGVKDVIAVASGKGGVGKSTTAVNLAVALAS-----KCQLKVGLLDADVYGPSVPMMMKIDQKPE-----VTK------ 90 (207)
Q Consensus 27 ~~~~~k~I~v~s~kgG~GkTt~a~~LA~~la~-----~~g~~VlliD~d~~~~~l~~~~~~~~~~~-----~~~------ 90 (207)
..+++++|+|+|.|||+||||+|+|||.+||+ ..|+||++||+|+++ +++.+++.....+ +.+
T Consensus 104 ~~~~~~vIav~s~KGGvGKTT~a~nLA~~La~~~~~~~~g~rVlliD~D~q~-~l~~~l~~~~~~~~~~~~~~~~l~~~~ 182 (398)
T 3ez2_A 104 RYSEAYVIFISNLKGGVSKTVSTVSLAHAMRAHPHLLMEDLRILVIDLDPQS-SATMFLSHKHSIGIVNATSAQAMLQNV 182 (398)
T ss_dssp TCCSCEEEEECCSSSSSSHHHHHHHHHHHHHHCTTTGGGCCCEEEEEECTTC-HHHHHHSCHHHHSSCCSCHHHHHHHCC
T ss_pred CCCCCeEEEEEeCCCCccHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCCCC-ChhHHhCCccccccccccHHHHHHhhc
Confidence 34568999999999999999999999999994 269999999999965 7888887643211 100
Q ss_pred ------cccceecccccceeecccccCCC---CCcc----cc-cchhhHHHHHHHHHhcccCCCCEEEEcCCCCCCcchh
Q 028600 91 ------DMKMVPIENYGVKCMSMGFLVPS---SSPV----VW-RGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQL 156 (207)
Q Consensus 91 ------~~~~~~~~~~~~~~~~~~~~~~~---~~~~----~~-~~~~~~~~l~~~~~~l~~~~~D~IiiD~~~~~~~~~~ 156 (207)
...+.+....+++++|.+..... .... .. ........++++++.++ ..||||||||||++++ .
T Consensus 183 ~~~~~~~~~i~~~~~~~l~vlp~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~l~-~~yD~ViiD~pp~~~~--~ 259 (398)
T 3ez2_A 183 SREELLEEFIVPSVVPGVDVMPASIDDAFIASDWRELCNEHLPGQNIHAVLKENVIDKLK-SDYDFILVDSGPHLDA--F 259 (398)
T ss_dssp CHHHHHHHTCEECSSTTEEEECCCTTHHHHHHTHHHHHHHHSTTSCTTSHHHHHTHHHHT-TTCSEEEEEECSCCSH--H
T ss_pred cccccHHHHhhcccCCCceEecCCchhhhHHHHHHHHHHhhccccChHHHHHHHHHHHhh-ccCCEEEEeCCCCccH--H
Confidence 12234445578888887753210 0000 00 00111234567788888 8999999999999984 4
Q ss_pred hhhhhhcCceEEEeeCCchhhHHH-------HHHHHHHhhhCC--CCeeEEEE
Q 028600 157 TTTQTLQLSGALIVSTPQDVALID-------ARKGITMFSKVQ--VPVCSFLA 200 (207)
Q Consensus 157 ~~~~~~~~d~vi~v~~~~~~~~~~-------~~~~l~~l~~~~--~~~~g~v~ 200 (207)
...++..+|.+|+|+.|+..++.. +.+.++.+++.+ .++.|+|.
T Consensus 260 ~~~~l~~aD~vliv~~p~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~giv~ 312 (398)
T 3ez2_A 260 LKNALASANILFTPLPPATVDFHSSLKYVARLPELVKLISDEGCECQLATNIG 312 (398)
T ss_dssp HHHHHHHCSEEEEEECCSHHHHHHHHHHHHHHHHHHHHHHHTSCCCCCCCEEE
T ss_pred HHHHHHHCCEEEEEecCchhhHHHHHHHHHHHHHHHHHHHHcCCCCceeEEEE
Confidence 566677899999999998875544 444555555543 44555544
No 22
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=99.92 E-value=3.2e-25 Score=180.82 Aligned_cols=163 Identities=15% Similarity=0.195 Sum_probs=116.2
Q ss_pred CCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccccCCcccccc---------------c
Q 028600 28 DGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKD---------------M 92 (207)
Q Consensus 28 ~~~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~~~~~~~~~---------------~ 92 (207)
.+.+|+|+|+|+|||+||||+|+|||.+||+ .|+||++||+| ..++++.+++.+...++.+. .
T Consensus 140 ~~~~kvIav~s~KGGvGKTT~a~nLA~~La~-~g~rVlliD~D-~~~~l~~~lg~~~~~~l~d~l~~~~~~~~~~~~~l~ 217 (373)
T 3fkq_A 140 NDKSSVVIFTSPCGGVGTSTVAAACAIAHAN-MGKKVFYLNIE-QCGTTDVFFQAEGNATMSDVIYSLKSRKANLLLKLE 217 (373)
T ss_dssp TTSCEEEEEECSSTTSSHHHHHHHHHHHHHH-HTCCEEEEECC-TTCCHHHHCCCSCSCCHHHHHHHHHSCCSCHHHHHH
T ss_pred CCCceEEEEECCCCCChHHHHHHHHHHHHHh-CCCCEEEEECC-CCCCHHHHcCCCCCCCHHHHHhhhhcccccccccHH
Confidence 4568999999999999999999999999999 89999999999 77799999998876555432 1
Q ss_pred cceecccccceeecccccCCCCCcccccchhhHHHHHHHHHhccc-CCCCEEEEcCCCCCCcchhhhhhhhcCceEEEee
Q 028600 93 KMVPIENYGVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDW-GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVS 171 (207)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~-~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~ 171 (207)
........++++++.+....... ......+..+++.++. ..||+||||+|++.++ .....+..+|.+++|+
T Consensus 218 ~~i~~~~~~l~~l~~~~~~~~~~------~~~~~~~~~ll~~l~~~~~yD~VIID~p~~~~~--~~~~~l~~aD~vivv~ 289 (373)
T 3fkq_A 218 SCIKQSQEGVSYFSSTKVALDIL------EISYADIDTLIGNIQGMDNYDEIIVDLPFSLEI--EKLKLLSKAWRIIVVN 289 (373)
T ss_dssp HTCEECTTSCEECCCCSSGGGGG------GCCHHHHHHHHHHHHHTSCCSEEEEECCCCCCH--HHHHHHTTCSEEEEEE
T ss_pred HHhhcCCCCEEEecCCCChHhHH------hCCHHHHHHHHHHHHhcCCCCEEEEeCCCCCCH--HHHHHHHHCCEEEEEe
Confidence 11222336777777664222111 1234555555555531 5899999999998884 3455666899999999
Q ss_pred CCchhh---HHHHHHHHHHhhhCCCCeeEEEEcc
Q 028600 172 TPQDVA---LIDARKGITMFSKVQVPVCSFLAQI 202 (207)
Q Consensus 172 ~~~~~~---~~~~~~~l~~l~~~~~~~~g~v~N~ 202 (207)
.++..+ +..+.+.++.+.+. .+ +++|.|+
T Consensus 290 ~~~~~s~~~l~~~~~~l~~l~~~-~~-~~vv~N~ 321 (373)
T 3fkq_A 290 DGSQLSNYKFMRAYESVVLLEQN-DD-INIIRNM 321 (373)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTS-TT-CCCGGGE
T ss_pred cCCchHHHHHHHHHHHHHHhccc-CC-cEEEehh
Confidence 999988 55555666666542 22 3454443
No 23
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=99.92 E-value=4.1e-26 Score=179.87 Aligned_cols=163 Identities=18% Similarity=0.132 Sum_probs=115.4
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccccCCccccccccceecccccc-eeeccc
Q 028600 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGV-KCMSMG 108 (207)
Q Consensus 30 ~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 108 (207)
|+|+|+|+|.|||+||||+|+|||.+||+ .|+||++||+|+.++++..+++.... +.+. .......++ ++++.+
T Consensus 3 M~kvI~v~s~KGGvGKTT~a~nLA~~La~-~G~~VlliD~D~~q~~l~~~l~~~~~--~~~~--~~~~~~~~l~~vl~~~ 77 (286)
T 2xj4_A 3 ETRVIVVGNEKGGAGKSTIAVHLVTALLY-GGAKVAVIDLDLRQRTSARFFENRRA--WLDN--KKIELPEPLALNLSDN 77 (286)
T ss_dssp -CEEEEECCSSSCTTHHHHHHHHHHHHHH-TTCCEEEEECCTTTCHHHHHHHHHHH--HHHH--HTCCCCCCEEECSSSC
T ss_pred CCeEEEEEcCCCCCCHHHHHHHHHHHHHH-CCCcEEEEECCCCCCCHHHHhCCChh--HhHh--ccccCCCchheEeeCC
Confidence 47899999999999999999999999999 99999999999966788877765431 0000 000012244 555542
Q ss_pred c-cCCCCCcccccchhhHHHHHHHHHhcccCCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCchhhHHHHHHHHHH
Q 028600 109 F-LVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITM 187 (207)
Q Consensus 109 ~-~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~~~~~~~~~~l~~ 187 (207)
. ...... .......+.++++.++ ..|||||||+||+++ ......+..+|.+|+|+.++..++..+.++++.
T Consensus 78 ~~~~~~~~-----~~~~~~~l~~~l~~l~-~~yD~viiD~p~~~~--~~~~~~l~~aD~viiv~~~~~~~~~~~~~~~~~ 149 (286)
T 2xj4_A 78 DVALAERP-----EEEQVAGFEAAFARAM-AECDFILIDTPGGDS--AITRMAHGRADLVVTPMNDSFVDFDMLGTVDPV 149 (286)
T ss_dssp HHHHTTSC-----HHHHHHHHHHHHHHHH-HHCSEEEEECCSSCC--HHHHHHHHTCSEEEEEEESSHHHHTTTEEECTT
T ss_pred CCCCcChh-----hhhhHHHHHHHHHHHH-hcCCEEEEcCCCCcc--HHHHHHHHHCCEEEEEEcCCccHHHHHHHHHHH
Confidence 1 000011 1233567888888888 899999999999886 445666778999999999999888776655444
Q ss_pred -------------h---hh-------CC-CCeeEEEEccccCC
Q 028600 188 -------------F---SK-------VQ-VPVCSFLAQIISSM 206 (207)
Q Consensus 188 -------------l---~~-------~~-~~~~g~v~N~~~~~ 206 (207)
+ ++ .+ .+ +++|+|+++..
T Consensus 150 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~vV~N~~~~~ 191 (286)
T 2xj4_A 150 TLELTKPSLYSLTVWEGRKQRALSGQRQAMD-WVVLRNRLATT 191 (286)
T ss_dssp TCCEEEECHHHHHHHHHHHHHHHHCSSCCCE-EEEEEECCTTC
T ss_pred hhhccccchhhhhhhcchhhhhhccCCcccc-EEEEEeeecCC
Confidence 4 31 23 33 57999999753
No 24
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=99.92 E-value=6.8e-25 Score=165.37 Aligned_cols=131 Identities=29% Similarity=0.257 Sum_probs=103.2
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccccCCccccccccceecccccceeecccccC
Q 028600 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGFLV 111 (207)
Q Consensus 32 k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (207)
++|+|+|.|||+||||++.|||.++++ .| ||++||+|+++ ++..+++. .+ .+ .++++.
T Consensus 1 kvI~v~s~KGGvGKTT~a~~LA~~la~-~g-~VlliD~D~q~-~~~~~~~~-~~---------l~-----~~vi~~---- 58 (209)
T 3cwq_A 1 MIITVASFKGGVGKTTTAVHLSAYLAL-QG-ETLLIDGDPNR-SATGWGKR-GS---------LP-----FKVVDE---- 58 (209)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHT-TS-CEEEEEECTTC-HHHHHHHH-SC---------CS-----SEEEEG----
T ss_pred CEEEEEcCCCCCcHHHHHHHHHHHHHh-cC-CEEEEECCCCC-CHHHHhcC-CC---------CC-----cceeCH----
Confidence 489999999999999999999999999 99 99999999986 44444443 10 00 012211
Q ss_pred CCCCcccccchhhHHHHHHHHHhcccCCCCEEEEcCCCC-CCcchhhhhhhhcCceEEEeeCCchhhHHHHHHHHHHhhh
Q 028600 112 PSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPG-TGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSK 190 (207)
Q Consensus 112 ~~~~~~~~~~~~~~~~l~~~~~~l~~~~~D~IiiD~~~~-~~~~~~~~~~~~~~d~vi~v~~~~~~~~~~~~~~l~~l~~ 190 (207)
. .++.++ ..|||||||+||+ .+. .....+..+|.+|+|+.++..++..+.++++.+++
T Consensus 59 --------------~----~l~~l~-~~yD~viiD~p~~~~~~--~~~~~l~~aD~viiv~~~~~~~~~~~~~~~~~l~~ 117 (209)
T 3cwq_A 59 --------------R----QAAKYA-PKYQNIVIDTQARPEDE--DLEALADGCDLLVIPSTPDALALDALMLTIETLQK 117 (209)
T ss_dssp --------------G----GHHHHG-GGCSEEEEEEECCCSSS--HHHHHHHTSSEEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred --------------H----HHHHhh-hcCCEEEEeCCCCcCcH--HHHHHHHHCCEEEEEecCCchhHHHHHHHHHHHHh
Confidence 0 445566 8999999999998 663 44566778999999999999999999999999988
Q ss_pred C-CCCeeEEEEccccCC
Q 028600 191 V-QVPVCSFLAQIISSM 206 (207)
Q Consensus 191 ~-~~~~~g~v~N~~~~~ 206 (207)
. +.+ +++|+|+++..
T Consensus 118 ~~~~~-~~vv~N~~~~~ 133 (209)
T 3cwq_A 118 LGNNR-FRILLTIIPPY 133 (209)
T ss_dssp TCSSS-EEEEECSBCCT
T ss_pred ccCCC-EEEEEEecCCc
Confidence 5 455 69999999753
No 25
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=99.92 E-value=3.8e-25 Score=178.89 Aligned_cols=170 Identities=15% Similarity=0.179 Sum_probs=114.5
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHH--HhCCCeEEEEecCCCCCCccccccccCCcc------cccccc--ceecc--
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALA--SKCQLKVGLLDADVYGPSVPMMMKIDQKPE------VTKDMK--MVPIE-- 98 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la--~~~g~~VlliD~d~~~~~l~~~~~~~~~~~------~~~~~~--~~~~~-- 98 (207)
.++|+|+|+|||+||||+|+|||.++| + .|+||++||+|+. ++++..|+.+.... +.+... +.+..
T Consensus 17 ~~~i~v~sgKGGvGKTTvaanLA~~lA~~~-~G~rVLLvD~D~~-~~l~~~lg~~~~~~~~~v~gl~~l~~~~id~~~~l 94 (354)
T 2woj_A 17 THKWIFVGGKGGVGKTTSSCSIAIQMALSQ-PNKQFLLISTDPA-HNLSDAFGEKFGKDARKVTGMNNLSCMEIDPSAAL 94 (354)
T ss_dssp SCCEEEEEESTTSSHHHHHHHHHHHHHHHC-TTSCEEEEECCSS-CCHHHHHTSCCCSSCEECTTCSSEEEEECCHHHHH
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHhc-CCCeEEEEECCCC-CCHHHHhCCCCCCCceeecCCCceEEEecCHHHHH
Confidence 688999999999999999999999999 8 9999999999995 89999998764321 111100 00000
Q ss_pred ---cc----------------cceeecccccCCCCCcccccchhhHHHHHHHHHhcccC-------CCCEEEEcCCCC-C
Q 028600 99 ---NY----------------GVKCMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWG-------NLDILVIDMPPG-T 151 (207)
Q Consensus 99 ---~~----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~-------~~D~IiiD~~~~-~ 151 (207)
.. +++.++.+... .+.....++......+.++++.++ + .||+|||||||. .
T Consensus 95 ~~~~~~~~~~~~~~~~~~~g~~l~~l~~~~~~-~el~~~~pg~~e~~~l~~l~~~l~-~~~~~~~~~yD~IIiDtpPtG~ 172 (354)
T 2woj_A 95 KDMNDMAVSRANNNGSDGQGDDLGSLLQGGAL-ADLTGSIPGIDEALSFMEVMKHIK-RQEQGEGETFDTVIFDTAPTGH 172 (354)
T ss_dssp HHHHTC--------------------CCSSHH-HHHHTTSTTHHHHHHHHHHHHHHH-HHHHTSCCSCSEEEEECCCHHH
T ss_pred HHHHHHHHhhcccccccchhhhhhhccchhHH-HHHhcCCCChHHHHHHHHHHHHHh-cccccccCCCCEEEECCCCchH
Confidence 00 12222211000 000001223333467778887776 4 799999999993 2
Q ss_pred ---------------------Ccchhhh---------------------------hhhh--cCceEEEeeCCchhhHHHH
Q 028600 152 ---------------------GDAQLTT---------------------------TQTL--QLSGALIVSTPQDVALIDA 181 (207)
Q Consensus 152 ---------------------~~~~~~~---------------------------~~~~--~~d~vi~v~~~~~~~~~~~ 181 (207)
......+ ..+. .+|.+++|+.|+.+++..+
T Consensus 173 tLrlL~~p~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~L~d~~~~~~vlV~~pe~~si~ea 252 (354)
T 2woj_A 173 TLRFLQLPNTLSKLLEKFGEITNKLGPMLNSFMGAGNVDISGKLNELKANVETIRQQFTDPDLTTFVCVCISEFLSLYET 252 (354)
T ss_dssp HHHHHTHHHHHHHHHHCC---------------------CHHHHHHHHHHHHHHHHHHTCTTTEEEEEEEESSHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCCcchHHHH
Confidence 0000000 0011 5789999999999999999
Q ss_pred HHHHHHhhhCCCCeeEEEEcccc
Q 028600 182 RKGITMFSKVQVPVCSFLAQIIS 204 (207)
Q Consensus 182 ~~~l~~l~~~~~~~~g~v~N~~~ 204 (207)
.++++.+++.++++.++|+|++.
T Consensus 253 ~r~~~~L~~~g~~~~gvVvN~v~ 275 (354)
T 2woj_A 253 ERLIQELISYDMDVNSIIVNQLL 275 (354)
T ss_dssp HHHHHHHHHTTCCEEEEEEEEEC
T ss_pred HHHHHHHHHcCCCCCEEEEecCC
Confidence 99999999999999999999986
No 26
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=99.91 E-value=5.1e-24 Score=170.63 Aligned_cols=172 Identities=17% Similarity=0.244 Sum_probs=108.8
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccccCCcccccccc-c-----ee--------
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMK-M-----VP-------- 96 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~~~~~~~~~~~-~-----~~-------- 96 (207)
+++|+|+|+|||+||||+|++||.++|+ .|+||++||+|+ +++++..|+.+.......... . .+
T Consensus 13 m~~i~v~sgKGGvGKTTvA~~LA~~lA~-~G~rVLlvD~D~-~~~l~~~l~~~~~~~~~~v~~~l~~~~~d~~~~~~~~~ 90 (324)
T 3zq6_A 13 KTTFVFIGGKGGVGKTTISAATALWMAR-SGKKTLVISTDP-AHSLSDSLEREIGHTPTKITENLYAVEIDPEVAMEEYQ 90 (324)
T ss_dssp BCEEEEEEESTTSSHHHHHHHHHHHHHH-TTCCEEEEECCS-SCCHHHHHTSCCCSSCEEEETTEEEEECCHHHHHHHHH
T ss_pred CeEEEEEeCCCCchHHHHHHHHHHHHHH-CCCcEEEEeCCC-CcCHHHHhCCcCCCCCccCCCCceeeccChHHHHHHHH
Confidence 4899999999999999999999999999 999999999999 779999998764322211100 0 00
Q ss_pred --cccccceeeccccc-CCCC--CcccccchhhHHHHHHHHHhcccCCCCEEEEcCCCCCC------cchh---------
Q 028600 97 --IENYGVKCMSMGFL-VPSS--SPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTG------DAQL--------- 156 (207)
Q Consensus 97 --~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~l~~~~~~l~~~~~D~IiiD~~~~~~------~~~~--------- 156 (207)
........++.+.. .... .....++......+..+.+.+++..||+|||||||+.+ ....
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~pg~~e~~~~~~~~~~~~~~~yD~VIiDtpPt~~~l~lL~~p~~~~~~~~~l~ 170 (324)
T 3zq6_A 91 AKLQEQAAMNPGMGLDMLQDQMDMASMSPGIDEAAAFDQFLRYMTTDEYDIVIFDTAPTGHTLRLLSFPEIMDSWVGKMI 170 (324)
T ss_dssp HHC---------------------CTTSTTHHHHHHHHHHHHHHHHCCCSEEEEECCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcccchhhhHHHHHHhccCCChHHHHHHHHHHHHHHhCCCCEEEECCCCCHHHHHHHHhHHHHHHHHHHHH
Confidence 00000011222210 0000 00011122222233333333322799999999999421 0000
Q ss_pred ------------------------------------------hhhhhhc--CceEEEeeCCchhhHHHHHHHHHHhhhCC
Q 028600 157 ------------------------------------------TTTQTLQ--LSGALIVSTPQDVALIDARKGITMFSKVQ 192 (207)
Q Consensus 157 ------------------------------------------~~~~~~~--~d~vi~v~~~~~~~~~~~~~~l~~l~~~~ 192 (207)
....+.. .+.+++|+.|+..++..+.+.++.+++.+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~d~~~~~~vlV~~p~~~~~~~~~~~~~~l~~~g 250 (324)
T 3zq6_A 171 KIRRQIGSMAKAFKNILPFMGDEEEEDRALQDMEATKKQINAAREVMSDPERTSFKMVVIPEEMSIYESERAMKALEKYS 250 (324)
T ss_dssp HHHHHHHHHHTTTTTTSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCTTTEEEEEEECSSHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhhhccccCCcccchHHHHHHHHHHHHHHHHHHHhcCCCCCeEEEEeCCcccHHHHHHHHHHHHHHCC
Confidence 0001111 36999999999999999999999999999
Q ss_pred CCeeEEEEcccc
Q 028600 193 VPVCSFLAQIIS 204 (207)
Q Consensus 193 ~~~~g~v~N~~~ 204 (207)
+++.|+|+|++.
T Consensus 251 i~v~gvV~N~~~ 262 (324)
T 3zq6_A 251 IHADGVIVNQVL 262 (324)
T ss_dssp CCEEEEEEEEEC
T ss_pred CCccEEEEcCCc
Confidence 999999999975
No 27
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=99.91 E-value=2.7e-24 Score=172.50 Aligned_cols=185 Identities=15% Similarity=0.123 Sum_probs=117.6
Q ss_pred eecCccccccccccccccCCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccccCCc---
Q 028600 10 RLGGVRYYAAFGSKDLKIDGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKP--- 86 (207)
Q Consensus 10 ~~~~~r~~~~~~~~~~~~~~~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~~~~--- 86 (207)
+|+.+|+++.+-.. +..++|+|+|+|||+||||+|++||.++|+ .|+||++||+|++ ++++..|+.....
T Consensus 2 ~~r~lr~~l~~~~~-----~~~~~i~v~sgkGGvGKTTva~~LA~~lA~-~G~rVllvD~D~~-~~l~~~l~~~~~~~~~ 74 (329)
T 2woo_A 2 SFDPLPGTLENLLE-----QTSLKWIFVGGKGGVGKTTTSCSLAIQMSK-VRSSVLLISTDPA-HNLSDAFGTKFGKDAR 74 (329)
T ss_dssp -----CCSTHHHHH-----CTTCCEEEEECSSSSSHHHHHHHHHHHHHT-SSSCEEEEECCTT-CHHHHHHSSCCCSSCE
T ss_pred CcchhhccHHHHhc-----CCCCEEEEEeCCCCCcHHHHHHHHHHHHHH-CCCeEEEEECCCC-cCHHHHhCCcCCCCCe
Confidence 57788888887432 226789999999999999999999999999 9999999999998 7888888865321
Q ss_pred ---ccccccc--ceec-----cccc-----ce-eecccccCCCCCcccccchhhHHHHHHHHHhcccCCCCEEEEcCCCC
Q 028600 87 ---EVTKDMK--MVPI-----ENYG-----VK-CMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPG 150 (207)
Q Consensus 87 ---~~~~~~~--~~~~-----~~~~-----~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~D~IiiD~~~~ 150 (207)
++.+... +.+. .... +. +++... . ......++......+.++.+.+.+..||||||||||.
T Consensus 75 ~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l--~-~l~~~~pg~~e~~~~~~~~~~l~~~~yD~ViiDtpPt 151 (329)
T 2woo_A 75 KVPGFDNLSAMEIDPNLSIQEMTEQADQQNPNNPLSGMM--Q-DLAFTIPGIDEALAFAEILKQIKSMEFDCVIFDTAPT 151 (329)
T ss_dssp ECTTCSSEEEEECCHHHHHHHHHHTC--------CCHHH--H-HHHTTSTTHHHHHHHHHHHHHHHHTCCSEEEEECCSS
T ss_pred eccCCCCeeEEecCHHHHHHHHHHHHhhhhHHHHhhHHH--H-HHhcCCCCHHHHHHHHHHHHHHHhCCCCEEEECCCCc
Confidence 1111100 0000 0000 10 111000 0 0000112233334556666666536899999999993
Q ss_pred CCc-chhhh----------------------hh-------------------------------hh--cCceEEEeeCCc
Q 028600 151 TGD-AQLTT----------------------TQ-------------------------------TL--QLSGALIVSTPQ 174 (207)
Q Consensus 151 ~~~-~~~~~----------------------~~-------------------------------~~--~~d~vi~v~~~~ 174 (207)
... ..+.+ .. +. ..+.+++|+.|+
T Consensus 152 g~~l~lL~~p~~~~~~l~~l~~~~~~~~~~~~~l~~~~g~~~~~d~~~~~l~~~~~~~~~~~~~l~d~~~t~~vlV~~pe 231 (329)
T 2woo_A 152 GHTLRFLNFPTVLEKALGKLGGLSSRFGPMINQMGSIMGVNANEQDLFGKMESMRANISEVNKQFKNPDLTTFVCVCISE 231 (329)
T ss_dssp SCTTTGGGHHHHHHHHHHHHHTSCSSCHHHHHHHHHHHC-----CCTTHHHHHHHHHHHHHHHHHTCTTTEEEEEEEESS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEEeCCC
Confidence 220 00000 00 00 135799999999
Q ss_pred hhhHHHHHHHHHHhhhCCCCeeEEEEcccc
Q 028600 175 DVALIDARKGITMFSKVQVPVCSFLAQIIS 204 (207)
Q Consensus 175 ~~~~~~~~~~l~~l~~~~~~~~g~v~N~~~ 204 (207)
..++..+.++++.+++.++++.|+|+|++.
T Consensus 232 ~~~i~ea~~~~~~L~~~gi~v~gvVvN~~~ 261 (329)
T 2woo_A 232 FLSLYETERMIQELTSYEIDTHNIVVNQLL 261 (329)
T ss_dssp HHHHHHHHHHHHHHHHHTCEEEEEEEEEEC
T ss_pred cchHHHHHHHHHHHHHCCCCCCEEEEeCCc
Confidence 999999999999999999999999999986
No 28
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=99.90 E-value=8.8e-24 Score=169.36 Aligned_cols=184 Identities=18% Similarity=0.146 Sum_probs=110.6
Q ss_pred ccccccccccccccCCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccccCCccccccc-
Q 028600 14 VRYYAAFGSKDLKIDGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDM- 92 (207)
Q Consensus 14 ~r~~~~~~~~~~~~~~~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~~~~~~~~~~- 92 (207)
+|+++.+-... .+++|.|+|+|||+||||+|++||.++|+ .|+||++||+|++ ++++..|+...........
T Consensus 3 l~~~l~~~l~~-----~~~~i~~~sgkGGvGKTt~a~~lA~~la~-~g~~vllid~D~~-~~l~~~l~~~~~~~~~~v~~ 75 (334)
T 3iqw_A 3 MEPTLQSILDQ-----RSLRWIFVGGKGGVGKTTTSCSLAIQLAK-VRRSVLLLSTDPA-HNLSDAFSQKFGKEARLVEG 75 (334)
T ss_dssp CCSSSHHHHHC-----TTCCEEEEECSTTSSHHHHHHHHHHHHTT-SSSCEEEEECCSS-CHHHHHHTSCCCSSCEECTT
T ss_pred ccccHHHHhcC-----CCeEEEEEeCCCCccHHHHHHHHHHHHHh-CCCcEEEEECCCC-CChhHHhccccCCCceeecC
Confidence 45555543322 25667788999999999999999999999 9999999999975 4778788754321111100
Q ss_pred -------cceeccc--ccceeec-------ccccCCCCCcccccchhhHHHHHHHHHhcccCCCCEEEEcCCCCCC----
Q 028600 93 -------KMVPIEN--YGVKCMS-------MGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTG---- 152 (207)
Q Consensus 93 -------~~~~~~~--~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~D~IiiD~~~~~~---- 152 (207)
.+.+... ..+.... .+...........++......+.++.+.+.+..||+|||||||...
T Consensus 76 ~~~L~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~Pg~~e~~~~~~~~~~~~~~~yD~VIiDtpPtg~tLrl 155 (334)
T 3iqw_A 76 FDNLYAMEIDPNGSMQDLLAGQTGDGDAGMGGVGVMQDLAYAIPGIDEAMSFAEVLKQVNSLSYETIVFDTAPTGHTLRF 155 (334)
T ss_dssp CSSEEEEECCC--------------------------------CCHHHHHHHHHHHHHHHTSSCSEEEEECCCHHHHHHH
T ss_pred CCCceeeecCHHHHHHHHHHHhhcccccccccchhhHHhhcCCCCHHHHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHH
Confidence 0000000 0000000 0000000000011222333334444444433899999999999211
Q ss_pred --cch-h--------------------------------------------------hhhhhh--cCceEEEeeCCchhh
Q 028600 153 --DAQ-L--------------------------------------------------TTTQTL--QLSGALIVSTPQDVA 177 (207)
Q Consensus 153 --~~~-~--------------------------------------------------~~~~~~--~~d~vi~v~~~~~~~ 177 (207)
-.. + ....+. ..+.+++|+.|+..+
T Consensus 156 L~lp~~l~~~l~~~~~~~~~~~~~~~~~~~~~g~~p~~~~~~~~~~~l~~~~~~~~~~~~~L~dp~~t~~vlVt~pe~~~ 235 (334)
T 3iqw_A 156 LQFPTVLEKALAKVSQLSGQYGSLLNGILGGSGTLPNGQTLSDVMEKLDSLRVTISEVNAQFKDERLTTFVCVCIPEFLS 235 (334)
T ss_dssp HTHHHHC-----------------------------------CCHHHHHHHHHHHHHHHHHHTCTTTEEEEEEECSSHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHHHHHHhhCCCCeeEEEEECCCccH
Confidence 000 0 000011 245899999999999
Q ss_pred HHHHHHHHHHhhhCCCCeeEEEEcccc
Q 028600 178 LIDARKGITMFSKVQVPVCSFLAQIIS 204 (207)
Q Consensus 178 ~~~~~~~l~~l~~~~~~~~g~v~N~~~ 204 (207)
+..+.++++.+++.++++.|+|+|++.
T Consensus 236 ~~ea~r~~~~L~~~gi~v~gvVvN~~~ 262 (334)
T 3iqw_A 236 LYETERMIQELANYGIDTHCIVVNQLL 262 (334)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEEEEEC
T ss_pred HHHHHHHHHHHHHCCCCccEEEECCCc
Confidence 999999999999999999999999975
No 29
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=99.88 E-value=5.1e-23 Score=165.72 Aligned_cols=185 Identities=15% Similarity=0.107 Sum_probs=102.5
Q ss_pred CccccccccccccccCCCCeEEEEEeCCCCCcHHHHHHHHHHHHH--HhCCCeEEEEecCCCCCCccccccccCCccccc
Q 028600 13 GVRYYAAFGSKDLKIDGVKDVIAVASGKGGVGKSTTAVNLAVALA--SKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTK 90 (207)
Q Consensus 13 ~~r~~~~~~~~~~~~~~~~k~I~v~s~kgG~GkTt~a~~LA~~la--~~~g~~VlliD~d~~~~~l~~~~~~~~~~~~~~ 90 (207)
.+++++..-... ..+.|.|+++|||+||||+|++||.++| + .|+||++||+|+ +++++.+|+.........
T Consensus 4 ~l~~~L~~~l~~-----~~~~i~~~~gkGGvGKTt~a~~lA~~la~~~-~g~~vllid~D~-~~~l~~~~~~~~~~~~~~ 76 (348)
T 3io3_A 4 ELEPTLESIVQH-----DSLKWIFVGGKGGVGKTTTSSSVAVQLALAQ-PNEQFLLISTDP-AHNLSDAFCQKFGKDARK 76 (348)
T ss_dssp SCCSSSHHHHTC-----TTCSEEEEECSTTSSHHHHHHHHHHHHHHHC-TTSCEEEEECCS-SCHHHHHHTSCCCSSCEE
T ss_pred ccchhHHHHhcC-----CCcEEEEEeCCCCCcHHHHHHHHHHHHHHhc-CCCeEEEEECCC-CCChHHHhccccCCCcee
Confidence 455555443322 2445666688999999999999999999 8 999999999996 568888888643221111
Q ss_pred cc---c-----ceeccc--cccee------e---cccccCCCCCcccccchhhHHHHHHHHHhccc------------CC
Q 028600 91 DM---K-----MVPIEN--YGVKC------M---SMGFLVPSSSPVVWRGPMVMSALRKMSREVDW------------GN 139 (207)
Q Consensus 91 ~~---~-----~~~~~~--~~~~~------~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~------------~~ 139 (207)
.. . +.+... ..... . +...... ......++......+.++++.+++ ..
T Consensus 77 v~~~~~L~~~~id~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~Pg~~e~~~~~~~~~~l~~~~~~~~~~~~~~~~ 155 (348)
T 3io3_A 77 VEGLPNLSCMEIDPEAAMSDLQQQASQYNNDPNDPLKSMMS-DMTGSIPGIDEALSFMEVLKHIKNQKVLEGEDNSNAIS 155 (348)
T ss_dssp ETTEEEEEEEECCC------------------------------------------------------------------
T ss_pred ccCCCCceEEeeCHHHHHHHHHHHHHhhcccccccHhHHhH-HhhcCCCCHHHHHHHHHHHHHHHhccccccccccccCC
Confidence 10 0 000000 00000 0 0000000 000001122223345555555541 27
Q ss_pred CCEEEEcCCCCCCcch-h------------------------------------------------hhhhh--hcCceEE
Q 028600 140 LDILVIDMPPGTGDAQ-L------------------------------------------------TTTQT--LQLSGAL 168 (207)
Q Consensus 140 ~D~IiiD~~~~~~~~~-~------------------------------------------------~~~~~--~~~d~vi 168 (207)
||+|||||||+...-. + ....+ ...+.++
T Consensus 156 yD~VIiDtpPtg~tLrlL~lP~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~L~dp~~t~~v 235 (348)
T 3io3_A 156 YKTIIFDTAPTGHTLRFLQLPSTLEKLLSKFKDLSGKLGPMLSMMGGGQQQDIFEKLNEVQKNVSEVNEQFTNPELTTFI 235 (348)
T ss_dssp CCEEEEECSSHHHHHHHTC---------------------------------------------CHHHHHHTCTTTEEEE
T ss_pred CCEEEEcCCCchHHHHHHhhHHHHHHHHHHHHHHHHhhhHHHHhcccCchHHHHHHHHHHHHHHHHHHHHHhCcCceEEE
Confidence 9999999999311000 0 00001 1236899
Q ss_pred EeeCCchhhHHHHHHHHHHhhhCCCCeeEEEEccccC
Q 028600 169 IVSTPQDVALIDARKGITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 169 ~v~~~~~~~~~~~~~~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
+|+.|+..++..+.++++.+++.++++.|+|+|++..
T Consensus 236 lVt~pe~~~~~ea~r~~~~L~~~gi~v~gvVvN~~~~ 272 (348)
T 3io3_A 236 CVCISEFLSLYETERMIQELMSYNMDVNSIVVNQLLF 272 (348)
T ss_dssp EEEESSHHHHHHHHHHHHHHHHTTCCCCEEEEEEECC
T ss_pred EEecCCccHHHHHHHHHHHHHHCCCCccEEEEcCCcc
Confidence 9999999999999999999999999999999999863
No 30
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=99.87 E-value=3.7e-22 Score=151.57 Aligned_cols=166 Identities=10% Similarity=0.060 Sum_probs=103.4
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCcccc-ccccCC-cc-ccccccce-ecccccceeecc
Q 028600 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMM-MKIDQK-PE-VTKDMKMV-PIENYGVKCMSM 107 (207)
Q Consensus 32 k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~-~~~~~~-~~-~~~~~~~~-~~~~~~~~~~~~ 107 (207)
|+|+|+|.|||+||||+++|||.+|++ +|+||+++| ++....... .+.... .. +....... .........+..
T Consensus 2 k~I~v~s~kgGvGKTt~a~nLa~~la~-~G~rVll~d--p~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 78 (224)
T 1byi_A 2 KRYFVTGTDTEVGKTVASCALLQAAKA-AGYRTAGYK--PVASGSEKTPEGLRNSDALALQRNSSLQLDYATVNPYTFAE 78 (224)
T ss_dssp EEEEEEESSTTSCHHHHHHHHHHHHHH-TTCCEEEEC--SEEESCBCCTTSCBCHHHHHHHHTCSSCCCHHHHCSEEESS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHH-CCCCEEEEc--ceecCCccCCCCcChHHHHHHHHHhCCCCChhhcccEEeCC
Confidence 789999999999999999999999999 999999986 332211110 000000 00 00000000 000000011100
Q ss_pred cccCCCCCc---ccccchhhHHHHHHHHHhcccCCCCEEEEcCCCCCCcch---hh-hhhhhc-CceEEEeeCCchhhHH
Q 028600 108 GFLVPSSSP---VVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQ---LT-TTQTLQ-LSGALIVSTPQDVALI 179 (207)
Q Consensus 108 ~~~~~~~~~---~~~~~~~~~~~l~~~~~~l~~~~~D~IiiD~~~~~~~~~---~~-~~~~~~-~d~vi~v~~~~~~~~~ 179 (207)
+ .... ...........+.+.++.++ ++||||||||||+++... .. ...... .+.+++|+.++..++.
T Consensus 79 ~----~~~~~~~~~~~~~~~~~~l~~~l~~l~-~~yD~viID~p~~l~~p~~~~~~~~~l~~~~~~~vi~v~~~~~~~~~ 153 (224)
T 1byi_A 79 P----TSPHIISAQEGRPIESLVMSAGLRALE-QQADWVLVEGAGGWFTPLSDTFTFADWVTQEQLPVILVVGVKLGCIN 153 (224)
T ss_dssp C----SCHHHHHHHHTCCCCHHHHHHHHHHHH-TTCSEEEEECSSSTTCEEETTEEHHHHHHHHTCCEEEEEECSTTHHH
T ss_pred C----CCHHHHHHHcCCCCCHHHHHHHHHHHH-HhCCEEEEEcCCccccCCCcchhHHHHHHHhCCCEEEEecCCCCcHH
Confidence 0 0000 00001124677888899998 899999999999876321 11 111111 2358999999999999
Q ss_pred HHHHHHHHhhhCCCCeeEEEEccccC
Q 028600 180 DARKGITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 180 ~~~~~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
++...++.+++.+.+++|+|+|+++.
T Consensus 154 ~~~~~i~~l~~~~~~i~gvvlN~~~~ 179 (224)
T 1byi_A 154 HAMLTAQVIQHAGLTLAGWVANDVTP 179 (224)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEECCSS
T ss_pred HHHHHHHHHHHCCCcEEEEEEeCCCC
Confidence 99999999998899999999999875
No 31
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=99.83 E-value=8.8e-21 Score=163.02 Aligned_cols=172 Identities=13% Similarity=0.132 Sum_probs=110.6
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccccCCccccccc---cceecc---------
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDM---KMVPIE--------- 98 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~~~~~~~~~~---~~~~~~--------- 98 (207)
++.|.|+++|||+||||+|++||.++|+ .|+||++||+|+ .++++..|+.+......... .+....
T Consensus 7 ~~~i~~~sgkGGvGKTT~a~~lA~~lA~-~G~rVLlvd~D~-~~~l~~~l~~~~~~~~~~v~~~~~l~~~~~d~~~~~~~ 84 (589)
T 1ihu_A 7 IPPYLFFTGKGGVGKTSISCATAIRLAE-QGKRVLLVSTDP-ASNVGQVFSQTIGNTIQAIASVPGLSALEIDPQAAAQQ 84 (589)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHHHH-TTCCEEEEECCT-TCCHHHHTTSCCCSSCEECTTSTTEEEEECCHHHHHHH
T ss_pred CCEEEEEeCCCcCHHHHHHHHHHHHHHH-CCCcEEEEECCC-CcCHHHHhCCcccCCCceeccchhhhhccCCHHHHHHH
Confidence 3456677999999999999999999999 999999999999 48999999876543221110 000000
Q ss_pred ------cccceeecccccCCC--CCc-ccccchhhHHHHHHHHH--hcccCCCCEEEEcCCCCCCcch-h----------
Q 028600 99 ------NYGVKCMSMGFLVPS--SSP-VVWRGPMVMSALRKMSR--EVDWGNLDILVIDMPPGTGDAQ-L---------- 156 (207)
Q Consensus 99 ------~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~l~~~~~--~l~~~~~D~IiiD~~~~~~~~~-~---------- 156 (207)
......++.+..... ... ....+....+.+.++++ .++ .+||+|||||||....-. +
T Consensus 85 ~~~~~~~~~~~~lp~~~~~~~~~~l~~~~~~e~~~~~~~~~ll~~~~l~-~~yD~VIiDt~P~~~~lrll~lP~~~~~~l 163 (589)
T 1ihu_A 85 YRARIVDPIKGVLPDDVVSSINEQLSGACTTEIAAFDEFTGLLTDASLL-TRFDHIIFDTAPTGHTIRLLQLPGAWSSFI 163 (589)
T ss_dssp HHHHHHGGGTTTSCHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHCTTHH-HHCSEEEESSCCCHHHHHHHHCGGGGTCCC
T ss_pred HHHHHHHHHHHhcchhhHHHHHHHhcccchHHHHHHHHHHHHHhchhhc-ccCCEEEECCCCchhHHHHHHhHHHHHHHH
Confidence 000001110000000 000 00001122455677777 566 789999999998522100 0
Q ss_pred -------------------------hhhhhh--cCceEEEeeCCchhhHHHHHHHHHHhhhCCCCeeEEEEccccC
Q 028600 157 -------------------------TTTQTL--QLSGALIVSTPQDVALIDARKGITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 157 -------------------------~~~~~~--~~d~vi~v~~~~~~~~~~~~~~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
....+. ..+.+++|+.++..++..+.++++.+++.+.++.|+|+|++..
T Consensus 164 ~~~~~~~~~l~~~~~l~~~~~~~~~~~~~l~d~~~t~vvlV~~~~~~~~~~~~~~~~~L~~~g~~~~gvVlN~v~~ 239 (589)
T 1ihu_A 164 DSNPEGASCLGPMAGLEKQREQYAYAVEALSDPKRTRLVLVARLQKSTLQEVARTHLELAAIGLKNQYLVINGVLP 239 (589)
T ss_dssp ------CCCCGGGGGCCSCHHHHHHHHHHHHCTTTEEEEEEEESCHHHHHHHHHHHHHHHHHTCCCEEEEEEEECC
T ss_pred HHhhccccccchhhhhhHHHHHHHHHHHHhcCCCCcEEEEEeCCCccHHHHHHHHHHHHHhCCCCCCEEEEcCCcC
Confidence 000110 1237999999999999999999999999999999999999864
No 32
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal alpha-beta the C-terminal all beta domain., structural genomics; 2.00A {Nostoc SP}
Probab=99.81 E-value=2.2e-19 Score=145.57 Aligned_cols=168 Identities=17% Similarity=0.181 Sum_probs=104.6
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccccCCccccccc-cc-----ee-----cccc
Q 028600 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDM-KM-----VP-----IENY 100 (207)
Q Consensus 32 k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~~~~~~~~~~-~~-----~~-----~~~~ 100 (207)
..|.++++|||+||||+|++||.++|+ .|+||++||+ + +++++..|+........... .. .+ ....
T Consensus 2 ~~i~~~~gkGG~GKTt~a~~la~~la~-~g~~vllvd~-~-~~~l~~~~~~~~~~~~~~v~~~L~~~eid~~~~~~~~~~ 78 (374)
T 3igf_A 2 ALILTFLGKSGVARTKIAIAAAKLLAS-QGKRVLLAGL-A-EPVLPLLLEQTLTPDPQQIAPNLEVVQFQSSVLLERNWE 78 (374)
T ss_dssp CEEEEEECSBHHHHHHHHHHHHHHHHH-TTCCEEEEEC-S-CSHHHHHHTSCCCSSCEEEETTEEEEECCHHHHHHHHHH
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHHHHH-CCCCeEEEeC-C-CCChHHhhCCCCCCCcccccccccccccCHHHHHHHHHH
Confidence 356677999999999999999999999 9999999999 4 66888888876432211110 00 00 0000
Q ss_pred c-----ceeecccccCCCCCc--ccccchhhHHHHHHHHHhcccCCCCEEEEcCCCCCCc--------------------
Q 028600 101 G-----VKCMSMGFLVPSSSP--VVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGD-------------------- 153 (207)
Q Consensus 101 ~-----~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~l~~~~~D~IiiD~~~~~~~-------------------- 153 (207)
. -..++.......... ...++......+..+.+.+.+..||+|||||||....
T Consensus 79 ~~~~~~~~~l~~~~~~~~~~~el~~~Pg~~E~~~l~~~~~~~~~~~yD~VIvDtpPtg~tLrlL~lP~~l~~~l~~l~~~ 158 (374)
T 3igf_A 79 EVKKLEAQYLRTPIIKEVYGQELVVLPGMDSALALNAIREYDASGKYDTIVYDGTGDAFTLRMLGLPESLSWYVRRFRQL 158 (374)
T ss_dssp HHHHHHHHHCSSCSSSSSCGGGCCCCTTHHHHHHHHHHHHHHHTTCCSEEEEECCCSHHHHHHHTHHHHHHHHHHHTTSC
T ss_pred HHHHHHHhhcccccccccchhhhccCCCHHHHHHHHHHHHHHhccCCCEEEEeCCCChHHhhhhhhhHHHHHHHHHHHHH
Confidence 0 001111111100100 1122223333344444443337899999999993110
Q ss_pred ------------chh-------------------------------hhhhhhc--CceEEEeeCCchhhHHHHHHHHHHh
Q 028600 154 ------------AQL-------------------------------TTTQTLQ--LSGALIVSTPQDVALIDARKGITMF 188 (207)
Q Consensus 154 ------------~~~-------------------------------~~~~~~~--~d~vi~v~~~~~~~~~~~~~~l~~l 188 (207)
..+ ....+.. ...+++|+.|+..++..+.+.++.+
T Consensus 159 ~~~~~~g~~~~~~~~~~p~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~L~dp~~t~~vlVt~pe~~sl~ea~r~~~~L 238 (374)
T 3igf_A 159 FVNSDLGKTIAESPLIQPLISSFFNVNWTADNFAQPTNQVNNFLDKGKEALADPKRVAAFLVTTADPLEVVSVRYLWGSA 238 (374)
T ss_dssp C-----------------------------------CHHHHHHHHHHHHHHHCTTTEEEEEEECSCHHHHHHHHHHHHHH
T ss_pred HhhhccccccccchhhhhhhhhhccCCCchHHHHHHHHHHHHHHHHHHHHHhccCCeEEEEEECCCccHHHHHHHHHHHH
Confidence 000 0011111 2479999999999999999999999
Q ss_pred hhCCCCeeEEEEcc
Q 028600 189 SKVQVPVCSFLAQI 202 (207)
Q Consensus 189 ~~~~~~~~g~v~N~ 202 (207)
.+.++++.|+|+|+
T Consensus 239 ~~~gi~v~gvVvN~ 252 (374)
T 3igf_A 239 QQIGLTIGGVIQVS 252 (374)
T ss_dssp HHHTCCEEEEEECC
T ss_pred HHcCCCccEEEEcC
Confidence 99999999999998
No 33
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=99.81 E-value=3.5e-20 Score=159.28 Aligned_cols=175 Identities=18% Similarity=0.218 Sum_probs=103.1
Q ss_pred CCCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccccCCc-cccccccceecccccceeecc
Q 028600 29 GVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKP-EVTKDMKMVPIENYGVKCMSM 107 (207)
Q Consensus 29 ~~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 107 (207)
..+++|.|+++|||+||||+|++||..+++ .|++|+++|+|++ +++...++..... .................+++.
T Consensus 324 ~~~~~~~~~~~~~g~Gktt~a~~lA~~l~~-~g~~vllvD~Dp~-~~l~~~l~~~~~~l~~~~~~~~~~~~~~~~~v~~~ 401 (589)
T 1ihu_A 324 RNEHGLIMLMGKGGVGKTTMAAAIAVRLAD-MGFDVHLTTSDPA-AHLSMTLNGSLNNLQVSRIDPHEETERYRQHVLET 401 (589)
T ss_dssp TTSCEEEEEECSTTSSHHHHHHHHHHHHHH-TTCCEEEEESCCC------------CCEEEEECCHHHHHHHHHHHHHHH
T ss_pred ccCCeEEEEecCCCCChhhHHHHHHHHHHH-CCCcEEEEeCCCc-ccHhHHhcccCCCceeeecchHHHHHHHHHHHHHh
Confidence 347889999999999999999999999999 9999999999998 5777777653211 111111000000000001110
Q ss_pred c-ccCCCC-C---cccccc--hhhHHHHHHHHHhcccCCCCEEEEcCCCCCC--------------------cc---hhh
Q 028600 108 G-FLVPSS-S---PVVWRG--PMVMSALRKMSREVDWGNLDILVIDMPPGTG--------------------DA---QLT 157 (207)
Q Consensus 108 ~-~~~~~~-~---~~~~~~--~~~~~~l~~~~~~l~~~~~D~IiiD~~~~~~--------------------~~---~~~ 157 (207)
. ...... . ...+.. ......+..+.+.+++.+||+||||+||+.. +. ...
T Consensus 402 ~~~~l~~~~~~~~~~~~~~p~~~e~~~~~~l~~~~~~~~~D~vviD~~p~~~tl~ll~~p~~~~~~~~~~~~~~~~~~~~ 481 (589)
T 1ihu_A 402 KGKELDEAGKRLLEEDLRSPCTEEIAVFQAFSRVIREAGKRFVVMDTAPTGHTLLLLDATGAYHREIAKKMGEKGHFTTP 481 (589)
T ss_dssp HHTTCCHHHHHHHHHHTTSHHHHHHHHHHHHTTTGGGGGTSEEEESCCCCHHHHHHHHHC------------------CC
T ss_pred hhccCChhhHHHHHHHhcCCChHHHHHHHHHHHHHhccCCCEEEEcCCCCccHHHHHHhHHHHHHHHHHhcccchHHHHH
Confidence 0 000000 0 000000 1112234444444432579999999999731 10 000
Q ss_pred hhhhh--cCceEEEeeCCchhhHHHHHHHHHHhhhCCCCeeEEEEccccC
Q 028600 158 TTQTL--QLSGALIVSTPQDVALIDARKGITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 158 ~~~~~--~~d~vi~v~~~~~~~~~~~~~~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
...+. .+|.+++|+.++..++.++.++++.+++.++++.|+|+|++..
T Consensus 482 ~~~l~d~~~~~vvlV~~p~~~~~~~a~~~~~~l~~~g~~~~gvVvN~~~~ 531 (589)
T 1ihu_A 482 MMLLQDPERTKVLLVTLPETTPVLEAANLQADLERAGIHPWGWIINNSLS 531 (589)
T ss_dssp HHHHHCTTTEEEEEEECSSHHHHHHHHHHHHHHHHTTCCCCEEEEEEEST
T ss_pred HHHhcCCCCCEEEEEeCCCccHHHHHHHHHHHHHHCCCCCCEEEEeCCcC
Confidence 11121 4689999999999999999999999999999999999999864
No 34
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=99.76 E-value=4.8e-18 Score=140.36 Aligned_cols=149 Identities=19% Similarity=0.249 Sum_probs=98.7
Q ss_pred CCCeEEEEEeCCCCCcHHHHHHHHHHHHHHhC-CCeEEEEecCCCCCCccccccccCCccccccccceecccccceeecc
Q 028600 29 GVKDVIAVASGKGGVGKSTTAVNLAVALASKC-QLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSM 107 (207)
Q Consensus 29 ~~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~-g~~VlliD~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (207)
+.+++|+|+ ++||+||||++.+||.++++ . |++|+++|+|++.+...+.+.. .....++++++.
T Consensus 98 ~~~~vI~iv-G~~GvGKTT~a~~LA~~l~~-~~G~kVllvd~D~~r~~a~~ql~~-------------~~~~~~l~v~~~ 162 (433)
T 2xxa_A 98 QPPAVVLMA-GLQGAGKTTSVGKLGKFLRE-KHKKKVLVVSADVYRPAAIKQLET-------------LAEQVGVDFFPS 162 (433)
T ss_dssp SSSEEEEEE-CSTTSSHHHHHHHHHHHHHH-TSCCCEEEEECCCSSTTHHHHHHH-------------HHHHHTCEECCC
T ss_pred CCCeEEEEE-CCCCCCHHHHHHHHHHHHHH-hcCCeEEEEecCCCCccHHHHHHh-------------hcccCCeeEEeC
Confidence 347899997 58999999999999999999 8 9999999999988765433210 112235555554
Q ss_pred cccCCCCCcccccchhhHHHHHHHHHhcccCCCCEEEEcCCCCCCcchhhhhh------hhcCceEEEeeCCchhhHHHH
Q 028600 108 GFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQ------TLQLSGALIVSTPQDVALIDA 181 (207)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~D~IiiD~~~~~~~~~~~~~~------~~~~d~vi~v~~~~~~~~~~~ 181 (207)
+.. . .....+.+.++.+++.+||+|||||||.++........ +...|.+++|+++.. + ..+
T Consensus 163 ~~~---~--------dp~~i~~~~l~~~~~~~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~-g-~~~ 229 (433)
T 2xxa_A 163 DVG---Q--------KPVDIVNAALKEAKLKFYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMT-G-QDA 229 (433)
T ss_dssp CSS---S--------CHHHHHHHHHHHHHHTTCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTB-C-TTH
T ss_pred CCC---C--------CHHHHHHHHHHHHHhCCCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecch-h-HHH
Confidence 421 0 11233356666664268999999999866532221221 235789999888763 3 333
Q ss_pred HHHHHHhhhCCCCeeEEEEccccCC
Q 028600 182 RKGITMFSKVQVPVCSFLAQIISSM 206 (207)
Q Consensus 182 ~~~l~~l~~~~~~~~g~v~N~~~~~ 206 (207)
...++.+.. ..++.|+|+|+++..
T Consensus 230 ~~~~~~f~~-~l~i~gvVlnK~D~~ 253 (433)
T 2xxa_A 230 ANTAKAFNE-ALPLTGVVLTKVDGD 253 (433)
T ss_dssp HHHHHHHHH-HSCCCCEEEECTTSS
T ss_pred HHHHHHHhc-cCCCeEEEEecCCCC
Confidence 344444442 456779999999853
No 35
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=99.70 E-value=1e-16 Score=126.54 Aligned_cols=146 Identities=20% Similarity=0.233 Sum_probs=97.5
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccccCCccccccccceecccccceeeccccc
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGFL 110 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (207)
+++|+++ +++|+||||++.+||..++. .|++|+++|+|++.+...+.+..- ....++.+++.+.
T Consensus 98 ~~vi~i~-G~~G~GKTT~~~~la~~~~~-~g~~v~l~~~D~~r~~a~~ql~~~-------------~~~~~v~v~~~~~- 161 (297)
T 1j8m_F 98 PYVIMLV-GVQGTGKTTTAGKLAYFYKK-KGFKVGLVGADVYRPAALEQLQQL-------------GQQIGVPVYGEPG- 161 (297)
T ss_dssp SEEEEEE-CSSCSSTTHHHHHHHHHHHH-TTCCEEEEECCCSSSHHHHHHHHH-------------HHHHTCCEECCTT-
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHHHH-CCCeEEEEecCCCCHHHHHHHHHH-------------hccCCeEEEecCC-
Confidence 7888886 68999999999999999999 999999999999887654433210 0112344443211
Q ss_pred CCCCCcccccchhhHHHHHHHHHhcccCCCCEEEEcCCCCCC--cchhhh------hhhhcCceEEEeeCCchhhHHHHH
Q 028600 111 VPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTG--DAQLTT------TQTLQLSGALIVSTPQDVALIDAR 182 (207)
Q Consensus 111 ~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~D~IiiD~~~~~~--~~~~~~------~~~~~~d~vi~v~~~~~~~~~~~~ 182 (207)
. ......+.+.++.+++.+||+|||||||... .....+ .....+|.+++|+++.. . ....
T Consensus 162 --~--------~~p~~~~~~~l~~~~~~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~-g-~~~~ 229 (297)
T 1j8m_F 162 --E--------KDVVGIAKRGVEKFLSEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASI-G-QKAY 229 (297)
T ss_dssp --C--------CCHHHHHHHHHHHHHHTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGG-G-GGHH
T ss_pred --C--------CCHHHHHHHHHHHHHhCCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCc-h-HHHH
Confidence 0 0112334566666643789999999998765 322111 12347899999998864 3 3334
Q ss_pred HHHHHhhhCCCCeeEEEEccccC
Q 028600 183 KGITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 183 ~~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
+.++.+.+ ..++.|+|+|+++.
T Consensus 230 ~~~~~~~~-~~~i~gvVlnk~D~ 251 (297)
T 1j8m_F 230 DLASKFNQ-ASKIGTIIITKMDG 251 (297)
T ss_dssp HHHHHHHH-TCTTEEEEEECGGG
T ss_pred HHHHHHHh-hCCCCEEEEeCCCC
Confidence 44455544 47778999999985
No 36
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=99.70 E-value=1.5e-16 Score=126.75 Aligned_cols=151 Identities=18% Similarity=0.194 Sum_probs=93.5
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccccCCccccccccceecccccceeecccc
Q 028600 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGF 109 (207)
Q Consensus 30 ~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (207)
.+++|+|+|. +|+||||++.+||..++. .|++|+++|+|++.+.....+.. +.. .....++.++|.+.
T Consensus 104 ~~~vI~ivG~-~G~GKTT~~~~LA~~l~~-~g~kVllid~D~~r~~a~~ql~~-----~~~-----~~~~~~l~vip~~~ 171 (320)
T 1zu4_A 104 RLNIFMLVGV-NGTGKTTSLAKMANYYAE-LGYKVLIAAADTFRAGATQQLEE-----WIK-----TRLNNKVDLVKANK 171 (320)
T ss_dssp SCEEEEEESS-TTSSHHHHHHHHHHHHHH-TTCCEEEEECCCSCHHHHHHHHH-----HHT-----TTSCTTEEEECCSS
T ss_pred CCeEEEEECC-CCCCHHHHHHHHHHHHHH-CCCeEEEEeCCCcchhHHHHHHH-----HHh-----ccccCCceEEeCCC
Confidence 4889999986 999999999999999999 99999999999876542111100 000 00123455554332
Q ss_pred cCCCCCcccccchhhHHHHHHHHHhcccCCCCEEEEcCCCCCCcchhhhhhh------------hcCceEEEeeCCchhh
Q 028600 110 LVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQT------------LQLSGALIVSTPQDVA 177 (207)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~D~IiiD~~~~~~~~~~~~~~~------------~~~d~vi~v~~~~~~~ 177 (207)
. . ..+ .....+.+...++ +.||+|||||||.+......+..+ ..+|.+++|+++.. .
T Consensus 172 ~-~-~~p-------~~~~~~~l~~~~~-~~yD~VIIDTpg~l~~~~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~-~ 240 (320)
T 1zu4_A 172 L-N-ADP-------ASVVFDAIKKAKE-QNYDLLLIDTAGRLQNKTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATT-G 240 (320)
T ss_dssp T-T-CCH-------HHHHHHHHHHHHH-TTCSEEEEECCCCGGGHHHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGG-T
T ss_pred C-C-CCH-------HHHHHHHHHHHHh-cCCCEEEEcCCCcccccHHHHHHHHHHHHHHhcccCCCCceEEEEEECCC-c
Confidence 1 0 010 0112333444445 899999999999765322111111 13789999998873 4
Q ss_pred HHHHHHHHHHhhhCCCCeeEEEEccccC
Q 028600 178 LIDARKGITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 178 ~~~~~~~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
.+.+.++ +.+.+ ..++.|+|+|+++.
T Consensus 241 ~~~l~~~-~~~~~-~~~i~GvVltk~d~ 266 (320)
T 1zu4_A 241 QNGVIQA-EEFSK-VADVSGIILTKMDS 266 (320)
T ss_dssp HHHHHHH-HHHTT-TSCCCEEEEECGGG
T ss_pred HHHHHHH-HHHhh-cCCCcEEEEeCCCC
Confidence 4444333 33332 35678999999985
No 37
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=99.66 E-value=7.6e-16 Score=121.50 Aligned_cols=147 Identities=20% Similarity=0.225 Sum_probs=95.6
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccccCCccccccccceecccccceeecccc
Q 028600 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGF 109 (207)
Q Consensus 30 ~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (207)
.+++|+++ +++|+||||++.+||..++. .|.+|+++|+|++.+...+.++. + ....++..++.+.
T Consensus 97 ~~~~i~i~-g~~G~GKTT~~~~la~~~~~-~~~~v~l~~~d~~~~~~~~ql~~-----------~--~~~~~l~~~~~~~ 161 (295)
T 1ls1_A 97 DRNLWFLV-GLQGSGKTTTAAKLALYYKG-KGRRPLLVAADTQRPAAREQLRL-----------L--GEKVGVPVLEVMD 161 (295)
T ss_dssp SSEEEEEE-CCTTTTHHHHHHHHHHHHHH-TTCCEEEEECCSSCHHHHHHHHH-----------H--HHHHTCCEEECCT
T ss_pred CCeEEEEE-CCCCCCHHHHHHHHHHHHHH-cCCeEEEecCCcccHhHHHHHHH-----------h--cccCCeEEEEcCC
Confidence 48899998 78999999999999999999 89999999999987654332221 0 1123455554432
Q ss_pred cCCCCCcccccchhhHHHHHHHHHhcccCCCCEEEEcCCCCCCcchhhhhhh------hcCceEEEeeCCchhhHHHHHH
Q 028600 110 LVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQT------LQLSGALIVSTPQDVALIDARK 183 (207)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~D~IiiD~~~~~~~~~~~~~~~------~~~d~vi~v~~~~~~~~~~~~~ 183 (207)
. ..+ .+..+..++.+...+||+||||+||..+.....+..+ ...|.+++|+++.. . .++.+
T Consensus 162 ~---~~p--------~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~~~-~-~~~~~ 228 (295)
T 1ls1_A 162 G---ESP--------ESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMT-G-QEALS 228 (295)
T ss_dssp T---CCH--------HHHHHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGG-T-HHHHH
T ss_pred C---CCH--------HHHHHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEeCCC-c-HHHHH
Confidence 1 111 1123455555521689999999998765322222221 24788898888763 3 33333
Q ss_pred HHHHhhhCCCCeeEEEEccccC
Q 028600 184 GITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 184 ~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
.++.+.+ ..++.|+|+|+++.
T Consensus 229 ~~~~~~~-~~~i~givlnk~d~ 249 (295)
T 1ls1_A 229 VARAFDE-KVGVTGLVLTKLDG 249 (295)
T ss_dssp HHHHHHH-HTCCCEEEEECGGG
T ss_pred HHHHHhh-cCCCCEEEEECCCC
Confidence 3444443 35678999999985
No 38
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=99.64 E-value=7e-16 Score=117.35 Aligned_cols=165 Identities=12% Similarity=0.095 Sum_probs=104.3
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccccCCccccccccce-------ecccccc
Q 028600 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMV-------PIENYGV 102 (207)
Q Consensus 30 ~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~~~~~~~~~~~~~-------~~~~~~~ 102 (207)
.+|.|.|+++.+|+|||+++++|+++|++ +|++|..+- +........ ..++.+.+... +....+.
T Consensus 3 ~mk~i~Itgt~t~vGKT~vt~~L~~~l~~-~G~~V~~~K--Pv~~g~~~~-----~~~~~~~D~~~~~~~~~~~~~~~~~ 74 (228)
T 3of5_A 3 AMKKFFIIGTDTEVGKTYISTKLIEVCEH-QNIKSLCLK--PVASGQSQF-----SELCEDVESILNAYKHKFTAAEINL 74 (228)
T ss_dssp TCEEEEEEESSSSSCHHHHHHHHHHHHHH-TTCCEEEEC--SEEESBCSS-----SSSBHHHHHHHHHTTTSSCHHHHCS
T ss_pred CCcEEEEEeCCCCCCHHHHHHHHHHHHHH-CCCeeEEec--ceeecCccC-----CCCCChHHHHHHhcCCCCChhhEEE
Confidence 47999999999999999999999999999 999999974 211110000 00110000000 0000111
Q ss_pred eeecccccCCCCCc-ccccchhhHHHHHHHHHh-cccCCCCEEEEcCCCCCCcc----hhhhhh-hhcCceEEEeeCCch
Q 028600 103 KCMSMGFLVPSSSP-VVWRGPMVMSALRKMSRE-VDWGNLDILVIDMPPGTGDA----QLTTTQ-TLQLSGALIVSTPQD 175 (207)
Q Consensus 103 ~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~-l~~~~~D~IiiD~~~~~~~~----~~~~~~-~~~~d~vi~v~~~~~ 175 (207)
..+.... ++... .........+.+.+.++. +. ++||+||||+++++.+. ...... ......+|+|+++..
T Consensus 75 ~~~~~p~--sp~~aa~~~~~~i~~~~i~~~~~~~l~-~~~D~vlIEgaggl~~p~~~~~~~adla~~l~~pviLV~~~~~ 151 (228)
T 3of5_A 75 ISFNQAV--APHIIAAKTKVDISIENLKQFIEDKYN-QDLDILFIEGAGGLLTPYSDHTTQLDLIKALQIPVLLVSAIKV 151 (228)
T ss_dssp EEESSSS--CHHHHHHHTTCCCCHHHHHHHHHGGGG-SSCSEEEEEEEEETTCBSSSSCBHHHHHHHHTCCEEEEEECST
T ss_pred EEECCCC--CHHHHHHHcCCCCCHHHHHHHHHHHHH-ccCCEEEEECCCccccccccchhHHHHHHHcCCCEEEEEcCCc
Confidence 1111100 00000 000111245778888888 88 99999999999765321 111111 112456999999999
Q ss_pred hhHHHHHHHHHHhhhCCCCeeEEEEccccC
Q 028600 176 VALIDARKGITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 176 ~~~~~~~~~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
.++.++...++.+++.+.++.|+|+|+++.
T Consensus 152 ~~i~~~~~~~~~l~~~~~~i~GvIlN~~~~ 181 (228)
T 3of5_A 152 GCINHTLLTINELNRHNIKLAGWIANCNDS 181 (228)
T ss_dssp THHHHHHHHHHHHHHTTCCEEEEEEEECCT
T ss_pred chHHHHHHHHHHHHhCCCcEEEEEEECcCC
Confidence 999999999999999999999999999874
No 39
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=99.64 E-value=4e-15 Score=113.89 Aligned_cols=172 Identities=12% Similarity=0.071 Sum_probs=106.1
Q ss_pred ccCCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccccCCcccc-c-cccce-ecccccc
Q 028600 26 KIDGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVT-K-DMKMV-PIENYGV 102 (207)
Q Consensus 26 ~~~~~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~~~~~~~-~-~~~~~-~~~~~~~ 102 (207)
...+++|.|.|+++.+|+|||++++.|+++|++ +|.+|..+. +........-+.+.+..+. . ..... ......+
T Consensus 16 ~~~~m~k~i~ItgT~t~vGKT~vs~gL~~~L~~-~G~~V~~fK--Pv~~g~~~~~~~~~D~~~~~~~~~~~~~g~~~~~~ 92 (242)
T 3qxc_A 16 NLYFQGHMLFISATNTNAGKTTCARLLAQYCNA-CGVKTILLK--PIETGVNDAINHSSDAHLFLQDNRLLDRSLTLKDI 92 (242)
T ss_dssp ---CCCEEEEEEESSTTSSHHHHHHHHHHHHHH-TTCCEEEEC--CEECSCCTTTCCCSHHHHHHHHHHTTCTTCCHHHH
T ss_pred HHhhcCcEEEEEeCCCCCcHHHHHHHHHHHHHh-CCCceEEEe--eeecCCcccCCCCchHHHHHHHHHHHhCCCChHHe
Confidence 355678999999999999999999999999999 999999985 2111110000000000000 0 00000 0000000
Q ss_pred eeecccccCCCCCccc-----ccc--hhhHHHHHHHHHhcccCCCCEEEEcCCCCCCcc----hhhhhh-hhcCceEEEe
Q 028600 103 KCMSMGFLVPSSSPVV-----WRG--PMVMSALRKMSREVDWGNLDILVIDMPPGTGDA----QLTTTQ-TLQLSGALIV 170 (207)
Q Consensus 103 ~~~~~~~~~~~~~~~~-----~~~--~~~~~~l~~~~~~l~~~~~D~IiiD~~~~~~~~----~~~~~~-~~~~d~vi~v 170 (207)
.+.....+.... ... ....+.+.+.++.+. ..||+||||+++++... ...... ......||+|
T Consensus 93 ----~p~~~~~p~sp~~aa~~~g~~~~i~~~~I~~~~~~l~-~~~D~vlIEGagGl~~pl~~~~~~adlA~~l~~pVILV 167 (242)
T 3qxc_A 93 ----SFYRYHKVSAPLIAQQEEDPNAPIDTDNLTQRLHNFT-KTYDLVIVEGAGGLCVPITLEENMLDFALKLKAKMLLI 167 (242)
T ss_dssp ----CCEECSSSSCHHHHHHHHCTTCCCCHHHHHHHHHHGG-GTCSEEEEECCSCTTCBSSSSCBHHHHHHHHTCEEEEE
T ss_pred ----eeEEECCCCChHHHHHHcCCCCcCCHHHHHHHHHHHH-hcCCEEEEECCCCccccccccchHHHHHHHcCCCEEEE
Confidence 011111111000 000 234677888999898 99999999999876431 111111 1134579999
Q ss_pred eCCchhhHHHHHHHHHHhhhCCCCeeEEEEccccCC
Q 028600 171 STPQDVALIDARKGITMFSKVQVPVCSFLAQIISSM 206 (207)
Q Consensus 171 ~~~~~~~~~~~~~~l~~l~~~~~~~~g~v~N~~~~~ 206 (207)
++++..++.++...++.+++.+.+ .|+|+|+++..
T Consensus 168 ~~~~lg~i~~~~lt~~~l~~~g~~-~GvIlN~v~~~ 202 (242)
T 3qxc_A 168 SHDNLGLINDCLLNDFLLKSHQLD-YKIAINLKGNN 202 (242)
T ss_dssp ECCSTTHHHHHHHHHHHHHTSSSC-EEEEECCCTTC
T ss_pred EcCCCcHHHHHHHHHHHHHhCCCC-EEEEEeCCCCc
Confidence 999999999999999999999999 99999999753
No 40
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=99.63 E-value=1.6e-15 Score=124.63 Aligned_cols=147 Identities=19% Similarity=0.194 Sum_probs=97.1
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccccCCccccccccceecccccceeecccc
Q 028600 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGF 109 (207)
Q Consensus 30 ~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (207)
.+++|+++ +++|+||||++.+||..++. .|++|+++|+|++.+...+.+..- ....++++++.+.
T Consensus 97 ~~~vi~i~-G~~GsGKTT~~~~LA~~l~~-~g~~Vllvd~D~~r~aa~~qL~~~-------------~~~~gv~v~~~~~ 161 (425)
T 2ffh_A 97 DRNLWFLV-GLQGSGKTTTAAKLALYYKG-KGRRPLLVAADTQRPAAREQLRLL-------------GEKVGVPVLEVMD 161 (425)
T ss_dssp SSEEEEEE-CCTTSSHHHHHHHHHHHHHT-TTCCEEEEECCSSCHHHHHHHHHH-------------HHHHTCCEEECCT
T ss_pred CCeEEEEE-CCCCCCHHHHHHHHHHHHHH-cCCeEEEeeccccCchhHHHHHHh-------------cccCCccEEecCC
Confidence 47899997 67999999999999999999 899999999999887654433210 1123455555442
Q ss_pred cCCCCCcccccchhhHHHHHHHHHhcccCCCCEEEEcCCCCCCcchhhh------hhhhcCceEEEeeCCchhhHHHHHH
Q 028600 110 LVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTT------TQTLQLSGALIVSTPQDVALIDARK 183 (207)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~D~IiiD~~~~~~~~~~~~------~~~~~~d~vi~v~~~~~~~~~~~~~ 183 (207)
. .. ....+.+.++.++...||+|||||||.+......+ ......|.+++|+++.. . .++..
T Consensus 162 ~---~~--------p~~i~~~~l~~~~~~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~t-g-q~av~ 228 (425)
T 2ffh_A 162 G---ES--------PESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMT-G-QEALS 228 (425)
T ss_dssp T---CC--------HHHHHHHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGG-T-THHHH
T ss_pred C---CC--------HHHHHHHHHHHHHHCCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccc-h-HHHHH
Confidence 1 11 11223556666522789999999998765321111 11225889999998763 3 33334
Q ss_pred HHHHhhhCCCCeeEEEEccccC
Q 028600 184 GITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 184 ~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
.++.+.+ ..++.|+|+|+++.
T Consensus 229 ~a~~f~~-~l~i~GVIlTKlD~ 249 (425)
T 2ffh_A 229 VARAFDE-KVGVTGLVLTKLDG 249 (425)
T ss_dssp HHHHHHH-HTCCCEEEEESGGG
T ss_pred HHHHHHh-cCCceEEEEeCcCC
Confidence 4444443 35677999999975
No 41
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=99.62 E-value=1.8e-14 Score=110.86 Aligned_cols=161 Identities=14% Similarity=0.083 Sum_probs=104.7
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccccCCccccccccceecccccceeecccc
Q 028600 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGF 109 (207)
Q Consensus 30 ~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (207)
.++.|.|+++.+|+|||++++.|+++|++ +|.+|..+.-=..+.. .+. .+...... ..++.......
T Consensus 25 ~m~~i~Itgt~t~vGKT~vt~gL~~~l~~-~G~~V~~fKPv~~g~~------~~~----~D~~~~~~--~~g~~~~~~~~ 91 (251)
T 3fgn_A 25 HMTILVVTGTGTGVGKTVVCAALASAARQ-AGIDVAVCKPVQTGTA------RGD----DDLAEVGR--LAGVTQLAGLA 91 (251)
T ss_dssp SCEEEEEEESSTTSCHHHHHHHHHHHHHH-TTCCEEEEEEEECCGG------GTC----CHHHHHHH--HHCCCEEEEEE
T ss_pred CCCEEEEEeCCCCCcHHHHHHHHHHHHHH-CCCeEEEEeeeecCCC------CCC----HHHHHHHH--HcCCCCCCCCe
Confidence 47999999999999999999999999999 9999999852111100 000 00000000 00000000001
Q ss_pred cCCCCCcc------cccchhhHHHHHHHHHhcccCCCCEEEEcCCCCCCcc-----hhhhhh-hhcCceEEEeeCCchhh
Q 028600 110 LVPSSSPV------VWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDA-----QLTTTQ-TLQLSGALIVSTPQDVA 177 (207)
Q Consensus 110 ~~~~~~~~------~~~~~~~~~~l~~~~~~l~~~~~D~IiiD~~~~~~~~-----~~~~~~-~~~~d~vi~v~~~~~~~ 177 (207)
....+... ........+.+.+.++.++ ++||+||||+++++.+. ...... ......||+|++++..+
T Consensus 92 ~~~~p~sP~~aa~~~~~~~~~~~~i~~~~~~l~-~~~D~vlIEGagGl~~pl~~~~~~~adla~~l~~pVILV~~~~~g~ 170 (251)
T 3fgn_A 92 RYPQPMAPAAAAEHAGMALPARDQIVRLIADLD-RPGRLTLVEGAGGLLVELAEPGVTLRDVAVDVAAAALVVVTADLGT 170 (251)
T ss_dssp ECSSSSCHHHHHHHTTCCCCCHHHHHHHHHTTC-CTTCEEEEECSSSTTCEEETTTEEHHHHHHHTTCEEEEEECSSTTH
T ss_pred eECCCCChHHHHHHcCCCCCCHHHHHHHHHHHH-hcCCEEEEECCCCCcCCcCcccchHHHHHHHcCCCEEEEEcCCCcc
Confidence 11111100 0000234577889999998 99999999999876321 111111 12356899999999999
Q ss_pred HHHHHHHHHHhhhCCCCeeEEEEcccc
Q 028600 178 LIDARKGITMFSKVQVPVCSFLAQIIS 204 (207)
Q Consensus 178 ~~~~~~~l~~l~~~~~~~~g~v~N~~~ 204 (207)
+.++...++.+++.+.++.|+|+|++.
T Consensus 171 i~~~~lt~~~l~~~g~~i~GvIlN~v~ 197 (251)
T 3fgn_A 171 LNHTKLTLEALAAQQVSCAGLVIGSWP 197 (251)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEEEEEEC
T ss_pred HHHHHHHHHHHHhCCCCEEEEEEECCC
Confidence 999999999999999999999999985
No 42
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.61 E-value=2.7e-15 Score=116.18 Aligned_cols=159 Identities=14% Similarity=0.064 Sum_probs=88.6
Q ss_pred CCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccccCCccccccccceec----ccccce
Q 028600 28 DGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPI----ENYGVK 103 (207)
Q Consensus 28 ~~~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~ 103 (207)
..+...+++.++|||+||||++.+||.+++ .|++|++||+|++...+.... ...+.+....... ...+..
T Consensus 10 ~~~~~~i~~~~GkgGvGKTTl~~~La~~l~--~g~~v~vvd~D~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 83 (262)
T 1yrb_A 10 HGMASMIVVFVGTAGSGKTTLTGEFGRYLE--DNYKVAYVNLDTGVKELPYEP----SIDVREFVTVEEIMREGYGPNGA 83 (262)
T ss_dssp TTCCCEEEEEECSTTSSHHHHHHHHHHHHT--TTSCEEEEECCSSCSCCSSCC----SEEGGGTCCHHHHHTTTCCHHHH
T ss_pred CCcceEEEEEeCCCCCCHHHHHHHHHHHHH--CCCeEEEEeCCCCccccCCCC----CCChhhcccHHHHhhccCCCCCc
Confidence 344678888899999999999999999998 699999999999886643111 1111111000000 000111
Q ss_pred eecccccCCCCCcccccchhhHHHHHHHHHhcccCCCCEEEEcCCCCCCcchhh------hhhhhcCceEEEeeCCc---
Q 028600 104 CMSMGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLT------TTQTLQLSGALIVSTPQ--- 174 (207)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~D~IiiD~~~~~~~~~~~------~~~~~~~d~vi~v~~~~--- 174 (207)
++++. .. .......+.+.++.++ ..||++|+|||+..+..... ...+.. +.++.++++.
T Consensus 84 ~~~~~-------~~---~~~~~~~l~~~l~~~~-~~~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~ 151 (262)
T 1yrb_A 84 IVESY-------DR---LMEKFNEYLNKILRLE-KENDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILK 151 (262)
T ss_dssp HHHHH-------HH---HHTTHHHHHHHHHHHH-HHCSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCC
T ss_pred EEecH-------HH---HhhhHHHHHHHHHHHh-hcCCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhc
Confidence 11110 00 0022456677777777 78999999999865422110 012223 4555555442
Q ss_pred -hhhHHHHHHH-HHHhhhCCCCeeEEEEccccC
Q 028600 175 -DVALIDARKG-ITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 175 -~~~~~~~~~~-l~~l~~~~~~~~g~v~N~~~~ 205 (207)
.......... .....+.+.+. .+|+||+|.
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~p~-~iv~NK~D~ 183 (262)
T 1yrb_A 152 KPNDYCFVRFFALLIDLRLGATT-IPALNKVDL 183 (262)
T ss_dssp SHHHHHHHHHHHHHHHHHHTSCE-EEEECCGGG
T ss_pred CHHHHHHHHHHHHHHhcccCCCe-EEEEecccc
Confidence 2222222211 12233446676 499999984
No 43
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=99.59 E-value=9.7e-15 Score=120.30 Aligned_cols=148 Identities=14% Similarity=0.219 Sum_probs=92.3
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccccCCccccccccceecccccceeecccc
Q 028600 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGF 109 (207)
Q Consensus 30 ~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (207)
.+++|++++. +|+||||++.+||.++++ .|++|+++++|++.+.....+..- ....++.+...+.
T Consensus 99 ~p~vIlivG~-~G~GKTTt~~kLA~~l~~-~G~kVllv~~D~~R~aa~eqL~~~-------------~~~~gvpv~~~~~ 163 (443)
T 3dm5_A 99 KPTILLMVGI-QGSGKTTTVAKLARYFQK-RGYKVGVVCSDTWRPGAYHQLRQL-------------LDRYHIEVFGNPQ 163 (443)
T ss_dssp SSEEEEEECC-TTSSHHHHHHHHHHHHHT-TTCCEEEEECCCSSTHHHHHHHHH-------------HGGGTCEEECCTT
T ss_pred CCeEEEEECc-CCCCHHHHHHHHHHHHHH-CCCeEEEEeCCCcchhHHHHHHHH-------------HHhcCCcEEecCC
Confidence 3788888765 999999999999999999 999999999999886532222110 0011222221110
Q ss_pred cCCCCCcccccchhhHHHHHHHHHhcccCCCCEEEEcCCCCCCcchh------hhhhhhcCceEEEeeCCchhhHHHHHH
Q 028600 110 LVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQL------TTTQTLQLSGALIVSTPQDVALIDARK 183 (207)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~D~IiiD~~~~~~~~~~------~~~~~~~~d~vi~v~~~~~~~~~~~~~ 183 (207)
. ......+.+.++.++.++||+|||||++....... .+......|.+++|+++.. + .....
T Consensus 164 ---~--------~dp~~i~~~al~~a~~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~-g-q~a~~ 230 (443)
T 3dm5_A 164 ---E--------KDAIKLAKEGVDYFKSKGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTI-G-QQAYN 230 (443)
T ss_dssp ---C--------CCHHHHHHHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGG-G-GGHHH
T ss_pred ---C--------CCHHHHHHHHHHHHHhCCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCC-c-hhHHH
Confidence 0 11233445556665535799999999975442221 1112225789999998865 2 22233
Q ss_pred HHHHhhhCCCCeeEEEEccccCC
Q 028600 184 GITMFSKVQVPVCSFLAQIISSM 206 (207)
Q Consensus 184 ~l~~l~~~~~~~~g~v~N~~~~~ 206 (207)
..+.+.+ ..++.|+|+|++|..
T Consensus 231 ~a~~f~~-~~~i~gVIlTKlD~~ 252 (443)
T 3dm5_A 231 QALAFKE-ATPIGSIIVTKLDGS 252 (443)
T ss_dssp HHHHHHH-SCTTEEEEEECCSSC
T ss_pred HHHHHHh-hCCCeEEEEECCCCc
Confidence 3344443 346679999999853
No 44
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=99.58 E-value=2.7e-14 Score=117.98 Aligned_cols=145 Identities=21% Similarity=0.239 Sum_probs=92.1
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccccCCccccccccceecccccceeeccccc
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGFL 110 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (207)
+++|+|+| .+|+||||++.+||..+++ .|++|+++|+|++.+.....+... ....++.+.+.+..
T Consensus 99 ~~vI~ivG-~~GvGKTTla~~La~~l~~-~G~kVllv~~D~~r~~a~~qL~~~-------------~~~~gv~v~~~~~~ 163 (432)
T 2v3c_C 99 QNVILLVG-IQGSGKTTTAAKLARYIQK-RGLKPALIAADTYRPAAYEQLKQL-------------AEKIHVPIYGDETR 163 (432)
T ss_dssp CCCEEEEC-CSSSSTTHHHHHHHHHHHH-HHCCEEEECCSCCCTTGGGSSHHH-------------HHHSSCCEECCSSS
T ss_pred CeEEEEEC-CCCCCHHHHHHHHHHHHHH-cCCeEEEEeccccCchHHHHHHHh-------------hhccCcceEecCCC
Confidence 57899977 5999999999999999999 899999999999987754433210 01223444443310
Q ss_pred CCCCCcccccchhhHHHHHHHHHhcccCCCCEEEEcCCCCCCcchhhhh------hhhcCceEEEeeCCchhhHHHHHHH
Q 028600 111 VPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTT------QTLQLSGALIVSTPQDVALIDARKG 184 (207)
Q Consensus 111 ~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~D~IiiD~~~~~~~~~~~~~------~~~~~d~vi~v~~~~~~~~~~~~~~ 184 (207)
...+ ...+.+.+..+ ..||+||||||+.......... .+..+|.+++|+++.... +....
T Consensus 164 --~~dp--------~~i~~~~l~~~--~~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~--~~~~~ 229 (432)
T 2v3c_C 164 --TKSP--------VDIVKEGMEKF--KKADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQ--QAGIQ 229 (432)
T ss_dssp --CCSS--------STTHHHHHHTT--SSCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGG--GHHHH
T ss_pred --CCCH--------HHHHHHHHHHh--hCCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccH--HHHHH
Confidence 0011 01124455555 6899999999986653211111 112578999998775432 23333
Q ss_pred HHHhhhCCC-CeeEEEEccccC
Q 028600 185 ITMFSKVQV-PVCSFLAQIISS 205 (207)
Q Consensus 185 l~~l~~~~~-~~~g~v~N~~~~ 205 (207)
.+.+.. .. ++.++|+|++|.
T Consensus 230 ~~~~~~-~~~~i~gvVlnK~D~ 250 (432)
T 2v3c_C 230 AKAFKE-AVGEIGSIIVTKLDG 250 (432)
T ss_dssp HHHHHT-TSCSCEEEEEECSSS
T ss_pred HHHHhh-cccCCeEEEEeCCCC
Confidence 444433 35 668999999985
No 45
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=99.54 E-value=2.3e-14 Score=120.20 Aligned_cols=148 Identities=18% Similarity=0.173 Sum_probs=89.9
Q ss_pred CCCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccccCCccccccccceecccccceeeccc
Q 028600 29 GVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMG 108 (207)
Q Consensus 29 ~~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (207)
+.+++|+|+ +.+|+||||++.+||.++++ .|++|++||+|++.+.....+.... ...++.+.+.+
T Consensus 99 ~~~~vI~iv-G~~GvGKTTl~~kLA~~l~~-~G~kVllVd~D~~r~aa~~qL~~~~-------------~~~~i~v~~~~ 163 (504)
T 2j37_W 99 GKQNVIMFV-GLQGSGKTTTCSKLAYYYQR-KGWKTCLICADTFRAGAFDQLKQNA-------------TKARIPFYGSY 163 (504)
T ss_dssp S--EEEEEE-CSTTSSHHHHHHHHHHHHHH-TTCCEEEEEECCSSSHHHHHHHHHH-------------HHHTCCEEECC
T ss_pred CCCeEEEEE-CCCCCCHHHHHHHHHHHHHh-CCCeEEEEeccccchhHHHHHHHHh-------------hccCceEEccC
Confidence 347789998 45899999999999999999 8999999999998865433322100 01122222221
Q ss_pred ccCCCCCcccccchhhHHHHHHHHHhcccCCCCEEEEcCCCCCCcch-hh-----hhhhhcCceEEEeeCCchhhHHHHH
Q 028600 109 FLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQ-LT-----TTQTLQLSGALIVSTPQDVALIDAR 182 (207)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~D~IiiD~~~~~~~~~-~~-----~~~~~~~d~vi~v~~~~~~~~~~~~ 182 (207)
. .. .....+.+.++.+++.+||+||||||+...... +. ......+|.+++|+++.... + ..
T Consensus 164 ~---~~--------dp~~i~~~al~~~~~~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~-~-~~ 230 (504)
T 2j37_W 164 T---EM--------DPVIIASEGVEKFKNENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQ-A-CE 230 (504)
T ss_dssp C---CS--------CHHHHHHHHHHHHHHTTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCT-T-HH
T ss_pred C---CC--------CHHHHHHHHHHHHHHCCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccc-c-HH
Confidence 1 00 111222344444432789999999998654211 10 11112689999999886531 2 22
Q ss_pred HHHHHhhhCCCCeeEEEEccccC
Q 028600 183 KGITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 183 ~~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
+..+.+.+. .++.++|+|++|.
T Consensus 231 ~~a~~~~~~-~~i~gvVlNK~D~ 252 (504)
T 2j37_W 231 AQAKAFKDK-VDVASVIVTKLDG 252 (504)
T ss_dssp HHHHHHHHH-HCCCCEEEECTTS
T ss_pred HHHHHHHhh-cCceEEEEeCCcc
Confidence 334444432 5666999999985
No 46
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=99.45 E-value=1.1e-12 Score=103.53 Aligned_cols=142 Identities=17% Similarity=0.191 Sum_probs=88.0
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccccCCccccccccceecccccceeecccc
Q 028600 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGF 109 (207)
Q Consensus 30 ~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (207)
.+++|++++. +|+||||++.+||..++...|++|+++|+|++.+.....+.... ...++.....
T Consensus 104 ~g~vi~lvG~-~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~-------------~~~gl~~~~~-- 167 (296)
T 2px0_A 104 HSKYIVLFGS-TGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYA-------------ELLQAPLEVC-- 167 (296)
T ss_dssp CSSEEEEEES-TTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHH-------------TTTTCCCCBC--
T ss_pred CCcEEEEECC-CCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHH-------------HhcCCCeEec--
Confidence 4789999876 89999999999999999547999999999997654322221100 0001111000
Q ss_pred cCCCCCcccccchhhHHHHHHHHHhcccCCCCEEEEcCCCCCCcchhhh---hhhh---cCceEEEeeCCchhhHHHHHH
Q 028600 110 LVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTT---TQTL---QLSGALIVSTPQDVALIDARK 183 (207)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~D~IiiD~~~~~~~~~~~~---~~~~---~~d~vi~v~~~~~~~~~~~~~ 183 (207)
.....+...+..+ .+||+||+||++........+ ..+. ..+.+++|++... ....+.+
T Consensus 168 -------------~~~~~l~~al~~~--~~~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~-~~~~~~~ 231 (296)
T 2px0_A 168 -------------YTKEEFQQAKELF--SEYDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATA-KYEDMKH 231 (296)
T ss_dssp -------------SSHHHHHHHHHHG--GGSSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTB-CHHHHHH
T ss_pred -------------CCHHHHHHHHHHh--cCCCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCC-CHHHHHH
Confidence 0123355566555 689999999997544221111 1111 2567777775443 4456666
Q ss_pred HHHHhhhCCCCeeEEEEccccC
Q 028600 184 GITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 184 ~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
..+.+.. .+..++|+|+++.
T Consensus 232 ~~~~~~~--l~~~giVltk~D~ 251 (296)
T 2px0_A 232 IVKRFSS--VPVNQYIFTKIDE 251 (296)
T ss_dssp HTTTTSS--SCCCEEEEECTTT
T ss_pred HHHHHhc--CCCCEEEEeCCCc
Confidence 6666653 4567999999875
No 47
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=99.44 E-value=1.2e-12 Score=103.63 Aligned_cols=147 Identities=18% Similarity=0.190 Sum_probs=88.0
Q ss_pred CCCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccccCCccccccccceecccccceeeccc
Q 028600 29 GVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMG 108 (207)
Q Consensus 29 ~~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (207)
+.+++|+++|. +|+||||++.+||..++. .|.+|+++|+|.+.+.....+. . + ....++..++.+
T Consensus 102 ~~~~vi~ivG~-~GsGKTTl~~~LA~~l~~-~g~kV~lv~~D~~r~~a~eqL~--------~---~--~~~~gl~~~~~~ 166 (306)
T 1vma_A 102 EPPFVIMVVGV-NGTGKTTSCGKLAKMFVD-EGKSVVLAAADTFRAAAIEQLK--------I---W--GERVGATVISHS 166 (306)
T ss_dssp SSCEEEEEECC-TTSSHHHHHHHHHHHHHH-TTCCEEEEEECTTCHHHHHHHH--------H---H--HHHHTCEEECCS
T ss_pred CCCeEEEEEcC-CCChHHHHHHHHHHHHHh-cCCEEEEEccccccHHHHHHHH--------H---H--HHHcCCcEEecC
Confidence 34789999986 999999999999999999 8999999999987643211100 0 0 001123333221
Q ss_pred ccCCCCCcccccchhhHHH-HHHHHHhcccCCCCEEEEcCCCCCCcchhhhh-------hh-----hcCceEEEeeCCch
Q 028600 109 FLVPSSSPVVWRGPMVMSA-LRKMSREVDWGNLDILVIDMPPGTGDAQLTTT-------QT-----LQLSGALIVSTPQD 175 (207)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~-l~~~~~~l~~~~~D~IiiD~~~~~~~~~~~~~-------~~-----~~~d~vi~v~~~~~ 175 (207)
. ...+ ... ...+...+. .+||+||+|+|+........+. .+ ...|.+++|+++.
T Consensus 167 s---~~~~--------~~v~~~al~~a~~-~~~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~- 233 (306)
T 1vma_A 167 E---GADP--------AAVAFDAVAHALA-RNKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDAT- 233 (306)
T ss_dssp T---TCCH--------HHHHHHHHHHHHH-TTCSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGG-
T ss_pred C---ccCH--------HHHHHHHHHHHHh-cCCCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECC-
Confidence 0 0010 111 122233345 8999999999985432211111 11 1367889998876
Q ss_pred hhHHHHHHHHHHhhhCCCCeeEEEEccccC
Q 028600 176 VALIDARKGITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 176 ~~~~~~~~~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
+..+.+... +.+.+ ..++.|+|+|+.|.
T Consensus 234 t~~~~l~~a-~~~~~-~~~i~gvVlTk~D~ 261 (306)
T 1vma_A 234 TGQNGLVQA-KIFKE-AVNVTGIILTKLDG 261 (306)
T ss_dssp GHHHHHHHH-HHHHH-HSCCCEEEEECGGG
T ss_pred CCHHHHHHH-HHHHh-cCCCCEEEEeCCCC
Confidence 343444333 34433 25677999999884
No 48
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=99.43 E-value=5e-13 Score=110.07 Aligned_cols=147 Identities=22% Similarity=0.251 Sum_probs=88.5
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccccCCccccccccceecccccceeecccc
Q 028600 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGF 109 (207)
Q Consensus 30 ~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (207)
.+++|+++ +.+|+||||++.+||.+++. .|++|+++|+|.+.+.....+..- ....++.......
T Consensus 96 ~~~vI~lv-G~~GsGKTTt~~kLA~~l~~-~G~kVllv~~D~~r~~a~eqL~~~-------------~~~~gv~~~~~~~ 160 (433)
T 3kl4_A 96 LPFIIMLV-GVQGSGKTTTAGKLAYFYKK-RGYKVGLVAADVYRPAAYDQLLQL-------------GNQIGVQVYGEPN 160 (433)
T ss_dssp SSEEEEEC-CCTTSCHHHHHHHHHHHHHH-TTCCEEEEEECCSCHHHHHHHHHH-------------HHTTTCCEECCTT
T ss_pred CCeEEEEE-CCCCCCHHHHHHHHHHHHHH-cCCeEEEEecCccchhHHHHHHHH-------------HHhcCCceeeccc
Confidence 36788886 67899999999999999999 999999999998765422111100 0001111111110
Q ss_pred cCCCCCcccccchhhHHHHHHHHHhcccCCCCEEEEcCCCCCC--cc-hh-----hhhhhhcCceEEEeeCCchhhHHHH
Q 028600 110 LVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTG--DA-QL-----TTTQTLQLSGALIVSTPQDVALIDA 181 (207)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~D~IiiD~~~~~~--~~-~~-----~~~~~~~~d~vi~v~~~~~~~~~~~ 181 (207)
. ..........+..++...||+||||+++... .. .+ .+......|.+++|+++... ..+
T Consensus 161 -----~------~dp~~i~~~al~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~g--q~a 227 (433)
T 3kl4_A 161 -----N------QNPIEIAKKGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIG--QKA 227 (433)
T ss_dssp -----C------SCHHHHHHHHHHHTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGG--GGG
T ss_pred -----c------CCHHHHHHHHHHHHHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccc--hHH
Confidence 0 0112334455666643689999999997543 11 11 11112245889999888642 223
Q ss_pred HHHHHHhhhCCCCeeEEEEccccC
Q 028600 182 RKGITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 182 ~~~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
....+.+.+ ...+.|+|+|++|.
T Consensus 228 ~~~a~~f~~-~~~~~gVIlTKlD~ 250 (433)
T 3kl4_A 228 YDLASRFHQ-ASPIGSVIITKMDG 250 (433)
T ss_dssp HHHHHHHHH-HCSSEEEEEECGGG
T ss_pred HHHHHHHhc-ccCCcEEEEecccc
Confidence 334444443 23556999999985
No 49
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.27 E-value=8.5e-12 Score=100.82 Aligned_cols=152 Identities=13% Similarity=0.104 Sum_probs=81.4
Q ss_pred CCCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccc-cccccCCccccccccceecccccceeecc
Q 028600 29 GVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPM-MMKIDQKPEVTKDMKMVPIENYGVKCMSM 107 (207)
Q Consensus 29 ~~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (207)
+...+|+++ +++|+||||++.+|+..++. .|++|+++|.|++.+.... .++.... ........++...+.
T Consensus 77 ~~~~~I~i~-G~~G~GKSTl~~~L~~~l~~-~g~kV~vi~~Dp~~~~~~g~~l~d~~~-------~~~~~~~~~~~i~~~ 147 (355)
T 3p32_A 77 GNAHRVGIT-GVPGVGKSTAIEALGMHLIE-RGHRVAVLAVDPSSTRTGGSILGDKTR-------MARLAVHPNAYIRPS 147 (355)
T ss_dssp CCSEEEEEE-CCTTSSHHHHHHHHHHHHHT-TTCCEEEEEEC-----------------------CHHHHTCTTEEEECC
T ss_pred CCceEEEEE-CCCCCCHHHHHHHHHHHHHh-CCCceEEEecCCCCCcccchhccchhh-------HHhhccCCCeeEEEC
Confidence 346788885 67999999999999999999 9999999999997753211 1110000 000001122333222
Q ss_pred cccCCCCCcccccchhhHHHHHHHHHhcccCCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCchhhHHHHHHHHHH
Q 028600 108 GFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITM 187 (207)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~~~~~~~~~~l~~ 187 (207)
+.. ... ........+.+..+...+||++|+|||+ +.... ...+..+|.+++|+++...... ..+...
T Consensus 148 ~~~----~~~----~~~~~~t~d~i~~~~~~~~~~iiiDTpG-i~~~~--~~~~~~aD~vl~V~d~~~~~~~--~~l~~~ 214 (355)
T 3p32_A 148 PTS----GTL----GGVTRATRETVVLLEAAGFDVILIETVG-VGQSE--VAVANMVDTFVLLTLARTGDQL--QGIKKG 214 (355)
T ss_dssp C------CCH----HHHHHHHHHHHHHHHHTTCCEEEEEECS-CSSHH--HHHHTTCSEEEEEEESSTTCTT--TTCCTT
T ss_pred CCC----ccc----cchhHHHHHHHHHHhhCCCCEEEEeCCC-CCcHH--HHHHHhCCEEEEEECCCCCccH--HHHHHh
Confidence 211 100 0112333333333332789999999995 55333 2334589999999987653211 000011
Q ss_pred hhhCCCCeeEEEEccccC
Q 028600 188 FSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 188 l~~~~~~~~g~v~N~~~~ 205 (207)
+. +.+ ..+|+||+|.
T Consensus 215 ~~--~~p-~ivVlNK~Dl 229 (355)
T 3p32_A 215 VL--ELA-DIVVVNKADG 229 (355)
T ss_dssp SG--GGC-SEEEEECCCG
T ss_pred Hh--hcC-CEEEEECCCC
Confidence 11 123 3689999984
No 50
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=99.10 E-value=9.9e-11 Score=88.01 Aligned_cols=45 Identities=18% Similarity=0.110 Sum_probs=41.1
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCC
Q 028600 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPS 75 (207)
Q Consensus 30 ~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~ 75 (207)
.++...|.+.|||+||||++.++|..+++ .|++|+++|+|+++..
T Consensus 4 ~g~l~I~~~~kgGvGKTt~a~~la~~l~~-~G~~V~v~d~D~q~~~ 48 (228)
T 2r8r_A 4 RGRLKVFLGAAPGVGKTYAMLQAAHAQLR-QGVRVMAGVVETHGRA 48 (228)
T ss_dssp CCCEEEEEESSTTSSHHHHHHHHHHHHHH-TTCCEEEEECCCTTCH
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHHHH-CCCCEEEEEeCCCCCh
Confidence 47788888999999999999999999999 9999999999997643
No 51
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.01 E-value=1.6e-09 Score=87.04 Aligned_cols=151 Identities=13% Similarity=0.111 Sum_probs=77.5
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCcc-ccccccCCccccccccceecccccceeeccc
Q 028600 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVP-MMMKIDQKPEVTKDMKMVPIENYGVKCMSMG 108 (207)
Q Consensus 30 ~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (207)
.+.+|++++ ++|+||||+..+|+..++. .|.+|.+++.|++.+... ..++... .. .........-+...+.+
T Consensus 55 ~~~~i~i~G-~~g~GKSTl~~~l~~~~~~-~~~~v~v~~~d~~~~~~~~~il~d~~--~~---~~~~~~~~~~i~~~~~~ 127 (341)
T 2p67_A 55 NTLRLGVTG-TPGAGKSTFLEAFGMLLIR-EGLKVAVIAVDPSSPVTGGSILGDKT--RM---NDLARAEAAFIRPVPSS 127 (341)
T ss_dssp CSEEEEEEE-CTTSCHHHHHHHHHHHHHH-TTCCEEEEEECCC--------------------CTTTTCTTEEEEEECC-
T ss_pred CCEEEEEEc-CCCCCHHHHHHHHHHHHHh-cCCeEEEEeecCCcCCCCcceecccc--hH---HhhccCCCceeecCccc
Confidence 478899865 9999999999999999999 899999999999775422 1111100 00 00000000001111111
Q ss_pred ccCCCCCcccccchhhHHHHHHHHHhcccCCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCchhhHHHHHHHHHHh
Q 028600 109 FLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMF 188 (207)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~~~~~~~~~~l~~l 188 (207)
. ...+ . ...+.+.+..+...+|+++|+|||+... ... .....+|.+++|+++.... .. +.+..
T Consensus 128 ~--------~l~g-~-~~~~~~~~~~~~~~~~~i~liDTpG~~~-~~~--~~~~~aD~vl~Vvd~~~~~--~~-~~l~~- 190 (341)
T 2p67_A 128 G--------HLGG-A-SQRARELMLLCEAAGYDVVIVETVGVGQ-SET--EVARMVDCFISLQIAGGGD--DL-QGIKK- 190 (341)
T ss_dssp ------------C-H-HHHHHHHHHHHHHTTCSEEEEEEECCTT-HHH--HHHTTCSEEEEEECC---------CCCCH-
T ss_pred c--------ccch-h-HHHHHHHHHHhhccCCCEEEEeCCCccc-hHH--HHHHhCCEEEEEEeCCccH--HH-HHHHH-
Confidence 0 0000 1 1222222222211789999999996433 222 2345899999999986431 11 11110
Q ss_pred hhCCCCeeEEEEccccC
Q 028600 189 SKVQVPVCSFLAQIISS 205 (207)
Q Consensus 189 ~~~~~~~~g~v~N~~~~ 205 (207)
...+.+. -+|+||+|.
T Consensus 191 ~~~~~p~-ivv~NK~Dl 206 (341)
T 2p67_A 191 GLMEVAD-LIVINKDDG 206 (341)
T ss_dssp HHHHHCS-EEEECCCCT
T ss_pred hhhcccC-EEEEECCCC
Confidence 1112343 589999984
No 52
>3pzx_A Formate--tetrahydrofolate ligase; HET: TOE; 2.20A {Moorella thermoacetica} SCOP: c.37.1.10 PDB: 1fp7_A 1fpm_A* 3qb6_A* 3qus_A* 3rbo_A* 3sin_A* 1eg7_A
Probab=98.93 E-value=9.6e-10 Score=90.16 Aligned_cols=73 Identities=25% Similarity=0.178 Sum_probs=61.2
Q ss_pred EeecCcccccccccccc-ccCCCCeEEEEEeCCC---CCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccccC
Q 028600 9 TRLGGVRYYAAFGSKDL-KIDGVKDVIAVASGKG---GVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQ 84 (207)
Q Consensus 9 ~~~~~~r~~~~~~~~~~-~~~~~~k~I~v~s~kg---G~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~~ 84 (207)
+.|+..|.++.+..... +..+..|+|.|+|..+ |+||||++.|||.++|+ .|+||+++ .+.|++...|+.+.
T Consensus 34 E~YG~~kAKv~~~~l~~~~~~~~~K~IlVTS~~PTP~GEGKSTtsinLA~alA~-~GkkVLLi---LR~Psl~~~FGikg 109 (557)
T 3pzx_A 34 ELYGKYKAKISLDVYRRLKDKPDGKLILVTAITPTPAGEGKTTTSVGLTDALAR-LGKRVMVC---LREPSLGPSFGIKG 109 (557)
T ss_dssp EEBSSSCEEECHHHHHHTTTSCCCEEEEEEESCCCTTCCCHHHHHHHHHHHHHH-TTCCEEEE---ECCCCSHHHHHTCC
T ss_pred HHhhCeeEEecHHHhhhhhccCCCcEEEEEcCCCCCCCCCchhHHHHHHHHHHH-cCCeEEEE---eCCCCccccCCCCC
Confidence 66778888877654322 1234589999999999 99999999999999999 99999998 99999999999876
Q ss_pred C
Q 028600 85 K 85 (207)
Q Consensus 85 ~ 85 (207)
.
T Consensus 110 g 110 (557)
T 3pzx_A 110 G 110 (557)
T ss_dssp C
T ss_pred C
Confidence 4
No 53
>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*
Probab=98.73 E-value=1.3e-07 Score=84.19 Aligned_cols=66 Identities=5% Similarity=0.001 Sum_probs=49.1
Q ss_pred CCCEEEEcCCCCCCc----chhhhhhhhcC-ceEEEeeCCchhhHHHHHHHHHHhhhCCCCeeEEEEcccc
Q 028600 139 NLDILVIDMPPGTGD----AQLTTTQTLQL-SGALIVSTPQDVALIDARKGITMFSKVQVPVCSFLAQIIS 204 (207)
Q Consensus 139 ~~D~IiiD~~~~~~~----~~~~~~~~~~~-d~vi~v~~~~~~~~~~~~~~l~~l~~~~~~~~g~v~N~~~ 204 (207)
++|++||.+.+++.. ........... -.||+|++....++..+...++.+...+.++.|+|+|+.+
T Consensus 201 ~~D~vvVEGaGGl~~p~~~~~~~adla~~l~~PVILV~d~~lG~i~~~~lt~~~l~~~g~~v~GvI~N~~~ 271 (831)
T 4a0g_A 201 SDLLCLVETAGGVASPGPSGTLQCDLYRPFRLPGILVGDGRLGGISGTIAAYESLKLRGYDIAAVVFEDHG 271 (831)
T ss_dssp -CEEEEEECCSSTTCBCTTSCBHHHHTGGGCCCEEEECCCSTTHHHHHHHHHHHHHTTTCCEEEEEEECCS
T ss_pred cCCEEEEECCCCccCCCCCCccHHHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHHCCCcEEEEEEeCCc
Confidence 899999999875321 11112222222 3599999999999999999999999889999999999865
No 54
>2obn_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: PG4; 2.30A {Anabaena variabilis}
Probab=98.71 E-value=1.7e-07 Score=74.78 Aligned_cols=139 Identities=16% Similarity=0.096 Sum_probs=94.5
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccccCCccccccccceecccccceeeccccc
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGFL 110 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (207)
.+.|.++++-..+||||++..|.+++.+ +|.++.++-..... .+- . ...+.. +...
T Consensus 152 ~k~i~v~GTD~~VGK~~ts~~L~~~l~~-~G~~a~~~~tgqtg-----~~~-~-~~gi~~-Dav~--------------- 207 (349)
T 2obn_A 152 CRRVLTVGTDMAIGKMSTSLELHWAAKL-RGWRSKFLATGQTG-----VML-E-GDGVAL-DAVR--------------- 207 (349)
T ss_dssp SEEEEEEESSSSSSHHHHHHHHHHHHHH-TTCCEEEECCSHHH-----HHH-H-SCSCCG-GGSB---------------
T ss_pred ceEEEEcCCCccccceeHHHHHHHHHHh-cCCcEEEEeccchh-----hhh-h-cCCcch-hHHH---------------
Confidence 7899999999999999999999999999 99999995322111 110 0 000000 0000
Q ss_pred CCCCCcccccchhhHHHHHHHHHhcccCCCCEEEEcCCCCCCcch--hhhhhh--hcCceEEEeeCCchhhH--------
Q 028600 111 VPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQ--LTTTQT--LQLSGALIVSTPQDVAL-------- 178 (207)
Q Consensus 111 ~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~D~IiiD~~~~~~~~~--~~~~~~--~~~d~vi~v~~~~~~~~-------- 178 (207)
.....-.++++...+. ++||+|+|...+++.+.. .+...+ ...|.+|++..++...+
T Consensus 208 ----------~df~aG~ve~~~~~~~-~~~d~vlVEGqGgl~~P~~~~t~~ll~g~~p~~vILv~~~~~g~i~~~~~~~~ 276 (349)
T 2obn_A 208 ----------VDFAAGAVEQMVMRYG-KNYDILHIEGQGSLLHPGSTATLPLIRGSQPTQLVLVHRAGQTHNGNNPHVPI 276 (349)
T ss_dssp ----------HHHHHHHHHHHHHHHT-TTCSEEEECCCCCTTSTTCCTHHHHHHHHCCSEEEEEEETTCCBCSSCTTSBC
T ss_pred ----------HHHHhhhHHHHHHHhc-cCCCEEEEeCCCcccCcChHhHHHHHHHcCCCeEEEEECCCCceECCCCccCC
Confidence 0122335566666676 799999999998754322 112222 24578999999887766
Q ss_pred ---HHHHHHHHHhhh-----CCCCeeEEEEcccc
Q 028600 179 ---IDARKGITMFSK-----VQVPVCSFLAQIIS 204 (207)
Q Consensus 179 ---~~~~~~l~~l~~-----~~~~~~g~v~N~~~ 204 (207)
++...+++.+.. .+.++.|+++|.+.
T Consensus 277 p~l~~~i~t~e~l~~~~~~~~~~~V~Gi~lN~~~ 310 (349)
T 2obn_A 277 PPLPEVIRLYETVASGGGAFGTVPVVGIALNTAH 310 (349)
T ss_dssp CCHHHHHHHHHHHHHTTTTSCCCCEEEEEEECTT
T ss_pred CCHHHHHHHHHHHHHhhccCCCCcEEEEEEECCC
Confidence 777888887765 78899999999875
No 55
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.69 E-value=2.8e-07 Score=76.89 Aligned_cols=42 Identities=31% Similarity=0.301 Sum_probs=36.6
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCC
Q 028600 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (207)
Q Consensus 30 ~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~ 73 (207)
.+.+|++++ ..|+||||+...||..+.. .|.+|++.+.|...
T Consensus 292 ~GeVI~LVG-pNGSGKTTLl~~LAgll~~-~~G~V~l~g~D~~r 333 (503)
T 2yhs_A 292 APFVILMVG-VNGVGKTTTIGKLARQFEQ-QGKSVMLAAGDTFR 333 (503)
T ss_dssp TTEEEEEEC-CTTSSHHHHHHHHHHHHHH-TTCCEEEECCCTTC
T ss_pred CCeEEEEEC-CCcccHHHHHHHHHHHhhh-cCCeEEEecCcccc
Confidence 378999975 5899999999999999998 89999999888754
No 56
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.67 E-value=2.2e-07 Score=74.08 Aligned_cols=147 Identities=14% Similarity=0.148 Sum_probs=84.2
Q ss_pred CCCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccccCCccccccccceecccccceeeccc
Q 028600 29 GVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMG 108 (207)
Q Consensus 29 ~~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (207)
+.+.++++++. .|+||||+...||..+.. .|.+|++.+.|.........+..- ....++.+++..
T Consensus 127 ~~g~vi~lvG~-nGaGKTTll~~Lag~l~~-~~g~V~l~g~D~~r~~a~eql~~~-------------~~~~gv~~v~q~ 191 (328)
T 3e70_C 127 EKPYVIMFVGF-NGSGKTTTIAKLANWLKN-HGFSVVIAASDTFRAGAIEQLEEH-------------AKRIGVKVIKHS 191 (328)
T ss_dssp CSSEEEEEECC-TTSSHHHHHHHHHHHHHH-TTCCEEEEEECCSSTTHHHHHHHH-------------HHHTTCEEECCC
T ss_pred CCCeEEEEECC-CCCCHHHHHHHHHHHHHh-cCCEEEEEeecccccchHHHHHHH-------------HHHcCceEEecc
Confidence 44789999755 899999999999999999 899999999998664422111000 000111111111
Q ss_pred ccCCCCCcccccchhhHHHHHHHH-HhcccCCCCEEEEcCCCCCCcchhh------hhhhhcCceEEEeeCCchhhHHHH
Q 028600 109 FLVPSSSPVVWRGPMVMSALRKMS-REVDWGNLDILVIDMPPGTGDAQLT------TTQTLQLSGALIVSTPQDVALIDA 181 (207)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~l~~~~-~~l~~~~~D~IiiD~~~~~~~~~~~------~~~~~~~d~vi~v~~~~~~~~~~~ 181 (207)
. .. .......+.+ .... ..+|++++|+++........ +......|..+++.++... .++
T Consensus 192 ~------~~-----~p~~~v~e~l~~~~~-~~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~--~~~ 257 (328)
T 3e70_C 192 Y------GA-----DPAAVAYDAIQHAKA-RGIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAG--NAI 257 (328)
T ss_dssp T------TC-----CHHHHHHHHHHHHHH-HTCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGT--THH
T ss_pred c------cC-----CHHHHHHHHHHHHHh-ccchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHH--HHH
Confidence 0 00 0111222222 2233 68999999999754322111 1112257888888885443 344
Q ss_pred HHHHHHhhhCCCCeeEEEEccccC
Q 028600 182 RKGITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 182 ~~~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
.+.+..+.+ ...+.++|+|+.|.
T Consensus 258 ~~~~~~~~~-~~~it~iilTKlD~ 280 (328)
T 3e70_C 258 VEQARQFNE-AVKIDGIILTKLDA 280 (328)
T ss_dssp HHHHHHHHH-HSCCCEEEEECGGG
T ss_pred HHHHHHHHH-hcCCCEEEEeCcCC
Confidence 444444442 12345899999874
No 57
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=98.31 E-value=2.5e-05 Score=61.54 Aligned_cols=43 Identities=28% Similarity=0.315 Sum_probs=37.9
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCC
Q 028600 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGP 74 (207)
Q Consensus 30 ~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~ 74 (207)
.+.+|++++ ..|+||||+...||..+.. .+.+|++.+.|....
T Consensus 101 ~g~vi~lvG-~nGsGKTTll~~Lagll~~-~~g~V~l~g~D~~r~ 143 (304)
T 1rj9_A 101 KGRVVLVVG-VNGVGKTTTIAKLGRYYQN-LGKKVMFCAGDTFRA 143 (304)
T ss_dssp SSSEEEEEC-STTSSHHHHHHHHHHHHHT-TTCCEEEECCCCSST
T ss_pred CCeEEEEEC-CCCCcHHHHHHHHHHHHHh-cCCEEEEEeecCCCh
Confidence 478999985 5899999999999999998 899999999997653
No 58
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=98.30 E-value=9.4e-06 Score=64.91 Aligned_cols=42 Identities=33% Similarity=0.359 Sum_probs=36.7
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCC
Q 028600 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (207)
Q Consensus 30 ~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~ 73 (207)
.+.+++++ +..|+||||+.-.|+..+.. .+.+|.++..|+..
T Consensus 54 ~g~~v~i~-G~~GaGKSTLl~~l~g~~~~-~~g~v~i~~~d~~~ 95 (337)
T 2qm8_A 54 RAIRVGIT-GVPGVGKSTTIDALGSLLTA-AGHKVAVLAVDPSS 95 (337)
T ss_dssp CSEEEEEE-CCTTSCHHHHHHHHHHHHHH-TTCCEEEEEECGGG
T ss_pred CCeEEEEE-CCCCCCHHHHHHHHHHhhhh-CCCEEEEEEEcCcc
Confidence 37788885 88999999999999999988 89999999988854
No 59
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=98.30 E-value=1.3e-06 Score=65.19 Aligned_cols=39 Identities=21% Similarity=0.279 Sum_probs=33.2
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~ 72 (207)
.++|+++ +.+|+||||+..+|+..+.. . +++.+++.|+.
T Consensus 30 ~~~i~i~-G~~g~GKTTl~~~l~~~~~~-~-~~~~~i~~d~~ 68 (221)
T 2wsm_A 30 TVAVNIM-GAIGSGKTLLIERTIERIGN-E-VKIGAMLGDVV 68 (221)
T ss_dssp CEEEEEE-ECTTSCHHHHHHHHHHHHTT-T-SCEEEEECSCC
T ss_pred ceEEEEE-cCCCCCHHHHHHHHHHHhcc-C-CeEEEEecCCC
Confidence 5677776 68999999999999998866 4 89999998875
No 60
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.28 E-value=2e-05 Score=63.29 Aligned_cols=147 Identities=12% Similarity=0.121 Sum_probs=72.2
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCc-cccccccCCccccccccceeccc-cc--ceeec
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSV-PMMMKIDQKPEVTKDMKMVPIEN-YG--VKCMS 106 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~ 106 (207)
..+|+++ +.+|+||||+.-.|+..+.. .+.+|.++..|+..... ..+++... .+..... .. +...+
T Consensus 74 ~~~v~lv-G~pgaGKSTLln~L~~~~~~-~~~~v~V~~~dp~~~~~~g~~l~d~~--------rm~~~~~~~~~~v~~~~ 143 (349)
T 2www_A 74 AFRVGLS-GPPGAGKSTFIEYFGKMLTE-RGHKLSVLAVDPSSCTSGGSLLGDKT--------RMTELSRDMNAYIRPSP 143 (349)
T ss_dssp CEEEEEE-CCTTSSHHHHHHHHHHHHHH-TTCCEEEEECCC------------------------CCSTTCTTEEEECC-
T ss_pred ceEEEEE-cCCCCCHHHHHHHHHHHhhh-cCCeEEEEeecCCCCCcCcchhchHH--------HHHHhcCCCCEEEEecC
Confidence 5677774 99999999999999999988 89999999999876432 11111110 0000000 00 00011
Q ss_pred ccccCCCCCcccccchhhHHHHHHHHHhcccCCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCchhhHHHHHHHHH
Q 028600 107 MGFLVPSSSPVVWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGIT 186 (207)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~~~~~~~~~~l~ 186 (207)
.+....... ....+.+. .+.. .+||++|+||++ +...... ....+|.+++|+++.... .......
T Consensus 144 ~~~~lgg~t------r~~~~~~~-~~~~---~~~~~iliDT~G-i~~~~~~--l~~~~d~vl~V~d~~~~~--~~~~i~~ 208 (349)
T 2www_A 144 TRGTLGGVT------RTTNEAIL-LCEG---AGYDIILIETVG-VGQSEFA--VADMVDMFVLLLPPAGGD--ELQGIKR 208 (349)
T ss_dssp --------C------TTHHHHHH-HHHH---TTCSEEEEECCC-C--CHHH--HHTTCSEEEEEECCC------------
T ss_pred Cccccccch------HHHHHHHH-hhcc---CCCCEEEEECCC-cchhhhh--HHhhCCEEEEEEcCCcch--hHHHhHH
Confidence 100000000 01112221 1222 789999999996 4332332 345799999999886431 1111111
Q ss_pred HhhhCCCCeeEEEEccccC
Q 028600 187 MFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 187 ~l~~~~~~~~g~v~N~~~~ 205 (207)
.+ ...+. -+|+||+|.
T Consensus 209 ~i--l~~~~-ivVlNK~Dl 224 (349)
T 2www_A 209 GI--IEMAD-LVAVTKSDG 224 (349)
T ss_dssp ----CCSCS-EEEECCCSG
T ss_pred HH--HhcCC-EEEEeeecC
Confidence 11 12343 578899874
No 61
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=98.26 E-value=2.8e-06 Score=71.92 Aligned_cols=67 Identities=12% Similarity=0.062 Sum_probs=50.8
Q ss_pred CCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCchhhHHHHHHHHHHhhhCCCCeeEEEEccccC
Q 028600 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~~~~~~~~~~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
..+.+.|+|||+...........+..+|.+|+|+++...-.......+..+...++++ -+++||.|.
T Consensus 80 ~~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~~~ipi-ivviNK~Dl 146 (529)
T 2h5e_A 80 HDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPI-LTFMNKLDR 146 (529)
T ss_dssp TTEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHTTTTCCE-EEEEECTTS
T ss_pred CCeEEEEEECCCChhHHHHHHHHHHHCCEEEEEEeCCccchHHHHHHHHHHHHcCCCE-EEEEcCcCC
Confidence 5688999999974332233455667899999999987755566677777787788885 689999985
No 62
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=98.20 E-value=5.8e-06 Score=72.34 Aligned_cols=67 Identities=16% Similarity=0.091 Sum_probs=51.4
Q ss_pred CCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCchhhHHHHHHHHHHhhhCCCCeeEEEEccccC
Q 028600 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~~~~~~~~~~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
..|++.|+|||+-..........+..+|.+|+|+++.......+...+..+...+++++ +++||.|.
T Consensus 80 ~~~~i~liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~~ip~i-lviNKiD~ 146 (704)
T 2rdo_7 80 EPHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKYKVPRI-AFVNKMDR 146 (704)
T ss_pred CceeEEEEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEE-EEEeCCCc
Confidence 66999999999754322334556668999999999987666667777777777788875 88999985
No 63
>2g0t_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 2.67A {Thermotoga maritima} SCOP: c.37.1.10
Probab=98.14 E-value=3.9e-05 Score=61.35 Aligned_cols=136 Identities=20% Similarity=0.205 Sum_probs=84.2
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccccCCccccccccceecccccceeeccccc
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQKPEVTKDMKMVPIENYGVKCMSMGFL 110 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (207)
.++|.++++-.++|||+++..|..++.+ .|.++..+-..... .+.+.+ .++... .
T Consensus 169 ~~ri~v~GTDt~vGKt~t~~~L~~~l~~-~G~~v~~v~tgqtg----~li~~~--~gv~~D-~----------------- 223 (350)
T 2g0t_A 169 IKVVGVFGTDCVVGKRTTAVQLWERALE-KGIKAGFLATGQTG----ILIGAD--AGYVID-A----------------- 223 (350)
T ss_dssp SEEEEEEESSSSSSHHHHHHHHHHHHHH-TTCCEEEEECSHHH----HHTTCS--EECCGG-G-----------------
T ss_pred ceEEEEecCCCCccCccHHHHHHHHHHh-cCCeEEEEccCcee----eeeccC--CCCCCC-c-----------------
Confidence 7899999999999999999999999999 99999886433221 011000 000000 0
Q ss_pred CCCCCcccccchhhHHHHHHHHHhc-ccCCCCEEEEcCCCCCCcchh---hhhhh--hcCceEEEeeCCc----------
Q 028600 111 VPSSSPVVWRGPMVMSALRKMSREV-DWGNLDILVIDMPPGTGDAQL---TTTQT--LQLSGALIVSTPQ---------- 174 (207)
Q Consensus 111 ~~~~~~~~~~~~~~~~~l~~~~~~l-~~~~~D~IiiD~~~~~~~~~~---~~~~~--~~~d~vi~v~~~~---------- 174 (207)
... .......+.++..+ + +++|++|+...+++..... ++..+ ...|.+|+.-.+.
T Consensus 224 ----~~~----~~~ag~~e~~i~~~~~-~~~D~ivVEGqGgl~~P~~~~v~~~ll~g~~p~~vIl~h~~~r~~~~~~~~~ 294 (350)
T 2g0t_A 224 ----VPA----DFVSGVVEKAVLKLEK-TGKEIVFVEGQGALRHPAYGQVTLGLLYGSNPDVVFLVHDPSRDHFESFPEI 294 (350)
T ss_dssp ----SBG----GGHHHHHHHHHHHHHH-TTCSEEEEECCSCTTCTTTHHHHHHHHHHHCCSEEEEECCTTCSSCTTCTTS
T ss_pred ----eec----chhhHHHHhhHHHhhh-cCCCEEEEccCeeccccCchHHHHHHHcCCCCCEEEEEeCCCCccccCCCcc
Confidence 000 01122223333333 4 8999999999987654332 12222 2468888877654
Q ss_pred -h-hhHHHHHHHHHHhhhCCCCeeEEE-Ecc
Q 028600 175 -D-VALIDARKGITMFSKVQVPVCSFL-AQI 202 (207)
Q Consensus 175 -~-~~~~~~~~~l~~l~~~~~~~~g~v-~N~ 202 (207)
. .+++...++++.+. +.+++|++ +|.
T Consensus 295 ~~~~~i~~~i~~ie~l~--~~~V~gi~~lN~ 323 (350)
T 2g0t_A 295 PKKPDFEEERRLIETLS--NAKVIGGVSLNG 323 (350)
T ss_dssp SCCCCHHHHHHHHHHSS--SCEEEEEECSSC
T ss_pred cCCcCHHHHHHHHHHhc--CCcEEEEEEcCc
Confidence 1 35566666666665 67899999 985
No 64
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=98.06 E-value=1.5e-05 Score=67.77 Aligned_cols=68 Identities=15% Similarity=0.108 Sum_probs=56.6
Q ss_pred CCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCchhhHHHHHHHHHHhhhCCCCeeEEEEccccCC
Q 028600 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPVCSFLAQIISSM 206 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~~~~~~~~~~l~~l~~~~~~~~g~v~N~~~~~ 206 (207)
++|-+=|||||+-.+...-...++..+|.+|+|+++...-..++...++++.+.+++++ +++||.|+.
T Consensus 98 ~~~~iNlIDTPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~~lp~i-~fINK~Dr~ 165 (548)
T 3vqt_A 98 RDRVVNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMRATPVM-TFVNKMDRE 165 (548)
T ss_dssp TTEEEEEECCCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEE-EEEECTTSC
T ss_pred CCEEEEEEeCCCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHHhCCceE-EEEecccch
Confidence 57889999999743332334667778999999999999889999999999999999984 899999963
No 65
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=98.06 E-value=0.00018 Score=57.86 Aligned_cols=42 Identities=29% Similarity=0.296 Sum_probs=37.1
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCC
Q 028600 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (207)
Q Consensus 30 ~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~ 73 (207)
.+.+|++.+ ..|+||||+...||..+.. .+.+|++.+.|...
T Consensus 156 ~g~vi~lvG-~nGsGKTTll~~Lag~l~~-~~G~V~l~g~D~~r 197 (359)
T 2og2_A 156 KPAVIMIVG-VNGGGKTTSLGKLAHRLKN-EGTKVLMAAGDTFR 197 (359)
T ss_dssp SSEEEEEEC-CTTSCHHHHHHHHHHHHHH-TTCCEEEECCCCSC
T ss_pred CCeEEEEEc-CCCChHHHHHHHHHhhccc-cCCEEEEecccccc
Confidence 478999975 6999999999999999998 89999999988754
No 66
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=98.03 E-value=0.00019 Score=56.45 Aligned_cols=42 Identities=29% Similarity=0.296 Sum_probs=37.0
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCC
Q 028600 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (207)
Q Consensus 30 ~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~ 73 (207)
.+.++++.+ ..|+||||+...||..+.. .+.+|.+.+.|...
T Consensus 99 ~g~vi~lvG-~nGsGKTTll~~Lag~l~~-~~g~V~l~g~d~~r 140 (302)
T 3b9q_A 99 KPAVIMIVG-VNGGGKTTSLGKLAHRLKN-EGTKVLMAAGDTFR 140 (302)
T ss_dssp SCEEEEEEC-CTTSCHHHHHHHHHHHHHH-TTCCEEEECCCCSC
T ss_pred CCcEEEEEc-CCCCCHHHHHHHHHHHHHH-cCCeEEEEeecccc
Confidence 478999975 5999999999999999998 89999999888754
No 67
>1vco_A CTP synthetase; tetramer, riken structural genomics/proteomics initiative, RSGI, structural genomics, ligase; HET: GLN; 2.15A {Thermus thermophilus} SCOP: c.23.16.1 c.37.1.10 PDB: 1vcn_A 1vcm_A
Probab=98.02 E-value=4.5e-05 Score=64.46 Aligned_cols=167 Identities=12% Similarity=0.104 Sum_probs=92.3
Q ss_pred CCeEEEEE-eCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccc--------cCCccccccccceecccc
Q 028600 30 VKDVIAVA-SGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKI--------DQKPEVTKDMKMVPIENY 100 (207)
Q Consensus 30 ~~k~I~v~-s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~--------~~~~~~~~~~~~~~~~~~ 100 (207)
|+|-|.|+ +...++||+.+++.|++.|.+ .|.+|..+-.||+-+-=+..+.. ..+..-.+.+.-.++...
T Consensus 11 ~~~~i~v~gg~~s~~gk~~~~~~~~~~l~~-~g~~v~~~k~~py~n~d~~~ms~~~hge~~vt~dg~e~~~~~g~~~~~~ 89 (550)
T 1vco_A 11 PRKYVFITGGVVSSLGKGILTSSLGALLRA-RGYRVTAIKIDPYVNVDAGTMRPYEHGEVFVTADGAETDLDIGHYERFL 89 (550)
T ss_dssp CCEEEEEEECSSSCSCHHHHHHHHHHHHHT-TTCCEEEEEEECSSCSSGGGSCSSTTSCCEECTTCCEECTHHHHHHHHH
T ss_pred ceeEEEEeCCcccCcchHHHHHHHHHHHHh-CCceeeEeecccccccCccccCcccCCceEECCCCceehhhhccHHhcC
Confidence 56889999 999999999999999999999 99999999998643110000000 000000000000000111
Q ss_pred cceeecc------------------cccCCCCCcccccchhhHHHHHHHHHhcccC--CCCEEEEcCCCCCCcchh-h-h
Q 028600 101 GVKCMSM------------------GFLVPSSSPVVWRGPMVMSALRKMSREVDWG--NLDILVIDMPPGTGDAQL-T-T 158 (207)
Q Consensus 101 ~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~--~~D~IiiD~~~~~~~~~~-~-~ 158 (207)
++.+-+. |....... .-.+-..+.+++.++.+. + .||+||+...++.+|-.- . +
T Consensus 90 ~~~l~~~~~~~~g~~~~~~~~~~~~~~y~~~~~---~~~~~~~~~i~~~~~~~~-~~~~~d~~i~e~~gt~~di~~~~~~ 165 (550)
T 1vco_A 90 DMDLSRGNNLTTGQVYLSVIQKERRGEYLSQTV---QVIPHITDEIKERIRKVA-EEQKAEIVVVEVGGTVGDIESLPFL 165 (550)
T ss_dssp TSCCCGGGEEEHHHHHHHHHHHHHTTTTTTCCC---CTTTHHHHHHHHHHHHHH-HHTTCSEEEEEECSCTTSSTTHHHH
T ss_pred CcccCCCCCeeccEEchhhhhhhcccccccCce---EEhhHHHHHHHHHHHHHh-cccCCCEEEEECCCChhHhhhHHHH
Confidence 1111110 00110000 011223455667777776 5 899999999987665321 0 1
Q ss_pred hhhh------cCceE------EEe--eCCchhhHHHHHHHHHHhhhCCCCeeEEEEc
Q 028600 159 TQTL------QLSGA------LIV--STPQDVALIDARKGITMFSKVQVPVCSFLAQ 201 (207)
Q Consensus 159 ~~~~------~~d~v------i~v--~~~~~~~~~~~~~~l~~l~~~~~~~~g~v~N 201 (207)
.+++ ..+.+ ++| -..+...-..++...+.++..+++.-++|+-
T Consensus 166 ~~~rq~~~~~~~~~~~~~h~~~~p~~~~~~e~ktkptq~sv~~lrs~gi~pd~lvvR 222 (550)
T 1vco_A 166 EAIRQFRFDEGEGNTLYLHLTLVPYLETSEEFKTKPTQHSVATLRGVGIQPDILVLR 222 (550)
T ss_dssp HHHHTHHHHHCTTSEEEEEEEECCEETTTTEECCHHHHHHHHHHHHTTCCCSEEEEE
T ss_pred HHHHHHhHhhCcCCEEEEEEeCeecccCCCCcCCCCcchhHHHHhcCCCccCEEEEe
Confidence 1111 11222 222 2234445567888899999999998887764
No 68
>1s1m_A CTP synthase; CTP synthetase, UTP:ammonia ligase (ADP-forming), cytidine 5 triphosphate synthase, ammonia lyase; 2.30A {Escherichia coli} SCOP: c.23.16.1 c.37.1.10 PDB: 2ad5_A*
Probab=98.00 E-value=9e-05 Score=62.54 Aligned_cols=168 Identities=15% Similarity=0.116 Sum_probs=92.9
Q ss_pred CeEEEEE-eCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccc--------cCCccccccccceeccccc
Q 028600 31 KDVIAVA-SGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKI--------DQKPEVTKDMKMVPIENYG 101 (207)
Q Consensus 31 ~k~I~v~-s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~--------~~~~~~~~~~~~~~~~~~~ 101 (207)
+|-|.|+ +...++||+.+++.|++.|++ .|.+|..+-+||+-+-=+..+.. ..+..-.+.+.-.++...+
T Consensus 3 ~~~i~v~gg~~s~~gk~~~~~~l~~~l~~-~g~~v~~~k~~py~n~d~~~ms~~~hge~~vt~dg~e~~~~~~~~~~~~~ 81 (545)
T 1s1m_A 3 TNYIFVTGGVVSSLGKGIAAASLAAILEA-RGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIR 81 (545)
T ss_dssp CEEEEEEECSSSCSCHHHHHHHHHHHHHT-TTCCEEEEEEECCSCSCGGGSCTTTSCCCEECTTSCEECTHHHHHHHHCS
T ss_pred ceEEEEeCCcccCcchHHHHHHHHHHHHh-CCceeeeeeccccccCCCCccCcccCCCeEECCCCCeehhhhccceeeec
Confidence 5789999 999999999999999999999 99999999998643110000000 0011111100011111111
Q ss_pred ceeecccccC-----C----C---CCcc---cccchhhHHHHHHHHHhcccCCCCEEEEcCCCCCCcchhhhhhhh----
Q 028600 102 VKCMSMGFLV-----P----S---SSPV---VWRGPMVMSALRKMSREVDWGNLDILVIDMPPGTGDAQLTTTQTL---- 162 (207)
Q Consensus 102 ~~~~~~~~~~-----~----~---~~~~---~~~~~~~~~~l~~~~~~l~~~~~D~IiiD~~~~~~~~~~~~~~~~---- 162 (207)
+.+-+.+... . . ..+. ..-.+-..+.+.+.+..+. +.||+||+...++.+|-.- +..++
T Consensus 82 ~~l~~~~~~~~g~~~~~~~~~~~~~~y~~~~~~~~~~~~~~i~~~~~~~~-~~~d~~i~e~~gt~~di~~-~~~~~~~~q 159 (545)
T 1s1m_A 82 TKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGG-EGHDVVLVEIGGTVGDIES-LPFLEAIRQ 159 (545)
T ss_dssp SCCCGGGEEEHHHHHHHHHHHHHTTTTTTCCCCHHHHHHHHHHHHHHHHH-TTCSEEEEEECSCTTSSTT-HHHHHHHHH
T ss_pred eeecCCCCeeccEEeeehhhhccccccccCceeehhHHHHHHHHHHHHHh-ccCCEEEEECCCChhhhhC-hHHHHHHHH
Confidence 1111111100 0 0 0000 0001122455677888888 8999999999987664321 11111
Q ss_pred -----cCceEE------Ee--eCCchhhHHHHHHHHHHhhhCCCCeeEEEEc
Q 028600 163 -----QLSGAL------IV--STPQDVALIDARKGITMFSKVQVPVCSFLAQ 201 (207)
Q Consensus 163 -----~~d~vi------~v--~~~~~~~~~~~~~~l~~l~~~~~~~~g~v~N 201 (207)
..+.++ +| -..+...-.-++...+.++..+++.-++|+-
T Consensus 160 ~~~~~~~~~~~~~h~~~~p~~~~~ge~ktkptq~sv~~l~s~gi~pd~lv~R 211 (545)
T 1s1m_A 160 MAVEIGREHTLFMHLTLVPYMAASGEVKTKPTQHSVKELLSIGIQPDILICR 211 (545)
T ss_dssp HHHHHCTTSEEEEEEEECCEETTTTEECCHHHHHHHHHHHTTTCCCSEEEEE
T ss_pred HhHhhCcCcEEEEEEeCcccccCCCCcCCCCCcCCHHHHhCCCCccCEEEEe
Confidence 112222 22 2223344567888899999999998777764
No 69
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=97.89 E-value=5.4e-05 Score=61.96 Aligned_cols=68 Identities=19% Similarity=0.251 Sum_probs=50.1
Q ss_pred CCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCchhhHHHHHHHHHHhhhCCCCeeEEEEccccC
Q 028600 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~~~~~~~~~~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
..+.+.|+|||+-..........+..+|.+++|+++.........+.+..+...+++.+-+++||.|.
T Consensus 73 ~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~~ip~iivviNK~Dl 140 (405)
T 2c78_A 73 AKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDM 140 (405)
T ss_dssp SSCEEEEEECCCSGGGHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGGG
T ss_pred CCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEECccc
Confidence 56889999999532212233444557999999999877666677778888888888855689999984
No 70
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=97.88 E-value=6.1e-05 Score=65.83 Aligned_cols=67 Identities=15% Similarity=0.080 Sum_probs=49.8
Q ss_pred CCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCchhhHHHHHHHHHHhhhCCCCeeEEEEccccC
Q 028600 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~~~~~~~~~~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
..+.+.|+|||+-..........+..+|.+++|+++...-.......+..+.+.+.+++ +++||.|.
T Consensus 73 ~~~~i~liDTPG~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~~~~~~~p~i-lviNK~Dl 139 (693)
T 2xex_A 73 EGHRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQATTYGVPRI-VFVNKMDK 139 (693)
T ss_dssp TTEEEEEECCCCCSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEE-EEEECTTS
T ss_pred CCeeEEEEECcCCcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHHHHHcCCCEE-EEEECCCc
Confidence 46889999999754333344566678999999999876544555666777777788874 88999985
No 71
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.87 E-value=2.7e-05 Score=55.93 Aligned_cols=42 Identities=21% Similarity=0.173 Sum_probs=36.0
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCC
Q 028600 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (207)
Q Consensus 30 ~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~ 73 (207)
++++|+|++ ..|+||||++..|+..|.. .|.+|.+|..|+..
T Consensus 3 ~~~~i~i~G-~sGsGKTTl~~~L~~~l~~-~g~~v~~ik~~~~~ 44 (169)
T 1xjc_A 3 AMNVWQVVG-YKHSGKTTLMEKWVAAAVR-EGWRVGTVKHHGHG 44 (169)
T ss_dssp -CCEEEEEC-CTTSSHHHHHHHHHHHHHH-TTCCEEEEECCC--
T ss_pred CCEEEEEEC-CCCCCHHHHHHHHHHhhHh-cCCeeeEEEeCCCC
Confidence 378899976 6699999999999999999 99999999998754
No 72
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.85 E-value=5.6e-05 Score=60.83 Aligned_cols=40 Identities=18% Similarity=0.277 Sum_probs=35.3
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~ 72 (207)
++++.+ .+.+|+||||++.++|..+++ .|.+|++||++..
T Consensus 63 G~ii~I-~G~pGsGKTtLal~la~~~~~-~g~~vlyid~E~s 102 (356)
T 1u94_A 63 GRIVEI-YGPESSGKTTLTLQVIAAAQR-EGKTCAFIDAEHA 102 (356)
T ss_dssp TSEEEE-ECSTTSSHHHHHHHHHHHHHH-TTCCEEEEESSCC
T ss_pred CeEEEE-ECCCCCCHHHHHHHHHHHHHH-CCCeEEEEeCCCC
Confidence 566666 579999999999999999999 9999999999753
No 73
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=97.85 E-value=0.00011 Score=53.91 Aligned_cols=39 Identities=26% Similarity=0.297 Sum_probs=32.4
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCC
Q 028600 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (207)
Q Consensus 30 ~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~ 71 (207)
.+.++.+ .++| .||||.|..+|...+. .|+||+++=+..
T Consensus 28 ~g~i~v~-tG~G-kGKTTaA~GlalRA~g-~G~rV~~vQF~K 66 (196)
T 1g5t_A 28 RGIIIVF-TGNG-KGKTTAAFGTAARAVG-HGKNVGVVQFIK 66 (196)
T ss_dssp CCCEEEE-ESSS-SCHHHHHHHHHHHHHH-TTCCEEEEESSC
T ss_pred CceEEEE-CCCC-CCHHHHHHHHHHHHHH-CCCeEEEEEeeC
Confidence 3555555 4666 9999999999999999 999999997665
No 74
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=97.84 E-value=5e-06 Score=70.34 Aligned_cols=67 Identities=13% Similarity=0.078 Sum_probs=52.2
Q ss_pred CCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCchhhHHHHHHHHHHhhhCCCCeeEEEEccccC
Q 028600 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~~~~~~~~~~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
..+.+.|+|||+-..........+..+|.+++|+++...........+..+...++++ -+++||.|.
T Consensus 80 ~~~~i~liDTPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~~iPi-ivviNK~Dl 146 (528)
T 3tr5_A 80 KDYLINLLDTPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLRHTPI-MTFINKMDR 146 (528)
T ss_dssp TTEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHTTTCCE-EEEEECTTS
T ss_pred CCEEEEEEECCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCE-EEEEeCCCC
Confidence 4688999999975433344456677899999999998766666777888888888887 589999985
No 75
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=97.80 E-value=0.00025 Score=55.85 Aligned_cols=66 Identities=12% Similarity=0.121 Sum_probs=45.7
Q ss_pred CCCEEEEcCCCCCCcc----------hhhhhhhhcCceEEEeeCCchh-hHHHHHHHHHHhhhCCCCeeEEEEccccC
Q 028600 139 NLDILVIDMPPGTGDA----------QLTTTQTLQLSGALIVSTPQDV-ALIDARKGITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 139 ~~D~IiiD~~~~~~~~----------~~~~~~~~~~d~vi~v~~~~~~-~~~~~~~~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
.+.++++|||+..... ......+..+|.+++|+++... +.......++.+.+.+.++ -+|+||.|.
T Consensus 58 ~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~~~pv-ilV~NK~Dl 134 (308)
T 3iev_A 58 EAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPV-IVVINKIDK 134 (308)
T ss_dssp TEEEEEEECCCCCCCCTTCHHHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGGCCCE-EEEEECGGG
T ss_pred CCeEEEEECcCCCccccchhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhcCCCE-EEEEECccC
Confidence 6789999999643322 1224455679999999998764 3444333377888777777 489999884
No 76
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=97.79 E-value=5.5e-05 Score=61.76 Aligned_cols=68 Identities=15% Similarity=0.170 Sum_probs=48.5
Q ss_pred CCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCchhhHHHHHHHHHHhhhCCCCeeEEEEccccC
Q 028600 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~~~~~~~~~~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
..+.+.|+|||+-..........+..+|.+++|+++......+..+.+..+...+++.+-+++||.|.
T Consensus 64 ~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~vp~iivviNK~Dl 131 (397)
T 1d2e_A 64 AARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADA 131 (397)
T ss_dssp SSCEEEEEECSSHHHHHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGG
T ss_pred CCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCeEEEEEECccc
Confidence 56899999999522111122334456999999999887656666777777777888865689999984
No 77
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.76 E-value=9.1e-05 Score=59.79 Aligned_cols=40 Identities=18% Similarity=0.240 Sum_probs=35.5
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~ 72 (207)
++++.| .+.+|+||||++.++|..+++ .|.+|++||++..
T Consensus 74 G~li~I-~G~pGsGKTtlal~la~~~~~-~g~~vlyi~~E~s 113 (366)
T 1xp8_A 74 GRITEI-YGPESGGKTTLALAIVAQAQK-AGGTCAFIDAEHA 113 (366)
T ss_dssp TSEEEE-EESTTSSHHHHHHHHHHHHHH-TTCCEEEEESSCC
T ss_pred CcEEEE-EcCCCCChHHHHHHHHHHHHH-CCCeEEEEECCCC
Confidence 667777 578899999999999999999 8999999999863
No 78
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=97.72 E-value=0.00012 Score=64.03 Aligned_cols=67 Identities=18% Similarity=0.127 Sum_probs=50.9
Q ss_pred CCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCchhhHHHHHHHHHHhhhCCCCeeEEEEccccC
Q 028600 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~~~~~~~~~~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
..+.+.|+|||+-..........+..+|.+++|+++...........+..+.+.+.+++ +++||.|.
T Consensus 75 ~~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~~~~p~i-vviNKiD~ 141 (691)
T 1dar_A 75 KDHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRI-AFANKMDK 141 (691)
T ss_dssp TTEEEEEECCCSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEE-EEEECTTS
T ss_pred CCeEEEEEECcCccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHHHHHcCCCEE-EEEECCCc
Confidence 46889999999754433344556668999999999887655666677777778888874 88999985
No 79
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.67 E-value=0.00032 Score=52.67 Aligned_cols=37 Identities=14% Similarity=0.087 Sum_probs=31.6
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEec
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDA 69 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~ 69 (207)
+.++.+ .+..|+||||.+..++..++. .|++|+++..
T Consensus 12 G~i~li-tG~mGsGKTT~ll~~~~r~~~-~g~kVli~~~ 48 (223)
T 2b8t_A 12 GWIEFI-TGPMFAGKTAELIRRLHRLEY-ADVKYLVFKP 48 (223)
T ss_dssp CEEEEE-ECSTTSCHHHHHHHHHHHHHH-TTCCEEEEEE
T ss_pred cEEEEE-ECCCCCcHHHHHHHHHHHHHh-cCCEEEEEEe
Confidence 455554 688899999999999999999 9999999943
No 80
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=97.62 E-value=0.0002 Score=57.88 Aligned_cols=67 Identities=7% Similarity=-0.087 Sum_probs=49.4
Q ss_pred CCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCchhhHHHHHHHHHHhhhCCCCeeEEEEc-cccC
Q 028600 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPVCSFLAQ-IISS 205 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~~~~~~~~~~l~~l~~~~~~~~g~v~N-~~~~ 205 (207)
..+.+.|+|||+--.........+..+|.+++|++ ......++.+.+..++..+.+.+-+++| |.|.
T Consensus 58 ~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~~g~~~qt~e~~~~~~~~~i~~~ivvvNNK~Dl 125 (370)
T 2elf_A 58 EGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP-PQGLDAHTGECIIALDLLGFKHGIIALTRSDST 125 (370)
T ss_dssp SSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-TTCCCHHHHHHHHHHHHTTCCEEEEEECCGGGS
T ss_pred CCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-CCCCcHHHHHHHHHHHHcCCCeEEEEEEeccCC
Confidence 45679999999643322223445567999999999 7666777888888888888888668888 8873
No 81
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=97.62 E-value=0.00011 Score=63.56 Aligned_cols=68 Identities=19% Similarity=0.236 Sum_probs=55.9
Q ss_pred CCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCchhhHHHHHHHHHHhhhCCCCeeEEEEccccCC
Q 028600 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPVCSFLAQIISSM 206 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~~~~~~~~~~l~~l~~~~~~~~g~v~N~~~~~ 206 (207)
++|-+-|||||+-.+...-...++..+|++|+|+++...-..++...+.++.+.+++++ +++||.|+.
T Consensus 65 ~~~~iNlIDTPGH~DF~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~~lp~i-~~INKmDr~ 132 (638)
T 3j25_A 65 ENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPTI-FFINKIDQN 132 (638)
T ss_dssp SSCBCCCEECCCSSSTHHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHHTCSCE-ECCEECCSS
T ss_pred CCEEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeE-EEEeccccc
Confidence 56788899999754433445667778999999999998878888999999999999985 789999863
No 82
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=97.61 E-value=0.0004 Score=60.85 Aligned_cols=68 Identities=18% Similarity=0.094 Sum_probs=55.9
Q ss_pred CCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCchhhHHHHHHHHHHhhhCCCCeeEEEEccccCC
Q 028600 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPVCSFLAQIISSM 206 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~~~~~~~~~~l~~l~~~~~~~~g~v~N~~~~~ 206 (207)
+.|-+=|||||+-.+...-...++..+|++|+|+++...-..++...++++.+.+++. -+++||+|+.
T Consensus 83 ~~~~iNlIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~a~~~~lp~-i~~iNKiDr~ 150 (709)
T 4fn5_A 83 DNYRVNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQANKYGVPR-IVYVNKMDRQ 150 (709)
T ss_dssp CCEEEEEECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHHTCCE-EEEEECSSST
T ss_pred CCEEEEEEeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHHHHHcCCCe-EEEEcccccc
Confidence 4577889999975443344456777899999999999888889999999999999998 4899999963
No 83
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=97.57 E-value=0.0007 Score=53.12 Aligned_cols=67 Identities=12% Similarity=0.170 Sum_probs=43.0
Q ss_pred CCCCEEEEcCCCCCCc--------chhhhhhhhcCceEEEeeCCchhhHHHHHHHHHHhhhC--CCCeeEEEEccccC
Q 028600 138 GNLDILVIDMPPGTGD--------AQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKV--QVPVCSFLAQIISS 205 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~--------~~~~~~~~~~~d~vi~v~~~~~~~~~~~~~~l~~l~~~--~~~~~g~v~N~~~~ 205 (207)
..+.++++|||+.... .......+..+|.+++|+++...--.....+++.+.+. +.++ -+|+||.|.
T Consensus 53 ~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~-ilV~NK~Dl 129 (301)
T 1wf3_A 53 GRRQIVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPI-LLVGNKLDA 129 (301)
T ss_dssp TTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCE-EEEEECGGG
T ss_pred CCcEEEEecCccccchhhHHHHHHHHHHHHHHhcCCEEEEEEECCCCCChHHHHHHHHHHhhcCCCCE-EEEEECccc
Confidence 4678899999964331 11223455679999999988643212234455666665 6666 589999884
No 84
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.57 E-value=0.00023 Score=57.17 Aligned_cols=41 Identities=17% Similarity=0.210 Sum_probs=35.3
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~ 73 (207)
+.++.|+ +..|+||||++.++|..++. .|.+|++||.....
T Consensus 61 G~i~~I~-GppGsGKSTLal~la~~~~~-~gg~VlyId~E~s~ 101 (356)
T 3hr8_A 61 GRIVEIF-GQESSGKTTLALHAIAEAQK-MGGVAAFIDAEHAL 101 (356)
T ss_dssp TEEEEEE-ESTTSSHHHHHHHHHHHHHH-TTCCEEEEESSCCC
T ss_pred CcEEEEE-CCCCCCHHHHHHHHHHHHHh-cCCeEEEEeccccc
Confidence 6777776 55999999999999999999 99999999987533
No 85
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.53 E-value=0.00087 Score=52.87 Aligned_cols=37 Identities=11% Similarity=0.068 Sum_probs=31.9
Q ss_pred EEEeCCCCCcHHHHHHHHHHHHHHhC--CCeEEEEecCCC
Q 028600 35 AVASGKGGVGKSTTAVNLAVALASKC--QLKVGLLDADVY 72 (207)
Q Consensus 35 ~v~s~kgG~GkTt~a~~LA~~la~~~--g~~VlliD~d~~ 72 (207)
....+..|+||||++.+++..+++ . |.+|++||..-.
T Consensus 31 teI~G~pGsGKTtL~Lq~~~~~~~-~g~g~~vlyId~E~s 69 (333)
T 3io5_A 31 LILAGPSKSFKSNFGLTMVSSYMR-QYPDAVCLFYDSEFG 69 (333)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHHH-HCTTCEEEEEESSCC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHh-cCCCceEEEEeccch
Confidence 455678999999999999999998 6 899999998754
No 86
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=97.50 E-value=0.00014 Score=53.35 Aligned_cols=36 Identities=17% Similarity=0.087 Sum_probs=31.4
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEe
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLD 68 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD 68 (207)
++++.+ .+.-|+||||.+..+|..+.. .|++|+++.
T Consensus 8 g~i~v~-~G~mgsGKTT~ll~~a~r~~~-~g~kV~v~k 43 (191)
T 1xx6_A 8 GWVEVI-VGPMYSGKSEELIRRIRRAKI-AKQKIQVFK 43 (191)
T ss_dssp CEEEEE-ECSTTSSHHHHHHHHHHHHHH-TTCCEEEEE
T ss_pred CEEEEE-ECCCCCcHHHHHHHHHHHHHH-CCCEEEEEE
Confidence 666666 467789999999999999999 999999996
No 87
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=97.47 E-value=0.00083 Score=48.42 Aligned_cols=67 Identities=9% Similarity=0.074 Sum_probs=41.8
Q ss_pred CCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCchh-------hHHHHHHHHHHhhh--CCCCeeEEEEccccC
Q 028600 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDV-------ALIDARKGITMFSK--VQVPVCSFLAQIISS 205 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~~-------~~~~~~~~l~~l~~--~~~~~~g~v~N~~~~ 205 (207)
..+.+.|+|+|+.-.........+..+|.+++|.+.... ++..+...+..+.. .+.++ -+|.||.|-
T Consensus 72 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~pi-ilv~NK~Dl 147 (198)
T 3t1o_A 72 FKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPI-VIQVNKRDL 147 (198)
T ss_dssp CEEEEEEEECCSCCSCSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCE-EEEEECTTS
T ss_pred CceEEEEEeCCChHHHHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCE-EEEEEchhc
Confidence 457789999997433223434455679999999999743 33333333333321 24455 588999883
No 88
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=97.46 E-value=0.00063 Score=58.34 Aligned_cols=66 Identities=12% Similarity=0.130 Sum_probs=45.4
Q ss_pred CCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCchhhHHHHHHHHHHhhhCCCCeeEEEEccccC
Q 028600 139 NLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 139 ~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~~~~~~~~~~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
.+.+.|+|||+-..........+..+|.+|+|++....-..+..+.+..+...+.++ -+++||.|.
T Consensus 69 ~~~i~liDTPGhe~F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~~vPi-IVViNKiDl 134 (594)
T 1g7s_A 69 LPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTPF-VVAANKIDR 134 (594)
T ss_dssp CCEEEEECCCTTSCCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCCE-EEEEECGGG
T ss_pred cCCEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCeE-EEEeccccc
Confidence 346999999964221122222334689999999988744455566677777888886 599999984
No 89
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.46 E-value=0.00039 Score=55.77 Aligned_cols=39 Identities=23% Similarity=0.303 Sum_probs=34.9
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~ 71 (207)
++++.++ +.+|+||||++.++|..+++ .|.+|+++|++.
T Consensus 61 G~iv~I~-G~pGsGKTtLal~la~~~~~-~g~~vlyi~~E~ 99 (349)
T 2zr9_A 61 GRVIEIY-GPESSGKTTVALHAVANAQA-AGGIAAFIDAEH 99 (349)
T ss_dssp TSEEEEE-ESTTSSHHHHHHHHHHHHHH-TTCCEEEEESSC
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHHHh-CCCeEEEEECCC
Confidence 6677775 77999999999999999999 899999999985
No 90
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=97.44 E-value=0.00086 Score=47.58 Aligned_cols=66 Identities=12% Similarity=0.163 Sum_probs=41.5
Q ss_pred CCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCchhhHHHHHHHHHHhhhCCCCeeEEEEccccC
Q 028600 139 NLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 139 ~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~~~~~~~~~~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
+..+.|+|+|+.-............+|.+++|.+.+........+.+..+...+.++ -+|+||.|-
T Consensus 54 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~l~~~~~~~~p~-ilv~nK~Dl 119 (178)
T 2lkc_A 54 DKKITFLDTPGHEAFTTMRARGAQVTDIVILVVAADDGVMPQTVEAINHAKAANVPI-IVAINKMDK 119 (178)
T ss_dssp TEEEEESCCCSSSSSSCSCCSSCCCCCEEEEEEETTCCCCHHHHHHHHHHGGGSCCE-EEEEETTTS
T ss_pred CceEEEEECCCCHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHhCCCCE-EEEEECccC
Confidence 456778888863221122223334688899998876544445555666666667775 588999874
No 91
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=97.39 E-value=0.00098 Score=51.01 Aligned_cols=64 Identities=14% Similarity=0.118 Sum_probs=43.9
Q ss_pred CCCCEEEEcCCCCCCcch----------hhhhhh--hcCceEEEeeCCchhhHHHHHHHHHHhhhCCCCeeEEEEcccc
Q 028600 138 GNLDILVIDMPPGTGDAQ----------LTTTQT--LQLSGALIVSTPQDVALIDARKGITMFSKVQVPVCSFLAQIIS 204 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~----------~~~~~~--~~~d~vi~v~~~~~~~~~~~~~~l~~l~~~~~~~~g~v~N~~~ 204 (207)
.+..+.|+|+|+..+... .....+ ..+|.+++|++... .+.......++.+.+.++ -+|+|+.|
T Consensus 46 ~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~vi~VvDas~--~~~~~~l~~~l~~~~~pv-ilv~NK~D 121 (256)
T 3iby_A 46 GEHLIEITDLPGVYSLVANAEGISQDEQIAAQSVIDLEYDCIINVIDACH--LERHLYLTSQLFELGKPV-VVALNMMD 121 (256)
T ss_dssp TTEEEEEEECCCCSSCC------CHHHHHHHHHHHHSCCSEEEEEEEGGG--HHHHHHHHHHHTTSCSCE-EEEEECHH
T ss_pred CCeEEEEEeCCCcccccccccCCCHHHHHHHHHHhhCCCCEEEEEeeCCC--chhHHHHHHHHHHcCCCE-EEEEEChh
Confidence 345789999997433211 111222 47999999999876 455566777888888887 58999986
No 92
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.38 E-value=0.0013 Score=48.25 Aligned_cols=65 Identities=12% Similarity=0.131 Sum_probs=42.6
Q ss_pred CCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCch-hhHHHH-HHHHHHhhhC--CCCeeEEEEcccc
Q 028600 139 NLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDA-RKGITMFSKV--QVPVCSFLAQIIS 204 (207)
Q Consensus 139 ~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~-~~~~~~-~~~l~~l~~~--~~~~~g~v~N~~~ 204 (207)
.+.+.|+|+|+.-.........+..+|.+++|.+.+. .++..+ ...+..+.+. +.++ -+|+||.|
T Consensus 72 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi-ilv~nK~D 140 (207)
T 2fv8_A 72 QVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPI-ILVANKKD 140 (207)
T ss_dssp EEEEEEEECTTCTTCTTTGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCE-EEEEECGG
T ss_pred EEEEEEEECCCcHHHHHHHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCE-EEEEEchh
Confidence 4788999999643322333344557899999987654 355665 4455555543 5665 58999987
No 93
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.36 E-value=0.00026 Score=54.29 Aligned_cols=39 Identities=38% Similarity=0.466 Sum_probs=33.7
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~ 71 (207)
++.|.++ +-+|+||||++..|+..+.. .|..++++|.|.
T Consensus 4 ~~lIvl~-G~pGSGKSTla~~La~~L~~-~g~~~i~~~~D~ 42 (260)
T 3a4m_A 4 IMLIILT-GLPGVGKSTFSKNLAKILSK-NNIDVIVLGSDL 42 (260)
T ss_dssp CEEEEEE-CCTTSSHHHHHHHHHHHHHH-TTCCEEEECTHH
T ss_pred CEEEEEE-cCCCCCHHHHHHHHHHHHHh-CCCEEEEECchH
Confidence 6677775 66999999999999999998 899998888764
No 94
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=97.34 E-value=0.00035 Score=51.96 Aligned_cols=39 Identities=23% Similarity=0.230 Sum_probs=32.7
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~ 72 (207)
...|+++ +.+|+||||+..+|+..+.. . .++.+|+.|+.
T Consensus 38 ~~~i~iv-G~~gvGKTtl~~~l~~~~~~-~-~~~~~i~~d~~ 76 (226)
T 2hf9_A 38 VVAFDFM-GAIGSGKTLLIEKLIDNLKD-K-YKIACIAGDVI 76 (226)
T ss_dssp CEEEEEE-ESTTSSHHHHHHHHHHHHTT-T-CCEEEEEEETT
T ss_pred CeEEEEE-cCCCCCHHHHHHHHHHHhcc-C-CeEEEEECCCC
Confidence 5677776 56999999999999998766 4 88999998875
No 95
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.33 E-value=0.00041 Score=50.15 Aligned_cols=40 Identities=35% Similarity=0.366 Sum_probs=35.0
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCC
Q 028600 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (207)
Q Consensus 30 ~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~ 71 (207)
.+++|.++ +..|+||||++..||..+.. .|.++.++|.|.
T Consensus 12 ~~~~i~l~-G~~GsGKsT~~~~L~~~l~~-~~~~~~~~~~d~ 51 (186)
T 2yvu_A 12 KGIVVWLT-GLPGSGKTTIATRLADLLQK-EGYRVEVLDGDW 51 (186)
T ss_dssp CCEEEEEE-CCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHH
T ss_pred CCcEEEEE-cCCCCCHHHHHHHHHHHHHh-cCCeEEEeeHHH
Confidence 36777774 88999999999999999999 899999998774
No 96
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=97.31 E-value=0.0023 Score=45.62 Aligned_cols=66 Identities=12% Similarity=0.079 Sum_probs=42.6
Q ss_pred CCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCch-hhHHHHHHHHHHhhh----CCCCeeEEEEcccc
Q 028600 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDARKGITMFSK----VQVPVCSFLAQIIS 204 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~-~~~~~~~~~l~~l~~----~~~~~~g~v~N~~~ 204 (207)
..+.+.|+|+|+...........+..+|.+++|.+... .+...+...+..+.+ .+.++ -+|+|+.|
T Consensus 64 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi-ilv~nK~D 134 (187)
T 2a9k_A 64 EEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPF-LLVGNKSD 134 (187)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCE-EEEEECGG
T ss_pred EEEEEEEEECCCCcccHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCE-EEEEECcc
Confidence 34688999999744333333444557899999988764 345555555444443 25565 58999987
No 97
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=97.28 E-value=0.0013 Score=47.47 Aligned_cols=65 Identities=12% Similarity=0.057 Sum_probs=44.3
Q ss_pred CCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCchh-hHHHHHHHHHHhhhCCCCeeEEEEcccc
Q 028600 140 LDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDV-ALIDARKGITMFSKVQVPVCSFLAQIIS 204 (207)
Q Consensus 140 ~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~~-~~~~~~~~l~~l~~~~~~~~g~v~N~~~ 204 (207)
+.+.|+|+|+.-.........+..+|.+++|.+.... +...+...+..+.+.....+-+|+||.|
T Consensus 93 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~piilv~NK~D 158 (208)
T 3clv_A 93 IKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSNYIIILVANKID 158 (208)
T ss_dssp EEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCCEEEEEEECTT
T ss_pred eEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCC
Confidence 8899999996422223334555689999999987654 5566666666666532244569999988
No 98
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=97.28 E-value=0.0027 Score=45.63 Aligned_cols=67 Identities=10% Similarity=0.049 Sum_probs=39.1
Q ss_pred CCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCch-hhHHHHHHHHHHhhh----CCCCeeEEEEccccC
Q 028600 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDARKGITMFSK----VQVPVCSFLAQIISS 205 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~-~~~~~~~~~l~~l~~----~~~~~~g~v~N~~~~ 205 (207)
..+++.|+|+|+...........+..+|.+++|.+... .+...+...++.+.. .+.++ -+|+|+.|.
T Consensus 67 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~-ilv~nK~Dl 138 (190)
T 3con_A 67 ETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPM-VLVGNKCDL 138 (190)
T ss_dssp EEEEEEEEECCC-----------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCE-EEEEECTTC
T ss_pred EEEEEEEEECCChHHHHHHHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeE-EEEEECCcC
Confidence 45789999999743222222334457899888887654 355666555555543 25565 599999983
No 99
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.26 E-value=0.0025 Score=46.63 Aligned_cols=66 Identities=9% Similarity=0.096 Sum_probs=42.8
Q ss_pred CCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCch-hhHHHHHHHHHHhhhC---CCCeeEEEEccccC
Q 028600 139 NLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDARKGITMFSKV---QVPVCSFLAQIISS 205 (207)
Q Consensus 139 ~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~-~~~~~~~~~l~~l~~~---~~~~~g~v~N~~~~ 205 (207)
.+.+.|+|+|+.-.........+..+|.+++|++... .+...+...+..+.+. +.++ -+|+|+.|-
T Consensus 68 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pi-ilv~nK~Dl 137 (213)
T 3cph_A 68 KVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQL-LLVGNKSDM 137 (213)
T ss_dssp EEEEEEECCTTGGGGTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEE-EEEEECTTC
T ss_pred EEEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCE-EEEEECCCC
Confidence 4678999999632222223445567999999998764 3555556666555543 3444 689999873
No 100
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=97.26 E-value=0.0024 Score=45.96 Aligned_cols=67 Identities=6% Similarity=0.012 Sum_probs=38.7
Q ss_pred CCCCEEEEcCCCCCCcchhhhhhhh----cCceEEEeeCCc--hhhHHHHHHHHHHhhh-------CCCCeeEEEEcccc
Q 028600 138 GNLDILVIDMPPGTGDAQLTTTQTL----QLSGALIVSTPQ--DVALIDARKGITMFSK-------VQVPVCSFLAQIIS 204 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~~~~~~~~----~~d~vi~v~~~~--~~~~~~~~~~l~~l~~-------~~~~~~g~v~N~~~ 204 (207)
..+.+.++|+|+...........+. .+|.+++|++.. ..+...+...+..+.. .+.++ -+|+|+.|
T Consensus 89 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-ilv~nK~D 167 (193)
T 2ged_A 89 DGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDI-LIACNKSE 167 (193)
T ss_dssp CCTTCSEEEETTCCBSSCCHHHHHHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCE-EEEEECTT
T ss_pred cCCeEEEEECCCCchHHHHHHHHHHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCE-EEEEEchH
Confidence 3577889999963221111112222 379999998886 4455555444433321 35565 58999988
Q ss_pred C
Q 028600 205 S 205 (207)
Q Consensus 205 ~ 205 (207)
-
T Consensus 168 l 168 (193)
T 2ged_A 168 L 168 (193)
T ss_dssp S
T ss_pred h
Confidence 3
No 101
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=97.25 E-value=0.0013 Score=46.00 Aligned_cols=66 Identities=9% Similarity=0.106 Sum_probs=42.8
Q ss_pred CCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCchh-hHHHHHHHHHHhhhC--CCCeeEEEEcccc
Q 028600 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDV-ALIDARKGITMFSKV--QVPVCSFLAQIIS 204 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~~-~~~~~~~~l~~l~~~--~~~~~g~v~N~~~ 204 (207)
..+.+.|+|+|+...........+..+|.+++|.+.... +...+...+..+... +.++ -+|+|+.|
T Consensus 52 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~pi-ilv~nK~D 120 (168)
T 1z2a_A 52 EDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPT-ALVQNKID 120 (168)
T ss_dssp EEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCCE-EEEEECGG
T ss_pred EEEEEEEEcCCCcHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCE-EEEEECcc
Confidence 357889999996322122334455579999999887643 456665555555432 5555 58999987
No 102
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=97.24 E-value=0.0016 Score=46.75 Aligned_cols=39 Identities=3% Similarity=0.052 Sum_probs=22.5
Q ss_pred ceEEEeeCCchhhHHHHHHHHHHhhhCCCCeeEEEEcccc
Q 028600 165 SGALIVSTPQDVALIDARKGITMFSKVQVPVCSFLAQIIS 204 (207)
Q Consensus 165 d~vi~v~~~~~~~~~~~~~~l~~l~~~~~~~~g~v~N~~~ 204 (207)
|.+++|++............++++...+.++ -+|+||.|
T Consensus 106 ~~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~-i~v~nK~D 144 (195)
T 3pqc_A 106 QMVFLLVDGRIPPQDSDLMMVEWMKSLNIPF-TIVLTKMD 144 (195)
T ss_dssp EEEEEEEETTSCCCHHHHHHHHHHHHTTCCE-EEEEECGG
T ss_pred eEEEEEecCCCCCCHHHHHHHHHHHHcCCCE-EEEEEChh
Confidence 6677777655433333334555566656665 46777776
No 103
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=97.24 E-value=0.00025 Score=57.93 Aligned_cols=67 Identities=13% Similarity=0.112 Sum_probs=48.5
Q ss_pred CCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCchhh-HHHHHHHHHHhhhCCCCeeEEEEccccC
Q 028600 139 NLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVA-LIDARKGITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 139 ~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~~~-~~~~~~~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
.+.+.|+|+|+--.........+..+|.+++|+++.... ..++.+.+..++..+.+.+-+++||.|.
T Consensus 74 ~~~~~iiDtPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl 141 (403)
T 3sjy_A 74 LRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDV 141 (403)
T ss_dssp EEEEEEEECCCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGG
T ss_pred cceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCCCCEEEEEECccc
Confidence 368999999963222223344555799999999988754 7777778888877777555689999884
No 104
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=97.23 E-value=0.0006 Score=59.31 Aligned_cols=67 Identities=9% Similarity=0.127 Sum_probs=48.3
Q ss_pred CCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCchhhHHHHHHHHHHhhhCCCCeeEEEEccccC
Q 028600 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~~~~~~~~~~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
..+.+.|+|+|+...........+..+|.+++|+++...-.......+..+.+.+.+++ +++|+.|.
T Consensus 72 ~~~~~nliDTpG~~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~~~~~~~~~~~ip~i-lv~NKiD~ 138 (665)
T 2dy1_A 72 RGHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPRM-VVVTKLDK 138 (665)
T ss_dssp TTEEEEEEECCCSGGGHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEE-EEEECGGG
T ss_pred CCEEEEEEeCCCccchHHHHHHHHhhcCcEEEEEcCCcccchhHHHHHHHHHHccCCEE-EEecCCch
Confidence 35778899999643322333555667999999999876555666677788888888875 78999874
No 105
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=97.22 E-value=0.0035 Score=52.41 Aligned_cols=68 Identities=9% Similarity=0.020 Sum_probs=47.3
Q ss_pred CCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCchhh-------HHHHHHHHHHhhhCCCCeeEEEEccccC
Q 028600 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVA-------LIDARKGITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~~~-------~~~~~~~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
..+.+.|+|+|+--.........+..+|.+++|++++... .....+.+..+...+.+.+-+++||.|.
T Consensus 109 ~~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvviNK~Dl 183 (483)
T 3p26_A 109 HRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDN 183 (483)
T ss_dssp SSCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEEECGGG
T ss_pred CCceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEEECcCc
Confidence 5788999999964222223344556799999999987642 2456666777777777755689999883
No 106
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=97.18 E-value=0.0042 Score=45.09 Aligned_cols=67 Identities=12% Similarity=0.067 Sum_probs=43.2
Q ss_pred CCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCch-hhHHHHHHHHHHhhh----CCCCeeEEEEccccC
Q 028600 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDARKGITMFSK----VQVPVCSFLAQIISS 205 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~-~~~~~~~~~l~~l~~----~~~~~~g~v~N~~~~ 205 (207)
..+.+.|+|+|+...........+..+|.+++|.+... .+...+...+..+.+ .+.++ -+|+|+.|-
T Consensus 60 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi-ilv~nK~Dl 131 (206)
T 2bov_A 60 EEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPF-LLVGNKSDL 131 (206)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCE-EEEEECTTC
T ss_pred EEEEEEEEcCCChhhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCE-EEEEeccCc
Confidence 34688999999754333333444557899999887654 455566555555543 25565 589999873
No 107
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=97.18 E-value=0.00051 Score=51.08 Aligned_cols=37 Identities=11% Similarity=0.008 Sum_probs=31.5
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEec
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDA 69 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~ 69 (207)
++++.+ .+.-|.||||.+..+|.-+.. .|++|+++..
T Consensus 28 G~l~vi-tG~MgsGKTT~lL~~a~r~~~-~g~kVli~k~ 64 (214)
T 2j9r_A 28 GWIEVI-CGSMFSGKSEELIRRVRRTQF-AKQHAIVFKP 64 (214)
T ss_dssp CEEEEE-ECSTTSCHHHHHHHHHHHHHH-TTCCEEEEEC
T ss_pred CEEEEE-ECCCCCcHHHHHHHHHHHHHH-CCCEEEEEEe
Confidence 566555 466689999999999999999 9999999953
No 108
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.18 E-value=0.0009 Score=48.18 Aligned_cols=42 Identities=26% Similarity=0.336 Sum_probs=35.9
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCC
Q 028600 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (207)
Q Consensus 30 ~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~ 73 (207)
++++++|++ ..|+||||+...|...+.. .|.+|..+..++..
T Consensus 5 ~~~~i~i~G-~sGsGKTTl~~~l~~~l~~-~g~~v~~i~~~~~~ 46 (174)
T 1np6_A 5 MIPLLAFAA-WSGTGKTTLLKKLIPALCA-RGIRPGLIKHTHHD 46 (174)
T ss_dssp CCCEEEEEC-CTTSCHHHHHHHHHHHHHH-TTCCEEEEEECCC-
T ss_pred cceEEEEEe-CCCCCHHHHHHHHHHhccc-cCCceeEEeeCCCc
Confidence 367888865 7899999999999999998 99999999988754
No 109
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=97.16 E-value=0.0006 Score=56.58 Aligned_cols=67 Identities=10% Similarity=0.034 Sum_probs=41.0
Q ss_pred CCCCEEEEcCCCCCC-----c---chhhhhhhhcCceEEEeeCCchhhHHHHHHHHHHhhhCCCCeeEEEEccccC
Q 028600 138 GNLDILVIDMPPGTG-----D---AQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~-----~---~~~~~~~~~~~d~vi~v~~~~~~~~~~~~~~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
....+.|+|||+-.. . .......+..+|.+++|++....-...-..+.+.+.+.+.++ -+|+||.|.
T Consensus 69 ~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~~~~pv-ilV~NK~D~ 143 (456)
T 4dcu_A 69 LNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPV-VLAVNKLDN 143 (456)
T ss_dssp CSSCCEEECCCC------CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTTCCSCE-EEEEECC--
T ss_pred CCceEEEEECCCCCCcchHHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHHcCCCE-EEEEECccc
Confidence 456788999986211 0 012233445689999998876533333456667777777776 488899874
No 110
>2c5m_A CTP synthase; cytidine 5-prime triphosphate synthetase, CTP synthetase, UTP, glutamine, amidotransferase, ligase, phosphorylation; 2.80A {Homo sapiens} PDB: 2vo1_A 3ihl_A*
Probab=97.15 E-value=0.007 Score=45.80 Aligned_cols=42 Identities=33% Similarity=0.499 Sum_probs=38.8
Q ss_pred CeEEEEEeCC-CCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCC
Q 028600 31 KDVIAVASGK-GGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (207)
Q Consensus 31 ~k~I~v~s~k-gG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~ 73 (207)
+|-|.|+++. .|.||-.+|+.++..|.. +|.+|..+-+||+-
T Consensus 23 mKyIfVTGGVvSglGKGi~aaSlG~LLk~-rG~~Vt~~KiDPYl 65 (294)
T 2c5m_A 23 MKYILVTGGVISGIGKGIIASSVGTILKS-CGLHVTSIKIDPYI 65 (294)
T ss_dssp CEEEEEEECSSTTSCHHHHHHHHHHHHHT-TTCCEECCEEECBC
T ss_pred eEEEEEcCccccccchHHHHHHHHHHHHH-CCCeeEEEecCCce
Confidence 7888888887 999999999999999999 99999999999954
No 111
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=97.12 E-value=0.00053 Score=47.78 Aligned_cols=66 Identities=9% Similarity=0.002 Sum_probs=38.9
Q ss_pred CCCEEEEcCCCCCCc-------chhhhhhhhcCceEEEeeCCchhhHHHHHHHHHHhhhCCCCeeEEEEccccC
Q 028600 139 NLDILVIDMPPGTGD-------AQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 139 ~~D~IiiD~~~~~~~-------~~~~~~~~~~~d~vi~v~~~~~~~~~~~~~~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
...+.|+|+|+.... .......+..+|.+++|.+....-........+.+.+.+.++ -+|.||.|.
T Consensus 48 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~-ilv~nK~Dl 120 (161)
T 2dyk_A 48 RGRFLLVDTGGLWSGDKWEKKIQEKVDRALEDAEVVLFAVDGRAELTQADYEVAEYLRRKGKPV-ILVATKVDD 120 (161)
T ss_dssp TEEEEEEECGGGCSSSSCCHHHHHHHHHHTTTCSEEEEEEESSSCCCHHHHHHHHHHHHHTCCE-EEEEECCCS
T ss_pred CceEEEEECCCCCCccchHHHHHHHHHHHHHhCCEEEEEEECCCcccHhHHHHHHHHHhcCCCE-EEEEECccc
Confidence 346788888864321 111123345788999888876532222234455555566675 588999874
No 112
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=97.11 E-value=0.0016 Score=55.91 Aligned_cols=67 Identities=10% Similarity=0.042 Sum_probs=46.1
Q ss_pred CCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCchhhHHHHHHHHHHhhhCCCCeeEEEEccccC
Q 028600 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~~~~~~~~~~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
..|.+.|+|||+-.+........+..+|.+++|+++......+....+......+.++ -+++||.|.
T Consensus 71 ~~~~inliDTPGh~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~~ipi-IvviNKiDl 137 (600)
T 2ywe_A 71 NTYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVEQDLVI-IPVINKIDL 137 (600)
T ss_dssp CEEEEEEECCCCSGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHHTTCEE-EEEEECTTS
T ss_pred CeEEEEEEECCCcHhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHHCCCCE-EEEEeccCc
Confidence 4588899999964332222344566899999999987654444555555556677885 589999984
No 113
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=97.04 E-value=0.0011 Score=56.16 Aligned_cols=66 Identities=14% Similarity=0.167 Sum_probs=48.0
Q ss_pred CCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCchhhHHHHHHHHHHhhhCCCCeeEEEEccccC
Q 028600 139 NLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 139 ~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~~~~~~~~~~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
.+.+.|+|||+--.........+..+|.+++|++++........+.+..+...+.++ -+++||.|.
T Consensus 51 g~~i~~iDTPGhe~f~~~~~~~~~~aD~vILVVDa~dg~~~qt~e~l~~~~~~~vPi-IVViNKiDl 116 (537)
T 3izy_P 51 GEKITFLDTPGHAAFSAMRARGTQVTDIVILVVAADDGVMKQTVESIQHAKDAHVPI-VLAINKCDK 116 (537)
T ss_dssp SSCCBCEECSSSCCTTTSBBSSSBSBSSCEEECBSSSCCCHHHHHHHHHHHTTTCCE-EECCBSGGG
T ss_pred CCEEEEEECCChHHHHHHHHHHHccCCEEEEEEECCCCccHHHHHHHHHHHHcCCcE-EEEEecccc
Confidence 345788999963221122223344689999999998877778888888888888886 588999984
No 114
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=97.03 E-value=0.00039 Score=54.28 Aligned_cols=42 Identities=21% Similarity=0.355 Sum_probs=33.6
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCC
Q 028600 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (207)
Q Consensus 30 ~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~ 73 (207)
...+|+++ +-.|+||||++..|+..+.. .|.++.+||+|-..
T Consensus 4 ~~~iIgIt-G~sGSGKSTva~~L~~~lg~-~~~~~~vI~~D~~~ 45 (290)
T 1a7j_A 4 KHPIISVT-GSSGAGTSTVKHTFDQIFRR-EGVKAVSIEGDAFH 45 (290)
T ss_dssp TSCEEEEE-SCC---CCTHHHHHHHHHHH-HTCCEEEEEGGGGB
T ss_pred CceEEEEE-CCCCCCHHHHHHHHHHHHhh-cCCCeeEeecchhh
Confidence 36688885 78899999999999999987 78899999999755
No 115
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.00 E-value=0.0036 Score=45.18 Aligned_cols=67 Identities=7% Similarity=0.063 Sum_probs=41.8
Q ss_pred CCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCch-hhHHHHHHHHHHhhh-----CCCCeeEEEEccccC
Q 028600 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDARKGITMFSK-----VQVPVCSFLAQIISS 205 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~-~~~~~~~~~l~~l~~-----~~~~~~g~v~N~~~~ 205 (207)
..+.+.|+|+|+.-.........+..+|.+++|.+.+. .+...+...++.+.+ .+.++ -+|+|+.|-
T Consensus 54 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~pi-ilv~nK~Dl 126 (199)
T 2gf0_A 54 SVCTLQITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPV-MLVGNKCDE 126 (199)
T ss_dssp EEEEEEEEECCGGGSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCE-EEEEECTTC
T ss_pred EEEEEEEEeCCChHHhHHHHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCE-EEEEECccC
Confidence 45678999999643322333344557899999988764 355555555444443 24555 689999883
No 116
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.97 E-value=0.00089 Score=48.31 Aligned_cols=38 Identities=24% Similarity=0.307 Sum_probs=32.0
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d 70 (207)
|+.|.+ .+-.|+||||++..|+..+.. .|.++..++.|
T Consensus 1 M~~I~i-~G~~GsGKsT~~~~L~~~l~~-~g~~~~~~~~~ 38 (194)
T 1nks_A 1 MKIGIV-TGIPGVGKSTVLAKVKEILDN-QGINNKIINYG 38 (194)
T ss_dssp CEEEEE-EECTTSCHHHHHHHHHHHHHT-TTCCEEEEEHH
T ss_pred CeEEEE-ECCCCCCHHHHHHHHHHHHHh-cCceEEEEECC
Confidence 356777 467899999999999999998 89999999754
No 117
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.92 E-value=0.0013 Score=51.87 Aligned_cols=40 Identities=15% Similarity=0.264 Sum_probs=34.8
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~ 72 (207)
+.++.+ .+.+|+||||++.++|..++. .|.+|+++.+...
T Consensus 68 G~l~li-~G~pG~GKTtl~l~ia~~~a~-~g~~vl~~slE~s 107 (315)
T 3bh0_A 68 RNFVLI-AARPSMGKTAFALKQAKNMSD-NDDVVNLHSLEMG 107 (315)
T ss_dssp TCEEEE-ECCTTSSHHHHHHHHHHHHHT-TTCEEEEEESSSC
T ss_pred CcEEEE-EeCCCCCHHHHHHHHHHHHHH-cCCeEEEEECCCC
Confidence 445555 699999999999999999999 8999999998854
No 118
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.91 E-value=0.0018 Score=47.48 Aligned_cols=42 Identities=24% Similarity=0.228 Sum_probs=36.0
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCC
Q 028600 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (207)
Q Consensus 30 ~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~ 73 (207)
.+.+|+++ +..|+||||++..|+..+.. .|.+|.+++.|...
T Consensus 21 ~~~~i~i~-G~~GsGKstl~~~l~~~~~~-~~~~v~~~~~d~~~ 62 (201)
T 1rz3_A 21 GRLVLGID-GLSRSGKTTLANQLSQTLRE-QGISVCVFHMDDHI 62 (201)
T ss_dssp SSEEEEEE-ECTTSSHHHHHHHHHHHHHH-TTCCEEEEEGGGGC
T ss_pred CCeEEEEE-CCCCCCHHHHHHHHHHHHhh-cCCeEEEeccCccc
Confidence 36788885 77899999999999999988 88899999888654
No 119
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.90 E-value=0.0013 Score=49.36 Aligned_cols=40 Identities=15% Similarity=0.100 Sum_probs=35.0
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~ 72 (207)
+.++.+ .+.+|+||||++.++|..++. .|.+|++++.+..
T Consensus 23 G~~~~i-~G~~GsGKTtl~~~~~~~~~~-~~~~v~~~~~e~~ 62 (247)
T 2dr3_A 23 RNVVLL-SGGPGTGKTIFSQQFLWNGLK-MGEPGIYVALEEH 62 (247)
T ss_dssp TCEEEE-EECTTSSHHHHHHHHHHHHHH-TTCCEEEEESSSC
T ss_pred CcEEEE-ECCCCCCHHHHHHHHHHHHHh-cCCeEEEEEccCC
Confidence 567777 477999999999999999999 8999999998864
No 120
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=96.90 E-value=0.0022 Score=56.08 Aligned_cols=65 Identities=15% Similarity=0.102 Sum_probs=42.0
Q ss_pred CCEEEEcCCCCCC---cchhhhhhhhcCceEEEeeCCchh-hHHHHHHHHHHhhhCCCCeeEEEEccccC
Q 028600 140 LDILVIDMPPGTG---DAQLTTTQTLQLSGALIVSTPQDV-ALIDARKGITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 140 ~D~IiiD~~~~~~---~~~~~~~~~~~~d~vi~v~~~~~~-~~~~~~~~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
++++|+|||+... ........+..+|.+++|++++.. +........+.+...+.+ +-+|+||+|.
T Consensus 174 ~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~~~~~-iiiVlNK~Dl 242 (695)
T 2j69_A 174 KGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKGRGLT-VFFLVNAWDQ 242 (695)
T ss_dssp TTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTTSCCC-EEEEEECGGG
T ss_pred CCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHhhCCC-EEEEEECccc
Confidence 6899999996211 112334556679999999998653 333333333455556666 4699999883
No 121
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=96.88 E-value=0.0027 Score=49.70 Aligned_cols=21 Identities=43% Similarity=0.551 Sum_probs=17.1
Q ss_pred eEEEEEeCCCCCcHHHHHHHHH
Q 028600 32 DVIAVASGKGGVGKSTTAVNLA 53 (207)
Q Consensus 32 k~I~v~s~kgG~GkTt~a~~LA 53 (207)
..|++. +.+|+||||+.-.|.
T Consensus 9 ~~VaIv-G~~nvGKSTLln~L~ 29 (301)
T 1ega_A 9 GFIAIV-GRPNVGKSTLLNKLL 29 (301)
T ss_dssp EEEEEE-CSSSSSHHHHHHHHH
T ss_pred CEEEEE-CCCCCCHHHHHHHHH
Confidence 457775 889999999988775
No 122
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=96.87 E-value=0.0072 Score=42.88 Aligned_cols=66 Identities=12% Similarity=0.189 Sum_probs=40.1
Q ss_pred CCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCch-hhHHHHHHHHHHhh----hCCCCeeEEEEcccc
Q 028600 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDARKGITMFS----KVQVPVCSFLAQIIS 204 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~-~~~~~~~~~l~~l~----~~~~~~~g~v~N~~~ 204 (207)
..+.+.|+|+|+.-............+|.+++|.+... .+...+...+..+. ..+.++ -+|.|+.|
T Consensus 52 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~-ilv~nK~D 122 (181)
T 3t5g_A 52 QEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPI-MLVGNKKD 122 (181)
T ss_dssp EEEEEEEEECCCCCTTCCCCGGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCE-EEEEECTT
T ss_pred EEEEEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCE-EEEEECcc
Confidence 34678999999643222222334447899998887754 45555555554443 235565 58899988
No 123
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=96.86 E-value=0.0025 Score=58.42 Aligned_cols=68 Identities=19% Similarity=0.204 Sum_probs=46.8
Q ss_pred CCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCchhhHHHHHHHHHHhhhCCCCeeEEEEccccC
Q 028600 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~~~~~~~~~~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
..+.+.|+|||+--.........+..+|.+|+|++.......++.+.+..+...+++.+-+++||.|.
T Consensus 357 ~~~kI~IIDTPGHedF~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~lgIP~IIVVINKiDL 424 (1289)
T 3avx_A 357 PTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDM 424 (1289)
T ss_dssp SSCEEEEEECCCHHHHHHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHHTCSCEEEEEECCTT
T ss_pred CCEEEEEEECCChHHHHHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHcCCCeEEEEEeeccc
Confidence 56889999999522111122333446899999999876545556666677777788865688999984
No 124
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=96.85 E-value=0.0027 Score=53.31 Aligned_cols=66 Identities=18% Similarity=0.171 Sum_probs=44.6
Q ss_pred CCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCchhhHHHHHHHHHHhhhCCCCeeEEEEccccC
Q 028600 139 NLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 139 ~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~~~~~~~~~~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
++.+.|+|||+--.........+..+|.+++|++.+.....++.+.+..+...+.++ -+++||.|.
T Consensus 50 ~~~i~~iDTPGhe~f~~~~~~~~~~aD~aILVVda~~g~~~qT~e~l~~~~~~~vPi-IVviNKiDl 115 (501)
T 1zo1_I 50 NGMITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVPV-VVAVNKIDK 115 (501)
T ss_dssp SSCCCEECCCTTTCCTTSBCSSSBSCSSEEEEEETTTBSCTTTHHHHHHHHHTTCCE-EEEEECSSS
T ss_pred CEEEEEEECCCcHHHHHHHHHHHhhCCEEEEEeecccCccHHHHHHHHHHHhcCceE-EEEEEeccc
Confidence 456789999963221122223344689999999877654555666667777788885 599999984
No 125
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=96.81 E-value=0.0058 Score=50.39 Aligned_cols=65 Identities=11% Similarity=0.025 Sum_probs=34.2
Q ss_pred CCEEEEcCCCCCCc---------chhhhhhhhcCceEEEeeCCchhhHHHHHHHHHHhhhCCCCeeEEEEccccC
Q 028600 140 LDILVIDMPPGTGD---------AQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 140 ~D~IiiD~~~~~~~---------~~~~~~~~~~~d~vi~v~~~~~~~~~~~~~~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
..+.|+|||+.... .......+..+|.+++|++....-...-..+.+.+++.+.++ -+|+||.|.
T Consensus 49 ~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~~~~p~-ilv~NK~D~ 122 (439)
T 1mky_A 49 KTFKLVDTCGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKEDESLADFLRKSTVDT-ILVANKAEN 122 (439)
T ss_dssp EEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHHHHHHHHHHHHTCCE-EEEEESCCS
T ss_pred eEEEEEECCCccccccchHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCE-EEEEeCCCC
Confidence 35677787753211 011233455678888887764321111123344455556665 477888764
No 126
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=96.77 E-value=0.0054 Score=44.12 Aligned_cols=22 Identities=41% Similarity=0.483 Sum_probs=16.6
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHH
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLA 53 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA 53 (207)
...|+++ +..|+||||+...|.
T Consensus 23 ~~~i~v~-G~~~~GKSsli~~l~ 44 (195)
T 1svi_A 23 LPEIALA-GRSNVGKSSFINSLI 44 (195)
T ss_dssp CCEEEEE-EBTTSSHHHHHHHHH
T ss_pred CCEEEEE-CCCCCCHHHHHHHHh
Confidence 3456664 688999999988775
No 127
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.75 E-value=0.002 Score=51.29 Aligned_cols=41 Identities=10% Similarity=0.289 Sum_probs=35.6
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~ 73 (207)
+..+.+ .+.+|+||||++.++|..++. .|.+|+++.+....
T Consensus 46 G~LiiI-aG~pG~GKTt~al~ia~~~a~-~g~~Vl~fSlEms~ 86 (338)
T 4a1f_A 46 GSLVII-GARPSMGKTSLMMNMVLSALN-DDRGVAVFSLEMSA 86 (338)
T ss_dssp TCEEEE-EECTTSCHHHHHHHHHHHHHH-TTCEEEEEESSSCH
T ss_pred CcEEEE-EeCCCCCHHHHHHHHHHHHHH-cCCeEEEEeCCCCH
Confidence 445555 789999999999999999999 99999999988654
No 128
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.74 E-value=0.002 Score=47.52 Aligned_cols=36 Identities=25% Similarity=0.251 Sum_probs=31.1
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~ 71 (207)
+.++.+ .+.+|+||||++.++|. . .|.+|++++.+.
T Consensus 20 G~~~~i-~G~~GsGKTtl~~~l~~---~-~~~~v~~i~~~~ 55 (220)
T 2cvh_A 20 GVLTQV-YGPYASGKTTLALQTGL---L-SGKKVAYVDTEG 55 (220)
T ss_dssp TSEEEE-ECSTTSSHHHHHHHHHH---H-HCSEEEEEESSC
T ss_pred CEEEEE-ECCCCCCHHHHHHHHHH---H-cCCcEEEEECCC
Confidence 556666 68999999999999998 5 689999999886
No 129
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.73 E-value=0.0029 Score=45.31 Aligned_cols=41 Identities=24% Similarity=0.279 Sum_probs=35.0
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~ 73 (207)
+..|+++ +..|+||||++..|+..+.. .|.++..+|.|.-.
T Consensus 5 g~~i~l~-G~~GsGKST~~~~L~~~l~~-~g~~~i~~d~~~~~ 45 (179)
T 2pez_A 5 GCTVWLT-GLSGAGKTTVSMALEEYLVC-HGIPCYTLDGDNIR 45 (179)
T ss_dssp CEEEEEE-CCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHHT
T ss_pred CcEEEEE-CCCCCCHHHHHHHHHHHHhh-CCCcEEEECChHHH
Confidence 6788885 78899999999999999988 89999988876543
No 130
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.72 E-value=0.0015 Score=49.73 Aligned_cols=43 Identities=28% Similarity=0.322 Sum_probs=33.7
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHh----CCCeEEEEecCCCC
Q 028600 30 VKDVIAVASGKGGVGKSTTAVNLAVALASK----CQLKVGLLDADVYG 73 (207)
Q Consensus 30 ~~k~I~v~s~kgG~GkTt~a~~LA~~la~~----~g~~VlliD~d~~~ 73 (207)
.+.+|++ .+..|+||||++..||..+... .+++|+++|+|-..
T Consensus 21 ~~~iI~I-~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~ 67 (252)
T 1uj2_A 21 EPFLIGV-SGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFY 67 (252)
T ss_dssp CCEEEEE-ECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGB
T ss_pred CcEEEEE-ECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccc
Confidence 3667888 5888999999999999977641 26789999998543
No 131
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=96.70 E-value=0.0023 Score=48.13 Aligned_cols=42 Identities=17% Similarity=0.158 Sum_probs=33.5
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~ 73 (207)
+.++.+ .+.+|+|||+++.++|...+...|.+|+++.++...
T Consensus 30 G~l~~i-~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E~~~ 71 (251)
T 2zts_A 30 GTTVLL-TGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERA 71 (251)
T ss_dssp TCEEEE-ECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCH
T ss_pred CeEEEE-EeCCCCCHHHHHHHHHHHHHHhcCCCceeecccCCH
Confidence 455555 688999999999999987655368999999988643
No 132
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.70 E-value=0.0019 Score=53.50 Aligned_cols=42 Identities=14% Similarity=0.238 Sum_probs=35.9
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGP 74 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~ 74 (207)
+..+.+ .+.+|+||||++.++|...+. .|.+|+++.+.....
T Consensus 197 G~liiI-aG~pG~GKTtlal~ia~~~a~-~g~~vl~fSlEms~~ 238 (444)
T 3bgw_A 197 RNFVLI-AARPSMGKTAFALKQAKNMSD-NDDVVNLHSLEMGKK 238 (444)
T ss_dssp SCEEEE-EECSSSSHHHHHHHHHHHHHH-TTCEEEEECSSSCTT
T ss_pred CcEEEE-EeCCCCChHHHHHHHHHHHHH-cCCEEEEEECCCCHH
Confidence 445555 688999999999999999999 799999999886553
No 133
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.69 E-value=0.003 Score=46.18 Aligned_cols=43 Identities=35% Similarity=0.238 Sum_probs=36.0
Q ss_pred CCCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCC
Q 028600 29 GVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (207)
Q Consensus 29 ~~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~ 73 (207)
..+.+|+++ +..|+||||++..||..+.. .|..+..+|.|...
T Consensus 23 ~~g~~i~l~-G~sGsGKSTl~~~La~~l~~-~G~~~~~~d~d~~~ 65 (200)
T 3uie_A 23 QKGCVIWVT-GLSGSGKSTLACALNQMLYQ-KGKLCYILDGDNVR 65 (200)
T ss_dssp SCCEEEEEE-CSTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHHT
T ss_pred CCCeEEEEE-CCCCCCHHHHHHHHHHHHHh-cCceEEEecCchhh
Confidence 347788885 88899999999999999997 89888889877543
No 134
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.68 E-value=0.0018 Score=46.41 Aligned_cols=40 Identities=15% Similarity=0.257 Sum_probs=32.5
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~ 72 (207)
+++++|++ ..|+||||++..|+..+.. .|.++..|-.|..
T Consensus 2 ~~~v~IvG-~SGsGKSTL~~~L~~~~~~-~g~~~G~I~~dg~ 41 (171)
T 2f1r_A 2 SLILSIVG-TSDSGKTTLITRMMPILRE-RGLRVAVVKRHAH 41 (171)
T ss_dssp -CEEEEEE-SCHHHHHHHHHHHHHHHHH-TTCCEEEEEC---
T ss_pred ceEEEEEC-CCCCCHHHHHHHHHHHhhh-cCCceEEEEEcCc
Confidence 67899987 7899999999999999999 8888888877653
No 135
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.64 E-value=0.0031 Score=46.78 Aligned_cols=40 Identities=15% Similarity=0.100 Sum_probs=34.6
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~ 72 (207)
+.+++++ +..|+||||++..+|..++. .|.+|++++.+..
T Consensus 23 G~~~~i~-G~~GsGKTtl~~~l~~~~~~-~~~~v~~~~~~~~ 62 (235)
T 2w0m_A 23 GFFIALT-GEPGTGKTIFSLHFIAKGLR-DGDPCIYVTTEES 62 (235)
T ss_dssp TCEEEEE-CSTTSSHHHHHHHHHHHHHH-HTCCEEEEESSSC
T ss_pred CCEEEEE-cCCCCCHHHHHHHHHHHHHH-CCCeEEEEEcccC
Confidence 6677774 77999999999999998888 7889999998764
No 136
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=96.60 E-value=0.0047 Score=45.44 Aligned_cols=66 Identities=6% Similarity=0.025 Sum_probs=37.5
Q ss_pred CCCEEEEcCCCCCCcchhhhhhhhc----CceEEEeeCCc--hhhHHHHHHHHHHhhh-------CCCCeeEEEEccccC
Q 028600 139 NLDILVIDMPPGTGDAQLTTTQTLQ----LSGALIVSTPQ--DVALIDARKGITMFSK-------VQVPVCSFLAQIISS 205 (207)
Q Consensus 139 ~~D~IiiD~~~~~~~~~~~~~~~~~----~d~vi~v~~~~--~~~~~~~~~~l~~l~~-------~~~~~~g~v~N~~~~ 205 (207)
.+++.|+|+|+.-.........+.. +|.+++|++.. ..++..+...+..+.+ .+.++ -+|.|+.|-
T Consensus 54 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-ilv~nK~Dl 132 (218)
T 1nrj_B 54 GSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDI-LIACNKSEL 132 (218)
T ss_dssp GSSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCE-EEEEECTTS
T ss_pred CceEEEEECCCcHHHHHHHHHHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCE-EEEEEchHh
Confidence 4688999999642211121222223 78999998876 2344444444333321 35555 589999873
No 137
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=96.53 E-value=0.012 Score=44.76 Aligned_cols=22 Identities=32% Similarity=0.450 Sum_probs=17.0
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHH
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLA 53 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA 53 (207)
...|+++ +.+|+||||+.-.|.
T Consensus 22 ~~~I~lv-G~~g~GKStl~n~l~ 43 (260)
T 2xtp_A 22 ELRIILV-GKTGTGKSAAGNSIL 43 (260)
T ss_dssp CEEEEEE-ECTTSCHHHHHHHHH
T ss_pred ceEEEEE-CCCCCCHHHHHHHHh
Confidence 4556665 689999999987764
No 138
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=96.51 E-value=0.00098 Score=57.19 Aligned_cols=68 Identities=7% Similarity=-0.061 Sum_probs=36.5
Q ss_pred CCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCchhh-------HHHHHHHHHHhhhCCCCeeEEEEccccC
Q 028600 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVA-------LIDARKGITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~~~-------~~~~~~~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
..+.+.|+|||+-..........+..+|.+|+|+++.... ...+.+.+..+...+++.+-+++||+|.
T Consensus 253 ~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~lgip~iIvviNKiDl 327 (592)
T 3mca_A 253 DKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVVSVNKLDL 327 (592)
T ss_dssp ------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHSSCCCEEEEEECGGG
T ss_pred CCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEecccc
Confidence 5678999999963221122233444689999999887521 3555666677778888755689999883
No 139
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.43 E-value=0.0033 Score=45.18 Aligned_cols=38 Identities=21% Similarity=0.288 Sum_probs=30.2
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d 70 (207)
++.|.+ .+..|+||||++..||..+.. .|.+.-+++.|
T Consensus 3 ~~~I~i-~G~~GsGKsT~~~~L~~~l~~-~g~~~~~i~~~ 40 (192)
T 1kht_A 3 NKVVVV-TGVPGVGSTTSSQLAMDNLRK-EGVNYKMVSFG 40 (192)
T ss_dssp CCEEEE-ECCTTSCHHHHHHHHHHHHHT-TTCCCEEEEHH
T ss_pred CeEEEE-ECCCCCCHHHHHHHHHHHHHh-cCcceEEEehH
Confidence 456777 588899999999999999988 78656666644
No 140
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.40 E-value=0.0088 Score=56.88 Aligned_cols=41 Identities=17% Similarity=0.234 Sum_probs=35.7
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~ 73 (207)
+.++.+ .+.+|+||||++.++|..+++ .|.+|+++++.-..
T Consensus 732 G~lVlI-~G~PG~GKTtLal~lA~~aa~-~g~~VlyiS~Ees~ 772 (1706)
T 3cmw_A 732 GRIVEI-YGPESSGKTTLTLQVIAAAQR-EGKTCAFIDAEHAL 772 (1706)
T ss_dssp TSEEEE-ECSTTSSHHHHHHHHHHHHHH-TTCCEEEECTTSCC
T ss_pred CceEEE-ECCCCCCcHHHHHHHHHHHHH-cCCCeEEEeccchH
Confidence 556666 699999999999999999999 99999999988654
No 141
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.35 E-value=0.0047 Score=51.04 Aligned_cols=41 Identities=20% Similarity=0.291 Sum_probs=34.3
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~ 72 (207)
+.++.+ .+.+|+|||+++.++|...+...|.+|+++++...
T Consensus 200 G~l~ii-~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE~~ 240 (444)
T 2q6t_A 200 GSLNII-AARPAMGKTAFALTIAQNAALKEGVGVGIYSLEMP 240 (444)
T ss_dssp TCEEEE-EECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSSC
T ss_pred CcEEEE-EeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECCCC
Confidence 455555 68999999999999999999735899999999754
No 142
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.35 E-value=0.042 Score=40.07 Aligned_cols=38 Identities=26% Similarity=0.395 Sum_probs=28.0
Q ss_pred CCCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCC
Q 028600 29 GVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (207)
Q Consensus 29 ~~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~ 72 (207)
+.+.+|+++ +..|+||||++..|+..+. .+.+++.|..
T Consensus 19 ~~~~~i~i~-G~~GsGKSTl~~~L~~~~~-----~~~~i~~D~~ 56 (207)
T 2qt1_A 19 SKTFIIGIS-GVTNSGKTTLAKNLQKHLP-----NCSVISQDDF 56 (207)
T ss_dssp CCCEEEEEE-ESTTSSHHHHHHHHHTTST-----TEEEEEGGGG
T ss_pred CCCeEEEEE-CCCCCCHHHHHHHHHHhcC-----CcEEEeCCcc
Confidence 336788886 6679999999888776431 4788888853
No 143
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.35 E-value=0.0045 Score=45.64 Aligned_cols=40 Identities=33% Similarity=0.282 Sum_probs=34.2
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHH-HhCCCeEEEEecCC
Q 028600 30 VKDVIAVASGKGGVGKSTTAVNLAVALA-SKCQLKVGLLDADV 71 (207)
Q Consensus 30 ~~k~I~v~s~kgG~GkTt~a~~LA~~la-~~~g~~VlliD~d~ 71 (207)
.+++|.++ +..|+||||++..|+..+. . .|.++.++|.|.
T Consensus 24 ~~~~i~~~-G~~GsGKsT~~~~l~~~l~~~-~g~~~~~~~~d~ 64 (211)
T 1m7g_A 24 RGLTIWLT-GLSASGKSTLAVELEHQLVRD-RRVHAYRLDGDN 64 (211)
T ss_dssp SCEEEEEE-CSTTSSHHHHHHHHHHHHHHH-HCCCEEEECHHH
T ss_pred CCCEEEEE-CCCCCCHHHHHHHHHHHhccc-cCCcEEEECChH
Confidence 36788885 7789999999999999998 6 799999998764
No 144
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.34 E-value=0.0057 Score=50.67 Aligned_cols=42 Identities=29% Similarity=0.468 Sum_probs=35.3
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~ 73 (207)
+.++.+ .+.+|+||||++.++|..++...|.+|++++++...
T Consensus 203 G~liiI-~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s~ 244 (454)
T 2r6a_A 203 SDLIIV-AARPSVGKTAFALNIAQNVATKTNENVAIFSLEMSA 244 (454)
T ss_dssp TCEEEE-ECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSCH
T ss_pred CCEEEE-ECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCH
Confidence 556666 699999999999999999997468999999988643
No 145
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.34 E-value=0.01 Score=57.21 Aligned_cols=41 Identities=17% Similarity=0.234 Sum_probs=36.0
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~ 73 (207)
++++.+ .+.+|+||||++.++|..+++ .|.+|++||+.-..
T Consensus 383 G~lilI-~G~pGsGKTtLaLqia~~~a~-~G~~vlyis~E~s~ 423 (2050)
T 3cmu_A 383 GRIVEI-YGPESSGKTTLTLQVIAAAQR-EGKTCAFIDAEHAL 423 (2050)
T ss_dssp TSEEEE-ECCTTSSHHHHHHHHHHHHHT-TTCCEEEECTTSCC
T ss_pred CcEEEE-EeCCCCCHHHHHHHHHHHHHh-cCCeEEEEEcCCCH
Confidence 556666 699999999999999999999 89999999998644
No 146
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.32 E-value=0.0052 Score=44.78 Aligned_cols=37 Identities=22% Similarity=0.212 Sum_probs=31.7
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecC
Q 028600 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70 (207)
Q Consensus 32 k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d 70 (207)
+.+.+ .+.+|+|||+++..++..+.. .|.+++.+++.
T Consensus 55 ~~~~l-~G~~GtGKT~la~~i~~~~~~-~~~~~~~~~~~ 91 (202)
T 2w58_A 55 KGLYL-HGSFGVGKTYLLAAIANELAK-RNVSSLIVYVP 91 (202)
T ss_dssp CEEEE-ECSTTSSHHHHHHHHHHHHHT-TTCCEEEEEHH
T ss_pred CeEEE-ECCCCCCHHHHHHHHHHHHHH-cCCeEEEEEhH
Confidence 55666 588999999999999999998 89999988764
No 147
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=96.30 E-value=0.04 Score=46.52 Aligned_cols=65 Identities=9% Similarity=-0.062 Sum_probs=44.6
Q ss_pred CCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCchhhHHHHHHHHHHhhhCC--CCeeEEEEccccC
Q 028600 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQ--VPVCSFLAQIISS 205 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~~~~~~~~~~l~~l~~~~--~~~~g~v~N~~~~ 205 (207)
..+.+.|+|+|+.-.........+..+|.+++|++.... +.....++.+.+.+ .++ -+|.|+.|-
T Consensus 96 ~~~~~~i~Dt~G~e~~~~~~~~~l~~~d~ii~V~D~s~~--~~~~~~~~~l~~~~~~~pv-ilV~NK~Dl 162 (535)
T 3dpu_A 96 KECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSRTD--SNKHYWLRHIEKYGGKSPV-IVVMNKIDE 162 (535)
T ss_dssp TTCEEEEECCCSCCTTTTTCHHHHHSSEEEEEEECGGGG--GGHHHHHHHHHHHSSSCCE-EEEECCTTT
T ss_pred ceEEEEEEECCcHHHHHHHHHHHccCCcEEEEEEeCCCc--hhHHHHHHHHHHhCCCCCE-EEEEECCCc
Confidence 478899999997432223334445579999999987643 55566666666543 666 489999883
No 148
>3nva_A CTP synthase; rossman fold, nucleotide binding, LIG; 2.50A {Sulfolobus solfataricus}
Probab=96.28 E-value=0.054 Score=45.42 Aligned_cols=42 Identities=26% Similarity=0.349 Sum_probs=38.6
Q ss_pred CeEEEEEeCC-CCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCC
Q 028600 31 KDVIAVASGK-GGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (207)
Q Consensus 31 ~k~I~v~s~k-gG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~ 73 (207)
+|-|.|+++. .|.||-.+|+.|+..|.. +|.+|..+-+||+-
T Consensus 3 ~k~i~vtggv~s~lgkgi~~as~g~ll~~-~g~~v~~~k~dpyl 45 (535)
T 3nva_A 3 NKYIVVTGGVLSSVGKGTLVASIGMLLKR-RGYNVTAVKIDPYI 45 (535)
T ss_dssp CEEEEEECCCSTTTTHHHHHHHHHHHHHH-TTCCEEEEEEECSS
T ss_pred ceEEEEeCccccCcchHHHHHHHHHHHHH-CCceEEEEecCcce
Confidence 6888888866 999999999999999999 99999999999955
No 149
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.26 E-value=0.0045 Score=44.32 Aligned_cols=38 Identities=26% Similarity=0.307 Sum_probs=31.0
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEec
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDA 69 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~ 69 (207)
++.+.+ .+..|+||||++..++..+....|.++..+++
T Consensus 38 g~~~~l-~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~ 75 (180)
T 3ec2_A 38 GKGLTF-VGSPGVGKTHLAVATLKAIYEKKGIRGYFFDT 75 (180)
T ss_dssp CCEEEE-CCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEH
T ss_pred CCEEEE-ECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEH
Confidence 567777 58899999999999999998338988887654
No 150
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.20 E-value=0.012 Score=55.96 Aligned_cols=39 Identities=15% Similarity=0.239 Sum_probs=34.9
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~ 71 (207)
+++|-++++ .|+||||++.+++....+ .|..+++||+.-
T Consensus 1431 g~~iei~g~-~~sGkttl~~~~~a~~~~-~g~~~~~i~~e~ 1469 (1706)
T 3cmw_A 1431 GRIVEIYGP-ESSGKTTLTLQVIAAAQR-EGKTCAFIDAEH 1469 (1706)
T ss_dssp TSEEEEECS-TTSSHHHHHHHHHHHHHH-TTCCEEEECTTS
T ss_pred CCEEEEEcC-CCCCHHHHHHHHHHHHHh-cCCeEEEEecCC
Confidence 788999766 999999999999998888 999999999974
No 151
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.20 E-value=0.0078 Score=46.71 Aligned_cols=40 Identities=33% Similarity=0.369 Sum_probs=34.2
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~ 71 (207)
+.++++ .+..|+||||++.++|..++...|.+|++++.+.
T Consensus 35 G~~~~i-~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~ 74 (296)
T 1cr0_A 35 GEVIMV-TSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEE 74 (296)
T ss_dssp TCEEEE-EESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSS
T ss_pred CeEEEE-EeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcC
Confidence 667777 5888999999999999999983488999998875
No 152
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.19 E-value=0.0033 Score=45.96 Aligned_cols=38 Identities=26% Similarity=0.374 Sum_probs=28.0
Q ss_pred cCCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCC
Q 028600 27 IDGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (207)
Q Consensus 27 ~~~~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~ 71 (207)
+..++++|.+ .+-.|+||||++..|+..+ | ..++|.|.
T Consensus 14 m~~~~~~I~l-~G~~GsGKSTla~~L~~~l----g--~~~i~~d~ 51 (202)
T 3t61_A 14 VRRFPGSIVV-MGVSGSGKSSVGEAIAEAC----G--YPFIEGDA 51 (202)
T ss_dssp -CCCSSCEEE-ECSTTSCHHHHHHHHHHHH----T--CCEEEGGG
T ss_pred cCCCCeEEEE-ECCCCCCHHHHHHHHHHHh----C--CEEEeCCc
Confidence 3444677877 5888999999999998876 3 35677765
No 153
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=96.12 E-value=0.0039 Score=52.35 Aligned_cols=41 Identities=27% Similarity=0.215 Sum_probs=34.9
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhC-CCeEEEEecCCCC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKC-QLKVGLLDADVYG 73 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~-g~~VlliD~d~~~ 73 (207)
+.++.+ .+.+|+|||+++.++|..++. . |.+|++++++...
T Consensus 242 G~l~li-~G~pG~GKT~lal~~a~~~a~-~~g~~vl~~s~E~s~ 283 (503)
T 1q57_A 242 GEVIMV-TSGSGMVMSTFVRQQALQWGT-AMGKKVGLAMLEESV 283 (503)
T ss_dssp TCEEEE-EESSCHHHHHHHHHHHHHHTT-TSCCCEEEEESSSCH
T ss_pred CeEEEE-eecCCCCchHHHHHHHHHHHH-hcCCcEEEEeccCCH
Confidence 445555 789999999999999999998 6 9999999998643
No 154
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.11 E-value=0.0081 Score=43.46 Aligned_cols=38 Identities=16% Similarity=0.217 Sum_probs=31.1
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d 70 (207)
++++.+ .+..|+||||++..++..+.. .|++|+++-..
T Consensus 3 g~i~vi-~G~~gsGKTT~ll~~~~~~~~-~g~~v~~~~~~ 40 (184)
T 2orw_A 3 GKLTVI-TGPMYSGKTTELLSFVEIYKL-GKKKVAVFKPK 40 (184)
T ss_dssp CCEEEE-EESTTSSHHHHHHHHHHHHHH-TTCEEEEEEEC
T ss_pred cEEEEE-ECCCCCCHHHHHHHHHHHHHH-CCCeEEEEeec
Confidence 455555 567788999999999999998 99999998543
No 155
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.10 E-value=0.0093 Score=44.26 Aligned_cols=39 Identities=8% Similarity=0.023 Sum_probs=33.7
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~ 71 (207)
++.+.+ .+..|+||||++..+|..+.. .|.++..++++.
T Consensus 52 ~~~~ll-~G~~G~GKT~la~~l~~~~~~-~~~~~~~~~~~~ 90 (242)
T 3bos_A 52 VQAIYL-WGPVKSGRTHLIHAACARANE-LERRSFYIPLGI 90 (242)
T ss_dssp CSEEEE-ECSTTSSHHHHHHHHHHHHHH-TTCCEEEEEGGG
T ss_pred CCeEEE-ECCCCCCHHHHHHHHHHHHHH-cCCeEEEEEHHH
Confidence 456666 588899999999999999999 899999998864
No 156
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=96.09 E-value=0.014 Score=48.42 Aligned_cols=68 Identities=16% Similarity=0.076 Sum_probs=47.9
Q ss_pred CCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCchhhHH-------HHHHHHHHhhhCCCCeeEEEEccccC
Q 028600 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALI-------DARKGITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~~~~~-------~~~~~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
..+.++|+|||+--.........+..+|.+|+|+++...... +..+.+..+...+++.+-+++||.|.
T Consensus 83 ~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~~v~~iivviNK~Dl 157 (458)
T 1f60_A 83 PKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDS 157 (458)
T ss_dssp SSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEECGGG
T ss_pred CCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHcCCCeEEEEEEcccc
Confidence 567899999996332222233445579999999999875444 56666666777788755689999884
No 157
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.09 E-value=0.011 Score=42.45 Aligned_cols=34 Identities=35% Similarity=0.353 Sum_probs=28.1
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEe
Q 028600 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLD 68 (207)
Q Consensus 33 ~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD 68 (207)
+|++ .+-.|+||||++..|+..+.. .|..++-.|
T Consensus 2 ~I~l-~G~~GsGKsT~~~~L~~~l~~-~g~~~i~~d 35 (195)
T 2pbr_A 2 LIAF-EGIDGSGKTTQAKKLYEYLKQ-KGYFVSLYR 35 (195)
T ss_dssp EEEE-ECSTTSCHHHHHHHHHHHHHH-TTCCEEEEE
T ss_pred EEEE-ECCCCCCHHHHHHHHHHHHHH-CCCeEEEEe
Confidence 4666 477899999999999999988 898876554
No 158
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=96.08 E-value=0.0074 Score=51.24 Aligned_cols=39 Identities=41% Similarity=0.351 Sum_probs=34.4
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~ 71 (207)
+.+|.++ +..|+||||++..|+..+.. .|.++.++|.|.
T Consensus 372 ~~~I~l~-G~~GsGKSTia~~La~~L~~-~G~~~~~ld~D~ 410 (546)
T 2gks_A 372 GFCVWLT-GLPCAGKSTIAEILATMLQA-RGRKVTLLDGDV 410 (546)
T ss_dssp CEEEEEE-CSTTSSHHHHHHHHHHHHHH-TTCCEEEECHHH
T ss_pred ceEEEcc-CCCCCCHHHHHHHHHHHhhh-cCCeEEEECchH
Confidence 5677775 77889999999999999999 899999999884
No 159
>2vo1_A CTP synthase 1; pyrimidine biosynthesis, glutamine amidotransferase, phosphorylation, amidotransferase, cytidine 5-prime triphos synthetase, UTP; 2.8A {Homo sapiens} SCOP: c.37.1.10 PDB: 3ihl_A*
Probab=96.06 E-value=0.12 Score=39.41 Aligned_cols=42 Identities=31% Similarity=0.418 Sum_probs=36.8
Q ss_pred CeEEEEEe-CCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCC
Q 028600 31 KDVIAVAS-GKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (207)
Q Consensus 31 ~k~I~v~s-~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~ 73 (207)
+|-|.|++ --.|.||-.+|+.||..|.. +|.+|..+-+||+-
T Consensus 23 ~KyIfVTGGVvS~lGKGi~aaSlg~lLk~-~G~~Vt~~K~DPYl 65 (295)
T 2vo1_A 23 MKYILVTGGVISGIGKGIIASSVGTILKS-CGLHVTSIKIDPYI 65 (295)
T ss_dssp CEEEEEEECSSSSSSHHHHHHHHHHHHHH-TTCCEEEEEEECSS
T ss_pred ceEEEEcCCcccccccHHHHHHHHHHHHH-CCCcceeeecccce
Confidence 67666665 56899999999999999999 99999999999965
No 160
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.00 E-value=0.015 Score=42.64 Aligned_cols=40 Identities=35% Similarity=0.426 Sum_probs=33.9
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCC
Q 028600 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (207)
Q Consensus 30 ~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~ 71 (207)
.+.+|++ .+..|+||||++..|+..+.. .|.++..|..|.
T Consensus 21 ~g~~v~I-~G~sGsGKSTl~~~l~~~~~~-~g~~~g~v~~d~ 60 (208)
T 3c8u_A 21 GRQLVAL-SGAPGSGKSTLSNPLAAALSA-QGLPAEVVPMDG 60 (208)
T ss_dssp SCEEEEE-ECCTTSCTHHHHHHHHHHHHH-TTCCEEEEESGG
T ss_pred CCeEEEE-ECCCCCCHHHHHHHHHHHHhh-cCCceEEEecCC
Confidence 3778888 488899999999999999988 687788887764
No 161
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=95.97 E-value=0.013 Score=48.22 Aligned_cols=68 Identities=13% Similarity=0.098 Sum_probs=49.1
Q ss_pred CCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCchhhHH-------HHHHHHHHhhhCCCCeeEEEEccccC
Q 028600 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALI-------DARKGITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~~~~~-------~~~~~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
..+.+.|+|||+-..........+..+|.+|+|+++...+.+ .+.+.+..+...+.+.+-+++||.|.
T Consensus 82 ~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl 156 (435)
T 1jny_A 82 KKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDL 156 (435)
T ss_dssp SSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGG
T ss_pred CCeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEEcccC
Confidence 578899999996433223334455679999999999886554 55666666677787655689999883
No 162
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=95.95 E-value=0.0062 Score=43.65 Aligned_cols=34 Identities=29% Similarity=0.286 Sum_probs=25.3
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~ 71 (207)
++.|.++ +..|+||||++..||..+ |. .++|.|.
T Consensus 5 ~~~i~l~-G~~GsGKst~a~~La~~l----~~--~~i~~d~ 38 (185)
T 3trf_A 5 LTNIYLI-GLMGAGKTSVGSQLAKLT----KR--ILYDSDK 38 (185)
T ss_dssp CCEEEEE-CSTTSSHHHHHHHHHHHH----CC--CEEEHHH
T ss_pred CCEEEEE-CCCCCCHHHHHHHHHHHh----CC--CEEEChH
Confidence 5677775 669999999999998865 33 4566664
No 163
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=95.91 E-value=0.011 Score=48.85 Aligned_cols=68 Identities=12% Similarity=0.062 Sum_probs=48.7
Q ss_pred CCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCchhhH-------HHHHHHHHHhhhCCCCeeEEEEccccC
Q 028600 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVAL-------IDARKGITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~~~~-------~~~~~~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
..+.++|+|||+--.........+..+|.+++|+++...-. .+..+.+..+...+.+.+-+++||.|.
T Consensus 93 ~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIvviNK~Dl 167 (439)
T 3j2k_7 93 EKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVLINKMDD 167 (439)
T ss_pred CCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEEEeecCCC
Confidence 56789999999632211223344557999999999887443 367777777788888855689999984
No 164
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.89 E-value=0.0064 Score=48.06 Aligned_cols=40 Identities=20% Similarity=0.205 Sum_probs=33.4
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhC------CCeEEEEecCCC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKC------QLKVGLLDADVY 72 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~------g~~VlliD~d~~ 72 (207)
+.++.+ .+.+|+|||+++.++|...+. . |.+|++||++..
T Consensus 107 G~i~~i-~G~~GsGKT~la~~la~~~~~-~~~~gg~~~~vlyi~~e~~ 152 (324)
T 2z43_A 107 RTMTEF-FGEFGSGKTQLCHQLSVNVQL-PPEKGGLSGKAVYIDTEGT 152 (324)
T ss_dssp TSEEEE-EESTTSSHHHHHHHHHHHTTS-CGGGTCCSCEEEEEESSSC
T ss_pred CcEEEE-ECCCCCCHhHHHHHHHHHHhc-ccccCCCCCeEEEEECCCC
Confidence 556666 577999999999999998776 5 889999999864
No 165
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.87 E-value=0.014 Score=42.73 Aligned_cols=36 Identities=31% Similarity=0.393 Sum_probs=30.2
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEe
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLD 68 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD 68 (207)
+++|+++ +-.|+||||++..||..+.. .|.+|..+.
T Consensus 9 ~~~I~l~-G~~GsGKsT~~~~L~~~l~~-~~~~v~~~~ 44 (215)
T 1nn5_A 9 GALIVLE-GVDRAGKSTQSRKLVEALCA-AGHRAELLR 44 (215)
T ss_dssp CCEEEEE-ESTTSSHHHHHHHHHHHHHH-TTCCEEEEE
T ss_pred CcEEEEE-CCCCCCHHHHHHHHHHHHHH-cCCcEEEee
Confidence 5678885 66899999999999999998 899885553
No 166
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.87 E-value=0.0054 Score=43.39 Aligned_cols=33 Identities=33% Similarity=0.482 Sum_probs=25.4
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d 70 (207)
+++|.++ +..|+||||++..||..+ |. -++|.|
T Consensus 2 ~~~I~l~-G~~GsGKsT~a~~La~~l----g~--~~id~d 34 (173)
T 1e6c_A 2 TEPIFMV-GARGCGMTTVGRELARAL----GY--EFVDTD 34 (173)
T ss_dssp CCCEEEE-SCTTSSHHHHHHHHHHHH----TC--EEEEHH
T ss_pred CceEEEE-CCCCCCHHHHHHHHHHHh----CC--cEEccc
Confidence 5677775 678999999999998865 33 467776
No 167
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=95.86 E-value=0.024 Score=54.75 Aligned_cols=41 Identities=17% Similarity=0.234 Sum_probs=35.5
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~ 73 (207)
+.++.+ .+.+|+|||+++.++|..++. .|.+|++|++.-..
T Consensus 732 G~lilI-aG~PG~GKTtLalqlA~~~a~-~g~~VlyiS~Ees~ 772 (2050)
T 3cmu_A 732 GRIVEI-YGPESSGKTTLTLQVIAAAQR-EGKTCAFIDAEHAL 772 (2050)
T ss_dssp TSEEEE-ECCTTSSHHHHHHHHHHHHHT-TTCCEEEECTTSCC
T ss_pred CcEEEE-EcCCCCCHHHHHHHHHHHHHh-cCCcEEEEECCCcH
Confidence 455555 799999999999999999999 89999999988654
No 168
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=95.82 E-value=0.0069 Score=45.00 Aligned_cols=37 Identities=16% Similarity=0.043 Sum_probs=30.6
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEec
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDA 69 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~ 69 (207)
+.+..++ +.=|+||||.....+..+.. .|++|+++-.
T Consensus 28 G~I~vit-G~M~sGKTT~Llr~~~r~~~-~g~kvli~kp 64 (219)
T 3e2i_A 28 GWIECIT-GSMFSGKSEELIRRLRRGIY-AKQKVVVFKP 64 (219)
T ss_dssp CEEEEEE-ECTTSCHHHHHHHHHHHHHH-TTCCEEEEEE
T ss_pred ceEEEEE-CCCCCCHHHHHHHHHHHHHH-cCCceEEEEe
Confidence 6666665 44688999999999999988 9999999954
No 169
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.82 E-value=0.013 Score=42.70 Aligned_cols=35 Identities=31% Similarity=0.282 Sum_probs=28.0
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEe
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLD 68 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD 68 (207)
++.|++ .+-.|+||||++..||..+.. .| +|...+
T Consensus 4 ~~~I~i-~G~~GsGKsT~~~~L~~~l~~-~g-~~~~~~ 38 (213)
T 2plr_A 4 GVLIAF-EGIDGSGKSSQATLLKDWIEL-KR-DVYLTE 38 (213)
T ss_dssp CEEEEE-ECCTTSSHHHHHHHHHHHHTT-TS-CEEEEE
T ss_pred CeEEEE-EcCCCCCHHHHHHHHHHHHhh-cC-CEEEec
Confidence 466777 578899999999999999987 77 665443
No 170
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=95.81 E-value=0.014 Score=48.02 Aligned_cols=68 Identities=10% Similarity=0.045 Sum_probs=47.8
Q ss_pred CCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCchhhHHHHHHHHHHhhhCCCCeeEEEEccccC
Q 028600 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~~~~~~~~~~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
..+.+.|+|||+--.........+..+|.+++|+++.........+.+..+...+.+.+-+++||.|.
T Consensus 102 ~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~~~~~~iIvviNK~Dl 169 (434)
T 1zun_B 102 AKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINKMDL 169 (434)
T ss_dssp SSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEEECTTT
T ss_pred CCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEEcCcC
Confidence 45679999999632211222344567999999999887555566666677777777756689999984
No 171
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=95.80 E-value=0.013 Score=45.99 Aligned_cols=38 Identities=24% Similarity=0.271 Sum_probs=32.2
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHH-HhCCCeEEEEecC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALA-SKCQLKVGLLDAD 70 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la-~~~g~~VlliD~d 70 (207)
.+-+.+ .+..|+|||+++..+|..+. + .|.+|.++.+.
T Consensus 152 ~~~lll-~G~~GtGKT~La~aia~~~~~~-~g~~v~~~~~~ 190 (308)
T 2qgz_A 152 QKGLYL-YGDMGIGKSYLLAAMAHELSEK-KGVSTTLLHFP 190 (308)
T ss_dssp CCEEEE-ECSTTSSHHHHHHHHHHHHHHH-SCCCEEEEEHH
T ss_pred CceEEE-ECCCCCCHHHHHHHHHHHHHHh-cCCcEEEEEHH
Confidence 345555 58899999999999999999 8 99999998764
No 172
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=95.78 E-value=0.011 Score=41.09 Aligned_cols=39 Identities=23% Similarity=0.236 Sum_probs=33.3
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~ 71 (207)
++.+.+ .+..|+||||++..++..+.. .|.++..++...
T Consensus 36 g~~~~l-~G~~G~GKTtL~~~i~~~~~~-~g~~~~~~~~~~ 74 (149)
T 2kjq_A 36 GQFIYV-WGEEGAGKSHLLQAWVAQALE-AGKNAAYIDAAS 74 (149)
T ss_dssp CSEEEE-ESSSTTTTCHHHHHHHHHHHT-TTCCEEEEETTT
T ss_pred CCEEEE-ECCCCCCHHHHHHHHHHHHHh-cCCcEEEEcHHH
Confidence 567777 478999999999999999988 899999987653
No 173
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.70 E-value=0.025 Score=44.89 Aligned_cols=36 Identities=22% Similarity=0.493 Sum_probs=27.5
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~ 73 (207)
+++|.+ .+-.|+||||++..||..+ ..-+||+|...
T Consensus 40 ~~lIvI-~GPTgsGKTtLa~~LA~~l------~~eiIs~Ds~q 75 (339)
T 3a8t_A 40 EKLLVL-MGATGTGKSRLSIDLAAHF------PLEVINSDKMQ 75 (339)
T ss_dssp CEEEEE-ECSTTSSHHHHHHHHHTTS------CEEEEECCSST
T ss_pred CceEEE-ECCCCCCHHHHHHHHHHHC------CCcEEcccccc
Confidence 456766 5778999999999998743 35789999653
No 174
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.68 E-value=0.018 Score=45.45 Aligned_cols=44 Identities=30% Similarity=0.321 Sum_probs=34.2
Q ss_pred CCCeEEEEEeCCCCCcHHHHHHHHHHHHHHh-CCCeEEEEecCCCC
Q 028600 29 GVKDVIAVASGKGGVGKSTTAVNLAVALASK-CQLKVGLLDADVYG 73 (207)
Q Consensus 29 ~~~k~I~v~s~kgG~GkTt~a~~LA~~la~~-~g~~VlliD~d~~~ 73 (207)
+.+.+|++ .+..|+||||++..|+..+... .+.+|.++..|...
T Consensus 90 ~~p~iigI-~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f~ 134 (321)
T 3tqc_A 90 KVPYIIGI-AGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGFL 134 (321)
T ss_dssp CCCEEEEE-ECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGB
T ss_pred CCCEEEEE-ECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecccc
Confidence 34668888 5888999999999999988741 35689999988643
No 175
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=95.67 E-value=0.0063 Score=43.28 Aligned_cols=35 Identities=23% Similarity=0.214 Sum_probs=25.8
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d 70 (207)
+++|.+ ++-.|+||||++..||..+ +.....++.|
T Consensus 3 ~~~i~l-~G~~GsGKST~a~~La~~l----~~~~~~~~~D 37 (178)
T 1qhx_A 3 TRMIIL-NGGSSAGKSGIVRCLQSVL----PEPWLAFGVD 37 (178)
T ss_dssp CCEEEE-ECCTTSSHHHHHHHHHHHS----SSCEEEEEHH
T ss_pred ceEEEE-ECCCCCCHHHHHHHHHHhc----CCCeEEeccc
Confidence 455655 6889999999999988754 4456666666
No 176
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.67 E-value=0.01 Score=46.23 Aligned_cols=42 Identities=26% Similarity=0.160 Sum_probs=32.2
Q ss_pred CCCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCC--CeEEEE-ecCCC
Q 028600 29 GVKDVIAVASGKGGVGKSTTAVNLAVALASKCQ--LKVGLL-DADVY 72 (207)
Q Consensus 29 ~~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g--~~Vlli-D~d~~ 72 (207)
+.+.+|+| .+..|+||||++..|+..+.. .| .++..+ ..|..
T Consensus 29 ~~~~ii~I-~G~sGsGKSTla~~L~~~l~~-~g~~~~~~~iv~~D~f 73 (290)
T 1odf_A 29 KCPLFIFF-SGPQGSGKSFTSIQIYNHLME-KYGGEKSIGYASIDDF 73 (290)
T ss_dssp CSCEEEEE-ECCTTSSHHHHHHHHHHHHHH-HHGGGSCEEEEEGGGG
T ss_pred CCCeEEEE-ECCCCCCHHHHHHHHHHHhhh-cCCCCceEEEeccccc
Confidence 34678888 588899999999999999987 55 444444 77753
No 177
>3do6_A Formate--tetrahydrofolate ligase; TM1766, putative formyltetrahydrofolate synthetase, structural genomics; HET: MSE; 1.85A {Thermotoga maritima} SCOP: c.37.1.0
Probab=95.66 E-value=0.0063 Score=50.14 Aligned_cols=52 Identities=23% Similarity=0.300 Sum_probs=43.2
Q ss_pred CCCeEEEEEe---CCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCCCccccccccC
Q 028600 29 GVKDVIAVAS---GKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGPSVPMMMKIDQ 84 (207)
Q Consensus 29 ~~~k~I~v~s---~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~~l~~~~~~~~ 84 (207)
+.+|.|.|++ +.-|+||||++..|+.+|.+ .|+++.+ ..+.||+--.||.+.
T Consensus 41 ~~GklIlVTaItPTPaGEGKtTttiGL~~aL~~-lgk~~~~---~lRePSlGP~FGiKG 95 (543)
T 3do6_A 41 EDGKLILVTAVTPTPAGEGKTTTSIGLSMSLNR-IGKKSIV---TLREPSLGPTLGLKG 95 (543)
T ss_dssp CCCEEEEEEESSCCTTCCCHHHHHHHHHHHHHH-TTCCEEE---EECCCCHHHHHHSCC
T ss_pred CCCeEEEEEecCCCCCCCCccchHHHHHHHHHh-cCCeeEE---EEecCCCCCcCCccc
Confidence 4488887765 56799999999999999999 9999976 477888888888764
No 178
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=95.66 E-value=0.0067 Score=43.15 Aligned_cols=34 Identities=41% Similarity=0.377 Sum_probs=25.1
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~ 71 (207)
|+.|.+ .+..|+||||++..||..+.- .++|.|.
T Consensus 4 m~~i~i-~G~~GsGKsTla~~La~~l~~------~~~d~d~ 37 (175)
T 1via_A 4 AKNIVF-IGFMGSGKSTLARALAKDLDL------VFLDSDF 37 (175)
T ss_dssp -CCEEE-ECCTTSCHHHHHHHHHHHHTC------EEEEHHH
T ss_pred CCEEEE-EcCCCCCHHHHHHHHHHHcCC------CEEcccH
Confidence 456777 488999999999999876532 5677764
No 179
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=95.62 E-value=0.017 Score=49.78 Aligned_cols=41 Identities=24% Similarity=0.278 Sum_probs=34.9
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCC
Q 028600 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (207)
Q Consensus 30 ~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~ 72 (207)
++++|.| .+-.|+||||++..||..|.+ .|.++..+|.|.-
T Consensus 51 ~g~lIvL-tGlsGSGKSTlAr~La~~L~~-~G~~~v~lDgD~i 91 (630)
T 1x6v_B 51 RGCTVWL-TGLSGAGKTTVSMALEEYLVC-HGIPCYTLDGDNI 91 (630)
T ss_dssp CCEEEEE-ECSTTSSHHHHHHHHHHHHHH-TTCCEEEESHHHH
T ss_pred CCCEEEE-EeCCCCCHHHHHHHHHHHHHh-cCCeEEEechHHh
Confidence 4667777 578899999999999999998 8999999987643
No 180
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=95.62 E-value=0.038 Score=38.03 Aligned_cols=67 Identities=12% Similarity=0.086 Sum_probs=44.1
Q ss_pred CCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCch-hhHHHHHHHHHHhhhC----CCCeeEEEEccccC
Q 028600 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDARKGITMFSKV----QVPVCSFLAQIISS 205 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~-~~~~~~~~~l~~l~~~----~~~~~g~v~N~~~~ 205 (207)
..+++.++|+|+...........+..+|.+++|.+... .+...+...++.+.+. +.++ -+|+||.|.
T Consensus 49 ~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~-iiv~nK~Dl 120 (166)
T 2ce2_X 49 ETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPM-VLVGNKSDL 120 (166)
T ss_dssp EEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCE-EEEEECTTC
T ss_pred EEEEEEEEECCCchhhhHHHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcE-EEEEEchhh
Confidence 45788999999754323333444557899999888763 3455566555555432 5565 599999883
No 181
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.61 E-value=0.018 Score=41.99 Aligned_cols=36 Identities=28% Similarity=0.235 Sum_probs=30.0
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEe
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLD 68 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD 68 (207)
+++|+++ +-.|+||||++..||..+.. .+.++.++.
T Consensus 10 ~~~I~l~-G~~GsGKST~~~~L~~~l~~-~~~~~~~~~ 45 (212)
T 2wwf_A 10 GKFIVFE-GLDRSGKSTQSKLLVEYLKN-NNVEVKHLY 45 (212)
T ss_dssp SCEEEEE-ESTTSSHHHHHHHHHHHHHH-TTCCEEEEE
T ss_pred CCEEEEE-cCCCCCHHHHHHHHHHHHHH-cCCcEEEEe
Confidence 5678885 67789999999999999998 888885544
No 182
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=95.59 E-value=0.017 Score=45.31 Aligned_cols=43 Identities=35% Similarity=0.419 Sum_probs=34.4
Q ss_pred CCCeEEEEEeCCCCCcHHHHHHHHHHHHH--HhCCCeEEEEecCCCC
Q 028600 29 GVKDVIAVASGKGGVGKSTTAVNLAVALA--SKCQLKVGLLDADVYG 73 (207)
Q Consensus 29 ~~~k~I~v~s~kgG~GkTt~a~~LA~~la--~~~g~~VlliD~d~~~ 73 (207)
+.+.+|+++ +..|+||||++..|+..+. - .+-+|.+|++|-..
T Consensus 78 ~~g~iigI~-G~~GsGKSTl~~~L~~~l~~~~-~~G~i~vi~~d~~~ 122 (308)
T 1sq5_A 78 RIPYIISIA-GSVAVGKSTTARVLQALLSRWP-EHRRVELITTDGFL 122 (308)
T ss_dssp CCCEEEEEE-ECTTSSHHHHHHHHHHHHTTST-TCCCEEEEEGGGGB
T ss_pred CCCEEEEEE-CCCCCCHHHHHHHHHHHHhhCC-CCCeEEEEecCCcc
Confidence 347889996 7789999999999999886 4 45679999988644
No 183
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=95.57 E-value=0.018 Score=48.54 Aligned_cols=40 Identities=15% Similarity=0.143 Sum_probs=33.9
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~ 71 (207)
++.+.++.+-.|+||||++..||..+.. .+.++.+++.|.
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~~-~~~d~~v~s~D~ 73 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLNW-IGVPTKVFNVGE 73 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhh-cCCCeEEecccH
Confidence 3444555689999999999999999998 899999998885
No 184
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.55 E-value=0.0056 Score=43.91 Aligned_cols=34 Identities=47% Similarity=0.573 Sum_probs=25.4
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~ 71 (207)
+++|.+ .+..|+||||++..||..+ |. .++|.|.
T Consensus 2 ~~~I~l-~G~~GsGKsT~a~~La~~l----g~--~~id~D~ 35 (184)
T 2iyv_A 2 APKAVL-VGLPGSGKSTIGRRLAKAL----GV--GLLDTDV 35 (184)
T ss_dssp CCSEEE-ECSTTSSHHHHHHHHHHHH----TC--CEEEHHH
T ss_pred CCeEEE-ECCCCCCHHHHHHHHHHHc----CC--CEEeCch
Confidence 345666 5889999999999998865 33 3677774
No 185
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.53 E-value=0.025 Score=40.69 Aligned_cols=35 Identities=37% Similarity=0.284 Sum_probs=28.2
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEec
Q 028600 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDA 69 (207)
Q Consensus 33 ~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~ 69 (207)
.|++ .+-.|+||||++..|+..+.. .|.+|+..+.
T Consensus 2 ~I~l-~G~~GsGKsT~~~~L~~~l~~-~g~~v~~~~~ 36 (197)
T 2z0h_A 2 FITF-EGIDGSGKSTQIQLLAQYLEK-RGKKVILKRE 36 (197)
T ss_dssp EEEE-ECSTTSSHHHHHHHHHHHHHH-CCC-EEEEES
T ss_pred EEEE-ECCCCCCHHHHHHHHHHHHHH-CCCeEEEeeC
Confidence 4666 477899999999999999998 8999876543
No 186
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=95.52 E-value=0.024 Score=41.99 Aligned_cols=36 Identities=31% Similarity=0.333 Sum_probs=31.1
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEe
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLD 68 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD 68 (207)
++.|+| .+-.|+||||.+..|+..+.. .|.+|.+..
T Consensus 6 g~~i~~-eG~~gsGKsT~~~~l~~~l~~-~~~~v~~~~ 41 (213)
T 4edh_A 6 GLFVTL-EGPEGAGKSTNRDYLAERLRE-RGIEVQLTR 41 (213)
T ss_dssp CEEEEE-ECSTTSSHHHHHHHHHHHHHT-TTCCEEEEE
T ss_pred ceEEEE-EcCCCCCHHHHHHHHHHHHHH-cCCCccccc
Confidence 567777 588899999999999999999 999997653
No 187
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=95.49 E-value=0.057 Score=40.30 Aligned_cols=22 Identities=36% Similarity=0.498 Sum_probs=16.6
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHH
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLA 53 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA 53 (207)
...|++. +..|+||||+.-.|.
T Consensus 29 ~~~i~lv-G~~g~GKStlin~l~ 50 (239)
T 3lxx_A 29 QLRIVLV-GKTGAGKSATGNSIL 50 (239)
T ss_dssp EEEEEEE-CCTTSSHHHHHHHHH
T ss_pred ceEEEEE-CCCCCCHHHHHHHHc
Confidence 3456664 889999999987764
No 188
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=95.46 E-value=0.018 Score=49.14 Aligned_cols=40 Identities=30% Similarity=0.227 Sum_probs=34.1
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCC-CeEEEEecCC
Q 028600 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQ-LKVGLLDADV 71 (207)
Q Consensus 30 ~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g-~~VlliD~d~ 71 (207)
.+.+|.++ +-.|+||||++..|+..|.. .| .++.++|.|.
T Consensus 395 ~~~~I~l~-GlsGSGKSTiA~~La~~L~~-~G~~~~~~lD~D~ 435 (573)
T 1m8p_A 395 QGFTIFLT-GYMNSGKDAIARALQVTLNQ-QGGRSVSLLLGDT 435 (573)
T ss_dssp CCEEEEEE-CSTTSSHHHHHHHHHHHHHH-HCSSCEEEEEHHH
T ss_pred cceEEEee-cCCCCCHHHHHHHHHHHhcc-cCCceEEEECcHH
Confidence 35677775 78889999999999999998 78 9999999775
No 189
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=95.46 E-value=0.034 Score=39.87 Aligned_cols=67 Identities=22% Similarity=0.256 Sum_probs=45.4
Q ss_pred CCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCchh-hHHHHHHHHHHhhhC-----------CCCeeEEEEccccC
Q 028600 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDV-ALIDARKGITMFSKV-----------QVPVCSFLAQIISS 205 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~~-~~~~~~~~l~~l~~~-----------~~~~~g~v~N~~~~ 205 (207)
..+.+.|+|+|+.-.........+..+|.+|+|++.... ++..+...+..+.+. +.++ -+|.||.|-
T Consensus 61 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~pi-ilv~NK~Dl 139 (199)
T 4bas_A 61 GRVAFTVFDMGGAKKFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPF-LFFANKMDA 139 (199)
T ss_dssp TTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCE-EEEEECTTS
T ss_pred CCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCE-EEEEECcCC
Confidence 678899999996433223323345579999999987754 567776666655443 5565 589999884
No 190
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=95.42 E-value=0.014 Score=42.55 Aligned_cols=34 Identities=29% Similarity=0.343 Sum_probs=25.7
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~ 71 (207)
++.|.++ +..|+||||++..||..+ |.. ++|.|.
T Consensus 25 ~~~i~l~-G~~GsGKsTl~~~La~~l----~~~--~i~~d~ 58 (199)
T 3vaa_A 25 MVRIFLT-GYMGAGKTTLGKAFARKL----NVP--FIDLDW 58 (199)
T ss_dssp CCEEEEE-CCTTSCHHHHHHHHHHHH----TCC--EEEHHH
T ss_pred CCEEEEE-cCCCCCHHHHHHHHHHHc----CCC--EEcchH
Confidence 6677774 889999999999999876 333 456653
No 191
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.38 E-value=0.009 Score=42.25 Aligned_cols=33 Identities=39% Similarity=0.511 Sum_probs=24.6
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d 70 (207)
+++|+++ +..|+||||++..||..+ |. .++|.|
T Consensus 4 ~~~i~l~-G~~GsGKSTl~~~La~~l----~~--~~id~d 36 (173)
T 1kag_A 4 KRNIFLV-GPMGAGKSTIGRQLAQQL----NM--EFYDSD 36 (173)
T ss_dssp CCCEEEE-CCTTSCHHHHHHHHHHHT----TC--EEEEHH
T ss_pred CCeEEEE-CCCCCCHHHHHHHHHHHh----CC--CEEecc
Confidence 4677775 778999999998887754 32 567766
No 192
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=95.37 E-value=0.042 Score=38.52 Aligned_cols=67 Identities=16% Similarity=0.223 Sum_probs=45.0
Q ss_pred CCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCch-hhHHHHHHHHHHhhhC-----CCCeeEEEEccccC
Q 028600 139 NLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDARKGITMFSKV-----QVPVCSFLAQIISS 205 (207)
Q Consensus 139 ~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~-~~~~~~~~~l~~l~~~-----~~~~~g~v~N~~~~ 205 (207)
.+.+.|+|+|+.-.........+..+|.+++|.+... .+.+.+...++.+.+. +.+.+-+|.|+.|-
T Consensus 55 ~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl 127 (178)
T 2hxs_A 55 NVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDL 127 (178)
T ss_dssp EEEEEEEECTTCCTTCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGG
T ss_pred EEEEEEEECCCCccccchhhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEcccc
Confidence 4788999999753322333445567999999998764 3566666666655542 55656789999873
No 193
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=95.36 E-value=0.072 Score=39.34 Aligned_cols=33 Identities=33% Similarity=0.380 Sum_probs=25.2
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~ 71 (207)
+-.|+++ +.-|+||||++..|+. .|.. +||+|.
T Consensus 9 ~~~iglT-GgigsGKStv~~~l~~-----~g~~--vidaD~ 41 (210)
T 4i1u_A 9 MYAIGLT-GGIGSGKTTVADLFAA-----RGAS--LVDTDL 41 (210)
T ss_dssp CCEEEEE-CCTTSCHHHHHHHHHH-----TTCE--EEEHHH
T ss_pred eeEEEEE-CCCCCCHHHHHHHHHH-----CCCc--EEECcH
Confidence 6678897 6678999999887754 5655 578886
No 194
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.35 E-value=0.023 Score=43.68 Aligned_cols=39 Identities=36% Similarity=0.330 Sum_probs=30.5
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhC----------CCeEEEEecCC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKC----------QLKVGLLDADV 71 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~----------g~~VlliD~d~ 71 (207)
+.++.+ .+..|+||||++..++..++. - +.+|++++...
T Consensus 30 G~i~~i-~G~~GsGKTtl~~~l~~~~~~-g~~~~g~~~~~~~~v~~~~~e~ 78 (279)
T 1nlf_A 30 GTVGAL-VSPGGAGKSMLALQLAAQIAG-GPDLLEVGELPTGPVIYLPAED 78 (279)
T ss_dssp TSEEEE-EESTTSSHHHHHHHHHHHHHT-CCCTTCCCCCCCCCEEEEESSS
T ss_pred CCEEEE-EcCCCCCHHHHHHHHHHHHhc-CCCcCCCccCCCccEEEEECCC
Confidence 667777 588999999999999997765 2 35788877654
No 195
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=95.33 E-value=0.04 Score=44.27 Aligned_cols=23 Identities=22% Similarity=0.232 Sum_probs=17.9
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHH
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAV 54 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~ 54 (207)
.++|++. +.+|+||||+.-.|+.
T Consensus 179 ~~~V~lv-G~~naGKSTLln~L~~ 201 (364)
T 2qtf_A 179 IPSIGIV-GYTNSGKTSLFNSLTG 201 (364)
T ss_dssp CCEEEEE-CBTTSSHHHHHHHHHC
T ss_pred CcEEEEE-CCCCCCHHHHHHHHHC
Confidence 4557775 7899999999887753
No 196
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.30 E-value=0.012 Score=42.74 Aligned_cols=36 Identities=31% Similarity=0.301 Sum_probs=26.8
Q ss_pred CCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecC
Q 028600 28 DGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70 (207)
Q Consensus 28 ~~~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d 70 (207)
+..+++|+++ +..|+||||++..||.. .|. .++|+|
T Consensus 12 ~~~~~~I~l~-G~~GsGKsT~~~~L~~~----~g~--~~i~~d 47 (203)
T 1ukz_A 12 PDQVSVIFVL-GGPGAGKGTQCEKLVKD----YSF--VHLSAG 47 (203)
T ss_dssp TTTCEEEEEE-CSTTSSHHHHHHHHHHH----SSC--EEEEHH
T ss_pred CCCCcEEEEE-CCCCCCHHHHHHHHHHH----cCc--eEEeHH
Confidence 3447788885 88899999999998874 353 567766
No 197
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.30 E-value=0.023 Score=45.22 Aligned_cols=41 Identities=17% Similarity=0.130 Sum_probs=32.3
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHh-----CCCeEEEEecCCC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASK-----CQLKVGLLDADVY 72 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~-----~g~~VlliD~d~~ 72 (207)
+.++.+ .+..|+|||+++.++|...+.. .|.+|++||++..
T Consensus 122 G~i~~I-~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~ 167 (343)
T 1v5w_A 122 MAITEA-FGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENT 167 (343)
T ss_dssp SEEEEE-ECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSC
T ss_pred CeEEEE-ECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCC
Confidence 556666 6888999999999999875431 2789999999864
No 198
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=95.30 E-value=0.038 Score=40.54 Aligned_cols=66 Identities=21% Similarity=0.242 Sum_probs=42.0
Q ss_pred CCCCEEEEcCCCCCCcc-----------hhhhhhh---hcCceEEEeeCCchhhHHHHHHHHHHhhhCCCCeeEEEEccc
Q 028600 138 GNLDILVIDMPPGTGDA-----------QLTTTQT---LQLSGALIVSTPQDVALIDARKGITMFSKVQVPVCSFLAQII 203 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~-----------~~~~~~~---~~~d~vi~v~~~~~~~~~~~~~~l~~l~~~~~~~~g~v~N~~ 203 (207)
..+.+.|+|||+ +... ......+ ..+|.+++|++....-.......++.+.+.+.++ -+|+||.
T Consensus 77 ~~~~~~l~DtpG-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~~~p~-i~v~nK~ 154 (223)
T 4dhe_A 77 AEPVAHLVDLPG-YGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPTGKPI-HSLLTKC 154 (223)
T ss_dssp TSCSEEEEECCC-CCSSCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGGGCCCE-EEEEECG
T ss_pred CCCcEEEEcCCC-CCcccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCE-EEEEecc
Confidence 568999999996 3221 1111111 1267799998887533344456677777777776 4889998
Q ss_pred cC
Q 028600 204 SS 205 (207)
Q Consensus 204 ~~ 205 (207)
|.
T Consensus 155 Dl 156 (223)
T 4dhe_A 155 DK 156 (223)
T ss_dssp GG
T ss_pred cc
Confidence 74
No 199
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=95.27 E-value=0.044 Score=37.83 Aligned_cols=66 Identities=12% Similarity=0.079 Sum_probs=41.7
Q ss_pred CCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCch-hhHHHHHHHHHHhhh----CCCCeeEEEEcccc
Q 028600 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDARKGITMFSK----VQVPVCSFLAQIIS 204 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~-~~~~~~~~~l~~l~~----~~~~~~g~v~N~~~ 204 (207)
..+.+.|+|+|+.-.........+..+|.+++|.+... .+...+...+..+.+ .+.++ -+|+|+.|
T Consensus 50 ~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi-ilv~nK~D 120 (168)
T 1u8z_A 50 EEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPF-LLVGNKSD 120 (168)
T ss_dssp EEEEEEEEECCC---CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCE-EEEEECGG
T ss_pred EEEEEEEEECCCcchhHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcE-EEEEECcc
Confidence 45689999999743322333444557899999988764 355555555555443 25565 59999987
No 200
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.27 E-value=0.014 Score=46.12 Aligned_cols=37 Identities=30% Similarity=0.363 Sum_probs=27.5
Q ss_pred CCCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCC
Q 028600 29 GVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (207)
Q Consensus 29 ~~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~ 72 (207)
.++++|.+ .+..|+||||++..||..+ | ..+|++|..
T Consensus 3 ~m~~~i~i-~GptGsGKTtla~~La~~l----~--~~iis~Ds~ 39 (323)
T 3crm_A 3 SLPPAIFL-MGPTAAGKTDLAMALADAL----P--CELISVDSA 39 (323)
T ss_dssp CCCEEEEE-ECCTTSCHHHHHHHHHHHS----C--EEEEEECTT
T ss_pred CCCcEEEE-ECCCCCCHHHHHHHHHHHc----C--CcEEeccch
Confidence 34556666 5889999999999998743 3 578888753
No 201
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.25 E-value=0.014 Score=44.34 Aligned_cols=34 Identities=18% Similarity=0.168 Sum_probs=25.0
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~ 71 (207)
|++|.+ .+..|+||||++..||..+ |. .+++.|.
T Consensus 1 M~li~I-~G~~GSGKSTla~~La~~~----~~--~~i~~D~ 34 (253)
T 2ze6_A 1 MLLHLI-YGPTCSGKTDMAIQIAQET----GW--PVVALDR 34 (253)
T ss_dssp CEEEEE-ECCTTSSHHHHHHHHHHHH----CC--CEEECCS
T ss_pred CeEEEE-ECCCCcCHHHHHHHHHhcC----CC--eEEeccH
Confidence 356666 5889999999999998754 33 4667764
No 202
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=95.24 E-value=0.059 Score=37.88 Aligned_cols=67 Identities=10% Similarity=0.058 Sum_probs=44.8
Q ss_pred CCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCch-hhHHHHHHHHHHhhhC---CCCeeEEEEccccC
Q 028600 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDARKGITMFSKV---QVPVCSFLAQIISS 205 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~-~~~~~~~~~l~~l~~~---~~~~~g~v~N~~~~ 205 (207)
..+.+.|+|+|+.-.........+..+|.+++|.+... .+...+...+..+.+. +.+ +-+|+|+.|-
T Consensus 59 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-~i~v~nK~Dl 129 (181)
T 2efe_B 59 ATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMV-MALAGNKSDL 129 (181)
T ss_dssp EEEEEEEEECCCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCE-EEEEEECTTC
T ss_pred EEEEEEEEeCCCChhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCc-EEEEEECCcc
Confidence 35688999999643322333444557999999988754 4556777777666654 333 4688999884
No 203
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.21 E-value=0.074 Score=37.79 Aligned_cols=67 Identities=12% Similarity=0.031 Sum_probs=44.0
Q ss_pred CCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCchh-hHHHHHHHHHHhhh----CCCCeeEEEEccccC
Q 028600 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDV-ALIDARKGITMFSK----VQVPVCSFLAQIISS 205 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~~-~~~~~~~~l~~l~~----~~~~~~g~v~N~~~~ 205 (207)
..+.+.|+|+|+.-.........+..+|.+++|.+.... ++..+...+..+.+ .+.++ -+|.||.|-
T Consensus 58 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pi-ilv~NK~Dl 129 (187)
T 1zj6_A 58 NNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGL-LIFANKQDV 129 (187)
T ss_dssp TTEEEEEEECCC----CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEE-EEEEECTTS
T ss_pred CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeE-EEEEECCCC
Confidence 357889999997433223334455679999999987654 57777776666654 34444 689999883
No 204
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=95.20 E-value=0.016 Score=40.69 Aligned_cols=33 Identities=24% Similarity=0.310 Sum_probs=24.3
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCC
Q 028600 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (207)
Q Consensus 32 k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~ 71 (207)
++|.+ .+-.|+||||++..||..+ |. -++|.|.
T Consensus 2 ~~i~l-~G~~GsGKsT~~~~L~~~l----~~--~~i~~d~ 34 (173)
T 3kb2_A 2 TLIIL-EGPDCCFKSTVAAKLSKEL----KY--PIIKGSS 34 (173)
T ss_dssp CEEEE-ECSSSSSHHHHHHHHHHHH----CC--CEEECCC
T ss_pred eEEEE-ECCCCCCHHHHHHHHHHHh----CC--eeecCcc
Confidence 45666 5889999999999988755 33 3567664
No 205
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=95.16 E-value=0.23 Score=35.25 Aligned_cols=62 Identities=11% Similarity=0.118 Sum_probs=40.7
Q ss_pred CCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCch-hhHHHHHHHHHHhhhC----CCCeeEEEEccccC
Q 028600 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDARKGITMFSKV----QVPVCSFLAQIISS 205 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~-~~~~~~~~~l~~l~~~----~~~~~g~v~N~~~~ 205 (207)
..+.+.|+|+++.-. +. ....+|.+++|.+... .+...+...+..+.+. +.++ -+|.|+.|-
T Consensus 65 ~~~~l~i~Dt~G~~~---~~--~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi-ilv~nK~Dl 131 (184)
T 3ihw_A 65 QSYLLLIRDEGGPPE---LQ--FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPM-VLVGTQDAI 131 (184)
T ss_dssp EEEEEEEEECSSSCC---HH--HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCE-EEEEECTTC
T ss_pred EEEEEEEEECCCChh---hh--eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCE-EEEEECccc
Confidence 346778899985432 21 3446899998877654 3566666777776653 4455 588899873
No 206
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=95.16 E-value=0.053 Score=39.17 Aligned_cols=66 Identities=11% Similarity=0.120 Sum_probs=43.9
Q ss_pred CCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCc-hhhHHHHHHHHHHhhhC----CCCeeEEEEcccc
Q 028600 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQ-DVALIDARKGITMFSKV----QVPVCSFLAQIIS 204 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~-~~~~~~~~~~l~~l~~~----~~~~~g~v~N~~~ 204 (207)
..+.+.|+|+|+.-.........+..+|.+++|.+.. ..+...+...+..+.+. +.++ -+|.|+.|
T Consensus 70 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi-ilv~nK~D 140 (201)
T 3oes_A 70 DEFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPV-VLVGNKAD 140 (201)
T ss_dssp -CEEEEEEEECCCCTTCCCCGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCE-EEEEECTT
T ss_pred EEEEEEEEECCCccchHHHHHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCE-EEEEECcc
Confidence 5678899999974332233344455789999998866 44566666666666543 4555 58899988
No 207
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=95.14 E-value=0.043 Score=39.59 Aligned_cols=66 Identities=11% Similarity=0.166 Sum_probs=43.5
Q ss_pred CCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCch-hhHHHHHHHHHHhhhC---CCCeeEEEEcccc
Q 028600 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDARKGITMFSKV---QVPVCSFLAQIIS 204 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~-~~~~~~~~~l~~l~~~---~~~~~g~v~N~~~ 204 (207)
..+.+.|+|+|+.-.........+..+|.+|+|.+... .+...+...++.+.+. +.++ -+|+|+.|
T Consensus 75 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~pi-ilv~NK~D 144 (199)
T 2p5s_A 75 ERTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPI-MLVGNKAD 144 (199)
T ss_dssp EEEEEEEEECTTCTTCHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCE-EEEEECGG
T ss_pred EEEEEEEEECCCCcchhhhHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCE-EEEEECcc
Confidence 34678999999754333333444557999999998753 4556666666655543 4555 58999987
No 208
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=95.12 E-value=0.055 Score=41.16 Aligned_cols=20 Identities=55% Similarity=0.793 Sum_probs=15.7
Q ss_pred EEEEEeCCCCCcHHHHHHHHH
Q 028600 33 VIAVASGKGGVGKSTTAVNLA 53 (207)
Q Consensus 33 ~I~v~s~kgG~GkTt~a~~LA 53 (207)
.|++ -+..|+||||+.-.|.
T Consensus 38 ~I~l-vG~~g~GKSSLin~l~ 57 (262)
T 3def_A 38 TVLV-LGKGGVGKSSTVNSLI 57 (262)
T ss_dssp EEEE-EECTTSSHHHHHHHHH
T ss_pred EEEE-ECCCCCCHHHHHHHHh
Confidence 4555 3889999999988775
No 209
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.06 E-value=0.014 Score=41.18 Aligned_cols=34 Identities=38% Similarity=0.565 Sum_probs=25.3
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~ 71 (207)
+.+|.++ +..|+||||++..||..+ |.+ ++|+|.
T Consensus 7 ~~~i~l~-G~~GsGKSTva~~La~~l----g~~--~id~D~ 40 (168)
T 1zuh_A 7 MQHLVLI-GFMGSGKSSLAQELGLAL----KLE--VLDTDM 40 (168)
T ss_dssp -CEEEEE-SCTTSSHHHHHHHHHHHH----TCC--EEEHHH
T ss_pred cceEEEE-CCCCCCHHHHHHHHHHHh----CCC--EEEChH
Confidence 6778885 888999999999988755 444 567764
No 210
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=95.05 E-value=0.037 Score=40.68 Aligned_cols=35 Identities=23% Similarity=0.278 Sum_probs=28.4
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEE
Q 028600 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLL 67 (207)
Q Consensus 30 ~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~Vlli 67 (207)
|++-|+| =+-.|+||||.+..|+..|. +|.+|.+.
T Consensus 1 M~kFI~~-EG~dGsGKsTq~~~L~~~L~--~~~~v~~~ 35 (205)
T 4hlc_A 1 MSAFITF-EGPEGSGKTTVINEVYHRLV--KDYDVIMT 35 (205)
T ss_dssp -CEEEEE-ECCTTSCHHHHHHHHHHHHT--TTSCEEEE
T ss_pred CCCEEEE-ECCCCCcHHHHHHHHHHHHH--CCCCEEEe
Confidence 4677888 47779999999999999995 48888765
No 211
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=95.04 E-value=0.11 Score=36.98 Aligned_cols=67 Identities=16% Similarity=0.245 Sum_probs=44.9
Q ss_pred CCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCch-hhHHHHHHHHHHhhh------CCCCeeEEEEccccC
Q 028600 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDARKGITMFSK------VQVPVCSFLAQIISS 205 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~-~~~~~~~~~l~~l~~------~~~~~~g~v~N~~~~ 205 (207)
..+.+.|+|+|+.-.........+..+|.+++|++... .+...+...+..+.+ .+.++ -+|+||.|-
T Consensus 65 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~pi-ilv~nK~Dl 138 (190)
T 2h57_A 65 SSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPI-LFFANKMDL 138 (190)
T ss_dssp SSCEEEEEEECCSTTTGGGGGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCE-EEEEECTTS
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeE-EEEEeCcCc
Confidence 45789999999743322333444567999999998764 356666666655543 34555 589999884
No 212
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=95.02 E-value=0.057 Score=41.45 Aligned_cols=64 Identities=8% Similarity=0.073 Sum_probs=43.8
Q ss_pred CCCCEEEEcCCCCCCcch----------h--hhhhhhcCceEEEeeCCchhhHHHHHHHHHHhhhCCCCeeEEEEcccc
Q 028600 138 GNLDILVIDMPPGTGDAQ----------L--TTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPVCSFLAQIIS 204 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~----------~--~~~~~~~~d~vi~v~~~~~~~~~~~~~~l~~l~~~~~~~~g~v~N~~~ 204 (207)
.++.+.|+|+|+..+... . .......+|.+++|+++.. .+.......++.+.+.++ -+|+||.|
T Consensus 48 ~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~--~~~~~~~~~~l~~~~~p~-ivv~NK~D 123 (274)
T 3i8s_A 48 TDHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASN--LERNLYLTLQLLELGIPC-IVALNMLD 123 (274)
T ss_dssp SSCEEEEEECCCCSCSCC----CCHHHHHHHHHHHHTCCSEEEEEEEGGG--HHHHHHHHHHHHHHTCCE-EEEEECHH
T ss_pred CCCceEEEECcCCCccccccccCCHHHHHHHHHHhhcCCCEEEEEecCCC--hHHHHHHHHHHHhcCCCE-EEEEECcc
Confidence 456789999997433111 0 0111247999999999876 455566677777778887 58999987
No 213
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=95.01 E-value=0.064 Score=38.20 Aligned_cols=67 Identities=10% Similarity=0.060 Sum_probs=45.2
Q ss_pred CCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCc-hhhHHHHHHHHHHhhhC---CCCeeEEEEccccC
Q 028600 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQ-DVALIDARKGITMFSKV---QVPVCSFLAQIISS 205 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~-~~~~~~~~~~l~~l~~~---~~~~~g~v~N~~~~ 205 (207)
..+.+.|+|+|+.-.........+..+|.+++|.+.. ..+...+...+..+.+. +.++ -+|+||.|-
T Consensus 69 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pi-ilv~nK~Dl 139 (189)
T 2gf9_A 69 KRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQV-ILVGNKCDL 139 (189)
T ss_dssp EEEEEEEEECCSCCSSCCSGGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEE-EEEEECTTC
T ss_pred eEEEEEEEeCCCcHHHhhhHHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCE-EEEEECccc
Confidence 3578899999974332233344555799999998875 34666666666666653 4444 689999883
No 214
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=95.01 E-value=0.027 Score=41.94 Aligned_cols=40 Identities=20% Similarity=0.178 Sum_probs=31.6
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHh-----CCCeEEEEecCC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASK-----CQLKVGLLDADV 71 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~-----~g~~VlliD~d~ 71 (207)
+.++.++ +..|+||||++..+|...+.. .+.+|++++...
T Consensus 24 G~~~~i~-G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 24 GSITEMF-GEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp TSEEEEE-CCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CeEEEEE-CCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 6677774 789999999999999864431 167899999875
No 215
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=94.99 E-value=0.0072 Score=44.30 Aligned_cols=35 Identities=31% Similarity=0.393 Sum_probs=29.3
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEec
Q 028600 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDA 69 (207)
Q Consensus 33 ~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~ 69 (207)
+|+| .+-.|+||||++..|+..+.. .|.+|.++..
T Consensus 2 ~I~i-~G~~GsGKsTl~~~L~~~l~~-~g~~v~~~~~ 36 (214)
T 1gtv_A 2 LIAI-EGVDGAGKRTLVEKLSGAFRA-AGRSVATLAF 36 (214)
T ss_dssp EEEE-EEEEEEEHHHHHHHHHHHHHE-EEEEEEEEES
T ss_pred EEEE-EcCCCCCHHHHHHHHHHHHHh-cCCeEEEEee
Confidence 5666 477899999999999999988 8888887753
No 216
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=94.98 E-value=0.037 Score=39.15 Aligned_cols=34 Identities=32% Similarity=0.532 Sum_probs=26.2
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~ 71 (207)
+++|+++ +..|+||||++..|+..+ | ..++|.|.
T Consensus 8 g~~i~l~-G~~GsGKSTl~~~l~~~~----g--~~~i~~d~ 41 (175)
T 1knq_A 8 HHIYVLM-GVSGSGKSAVASEVAHQL----H--AAFLDGDF 41 (175)
T ss_dssp SEEEEEE-CSTTSCHHHHHHHHHHHH----T--CEEEEGGG
T ss_pred CcEEEEE-cCCCCCHHHHHHHHHHhh----C--cEEEeCcc
Confidence 6778775 888999999999998765 4 35677764
No 217
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=94.98 E-value=0.075 Score=38.19 Aligned_cols=66 Identities=12% Similarity=0.061 Sum_probs=42.3
Q ss_pred CCCCEEEEcCCCCCCcchhh---hhhhhcCceEEEeeCCchh---hHHHHHHHHHHhh--hCCCCeeEEEEcccc
Q 028600 138 GNLDILVIDMPPGTGDAQLT---TTQTLQLSGALIVSTPQDV---ALIDARKGITMFS--KVQVPVCSFLAQIIS 204 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~~~---~~~~~~~d~vi~v~~~~~~---~~~~~~~~l~~l~--~~~~~~~g~v~N~~~ 204 (207)
..+.+.|+|+++.-...... ......+|.+|+|.+.... +...+...+..+. ..+.++ -+|.||.|
T Consensus 67 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~pi-ilv~nK~D 140 (196)
T 3llu_A 67 SFVNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNF-EVFIHKVD 140 (196)
T ss_dssp TSCCEEEEECCSSCCTTCTTCCHHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEE-EEEEECGG
T ss_pred CeeEEEEEECCCCHHHHhhhhhcccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcE-EEEEeccc
Confidence 56899999999643211222 2445579999999988774 4444444455442 224454 58889988
No 218
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=94.96 E-value=0.064 Score=37.95 Aligned_cols=67 Identities=12% Similarity=0.015 Sum_probs=44.3
Q ss_pred CCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCchh-hHHHHHHHHHHhhh----CCCCeeEEEEccccC
Q 028600 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDV-ALIDARKGITMFSK----VQVPVCSFLAQIISS 205 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~~-~~~~~~~~l~~l~~----~~~~~~g~v~N~~~~ 205 (207)
..+.+.|+|+|+.-.........+..+|.+++|.+.... ++..+...+..+.+ .+.+ +-+|+||.|-
T Consensus 63 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~NK~Dl 134 (181)
T 2h17_A 63 NNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAG-LLIFANKQDV 134 (181)
T ss_dssp TTEEEEEEEESSSGGGTCGGGGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCE-EEEEEECTTS
T ss_pred CCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCe-EEEEEECCCc
Confidence 457899999996422222333445579999999887653 56776666655543 3444 4689999883
No 219
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=94.96 E-value=0.03 Score=43.90 Aligned_cols=38 Identities=21% Similarity=0.155 Sum_probs=32.3
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d 70 (207)
++.+.+ .+..|+||||++..++..+.. .|.+++.+++.
T Consensus 37 ~~~lll-~G~~GtGKT~la~~i~~~~~~-~~~~~~~i~~~ 74 (324)
T 1l8q_A 37 YNPIFI-YGSVGTGKTHLLQAAGNEAKK-RGYRVIYSSAD 74 (324)
T ss_dssp CSSEEE-ECSSSSSHHHHHHHHHHHHHH-TTCCEEEEEHH
T ss_pred CCeEEE-ECCCCCcHHHHHHHHHHHHHH-CCCEEEEEEHH
Confidence 445666 477899999999999999998 79999999875
No 220
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=94.93 E-value=0.024 Score=47.67 Aligned_cols=41 Identities=7% Similarity=0.019 Sum_probs=33.4
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHH-hCCCeEEEEecCC
Q 028600 30 VKDVIAVASGKGGVGKSTTAVNLAVALAS-KCQLKVGLLDADV 71 (207)
Q Consensus 30 ~~k~I~v~s~kgG~GkTt~a~~LA~~la~-~~g~~VlliD~d~ 71 (207)
.+.+|.+ .+-.|+||||++..||..|.. .-|+.+-++|.|.
T Consensus 394 ~~~~I~l-~GlsGsGKSTIa~~La~~L~~~~g~r~~~~lDgD~ 435 (511)
T 1g8f_A 394 QGFSIVL-GNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNN 435 (511)
T ss_dssp CCEEEEE-CTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTT
T ss_pred cceEEEe-cccCCCCHHHHHHHHHHHHHHhhcCcceEEecCCC
Confidence 3567777 577899999999999999985 2468888999886
No 221
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=94.91 E-value=0.075 Score=37.02 Aligned_cols=66 Identities=12% Similarity=0.077 Sum_probs=40.4
Q ss_pred CCCEEEEcCCCCCC--cchhhhhhhhcCceEEEeeCCc-hhhHHHHHHHHHHhhhC----CCCeeEEEEccccC
Q 028600 139 NLDILVIDMPPGTG--DAQLTTTQTLQLSGALIVSTPQ-DVALIDARKGITMFSKV----QVPVCSFLAQIISS 205 (207)
Q Consensus 139 ~~D~IiiD~~~~~~--~~~~~~~~~~~~d~vi~v~~~~-~~~~~~~~~~l~~l~~~----~~~~~g~v~N~~~~ 205 (207)
.+.+.++|+|+.-. ...........+|.+++|.+.+ ..+...+...+..+.+. +.++ -+|.||.|-
T Consensus 51 ~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~pi-ilv~NK~Dl 123 (175)
T 2nzj_A 51 DTTLVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPI-ILVGNKADL 123 (175)
T ss_dssp EEEEEEECCC-------CHHHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCE-EEEEECTTC
T ss_pred EEEEEEEecCCCCccchhhhHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCE-EEEEEChhh
Confidence 46788999996432 1122223344588888887765 45667777766666654 5565 589999883
No 222
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.91 E-value=0.048 Score=38.33 Aligned_cols=66 Identities=11% Similarity=0.112 Sum_probs=40.5
Q ss_pred CCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCch-hhHHHHHHHHHHhhh---CCCCeeEEEEccccC
Q 028600 139 NLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDARKGITMFSK---VQVPVCSFLAQIISS 205 (207)
Q Consensus 139 ~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~-~~~~~~~~~l~~l~~---~~~~~~g~v~N~~~~ 205 (207)
.+.+.|+|+|+.-.........+..+|.+++|.+... .+...+...+..+.+ .+.++ -+|+|+.|-
T Consensus 59 ~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pi-ilv~nK~Dl 128 (180)
T 2g6b_A 59 KVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVAL-MLLGNKVDS 128 (180)
T ss_dssp EEEEEEEECCCC--------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEE-EEEEECCST
T ss_pred EEEEEEEeCCCcHHHHHHHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcE-EEEEECccc
Confidence 4678999999743322233344557899999988764 355556666655554 34444 589999883
No 223
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=94.91 E-value=0.099 Score=36.00 Aligned_cols=67 Identities=15% Similarity=0.092 Sum_probs=43.3
Q ss_pred CCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCch-hhHHHHHHHHHHhhhC----CCCeeEEEEccccC
Q 028600 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDARKGITMFSKV----QVPVCSFLAQIISS 205 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~-~~~~~~~~~l~~l~~~----~~~~~g~v~N~~~~ 205 (207)
..+.+.|+|+|+.-.........+..+|.+++|.+... .++..+...+..+.+. +.++ -+|.|+.|-
T Consensus 42 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pi-ilv~nK~Dl 113 (164)
T 1r8s_A 42 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVL-LVFANKQDL 113 (164)
T ss_dssp SSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEE-EEEEECTTS
T ss_pred CCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeE-EEEEECcCC
Confidence 45789999999643322222334557899999988754 3566666666555432 4444 689999873
No 224
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=94.90 E-value=0.041 Score=47.31 Aligned_cols=68 Identities=9% Similarity=0.020 Sum_probs=48.3
Q ss_pred CCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCchhh-------HHHHHHHHHHhhhCCCCeeEEEEccccC
Q 028600 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVA-------LIDARKGITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~~~-------~~~~~~~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
..+.++|+|||+--.........+..+|.+|+|+++.... .....+.+..+...+.+.+-+++||+|.
T Consensus 243 ~~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiDl 317 (611)
T 3izq_1 243 HRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMDN 317 (611)
T ss_dssp SSCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTTT
T ss_pred CCceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEecccc
Confidence 5678999999964332223344455799999999998642 2456667777777787766788999984
No 225
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=94.89 E-value=0.055 Score=38.75 Aligned_cols=67 Identities=10% Similarity=0.013 Sum_probs=44.9
Q ss_pred CCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCch-hhHHHHHHHHHHhhhC---CCCeeEEEEccccC
Q 028600 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDARKGITMFSKV---QVPVCSFLAQIISS 205 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~-~~~~~~~~~l~~l~~~---~~~~~g~v~N~~~~ 205 (207)
..+.+.|+|+|+.-.........+..+|.+++|.+... .+...+...+..+.+. +.+ +-+|+||.|-
T Consensus 70 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~p-iiiv~NK~Dl 140 (192)
T 2fg5_A 70 ELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIV-MAIAGNKCDL 140 (192)
T ss_dssp SEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCE-EEEEEECGGG
T ss_pred EEEEEEEEcCCCchhhHhhhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCc-EEEEEECccc
Confidence 45788999999743322333445567999999988754 4566666666666654 344 4688999873
No 226
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=94.87 E-value=0.026 Score=40.38 Aligned_cols=34 Identities=29% Similarity=0.332 Sum_probs=25.3
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecC
Q 028600 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70 (207)
Q Consensus 30 ~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d 70 (207)
++++|+++ +..|+||||++..||..+ | ..++|.|
T Consensus 5 ~~~~I~l~-G~~GsGKsT~~~~L~~~l----~--~~~i~~d 38 (194)
T 1qf9_A 5 KPNVVFVL-GGPGSGKGTQCANIVRDF----G--WVHLSAG 38 (194)
T ss_dssp CCEEEEEE-ESTTSSHHHHHHHHHHHH----C--CEEEEHH
T ss_pred cCcEEEEE-CCCCCCHHHHHHHHHHHh----C--CeEeeHH
Confidence 45677775 778999999999998755 3 2566765
No 227
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=94.84 E-value=0.037 Score=41.64 Aligned_cols=40 Identities=33% Similarity=0.330 Sum_probs=30.6
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHh----CCCeEEEEecCC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASK----CQLKVGLLDADV 71 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~----~g~~VlliD~d~ 71 (207)
+.+|+++ +..|+||||++..|+..+-.. ..+++.+++.|.
T Consensus 25 g~iigI~-G~~GsGKSTl~k~L~~~lG~~~~~~~~~~i~~v~~d~ 68 (245)
T 2jeo_A 25 PFLIGVS-GGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDR 68 (245)
T ss_dssp SEEEEEE-CSTTSSHHHHHHHHHHHHTGGGSCGGGCSEEEEEGGG
T ss_pred CEEEEEE-CCCCCCHHHHHHHHHHHhchhcccccCCceEEEeCCc
Confidence 6789996 788999999999999877431 135677888774
No 228
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=94.83 E-value=0.033 Score=43.37 Aligned_cols=66 Identities=12% Similarity=0.058 Sum_probs=41.5
Q ss_pred CCCEEEEcCCCCCC-------------cchhhhhhhhcCceEEEeeCCc-hh-hHHHHHHHHHHhhhCCCCeeEEEEccc
Q 028600 139 NLDILVIDMPPGTG-------------DAQLTTTQTLQLSGALIVSTPQ-DV-ALIDARKGITMFSKVQVPVCSFLAQII 203 (207)
Q Consensus 139 ~~D~IiiD~~~~~~-------------~~~~~~~~~~~~d~vi~v~~~~-~~-~~~~~~~~l~~l~~~~~~~~g~v~N~~ 203 (207)
.++++|+|||+... ........+..+|.+++|+++. .. ........++.+...+.++ -+|+||+
T Consensus 130 ~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~~~~~~-i~v~NK~ 208 (315)
T 1jwy_B 130 VVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPEGKRT-IGVITKL 208 (315)
T ss_dssp SCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCSSCSSE-EEEEECT
T ss_pred CCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCCCCCcE-EEEEcCc
Confidence 47999999996432 0112334456789888888752 21 1122345666777667776 5889999
Q ss_pred cC
Q 028600 204 SS 205 (207)
Q Consensus 204 ~~ 205 (207)
|.
T Consensus 209 Dl 210 (315)
T 1jwy_B 209 DL 210 (315)
T ss_dssp TS
T ss_pred cc
Confidence 84
No 229
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=94.83 E-value=0.047 Score=40.76 Aligned_cols=39 Identities=18% Similarity=0.163 Sum_probs=32.1
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHH-HhCCCeEEEEecCC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALA-SKCQLKVGLLDADV 71 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la-~~~g~~VlliD~d~ 71 (207)
+.+++++ +..|+||||++..++.... . .+..+++++.+.
T Consensus 30 G~~~~l~-GpnGsGKSTLl~~i~~~~~~~-~~~~~~~~~~~~ 69 (251)
T 2ehv_A 30 GTTVLLT-GGTGTGKTTFAAQFIYKGAEE-YGEPGVFVTLEE 69 (251)
T ss_dssp TCEEEEE-CCTTSSHHHHHHHHHHHHHHH-HCCCEEEEESSS
T ss_pred CcEEEEE-eCCCCCHHHHHHHHHHHHHHh-CCCeEEEEEccC
Confidence 7788885 7889999999999997665 5 688888888764
No 230
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=94.81 E-value=0.019 Score=44.57 Aligned_cols=35 Identities=23% Similarity=0.274 Sum_probs=25.9
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCC
Q 028600 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (207)
Q Consensus 33 ~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~ 71 (207)
.+.+.++..|+||||++..|+..+ +.....|+.|.
T Consensus 34 ~livl~G~sGsGKSTla~~L~~~~----~~~~~~Is~D~ 68 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLRSAIFEET----QGNVIVIDNDT 68 (287)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHT----TTCCEEECTHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh----CCCeEEEechH
Confidence 445557999999999999998744 23457788764
No 231
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=94.81 E-value=0.032 Score=41.82 Aligned_cols=35 Identities=23% Similarity=0.209 Sum_probs=27.4
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhC----CCeEEEE
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKC----QLKVGLL 67 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~----g~~Vlli 67 (207)
++.|+| .+-.|+||||.+..|+..+.. . |.+|.+.
T Consensus 25 g~~I~~-eG~~GsGKsT~~~~l~~~l~~-~~~~~g~~v~~~ 63 (227)
T 3v9p_A 25 GKFITF-EGIDGAGKTTHLQWFCDRLQE-RLGPAGRHVVVT 63 (227)
T ss_dssp CCEEEE-ECCC---CHHHHHHHHHHHHH-HHGGGTCCEEEE
T ss_pred CeEEEE-ECCCCCCHHHHHHHHHHHHHh-hccccceeeeee
Confidence 567777 588899999999999999998 7 9999654
No 232
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=94.78 E-value=0.054 Score=37.41 Aligned_cols=67 Identities=9% Similarity=0.027 Sum_probs=43.2
Q ss_pred CCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCch-hhHHHHHHHHHHhhh----CCCCeeEEEEccccC
Q 028600 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDARKGITMFSK----VQVPVCSFLAQIISS 205 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~-~~~~~~~~~l~~l~~----~~~~~~g~v~N~~~~ 205 (207)
..+.+.++|+|+...........+..+|.+++|.+... .+...+...++.+.+ .+.++ -+|+|+.|-
T Consensus 49 ~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi-ilv~nK~Dl 120 (167)
T 1c1y_A 49 QQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPM-ILVGNKCDL 120 (167)
T ss_dssp CEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCE-EEEEECTTC
T ss_pred EEEEEEEEECCChHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcE-EEEEECccc
Confidence 45778999999743322333444557899999987654 455555555555443 35565 589999873
No 233
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=94.77 E-value=0.028 Score=40.76 Aligned_cols=35 Identities=20% Similarity=0.293 Sum_probs=26.8
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEec
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDA 69 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~ 69 (207)
++.|+++ +-.|+||||++..||..+ .|.++..++.
T Consensus 4 ~~~I~l~-G~~GsGKsT~~~~L~~~l---~g~~~~~~~~ 38 (204)
T 2v54_A 4 GALIVFE-GLDKSGKTTQCMNIMESI---PANTIKYLNF 38 (204)
T ss_dssp CCEEEEE-CCTTSSHHHHHHHHHHTS---CGGGEEEEES
T ss_pred CcEEEEE-cCCCCCHHHHHHHHHHHH---CCCceEEEec
Confidence 5678885 778999999999998765 2667776653
No 234
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=94.76 E-value=0.048 Score=38.54 Aligned_cols=38 Identities=29% Similarity=0.312 Sum_probs=27.5
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHh------CCCeEEEEec
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASK------CQLKVGLLDA 69 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~------~g~~VlliD~ 69 (207)
.+.+.+ .+..|+|||+++..++..+... .+.++..+++
T Consensus 43 ~~~~ll-~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (195)
T 1jbk_A 43 KNNPVL-IGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDM 86 (195)
T ss_dssp SCEEEE-ECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECH
T ss_pred CCceEE-ECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeH
Confidence 345555 5889999999999999988761 1455555554
No 235
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=94.75 E-value=0.056 Score=37.82 Aligned_cols=67 Identities=10% Similarity=0.033 Sum_probs=43.4
Q ss_pred CCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCch-hhHHHHHHHHHHhhh---CCCCeeEEEEccccC
Q 028600 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDARKGITMFSK---VQVPVCSFLAQIISS 205 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~-~~~~~~~~~l~~l~~---~~~~~~g~v~N~~~~ 205 (207)
..+.+.|+|+|+.-.........+..+|.+++|.+... .+...+...+..+.. .+.++ -+|+|+.|-
T Consensus 62 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi-ilv~nK~Dl 132 (179)
T 1z0f_A 62 QKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVI-ILIGNKADL 132 (179)
T ss_dssp EEEEEEEEECTTGGGTCHHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEE-EEEEECTTC
T ss_pred eEEEEEEEECCCChHhhhhHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcE-EEEEECccc
Confidence 35688999999643222333455567999999988764 355555555555543 34444 688999873
No 236
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=94.74 E-value=0.064 Score=37.09 Aligned_cols=67 Identities=9% Similarity=0.050 Sum_probs=43.2
Q ss_pred CCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCch-hhHHHHHHHHHHhhhCCC--CeeEEEEcccc
Q 028600 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDARKGITMFSKVQV--PVCSFLAQIIS 204 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~-~~~~~~~~~l~~l~~~~~--~~~g~v~N~~~ 204 (207)
..+.+.++|+|+.-.........+..+|.+++|.+... .+...+...+..+.+... ..+-+|.|+.|
T Consensus 53 ~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D 122 (170)
T 1r2q_A 53 TTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKAD 122 (170)
T ss_dssp EEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGG
T ss_pred EEEEEEEEeCCCcHHhhhhhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcc
Confidence 35778999999643322333444557999999988754 456667666666654321 23356679987
No 237
>1w78_A FOLC bifunctional protein; DHFS, dihydrofolate synthase, synthase, ATP-binding, folate biosynthesis, ligase, multifunctional enzyme; HET: KCX PD8 ADP; 1.82A {Escherichia coli} PDB: 1w7k_A*
Probab=94.73 E-value=0.054 Score=44.29 Aligned_cols=35 Identities=34% Similarity=0.378 Sum_probs=31.0
Q ss_pred CCCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEE
Q 028600 29 GVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLL 67 (207)
Q Consensus 29 ~~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~Vlli 67 (207)
...++|+|+++. ||||++.-++..|.. .|++|.++
T Consensus 47 ~~~~vI~VTGTn---GKtTT~~~l~~iL~~-~G~~~g~~ 81 (422)
T 1w78_A 47 PAPFVFTVAGTN---GKGTTCRTLESILMA-AGYKVGVY 81 (422)
T ss_dssp CSSEEEEEECSS---CHHHHHHHHHHHHHH-TTCCEEEE
T ss_pred cCCcEEEEeCCc---ChHHHHHHHHHHHHH-CCCCEEEE
Confidence 447899998765 999999999999999 99999876
No 238
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=94.73 E-value=0.02 Score=44.97 Aligned_cols=41 Identities=22% Similarity=0.212 Sum_probs=31.6
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHH-----------hCC----CeEEEEecCCC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALAS-----------KCQ----LKVGLLDADVY 72 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~-----------~~g----~~VlliD~d~~ 72 (207)
+.++.+ .+.+|+|||+++.++|...+. ..| .+|++||++-.
T Consensus 98 g~i~~i-~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~ 153 (322)
T 2i1q_A 98 QSVTEF-AGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGT 153 (322)
T ss_dssp TEEEEE-EESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSC
T ss_pred CeEEEE-ECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCC
Confidence 556666 577999999999999987432 145 79999998864
No 239
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=94.72 E-value=0.017 Score=41.72 Aligned_cols=33 Identities=24% Similarity=0.315 Sum_probs=25.3
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d 70 (207)
+++|+++ +..|+||||++..||..+. ..++|.|
T Consensus 12 ~~~I~l~-G~~GsGKsT~a~~L~~~l~------~~~i~~d 44 (199)
T 2bwj_A 12 CKIIFII-GGPGSGKGTQCEKLVEKYG------FTHLSTG 44 (199)
T ss_dssp SCEEEEE-ECTTSSHHHHHHHHHHHHT------CEEEEHH
T ss_pred CCEEEEE-CCCCCCHHHHHHHHHHHhC------CeEEcHH
Confidence 5677774 7789999999999988653 3567765
No 240
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=94.69 E-value=0.052 Score=39.60 Aligned_cols=33 Identities=39% Similarity=0.300 Sum_probs=28.7
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEe
Q 028600 34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLD 68 (207)
Q Consensus 34 I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD 68 (207)
|+| -+--|+||||.+..|+..|.+ .|.+|.+..
T Consensus 3 I~~-EG~DGsGKsTq~~~L~~~L~~-~g~~v~~tr 35 (197)
T 3hjn_A 3 ITF-EGIDGSGKSTQIQLLAQYLEK-RGKKVILKR 35 (197)
T ss_dssp EEE-ECSTTSSHHHHHHHHHHHHHH-TTCCEEEEE
T ss_pred EEE-ECCCCCCHHHHHHHHHHHHHH-CCCcEEEEE
Confidence 455 577899999999999999999 999998764
No 241
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=94.68 E-value=0.076 Score=41.69 Aligned_cols=35 Identities=29% Similarity=0.376 Sum_probs=26.5
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~ 72 (207)
+++|.| ++..|+||||++..||..+ ..-+|.+|..
T Consensus 10 ~~~i~i-~GptgsGKt~la~~La~~~------~~~iis~Ds~ 44 (316)
T 3foz_A 10 PKAIFL-MGPTASGKTALAIELRKIL------PVELISVDSA 44 (316)
T ss_dssp CEEEEE-ECCTTSCHHHHHHHHHHHS------CEEEEECCTT
T ss_pred CcEEEE-ECCCccCHHHHHHHHHHhC------CCcEEecccc
Confidence 556665 6888999999999998753 2467888853
No 242
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=94.68 E-value=0.059 Score=38.23 Aligned_cols=66 Identities=12% Similarity=0.086 Sum_probs=44.5
Q ss_pred CCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCc-hhhHHHHHHHHHHhhh----CCCCeeEEEEccccC
Q 028600 139 NLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQ-DVALIDARKGITMFSK----VQVPVCSFLAQIISS 205 (207)
Q Consensus 139 ~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~-~~~~~~~~~~l~~l~~----~~~~~~g~v~N~~~~ 205 (207)
.+.+.|+|+|+.-.........+..+|.+++|.+.. ..+...+...++.+.. .+.++ -+|+|+.|-
T Consensus 69 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi-ilv~nK~Dl 139 (195)
T 3bc1_A 69 RIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDI-VLCGNKSDL 139 (195)
T ss_dssp EEEEEEEEECCSGGGHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCE-EEEEECTTC
T ss_pred EEEEEEEeCCCcHHHHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCE-EEEEECccc
Confidence 578999999964332233344555799999999875 4456666666666654 34555 689999873
No 243
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=94.67 E-value=0.025 Score=40.55 Aligned_cols=35 Identities=26% Similarity=0.279 Sum_probs=25.4
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~ 71 (207)
++.|.++ +..|+||||++..||..+ .| ..++|+|.
T Consensus 10 ~~~I~l~-G~~GsGKSTv~~~La~~l---~g--~~~id~d~ 44 (184)
T 1y63_A 10 GINILIT-GTPGTGKTSMAEMIAAEL---DG--FQHLEVGK 44 (184)
T ss_dssp SCEEEEE-CSTTSSHHHHHHHHHHHS---TT--EEEEEHHH
T ss_pred CCEEEEE-CCCCCCHHHHHHHHHHhc---CC--CEEeeHHH
Confidence 5677774 789999999998888742 13 45677763
No 244
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=94.66 E-value=0.049 Score=41.00 Aligned_cols=39 Identities=21% Similarity=0.205 Sum_probs=30.6
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~ 71 (207)
++.|+|. +-.|+||||.+..|+..+.. .|.++.++--.+
T Consensus 27 ~~~i~~e-G~~GsGKsT~~~~l~~~l~~-~~~~~~~~~rep 65 (236)
T 3lv8_A 27 AKFIVIE-GLEGAGKSTAIQVVVETLQQ-NGIDHITRTREP 65 (236)
T ss_dssp CCEEEEE-ESTTSCHHHHHHHHHHHHHH-TTCCCEEEEESS
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHHHh-cCCCeeeeecCC
Confidence 5678885 67789999999999999999 999933333344
No 245
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=94.64 E-value=0.83 Score=36.45 Aligned_cols=37 Identities=24% Similarity=0.324 Sum_probs=28.9
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEe
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLD 68 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD 68 (207)
+..++| .+..|+||||+...|+..+....|.+++.++
T Consensus 123 ~g~i~I-~GptGSGKTTlL~~l~g~~~~~~~~~i~t~e 159 (356)
T 3jvv_A 123 RGLVLV-TGPTGSGKSTTLAAMLDYLNNTKYHHILTIE 159 (356)
T ss_dssp SEEEEE-ECSTTSCHHHHHHHHHHHHHHHCCCEEEEEE
T ss_pred CCEEEE-ECCCCCCHHHHHHHHHhcccCCCCcEEEEcc
Confidence 446666 5888999999999999998873477776665
No 246
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=94.63 E-value=0.048 Score=40.72 Aligned_cols=45 Identities=24% Similarity=0.203 Sum_probs=34.6
Q ss_pred CCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCC
Q 028600 28 DGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (207)
Q Consensus 28 ~~~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~ 73 (207)
...++.|+| .+-.|+||||++..|+..+....|.+|.++.-.|.+
T Consensus 18 ~~~~~~i~~-~G~~g~GKst~~~~l~~~l~~~~g~~v~~~treP~~ 62 (223)
T 3ld9_A 18 GPGSMFITF-EGIDGSGKTTQSHLLAEYLSEIYGVNNVVLTREPGG 62 (223)
T ss_dssp -CCCEEEEE-ECSTTSSHHHHHHHHHHHHHHHHCGGGEEEEESSCS
T ss_pred CCCCeEEEE-ECCCCCCHHHHHHHHHHHHhhccCceeeEeeeCCCC
Confidence 344778888 577899999999999999976358888875555543
No 247
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=94.62 E-value=0.047 Score=42.32 Aligned_cols=39 Identities=28% Similarity=0.294 Sum_probs=32.7
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCC
Q 028600 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (207)
Q Consensus 33 ~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~ 73 (207)
.+.+ .+..|+|||+++..+|..+.. .+.++..+|+....
T Consensus 49 ~~ll-~G~~GtGKt~la~~la~~~~~-~~~~~~~~~~~~~~ 87 (311)
T 4fcw_A 49 SFLF-LGPTGVGKTELAKTLAATLFD-TEEAMIRIDMTEYM 87 (311)
T ss_dssp EEEE-ESCSSSSHHHHHHHHHHHHHS-CGGGEEEEEGGGCC
T ss_pred EEEE-ECCCCcCHHHHHHHHHHHHcC-CCcceEEeeccccc
Confidence 4555 578999999999999999988 78889999987543
No 248
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=94.62 E-value=0.075 Score=37.97 Aligned_cols=67 Identities=10% Similarity=0.074 Sum_probs=43.7
Q ss_pred CCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCch-hhHHHHH-HHHHHhhhC--CCCeeEEEEccccC
Q 028600 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDAR-KGITMFSKV--QVPVCSFLAQIISS 205 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~-~~~~~~~-~~l~~l~~~--~~~~~g~v~N~~~~ 205 (207)
..+.+.|+|+|+.-.........+..+|.+++|.+... .+...+. ..+..+.+. +.++ -+|.|+.|-
T Consensus 64 ~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi-ilv~nK~Dl 134 (194)
T 2atx_A 64 KQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPF-LLIGTQIDL 134 (194)
T ss_dssp CEEEEEEECCCCSSSSTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCE-EEEEECTTS
T ss_pred EEEEEEEEECCCCcchhHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCE-EEEEEChhh
Confidence 34678999999643322333344557999999988754 3566665 456666654 5665 589999873
No 249
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=94.58 E-value=0.033 Score=46.32 Aligned_cols=68 Identities=9% Similarity=0.066 Sum_probs=43.2
Q ss_pred CCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCchhhH-------HHHHHHHHHhhhCCCCeeEEEEccccC
Q 028600 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVAL-------IDARKGITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~~~~-------~~~~~~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
..+.+.|+|||+--.........+..+|.+|+|+++....+ ....+.+..+...+++.+-+++||.|.
T Consensus 119 ~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl 193 (467)
T 1r5b_A 119 EHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDE 193 (467)
T ss_dssp SSEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTS
T ss_pred CCeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccC
Confidence 45779999999632211222333457999999999876432 255566666777788755689999984
No 250
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=94.58 E-value=0.031 Score=40.07 Aligned_cols=25 Identities=36% Similarity=0.505 Sum_probs=20.4
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHH
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVAL 56 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~l 56 (207)
++.|.+ .+-.|+||||++..||..+
T Consensus 5 ~~~I~l-~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIV-TGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEE-EESTTSSHHHHHHHHHHHH
T ss_pred CeEEEE-ECCCCCCHHHHHHHHHHHc
Confidence 556666 5788999999999998865
No 251
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=94.57 E-value=0.056 Score=40.01 Aligned_cols=38 Identities=18% Similarity=0.277 Sum_probs=30.2
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCC-eEEEEecCC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQL-KVGLLDADV 71 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~-~VlliD~d~ 71 (207)
++.|+|. +-.|+||||.+..|+..|.. .|. .|.+. -.|
T Consensus 3 g~~i~~e-G~~gsGKsT~~~~l~~~l~~-~~~~~v~~~-rep 41 (213)
T 4tmk_A 3 SKYIVIE-GLEGAGKTTARNVVVETLEQ-LGIRDMVFT-REP 41 (213)
T ss_dssp CCEEEEE-ECTTSCHHHHHHHHHHHHHH-TTCCCEEEE-ESS
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHHHH-cCCCcceee-eCC
Confidence 5778885 77799999999999999999 898 66433 344
No 252
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=94.52 E-value=0.029 Score=40.79 Aligned_cols=35 Identities=34% Similarity=0.366 Sum_probs=26.6
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~ 72 (207)
-.+|+++ +..|+||||++..||..+ | ..+||+|..
T Consensus 12 ~~iIglt-G~~GSGKSTva~~L~~~l----g--~~vid~D~~ 46 (192)
T 2grj_A 12 HMVIGVT-GKIGTGKSTVCEILKNKY----G--AHVVNVDRI 46 (192)
T ss_dssp EEEEEEE-CSTTSSHHHHHHHHHHHH----C--CEEEEHHHH
T ss_pred ceEEEEE-CCCCCCHHHHHHHHHHhc----C--CEEEECcHH
Confidence 3577775 778999999999888743 5 467888854
No 253
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=94.51 E-value=0.072 Score=41.82 Aligned_cols=42 Identities=43% Similarity=0.380 Sum_probs=33.3
Q ss_pred CCCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCC-CeEEEEecCC
Q 028600 29 GVKDVIAVASGKGGVGKSTTAVNLAVALASKCQ-LKVGLLDADV 71 (207)
Q Consensus 29 ~~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g-~~VlliD~d~ 71 (207)
+.+.+|++. +..|+||||++..|+..+....| .++.+|-.|.
T Consensus 88 ~~g~ivgI~-G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~ 130 (312)
T 3aez_A 88 PVPFIIGVA-GSVAVGKSTTARVLQALLARWDHHPRVDLVTTDG 130 (312)
T ss_dssp CCCEEEEEE-CCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGG
T ss_pred CCCEEEEEE-CCCCchHHHHHHHHHhhccccCCCCeEEEEecCc
Confidence 347888885 88899999999999999876335 5788887764
No 254
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=94.49 E-value=0.038 Score=49.36 Aligned_cols=67 Identities=13% Similarity=0.103 Sum_probs=48.7
Q ss_pred CCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCchhhHHHHHHHHHHhhhCCCCeeEEEEccccC
Q 028600 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~~~~~~~~~~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
..+.+.|+|||+-..........+..+|.+|+|++............+.++.+.+.++ -+++||.|.
T Consensus 96 ~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~-ilviNK~D~ 162 (842)
T 1n0u_A 96 NSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKP-VVVINKVDR 162 (842)
T ss_dssp SEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHHHTTCEE-EEEEECHHH
T ss_pred CCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCe-EEEEECCCc
Confidence 4688999999975443334455667899999999987754445556666666777777 489999874
No 255
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=94.48 E-value=0.055 Score=38.63 Aligned_cols=66 Identities=9% Similarity=0.116 Sum_probs=43.3
Q ss_pred CCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCch-hhHHHHHHHHHHhhhC---CCCeeEEEEccccC
Q 028600 139 NLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDARKGITMFSKV---QVPVCSFLAQIISS 205 (207)
Q Consensus 139 ~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~-~~~~~~~~~l~~l~~~---~~~~~g~v~N~~~~ 205 (207)
.+.+.|+|+|+.-.........+..+|.+++|.+... .+...+...+..+.+. +.++ -+|.|+.|-
T Consensus 64 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~-ilv~nK~Dl 133 (196)
T 3tkl_A 64 TIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNK-LLVGNKCDL 133 (196)
T ss_dssp EEEEEEEEECCSGGGCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEE-EEEEECTTC
T ss_pred EEEEEEEECCCcHhhhhhHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCE-EEEEECccc
Confidence 4688999999743222333445567999999988664 3555666666655543 4444 588899883
No 256
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=94.48 E-value=0.073 Score=37.94 Aligned_cols=67 Identities=13% Similarity=0.130 Sum_probs=44.1
Q ss_pred CCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCch-hhHHHHHHHHHHhhh----CCCCeeEEEEccccC
Q 028600 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDARKGITMFSK----VQVPVCSFLAQIISS 205 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~-~~~~~~~~~l~~l~~----~~~~~~g~v~N~~~~ 205 (207)
..+.+.|+|+|+...........+..+|.+++|.+... .++..+...+..+.+ .+.++ -+|+||.|-
T Consensus 65 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~pi-ilv~NK~Dl 136 (188)
T 1zd9_A 65 GNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPV-LVLGNKRDL 136 (188)
T ss_dssp TTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCE-EEEEECTTS
T ss_pred CCEEEEEEECCCCHhHHHHHHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCE-EEEEECCCC
Confidence 56789999999642212222344557999999998764 466666666555543 35555 589999883
No 257
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=94.48 E-value=0.031 Score=47.99 Aligned_cols=67 Identities=13% Similarity=0.061 Sum_probs=44.7
Q ss_pred CCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCchhhHHHHHHHHHHhhhCCCCeeEEEEccccC
Q 028600 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~~~~~~~~~~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
..|.+.|+|||+-..........+..+|.+++|+++......+....+......+.++ -+++||.|.
T Consensus 69 ~~~~l~liDTPGh~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~~~ipi-IvViNKiDl 135 (599)
T 3cb4_D 69 ETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAMEMDLEV-VPVLNKIDL 135 (599)
T ss_dssp CEEEEEEEECCCCGGGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHHTTCEE-EEEEECTTS
T ss_pred CeEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCE-EEeeeccCc
Confidence 4588999999964332222344566799999999986643334444455555667775 589999984
No 258
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=94.46 E-value=0.047 Score=39.84 Aligned_cols=39 Identities=41% Similarity=0.454 Sum_probs=30.8
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCC
Q 028600 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (207)
Q Consensus 30 ~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~ 73 (207)
.+.+|+++ +..|+||||++..|+..+.. ++.+++.|...
T Consensus 5 ~~~~i~i~-G~~GsGKSTl~~~l~~~~~~----~i~~v~~d~~~ 43 (211)
T 3asz_A 5 KPFVIGIA-GGTASGKTTLAQALARTLGE----RVALLPMDHYY 43 (211)
T ss_dssp CCEEEEEE-ESTTSSHHHHHHHHHHHHGG----GEEEEEGGGCB
T ss_pred CcEEEEEE-CCCCCCHHHHHHHHHHHhCC----CeEEEecCccc
Confidence 36789996 55699999999999887643 58899888644
No 259
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=94.44 E-value=0.034 Score=42.94 Aligned_cols=36 Identities=28% Similarity=0.313 Sum_probs=26.8
Q ss_pred CCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCC
Q 028600 28 DGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (207)
Q Consensus 28 ~~~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~ 71 (207)
++.+++|+++ +..|+||||++..|+. .|. -+||+|.
T Consensus 72 ~~~~~iI~I~-G~~GSGKSTva~~La~-----lg~--~~id~D~ 107 (281)
T 2f6r_A 72 PSGLYVLGLT-GISGSGKSSVAQRLKN-----LGA--YIIDSDH 107 (281)
T ss_dssp CTTCEEEEEE-ECTTSCHHHHHHHHHH-----HTC--EEEEHHH
T ss_pred CCCCEEEEEE-CCCCCCHHHHHHHHHH-----CCC--cEEehhH
Confidence 4457788885 7789999999999983 354 4578764
No 260
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=94.42 E-value=0.067 Score=38.65 Aligned_cols=67 Identities=10% Similarity=0.080 Sum_probs=42.6
Q ss_pred CCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCch-hhHHHH-HHHHHHhhhC--CCCeeEEEEccccC
Q 028600 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDA-RKGITMFSKV--QVPVCSFLAQIISS 205 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~-~~~~~~-~~~l~~l~~~--~~~~~g~v~N~~~~ 205 (207)
..+.+.|+|+|+.-.........+..+|.+++|.+.+. .+...+ ...++.+.+. +.++ -+|+||.|-
T Consensus 71 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi-ilv~nK~Dl 141 (201)
T 2gco_A 71 KQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPI-ILVGNKKDL 141 (201)
T ss_dssp EEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCE-EEEEECGGG
T ss_pred EEEEEEEEECCCchhHHHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCE-EEEEecHHh
Confidence 35788999999642222222334457899999987654 356655 4455555543 5665 599999873
No 261
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=94.42 E-value=0.052 Score=38.79 Aligned_cols=66 Identities=9% Similarity=0.054 Sum_probs=43.3
Q ss_pred CCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCch-hhHHHHHHHHHHhhhC---CCCeeEEEEccccC
Q 028600 139 NLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDARKGITMFSKV---QVPVCSFLAQIISS 205 (207)
Q Consensus 139 ~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~-~~~~~~~~~l~~l~~~---~~~~~g~v~N~~~~ 205 (207)
.+.+.|+|+|+.-.........+..+|.+++|.+... .+...+...+..+.+. +.++ -+|.||.|-
T Consensus 69 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~pi-ilv~nK~Dl 138 (191)
T 2a5j_A 69 QIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVI-MLIGNKSDL 138 (191)
T ss_dssp EEEEEEECCTTGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEE-EEEEECTTC
T ss_pred EEEEEEEECCCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCE-EEEEECccc
Confidence 4678999999642211223445557999999988754 4566666666666543 4444 588999883
No 262
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=94.41 E-value=0.077 Score=38.21 Aligned_cols=67 Identities=9% Similarity=0.032 Sum_probs=44.3
Q ss_pred CCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCch-hhHHHHHHHHHHhhhC---CCCeeEEEEccccC
Q 028600 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDARKGITMFSKV---QVPVCSFLAQIISS 205 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~-~~~~~~~~~l~~l~~~---~~~~~g~v~N~~~~ 205 (207)
..+.+.|+|+|+.-.........+..+|.+++|.+... .+...+...+..+... +.++ -+|+|+.|-
T Consensus 55 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pi-ilv~nK~Dl 125 (203)
T 1zbd_A 55 KRIKLQIWDTAGLERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQV-LLVGNKCDM 125 (203)
T ss_dssp EEEEEEEEEECCSGGGHHHHHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEE-EEEEECTTC
T ss_pred eEEEEEEEECCCchhhcchHHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCE-EEEEECccc
Confidence 35678999999643222233444557999999988754 4566666666666653 4454 589999873
No 263
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=94.41 E-value=0.064 Score=42.84 Aligned_cols=66 Identities=15% Similarity=0.085 Sum_probs=43.6
Q ss_pred CCCEEEEcCCCCCCc-------------chhhhhhhhcCceEEEeeCCch--hhHHHHHHHHHHhhhCCCCeeEEEEccc
Q 028600 139 NLDILVIDMPPGTGD-------------AQLTTTQTLQLSGALIVSTPQD--VALIDARKGITMFSKVQVPVCSFLAQII 203 (207)
Q Consensus 139 ~~D~IiiD~~~~~~~-------------~~~~~~~~~~~d~vi~v~~~~~--~~~~~~~~~l~~l~~~~~~~~g~v~N~~ 203 (207)
..++.|+|+|+.... .......+..+|.+|+++++.. .........+..+...+.++ -+|+|+.
T Consensus 135 ~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~~~l~~~~~~~~~~~-i~V~nK~ 213 (360)
T 3t34_A 135 VVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPSGDRT-FGVLTKI 213 (360)
T ss_dssp SCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCHHHHHHHHSCTTCTTE-EEEEECG
T ss_pred CCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHHHHHHHHHhcccCCCE-EEEEeCC
Confidence 568999999963331 2334455667998888876532 22344556667776667776 4789998
Q ss_pred cC
Q 028600 204 SS 205 (207)
Q Consensus 204 ~~ 205 (207)
|.
T Consensus 214 Dl 215 (360)
T 3t34_A 214 DL 215 (360)
T ss_dssp GG
T ss_pred cc
Confidence 73
No 264
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=94.40 E-value=0.022 Score=43.24 Aligned_cols=38 Identities=24% Similarity=0.339 Sum_probs=28.4
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCC
Q 028600 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (207)
Q Consensus 30 ~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~ 72 (207)
.+++|.+ .+.+|+||||++..|+..+ +..+.++|.|.-
T Consensus 31 ~~~~i~l-~G~~GsGKSTla~~L~~~l----~~~~~~~~~D~~ 68 (253)
T 2p5t_B 31 QPIAILL-GGQSGAGKTTIHRIKQKEF----QGNIVIIDGDSF 68 (253)
T ss_dssp SCEEEEE-ESCGGGTTHHHHHHHHHHT----TTCCEEECGGGG
T ss_pred CCeEEEE-ECCCCCCHHHHHHHHHHhc----CCCcEEEecHHH
Confidence 3556666 6889999999999988754 445678888854
No 265
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=94.40 E-value=0.036 Score=39.17 Aligned_cols=35 Identities=29% Similarity=0.239 Sum_probs=24.9
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~ 71 (207)
+++|.+ .+.+|+||||++..|+.. . .| ..+++.|.
T Consensus 2 ~~~I~i-~G~~GsGKST~a~~L~~~--~-~~--~~~i~~d~ 36 (181)
T 1ly1_A 2 KKIILT-IGCPGSGKSTWAREFIAK--N-PG--FYNINRDD 36 (181)
T ss_dssp CEEEEE-ECCTTSSHHHHHHHHHHH--S-TT--EEEECHHH
T ss_pred CeEEEE-ecCCCCCHHHHHHHHHhh--c-CC--cEEecHHH
Confidence 445655 688999999999998872 2 33 56776653
No 266
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=94.38 E-value=0.02 Score=47.76 Aligned_cols=67 Identities=13% Similarity=0.201 Sum_probs=46.5
Q ss_pred CCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCchhhHHHHHHHHHHhhhCCCCeeEEEEccccC
Q 028600 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~~~~~~~~~~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
..+.+.|+|+|+--.........+..+|.+++|+++...-.....+.+..++..+++. -+++||.|.
T Consensus 71 ~~~~i~iiDtPGh~~~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~ip~-IvviNK~Dl 137 (482)
T 1wb1_A 71 ENYRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPI-IVVITKSDN 137 (482)
T ss_dssp TTEEEEECCCSSHHHHHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCCB-CEEEECTTS
T ss_pred CCEEEEEEECCChHHHHHHHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHHcCCCE-EEEEECCCc
Confidence 3578999999953111122234455789999999987644455666666777788888 689999884
No 267
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=94.35 E-value=0.024 Score=41.19 Aligned_cols=32 Identities=41% Similarity=0.445 Sum_probs=23.6
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCC
Q 028600 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (207)
Q Consensus 32 k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~ 71 (207)
++|+++ +..|+||||++..||. + | +.++|+|.
T Consensus 2 ~~i~i~-G~~GsGKSTl~~~L~~-~----g--~~~i~~d~ 33 (204)
T 2if2_A 2 KRIGLT-GNIGCGKSTVAQMFRE-L----G--AYVLDADK 33 (204)
T ss_dssp CEEEEE-ECTTSSHHHHHHHHHH-T----T--CEEEEHHH
T ss_pred eEEEEE-CCCCcCHHHHHHHHHH-C----C--CEEEEccH
Confidence 567885 6789999999888876 3 5 45566664
No 268
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.34 E-value=0.1 Score=36.08 Aligned_cols=66 Identities=15% Similarity=0.133 Sum_probs=43.3
Q ss_pred CCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCchh-hHHHHHHHHHHhhhC---CCCeeEEEEcccc
Q 028600 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDV-ALIDARKGITMFSKV---QVPVCSFLAQIIS 204 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~~-~~~~~~~~l~~l~~~---~~~~~g~v~N~~~ 204 (207)
..+.+.++|+|+...........+..+|.+++|.+.... +...+...+..+.+. +.+ +-+|.|+.|
T Consensus 50 ~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iilv~nK~D 119 (170)
T 1ek0_A 50 HTVKFEIWDTAGQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDII-IALVGNKID 119 (170)
T ss_dssp EEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCE-EEEEEECGG
T ss_pred EEEEEEEEECCCChhhhhhhhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCCc-EEEEEECCC
Confidence 346789999996433223334455679999999887643 566666666665533 344 458889987
No 269
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=94.33 E-value=0.048 Score=39.55 Aligned_cols=36 Identities=31% Similarity=0.414 Sum_probs=25.8
Q ss_pred CCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecC
Q 028600 28 DGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70 (207)
Q Consensus 28 ~~~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d 70 (207)
+..+..|.+ .+..|+||||++..||..+ |.. ++|+|
T Consensus 17 ~~~~~~I~l-~G~~GsGKST~a~~La~~l----~~~--~i~~d 52 (201)
T 2cdn_A 17 RGSHMRVLL-LGPPGAGKGTQAVKLAEKL----GIP--QISTG 52 (201)
T ss_dssp CCSCCEEEE-ECCTTSSHHHHHHHHHHHH----TCC--EEEHH
T ss_pred CCCCeEEEE-ECCCCCCHHHHHHHHHHHh----CCc--EEehh
Confidence 344556777 5889999999999998866 434 56654
No 270
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=94.32 E-value=0.036 Score=39.83 Aligned_cols=33 Identities=24% Similarity=0.349 Sum_probs=25.2
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d 70 (207)
+++|+++ +..|+||||++..||..+ |. .++|.|
T Consensus 9 ~~~I~l~-G~~GsGKsT~~~~La~~l----~~--~~i~~d 41 (196)
T 2c95_A 9 TNIIFVV-GGPGSGKGTQCEKIVQKY----GY--THLSTG 41 (196)
T ss_dssp SCEEEEE-ECTTSSHHHHHHHHHHHH----CC--EEEEHH
T ss_pred CCEEEEE-CCCCCCHHHHHHHHHHHh----CC--eEEcHH
Confidence 5678885 778999999999998865 33 366665
No 271
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=94.31 E-value=0.061 Score=45.91 Aligned_cols=33 Identities=42% Similarity=0.496 Sum_probs=29.3
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEE
Q 028600 34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLL 67 (207)
Q Consensus 34 I~v~s~kgG~GkTt~a~~LA~~la~~~g~~Vlli 67 (207)
+.+..+-+|+||||++..++..+.. .|.+|+++
T Consensus 206 ~~~I~G~pGTGKTt~i~~l~~~l~~-~g~~Vl~~ 238 (574)
T 3e1s_A 206 LVVLTGGPGTGKSTTTKAVADLAES-LGLEVGLC 238 (574)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHH-TTCCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh-cCCeEEEe
Confidence 4444689999999999999999999 99999988
No 272
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=94.29 E-value=0.061 Score=42.32 Aligned_cols=35 Identities=31% Similarity=0.477 Sum_probs=26.2
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~ 72 (207)
+++|+| ++-.|+||||++..||..+ ...+|.+|..
T Consensus 3 ~~~i~i-~GptgsGKt~la~~La~~~------~~~iis~Ds~ 37 (322)
T 3exa_A 3 EKLVAI-VGPTAVGKTKTSVMLAKRL------NGEVISGDSM 37 (322)
T ss_dssp CEEEEE-ECCTTSCHHHHHHHHHHTT------TEEEEECCGG
T ss_pred CcEEEE-ECCCcCCHHHHHHHHHHhC------ccceeecCcc
Confidence 456665 6888999999999998744 3478888843
No 273
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=94.29 E-value=0.095 Score=36.81 Aligned_cols=66 Identities=9% Similarity=0.087 Sum_probs=40.0
Q ss_pred CCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCc-hhhHHHHH-HHHHHhhhC--CCCeeEEEEcccc
Q 028600 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQ-DVALIDAR-KGITMFSKV--QVPVCSFLAQIIS 204 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~-~~~~~~~~-~~l~~l~~~--~~~~~g~v~N~~~ 204 (207)
..+.+.|+|+|+.-.........+..+|.+++|.+.. ..+...+. ..++.+.+. +.++ -+|.|+.|
T Consensus 54 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi-ilv~nK~D 123 (182)
T 3bwd_D 54 ATVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPI-VLVGTKLD 123 (182)
T ss_dssp ----CEEECCCC-CTTTTTGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCE-EEEEECHH
T ss_pred EEEEEEEEECCCChhhhhhHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCE-EEEEechh
Confidence 4567789999964332233344455789999999875 44566665 455666543 4555 58899987
No 274
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=94.27 E-value=0.092 Score=37.96 Aligned_cols=66 Identities=9% Similarity=0.080 Sum_probs=43.7
Q ss_pred CCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCch-hhHHHHHHHHHHhhhC---CCCeeEEEEccccC
Q 028600 139 NLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDARKGITMFSKV---QVPVCSFLAQIISS 205 (207)
Q Consensus 139 ~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~-~~~~~~~~~l~~l~~~---~~~~~g~v~N~~~~ 205 (207)
.+.+.|+|+|+.-.........+..+|.+|+|.+... .+...+...++.+.+. +.++ -+|.||.|-
T Consensus 77 ~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~pi-ilv~NK~Dl 146 (201)
T 2hup_A 77 RVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQ-LLIGNKSDL 146 (201)
T ss_dssp EEEEEEECCTTCGGGHHHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEE-EEEEECTTC
T ss_pred EEEEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCE-EEEEECCcc
Confidence 4788999999643322333444557999999998754 4666666666666542 3444 588899883
No 275
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=94.26 E-value=0.05 Score=39.28 Aligned_cols=67 Identities=10% Similarity=-0.020 Sum_probs=41.8
Q ss_pred CCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCch-hhHHHHHHHHHHhhh-------CCCCeeEEEEccccC
Q 028600 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDARKGITMFSK-------VQVPVCSFLAQIISS 205 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~-~~~~~~~~~l~~l~~-------~~~~~~g~v~N~~~~ 205 (207)
..+.+.|+|+|+.-.........+..+|.+|+|.+... .+...+...+..+.. .+.++ -+|+|+.|-
T Consensus 55 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~pi-ilv~nK~Dl 129 (207)
T 1vg8_A 55 RLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPF-VVLGNKIDL 129 (207)
T ss_dssp CEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCE-EEEEECTTS
T ss_pred EEEEEEEEeCCCcHHHHHhHHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcE-EEEEECCCC
Confidence 45789999999642221222344557999999998754 355555555544432 24455 589999884
No 276
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=94.26 E-value=0.087 Score=36.48 Aligned_cols=66 Identities=6% Similarity=0.083 Sum_probs=43.1
Q ss_pred CCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCch-hhHHHHHHHHHHhhhC-----CCCeeEEEEcccc
Q 028600 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDARKGITMFSKV-----QVPVCSFLAQIIS 204 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~-~~~~~~~~~l~~l~~~-----~~~~~g~v~N~~~ 204 (207)
..+.+.++|+|+...........+..+|.+++|.+.+. .+.+.+...++.+.+. +.++ -+|+|+.|
T Consensus 49 ~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pi-i~v~nK~D 120 (172)
T 2erx_A 49 SICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPI-MLVGNKCD 120 (172)
T ss_dssp EEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCE-EEEEECGG
T ss_pred EEEEEEEEECCCchhhHHHHHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCE-EEEEEccc
Confidence 34678999999754332333444557899999988764 3455555555555432 4565 58999987
No 277
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=94.26 E-value=0.044 Score=38.66 Aligned_cols=27 Identities=30% Similarity=0.459 Sum_probs=21.9
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHH
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALAS 58 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~ 58 (207)
.+-+.+ .+..|+|||+++..+|..+..
T Consensus 43 ~~~vll-~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 43 KNNPIL-LGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp SCEEEE-ESCGGGCHHHHHHHHHHHHHT
T ss_pred CCceEE-ECCCCCCHHHHHHHHHHHHHh
Confidence 344544 688999999999999998876
No 278
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.25 E-value=0.055 Score=43.19 Aligned_cols=39 Identities=15% Similarity=0.150 Sum_probs=31.8
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhC--------CCeEEEEecCC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKC--------QLKVGLLDADV 71 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~--------g~~VlliD~d~ 71 (207)
++.+.+ .+.+|+|||+++..++..+.. . +..++.+++..
T Consensus 45 ~~~vll-~G~~G~GKT~la~~l~~~~~~-~~~~~~~~~~~~~~~i~~~~ 91 (384)
T 2qby_B 45 KFSNLF-LGLTGTGKTFVSKYIFNEIEE-VKKEDEEYKDVKQAYVNCRE 91 (384)
T ss_dssp CCEEEE-EECTTSSHHHHHHHHHHHHHH-HHHHSSSSTTCEEEEEEHHH
T ss_pred CCcEEE-ECCCCCCHHHHHHHHHHHHHH-HhhhhcCCCCceEEEEECcc
Confidence 455555 688999999999999999877 5 88888888643
No 279
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=94.25 E-value=0.17 Score=36.49 Aligned_cols=67 Identities=10% Similarity=0.068 Sum_probs=44.5
Q ss_pred CCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCch-hhHHHHHHHHHHhhhC---CCCeeEEEEccccC
Q 028600 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDARKGITMFSKV---QVPVCSFLAQIISS 205 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~-~~~~~~~~~l~~l~~~---~~~~~g~v~N~~~~ 205 (207)
..+.+.|+|+|+.-.........+..+|.+++|.+... .+...+...+..+.+. +.++ -+|+|+.|-
T Consensus 55 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~pi-ilv~nK~Dl 125 (206)
T 2bcg_Y 55 KTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLK-LLVGNKCDL 125 (206)
T ss_dssp EEEEEEEECCTTTTTTTCCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEE-EEEEECTTC
T ss_pred EEEEEEEEeCCChHHHHHHHHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCE-EEEEECCCC
Confidence 34689999999743322333445567999999998754 4566666666666543 3444 588999873
No 280
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=94.21 E-value=0.13 Score=35.58 Aligned_cols=68 Identities=10% Similarity=-0.031 Sum_probs=43.8
Q ss_pred CCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCch-hhHHHHHHHHHHhhhCCC--CeeEEEEccccC
Q 028600 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDARKGITMFSKVQV--PVCSFLAQIISS 205 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~-~~~~~~~~~l~~l~~~~~--~~~g~v~N~~~~ 205 (207)
..+.+.++|+|+.-.........+..+|.+++|.+... .+...+...++.+.+.+. ..+-+|.|+.|-
T Consensus 53 ~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl 123 (170)
T 1z0j_A 53 ELHKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDL 123 (170)
T ss_dssp EEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTC
T ss_pred eEEEEEEEcCCCchhhhcccHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCcc
Confidence 35778999999643222333444557899999988754 356666666666665422 234577899873
No 281
>1jbw_A Folylpolyglutamate synthase; FPGS folate AMPPCP ternary complex, ligase; HET: KCX ACQ TMF; 1.85A {Lactobacillus casei} SCOP: c.59.1.2 c.72.2.2 PDB: 1fgs_A* 1jbv_A* 2gca_A 2gc5_A* 2gc6_A* 2gcb_A
Probab=94.18 E-value=0.064 Score=43.94 Aligned_cols=34 Identities=32% Similarity=0.404 Sum_probs=30.6
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEE
Q 028600 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLL 67 (207)
Q Consensus 30 ~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~Vlli 67 (207)
..++|+|+++. ||||++.-|+..|.. .|++|.++
T Consensus 38 ~~~vI~VtGTn---GKtTT~~~l~~iL~~-~G~~vg~~ 71 (428)
T 1jbw_A 38 QGRYIHVTGTN---GKGSAANAIAHVLEA-SGLTVGLY 71 (428)
T ss_dssp SSCEEEEECSS---CHHHHHHHHHHHHHH-TTCCEEEE
T ss_pred cCcEEEEECCC---ChHHHHHHHHHHHHH-CCCCEEEE
Confidence 46899998765 999999999999999 99999887
No 282
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=94.16 E-value=0.13 Score=35.69 Aligned_cols=66 Identities=12% Similarity=0.009 Sum_probs=42.1
Q ss_pred CCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCchh-hHHHHHHHHHHhhh----CCCCeeEEEEccccC
Q 028600 139 NLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDV-ALIDARKGITMFSK----VQVPVCSFLAQIISS 205 (207)
Q Consensus 139 ~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~~-~~~~~~~~l~~l~~----~~~~~~g~v~N~~~~ 205 (207)
.+.+.++|+|+.-.........+..+|.+++|.+.... ++......+..+.+ .+.++ -+|+||.|-
T Consensus 50 ~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pi-ilv~nK~Dl 120 (171)
T 1upt_A 50 NLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAIL-VVFANKQDM 120 (171)
T ss_dssp TEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEE-EEEEECTTS
T ss_pred CEEEEEEECCCChhhhHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEE-EEEEECCCC
Confidence 56789999996432222323445578999999887643 46666555555433 34554 689999873
No 283
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=94.16 E-value=0.053 Score=39.06 Aligned_cols=66 Identities=6% Similarity=0.051 Sum_probs=41.9
Q ss_pred CCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCch-hhHHHHHHHHHHhhh------CCCCeeEEEEccccC
Q 028600 139 NLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDARKGITMFSK------VQVPVCSFLAQIISS 205 (207)
Q Consensus 139 ~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~-~~~~~~~~~l~~l~~------~~~~~~g~v~N~~~~ 205 (207)
.+.+.|+|+|+.-.........+..+|.+++|.+... .+...+...+..+.+ .+.++ -+|.|+.|-
T Consensus 72 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~pi-ilv~nK~Dl 144 (208)
T 2yc2_C 72 SVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRA-VLVANKTDL 144 (208)
T ss_dssp EEEEEEEETTTTHHHHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEE-EEEEECC--
T ss_pred EEEEEEEECCCcHHHHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcE-EEEEECccc
Confidence 5788999999642211222333446899999988754 356677777776664 34444 689999873
No 284
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=94.15 E-value=0.046 Score=40.28 Aligned_cols=33 Identities=27% Similarity=0.329 Sum_probs=24.4
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d 70 (207)
+..|.++ +..|+||||++..||..+ |. .++|+|
T Consensus 4 ~~~I~l~-G~~GsGKsT~a~~La~~l----~~--~~i~~d 36 (220)
T 1aky_A 4 SIRMVLI-GPPGAGKGTQAPNLQERF----HA--AHLATG 36 (220)
T ss_dssp CCEEEEE-CCTTSSHHHHHHHHHHHH----CC--EEEEHH
T ss_pred CcEEEEE-CCCCCCHHHHHHHHHHHc----Cc--eEEehh
Confidence 5667774 778999999999998865 33 456653
No 285
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=94.14 E-value=0.025 Score=38.92 Aligned_cols=36 Identities=19% Similarity=0.036 Sum_probs=28.7
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCC
Q 028600 34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (207)
Q Consensus 34 I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~ 72 (207)
+.+ .+..|+|||++|..++....+ .+.+++ +++...
T Consensus 27 vll-~G~~GtGKt~lA~~i~~~~~~-~~~~~v-~~~~~~ 62 (145)
T 3n70_A 27 VWL-YGAPGTGRMTGARYLHQFGRN-AQGEFV-YRELTP 62 (145)
T ss_dssp EEE-ESSTTSSHHHHHHHHHHSSTT-TTSCCE-EEECCT
T ss_pred EEE-ECCCCCCHHHHHHHHHHhCCc-cCCCEE-EECCCC
Confidence 444 588999999999999987777 687877 887643
No 286
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=94.11 E-value=0.048 Score=38.97 Aligned_cols=33 Identities=27% Similarity=0.291 Sum_probs=24.6
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d 70 (207)
+++|++ .+..|+||||++..||..+ |. .++|.|
T Consensus 3 ~~~I~l-~G~~GsGKsT~a~~L~~~~----~~--~~i~~d 35 (196)
T 1tev_A 3 PLVVFV-LGGPGAGKGTQCARIVEKY----GY--THLSAG 35 (196)
T ss_dssp CEEEEE-ECCTTSSHHHHHHHHHHHH----CC--EEEEHH
T ss_pred ceEEEE-ECCCCCCHHHHHHHHHHHh----CC--eEEeHH
Confidence 456777 5889999999999998754 43 456665
No 287
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.11 E-value=0.024 Score=40.59 Aligned_cols=67 Identities=9% Similarity=0.044 Sum_probs=44.5
Q ss_pred CCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCc-hhhHHHHHHHHHHhhh---CCCCeeEEEEccccC
Q 028600 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQ-DVALIDARKGITMFSK---VQVPVCSFLAQIISS 205 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~-~~~~~~~~~~l~~l~~---~~~~~~g~v~N~~~~ 205 (207)
..+.+.|+|+|+.-.........+..+|.+++|.+.. ..+.+.+...++.+.+ .+.++ -+|.||.|-
T Consensus 70 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pi-ilv~nK~Dl 140 (191)
T 3dz8_A 70 KRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQV-ILVGNKCDM 140 (191)
T ss_dssp TTEEEEEECHHHHHHCHHHHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEE-EEEEECTTC
T ss_pred EEEEEEEEeCCChHHHHHHHHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCE-EEEEECCCC
Confidence 4677899999863221123344455799999998876 4466667777776665 34444 588899883
No 288
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=94.11 E-value=0.04 Score=39.80 Aligned_cols=36 Identities=33% Similarity=0.351 Sum_probs=26.1
Q ss_pred CCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCC
Q 028600 28 DGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (207)
Q Consensus 28 ~~~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~ 71 (207)
++.+++|+++ +..|+||||++..||. .| ..++|+|.
T Consensus 5 ~~~~~~I~i~-G~~GsGKST~~~~La~-----~g--~~~id~d~ 40 (203)
T 1uf9_A 5 AKHPIIIGIT-GNIGSGKSTVAALLRS-----WG--YPVLDLDA 40 (203)
T ss_dssp -CCCEEEEEE-ECTTSCHHHHHHHHHH-----TT--CCEEEHHH
T ss_pred ccCceEEEEE-CCCCCCHHHHHHHHHH-----CC--CEEEcccH
Confidence 3447788885 7789999999888776 35 45678774
No 289
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=94.06 E-value=0.036 Score=40.59 Aligned_cols=36 Identities=17% Similarity=0.231 Sum_probs=27.2
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHH-----HhCC-CeEEEEecC
Q 028600 34 IAVASGKGGVGKSTTAVNLAVALA-----SKCQ-LKVGLLDAD 70 (207)
Q Consensus 34 I~v~s~kgG~GkTt~a~~LA~~la-----~~~g-~~VlliD~d 70 (207)
|.+..+..|+|||+.+..++..++ + .| ++|.+..+|
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~~~~~~~~~-~g~r~v~~~~~~ 48 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMANDEMFKPDE-NGIRRKVFTNIK 48 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCGGGSCCT-TSCCCCEEECCT
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhhcccc-cCceEEEEecCC
Confidence 444468999999999999877765 5 78 777667655
No 290
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=94.06 E-value=0.036 Score=45.19 Aligned_cols=66 Identities=12% Similarity=0.107 Sum_probs=42.2
Q ss_pred CCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCchhh-HHHHHHHHHHhhhCCCCeeEEEEccccC
Q 028600 140 LDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVA-LIDARKGITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 140 ~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~~~-~~~~~~~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
+.+.|+|+|+-..........+..+|.+++|+++.... ..++.+.+..++..+.+.+-+++||.|.
T Consensus 83 ~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~~~~iivviNK~Dl 149 (410)
T 1kk1_A 83 RRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIEL 149 (410)
T ss_dssp EEEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGG
T ss_pred cEEEEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEECccC
Confidence 67899999962111112233344679999999987532 4455555556666666555688999884
No 291
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=94.05 E-value=0.11 Score=42.56 Aligned_cols=62 Identities=10% Similarity=0.206 Sum_probs=43.9
Q ss_pred CEEEEcCCCCCCcch-------hhhhhhhcCceEEEeeCCchhhHHHHHHHHHHhhhCCCCeeEEEEccccC
Q 028600 141 DILVIDMPPGTGDAQ-------LTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 141 D~IiiD~~~~~~~~~-------~~~~~~~~~d~vi~v~~~~~~~~~~~~~~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
.+.|+|||+-..... .....+..+|.+++|++.+ ........++.+.+.+.++ -+|+||.|.
T Consensus 84 ~l~liDTpG~~d~~~l~~~~~~~~~~~l~~aD~vllVvD~~--~~~~~~~~l~~l~~~~~pi-IvV~NK~Dl 152 (423)
T 3qq5_A 84 PVTLVDTPGLDDVGELGRLRVEKARRVFYRADCGILVTDSA--PTPYEDDVVNLFKEMEIPF-VVVVNKIDV 152 (423)
T ss_dssp EEEEEECSSTTCCCTTCCCCHHHHHHHHTSCSEEEEECSSS--CCHHHHHHHHHHHHTTCCE-EEECCCCTT
T ss_pred eEEEEECcCCCcccchhHHHHHHHHHHHhcCCEEEEEEeCC--ChHHHHHHHHHHHhcCCCE-EEEEeCcCC
Confidence 689999996322111 1234555799999999983 3455677788888888887 499999884
No 292
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=94.01 E-value=0.039 Score=38.63 Aligned_cols=28 Identities=39% Similarity=0.367 Sum_probs=21.4
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEE
Q 028600 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGL 66 (207)
Q Consensus 33 ~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~Vll 66 (207)
+|++ .+..|+||||++..| .+ .|..++-
T Consensus 3 ~I~l-~G~~GsGKsT~a~~L----~~-~g~~~i~ 30 (179)
T 3lw7_A 3 VILI-TGMPGSGKSEFAKLL----KE-RGAKVIV 30 (179)
T ss_dssp EEEE-ECCTTSCHHHHHHHH----HH-TTCEEEE
T ss_pred EEEE-ECCCCCCHHHHHHHH----HH-CCCcEEE
Confidence 5555 688999999999988 45 7877544
No 293
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=93.99 E-value=0.023 Score=40.43 Aligned_cols=30 Identities=30% Similarity=0.264 Sum_probs=18.6
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEE
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVG 65 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~Vl 65 (207)
+++|.+ .+..|+||||++..||.. .|..++
T Consensus 5 ~~~I~l-~G~~GsGKST~a~~La~~----l~~~~i 34 (183)
T 2vli_A 5 SPIIWI-NGPFGVGKTHTAHTLHER----LPGSFV 34 (183)
T ss_dssp CCEEEE-ECCC----CHHHHHHHHH----STTCEE
T ss_pred CeEEEE-ECCCCCCHHHHHHHHHHh----cCCCEE
Confidence 567777 588999999999988764 455554
No 294
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=93.97 E-value=0.075 Score=45.94 Aligned_cols=34 Identities=32% Similarity=0.404 Sum_probs=30.9
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEe
Q 028600 34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLD 68 (207)
Q Consensus 34 I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD 68 (207)
+++.-+-+|+|||++.+++...+.+ .|.+|++.-
T Consensus 207 ~~lI~GPPGTGKT~ti~~~I~~l~~-~~~~ILv~a 240 (646)
T 4b3f_X 207 LAIIHGPPGTGKTTTVVEIILQAVK-QGLKVLCCA 240 (646)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHH-TTCCEEEEE
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHh-CCCeEEEEc
Confidence 7777899999999999999999999 999998874
No 295
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=93.97 E-value=0.052 Score=38.66 Aligned_cols=33 Identities=30% Similarity=0.381 Sum_probs=24.6
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d 70 (207)
+..|.+ .+..|+||||++..||..+ |. ..+|.|
T Consensus 4 g~~I~l-~G~~GsGKST~~~~La~~l----~~--~~i~~d 36 (186)
T 3cm0_A 4 GQAVIF-LGPPGAGKGTQASRLAQEL----GF--KKLSTG 36 (186)
T ss_dssp EEEEEE-ECCTTSCHHHHHHHHHHHH----TC--EEECHH
T ss_pred CeEEEE-ECCCCCCHHHHHHHHHHHh----CC--eEecHH
Confidence 556777 4789999999999998755 33 456665
No 296
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=93.96 E-value=0.061 Score=37.27 Aligned_cols=67 Identities=9% Similarity=0.091 Sum_probs=43.4
Q ss_pred CCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCch-hhHHHHHHHHHHhhhC---CCCeeEEEEccccC
Q 028600 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDARKGITMFSKV---QVPVCSFLAQIISS 205 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~-~~~~~~~~~l~~l~~~---~~~~~g~v~N~~~~ 205 (207)
..+.+.|+|+|+.-.........+..+|.+++|.+... .+...+...+..+.+. +.++ -+|+|+.|-
T Consensus 50 ~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pi-ilv~nK~Dl 120 (170)
T 1g16_A 50 KKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQL-LLVGNKSDM 120 (170)
T ss_dssp CEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEE-EEEEECTTC
T ss_pred EEEEEEEEeCCCChhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcE-EEEEECccC
Confidence 35678999999642222233444557899999998764 3555666666655543 4444 689999873
No 297
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=93.95 E-value=0.086 Score=38.27 Aligned_cols=66 Identities=8% Similarity=0.065 Sum_probs=42.3
Q ss_pred CCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCc-hhhHHHHH-HHHHHhhhC--CCCeeEEEEcccc
Q 028600 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQ-DVALIDAR-KGITMFSKV--QVPVCSFLAQIIS 204 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~-~~~~~~~~-~~l~~l~~~--~~~~~g~v~N~~~ 204 (207)
..+.+.|+|+|+.-.........+..+|.+++|.+.. ..+...+. ..+..+.+. +.++ -+|.|+.|
T Consensus 55 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~pi-ilv~nK~D 124 (212)
T 2j0v_A 55 QIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPI-VLVGTKLD 124 (212)
T ss_dssp CEEEEEEECCCCCCCCCC--CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCE-EEEEECHH
T ss_pred EEEEEEEEECCCcHHHHHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCE-EEEEeCHH
Confidence 4578899999964322222233455789999998875 34566654 455666543 5565 58899986
No 298
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.95 E-value=0.15 Score=36.50 Aligned_cols=66 Identities=8% Similarity=0.036 Sum_probs=43.9
Q ss_pred CCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCch-hhHHHHHHHHHHhhh----CCCCeeEEEEccccC
Q 028600 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDARKGITMFSK----VQVPVCSFLAQIISS 205 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~-~~~~~~~~~l~~l~~----~~~~~~g~v~N~~~~ 205 (207)
..+.+.|+|+|+... .......+..+|.+++|.+... .+...+...++.+.+ .+.++ -+|.||.|.
T Consensus 74 ~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~pi-ilv~NK~Dl 144 (196)
T 2atv_A 74 EVVSMEILDTAGQED-TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTL-ILVGNKADL 144 (196)
T ss_dssp EEEEEEEEECCCCCC-CHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCE-EEEEECGGG
T ss_pred EEEEEEEEECCCCCc-ccchhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcE-EEEEECccc
Confidence 457789999996443 3333445557999999988764 456666555555443 35555 589999873
No 299
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=93.94 E-value=0.061 Score=42.75 Aligned_cols=34 Identities=18% Similarity=0.332 Sum_probs=26.9
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCC
Q 028600 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (207)
Q Consensus 32 k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~ 72 (207)
++|+| .+..|+||||++..||..+ | +.+|++|..
T Consensus 8 ~lI~I-~GptgSGKTtla~~La~~l----~--~~iis~Ds~ 41 (340)
T 3d3q_A 8 FLIVI-VGPTASGKTELSIEVAKKF----N--GEIISGDSM 41 (340)
T ss_dssp EEEEE-ECSTTSSHHHHHHHHHHHT----T--EEEEECCSS
T ss_pred ceEEE-ECCCcCcHHHHHHHHHHHc----C--Cceeccccc
Confidence 46666 5778999999999998754 3 688999964
No 300
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=93.93 E-value=0.17 Score=35.37 Aligned_cols=65 Identities=14% Similarity=0.123 Sum_probs=41.7
Q ss_pred CCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCchh-hHHHHHHHHHHh----hhCCCCeeEEEEcccc
Q 028600 139 NLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDV-ALIDARKGITMF----SKVQVPVCSFLAQIIS 204 (207)
Q Consensus 139 ~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~~-~~~~~~~~l~~l----~~~~~~~~g~v~N~~~ 204 (207)
.+.+.|+|+|+.-.........+..+|.+++|.+.... +...+...+..+ ...+.++ -+|+|+.|
T Consensus 56 ~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pi-ilv~nK~D 125 (181)
T 2fn4_A 56 PARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPV-VLVGNKAD 125 (181)
T ss_dssp EEEEEEEECCCTTTTSCCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCE-EEEEECGG
T ss_pred EEEEEEEECCCchhhHHHHHHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCE-EEEEECcc
Confidence 46788999997433223334445578999999877653 555555555444 2335565 58999987
No 301
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=93.93 E-value=0.11 Score=36.35 Aligned_cols=67 Identities=12% Similarity=0.039 Sum_probs=39.1
Q ss_pred CCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCch-hhHHHHHHHHHHhhh-------CCCCeeEEEEccccC
Q 028600 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDARKGITMFSK-------VQVPVCSFLAQIISS 205 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~-~~~~~~~~~l~~l~~-------~~~~~~g~v~N~~~~ 205 (207)
..+.+.|+|+|+.-.........+..+|.+++|.+... .+...+...+..+.. .+.++ -+|+|+.|-
T Consensus 56 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~-ilv~nK~Dl 130 (182)
T 1ky3_A 56 KVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPF-VILGNKIDA 130 (182)
T ss_dssp CCEEEEEECCC----------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCE-EEEEECTTS
T ss_pred cEEEEEEEECCCChHhhhhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcE-EEEEECCcc
Confidence 46788999999643222222334457899999987654 355555555555442 34555 589999884
No 302
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=93.90 E-value=0.053 Score=39.29 Aligned_cols=33 Identities=30% Similarity=0.517 Sum_probs=25.4
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCC
Q 028600 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (207)
Q Consensus 32 k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~ 71 (207)
++|++ .+..|+||||++..||..+. +.++|.|.
T Consensus 3 ~~i~i-~G~~GsGKst~~~~la~~lg------~~~~d~d~ 35 (208)
T 3ake_A 3 GIVTI-DGPSASGKSSVARRVAAALG------VPYLSSGL 35 (208)
T ss_dssp SEEEE-ECSTTSSHHHHHHHHHHHHT------CCEEEHHH
T ss_pred eEEEE-ECCCCCCHHHHHHHHHHhcC------Cceeccch
Confidence 47777 58889999999999988653 35677774
No 303
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=93.90 E-value=0.05 Score=46.18 Aligned_cols=64 Identities=8% Similarity=0.045 Sum_probs=44.0
Q ss_pred CEEEEcCCCCCCc-----------chhhhhhhhcCceEEEeeCCchh-hHHHHHHHHHHhhhCCCCeeEEEEccccC
Q 028600 141 DILVIDMPPGTGD-----------AQLTTTQTLQLSGALIVSTPQDV-ALIDARKGITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 141 D~IiiD~~~~~~~-----------~~~~~~~~~~~d~vi~v~~~~~~-~~~~~~~~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
.++|+|||+.... .......+..+|.+++|+++... ........++.+.+.+.++ -+|+||+|.
T Consensus 155 ~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~pv-ilVlNK~Dl 230 (550)
T 2qpt_A 155 SISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGHEDKI-RVVLNKADM 230 (550)
T ss_dssp HCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTCGGGE-EEEEECGGG
T ss_pred CEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhcCCCE-EEEEECCCc
Confidence 5799999964321 11223345579999999998763 3455667777777766665 699999884
No 304
>4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli}
Probab=93.86 E-value=0.059 Score=41.37 Aligned_cols=61 Identities=21% Similarity=0.172 Sum_probs=31.8
Q ss_pred CCCceEEEEeecCccccccccccccccCCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCC
Q 028600 1 MKNSFRIFTRLGGVRYYAAFGSKDLKIDGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (207)
Q Consensus 1 ~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~ 71 (207)
|.+.++.+.--.....++.+.. +.-.+|++.|+++.+|.|+ .+|..|++ .|.+|+++|-+.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~----~~l~~k~vlVTGas~GIG~-----aia~~l~~-~G~~V~~~~r~~ 61 (277)
T 4dqx_A 1 MHHHHHHSSGVDLGTENLYFQS----MDLNQRVCIVTGGGSGIGR-----ATAELFAK-NGAYVVVADVNE 61 (277)
T ss_dssp ---------------------C----CTTTTCEEEEETTTSHHHH-----HHHHHHHH-TTCEEEEEESSH
T ss_pred CCCCcccccCCCCCcccccccc----CCCCCCEEEEECCCcHHHH-----HHHHHHHH-CCCEEEEEeCCH
Confidence 3344444433333333444433 2334789999999998776 57888899 999999998653
No 305
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=93.84 E-value=0.19 Score=35.90 Aligned_cols=67 Identities=12% Similarity=0.059 Sum_probs=42.0
Q ss_pred CCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCch-hhHHHHHHHHHHhhh----CCCCeeEEEEccccC
Q 028600 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDARKGITMFSK----VQVPVCSFLAQIISS 205 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~-~~~~~~~~~l~~l~~----~~~~~~g~v~N~~~~ 205 (207)
..+.+.|+|+|+.-.........+..+|.+++|.+... .++..+...+..+.+ .+.++ -+|.||.|-
T Consensus 71 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~pi-ilv~NK~Dl 142 (192)
T 2b6h_A 71 KNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVL-LVFANKQDM 142 (192)
T ss_dssp TTEEEEEEECC-----CTTHHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEE-EEEEECTTS
T ss_pred CCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeE-EEEEECCCC
Confidence 45789999999643222333344567999999988754 356666666655543 24454 689999883
No 306
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=93.83 E-value=0.081 Score=37.27 Aligned_cols=66 Identities=12% Similarity=0.103 Sum_probs=41.8
Q ss_pred CCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCch-hhHHHHH-HHHHHhhhC--CCCeeEEEEcccc
Q 028600 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDAR-KGITMFSKV--QVPVCSFLAQIIS 204 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~-~~~~~~~-~~l~~l~~~--~~~~~g~v~N~~~ 204 (207)
..+.+.|+|+|+.-.........+..+|.+++|.+... .+...+. ..+..+.+. +.++ -+|.|+.|
T Consensus 51 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi-ilv~nK~D 120 (186)
T 1mh1_A 51 KPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPI-ILVGTKLD 120 (186)
T ss_dssp EEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCE-EEEEECHH
T ss_pred EEEEEEEEECCCCHhHHHHHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCCCCCE-EEEeEccc
Confidence 45678899999642222222334457899999988764 4555554 455555543 5565 58899986
No 307
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=93.82 E-value=0.12 Score=36.67 Aligned_cols=68 Identities=10% Similarity=0.061 Sum_probs=44.5
Q ss_pred CCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCch-hhHHHHHHHHHHhhhCC---CCeeEEEEccccC
Q 028600 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDARKGITMFSKVQ---VPVCSFLAQIISS 205 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~-~~~~~~~~~l~~l~~~~---~~~~g~v~N~~~~ 205 (207)
..+.+.|+|+|+.-.........+..+|.+++|.+... .+...+...+..+.+.. ...+-+|+|+.|-
T Consensus 62 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl 133 (195)
T 1x3s_A 62 NKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDK 133 (195)
T ss_dssp EEEEEEEEEECSSGGGCCSHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTS
T ss_pred eEEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcC
Confidence 45789999999743222333455567999999988754 45666666666666531 2234688999873
No 308
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=93.80 E-value=0.12 Score=36.58 Aligned_cols=67 Identities=9% Similarity=0.057 Sum_probs=42.7
Q ss_pred CCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCch-hhHHHHHHHHHHhhh----CCCCeeEEEEccccC
Q 028600 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDARKGITMFSK----VQVPVCSFLAQIISS 205 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~-~~~~~~~~~l~~l~~----~~~~~~g~v~N~~~~ 205 (207)
..+.+.|+|+|+.-.........+..+|.+++|.+... .+...+.+.+..+.+ .+.++ -+|.||.|-
T Consensus 60 ~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pi-ilv~nK~Dl 131 (186)
T 1ksh_A 60 RGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATL-LIFANKQDL 131 (186)
T ss_dssp TTEEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEE-EEEEECTTS
T ss_pred CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcE-EEEEeCccC
Confidence 35678999999642211222334457899999988764 356766666655543 24454 689999873
No 309
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=93.80 E-value=0.15 Score=37.47 Aligned_cols=66 Identities=12% Similarity=0.103 Sum_probs=42.2
Q ss_pred CCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCch-hhHHHHHHHHHHhhhC---CCCeeEEEEccccC
Q 028600 139 NLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDARKGITMFSKV---QVPVCSFLAQIISS 205 (207)
Q Consensus 139 ~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~-~~~~~~~~~l~~l~~~---~~~~~g~v~N~~~~ 205 (207)
.+.+.|+|+|+.-.........+..+|.+|+|.+... .+...+...+..+... +.+ +-+|.|+.|-
T Consensus 61 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~p-iilv~nK~Dl 130 (223)
T 3cpj_B 61 RIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNVA-VGLIGNKSDL 130 (223)
T ss_dssp EEEEEEECCTTTTTTTCCCGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CE-EEEEECCGGG
T ss_pred EEEEEEEECCCccchhhhHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCe-EEEEEECccc
Confidence 4678999999743222333444557899999988754 3566666666666543 344 4688899873
No 310
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=93.76 E-value=0.3 Score=39.74 Aligned_cols=33 Identities=33% Similarity=0.615 Sum_probs=25.7
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCC
Q 028600 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (207)
Q Consensus 32 k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~ 71 (207)
++|+| ++-.|+||||++..||..+.. .+|.+|.
T Consensus 3 ~~i~i-~GptgsGKttla~~La~~~~~------~iis~Ds 35 (409)
T 3eph_A 3 KVIVI-AGTTGVGKSQLSIQLAQKFNG------EVINSDS 35 (409)
T ss_dssp EEEEE-EECSSSSHHHHHHHHHHHHTE------EEEECCT
T ss_pred cEEEE-ECcchhhHHHHHHHHHHHCCC------eEeecCc
Confidence 56666 578899999999999987643 4788875
No 311
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=93.74 E-value=0.13 Score=35.89 Aligned_cols=65 Identities=11% Similarity=0.051 Sum_probs=42.1
Q ss_pred CCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCch-hhHHHHHHHHHHhhhC---CCCeeEEEEcccc
Q 028600 139 NLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDARKGITMFSKV---QVPVCSFLAQIIS 204 (207)
Q Consensus 139 ~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~-~~~~~~~~~l~~l~~~---~~~~~g~v~N~~~ 204 (207)
.+.+.|+|+|+.-.........+..+|.+++|.+... .+...+...+..+... +.++ -+|+|+.|
T Consensus 62 ~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pi-ilv~nK~D 130 (179)
T 2y8e_A 62 TVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVII-MLVGNKTD 130 (179)
T ss_dssp EEEEEEEEECCSGGGGGGSHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEE-EEEEECGG
T ss_pred EEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcE-EEEEECCc
Confidence 4678999999643222333344557999999988754 4556666665555432 4444 58999987
No 312
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.72 E-value=0.13 Score=36.16 Aligned_cols=67 Identities=15% Similarity=0.103 Sum_probs=41.7
Q ss_pred CCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCch-hhHHHHHHHHHHhhh----CCCCeeEEEEccccC
Q 028600 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDARKGITMFSK----VQVPVCSFLAQIISS 205 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~-~~~~~~~~~l~~l~~----~~~~~~g~v~N~~~~ 205 (207)
..+.+.++|+|+...........+..+|.+++|.+... .+...+...+..+.+ .+.+ +-+|+|+.|-
T Consensus 60 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl 131 (183)
T 1moz_A 60 KNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAA-LLVFANKQDQ 131 (183)
T ss_dssp TTEEEEEEEEC----CCTTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCE-EEEEEECTTS
T ss_pred CCEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCe-EEEEEECCCC
Confidence 34678999999643222333344557899999988743 456766666666543 3444 4689999883
No 313
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=93.71 E-value=0.093 Score=36.34 Aligned_cols=67 Identities=12% Similarity=0.132 Sum_probs=40.3
Q ss_pred CCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCch-hhHHHHHHHHHHhhh---CCCCeeEEEEccccC
Q 028600 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDARKGITMFSK---VQVPVCSFLAQIISS 205 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~-~~~~~~~~~l~~l~~---~~~~~~g~v~N~~~~ 205 (207)
..+.+.|+|+|+.-.........+..+|.+++|.+... .+...+...++.+.+ .+.++ -+|+||.|-
T Consensus 53 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi-ilv~nK~Dl 123 (170)
T 1z08_A 53 KRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEICL-CIVGNKIDL 123 (170)
T ss_dssp CEEEEEEEECCCC-------CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEE-EEEEECGGG
T ss_pred EEEEEEEEECCCcHhhhhhHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeE-EEEEECccc
Confidence 45678999999643222222233447899999988754 455666665555543 34444 589999873
No 314
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=93.70 E-value=0.078 Score=39.36 Aligned_cols=26 Identities=35% Similarity=0.405 Sum_probs=21.8
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHH
Q 028600 30 VKDVIAVASGKGGVGKSTTAVNLAVAL 56 (207)
Q Consensus 30 ~~k~I~v~s~kgG~GkTt~a~~LA~~l 56 (207)
.+|+|.+. +.+|+||+|.|..||..+
T Consensus 28 k~kiI~ll-GpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 28 KAKVIFVL-GGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp SCEEEEEE-CCTTCCHHHHHHHHHHHH
T ss_pred CCcEEEEE-CCCCCCHHHHHHHHHHHH
Confidence 37888876 778999999999999865
No 315
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=93.67 E-value=0.059 Score=39.16 Aligned_cols=33 Identities=33% Similarity=0.433 Sum_probs=24.8
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~ 71 (207)
+.+|+++ +..|+||||++..||. .|.. ++|+|.
T Consensus 2 ~~~i~l~-G~~GsGKST~~~~La~-----lg~~--~id~d~ 34 (206)
T 1jjv_A 2 TYIVGLT-GGIGSGKTTIANLFTD-----LGVP--LVDADV 34 (206)
T ss_dssp CEEEEEE-CSTTSCHHHHHHHHHT-----TTCC--EEEHHH
T ss_pred CcEEEEE-CCCCCCHHHHHHHHHH-----CCCc--ccchHH
Confidence 4678885 7889999999888865 4654 567764
No 316
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=93.67 E-value=0.065 Score=42.55 Aligned_cols=40 Identities=20% Similarity=0.248 Sum_probs=31.8
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhC--CCeEEEEecCC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKC--QLKVGLLDADV 71 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~--g~~VlliD~d~ 71 (207)
++.+.+ .+.+|+||||++..++..+.... +..++.+++..
T Consensus 45 ~~~vli-~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~ 86 (386)
T 2qby_A 45 PNNIFI-YGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQ 86 (386)
T ss_dssp CCCEEE-EECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHH
T ss_pred CCeEEE-ECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCC
Confidence 555666 58899999999999999888722 78889888653
No 317
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=93.66 E-value=0.063 Score=39.29 Aligned_cols=27 Identities=30% Similarity=0.292 Sum_probs=21.8
Q ss_pred CCCeEEEEEeCCCCCcHHHHHHHHHHHH
Q 028600 29 GVKDVIAVASGKGGVGKSTTAVNLAVAL 56 (207)
Q Consensus 29 ~~~k~I~v~s~kgG~GkTt~a~~LA~~l 56 (207)
+.+++|++ .+..|+||||++..|+..+
T Consensus 6 ~~g~~i~l-~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 6 ERGLLIVL-SGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCCCEEEE-ECCTTSCHHHHHHHHHHST
T ss_pred CCCcEEEE-ECcCCCCHHHHHHHHHhhC
Confidence 34778888 5888999999999888654
No 318
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=93.60 E-value=0.072 Score=42.49 Aligned_cols=40 Identities=28% Similarity=0.284 Sum_probs=31.6
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHH--hC---CCeEEEEecCC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALAS--KC---QLKVGLLDADV 71 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~--~~---g~~VlliD~d~ 71 (207)
++++.++ +..|+||||++..++..++. .. |-+|++||...
T Consensus 131 G~i~~I~-G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~ 175 (349)
T 1pzn_A 131 QAITEVF-GEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 175 (349)
T ss_dssp SEEEEEE-ESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSS
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCC
Confidence 7788885 77899999999999998743 02 35889998864
No 319
>1e8c_A UDP-N-acetylmuramoylalanyl-D-glutamate--2,6- diaminopimelate ligase; peptidoglycan biosynthesis; HET: KCX UAG API; 2.00A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1 c.72.2.1
Probab=93.59 E-value=0.1 Score=43.69 Aligned_cols=34 Identities=21% Similarity=0.109 Sum_probs=30.2
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEE
Q 028600 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLL 67 (207)
Q Consensus 30 ~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~Vlli 67 (207)
..++|+|+++. ||||++..|+..|.. .|++|.++
T Consensus 107 ~~~vI~VTGTn---GKTTT~~ml~~iL~~-~g~~~~~~ 140 (498)
T 1e8c_A 107 NLRLVGVTGTN---GKTTTTQLLAQWSQL-LGEISAVM 140 (498)
T ss_dssp SSEEEEEESSS---CHHHHHHHHHHHHHH-TTCCEEEE
T ss_pred cCeEEEEeCCc---ChHHHHHHHHHHHHh-CCCCEEEE
Confidence 46899998665 999999999999999 99999876
No 320
>1o5z_A Folylpolyglutamate synthase/dihydrofolate synthas; TM0166, structural genomics, JC protein structure initiative; 2.10A {Thermotoga maritima} SCOP: c.59.1.2 c.72.2.2
Probab=93.56 E-value=0.082 Score=43.56 Aligned_cols=34 Identities=24% Similarity=0.262 Sum_probs=30.5
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEE
Q 028600 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLL 67 (207)
Q Consensus 30 ~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~Vlli 67 (207)
..++|+|+++. ||||++.-|+..|.. .|++|.++
T Consensus 51 ~~~vI~VTGTn---GKtTT~~~l~~iL~~-~G~~vg~~ 84 (442)
T 1o5z_A 51 EYKTIHIGGTN---GKGSVANMVSNILVS-QGYRVGSY 84 (442)
T ss_dssp SSEEEEEECSS---SHHHHHHHHHHHHHH-HTCCEEEE
T ss_pred cCCEEEEECCc---CHHHHHHHHHHHHHH-CCCCEEEE
Confidence 46899998765 999999999999999 99999987
No 321
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=93.55 E-value=0.079 Score=43.51 Aligned_cols=67 Identities=10% Similarity=0.035 Sum_probs=39.7
Q ss_pred CCCCEEEEcCCCCCC--------cchhhhhhhhcCceEEEeeCCchhhHHHHHHHHHHhhhCCCCeeEEEEccccC
Q 028600 138 GNLDILVIDMPPGTG--------DAQLTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~--------~~~~~~~~~~~~d~vi~v~~~~~~~~~~~~~~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
.+..+.|+|||+... ........+..+|.+++|++....-...-....+.+++.+.++ -+|+||.|.
T Consensus 49 ~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvD~~~~~~~~d~~~~~~l~~~~~pv-ilv~NK~D~ 123 (436)
T 2hjg_A 49 LNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRTKKPV-VLAVNKLDN 123 (436)
T ss_dssp CSSCCEEEC---------CHHHHHHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHTTCCSCE-EEEEECCCC
T ss_pred CCceEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCE-EEEEECccC
Confidence 456789999996421 0112234456799999998876522222234556677777776 589999984
No 322
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=93.52 E-value=0.078 Score=39.04 Aligned_cols=33 Identities=39% Similarity=0.527 Sum_probs=24.3
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d 70 (207)
+.+|+++ +..|+||||++..||..+. ...+|.|
T Consensus 5 ~~~i~i~-G~~GsGKSTl~~~L~~~~g------~~~~d~g 37 (227)
T 1cke_A 5 APVITID-GPSGAGKGTLCKAMAEALQ------WHLLDSG 37 (227)
T ss_dssp SCEEEEE-CCTTSSHHHHHHHHHHHHT------CEEEEHH
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHhC------CCcccCc
Confidence 3578885 7889999999999987543 2456655
No 323
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=93.52 E-value=0.041 Score=44.82 Aligned_cols=66 Identities=9% Similarity=0.122 Sum_probs=41.7
Q ss_pred CCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCchhh-HHHHHHHHHHhhhCCCCeeEEEEccccC
Q 028600 140 LDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDVA-LIDARKGITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 140 ~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~~~-~~~~~~~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
+.+.|+|+|+--.........+..+|.+++|++++... ..++.+.+..++..+.+.+-+++||.|.
T Consensus 81 ~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l~~~~iivv~NK~Dl 147 (408)
T 1s0u_A 81 RRVSFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEILGIDKIIIVQNKIDL 147 (408)
T ss_dssp EEEEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECTTS
T ss_pred cEEEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHcCCCeEEEEEEccCC
Confidence 67999999952110011122233569999999987532 4455555556666676555689999984
No 324
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=93.52 E-value=0.35 Score=40.65 Aligned_cols=38 Identities=13% Similarity=0.165 Sum_probs=28.2
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHH--HHHHHhCCCeEEEEecCC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLA--VALASKCQLKVGLLDADV 71 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA--~~la~~~g~~VlliD~d~ 71 (207)
+.+++++ +..|+||||++..++ -.+. .+..+++|+...
T Consensus 39 Ge~~~l~-G~nGsGKSTL~~~~ll~Gl~~--~~~g~i~v~g~~ 78 (525)
T 1tf7_A 39 GRSTLVS-GTSGTGKTLFSIQFLYNGIIE--FDEPGVFVTFEE 78 (525)
T ss_dssp TSEEEEE-ESTTSSHHHHHHHHHHHHHHH--HCCCEEEEESSS
T ss_pred CeEEEEE-cCCCCCHHHHHHHHHHHHHHh--CCCCEEEEEEeC
Confidence 7788885 788999999999954 3333 366688887654
No 325
>3nrs_A Dihydrofolate:folylpolyglutamate synthetase; structural genomics, center for structural genomics of infec diseases, csgid; HET: TLA MES; 1.80A {Yersinia pestis} PDB: 3n2a_A* 3pyz_A* 3qcz_A*
Probab=93.49 E-value=0.13 Score=42.26 Aligned_cols=35 Identities=31% Similarity=0.481 Sum_probs=31.2
Q ss_pred CCCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEE
Q 028600 29 GVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLL 67 (207)
Q Consensus 29 ~~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~Vlli 67 (207)
...++|.|+++. ||||++.-|+..|.. .|+||.++
T Consensus 50 ~~~~vI~VtGTN---GKgSt~~~l~~iL~~-~G~~vg~~ 84 (437)
T 3nrs_A 50 PAPKIFTVAGTN---GKGTTCCTLEAILLA-AGLRVGVY 84 (437)
T ss_dssp SSSEEEEEECSS---SHHHHHHHHHHHHHH-TTCCEEEE
T ss_pred ccCCEEEEECCc---ChHHHHHHHHHHHHH-CCCcEEEE
Confidence 348899998665 999999999999999 99999886
No 326
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=93.47 E-value=0.074 Score=39.95 Aligned_cols=26 Identities=23% Similarity=0.271 Sum_probs=21.5
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHH
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALA 57 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la 57 (207)
+.+|+++ +..|+||||++..||..+.
T Consensus 27 ~~~i~l~-G~~GsGKSTl~k~La~~lg 52 (246)
T 2bbw_A 27 LLRAVIL-GPPGSGKGTVCQRIAQNFG 52 (246)
T ss_dssp CCEEEEE-CCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEE-CCCCCCHHHHHHHHHHHhC
Confidence 5678875 8889999999999997663
No 327
>3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58}
Probab=93.46 E-value=0.087 Score=41.54 Aligned_cols=32 Identities=41% Similarity=0.383 Sum_probs=28.0
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEE
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGL 66 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~Vll 66 (207)
.++|+|+++ .||||++..++..|.. .|+++.+
T Consensus 108 ~~~IaVTGT---nGKTTTt~ll~~iL~~-~g~~~~~ 139 (326)
T 3eag_A 108 HWVLGVAGT---HGKTTTASMLAWVLEY-AGLAPGF 139 (326)
T ss_dssp SEEEEEESS---SCHHHHHHHHHHHHHH-TTCCCEE
T ss_pred CCEEEEECC---CCHHHHHHHHHHHHHH-cCCCceE
Confidence 689999866 4999999999999999 9998753
No 328
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=93.46 E-value=0.17 Score=35.22 Aligned_cols=66 Identities=14% Similarity=0.055 Sum_probs=40.6
Q ss_pred CCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCchh-hHHHHHHHHHHhhh-------CCCCeeEEEEccccC
Q 028600 139 NLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDV-ALIDARKGITMFSK-------VQVPVCSFLAQIISS 205 (207)
Q Consensus 139 ~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~~-~~~~~~~~l~~l~~-------~~~~~~g~v~N~~~~ 205 (207)
.+.+.|+|+|+.-.........+..+|.+++|.+.... +...+...++.+.. .+.++ -+|+|+.|-
T Consensus 55 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~-i~v~nK~Dl 128 (177)
T 1wms_A 55 FVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPF-VILGNKIDI 128 (177)
T ss_dssp EEEEEEEECCCCGGGHHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCE-EEEEECTTC
T ss_pred EEEEEEEeCCCchhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcE-EEEEECCcc
Confidence 46789999996433222323344568998888776543 44555544444432 34555 589999883
No 329
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=93.42 E-value=0.037 Score=43.71 Aligned_cols=35 Identities=23% Similarity=0.280 Sum_probs=28.6
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d 70 (207)
++++ +..+.+|+|||+++.++|.. .|.+|++++++
T Consensus 123 gsvi-LI~GpPGsGKTtLAlqlA~~----~G~~VlyIs~~ 157 (331)
T 2vhj_A 123 SGMV-IVTGKGNSGKTPLVHALGEA----LGGKDKYATVR 157 (331)
T ss_dssp SEEE-EEECSCSSSHHHHHHHHHHH----HHTTSCCEEEE
T ss_pred CcEE-EEEcCCCCCHHHHHHHHHHh----CCCCEEEEEec
Confidence 4555 45799999999999999986 37789999983
No 330
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=93.40 E-value=0.12 Score=36.34 Aligned_cols=66 Identities=14% Similarity=0.098 Sum_probs=38.0
Q ss_pred CCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCch-hhHHHHHHHHHHhhhC---CCCeeEEEEccccC
Q 028600 139 NLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDARKGITMFSKV---QVPVCSFLAQIISS 205 (207)
Q Consensus 139 ~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~-~~~~~~~~~l~~l~~~---~~~~~g~v~N~~~~ 205 (207)
.+.+.|+|+|+.-.........+..+|.+++|.+... .+...+...+..+.+. +.++ -+|.|+.|-
T Consensus 56 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~pi-ilv~nK~Dl 125 (183)
T 2fu5_C 56 RIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEK-MILGNKCDV 125 (183)
T ss_dssp EEEEEEEEC---------CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEE-EEEEEC--C
T ss_pred EEEEEEEcCCCChhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCE-EEEEECccC
Confidence 4778999999642222222334457899999988764 3566776666666543 3444 688999873
No 331
>2wtz_A UDP-N-acetylmuramoyl-L-alanyl-D-glutamate- -2,6-diaminopimelate ligase; nucleotide-binding, peptidoglycan synthesis, MURE, C shape; HET: KCX UAG; 3.00A {Mycobacterium tuberculosis} PDB: 2xja_A*
Probab=93.36 E-value=0.12 Score=43.74 Aligned_cols=34 Identities=26% Similarity=0.351 Sum_probs=30.2
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEE
Q 028600 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLL 67 (207)
Q Consensus 30 ~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~Vlli 67 (207)
..++|+|+++. ||||++.-|+..|.. .|++|.++
T Consensus 145 ~~~vI~VTGTn---GKTTT~~ml~~iL~~-~G~~~g~~ 178 (535)
T 2wtz_A 145 RLTVIGITGTS---GKTTTTYLVEAGLRA-AGRVAGLI 178 (535)
T ss_dssp SSEEEEEESSS---CHHHHHHHHHHHHHH-TTCCEEEE
T ss_pred cceEEEeeCCC---ChHHHHHHHHHHHHH-CCCCEEEE
Confidence 46899998665 999999999999999 99999876
No 332
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=93.35 E-value=0.2 Score=35.91 Aligned_cols=65 Identities=8% Similarity=0.019 Sum_probs=41.5
Q ss_pred CCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCch-hhHHHHH-HHHHHhhhC--CCCeeEEEEcccc
Q 028600 139 NLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDAR-KGITMFSKV--QVPVCSFLAQIIS 204 (207)
Q Consensus 139 ~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~-~~~~~~~-~~l~~l~~~--~~~~~g~v~N~~~ 204 (207)
.+.+.|+|+|+.-.........+..+|.+++|.+... .+...+. ..++.+.+. +.++ -+|.|+.|
T Consensus 67 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~-ilv~nK~D 135 (201)
T 2q3h_A 67 PVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPI-ILVGTQSD 135 (201)
T ss_dssp EEEEEEEECCCSTTCSSSGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCE-EEEEECGG
T ss_pred EEEEEEEECCCCHHHHHHhHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCE-EEEEECHh
Confidence 4677899999643222222334557899999988754 4555554 455555543 5555 58899987
No 333
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=93.31 E-value=0.12 Score=42.64 Aligned_cols=33 Identities=24% Similarity=0.201 Sum_probs=28.2
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHhCCC-eEEEE
Q 028600 34 IAVASGKGGVGKSTTAVNLAVALASKCQL-KVGLL 67 (207)
Q Consensus 34 I~v~s~kgG~GkTt~a~~LA~~la~~~g~-~Vlli 67 (207)
..+..+.+|+||||++..++..+.+ .|. +|+++
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l~~-~~~~~il~~ 80 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEALIS-TGETGIILA 80 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHH-TTCCCEEEE
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHh-cCCceEEEe
Confidence 4555788999999999999999999 787 77776
No 334
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=93.29 E-value=0.069 Score=37.91 Aligned_cols=25 Identities=36% Similarity=0.418 Sum_probs=20.1
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHH
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVAL 56 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~l 56 (207)
++.|.+ .+..|+||||++..||..+
T Consensus 11 ~~~i~i-~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 11 LPNILL-TGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCEEE-ECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEE-EeCCCCCHHHHHHHHHHHh
Confidence 455666 5889999999999998765
No 335
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=93.29 E-value=0.24 Score=33.85 Aligned_cols=66 Identities=12% Similarity=0.119 Sum_probs=41.6
Q ss_pred CCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCchh-hHHHHHHHHHHhhh----CCCCeeEEEEcccc
Q 028600 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDV-ALIDARKGITMFSK----VQVPVCSFLAQIIS 204 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~~-~~~~~~~~l~~l~~----~~~~~~g~v~N~~~ 204 (207)
..+.+.|+|+|+.-.........+..+|.+++|.+.... +...+...+..+.+ .+.++ -+|+||.|
T Consensus 49 ~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi-ilv~nK~D 119 (167)
T 1kao_A 49 SPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPV-ILVGNKVD 119 (167)
T ss_dssp EEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCE-EEEEECGG
T ss_pred EEEEEEEEECCCchhhHHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCE-EEEEECCc
Confidence 345689999997433223333445578999888876543 55555555544432 35565 58999988
No 336
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=93.26 E-value=0.25 Score=35.14 Aligned_cols=66 Identities=9% Similarity=0.021 Sum_probs=43.2
Q ss_pred CCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCch-hhHHHHHHHHHHhhhC---CCCeeEEEEcccc
Q 028600 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDARKGITMFSKV---QVPVCSFLAQIIS 204 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~-~~~~~~~~~l~~l~~~---~~~~~g~v~N~~~ 204 (207)
..+.+.|+|+|+.-.........+..+|.+++|.+... .+...+...+..+... +.+ +-+|+|+.|
T Consensus 72 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~p-iilv~nK~D 141 (193)
T 2oil_A 72 AAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATIV-VMLVGNKSD 141 (193)
T ss_dssp EEEEEEEEEESCCCTTCTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCE-EEEEEECGG
T ss_pred EEEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCe-EEEEEECCC
Confidence 45678999999643322333445567999999988754 3555566666666543 334 468899987
No 337
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=93.23 E-value=0.078 Score=41.09 Aligned_cols=35 Identities=17% Similarity=0.205 Sum_probs=27.2
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d 70 (207)
++.+.+ .+.+|+|||+++..+|..+ |.+++.+++.
T Consensus 36 p~~lLl-~GppGtGKT~la~aiA~~l----~~~~i~v~~~ 70 (293)
T 3t15_A 36 PLILGI-WGGKGQGKSFQCELVFRKM----GINPIMMSAG 70 (293)
T ss_dssp CSEEEE-EECTTSCHHHHHHHHHHHH----TCCCEEEEHH
T ss_pred CeEEEE-ECCCCCCHHHHHHHHHHHh----CCCEEEEeHH
Confidence 445555 5889999999999998866 6788888763
No 338
>2vos_A Folylpolyglutamate synthase protein FOLC; ligase, peptidoglycan synthesis, cell division; HET: ADP; 2.0A {Mycobacterium tuberculosis} PDB: 2vor_A*
Probab=93.22 E-value=0.12 Score=43.22 Aligned_cols=34 Identities=18% Similarity=0.220 Sum_probs=30.3
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEE
Q 028600 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLL 67 (207)
Q Consensus 30 ~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~Vlli 67 (207)
..++|+|+++. ||||++.-|+..|.. .|++|.++
T Consensus 63 ~~~vI~VtGTN---GKtST~~~l~~iL~~-~G~~vG~~ 96 (487)
T 2vos_A 63 SYPSIHIAGTN---GKTSVARMVDALVTA-LHRRTGRT 96 (487)
T ss_dssp SSCEEEEECSS---SHHHHHHHHHHHHHH-TTCCEEEE
T ss_pred cCeEEEEeCCC---CcHHHHHHHHHHHHH-cCCCeEEE
Confidence 46899998775 999999999999999 99999766
No 339
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=93.22 E-value=0.14 Score=36.74 Aligned_cols=66 Identities=9% Similarity=0.116 Sum_probs=41.2
Q ss_pred CCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCch-hhHHHHHHHHHHhhhC---CCCeeEEEEccccC
Q 028600 139 NLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDARKGITMFSKV---QVPVCSFLAQIISS 205 (207)
Q Consensus 139 ~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~-~~~~~~~~~l~~l~~~---~~~~~g~v~N~~~~ 205 (207)
.+.+.|+|+|+.-.........+..+|.+++|.+... .+...+...+..+... +.++ -+|.||.|-
T Consensus 81 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~-ilv~nK~Dl 150 (199)
T 3l0i_B 81 TIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNK-LLVGNKCDL 150 (199)
T ss_dssp EEEEEEECCTTCTTCCCCSCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEE-EEC-CCSSC
T ss_pred EEEEEEEECCCcHhHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCE-EEEEECccC
Confidence 4678999999743222222344557899999988664 4566777777776654 3444 588899883
No 340
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=93.19 E-value=0.09 Score=39.14 Aligned_cols=34 Identities=26% Similarity=0.254 Sum_probs=25.1
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecC
Q 028600 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70 (207)
Q Consensus 30 ~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d 70 (207)
.++.|.| .+..|+||||++..||..+. . .++++|
T Consensus 15 ~~~~I~l-~G~~GsGKsT~a~~La~~l~----~--~~i~~d 48 (233)
T 1ak2_A 15 KGVRAVL-LGPPGAGKGTQAPKLAKNFC----V--CHLATG 48 (233)
T ss_dssp CCCEEEE-ECCTTSSHHHHHHHHHHHHT----C--EEEEHH
T ss_pred CCeEEEE-ECCCCCCHHHHHHHHHHHhC----C--ceecHH
Confidence 3566777 47789999999999998763 2 456664
No 341
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=93.17 E-value=0.069 Score=38.08 Aligned_cols=25 Identities=20% Similarity=0.369 Sum_probs=20.9
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHH
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVAL 56 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~l 56 (207)
++++++ .+..|+||||++..|+..+
T Consensus 5 g~~i~i-~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 5 RKTLVL-LGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CCEEEE-ECCTTSSHHHHHHHHHHHC
T ss_pred CCEEEE-ECCCCCCHHHHHHHHHhhC
Confidence 677777 5888999999999998765
No 342
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=93.16 E-value=0.091 Score=43.26 Aligned_cols=39 Identities=15% Similarity=0.259 Sum_probs=31.6
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhC--CCeEEEEecCC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKC--QLKVGLLDADV 71 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~--g~~VlliD~d~ 71 (207)
..-+.+ .+..|+||||++..+|..+.. . +.+++.+++..
T Consensus 130 ~~~lll-~Gp~G~GKTtLa~aia~~l~~-~~~~~~v~~v~~~~ 170 (440)
T 2z4s_A 130 YNPLFI-YGGVGLGKTHLLQSIGNYVVQ-NEPDLRVMYITSEK 170 (440)
T ss_dssp SCCEEE-ECSSSSSHHHHHHHHHHHHHH-HCCSSCEEEEEHHH
T ss_pred CCeEEE-ECCCCCCHHHHHHHHHHHHHH-hCCCCeEEEeeHHH
Confidence 345555 588999999999999999987 5 88999988753
No 343
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=93.12 E-value=0.071 Score=39.14 Aligned_cols=33 Identities=36% Similarity=0.551 Sum_probs=24.5
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~ 71 (207)
+.+|++ .+..|+||||++..||. .|. .++|+|.
T Consensus 4 ~~~I~i-~G~~GSGKST~~~~L~~-----lg~--~~id~D~ 36 (218)
T 1vht_A 4 RYIVAL-TGGIGSGKSTVANAFAD-----LGI--NVIDADI 36 (218)
T ss_dssp CEEEEE-ECCTTSCHHHHHHHHHH-----TTC--EEEEHHH
T ss_pred ceEEEE-ECCCCCCHHHHHHHHHH-----cCC--EEEEccH
Confidence 467777 58889999999888865 464 5677763
No 344
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=93.09 E-value=0.093 Score=38.04 Aligned_cols=34 Identities=29% Similarity=0.387 Sum_probs=26.6
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~ 71 (207)
+++|+++ +..|+||||++..|+..+ | ..++|.|.
T Consensus 29 g~~i~l~-G~~GsGKSTl~~~L~~~~----g--~~~i~~d~ 62 (200)
T 4eun_A 29 TRHVVVM-GVSGSGKTTIAHGVADET----G--LEFAEADA 62 (200)
T ss_dssp CCEEEEE-CCTTSCHHHHHHHHHHHH----C--CEEEEGGG
T ss_pred CcEEEEE-CCCCCCHHHHHHHHHHhh----C--CeEEcccc
Confidence 6678875 888999999999999876 4 35677664
No 345
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=93.07 E-value=0.14 Score=41.38 Aligned_cols=33 Identities=30% Similarity=0.229 Sum_probs=29.2
Q ss_pred eCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCC
Q 028600 38 SGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (207)
Q Consensus 38 s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~ 71 (207)
-+..|+||||+...++..+.. .|.+++++|-+.
T Consensus 41 ~G~~G~GKs~~~~~~~~~~~~-~~~~~~~~D~~~ 73 (392)
T 4ag6_A 41 LAKPGAGKSFTAKMLLLREYM-QGSRVIIIDPER 73 (392)
T ss_dssp ECCTTSSHHHHHHHHHHHHHT-TTCCEEEEESSC
T ss_pred EcCCCCCHHHHHHHHHHHHHH-CCCEEEEEeCCc
Confidence 478899999999999999988 899999998654
No 346
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=93.07 E-value=0.052 Score=40.22 Aligned_cols=33 Identities=21% Similarity=0.304 Sum_probs=23.9
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d 70 (207)
++.|.++ +..|+||||++..||..+ |. ..+|.|
T Consensus 7 ~~~I~l~-G~~GsGKsT~a~~La~~l----~~--~~i~~d 39 (227)
T 1zd8_A 7 LLRAVIM-GAPGSGKGTVSSRITTHF----EL--KHLSSG 39 (227)
T ss_dssp CCEEEEE-ECTTSSHHHHHHHHHHHS----SS--EEEEHH
T ss_pred CcEEEEE-CCCCCCHHHHHHHHHHHc----CC--eEEech
Confidence 5677774 778999999999988743 44 355554
No 347
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=93.06 E-value=0.072 Score=45.25 Aligned_cols=40 Identities=38% Similarity=0.369 Sum_probs=32.5
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~ 71 (207)
+.+|+++ +..|+||||++..||..+....|.++.++|.|.
T Consensus 369 G~iI~Li-G~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~ 408 (552)
T 3cr8_A 369 GFTVFFT-GLSGAGKSTLARALAARLMEMGGRCVTLLDGDI 408 (552)
T ss_dssp CEEEEEE-ESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHH
T ss_pred ceEEEEE-CCCCChHHHHHHHHHHhhcccCCceEEEECCcH
Confidence 6788886 678999999999999999873446788888764
No 348
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=93.05 E-value=0.061 Score=39.65 Aligned_cols=26 Identities=15% Similarity=0.188 Sum_probs=20.8
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHH
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALA 57 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la 57 (207)
++.|.|. +..|+||||++..||..+.
T Consensus 5 ~~~I~l~-G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 5 PLKVMIS-GAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp SCCEEEE-ESTTSSHHHHHHHHHHHHC
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHHhC
Confidence 5667774 6789999999999998653
No 349
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=93.04 E-value=0.12 Score=40.05 Aligned_cols=38 Identities=24% Similarity=0.305 Sum_probs=29.8
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCC----eEEEEecC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQL----KVGLLDAD 70 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~----~VlliD~d 70 (207)
+.-+.+ .+.+|+|||+++..+|..+.. .+. +++.+++.
T Consensus 67 ~~~vll-~G~~GtGKT~la~~la~~l~~-~~~~~~~~~~~~~~~ 108 (309)
T 3syl_A 67 TLHMSF-TGNPGTGKTTVALKMAGLLHR-LGYVRKGHLVSVTRD 108 (309)
T ss_dssp CCEEEE-EECTTSSHHHHHHHHHHHHHH-TTSSSSCCEEEECGG
T ss_pred CceEEE-ECCCCCCHHHHHHHHHHHHHh-cCCcCCCcEEEEcHH
Confidence 445666 578999999999999999988 665 67777654
No 350
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=93.04 E-value=0.31 Score=35.04 Aligned_cols=67 Identities=12% Similarity=0.244 Sum_probs=42.4
Q ss_pred CCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCch-hhHHHHHHHHHHhhh----CCCCeeEEEEccccC
Q 028600 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDARKGITMFSK----VQVPVCSFLAQIISS 205 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~-~~~~~~~~~l~~l~~----~~~~~~g~v~N~~~~ 205 (207)
.++.+.++|+|+.-............+|.+++|.+... .+...+...+..+.+ .+.++ -+|.||.|-
T Consensus 67 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~pi-ilv~NK~Dl 138 (198)
T 1f6b_A 67 AGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPI-LILGNKIDR 138 (198)
T ss_dssp TTEEEEEEEECC----CCGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCE-EEEEECTTS
T ss_pred CCEEEEEEECCCcHhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcE-EEEEECCCc
Confidence 34788999999643222232334557999999988754 456666666655533 35565 589999884
No 351
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=93.01 E-value=0.054 Score=39.26 Aligned_cols=35 Identities=29% Similarity=0.448 Sum_probs=25.9
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecC
Q 028600 34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70 (207)
Q Consensus 34 I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d 70 (207)
+.+ .+.+|+|||+++..++..+.. .+..+.++..+
T Consensus 41 ~ll-~G~~G~GKT~l~~~l~~~~~~-~~~~~~~~~~~ 75 (226)
T 2chg_A 41 LLF-SGPPGTGKTATAIALARDLFG-ENWRDNFIEMN 75 (226)
T ss_dssp EEE-ECSTTSSHHHHHHHHHHHHHG-GGGGGGEEEEE
T ss_pred EEE-ECCCCCCHHHHHHHHHHHHhc-cccccceEEec
Confidence 545 688999999999999999876 55554444443
No 352
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=92.99 E-value=0.34 Score=37.11 Aligned_cols=63 Identities=17% Similarity=0.182 Sum_probs=41.0
Q ss_pred CCCEEEEcCCCCCCcc------hhhhhhh--hcCceEEEeeCCchhhHHHHHHHHHHhhhCCCCeeEEEEcccc
Q 028600 139 NLDILVIDMPPGTGDA------QLTTTQT--LQLSGALIVSTPQDVALIDARKGITMFSKVQVPVCSFLAQIIS 204 (207)
Q Consensus 139 ~~D~IiiD~~~~~~~~------~~~~~~~--~~~d~vi~v~~~~~~~~~~~~~~l~~l~~~~~~~~g~v~N~~~ 204 (207)
.+.+.|+|+|+..+.. ......+ ..+|.+++|++... .+.......++.+.+.++ -+++|+.|
T Consensus 48 ~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~vi~V~D~t~--~e~~~~~~~~l~~~~~p~-ilv~NK~D 118 (272)
T 3b1v_A 48 NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQRADSILNVVDATN--LERNLYLTTQLIETGIPV-TIALNMID 118 (272)
T ss_dssp CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTTCCSEEEEEEEGGG--HHHHHHHHHHHHHTCSCE-EEEEECHH
T ss_pred CCeEEEEECCCcCccCCCChHHHHHHHHHhcCCCCEEEEEecCCc--hHhHHHHHHHHHhcCCCE-EEEEEChh
Confidence 4678999999743321 1112222 25899999998765 344455666677777786 48899976
No 353
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=92.99 E-value=0.17 Score=35.86 Aligned_cols=67 Identities=13% Similarity=0.028 Sum_probs=42.2
Q ss_pred CCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCch-hhHHHHHHHHHHhhh----CCCCeeEEEEccccC
Q 028600 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDARKGITMFSK----VQVPVCSFLAQIISS 205 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~-~~~~~~~~~l~~l~~----~~~~~~g~v~N~~~~ 205 (207)
..+.+.++|+|+.-.........+..+|.+++|.+... .+...+...+..+.+ .+.+ +-+|+||.|-
T Consensus 64 ~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl 135 (189)
T 2x77_A 64 KNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSL-LLIFANKQDL 135 (189)
T ss_dssp TTEEEEEEEECCSSSSCCCCSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCE-EEEEEECTTS
T ss_pred CCEEEEEEECCCCHhHHHHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCe-EEEEEECCCC
Confidence 35678999999643222222333457899999988764 356666655555433 2444 4689999883
No 354
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=92.95 E-value=0.089 Score=41.81 Aligned_cols=39 Identities=21% Similarity=0.147 Sum_probs=31.1
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhC------CCeEEEEecCC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKC------QLKVGLLDADV 71 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~------g~~VlliD~d~ 71 (207)
++.+.+ .+.+|+||||++..++..+.. . +..++.+++..
T Consensus 44 ~~~vll-~G~~G~GKT~l~~~~~~~~~~-~~~~~~~~~~~~~i~~~~ 88 (387)
T 2v1u_A 44 PSNALL-YGLTGTGKTAVARLVLRRLEA-RASSLGVLVKPIYVNARH 88 (387)
T ss_dssp CCCEEE-CBCTTSSHHHHHHHHHHHHHH-HHHHHTCCEEEEEEETTT
T ss_pred CCcEEE-ECCCCCCHHHHHHHHHHHHHH-HHhccCCCeEEEEEECCc
Confidence 455555 689999999999999999877 4 67778887654
No 355
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=92.95 E-value=0.076 Score=40.27 Aligned_cols=38 Identities=21% Similarity=0.186 Sum_probs=31.1
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCC
Q 028600 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (207)
Q Consensus 33 ~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~ 72 (207)
-+.+ .+..|+|||+++..++..+.+ .+.+++.+++...
T Consensus 31 ~vll-~G~~GtGKt~la~~i~~~~~~-~~~~~~~v~~~~~ 68 (265)
T 2bjv_A 31 PVLI-IGERGTGKELIASRLHYLSSR-WQGPFISLNCAAL 68 (265)
T ss_dssp CEEE-ECCTTSCHHHHHHHHHHTSTT-TTSCEEEEEGGGS
T ss_pred CEEE-ECCCCCcHHHHHHHHHHhcCc-cCCCeEEEecCCC
Confidence 3445 588999999999999988777 7788999988653
No 356
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=92.94 E-value=0.054 Score=39.54 Aligned_cols=67 Identities=10% Similarity=0.063 Sum_probs=43.1
Q ss_pred CCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCch-hhHHHHHHHHHHhhhC----CCCeeEEEEccccC
Q 028600 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDARKGITMFSKV----QVPVCSFLAQIISS 205 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~-~~~~~~~~~l~~l~~~----~~~~~g~v~N~~~~ 205 (207)
..+.+.|+|+|+.-.........+..+|.+++|++... .+...+...++.+... +.+ +-+|+||.|-
T Consensus 82 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~~p-iilV~NK~Dl 153 (217)
T 2f7s_A 82 FKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPD-IVLIGNKADL 153 (217)
T ss_dssp EEEEEEEEEEESHHHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHHTCCCCCTTTCCE-EEEEEECTTC
T ss_pred eeEEEEEEECCCcHhHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCC-EEEEEECCcc
Confidence 36789999999632212233444557999999988754 4556666666655542 334 4688999873
No 357
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=92.92 E-value=0.099 Score=37.89 Aligned_cols=66 Identities=12% Similarity=0.069 Sum_probs=42.4
Q ss_pred CCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCch-hhHHHHH-HHHHHhhhC--CCCeeEEEEcccc
Q 028600 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDAR-KGITMFSKV--QVPVCSFLAQIIS 204 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~-~~~~~~~-~~l~~l~~~--~~~~~g~v~N~~~ 204 (207)
..+.+.|+|+|+.-.........+..+|.+++|.+... .+...+. ..+..+.+. +.++ -+|.||.|
T Consensus 76 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi-ilv~nK~D 145 (204)
T 4gzl_A 76 KPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPI-ILVGTKLD 145 (204)
T ss_dssp CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCE-EEEEECHH
T ss_pred EEEEEEEEECCCchhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCE-EEEEechh
Confidence 45677899999642222233334557899999988654 3555554 455566554 5555 58889987
No 358
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=92.89 E-value=0.093 Score=37.78 Aligned_cols=24 Identities=38% Similarity=0.520 Sum_probs=19.4
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 028600 33 VIAVASGKGGVGKSTTAVNLAVALA 57 (207)
Q Consensus 33 ~I~v~s~kgG~GkTt~a~~LA~~la 57 (207)
.|++ .+..|+||||++..||..+.
T Consensus 2 ~I~i-~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAI-FGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEE-ECCTTSCHHHHHHHHHHHHC
T ss_pred EEEE-ECCCccCHHHHHHHHHHhcC
Confidence 4566 47789999999999998664
No 359
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=92.88 E-value=0.32 Score=34.67 Aligned_cols=67 Identities=18% Similarity=0.268 Sum_probs=43.3
Q ss_pred CCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCchh-hHHHHHHHHHHhhh----CCCCeeEEEEccccC
Q 028600 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDV-ALIDARKGITMFSK----VQVPVCSFLAQIISS 205 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~~-~~~~~~~~l~~l~~----~~~~~~g~v~N~~~~ 205 (207)
.++.+.++|+|+..............+|.+++|.+.... +...+...+..+.+ .+.++ -+|.||.|-
T Consensus 65 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pi-ilv~NK~Dl 136 (190)
T 1m2o_B 65 GNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPF-VILGNKIDA 136 (190)
T ss_dssp TTEEEEEEECCCSGGGTTSGGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCE-EEEEECTTS
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCE-EEEEECCCC
Confidence 346789999996422212223334578999999887654 56666666655533 35555 689999874
No 360
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=92.88 E-value=0.08 Score=37.82 Aligned_cols=35 Identities=31% Similarity=0.349 Sum_probs=26.0
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d 70 (207)
+++|++ .+..|+||||++..||.. .+...+.+|.|
T Consensus 9 g~~i~l-~G~~GsGKSTl~~~La~~----~~~g~i~i~~d 43 (191)
T 1zp6_A 9 GNILLL-SGHPGSGKSTIAEALANL----PGVPKVHFHSD 43 (191)
T ss_dssp TEEEEE-EECTTSCHHHHHHHHHTC----SSSCEEEECTT
T ss_pred CeEEEE-ECCCCCCHHHHHHHHHhc----cCCCeEEEccc
Confidence 677877 478899999999988764 34445667655
No 361
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=92.88 E-value=0.15 Score=37.93 Aligned_cols=35 Identities=23% Similarity=0.303 Sum_probs=27.9
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEE
Q 028600 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLL 67 (207)
Q Consensus 30 ~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~Vlli 67 (207)
+++.|+|. +-.|+||||++..|+..+.. |.+|+..
T Consensus 25 ~g~~i~i~-G~~GsGKsT~~~~l~~~l~~--~~~~~~~ 59 (229)
T 4eaq_A 25 MSAFITFE-GPEGSGKTTVINEVYHRLVK--DYDVIMT 59 (229)
T ss_dssp CCEEEEEE-CCTTSCHHHHHHHHHHHHTT--TSCEEEE
T ss_pred CCeEEEEE-cCCCCCHHHHHHHHHHHHhc--CCCceee
Confidence 37788884 77889999999999998875 6677544
No 362
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=92.86 E-value=0.12 Score=38.93 Aligned_cols=25 Identities=28% Similarity=0.345 Sum_probs=20.6
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHH
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVAL 56 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~l 56 (207)
+..|.+ .+..|+||||++..|+..+
T Consensus 29 ~~~I~l-~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 29 DGRYIF-LGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CEEEEE-ECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEE-ECCCCCCHHHHHHHHHHHh
Confidence 566766 5888999999999998765
No 363
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=92.81 E-value=0.14 Score=43.03 Aligned_cols=39 Identities=15% Similarity=0.242 Sum_probs=33.1
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~ 71 (207)
+.++++ .+..|+||||++..++..++. .|.+++++....
T Consensus 281 G~i~~i-~G~~GsGKSTLl~~l~g~~~~-~G~~vi~~~~ee 319 (525)
T 1tf7_A 281 DSIILA-TGATGTGKTLLVSRFVENACA-NKERAILFAYEE 319 (525)
T ss_dssp SCEEEE-EECTTSSHHHHHHHHHHHHHT-TTCCEEEEESSS
T ss_pred CcEEEE-EeCCCCCHHHHHHHHHHHHHh-CCCCEEEEEEeC
Confidence 567777 588999999999999999998 899998887643
No 364
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=92.80 E-value=0.17 Score=40.27 Aligned_cols=37 Identities=16% Similarity=0.184 Sum_probs=30.9
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHhC-CCeEEEEecCC
Q 028600 33 VIAVASGKGGVGKSTTAVNLAVALASKC-QLKVGLLDADV 71 (207)
Q Consensus 33 ~I~v~s~kgG~GkTt~a~~LA~~la~~~-g~~VlliD~d~ 71 (207)
.+.+ .+..|+||||++..++..+.. . +..++.+++..
T Consensus 46 ~~li-~G~~G~GKTtl~~~l~~~~~~-~~~~~~~~i~~~~ 83 (389)
T 1fnn_A 46 RATL-LGRPGTGKTVTLRKLWELYKD-KTTARFVYINGFI 83 (389)
T ss_dssp EEEE-ECCTTSSHHHHHHHHHHHHTT-SCCCEEEEEETTT
T ss_pred eEEE-ECCCCCCHHHHHHHHHHHHhh-hcCeeEEEEeCcc
Confidence 5666 688999999999999998877 6 68888888754
No 365
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=92.76 E-value=0.088 Score=44.57 Aligned_cols=24 Identities=25% Similarity=0.285 Sum_probs=20.3
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHH
Q 028600 30 VKDVIAVASGKGGVGKSTTAVNLAV 54 (207)
Q Consensus 30 ~~k~I~v~s~kgG~GkTt~a~~LA~ 54 (207)
..++|+| .+.||+||||+|..++.
T Consensus 151 ~~~vv~I-~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 151 DSFFLFL-HGRAGSGKSVIASQALS 174 (549)
T ss_dssp SSEEEEE-ECSTTSSHHHHHHHHHH
T ss_pred CceEEEE-EcCCCCCHHHHHHHHHH
Confidence 3678888 58899999999998885
No 366
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=92.73 E-value=0.18 Score=36.01 Aligned_cols=66 Identities=12% Similarity=0.143 Sum_probs=42.8
Q ss_pred CCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCch-hhHHHHHHHHHHhhhC---CCCeeEEEEcccc
Q 028600 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDARKGITMFSKV---QVPVCSFLAQIIS 204 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~-~~~~~~~~~l~~l~~~---~~~~~g~v~N~~~ 204 (207)
..+.+.|+|+|+.-.........+..+|.+++|.+... .+...+...++.+... +.++ -+|.||.|
T Consensus 73 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~pi-ilV~NK~D 142 (192)
T 2il1_A 73 KKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAEL-LLVGNKLD 142 (192)
T ss_dssp EEEEEEEEEECCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEE-EEEEECGG
T ss_pred eEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcE-EEEEECcc
Confidence 34788999999643322333444557999999988764 3555555555555543 4444 68999987
No 367
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=92.71 E-value=0.25 Score=34.43 Aligned_cols=65 Identities=9% Similarity=0.118 Sum_probs=42.2
Q ss_pred CCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCch-hhHHHHHHHHHHhhhC--CCCeeEEEEcccc
Q 028600 139 NLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDARKGITMFSKV--QVPVCSFLAQIIS 204 (207)
Q Consensus 139 ~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~-~~~~~~~~~l~~l~~~--~~~~~g~v~N~~~ 204 (207)
.+.+.|+|+|+.-.........+..+|.+++|.+... .+...+...+..+.+. +.++ -+|+|+.|
T Consensus 57 ~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~-ilv~nK~D 124 (181)
T 3tw8_B 57 KVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCR-ILVGNKND 124 (181)
T ss_dssp EEEEEEEEETTGGGCSSCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHCTTSEE-EEEEECTT
T ss_pred EEEEEEEcCCCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCE-EEEEECCC
Confidence 3678999999732211222344557899999988654 4566666666666543 2444 58899988
No 368
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=92.71 E-value=0.078 Score=40.24 Aligned_cols=34 Identities=26% Similarity=0.360 Sum_probs=26.1
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~ 71 (207)
++.|+++ +..|+||||++..||..+.. -++|.|.
T Consensus 48 g~~i~l~-G~~GsGKSTl~~~La~~lg~------~~~d~d~ 81 (250)
T 3nwj_A 48 GRSMYLV-GMMGSGKTTVGKIMARSLGY------TFFDCDT 81 (250)
T ss_dssp TCCEEEE-CSTTSCHHHHHHHHHHHHTC------EEEEHHH
T ss_pred CCEEEEE-CCCCCCHHHHHHHHHHhcCC------cEEeCcH
Confidence 5577774 88899999999999986643 5677664
No 369
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=92.70 E-value=0.17 Score=41.91 Aligned_cols=38 Identities=16% Similarity=0.128 Sum_probs=30.6
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecC
Q 028600 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70 (207)
Q Consensus 32 k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d 70 (207)
+.+.+.-+-.|+||||++..||..+.. .+.++..++.|
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~~-~~~~t~~~~~d 76 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLNF-IGVPTREFNVG 76 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHhc-cCCCceEEecc
Confidence 344444688999999999999999988 88888877654
No 370
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=92.66 E-value=0.14 Score=37.60 Aligned_cols=40 Identities=28% Similarity=0.282 Sum_probs=30.4
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHh-----CCCeEEEEecCC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASK-----CQLKVGLLDADV 71 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~-----~g~~VlliD~d~ 71 (207)
+.+++++ +..|+||||++..|+..+... .+.+++.++...
T Consensus 25 G~~~~l~-G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~ 69 (231)
T 4a74_A 25 QAITEVF-GEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 69 (231)
T ss_dssp SEEEEEE-ESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred CcEEEEE-CCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCC
Confidence 6788885 788999999999999865531 155688888754
No 371
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=92.62 E-value=0.067 Score=38.96 Aligned_cols=25 Identities=28% Similarity=0.395 Sum_probs=20.5
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHH
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVAL 56 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~l 56 (207)
+++|++ .+..|+||||++..|+..+
T Consensus 12 ~~~i~l-~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 12 IPPLVV-CGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCEEE-ECCTTSCHHHHHHHHHHHC
T ss_pred CCEEEE-ECCCCCCHHHHHHHHHHhC
Confidence 567777 4778999999999998765
No 372
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=92.57 E-value=0.42 Score=34.75 Aligned_cols=41 Identities=17% Similarity=0.097 Sum_probs=31.7
Q ss_pred CCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecC
Q 028600 28 DGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70 (207)
Q Consensus 28 ~~~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d 70 (207)
..+++++.++ +.-|+||||-....+.-+.. .|++|+++...
T Consensus 17 ~~~g~l~fiy-G~MgsGKTt~Ll~~i~n~~~-~~~kvl~~kp~ 57 (195)
T 1w4r_A 17 KTRGQIQVIL-GPMFSGKSTELMRRVRRFQI-AQYKCLVIKYA 57 (195)
T ss_dssp --CCEEEEEE-ECTTSCHHHHHHHHHHHHHH-TTCCEEEEEET
T ss_pred CCceEEEEEE-CCCCCcHHHHHHHHHHHHHH-cCCeEEEEccc
Confidence 3447766665 55679999988888888888 89999999744
No 373
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=92.55 E-value=0.19 Score=36.40 Aligned_cols=65 Identities=6% Similarity=0.006 Sum_probs=41.5
Q ss_pred CCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCch-hhHHHHHHHHHHhhhC---CCCeeEEEEcccc
Q 028600 139 NLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDARKGITMFSKV---QVPVCSFLAQIIS 204 (207)
Q Consensus 139 ~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~-~~~~~~~~~l~~l~~~---~~~~~g~v~N~~~ 204 (207)
.+.+.|+|+|+.-.........+..+|.+++|.+... .+...+...++.+.+. +.+ +-+|.||.|
T Consensus 74 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~p-iilv~NK~D 142 (201)
T 2ew1_A 74 KVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVI-TVLVGNKID 142 (201)
T ss_dssp EEEEEEEEECCSGGGHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCE-EEEEEECGG
T ss_pred EEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCC-EEEEEECCC
Confidence 4678999999643222233344557899999988653 4555566666655543 334 458889987
No 374
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=92.54 E-value=0.11 Score=36.18 Aligned_cols=32 Identities=31% Similarity=0.296 Sum_probs=23.5
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCC
Q 028600 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (207)
Q Consensus 33 ~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~ 71 (207)
.|.+ .+..|+||||++..|+..+ |.+ ++|+|.
T Consensus 2 ~I~l-~G~~GsGKsT~a~~L~~~l----~~~--~i~~d~ 33 (168)
T 2pt5_A 2 RIYL-IGFMCSGKSTVGSLLSRSL----NIP--FYDVDE 33 (168)
T ss_dssp EEEE-ESCTTSCHHHHHHHHHHHH----TCC--EEEHHH
T ss_pred eEEE-ECCCCCCHHHHHHHHHHHh----CCC--EEECcH
Confidence 4566 5888999999999998865 333 567664
No 375
>3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae}
Probab=92.53 E-value=0.19 Score=41.39 Aligned_cols=33 Identities=24% Similarity=0.292 Sum_probs=28.3
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEE
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLL 67 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~Vlli 67 (207)
.++|+|+++. ||||++..++..|.. .|+++.+.
T Consensus 112 ~~~IaVTGTn---GKTTTt~ml~~iL~~-~g~~~~~~ 144 (451)
T 3lk7_A 112 SQLIGITGSN---GKTTTTTMIAEVLNA-GGQRGLLA 144 (451)
T ss_dssp SEEEEEECSS---CHHHHHHHHHHHHHH-TTCCEEEE
T ss_pred CCEEEEECCC---CHHHHHHHHHHHHHh-cCCCEEEe
Confidence 5899998665 799999999999999 99887543
No 376
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=92.49 E-value=0.24 Score=37.57 Aligned_cols=64 Identities=11% Similarity=0.052 Sum_probs=42.2
Q ss_pred CCCCEEEEcCCCCCCcch------hhhhhh--hcCceEEEeeCCchhhHHHHHHHHHHhhhCCCCeeEEEEcccc
Q 028600 138 GNLDILVIDMPPGTGDAQ------LTTTQT--LQLSGALIVSTPQDVALIDARKGITMFSKVQVPVCSFLAQIIS 204 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~------~~~~~~--~~~d~vi~v~~~~~~~~~~~~~~l~~l~~~~~~~~g~v~N~~~ 204 (207)
..+.+.|+|+|+..+... .....+ ..+|.+++|++.... +.......++.+.+.++ -+++|+.|
T Consensus 50 ~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~ii~V~D~t~~--~~~~~~~~~l~~~~~pv-ilv~NK~D 121 (258)
T 3a1s_A 50 KGYTINLIDLPGTYSLGYSSIDEKIARDYLLKGDADLVILVADSVNP--EQSLYLLLEILEMEKKV-ILAMTAID 121 (258)
T ss_dssp TTEEEEEEECCCCSSCCSSSHHHHHHHHHHHHSCCSEEEEEEETTSC--HHHHHHHHHHHTTTCCE-EEEEECHH
T ss_pred CCeEEEEEECCCcCccCCCCHHHHHHHHHHhhcCCCEEEEEeCCCch--hhHHHHHHHHHhcCCCE-EEEEECcC
Confidence 457899999997432211 111122 368999999988753 33445666777778886 58999986
No 377
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=92.44 E-value=0.11 Score=38.02 Aligned_cols=26 Identities=23% Similarity=0.331 Sum_probs=21.0
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHH
Q 028600 30 VKDVIAVASGKGGVGKSTTAVNLAVAL 56 (207)
Q Consensus 30 ~~k~I~v~s~kgG~GkTt~a~~LA~~l 56 (207)
.+++|++ ++..|+||||+...|+..+
T Consensus 18 ~g~~ivl-~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 18 GRKTLVL-IGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp SCCEEEE-ECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEE-ECcCCCCHHHHHHHHHhhC
Confidence 4677777 6888999999999888654
No 378
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=92.34 E-value=0.052 Score=44.88 Aligned_cols=66 Identities=5% Similarity=-0.008 Sum_probs=45.6
Q ss_pred CCCEEEEcCCCCC---------Ccch--hhhhhhhcCceEEEeeCCchhhHHHHHHHHHHhhhCCCCeeEEEEccccC
Q 028600 139 NLDILVIDMPPGT---------GDAQ--LTTTQTLQLSGALIVSTPQDVALIDARKGITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 139 ~~D~IiiD~~~~~---------~~~~--~~~~~~~~~d~vi~v~~~~~~~~~~~~~~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
+..+.|+|||+-. .... .....+..+|.+++|++....-.......+..+.+.+.++ -+|+||+|-
T Consensus 242 ~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~llviD~~~~~~~~~~~~~~~~~~~~~~~-ilv~NK~Dl 318 (456)
T 4dcu_A 242 QQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAV-VIVVNKWDA 318 (456)
T ss_dssp TEEEEETTGGGTTTBTTBCCCCSHHHHHHHHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEE-EEEEECGGG
T ss_pred CceEEEEECCCCCcCcccchHHHHHHHHHHHHHHhhCCEEEEEEeCCCCcCHHHHHHHHHHHHcCCCE-EEEEEChhc
Confidence 4568999999621 1111 1233455799999999988755566667777777777776 589999983
No 379
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=92.34 E-value=0.29 Score=37.25 Aligned_cols=39 Identities=23% Similarity=0.296 Sum_probs=30.0
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d 70 (207)
+.+++++ +..|+||||+...|+..+......++.+.+-+
T Consensus 25 g~~v~i~-Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~ 63 (261)
T 2eyu_A 25 MGLILVT-GPTGSGKSTTIASMIDYINQTKSYHIITIEDP 63 (261)
T ss_dssp SEEEEEE-CSTTCSHHHHHHHHHHHHHHHCCCEEEEEESS
T ss_pred CCEEEEE-CCCCccHHHHHHHHHHhCCCCCCCEEEEcCCc
Confidence 6788885 77799999999999999877215577766644
No 380
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=92.33 E-value=0.17 Score=40.69 Aligned_cols=37 Identities=22% Similarity=0.229 Sum_probs=29.7
Q ss_pred EEEE--eCCCCCcHHHHHHHHHHHHHHhC------CCeEEEEecCC
Q 028600 34 IAVA--SGKGGVGKSTTAVNLAVALASKC------QLKVGLLDADV 71 (207)
Q Consensus 34 I~v~--s~kgG~GkTt~a~~LA~~la~~~------g~~VlliD~d~ 71 (207)
..+. .+.+|+||||++..++..+.. . +..++.+++..
T Consensus 52 ~~li~i~G~~G~GKT~L~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 96 (412)
T 1w5s_A 52 NMIYGSIGRVGIGKTTLAKFTVKRVSE-AAAKEGLTVKQAYVNAFN 96 (412)
T ss_dssp EEEEECTTCCSSSHHHHHHHHHHHHHH-HHHHTTCCEEEEEEEGGG
T ss_pred EEEEeCcCcCCCCHHHHHHHHHHHHHH-HHhccCCceeEEEEECCC
Confidence 4444 699999999999999998876 3 67788888753
No 381
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=92.30 E-value=0.26 Score=36.91 Aligned_cols=39 Identities=18% Similarity=0.100 Sum_probs=32.1
Q ss_pred CCCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEec
Q 028600 29 GVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDA 69 (207)
Q Consensus 29 ~~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~ 69 (207)
.++++..++ +.-|.||||-+..++.-+.. .|++|+++..
T Consensus 17 ~~g~l~v~~-G~MgsGKTT~lL~~~~r~~~-~g~kvli~kp 55 (234)
T 2orv_A 17 TRGQIQVIL-GPMFSGKSTELMRRVRRFQI-AQYKCLVIKY 55 (234)
T ss_dssp -CCEEEEEE-CCTTSCHHHHHHHHHHHHHT-TTCCEEEEEE
T ss_pred CceEEEEEE-CCCCCcHHHHHHHHHHHHHH-CCCeEEEEee
Confidence 456766665 55579999999999999999 9999999974
No 382
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=92.29 E-value=0.13 Score=38.31 Aligned_cols=34 Identities=24% Similarity=0.384 Sum_probs=25.9
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~ 71 (207)
..+|+| ++..|+||||++..||..+ |.+ ++|.|.
T Consensus 14 ~~iI~i-~g~~gsGk~~i~~~la~~l----g~~--~~d~~~ 47 (223)
T 3hdt_A 14 NLIITI-EREYGSGGRIVGKKLAEEL----GIH--FYDDDI 47 (223)
T ss_dssp CEEEEE-EECTTSCHHHHHHHHHHHH----TCE--EECHHH
T ss_pred CeEEEE-eCCCCCCHHHHHHHHHHHc----CCc--EEcHHH
Confidence 457777 6889999999999999865 434 577664
No 383
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=92.23 E-value=0.25 Score=37.90 Aligned_cols=66 Identities=15% Similarity=0.067 Sum_probs=38.7
Q ss_pred CCCEEEEcCCCCCC-------cc------hhhhhhhhcCceEE-EeeCCch-hhHHHHHHHHHHhhhCCCCeeEEEEccc
Q 028600 139 NLDILVIDMPPGTG-------DA------QLTTTQTLQLSGAL-IVSTPQD-VALIDARKGITMFSKVQVPVCSFLAQII 203 (207)
Q Consensus 139 ~~D~IiiD~~~~~~-------~~------~~~~~~~~~~d~vi-~v~~~~~-~~~~~~~~~l~~l~~~~~~~~g~v~N~~ 203 (207)
.++++|+|||+... .. ......+..++.++ +|++... .........++.+...+.++ -+|+||.
T Consensus 124 ~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~~~~~~~~~~~-i~V~NK~ 202 (299)
T 2aka_B 124 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRT-IGVITKL 202 (299)
T ss_dssp CCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHCTTCSSE-EEEEECG
T ss_pred CCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHHHHHhCCCCCeE-EEEEEcc
Confidence 48999999996321 10 12223344566665 4665543 22233345666666666666 5899998
Q ss_pred cC
Q 028600 204 SS 205 (207)
Q Consensus 204 ~~ 205 (207)
|.
T Consensus 203 Dl 204 (299)
T 2aka_B 203 DL 204 (299)
T ss_dssp GG
T ss_pred cc
Confidence 73
No 384
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=92.23 E-value=0.11 Score=37.21 Aligned_cols=23 Identities=48% Similarity=0.691 Sum_probs=18.9
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHH
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAV 54 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~ 54 (207)
+++|++ .+..|+||||++..|+.
T Consensus 2 g~ii~l-~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 2 KKLYII-TGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEE-ECSTTSSHHHHHHHHHH
T ss_pred CeEEEE-ECCCCCcHHHHHHHHhc
Confidence 456666 57889999999999975
No 385
>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}
Probab=92.20 E-value=0.14 Score=38.44 Aligned_cols=41 Identities=17% Similarity=0.127 Sum_probs=31.7
Q ss_pred cCCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCC
Q 028600 27 IDGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (207)
Q Consensus 27 ~~~~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~ 73 (207)
...++|++.|+++.+|.|+ .+|..|++ .|.+|++++-+...
T Consensus 18 ~~~m~k~vlITGas~gIG~-----~la~~l~~-~G~~V~~~~r~~~~ 58 (251)
T 3orf_A 18 GSHMSKNILVLGGSGALGA-----EVVKFFKS-KSWNTISIDFRENP 58 (251)
T ss_dssp ----CCEEEEETTTSHHHH-----HHHHHHHH-TTCEEEEEESSCCT
T ss_pred ccccCCEEEEECCCCHHHH-----HHHHHHHH-CCCEEEEEeCCccc
Confidence 3455789999999988775 78888999 99999999877643
No 386
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=92.18 E-value=0.35 Score=33.88 Aligned_cols=67 Identities=13% Similarity=0.080 Sum_probs=41.3
Q ss_pred CCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCchh-hHHHHHHHHHHhh----hCCCCeeEEEEccccC
Q 028600 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDV-ALIDARKGITMFS----KVQVPVCSFLAQIISS 205 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~~-~~~~~~~~l~~l~----~~~~~~~g~v~N~~~~ 205 (207)
..+.+.|+|+|+.-.........+..+|.+++|.+.... +...+...+..+. ..+.++ -+|.|+.|-
T Consensus 64 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~-ilv~nK~Dl 135 (183)
T 3kkq_A 64 QWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPM-ILVANKVDL 135 (183)
T ss_dssp EEEEEEEEECCSCGGGCSSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCE-EEEEECTTC
T ss_pred cEEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcE-EEEEECCCc
Confidence 345567799996432222334445579999999887653 4555555544443 345565 588999883
No 387
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=92.13 E-value=0.1 Score=38.43 Aligned_cols=25 Identities=24% Similarity=0.315 Sum_probs=20.3
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHH
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVAL 56 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~l 56 (207)
+..|.+. +..|+||||++..||..+
T Consensus 5 ~~~I~l~-G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 5 KHNLILI-GAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CCEEEEE-ECTTSSHHHHHHHHHHHH
T ss_pred ceEEEEE-CCCCCCHHHHHHHHHHHh
Confidence 4567775 777999999999999866
No 388
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=92.09 E-value=0.13 Score=38.84 Aligned_cols=27 Identities=41% Similarity=0.571 Sum_probs=21.6
Q ss_pred CCCeEEEEEeCCCCCcHHHHHHHHHHHH
Q 028600 29 GVKDVIAVASGKGGVGKSTTAVNLAVAL 56 (207)
Q Consensus 29 ~~~k~I~v~s~kgG~GkTt~a~~LA~~l 56 (207)
..+.+|+++ +..|+||||++..||..|
T Consensus 25 ~~g~~I~I~-G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 25 AIAPVITVD-GPSGAGKGTLCKALAESL 51 (252)
T ss_dssp TTSCEEEEE-CCTTSSHHHHHHHHHHHT
T ss_pred CCCcEEEEE-CCCCCCHHHHHHHHHHhc
Confidence 336789885 788999999999998643
No 389
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=92.04 E-value=0.26 Score=39.65 Aligned_cols=38 Identities=24% Similarity=0.315 Sum_probs=30.5
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHhC-CCeEEEEec
Q 028600 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKC-QLKVGLLDA 69 (207)
Q Consensus 30 ~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~-g~~VlliD~ 69 (207)
.+.+++|+ +..|+||||+...|+..+.. . ..++++++-
T Consensus 135 ~g~~i~iv-G~~GsGKTTll~~l~~~~~~-~~~g~I~~~e~ 173 (372)
T 2ewv_A 135 KMGLILVT-GPTGSGKSTTIASMIDYINQ-TKSYHIITIED 173 (372)
T ss_dssp SSEEEEEE-CSSSSSHHHHHHHHHHHHHH-HSCCEEEEEES
T ss_pred CCCEEEEE-CCCCCCHHHHHHHHHhhcCc-CCCcEEEEecc
Confidence 36678875 77799999999999999987 4 567777763
No 390
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=92.04 E-value=0.46 Score=33.47 Aligned_cols=67 Identities=13% Similarity=0.043 Sum_probs=42.3
Q ss_pred CCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCch-hhHHHHHHHHHHhhh----CCCCeeEEEEccccC
Q 028600 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDARKGITMFSK----VQVPVCSFLAQIISS 205 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~-~~~~~~~~~l~~l~~----~~~~~~g~v~N~~~~ 205 (207)
..+.+.++|+|+.-............+|.+++|.+... .+...+...+..+.+ .+.++ -+|.|+.|-
T Consensus 58 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~pi-ilv~NK~Dl 129 (181)
T 1fzq_A 58 QGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPV-LIFANKQDL 129 (181)
T ss_dssp TTEEEEEEECSSCGGGHHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCE-EEEEECTTS
T ss_pred CCEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCE-EEEEECcCc
Confidence 35678899999642221222334457999999988754 456666655554422 34555 589999884
No 391
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=91.99 E-value=0.15 Score=36.86 Aligned_cols=25 Identities=28% Similarity=0.359 Sum_probs=20.6
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHH
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVAL 56 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~l 56 (207)
+++|+++ +..|+||||++..|+..+
T Consensus 6 g~~i~l~-G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLS-GPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEE-CSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEE-CCCCCCHHHHHHHHHHhh
Confidence 6678885 778999999999887755
No 392
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=91.94 E-value=0.49 Score=33.15 Aligned_cols=66 Identities=11% Similarity=0.064 Sum_probs=41.0
Q ss_pred CCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCch-hhHHHHHHHHHHhhh----CCCCeeEEEEccccC
Q 028600 139 NLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDARKGITMFSK----VQVPVCSFLAQIISS 205 (207)
Q Consensus 139 ~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~-~~~~~~~~~l~~l~~----~~~~~~g~v~N~~~~ 205 (207)
.+.+.|+|+|+.-.........+..+|.+++|.+... .+...+...+..+.+ .+.++ -+|+|+.|-
T Consensus 51 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~-i~v~nK~Dl 121 (189)
T 4dsu_A 51 TCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPM-VLVGNKCDL 121 (189)
T ss_dssp EEEEEEEECCCC---CTTHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCE-EEEEECTTS
T ss_pred EEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcE-EEEEECccC
Confidence 4567889999743322333444557899888887664 345555555555543 34555 588999883
No 393
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=91.93 E-value=0.28 Score=34.76 Aligned_cols=66 Identities=8% Similarity=0.048 Sum_probs=41.2
Q ss_pred CCCEEEEcCCCCCCcc-hhhhhhhhcCceEEEeeCCch-hhHHHHHHHHHHhhh----CCCCeeEEEEccccC
Q 028600 139 NLDILVIDMPPGTGDA-QLTTTQTLQLSGALIVSTPQD-VALIDARKGITMFSK----VQVPVCSFLAQIISS 205 (207)
Q Consensus 139 ~~D~IiiD~~~~~~~~-~~~~~~~~~~d~vi~v~~~~~-~~~~~~~~~l~~l~~----~~~~~~g~v~N~~~~ 205 (207)
.+.+.|+|+|+.-... ......+..+|.+++|.+... .+...+...++.+.+ .+.++ -+|+||.|.
T Consensus 68 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~pi-ilv~nK~Dl 139 (189)
T 1z06_A 68 RIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPR-ILVGNKCDL 139 (189)
T ss_dssp EEEEEEEECCCSHHHHTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCE-EEEEECTTC
T ss_pred EEEEEEEECCCchhhhhhhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCE-EEEEECccc
Confidence 4678999999632211 222334557999999998754 345555555544432 34555 589999884
No 394
>3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A*
Probab=91.90 E-value=0.14 Score=38.70 Aligned_cols=35 Identities=26% Similarity=0.435 Sum_probs=30.3
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~ 71 (207)
-|++.|+++.+|.|+ .+|..|++ .|.+|++.|.+.
T Consensus 2 nK~vlVTGas~GIG~-----aia~~la~-~Ga~V~~~~~~~ 36 (247)
T 3ged_A 2 NRGVIVTGGGHGIGK-----QICLDFLE-AGDKVCFIDIDE 36 (247)
T ss_dssp CCEEEEESTTSHHHH-----HHHHHHHH-TTCEEEEEESCH
T ss_pred CCEEEEecCCCHHHH-----HHHHHHHH-CCCEEEEEeCCH
Confidence 478999999999887 56888999 999999998763
No 395
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=91.89 E-value=0.15 Score=36.85 Aligned_cols=25 Identities=24% Similarity=0.442 Sum_probs=20.7
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHH
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVAL 56 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~l 56 (207)
+.+|+++ +..|+||||++..|+..+
T Consensus 7 g~ii~l~-Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 7 ANLFIIS-APSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCEEEEE-CCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEE-CcCCCCHHHHHHHHHhhC
Confidence 6788885 778999999999988753
No 396
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=91.88 E-value=0.18 Score=42.81 Aligned_cols=41 Identities=17% Similarity=0.131 Sum_probs=28.8
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHH---HHhCCCeEEEEecCC
Q 028600 30 VKDVIAVASGKGGVGKSTTAVNLAVAL---ASKCQLKVGLLDADV 71 (207)
Q Consensus 30 ~~k~I~v~s~kgG~GkTt~a~~LA~~l---a~~~g~~VlliD~d~ 71 (207)
..++++| .+.||+||||++..++... ...-...|..++++.
T Consensus 146 ~~~~v~I-~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~ 189 (591)
T 1z6t_A 146 EPGWVTI-HGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGK 189 (591)
T ss_dssp SCEEEEE-ECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEES
T ss_pred CCceEEE-EcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCC
Confidence 3567776 6999999999999998643 221223577777654
No 397
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=91.85 E-value=0.19 Score=36.82 Aligned_cols=27 Identities=30% Similarity=0.299 Sum_probs=21.5
Q ss_pred CCCeEEEEEeCCCCCcHHHHHHHHHHHH
Q 028600 29 GVKDVIAVASGKGGVGKSTTAVNLAVAL 56 (207)
Q Consensus 29 ~~~k~I~v~s~kgG~GkTt~a~~LA~~l 56 (207)
..+++|+| ++|.|+||+|+|-.+...+
T Consensus 9 ~~~~II~i-tGk~~SGKd~va~~l~~~~ 35 (202)
T 3ch4_B 9 APRLVLLF-SGKRKSGKDFVTEALQSRL 35 (202)
T ss_dssp CCSEEEEE-EECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEE-ECCCCCChHHHHHHHHHHc
Confidence 34677777 5999999999998886644
No 398
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=91.82 E-value=0.18 Score=36.81 Aligned_cols=66 Identities=14% Similarity=0.131 Sum_probs=42.8
Q ss_pred CCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCchh-hHHHHHHHHHHhhhC--CCCeeEEEEcccc
Q 028600 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDV-ALIDARKGITMFSKV--QVPVCSFLAQIIS 204 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~~-~~~~~~~~l~~l~~~--~~~~~g~v~N~~~ 204 (207)
..+.+.|+|+|+.-.........+..+|.+++|.+.... +...+...+..+.+. +.++ -+|.|+.|
T Consensus 62 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~p~-ilv~nK~D 130 (221)
T 3gj0_A 62 GPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPI-VLCGNKVD 130 (221)
T ss_dssp EEEEEEEEEECSGGGTSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSTTCCE-EEEEECTT
T ss_pred EEEEEEEEeCCChHHHhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCE-EEEEECCc
Confidence 457889999996322112233445579999999887653 555555555555543 4555 58999987
No 399
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=91.81 E-value=0.16 Score=38.14 Aligned_cols=34 Identities=41% Similarity=0.549 Sum_probs=25.3
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~ 71 (207)
+.+|++ .+..|+||||++..||..+.- .++|.|.
T Consensus 9 ~~~i~i-~G~~GsGKsTla~~la~~lg~------~~~d~g~ 42 (233)
T 3r20_A 9 SLVVAV-DGPAGTGKSSVSRGLARALGA------RYLDTGA 42 (233)
T ss_dssp CCEEEE-ECCTTSSHHHHHHHHHHHHTC------EEEEHHH
T ss_pred CeEEEE-ECCCCCCHHHHHHHHHHHhCC------CcccCCc
Confidence 456777 588899999999999876632 5677664
No 400
>3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4}
Probab=91.78 E-value=0.2 Score=42.19 Aligned_cols=32 Identities=41% Similarity=0.512 Sum_probs=28.2
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEE
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGL 66 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~Vll 66 (207)
.++|+|+++. ||||++..++..|.. .|+++.+
T Consensus 122 ~~vIaVTGTn---GKTTTt~li~~iL~~-~G~~~~~ 153 (524)
T 3hn7_A 122 RHVIAVAGTH---GKTTTTTMLAWILHY-AGIDAGF 153 (524)
T ss_dssp SEEEEEECSS---CHHHHHHHHHHHHHH-TTCCCEE
T ss_pred CcEEEEECCC---CHHHHHHHHHHHHHH-cCCCceE
Confidence 6899998665 999999999999999 9988754
No 401
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=91.62 E-value=0.53 Score=33.35 Aligned_cols=65 Identities=9% Similarity=0.088 Sum_probs=42.1
Q ss_pred CCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCc-hhhHHHHHHHHHHhhh------CCCCeeEEEEcccc
Q 028600 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQ-DVALIDARKGITMFSK------VQVPVCSFLAQIIS 204 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~-~~~~~~~~~~l~~l~~------~~~~~~g~v~N~~~ 204 (207)
..+.+.|+|+++.-....+ ...+..+|.+++|.+.+ ..+...+...+..+.+ .+.++ -+|.|+.|
T Consensus 67 ~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~pi-ilv~nK~D 138 (187)
T 3c5c_A 67 QPVHLRVMDTADLDTPRNC-ERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPA-LLLGNKLD 138 (187)
T ss_dssp EEEEEEEEECCC---CCCT-HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCE-EEEEECGG
T ss_pred EEEEEEEEECCCCCcchhH-HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCE-EEEEECcc
Confidence 4567889999964222223 23455789998888776 4467777666666654 35665 58999987
No 402
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=91.57 E-value=0.32 Score=33.48 Aligned_cols=66 Identities=14% Similarity=0.130 Sum_probs=39.8
Q ss_pred CCCCEEEEcCCCCCCcch-hhhhhhhcCceEEEeeCCch-hhHHHHHHHHHHhhhC----CCCeeEEEEcccc
Q 028600 138 GNLDILVIDMPPGTGDAQ-LTTTQTLQLSGALIVSTPQD-VALIDARKGITMFSKV----QVPVCSFLAQIIS 204 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~-~~~~~~~~~d~vi~v~~~~~-~~~~~~~~~l~~l~~~----~~~~~g~v~N~~~ 204 (207)
..+.+.++|+++.-.... ........+|.+++|.+.+. .+...+...+..+.+. +.++ -+|.|+.|
T Consensus 49 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~-ilv~nK~D 120 (169)
T 3q85_A 49 EEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPV-ILVGNKSD 120 (169)
T ss_dssp EEEEEEEECCCCC--------CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCE-EEEEECTT
T ss_pred eEEEEEEEECCCccccchhhhhhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCE-EEEeeCcc
Confidence 457788999996432111 22222446899888887754 3556666666555543 5565 58899988
No 403
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=91.56 E-value=0.16 Score=41.39 Aligned_cols=40 Identities=23% Similarity=0.169 Sum_probs=30.9
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHh-----CCCeEEEEecCC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASK-----CQLKVGLLDADV 71 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~-----~g~~VlliD~d~ 71 (207)
+.++.| .+..|+||||++.+|+...... .+.+|++||...
T Consensus 178 Gei~~I-~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~ 222 (400)
T 3lda_A 178 GSITEL-FGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG 222 (400)
T ss_dssp TSEEEE-EESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CcEEEE-EcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCC
Confidence 567777 5889999999999998765431 257899999875
No 404
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=91.54 E-value=0.21 Score=36.37 Aligned_cols=66 Identities=9% Similarity=0.019 Sum_probs=35.1
Q ss_pred CCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCch-hhHHHHH-HHHHHhhhC--CCCeeEEEEcccc
Q 028600 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDAR-KGITMFSKV--QVPVCSFLAQIIS 204 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~-~~~~~~~-~~l~~l~~~--~~~~~g~v~N~~~ 204 (207)
..+.+.|+|+|+.-.........+..+|.+++|.+... .+...+. ..++.+.+. +.++ -+|.|+.|
T Consensus 80 ~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi-ilv~nK~D 149 (214)
T 2j1l_A 80 KPVHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPI-IVVGCKTD 149 (214)
T ss_dssp EEEEEEEEEC---------------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCE-EEEEECGG
T ss_pred EEEEEEEEECCCchhhhHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCE-EEEEEChh
Confidence 34678899999642221222333447899999988753 4555554 445555543 4555 58899987
No 405
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=91.52 E-value=0.51 Score=32.31 Aligned_cols=66 Identities=14% Similarity=0.122 Sum_probs=36.5
Q ss_pred CCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCc-hhhHHHHHHHHHHhhhC----CCCeeEEEEcccc
Q 028600 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQ-DVALIDARKGITMFSKV----QVPVCSFLAQIIS 204 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~-~~~~~~~~~~l~~l~~~----~~~~~g~v~N~~~ 204 (207)
..+.+.++|+++...........+..+|.+++|.+.+ +.+...+...+..+.+. +.++ -+|.|+.|
T Consensus 47 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~-ilv~nK~D 117 (166)
T 3q72_A 47 EEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPI-ILVGNKSD 117 (166)
T ss_dssp EEEEEEEEECC---------------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCE-EEEEECTT
T ss_pred EEEEEEEEECCCCccchhhhhhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCE-EEEEeccc
Confidence 4567889999964332222233345788888887664 44566676666666543 4555 58899988
No 406
>2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A*
Probab=91.44 E-value=0.27 Score=40.39 Aligned_cols=33 Identities=21% Similarity=0.341 Sum_probs=29.2
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEE
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLL 67 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~Vlli 67 (207)
.++|+|+++. ||||++..++..|.. .|++|.+.
T Consensus 104 ~~vI~VTGTn---GKTTT~~ml~~iL~~-~g~~~~~~ 136 (439)
T 2x5o_A 104 APIVAITGSN---GKSTVTTLVGEMAKA-AGVNVGVG 136 (439)
T ss_dssp SCEEEEECSS---SHHHHHHHHHHHHHH-TTCCEEEE
T ss_pred CCEEEEECCC---CHHHHHHHHHHHHHh-cCCCEEEe
Confidence 6799998665 999999999999999 99998765
No 407
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=91.41 E-value=0.33 Score=38.20 Aligned_cols=67 Identities=15% Similarity=0.095 Sum_probs=40.7
Q ss_pred CCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCch-hhHHHHHHHHHHhh-hC---CCCeeEEEEccccC
Q 028600 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDARKGITMFS-KV---QVPVCSFLAQIISS 205 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~-~~~~~~~~~l~~l~-~~---~~~~~g~v~N~~~~ 205 (207)
..+.+.|+|+|+.-.........+..+|.+|+|++... .++..+...+..+. .. +.++ -+|.||.|-
T Consensus 207 ~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~pi-ilV~NK~Dl 278 (329)
T 3o47_A 207 KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVL-LVFANKQDL 278 (329)
T ss_dssp TTEEEEEEECC-----CCSHHHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEE-EEEEECTTS
T ss_pred CcEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeE-EEEEECccC
Confidence 45788999999743322333444557899999988753 45656555544433 22 4454 688999983
No 408
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=91.40 E-value=0.25 Score=42.48 Aligned_cols=34 Identities=38% Similarity=0.487 Sum_probs=26.8
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHh---CCCeEEEE
Q 028600 34 IAVASGKGGVGKSTTAVNLAVALASK---CQLKVGLL 67 (207)
Q Consensus 34 I~v~s~kgG~GkTt~a~~LA~~la~~---~g~~Vlli 67 (207)
+.+..+.+|+||||++..+...+.+. .|.+|+++
T Consensus 166 ~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~ 202 (608)
T 1w36_D 166 ISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLA 202 (608)
T ss_dssp EEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEE
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEE
Confidence 45557889999999999999888841 46688776
No 409
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=91.29 E-value=0.24 Score=35.25 Aligned_cols=66 Identities=6% Similarity=-0.016 Sum_probs=40.7
Q ss_pred CCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCchh-hHHHH-HHHHHHhhhC--CCCeeEEEEcccc
Q 028600 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDV-ALIDA-RKGITMFSKV--QVPVCSFLAQIIS 204 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~~-~~~~~-~~~l~~l~~~--~~~~~g~v~N~~~ 204 (207)
..+.+.|+|+|+.-.........+..+|.+++|.+.... +...+ ...+..+++. +.++ -+|.|+.|
T Consensus 69 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~-ilv~nK~D 138 (194)
T 3reg_A 69 EEFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKT-VLVGLKVD 138 (194)
T ss_dssp EEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEE-EEEEECGG
T ss_pred EEEEEEEEECCCcHHHHHHhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCE-EEEEEChh
Confidence 456779999996422222333445578999999886643 44554 4445555533 3444 58889988
No 410
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=91.20 E-value=0.3 Score=35.37 Aligned_cols=67 Identities=7% Similarity=-0.030 Sum_probs=41.0
Q ss_pred CCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCch-hhHHHH-HHHHHHhhhC--CCCeeEEEEccccC
Q 028600 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDA-RKGITMFSKV--QVPVCSFLAQIISS 205 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~-~~~~~~-~~~l~~l~~~--~~~~~g~v~N~~~~ 205 (207)
..+.+.|+|+++.-.........+..+|.+++|.+... .+...+ ...+..+.+. +.+ +-+|.|+.|-
T Consensus 74 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~p-iilv~nK~Dl 144 (205)
T 1gwn_A 74 QRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTK-MLLVGCKSDL 144 (205)
T ss_dssp SEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCE-EEEEEECGGG
T ss_pred EEEEEEEEeCCCcHhhhHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCC-EEEEEechhh
Confidence 45678999999642211222333457899999988764 355555 3445555542 344 4588899873
No 411
>1j6u_A UDP-N-acetylmuramate-alanine ligase MURC; structural genomics, TM0231, JCSG, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: c.5.1.1 c.59.1.1 c.72.2.1
Probab=91.19 E-value=0.24 Score=41.07 Aligned_cols=32 Identities=28% Similarity=0.300 Sum_probs=27.9
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEE
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGL 66 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~Vll 66 (207)
.++|+|+++. ||||++.-++..|.. .|++|.+
T Consensus 114 ~~vI~VTGTn---GKTTTt~ml~~iL~~-~G~~~~~ 145 (469)
T 1j6u_A 114 KEEFAVTGTD---GKTTTTAMVAHVLKH-LRKSPTV 145 (469)
T ss_dssp CCEEEEECSS---SHHHHHHHHHHHHHH-TTCCCEE
T ss_pred CCEEEEECCC---CHHHHHHHHHHHHHH-cCCCceE
Confidence 5799998665 999999999999999 9988743
No 412
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=91.16 E-value=0.39 Score=33.70 Aligned_cols=66 Identities=11% Similarity=0.003 Sum_probs=41.4
Q ss_pred CCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCch-hhHHHHHHHHHHhhh---CCCCeeEEEEccccC
Q 028600 139 NLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDARKGITMFSK---VQVPVCSFLAQIISS 205 (207)
Q Consensus 139 ~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~-~~~~~~~~~l~~l~~---~~~~~~g~v~N~~~~ 205 (207)
.+.+.|+|+|+.-.........+..+|.+++|.+... .+...+...+..+.. .+.++ -+|.|+.|-
T Consensus 58 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi-ilv~nK~Dl 127 (186)
T 2bme_A 58 YVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNIVI-ILCGNKKDL 127 (186)
T ss_dssp EEEEEEEEECCSGGGHHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEE-EEEEECGGG
T ss_pred EEEEEEEeCCCcHHHHHHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcE-EEEEECccc
Confidence 3678999999643222223344557899999988764 355555555555443 34444 688999873
No 413
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=91.14 E-value=0.14 Score=38.32 Aligned_cols=26 Identities=27% Similarity=0.289 Sum_probs=21.4
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHH
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALA 57 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la 57 (207)
++.|++. +-.|+||||++..|+..+.
T Consensus 2 ~~~i~~~-G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIE-GNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEE-ECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEE-cCCCCCHHHHHHHHHHHcC
Confidence 5778885 6689999999999988763
No 414
>3vtz_A Glucose 1-dehydrogenase; rossmann fold, oxidoreductase, NAD binding; 2.30A {Thermoplasma volcanium}
Probab=91.11 E-value=0.2 Score=38.17 Aligned_cols=41 Identities=24% Similarity=0.238 Sum_probs=32.8
Q ss_pred cCCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCC
Q 028600 27 IDGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (207)
Q Consensus 27 ~~~~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~ 73 (207)
....+|++.|+++.+|.|+ .+|..|++ .|.+|+++|.+...
T Consensus 10 ~~~~~k~vlVTGas~GIG~-----aia~~l~~-~G~~V~~~~r~~~~ 50 (269)
T 3vtz_A 10 EEFTDKVAIVTGGSSGIGL-----AVVDALVR-YGAKVVSVSLDEKS 50 (269)
T ss_dssp CTTTTCEEEESSTTSHHHH-----HHHHHHHH-TTCEEEEEESCC--
T ss_pred cCCCCCEEEEeCCCCHHHH-----HHHHHHHH-CCCEEEEEeCCchh
Confidence 3455899999999998886 67888999 99999999877543
No 415
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=91.08 E-value=0.22 Score=36.55 Aligned_cols=23 Identities=35% Similarity=0.432 Sum_probs=18.3
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHH
Q 028600 34 IAVASGKGGVGKSTTAVNLAVALA 57 (207)
Q Consensus 34 I~v~s~kgG~GkTt~a~~LA~~la 57 (207)
|.+. +.+|+||+|.|..||..+.
T Consensus 3 Iil~-GpPGsGKgTqa~~La~~~g 25 (206)
T 3sr0_A 3 LVFL-GPPGAGKGTQAKRLAKEKG 25 (206)
T ss_dssp EEEE-CSTTSSHHHHHHHHHHHHC
T ss_pred EEEE-CCCCCCHHHHHHHHHHHHC
Confidence 4443 7899999999999998653
No 416
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=91.00 E-value=0.58 Score=35.54 Aligned_cols=64 Identities=6% Similarity=0.007 Sum_probs=40.7
Q ss_pred CCCCEEEEcCCCCCCcch------hhhhh--hhcCceEEEeeCCchhhHHHHHHHHHHhhhCC-CCeeEEEEcccc
Q 028600 138 GNLDILVIDMPPGTGDAQ------LTTTQ--TLQLSGALIVSTPQDVALIDARKGITMFSKVQ-VPVCSFLAQIIS 204 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~------~~~~~--~~~~d~vi~v~~~~~~~~~~~~~~l~~l~~~~-~~~~g~v~N~~~ 204 (207)
.++.+.|+|+|+..+... ..... ...+|.+++|+++... ........++.+.+ .++ -+++|+.|
T Consensus 48 ~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~--~~~~~~~~~~~~~~~~p~-ilv~NK~D 120 (271)
T 3k53_A 48 REKEFLVVDLPGIYSLTAHSIDELIARNFILDGNADVIVDIVDSTCL--MRNLFLTLELFEMEVKNI-ILVLNKFD 120 (271)
T ss_dssp TTEEEEEEECCCCSCCCSSCHHHHHHHHHHHTTCCSEEEEEEEGGGH--HHHHHHHHHHHHTTCCSE-EEEEECHH
T ss_pred CCceEEEEeCCCccccccCCHHHHHHHHhhhccCCcEEEEEecCCcc--hhhHHHHHHHHhcCCCCE-EEEEEChh
Confidence 456689999997433211 11111 1358999999988763 34445555556666 676 58999987
No 417
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=90.95 E-value=0.3 Score=35.46 Aligned_cols=65 Identities=17% Similarity=0.170 Sum_probs=40.9
Q ss_pred CCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCchh-hHHHHHHHHHHhhh---CCCCeeEEEEccccC
Q 028600 140 LDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQDV-ALIDARKGITMFSK---VQVPVCSFLAQIISS 205 (207)
Q Consensus 140 ~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~~-~~~~~~~~l~~l~~---~~~~~~g~v~N~~~~ 205 (207)
+.+.|+|+|+.-.........+..+|.+++|.+.... +...+...+..+.. .+.++ -+|+|+.|-
T Consensus 61 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi-ilv~nK~Dl 129 (218)
T 4djt_A 61 IKFNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPI-VVCANKIDI 129 (218)
T ss_dssp EEEEEEEECSGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCE-EEEEECTTC
T ss_pred EEEEEEecCCchhhchHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCE-EEEEECCCC
Confidence 6799999996322112223345579999999887643 44555555455443 34565 589999883
No 418
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=90.93 E-value=0.23 Score=35.76 Aligned_cols=66 Identities=12% Similarity=0.017 Sum_probs=41.6
Q ss_pred CCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCch-hhHHHHHHHHHHhhh---CCCCeeEEEEccccC
Q 028600 139 NLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDARKGITMFSK---VQVPVCSFLAQIISS 205 (207)
Q Consensus 139 ~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~-~~~~~~~~~l~~l~~---~~~~~~g~v~N~~~~ 205 (207)
.+.+.|+|+|+.-.........+..+|.+|+|.+... .+...+...+..+.. .+.++ -+|.|+.|-
T Consensus 73 ~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi-ilv~nK~Dl 142 (200)
T 2o52_A 73 TVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNIVV-ILCGNKKDL 142 (200)
T ss_dssp EEEEEEECCTTHHHHSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEE-EEEEECGGG
T ss_pred eeEEEEEcCCCcHhHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcE-EEEEECCCc
Confidence 4688999999631111222344557999999988654 455656666655543 24444 688999873
No 419
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=90.90 E-value=0.75 Score=31.76 Aligned_cols=63 Identities=6% Similarity=-0.034 Sum_probs=38.6
Q ss_pred CCCEEEEcCCCCCCcc------hhhhhhh--hcCceEEEeeCCchhhHHHHHHHHHHhhhCCCCeeEEEEcccc
Q 028600 139 NLDILVIDMPPGTGDA------QLTTTQT--LQLSGALIVSTPQDVALIDARKGITMFSKVQVPVCSFLAQIIS 204 (207)
Q Consensus 139 ~~D~IiiD~~~~~~~~------~~~~~~~--~~~d~vi~v~~~~~~~~~~~~~~l~~l~~~~~~~~g~v~N~~~ 204 (207)
.+.+.++|+|+..... ....... ..+|.+++|.+... .......+..+.+.+.++ -+|.|+.|
T Consensus 49 ~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~--~~~~~~~~~~~~~~~~p~-ilv~nK~D 119 (165)
T 2wji_A 49 GEKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATA--LERNLYLTLQLMEMGANL-LLALNKMD 119 (165)
T ss_dssp TEEEEEEECCCCSCSSSSSHHHHHHHHHHHHHCCSEEEEEEETTC--HHHHHHHHHHHHHTTCCE-EEEEECHH
T ss_pred CcEEEEEECCCcccCCCcchhHHHHHHHHhcCCCCEEEEEecCCc--hhHhHHHHHHHHhcCCCE-EEEEEchH
Confidence 4568899998643211 1111111 26899999998764 334445556666667776 58889876
No 420
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=90.73 E-value=0.22 Score=36.29 Aligned_cols=22 Identities=32% Similarity=0.421 Sum_probs=18.2
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHH
Q 028600 34 IAVASGKGGVGKSTTAVNLAVAL 56 (207)
Q Consensus 34 I~v~s~kgG~GkTt~a~~LA~~l 56 (207)
|.+ .+..|+||||++..||..+
T Consensus 3 I~l-~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 3 IVL-MGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEE-ECSTTSSHHHHHHHHHHHH
T ss_pred EEE-ECCCCCCHHHHHHHHHHHh
Confidence 555 5889999999999998755
No 421
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=90.69 E-value=0.36 Score=37.04 Aligned_cols=36 Identities=28% Similarity=0.246 Sum_probs=27.9
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~ 71 (207)
++-+.+ .+.+|+|||+++..+|..+ +.++..+++..
T Consensus 50 ~~~vll-~G~~GtGKT~la~~la~~l----~~~~~~i~~~~ 85 (310)
T 1ofh_A 50 PKNILM-IGPTGVGKTEIARRLAKLA----NAPFIKVEATK 85 (310)
T ss_dssp CCCEEE-ECCTTSSHHHHHHHHHHHH----TCCEEEEEGGG
T ss_pred CceEEE-ECCCCCCHHHHHHHHHHHh----CCCEEEEcchh
Confidence 344555 4889999999999998866 55788888764
No 422
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=90.65 E-value=1 Score=39.55 Aligned_cols=46 Identities=26% Similarity=0.389 Sum_probs=32.6
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCCC--Ccccccccc
Q 028600 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYGP--SVPMMMKID 83 (207)
Q Consensus 33 ~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~~--~l~~~~~~~ 83 (207)
.+.+ .+.+|+|||++|..+|..+ |.++..+|+..... ..+.++|..
T Consensus 490 ~~ll-~G~~GtGKT~la~~la~~l----~~~~~~i~~s~~~~~~~~~~l~g~~ 537 (758)
T 1r6b_X 490 SFLF-AGPTGVGKTEVTVQLSKAL----GIELLRFDMSEYMERHTVSRLIGAP 537 (758)
T ss_dssp EEEE-ECSTTSSHHHHHHHHHHHH----TCEEEEEEGGGCSSSSCCSSSCCCC
T ss_pred EEEE-ECCCCCcHHHHHHHHHHHh----cCCEEEEechhhcchhhHhhhcCCC
Confidence 4555 5889999999999999876 56888898865432 344455543
No 423
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=90.60 E-value=0.31 Score=41.93 Aligned_cols=34 Identities=24% Similarity=0.328 Sum_probs=27.5
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEE
Q 028600 34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLL 67 (207)
Q Consensus 34 I~v~s~kgG~GkTt~a~~LA~~la~~~g~~Vlli 67 (207)
+.+..+-+|+|||++...+...+.+..+.+|++.
T Consensus 197 ~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~ 230 (624)
T 2gk6_A 197 LSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVC 230 (624)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEE
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEE
Confidence 4555788999999999999988876357788776
No 424
>1p3d_A UDP-N-acetylmuramate--alanine ligase; alpha/beta protein; HET: UMA ANP; 1.70A {Haemophilus influenzae} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 PDB: 1gqq_A* 1p31_A* 1gqy_A*
Probab=90.56 E-value=0.4 Score=39.78 Aligned_cols=36 Identities=25% Similarity=0.269 Sum_probs=28.9
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCe-EEEEecC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLK-VGLLDAD 70 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~-VlliD~d 70 (207)
.++|+|+++. ||||++.-++..|.. .|++ ++.+.-.
T Consensus 118 ~~vI~VTGTn---GKTTTt~ml~~iL~~-~G~~p~~~igg~ 154 (475)
T 1p3d_A 118 RHGIAVAGTH---GKTTTTAMISMIYTQ-AKLDPTFVNGGL 154 (475)
T ss_dssp SEEEEEESSS---CHHHHHHHHHHHHHH-TTCCCEEEEEEE
T ss_pred CCEEEEECCC---CHHHHHHHHHHHHHh-CCCCCEEEECCc
Confidence 4789998665 999999999999999 8986 5544433
No 425
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=90.56 E-value=0.46 Score=34.33 Aligned_cols=66 Identities=11% Similarity=0.043 Sum_probs=38.0
Q ss_pred CCCEEEEcCCCCCCcch-hhhhhhhcCceEEEeeCCchh--hHHHHHHHHHH-hh-----hCCCCeeEEEEccccC
Q 028600 139 NLDILVIDMPPGTGDAQ-LTTTQTLQLSGALIVSTPQDV--ALIDARKGITM-FS-----KVQVPVCSFLAQIISS 205 (207)
Q Consensus 139 ~~D~IiiD~~~~~~~~~-~~~~~~~~~d~vi~v~~~~~~--~~~~~~~~l~~-l~-----~~~~~~~g~v~N~~~~ 205 (207)
.+.+.|+|+|+...... ........+|.+++|.+.... +.....+.+.. +. ..+.++ -+|.||.|-
T Consensus 53 ~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pi-ilv~nK~Dl 127 (214)
T 2fh5_B 53 GNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSL-LIACNKQDI 127 (214)
T ss_dssp CCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEE-EEEEECTTS
T ss_pred ccEEEEEECCCChhHHHHHHHHHHhhCCEEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccCCCE-EEEEECCCC
Confidence 67899999996422111 112224578999999988652 23333333222 21 224454 689999883
No 426
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=90.55 E-value=0.38 Score=37.82 Aligned_cols=40 Identities=10% Similarity=0.036 Sum_probs=29.9
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhC------CCeEEEEecCC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKC------QLKVGLLDADV 71 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~------g~~VlliD~d~ 71 (207)
++-+.+ ++.+|+|||+++..++..+.+.. +.+++.|++-.
T Consensus 45 ~~~lli-~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~ 90 (318)
T 3te6_A 45 NKLFYI-TNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALE 90 (318)
T ss_dssp CCEEEE-ECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTC
T ss_pred CCeEEE-ECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccc
Confidence 555655 79999999999999999997622 34566777544
No 427
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=90.47 E-value=0.8 Score=32.72 Aligned_cols=67 Identities=12% Similarity=0.093 Sum_probs=41.4
Q ss_pred CCCCEEEEcCCCCCCcch-hhhhhhhcCceEEEeeCCc-hhhHHHHHHHHHHhhh----CCCCeeEEEEccccC
Q 028600 138 GNLDILVIDMPPGTGDAQ-LTTTQTLQLSGALIVSTPQ-DVALIDARKGITMFSK----VQVPVCSFLAQIISS 205 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~-~~~~~~~~~d~vi~v~~~~-~~~~~~~~~~l~~l~~----~~~~~~g~v~N~~~~ 205 (207)
..+.+.|+|+++...... +.......+|.+++|.+.. ..+...+...+..+.+ .+.++ -+|.||.|-
T Consensus 70 ~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi-ilv~nK~Dl 142 (195)
T 3cbq_A 70 EEVTLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPV-ILVGNKSDL 142 (195)
T ss_dssp EEEEEEEECCCCCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCE-EEEEECTTC
T ss_pred EEEEEEEEecCCCccchhhhHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCE-EEEeechhc
Confidence 346778899985432211 2222344689999888775 3456666666666553 24555 588899873
No 428
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=90.45 E-value=0.55 Score=34.46 Aligned_cols=67 Identities=12% Similarity=0.004 Sum_probs=39.7
Q ss_pred CCCCEEEEcCCCCCC----cc----hhh-hhhhhcCceEEEeeCCchh---hHHHHHHHHHHhhhC--CCCeeEEEEccc
Q 028600 138 GNLDILVIDMPPGTG----DA----QLT-TTQTLQLSGALIVSTPQDV---ALIDARKGITMFSKV--QVPVCSFLAQII 203 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~----~~----~~~-~~~~~~~d~vi~v~~~~~~---~~~~~~~~l~~l~~~--~~~~~g~v~N~~ 203 (207)
..+.+.|+|+|+... .. ... ......+|.+++|.+.... ........+..+... +.++ -+|+|+.
T Consensus 74 ~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~pi-ilv~nK~ 152 (228)
T 2qu8_A 74 KLNKYQIIDTPGLLDRAFENRNTIEMTTITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSI-VIGFNKI 152 (228)
T ss_dssp TTEEEEEEECTTTTTSCGGGCCHHHHHHHHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCE-EEEEECG
T ss_pred CCCeEEEEECCCCcCcccchhhhHHHHHHHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcE-EEEEeCc
Confidence 346789999996522 11 011 1123457889988887643 223344556666654 5565 5899998
Q ss_pred cC
Q 028600 204 SS 205 (207)
Q Consensus 204 ~~ 205 (207)
|-
T Consensus 153 Dl 154 (228)
T 2qu8_A 153 DK 154 (228)
T ss_dssp GG
T ss_pred cc
Confidence 73
No 429
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=90.43 E-value=0.9 Score=37.72 Aligned_cols=67 Identities=15% Similarity=0.061 Sum_probs=44.7
Q ss_pred CCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCch-hhHHHHHHHHHHhhh----CCCCeeEEEEccccC
Q 028600 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDARKGITMFSK----VQVPVCSFLAQIISS 205 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~-~~~~~~~~~l~~l~~----~~~~~~g~v~N~~~~ 205 (207)
..+.+.|+|+++.-.........+..+|.+|+|++... .++..+...+..+.+ .+.++ -+|.||.|-
T Consensus 364 ~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~~p~-ilv~NK~Dl 435 (497)
T 3lvq_E 364 KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAII-LIFANKQDL 435 (497)
T ss_dssp SSCEEEEEEECCCGGGSGGGGGGGTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEE-EEEEECCSS
T ss_pred CCEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECcchhHHHHHHHHHHHHhhhhhcCCCcE-EEEEECCCC
Confidence 46789999999743322333445667999999998754 356666656555533 24554 589999883
No 430
>3uf0_A Short-chain dehydrogenase/reductase SDR; gluconate, gluconate 5-dehydratase, NAD(P) dependent, enzyme initiative, EFI, oxidoreductase; HET: NAP; 2.00A {Beutenbergia cavernae} SCOP: c.2.1.0
Probab=90.36 E-value=0.27 Score=37.47 Aligned_cols=33 Identities=18% Similarity=0.233 Sum_probs=29.0
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEe
Q 028600 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLD 68 (207)
Q Consensus 30 ~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD 68 (207)
.+|++.|+++.+|.|+ .+|..|++ .|.+|+++|
T Consensus 30 ~gk~~lVTGas~GIG~-----aia~~la~-~G~~V~~~~ 62 (273)
T 3uf0_A 30 AGRTAVVTGAGSGIGR-----AIAHGYAR-AGAHVLAWG 62 (273)
T ss_dssp TTCEEEEETTTSHHHH-----HHHHHHHH-TTCEEEEEE
T ss_pred CCCEEEEeCCCcHHHH-----HHHHHHHH-CCCEEEEEc
Confidence 4789999999998886 67888999 999999998
No 431
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=90.36 E-value=0.23 Score=38.23 Aligned_cols=34 Identities=29% Similarity=0.236 Sum_probs=24.1
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d 70 (207)
+++|.+ .+-.|+||||++..|+..+ .| ..+|+.|
T Consensus 2 ~~~I~l-~G~~GsGKST~a~~L~~~~---~~--~~~i~~D 35 (301)
T 1ltq_A 2 KKIILT-IGCPGSGKSTWAREFIAKN---PG--FYNINRD 35 (301)
T ss_dssp CEEEEE-ECCTTSSHHHHHHHHHHHS---TT--EEEECHH
T ss_pred CeEEEE-ECCCCCCHHHHHHHHHHhC---CC--cEEeccc
Confidence 345555 6889999999999988732 23 4566666
No 432
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=90.34 E-value=0.28 Score=35.41 Aligned_cols=28 Identities=29% Similarity=0.344 Sum_probs=23.7
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHhCC
Q 028600 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQ 61 (207)
Q Consensus 32 k~I~v~s~kgG~GkTt~a~~LA~~la~~~g 61 (207)
.+++++ +..|+||||+...|+..+.. .|
T Consensus 2 ~~i~i~-G~nG~GKTTll~~l~g~~~~-~G 29 (189)
T 2i3b_A 2 RHVFLT-GPPGVGKTTLIHKASEVLKS-SG 29 (189)
T ss_dssp CCEEEE-SCCSSCHHHHHHHHHHHHHH-TT
T ss_pred CEEEEE-CCCCChHHHHHHHHHhhccc-CC
Confidence 356774 78899999999999999985 88
No 433
>4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A
Probab=90.27 E-value=0.38 Score=40.18 Aligned_cols=29 Identities=38% Similarity=0.422 Sum_probs=25.2
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCe
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLK 63 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~ 63 (207)
.++|+|+++. ||||++..++..|.. .|.+
T Consensus 122 ~~~IaVTGTn---GKTTTt~ml~~iL~~-~g~~ 150 (494)
T 4hv4_A 122 RHGIAVAGTH---GKTTTTAMLSSIYAE-AGLD 150 (494)
T ss_dssp SEEEEEECSS---SHHHHHHHHHHHHHH-TTCC
T ss_pred CCEEEEecCC---ChHHHHHHHHHHHHh-cCCC
Confidence 5789998664 999999999999999 8864
No 434
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=90.21 E-value=0.34 Score=35.32 Aligned_cols=67 Identities=7% Similarity=-0.046 Sum_probs=43.2
Q ss_pred CCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCch-hhHHH-HHHHHHHhhhC--CCCeeEEEEccccC
Q 028600 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALID-ARKGITMFSKV--QVPVCSFLAQIISS 205 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~-~~~~~-~~~~l~~l~~~--~~~~~g~v~N~~~~ 205 (207)
..+.+.|+|+++.-.........+..+|.+|+|.+... .+... +...++.+.+. +.++ -+|.|+.|-
T Consensus 73 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~pi-ilv~nK~Dl 143 (214)
T 3q3j_B 73 QRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRV-LLIGCKTDL 143 (214)
T ss_dssp CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEE-EEEEECGGG
T ss_pred EEEEEEEEECCCCHhHHHHHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCE-EEEEEChhh
Confidence 55788999999643222233344557899999988764 35555 45566666554 4444 588899873
No 435
>3dii_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3dij_A* 3ged_A 3geg_A*
Probab=90.17 E-value=0.26 Score=36.88 Aligned_cols=36 Identities=25% Similarity=0.438 Sum_probs=29.5
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCC
Q 028600 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (207)
Q Consensus 30 ~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~ 71 (207)
|+|++.|+++.+|.|+ .+|..|++ .|.+|+++|-+.
T Consensus 1 m~k~vlVTGas~gIG~-----~ia~~l~~-~G~~V~~~~r~~ 36 (247)
T 3dii_A 1 MNRGVIVTGGGHGIGK-----QICLDFLE-AGDKVCFIDIDE 36 (247)
T ss_dssp -CCEEEEESTTSHHHH-----HHHHHHHH-TTCEEEEEESCH
T ss_pred CCCEEEEECCCCHHHH-----HHHHHHHH-CCCEEEEEeCCH
Confidence 3688999999998886 57888889 999999998653
No 436
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=90.09 E-value=0.31 Score=36.24 Aligned_cols=35 Identities=31% Similarity=0.319 Sum_probs=26.3
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCC
Q 028600 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (207)
Q Consensus 30 ~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~ 71 (207)
.+.+|+++ +..|+||||++..||..+ | ..++|.|.
T Consensus 15 ~~~~i~i~-G~~gsGKst~~~~l~~~l----g--~~~~d~d~ 49 (236)
T 1q3t_A 15 KTIQIAID-GPASSGKSTVAKIIAKDF----G--FTYLDTGA 49 (236)
T ss_dssp CCCEEEEE-CSSCSSHHHHHHHHHHHH----C--CEEEEHHH
T ss_pred CCcEEEEE-CCCCCCHHHHHHHHHHHc----C--CceecCCC
Confidence 36688885 778999999999888754 4 35677764
No 437
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=90.08 E-value=0.83 Score=32.02 Aligned_cols=64 Identities=6% Similarity=-0.031 Sum_probs=40.8
Q ss_pred CCCCEEEEcCCCCCCcc------hhhhhhh--hcCceEEEeeCCchhhHHHHHHHHHHhhhCCCCeeEEEEcccc
Q 028600 138 GNLDILVIDMPPGTGDA------QLTTTQT--LQLSGALIVSTPQDVALIDARKGITMFSKVQVPVCSFLAQIIS 204 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~------~~~~~~~--~~~d~vi~v~~~~~~~~~~~~~~l~~l~~~~~~~~g~v~N~~~ 204 (207)
..+.+.++|+|+..... ....... ..+|.+++|++... .......+..+.+.+.++ -+|.|+.|
T Consensus 52 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~--~~~~~~~~~~~~~~~~pi-ilv~nK~D 123 (188)
T 2wjg_A 52 NGEKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATA--LERNLYLTLQLMEMGANL-LLALNKMD 123 (188)
T ss_dssp TTEEEEEEECCCCSCCSSSSHHHHHHHHHHHHHCCSEEEEEEEGGG--HHHHHHHHHHHHTTTCCE-EEEEECHH
T ss_pred CCcEEEEEECCCcCccccccHHHHHHHHHHhccCCCEEEEEecchh--HHHHHHHHHHHHhcCCCE-EEEEEhhh
Confidence 34678899999643211 1111112 24899999988763 556666777777777776 47889876
No 438
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=90.07 E-value=0.16 Score=36.36 Aligned_cols=33 Identities=30% Similarity=0.387 Sum_probs=23.9
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEE
Q 028600 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVG 65 (207)
Q Consensus 32 k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~Vl 65 (207)
+++++ .+..|+||||+.-.|+..+....|..+.
T Consensus 2 ~ii~l-~GpsGaGKsTl~~~L~~~~~~~~~~~~~ 34 (186)
T 3a00_A 2 RPIVI-SGPSGTGKSTLLKKLFAEYPDSFGFSVS 34 (186)
T ss_dssp CCEEE-ESSSSSSHHHHHHHHHHHCGGGEECCCE
T ss_pred CEEEE-ECCCCCCHHHHHHHHHhhCCccceEEee
Confidence 56777 5788999999999999877632344433
No 439
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=89.97 E-value=0.41 Score=39.08 Aligned_cols=31 Identities=26% Similarity=0.259 Sum_probs=27.6
Q ss_pred CCCCCcHHHHHHHHHHHHHHhCCCeEEEEecC
Q 028600 39 GKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70 (207)
Q Consensus 39 ~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d 70 (207)
+..|+|||++...+...+.+ .|.+++++|-.
T Consensus 60 G~tGsGKs~~~~~li~~~~~-~g~~viv~Dpk 90 (437)
T 1e9r_A 60 GATGTGKSVLLRELAYTGLL-RGDRMVIVDPN 90 (437)
T ss_dssp ECTTSSHHHHHHHHHHHHHH-TTCEEEEEEET
T ss_pred CCCCCCHHHHHHHHHHHHHH-CCCcEEEEeCC
Confidence 77899999998889888888 89999999864
No 440
>2f00_A UDP-N-acetylmuramate--L-alanine ligase; amide bond ligase, ATPase, bacterial cell WALL; 2.50A {Escherichia coli}
Probab=89.93 E-value=0.48 Score=39.47 Aligned_cols=35 Identities=26% Similarity=0.271 Sum_probs=28.4
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCe-EEEEec
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLK-VGLLDA 69 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~-VlliD~ 69 (207)
.++|+|+++. ||||++.-++..|.. .|++ ++.+.-
T Consensus 119 ~~vI~VTGTn---GKTTTt~ml~~iL~~-~G~~p~~~igg 154 (491)
T 2f00_A 119 RHGIAIAGTH---GKTTTTAMVSSIYAE-AGLDPTFVNGG 154 (491)
T ss_dssp SEEEEEESSS---CHHHHHHHHHHHHHH-TTCCCEEEEEE
T ss_pred CCEEEEECCC---CHHHHHHHHHHHHHh-CCCCCEEEECC
Confidence 5799998665 999999999999999 8986 444443
No 441
>4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum}
Probab=89.83 E-value=0.28 Score=37.51 Aligned_cols=37 Identities=22% Similarity=0.178 Sum_probs=31.0
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCC
Q 028600 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (207)
Q Consensus 30 ~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~ 72 (207)
.+|++.|+++.+|.|+ .+|..|++ .|.+|+++|-+..
T Consensus 32 ~gk~~lVTGas~GIG~-----aia~~la~-~G~~V~~~~r~~~ 68 (275)
T 4imr_A 32 RGRTALVTGSSRGIGA-----AIAEGLAG-AGAHVILHGVKPG 68 (275)
T ss_dssp TTCEEEETTCSSHHHH-----HHHHHHHH-TTCEEEEEESSTT
T ss_pred CCCEEEEECCCCHHHH-----HHHHHHHH-CCCEEEEEcCCHH
Confidence 4789999999988876 57888889 9999999987653
No 442
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=89.81 E-value=0.35 Score=37.60 Aligned_cols=66 Identities=11% Similarity=0.010 Sum_probs=40.7
Q ss_pred CCCCEEEEcCCCCCCc-----chhhhhhhhcCceEEEeeCCch-hhHHHHHHHHHHhhh---C--CCCeeEEEEcccc
Q 028600 138 GNLDILVIDMPPGTGD-----AQLTTTQTLQLSGALIVSTPQD-VALIDARKGITMFSK---V--QVPVCSFLAQIIS 204 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~-----~~~~~~~~~~~d~vi~v~~~~~-~~~~~~~~~l~~l~~---~--~~~~~g~v~N~~~ 204 (207)
+.+.+.|+|+|+.-.. .......+..+|.+++|.+... .+.+.+....+++.+ . +.++ -+|.||.|
T Consensus 50 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~pi-ilv~NK~D 126 (307)
T 3r7w_A 50 GNMTLNLWDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKI-FVLLHKMD 126 (307)
T ss_dssp TTEEEEEEEECCSHHHHHHHHTTTHHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEE-EEEEECGG
T ss_pred CceEEEEEECCCcHHHhhhhhhhHHHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeE-EEEEeccc
Confidence 4578899999964211 1222333457999999998765 355555444333332 2 4554 68899987
No 443
>1o5i_A 3-oxoacyl-(acyl carrier protein) reductase; TM1169, structur genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.2
Probab=89.80 E-value=0.34 Score=36.31 Aligned_cols=38 Identities=16% Similarity=0.182 Sum_probs=31.0
Q ss_pred CCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCC
Q 028600 28 DGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (207)
Q Consensus 28 ~~~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~ 71 (207)
.-.+|++.|+++.||.|+ .+|..|++ .|.+|.+++-+.
T Consensus 16 ~~~~k~vlVTGas~gIG~-----~~a~~l~~-~G~~V~~~~r~~ 53 (249)
T 1o5i_A 16 GIRDKGVLVLAASRGIGR-----AVADVLSQ-EGAEVTICARNE 53 (249)
T ss_dssp CCTTCEEEEESCSSHHHH-----HHHHHHHH-TTCEEEEEESCH
T ss_pred ccCCCEEEEECCCCHHHH-----HHHHHHHH-CCCEEEEEcCCH
Confidence 344789999999999887 46788888 999999998654
No 444
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=89.79 E-value=0.29 Score=35.87 Aligned_cols=33 Identities=33% Similarity=0.410 Sum_probs=23.8
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecC
Q 028600 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70 (207)
Q Consensus 30 ~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d 70 (207)
.++.|.|+ +..|+||||+|..|+. .|. -+|..|
T Consensus 33 ~g~~ilI~-GpsGsGKStLA~~La~-----~g~--~iIsdD 65 (205)
T 2qmh_A 33 YGLGVLIT-GDSGVGKSETALELVQ-----RGH--RLIADD 65 (205)
T ss_dssp TTEEEEEE-CCCTTTTHHHHHHHHT-----TTC--EEEESS
T ss_pred CCEEEEEE-CCCCCCHHHHHHHHHH-----hCC--eEEecc
Confidence 36777774 7889999999888765 565 455555
No 445
>2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus}
Probab=89.79 E-value=0.26 Score=36.39 Aligned_cols=36 Identities=25% Similarity=0.442 Sum_probs=29.5
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCC
Q 028600 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (207)
Q Consensus 30 ~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~ 71 (207)
+.|++.|+++.||.|+ .+|..|++ .|.+|.+++-+.
T Consensus 4 ~~k~vlVtGasggiG~-----~~a~~l~~-~G~~V~~~~r~~ 39 (234)
T 2ehd_A 4 MKGAVLITGASRGIGE-----ATARLLHA-KGYRVGLMARDE 39 (234)
T ss_dssp CCCEEEESSTTSHHHH-----HHHHHHHH-TTCEEEEEESCH
T ss_pred CCCEEEEECCCcHHHH-----HHHHHHHH-CCCEEEEEECCH
Confidence 4678999999888875 67888888 999999997653
No 446
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=89.73 E-value=0.81 Score=36.65 Aligned_cols=37 Identities=8% Similarity=-0.069 Sum_probs=24.7
Q ss_pred CCCEEEEcCCCCCCcc-------hhhhhhhhcCceEEEeeCCch
Q 028600 139 NLDILVIDMPPGTGDA-------QLTTTQTLQLSGALIVSTPQD 175 (207)
Q Consensus 139 ~~D~IiiD~~~~~~~~-------~~~~~~~~~~d~vi~v~~~~~ 175 (207)
...+.++|+|+..... ...+..+..+|.+++|++...
T Consensus 65 ~~~i~lvDtpGl~~~a~~~~gl~~~fl~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 65 PTTMEFVDIAGLVAGASKGEGLGNKFLANIRETDAIGHVVRCFE 108 (363)
T ss_dssp CCEEEEEECCSCCTTHHHHGGGTCCHHHHHHTCSEEEEEEECSC
T ss_pred eeEEEEEECCCCcccccccchHHHHHHHHHHhcCeEEEEEecCC
Confidence 3679999999643311 111334568999999988764
No 447
>4b79_A PA4098, probable short-chain dehydrogenase; oxidoreductase, infectious disease, structure-based inhibito; HET: NAD; 1.98A {Pseudomonas aeruginosa PAO1}
Probab=89.73 E-value=0.36 Score=36.37 Aligned_cols=36 Identities=25% Similarity=0.383 Sum_probs=31.8
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~ 72 (207)
+|++.|+++.+|.|+. +|..|++ .|.+|++.|.+..
T Consensus 11 GK~alVTGas~GIG~a-----ia~~la~-~Ga~Vv~~~~~~~ 46 (242)
T 4b79_A 11 GQQVLVTGGSSGIGAA-----IAMQFAE-LGAEVVALGLDAD 46 (242)
T ss_dssp TCEEEEETTTSHHHHH-----HHHHHHH-TTCEEEEEESSTT
T ss_pred CCEEEEeCCCCHHHHH-----HHHHHHH-CCCEEEEEeCCHH
Confidence 7999999999998865 6889999 9999999998753
No 448
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=89.69 E-value=0.55 Score=33.03 Aligned_cols=67 Identities=7% Similarity=-0.017 Sum_probs=40.9
Q ss_pred CCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCch-hhHHHH-HHHHHHhhhC--CCCeeEEEEccccC
Q 028600 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDA-RKGITMFSKV--QVPVCSFLAQIISS 205 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~-~~~~~~-~~~l~~l~~~--~~~~~g~v~N~~~~ 205 (207)
..+.+.|+|+|+.-.........+..+|.+++|.+... .+...+ ...+..+.+. +.++ -+|.|+.|-
T Consensus 53 ~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~pi-ilv~nK~Dl 123 (184)
T 1m7b_A 53 QRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKM-LLVGCKSDL 123 (184)
T ss_dssp CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEE-EEEEECGGG
T ss_pred EEEEEEEEECCCChhhhhhHHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCE-EEEEEcchh
Confidence 45678999999642211222334457899999988754 355555 3444555442 4444 588899873
No 449
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=89.68 E-value=0.31 Score=35.93 Aligned_cols=22 Identities=27% Similarity=0.323 Sum_probs=18.4
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHH
Q 028600 34 IAVASGKGGVGKSTTAVNLAVAL 56 (207)
Q Consensus 34 I~v~s~kgG~GkTt~a~~LA~~l 56 (207)
|.| .+..|+||||++..||..+
T Consensus 3 I~l-~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 3 ILI-FGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEE-ECCTTSCHHHHHHHHHHHH
T ss_pred EEE-ECCCCCCHHHHHHHHHHHh
Confidence 455 5889999999999998865
No 450
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=89.66 E-value=0.25 Score=36.07 Aligned_cols=22 Identities=27% Similarity=0.223 Sum_probs=18.0
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHH
Q 028600 34 IAVASGKGGVGKSTTAVNLAVAL 56 (207)
Q Consensus 34 I~v~s~kgG~GkTt~a~~LA~~l 56 (207)
|+| .+..|+||||++..||..+
T Consensus 3 I~l-~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 3 IIL-LGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEE-EESTTSSHHHHHHHHHHHH
T ss_pred EEE-ECCCCCCHHHHHHHHHHHh
Confidence 555 4778999999999998865
No 451
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=89.61 E-value=0.43 Score=42.40 Aligned_cols=34 Identities=24% Similarity=0.328 Sum_probs=28.0
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEE
Q 028600 34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLL 67 (207)
Q Consensus 34 I~v~s~kgG~GkTt~a~~LA~~la~~~g~~Vlli 67 (207)
+.+..+-+|+|||++...++..+.+..+.+|++.
T Consensus 373 ~~lI~GppGTGKT~ti~~~i~~l~~~~~~~ilv~ 406 (800)
T 2wjy_A 373 LSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVC 406 (800)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTTCSSCEEEE
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence 4556799999999999999998886357788776
No 452
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=89.61 E-value=0.58 Score=35.66 Aligned_cols=41 Identities=5% Similarity=-0.054 Sum_probs=33.5
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~ 73 (207)
++++.+ ++-+|.||||++.+++..-++ .|.+++++.++...
T Consensus 21 gs~~li-~g~p~~~~~~l~~qfl~~g~~-~Ge~~~~~~~~e~~ 61 (260)
T 3bs4_A 21 SLILIH-EEDASSRGKDILFYILSRKLK-SDNLVGMFSISYPL 61 (260)
T ss_dssp CEEEEE-ECSGGGCHHHHHHHHHHHHHH-TTCEEEEEECSSCH
T ss_pred CcEEEE-EeCCCccHHHHHHHHHHHHHH-CCCcEEEEEEeCCH
Confidence 667777 556666777999999999999 99999999998644
No 453
>3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0
Probab=89.56 E-value=0.32 Score=36.17 Aligned_cols=35 Identities=20% Similarity=0.356 Sum_probs=29.9
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~ 71 (207)
+|++.|+++.+|.|+ .+|..|++ .|.+|.+++-+.
T Consensus 3 ~k~vlVTGas~GIG~-----a~a~~l~~-~G~~V~~~~r~~ 37 (235)
T 3l6e_A 3 LGHIIVTGAGSGLGR-----ALTIGLVE-RGHQVSMMGRRY 37 (235)
T ss_dssp CCEEEEESTTSHHHH-----HHHHHHHH-TTCEEEEEESCH
T ss_pred CCEEEEECCCCHHHH-----HHHHHHHH-CCCEEEEEECCH
Confidence 578999999999886 67888999 999999998753
No 454
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=89.53 E-value=0.36 Score=36.15 Aligned_cols=36 Identities=19% Similarity=0.156 Sum_probs=27.1
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~ 71 (207)
++-+.+ .+.+|+|||+++..+|..+ +.++..+++..
T Consensus 39 ~~~vll-~G~~GtGKT~la~~la~~~----~~~~~~~~~~~ 74 (262)
T 2qz4_A 39 PKGALL-LGPPGCGKTLLAKAVATEA----QVPFLAMAGAE 74 (262)
T ss_dssp CCEEEE-ESCTTSSHHHHHHHHHHHH----TCCEEEEETTT
T ss_pred CceEEE-ECCCCCCHHHHHHHHHHHh----CCCEEEechHH
Confidence 344555 5888999999999998754 56788887754
No 455
>3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus}
Probab=89.50 E-value=0.32 Score=36.97 Aligned_cols=36 Identities=19% Similarity=0.368 Sum_probs=30.6
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCC
Q 028600 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (207)
Q Consensus 30 ~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~ 71 (207)
++|++.|+++.+|.|+ .+|..|++ .|.+|++++-+.
T Consensus 15 ~~k~vlVTGas~gIG~-----aia~~l~~-~G~~V~~~~r~~ 50 (266)
T 3p19_A 15 MKKLVVITGASSGIGE-----AIARRFSE-EGHPLLLLARRV 50 (266)
T ss_dssp CCCEEEEESTTSHHHH-----HHHHHHHH-TTCCEEEEESCH
T ss_pred CCCEEEEECCCCHHHH-----HHHHHHHH-CCCEEEEEECCH
Confidence 4689999999999887 67888999 999999998653
No 456
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=89.49 E-value=0.58 Score=39.00 Aligned_cols=64 Identities=11% Similarity=0.023 Sum_probs=39.7
Q ss_pred CCCCEEEEcCCCCC-Ccc--------hhhhhhhhcCceEEEeeCCchh-hHHHHHHHHHHhhhCCCCeeEEEEccccC
Q 028600 138 GNLDILVIDMPPGT-GDA--------QLTTTQTLQLSGALIVSTPQDV-ALIDARKGITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 138 ~~~D~IiiD~~~~~-~~~--------~~~~~~~~~~d~vi~v~~~~~~-~~~~~~~~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
.++.++|+|||+.- ... ..+...+..+|.+++|++.+.. +... .++++.+. +.++ -+|+||.|-
T Consensus 289 ~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~-~~il~~l~--~~pi-ivV~NK~DL 362 (482)
T 1xzp_A 289 RGILFRIVDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEED-RKILERIK--NKRY-LVVINKVDV 362 (482)
T ss_dssp TTEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHHHCSEEEEEEETTSCCCHHH-HHHHHHHT--TSSE-EEEEEECSS
T ss_pred CCeEEEEEECCCccccchhhHHHHHHHHHHHHhhcccEEEEEecCCCCCCHHH-HHHHHHhc--CCCE-EEEEECccc
Confidence 45678999999643 111 1224456689999999987543 3333 34445442 4454 599999984
No 457
>4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli}
Probab=89.44 E-value=0.36 Score=37.08 Aligned_cols=35 Identities=11% Similarity=0.190 Sum_probs=30.8
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~ 71 (207)
+|++.|+++.+|.|+. +|..|++ .|.+|++.|-+.
T Consensus 29 gKvalVTGas~GIG~a-----iA~~la~-~Ga~V~i~~r~~ 63 (273)
T 4fgs_A 29 AKIAVITGATSGIGLA-----AAKRFVA-EGARVFITGRRK 63 (273)
T ss_dssp TCEEEEESCSSHHHHH-----HHHHHHH-TTCEEEEEESCH
T ss_pred CCEEEEeCcCCHHHHH-----HHHHHHH-CCCEEEEEECCH
Confidence 7999999999999975 6888999 999999998653
No 458
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=89.39 E-value=0.26 Score=38.62 Aligned_cols=39 Identities=18% Similarity=0.238 Sum_probs=30.3
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~ 73 (207)
.+++++ .+.-|+||||+.-.|... . .|+|+++|.-|...
T Consensus 4 i~v~~i-~G~~GaGKTTll~~l~~~--~-~~~~~aVi~~d~G~ 42 (318)
T 1nij_A 4 IAVTLL-TGFLGAGKTTLLRHILNE--Q-HGYKIAVIENEFGE 42 (318)
T ss_dssp EEEEEE-EESSSSSCHHHHHHHHHS--C-CCCCEEEECSSCCS
T ss_pred ccEEEE-EecCCCCHHHHHHHHHhh--c-CCCcEEEEEecCcc
Confidence 566667 467899999999888764 3 68999999877543
No 459
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=89.34 E-value=0.27 Score=35.59 Aligned_cols=26 Identities=27% Similarity=0.348 Sum_probs=20.9
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHH
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALA 57 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la 57 (207)
++.++++ +..|+||||+...|+..+.
T Consensus 4 g~~i~lv-GpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 4 PRPVVLS-GPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp -CCEEEE-CCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEE-CCCCCCHHHHHHHHHhhCc
Confidence 5677774 7889999999999988764
No 460
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=89.34 E-value=0.36 Score=35.21 Aligned_cols=26 Identities=38% Similarity=0.452 Sum_probs=21.5
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHH
Q 028600 32 DVIAVASGKGGVGKSTTAVNLAVALAS 58 (207)
Q Consensus 32 k~I~v~s~kgG~GkTt~a~~LA~~la~ 58 (207)
+.+.+ .+.+|+||||++..++..+..
T Consensus 46 ~~~ll-~G~~G~GKT~l~~~~~~~~~~ 71 (250)
T 1njg_A 46 HAYLF-SGTRGVGKTSIARLLAKGLNC 71 (250)
T ss_dssp SEEEE-ECSTTSCHHHHHHHHHHHHHC
T ss_pred eEEEE-ECCCCCCHHHHHHHHHHHhcC
Confidence 45555 688999999999999988876
No 461
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=89.32 E-value=0.25 Score=36.01 Aligned_cols=21 Identities=24% Similarity=0.400 Sum_probs=17.2
Q ss_pred EEEEeCCCCCcHHHHHHHHHHH
Q 028600 34 IAVASGKGGVGKSTTAVNLAVA 55 (207)
Q Consensus 34 I~v~s~kgG~GkTt~a~~LA~~ 55 (207)
|.+ .+..|+||||++..||..
T Consensus 3 I~l-~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 3 LVL-MGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp EEE-ECSTTSSHHHHHHHHHHH
T ss_pred EEE-ECCCCCCHHHHHHHHHHH
Confidence 555 588999999999998764
No 462
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=89.24 E-value=0.22 Score=41.50 Aligned_cols=65 Identities=8% Similarity=-0.054 Sum_probs=35.5
Q ss_pred CCCCEEEEcCCCCCCcch--------hhhhhhhcCceEEEeeCCchhhHH----HHHHHHHHhhhCCCCeeEEEEccccC
Q 028600 138 GNLDILVIDMPPGTGDAQ--------LTTTQTLQLSGALIVSTPQDVALI----DARKGITMFSKVQVPVCSFLAQIISS 205 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~--------~~~~~~~~~d~vi~v~~~~~~~~~----~~~~~l~~l~~~~~~~~g~v~N~~~~ 205 (207)
.++.+.|+|||+.-.... .+...+..+|.+++|++.+..... .....++.+. +.+ +-+|+||.|-
T Consensus 279 ~g~~l~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~--~~p-iIvV~NK~Dl 355 (476)
T 3gee_A 279 DKTMFRLTDTAGLREAGEEIEHEGIRRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAHP--AAK-FLTVANKLDR 355 (476)
T ss_dssp TTEEEEEEC--------------------CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT--TSE-EEEEEECTTS
T ss_pred CCeEEEEEECCCCCcchhHHHHHHHHHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhcC--CCC-EEEEEECcCC
Confidence 457899999996321110 112234579999999988754322 4444555544 344 4689999884
No 463
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=89.22 E-value=5.7 Score=31.76 Aligned_cols=37 Identities=8% Similarity=-0.044 Sum_probs=24.7
Q ss_pred CCCEEEEcCCCCCCcc-------hhhhhhhhcCceEEEeeCCch
Q 028600 139 NLDILVIDMPPGTGDA-------QLTTTQTLQLSGALIVSTPQD 175 (207)
Q Consensus 139 ~~D~IiiD~~~~~~~~-------~~~~~~~~~~d~vi~v~~~~~ 175 (207)
...+.++|+|+..... ...+..+..+|.+++|++...
T Consensus 68 ~~~i~lvDtpGl~~~a~~~~~lg~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 68 PTHVEFVDIAGLVKGAHKGEGLGNQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp CCEEEEEECCSCCCCCCSSSCTTHHHHHHHHTCSEEEEEEECCC
T ss_pred CceEEEEECCCccccccccchHHHHHHHHHHhCCEEEEEEECCC
Confidence 3569999999743211 122344668999999988764
No 464
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=89.17 E-value=0.18 Score=39.22 Aligned_cols=38 Identities=21% Similarity=0.295 Sum_probs=31.0
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCC
Q 028600 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (207)
Q Consensus 33 ~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~ 72 (207)
-+.+ .+..|+|||++|..++....+ .+.+.+.+++...
T Consensus 27 ~vLi-~Ge~GtGKt~lAr~i~~~~~~-~~~~~v~v~~~~~ 64 (304)
T 1ojl_A 27 TVLI-HGDSGTGKELVARALHACSAR-SDRPLVTLNCAAL 64 (304)
T ss_dssp CEEE-ESCTTSCHHHHHHHHHHHSSC-SSSCCCEEECSSC
T ss_pred cEEE-ECCCCchHHHHHHHHHHhCcc-cCCCeEEEeCCCC
Confidence 3445 588999999999999998777 7888999988653
No 465
>2ekp_A 2-deoxy-D-gluconate 3-dehydrogenase; structural genomics, NPPSFA, nation project on protein structural and functional analyses; HET: NAD; 1.15A {Thermus thermophilus} PDB: 1x1e_A* 2ekq_A
Probab=89.14 E-value=0.37 Score=35.80 Aligned_cols=35 Identities=23% Similarity=0.403 Sum_probs=29.7
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~ 71 (207)
+|++.|+++.||.|+ .+|..|++ .|.+|.+++-+.
T Consensus 2 ~k~vlVTGas~giG~-----~~a~~l~~-~G~~V~~~~r~~ 36 (239)
T 2ekp_A 2 ERKALVTGGSRGIGR-----AIAEALVA-RGYRVAIASRNP 36 (239)
T ss_dssp CCEEEEETTTSHHHH-----HHHHHHHH-TTCEEEEEESSC
T ss_pred CCEEEEeCCCcHHHH-----HHHHHHHH-CCCEEEEEeCCH
Confidence 578999999998886 57888889 999999998765
No 466
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=89.13 E-value=0.51 Score=41.64 Aligned_cols=66 Identities=20% Similarity=0.039 Sum_probs=42.3
Q ss_pred CCCEEEEcCCCCCCcc----------h---hhh-hhhhcCceEEEeeCCchh-hHHHHHHHHHHhhhCCCCeeEEEEccc
Q 028600 139 NLDILVIDMPPGTGDA----------Q---LTT-TQTLQLSGALIVSTPQDV-ALIDARKGITMFSKVQVPVCSFLAQII 203 (207)
Q Consensus 139 ~~D~IiiD~~~~~~~~----------~---~~~-~~~~~~d~vi~v~~~~~~-~~~~~~~~l~~l~~~~~~~~g~v~N~~ 203 (207)
..+++++|+|+-.... . ... .....+|.+++|+++... ...+...+++.+...+.++ -+|+||+
T Consensus 149 ~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll~~L~~~g~pv-IlVlNKi 227 (772)
T 3zvr_A 149 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRT-IGVITKL 227 (772)
T ss_dssp CCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHHHHHHCTTCSSE-EEEEECT
T ss_pred CCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHHHHHHHhcCCCE-EEEEeCc
Confidence 5689999999643310 0 101 111357888888887643 2334446778888878787 4889999
Q ss_pred cC
Q 028600 204 SS 205 (207)
Q Consensus 204 ~~ 205 (207)
|.
T Consensus 228 Dl 229 (772)
T 3zvr_A 228 DL 229 (772)
T ss_dssp TS
T ss_pred cc
Confidence 84
No 467
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=89.11 E-value=0.63 Score=40.93 Aligned_cols=39 Identities=26% Similarity=0.250 Sum_probs=32.8
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCCC
Q 028600 33 VIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVYG 73 (207)
Q Consensus 33 ~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~~ 73 (207)
.+.| .+.+|+|||++|..+|..+.. .+.+++.+|+....
T Consensus 523 ~~Ll-~Gp~GtGKT~lA~ala~~l~~-~~~~~i~i~~s~~~ 561 (758)
T 3pxi_A 523 SFIF-LGPTGVGKTELARALAESIFG-DEESMIRIDMSEYM 561 (758)
T ss_dssp EEEE-ESCTTSSHHHHHHHHHHHHHS-CTTCEEEEEGGGGC
T ss_pred EEEE-ECCCCCCHHHHHHHHHHHhcC-CCcceEEEechhcc
Confidence 4555 588899999999999999988 89999999986543
No 468
>3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV}
Probab=89.06 E-value=0.25 Score=37.38 Aligned_cols=38 Identities=16% Similarity=0.047 Sum_probs=30.1
Q ss_pred CCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCC
Q 028600 28 DGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (207)
Q Consensus 28 ~~~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~ 71 (207)
.-.+|++.|+++.+|.|+ .+|..|++ .|.+|+++|-+.
T Consensus 24 ~l~~k~vlVTGas~gIG~-----aia~~l~~-~G~~V~~~~r~~ 61 (260)
T 3gem_A 24 TLSSAPILITGASQRVGL-----HCALRLLE-HGHRVIISYRTE 61 (260)
T ss_dssp ---CCCEEESSTTSHHHH-----HHHHHHHH-TTCCEEEEESSC
T ss_pred CCCCCEEEEECCCCHHHH-----HHHHHHHH-CCCEEEEEeCCh
Confidence 334688999999988776 67888999 999999998765
No 469
>4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius}
Probab=89.05 E-value=0.37 Score=36.60 Aligned_cols=35 Identities=20% Similarity=0.267 Sum_probs=30.7
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~ 71 (207)
+|++.|+++.+|.|+. +|..|++ .|.+|++.|.+.
T Consensus 7 gKvalVTGas~GIG~a-----iA~~la~-~Ga~Vv~~~~~~ 41 (254)
T 4fn4_A 7 NKVVIVTGAGSGIGRA-----IAKKFAL-NDSIVVAVELLE 41 (254)
T ss_dssp TCEEEEETTTSHHHHH-----HHHHHHH-TTCEEEEEESCH
T ss_pred CCEEEEeCCCCHHHHH-----HHHHHHH-cCCEEEEEECCH
Confidence 7999999999998876 6788899 999999998764
No 470
>3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus}
Probab=89.02 E-value=0.27 Score=36.26 Aligned_cols=35 Identities=17% Similarity=0.194 Sum_probs=27.5
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~ 71 (207)
||++.|+++.+|.|+ .+|..|++ .|.+|.+++-+.
T Consensus 1 Mk~vlVTGas~gIG~-----~~a~~l~~-~G~~V~~~~r~~ 35 (230)
T 3guy_A 1 MSLIVITGASSGLGA-----ELAKLYDA-EGKATYLTGRSE 35 (230)
T ss_dssp --CEEEESTTSHHHH-----HHHHHHHH-TTCCEEEEESCH
T ss_pred CCEEEEecCCchHHH-----HHHHHHHH-CCCEEEEEeCCH
Confidence 478899999988776 56778888 999999998654
No 471
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=89.00 E-value=0.099 Score=39.69 Aligned_cols=27 Identities=26% Similarity=0.151 Sum_probs=21.7
Q ss_pred CCCeEEEEEeCCCCCcHHHHHHHHHHHH
Q 028600 29 GVKDVIAVASGKGGVGKSTTAVNLAVAL 56 (207)
Q Consensus 29 ~~~k~I~v~s~kgG~GkTt~a~~LA~~l 56 (207)
+.++.|+|. +-.|+||||++..||..+
T Consensus 22 ~~~~~I~ie-G~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 22 TRIKKISIE-GNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp -CCEEEEEE-CSTTSSHHHHHTTTGGGC
T ss_pred cCceEEEEE-CCCCCCHHHHHHHHHHhc
Confidence 447788884 888999999999998765
No 472
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=88.98 E-value=0.35 Score=35.77 Aligned_cols=27 Identities=26% Similarity=0.299 Sum_probs=23.0
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHH
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALAS 58 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~ 58 (207)
++.|+| .+-.|+||||.+..|+..+..
T Consensus 5 g~~i~~-eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 5 GKLILI-EGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCEEEE-EECSSSSHHHHHHHHHHHHCS
T ss_pred CeEEEE-ECCCCCCHHHHHHHHHHHhcc
Confidence 678888 477899999999999998865
No 473
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=88.93 E-value=0.26 Score=35.39 Aligned_cols=32 Identities=28% Similarity=0.242 Sum_probs=24.9
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCC
Q 028600 34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (207)
Q Consensus 34 I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~ 71 (207)
|.| .+-.|+|||++|..||.. |.++++++...
T Consensus 2 ilV-~Gg~~SGKS~~A~~la~~-----~~~~~yiaT~~ 33 (180)
T 1c9k_A 2 ILV-TGGARSGKSRHAEALIGD-----APQVLYIATSQ 33 (180)
T ss_dssp EEE-EECTTSSHHHHHHHHHCS-----CSSEEEEECCC
T ss_pred EEE-ECCCCCcHHHHHHHHHhc-----CCCeEEEecCC
Confidence 344 467899999999988753 67899998865
No 474
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=88.90 E-value=0.35 Score=37.77 Aligned_cols=35 Identities=26% Similarity=0.113 Sum_probs=26.5
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCC
Q 028600 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (207)
Q Consensus 32 k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~ 71 (207)
+.+.| .+..|+|||+++..++..+. .+++++++..
T Consensus 31 ~~v~i-~G~~G~GKT~L~~~~~~~~~----~~~~~~~~~~ 65 (357)
T 2fna_A 31 PITLV-LGLRRTGKSSIIKIGINELN----LPYIYLDLRK 65 (357)
T ss_dssp SEEEE-EESTTSSHHHHHHHHHHHHT----CCEEEEEGGG
T ss_pred CcEEE-ECCCCCCHHHHHHHHHHhcC----CCEEEEEchh
Confidence 34444 68899999999999887643 3578888764
No 475
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=88.82 E-value=0.19 Score=36.75 Aligned_cols=33 Identities=30% Similarity=0.327 Sum_probs=24.3
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCC
Q 028600 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (207)
Q Consensus 32 k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~ 71 (207)
.+|++ .+..|+||||++..||.. .|. .++|.|.
T Consensus 4 ~~i~i-~G~~gsGkst~~~~l~~~----~g~--~~~~~d~ 36 (219)
T 2h92_A 4 INIAL-DGPAAAGKSTIAKRVASE----LSM--IYVDTGA 36 (219)
T ss_dssp CCEEE-ECCTTSSHHHHHHHHHHH----TTC--EEEEHHH
T ss_pred eEEEE-ECCCCCCHHHHHHHHHHh----cCC--ceecCCh
Confidence 45666 588899999999888764 353 5677764
No 476
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=88.80 E-value=1.4 Score=30.46 Aligned_cols=61 Identities=5% Similarity=0.015 Sum_probs=39.6
Q ss_pred CCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCc-hhhHHHHHHHHHHhhhC------CCCeeEEEEccccC
Q 028600 139 NLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQ-DVALIDARKGITMFSKV------QVPVCSFLAQIISS 205 (207)
Q Consensus 139 ~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~-~~~~~~~~~~l~~l~~~------~~~~~g~v~N~~~~ 205 (207)
.+.+.|+|+++... ......+|.+++|.+.. +.+...+...++++... +.++ -+|.|+.|-
T Consensus 53 ~~~l~i~Dt~G~~~-----~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~pi-ilv~nK~Dl 120 (178)
T 2iwr_A 53 THLVLIREEAGAPD-----AKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLAL-ALVGTQDRI 120 (178)
T ss_dssp EEEEEEEECSSSCC-----HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEE-EEEEECTTC
T ss_pred EEEEEEEECCCCch-----hHHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCE-EEEEECccc
Confidence 46688999996433 22344799999998875 34666666654444432 3444 688899873
No 477
>3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis}
Probab=88.68 E-value=0.41 Score=36.62 Aligned_cols=36 Identities=28% Similarity=0.231 Sum_probs=30.7
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCC
Q 028600 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (207)
Q Consensus 30 ~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~ 71 (207)
.+|++.|+++.+|.|+ .+|..|++ .|.+|+++|-+.
T Consensus 28 ~gk~vlVTGas~gIG~-----aia~~la~-~G~~V~~~~r~~ 63 (277)
T 3gvc_A 28 AGKVAIVTGAGAGIGL-----AVARRLAD-EGCHVLCADIDG 63 (277)
T ss_dssp TTCEEEETTTTSTHHH-----HHHHHHHH-TTCEEEEEESSH
T ss_pred CCCEEEEECCCcHHHH-----HHHHHHHH-CCCEEEEEeCCH
Confidence 3689999999999887 57888889 999999998653
No 478
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=88.25 E-value=0.086 Score=38.08 Aligned_cols=66 Identities=12% Similarity=0.086 Sum_probs=40.1
Q ss_pred CCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCch-hhHHHHH-HHHHHhhhC--CCCeeEEEEcccc
Q 028600 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDAR-KGITMFSKV--QVPVCSFLAQIIS 204 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~-~~~~~~~-~~l~~l~~~--~~~~~g~v~N~~~ 204 (207)
..+.+.|+|+|+.-.........+..+|.+++|.+... .+...+. ..+..+.+. +.++ -+|.||.|
T Consensus 76 ~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~~~pi-ilv~NK~D 145 (204)
T 3th5_A 76 KPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPI-ILVGTKLD 145 (204)
Confidence 45677799999643222222334456899999988654 3455554 444555443 4554 58889987
No 479
>1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A*
Probab=88.45 E-value=0.38 Score=36.11 Aligned_cols=35 Identities=20% Similarity=0.081 Sum_probs=29.4
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~ 71 (207)
||++.|+++.+|.|+ .+|..|++ .|.+|.++|-+.
T Consensus 1 Mk~vlVTGas~gIG~-----~ia~~l~~-~G~~V~~~~r~~ 35 (254)
T 1zmt_A 1 MSTAIVTNVKHFGGM-----GSALRLSE-AGHTVACHDESF 35 (254)
T ss_dssp -CEEEESSTTSTTHH-----HHHHHHHH-TTCEEEECCGGG
T ss_pred CeEEEEeCCCchHHH-----HHHHHHHH-CCCEEEEEeCCH
Confidence 478999999999997 47888889 999999987664
No 480
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=88.42 E-value=0.45 Score=39.92 Aligned_cols=36 Identities=25% Similarity=0.219 Sum_probs=27.8
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~ 71 (207)
.+.+.+ .+..|+||||++..+|..+ |.+++.+++..
T Consensus 77 ~~~lLL-~GppGtGKTtla~~la~~l----~~~~i~in~s~ 112 (516)
T 1sxj_A 77 FRAAML-YGPPGIGKTTAAHLVAQEL----GYDILEQNASD 112 (516)
T ss_dssp CSEEEE-ECSTTSSHHHHHHHHHHHT----TCEEEEECTTS
T ss_pred CcEEEE-ECCCCCCHHHHHHHHHHHc----CCCEEEEeCCC
Confidence 355655 6889999999999888754 77888887654
No 481
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=88.39 E-value=0.39 Score=34.86 Aligned_cols=26 Identities=31% Similarity=0.427 Sum_probs=22.0
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHH
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALA 57 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la 57 (207)
+.++++. +..|+||||+.-.|+-.+.
T Consensus 20 Gei~~l~-GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 20 GRVVVLS-GPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CCEEEEE-CSTTSSHHHHHHHHHHHST
T ss_pred CCEEEEE-CCCCCCHHHHHHHHHhhCC
Confidence 7788885 7889999999999988663
No 482
>3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0
Probab=88.39 E-value=0.49 Score=35.92 Aligned_cols=35 Identities=26% Similarity=0.340 Sum_probs=30.1
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~ 71 (207)
+|++.|+++.+|.|+ .+|..|++ .|.+|+++|-+.
T Consensus 11 ~k~vlVTGas~gIG~-----aia~~l~~-~G~~V~~~~r~~ 45 (271)
T 3tzq_B 11 NKVAIITGACGGIGL-----ETSRVLAR-AGARVVLADLPE 45 (271)
T ss_dssp TCEEEEETTTSHHHH-----HHHHHHHH-TTCEEEEEECTT
T ss_pred CCEEEEECCCcHHHH-----HHHHHHHH-CCCEEEEEcCCH
Confidence 689999999998776 67888889 999999998764
No 483
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=88.36 E-value=0.53 Score=36.49 Aligned_cols=66 Identities=12% Similarity=0.062 Sum_probs=40.5
Q ss_pred CCCCEEEEcCCCCCCcchhhhhhhhcCceEEEeeCCch-hhHHHHH-HHHHHhhhC--CCCeeEEEEcccc
Q 028600 138 GNLDILVIDMPPGTGDAQLTTTQTLQLSGALIVSTPQD-VALIDAR-KGITMFSKV--QVPVCSFLAQIIS 204 (207)
Q Consensus 138 ~~~D~IiiD~~~~~~~~~~~~~~~~~~d~vi~v~~~~~-~~~~~~~-~~l~~l~~~--~~~~~g~v~N~~~ 204 (207)
..+.+.|+|+|+.-.........+..+|.+++|.+... .+...+. ..++.+.+. +.++ -+|.||.|
T Consensus 201 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~-ilv~nK~D 270 (332)
T 2wkq_A 201 KPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPI-ILVGTKLD 270 (332)
T ss_dssp EEEEEEEEEECCCGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSCE-EEEEECHH
T ss_pred EEEEEEEEeCCCchhhhHHHHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCCCCcE-EEEEEchh
Confidence 34567799999642222222334557899999988754 4555554 344455443 5565 58899986
No 484
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=88.35 E-value=0.54 Score=37.51 Aligned_cols=35 Identities=31% Similarity=0.418 Sum_probs=26.9
Q ss_pred eEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCC
Q 028600 32 DVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (207)
Q Consensus 32 k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~ 71 (207)
..+.+ .+..|+|||+++..+|..+ |.++..+++..
T Consensus 73 ~~ill-~Gp~GtGKT~la~~la~~l----~~~~~~~~~~~ 107 (376)
T 1um8_A 73 SNILL-IGPTGSGKTLMAQTLAKHL----DIPIAISDATS 107 (376)
T ss_dssp CCEEE-ECCTTSSHHHHHHHHHHHT----TCCEEEEEGGG
T ss_pred CCEEE-ECCCCCCHHHHHHHHHHHh----CCCEEEecchh
Confidence 34555 5888999999999988754 67888888754
No 485
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=88.33 E-value=0.48 Score=33.76 Aligned_cols=24 Identities=33% Similarity=0.541 Sum_probs=19.7
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHHH
Q 028600 33 VIAVASGKGGVGKSTTAVNLAVALA 57 (207)
Q Consensus 33 ~I~v~s~kgG~GkTt~a~~LA~~la 57 (207)
.+++ -+..|+||||+...|+..+.
T Consensus 2 ~i~l-~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIII-TGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEE-ECCTTSSHHHHHHHHHHHHG
T ss_pred EEEE-ECCCCCCHHHHHHHHHHHhC
Confidence 3556 48899999999999998874
No 486
>1fjh_A 3alpha-hydroxysteroid dehydrogenase/carbonyl reductase; short chain dehydrogenase, SDR, xenobiotic, metyrapone, oligomerisation; 1.68A {Comamonas testosteroni} SCOP: c.2.1.2 PDB: 1fk8_A*
Probab=88.31 E-value=0.47 Score=35.45 Aligned_cols=35 Identities=14% Similarity=0.217 Sum_probs=29.0
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~ 71 (207)
||++.|+++.||.|+ .+|..|++ .|.+|.+++-+.
T Consensus 1 mk~vlVTGas~gIG~-----~~a~~l~~-~G~~V~~~~r~~ 35 (257)
T 1fjh_A 1 MSIIVISGCATGIGA-----ATRKVLEA-AGHQIVGIDIRD 35 (257)
T ss_dssp CCEEEEETTTSHHHH-----HHHHHHHH-TTCEEEEEESSS
T ss_pred CCEEEEeCCCCHHHH-----HHHHHHHH-CCCEEEEEeCCc
Confidence 468899999888877 47788888 999999998765
No 487
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=88.28 E-value=0.7 Score=37.75 Aligned_cols=39 Identities=28% Similarity=0.340 Sum_probs=30.9
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~ 71 (207)
+.+++| .+..|+||||+...|+..+.. ...++.+++-+.
T Consensus 167 ggii~I-~GpnGSGKTTlL~allg~l~~-~~g~I~~~ed~i 205 (418)
T 1p9r_A 167 HGIILV-TGPTGSGKSTTLYAGLQELNS-SERNILTVEDPI 205 (418)
T ss_dssp SEEEEE-ECSTTSCHHHHHHHHHHHHCC-TTSCEEEEESSC
T ss_pred CCeEEE-ECCCCCCHHHHHHHHHhhcCC-CCCEEEEecccc
Confidence 566777 588899999999999998877 566788877543
No 488
>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}
Probab=88.27 E-value=0.58 Score=35.12 Aligned_cols=36 Identities=25% Similarity=0.206 Sum_probs=30.7
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~ 72 (207)
+|++.|+++.+|.|+ .+|..|++ .|.+|+++|.+..
T Consensus 7 ~k~~lVTGas~gIG~-----aia~~l~~-~G~~V~~~~r~~~ 42 (257)
T 3tpc_A 7 SRVFIVTGASSGLGA-----AVTRMLAQ-EGATVLGLDLKPP 42 (257)
T ss_dssp TCEEEEESTTSHHHH-----HHHHHHHH-TTCEEEEEESSCC
T ss_pred CCEEEEeCCCCHHHH-----HHHHHHHH-CCCEEEEEeCChH
Confidence 689999999998886 57888889 9999999987653
No 489
>3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0
Probab=88.25 E-value=0.4 Score=35.72 Aligned_cols=39 Identities=21% Similarity=0.232 Sum_probs=31.3
Q ss_pred cCCCCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCC
Q 028600 27 IDGVKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (207)
Q Consensus 27 ~~~~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~ 71 (207)
.....|++.|+++.+|.|+ .+|..|++ .|.+|++++-+.
T Consensus 10 ~~~~~k~vlVTGas~gIG~-----~~a~~l~~-~G~~V~~~~r~~ 48 (249)
T 3f9i_A 10 IDLTGKTSLITGASSGIGS-----AIARLLHK-LGSKVIISGSNE 48 (249)
T ss_dssp CCCTTCEEEETTTTSHHHH-----HHHHHHHH-TTCEEEEEESCH
T ss_pred ccCCCCEEEEECCCChHHH-----HHHHHHHH-CCCEEEEEcCCH
Confidence 3445889999999988775 67788888 999999998653
No 490
>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0
Probab=88.21 E-value=0.44 Score=36.32 Aligned_cols=37 Identities=30% Similarity=0.322 Sum_probs=31.2
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCC
Q 028600 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (207)
Q Consensus 30 ~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~ 72 (207)
.+|++.|+++.+|.|+ .+|..|++ .|.+|+++|.+..
T Consensus 9 ~gk~vlVTGas~gIG~-----~ia~~l~~-~G~~V~~~~~~~~ 45 (287)
T 3pxx_A 9 QDKVVLVTGGARGQGR-----SHAVKLAE-EGADIILFDICHD 45 (287)
T ss_dssp TTCEEEEETTTSHHHH-----HHHHHHHH-TTCEEEEEECCSC
T ss_pred CCCEEEEeCCCChHHH-----HHHHHHHH-CCCeEEEEccccc
Confidence 3689999999998876 68888999 9999999987643
No 491
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=88.19 E-value=0.45 Score=35.81 Aligned_cols=29 Identities=24% Similarity=0.173 Sum_probs=22.2
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeE
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKV 64 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~V 64 (207)
|++|+++ ++.|+||||++..|+.. .|.++
T Consensus 1 m~~i~lt-G~~~sGK~tv~~~l~~~----~g~~~ 29 (241)
T 1dek_A 1 MKLIFLS-GVKRSGKDTTADFIMSN----YSAVK 29 (241)
T ss_dssp CEEEEEE-CCTTSSHHHHHHHHHHH----SCEEE
T ss_pred CeEEEEE-CCCCCCHHHHHHHHHHh----cCCeE
Confidence 3688886 68999999999888653 46554
No 492
>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}
Probab=88.18 E-value=0.51 Score=35.41 Aligned_cols=35 Identities=17% Similarity=0.116 Sum_probs=30.0
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~ 71 (207)
+|++.|+++.+|.|+ .+|..|++ .|.+|+++|-+.
T Consensus 7 ~k~vlVTGas~GIG~-----aia~~l~~-~G~~V~~~~r~~ 41 (252)
T 3h7a_A 7 NATVAVIGAGDYIGA-----EIAKKFAA-EGFTVFAGRRNG 41 (252)
T ss_dssp SCEEEEECCSSHHHH-----HHHHHHHH-TTCEEEEEESSG
T ss_pred CCEEEEECCCchHHH-----HHHHHHHH-CCCEEEEEeCCH
Confidence 689999999988875 67888889 999999998764
No 493
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=88.15 E-value=0.3 Score=35.96 Aligned_cols=23 Identities=17% Similarity=0.300 Sum_probs=19.6
Q ss_pred EEEEEeCCCCCcHHHHHHHHHHHH
Q 028600 33 VIAVASGKGGVGKSTTAVNLAVAL 56 (207)
Q Consensus 33 ~I~v~s~kgG~GkTt~a~~LA~~l 56 (207)
-+.+ .+.+|+||||++..||..+
T Consensus 60 ~ili-~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 60 CLVF-CGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp EEEE-ESCGGGCHHHHHHHHHHHH
T ss_pred EEEE-ECCCCCCHHHHHHHHHHHh
Confidence 4555 6999999999999999976
No 494
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=88.10 E-value=0.33 Score=35.75 Aligned_cols=25 Identities=28% Similarity=0.381 Sum_probs=21.4
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHH
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVAL 56 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~l 56 (207)
+++++++ +..|+||||+.-.|+..+
T Consensus 23 G~~~~lv-GpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 23 IYPLVIC-GPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCEEEE-CSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEE-CCCCCCHHHHHHHHHhhC
Confidence 6788885 788999999999998866
No 495
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=88.07 E-value=0.7 Score=42.49 Aligned_cols=40 Identities=20% Similarity=0.331 Sum_probs=29.7
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHH--HHHhCCCeEEEEecCC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVA--LASKCQLKVGLLDADV 71 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~--la~~~g~~VlliD~d~ 71 (207)
.++|+| .+.||+||||+|..++.. ....-...++.++++.
T Consensus 150 ~RVV~I-vGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~ 191 (1221)
T 1vt4_I 150 AKNVLI-DGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKN 191 (1221)
T ss_dssp SCEEEE-CCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCC
T ss_pred CeEEEE-EcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCC
Confidence 577887 588999999999999853 2332455688888754
No 496
>3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A
Probab=88.07 E-value=0.48 Score=35.53 Aligned_cols=35 Identities=26% Similarity=0.390 Sum_probs=29.8
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~ 71 (207)
+|++.|+++.+|.|+ .+|..|++ .|.+|+++|-+.
T Consensus 12 ~k~vlVTGas~gIG~-----aia~~l~~-~G~~V~~~~r~~ 46 (252)
T 3f1l_A 12 DRIILVTGASDGIGR-----EAAMTYAR-YGATVILLGRNE 46 (252)
T ss_dssp TCEEEEESTTSHHHH-----HHHHHHHH-TTCEEEEEESCH
T ss_pred CCEEEEeCCCChHHH-----HHHHHHHH-CCCEEEEEeCCH
Confidence 689999999998886 57888889 999999998653
No 497
>3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti}
Probab=88.07 E-value=0.47 Score=36.34 Aligned_cols=36 Identities=28% Similarity=0.394 Sum_probs=30.0
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCC
Q 028600 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (207)
Q Consensus 30 ~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~ 71 (207)
.+|++.|+++.+|.|+ .+|..|++ .|.+|+++|-+.
T Consensus 27 ~~k~~lVTGas~GIG~-----aia~~la~-~G~~V~~~~r~~ 62 (283)
T 3v8b_A 27 PSPVALITGAGSGIGR-----ATALALAA-DGVTVGALGRTR 62 (283)
T ss_dssp CCCEEEEESCSSHHHH-----HHHHHHHH-TTCEEEEEESSH
T ss_pred CCCEEEEECCCCHHHH-----HHHHHHHH-CCCEEEEEeCCH
Confidence 3689999999998875 56788889 999999998653
No 498
>3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp}
Probab=88.06 E-value=0.47 Score=36.04 Aligned_cols=37 Identities=22% Similarity=0.162 Sum_probs=31.3
Q ss_pred CCeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCCC
Q 028600 30 VKDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADVY 72 (207)
Q Consensus 30 ~~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~~ 72 (207)
.+|++.|+++.+|.|+ .+|..|++ .|.+|+++|.+..
T Consensus 12 ~gk~vlVTGas~gIG~-----~ia~~l~~-~G~~V~~~~r~~~ 48 (278)
T 3sx2_A 12 TGKVAFITGAARGQGR-----AHAVRLAA-DGADIIAVDLCDQ 48 (278)
T ss_dssp TTCEEEEESTTSHHHH-----HHHHHHHH-TTCEEEEEECCSC
T ss_pred CCCEEEEECCCChHHH-----HHHHHHHH-CCCeEEEEecccc
Confidence 3789999999999886 57888889 9999999988743
No 499
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=88.05 E-value=0.49 Score=36.79 Aligned_cols=33 Identities=24% Similarity=0.319 Sum_probs=25.6
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecC
Q 028600 34 IAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDAD 70 (207)
Q Consensus 34 I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d 70 (207)
+.+.++..|+|||+++..+|.. .+.+++.+++.
T Consensus 50 ~~L~~G~~G~GKT~la~~la~~----l~~~~~~i~~~ 82 (324)
T 3u61_B 50 IILHSPSPGTGKTTVAKALCHD----VNADMMFVNGS 82 (324)
T ss_dssp EEEECSSTTSSHHHHHHHHHHH----TTEEEEEEETT
T ss_pred EEEeeCcCCCCHHHHHHHHHHH----hCCCEEEEccc
Confidence 4555888999999999988764 46688888753
No 500
>1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2
Probab=88.00 E-value=0.44 Score=35.74 Aligned_cols=35 Identities=29% Similarity=0.405 Sum_probs=29.4
Q ss_pred CeEEEEEeCCCCCcHHHHHHHHHHHHHHhCCCeEEEEecCC
Q 028600 31 KDVIAVASGKGGVGKSTTAVNLAVALASKCQLKVGLLDADV 71 (207)
Q Consensus 31 ~k~I~v~s~kgG~GkTt~a~~LA~~la~~~g~~VlliD~d~ 71 (207)
+|++.|+++.||.|+ .+|..|++ .|.+|.+++-+.
T Consensus 2 ~k~vlVTGas~gIG~-----~ia~~l~~-~G~~V~~~~r~~ 36 (256)
T 1geg_A 2 KKVALVTGAGQGIGK-----AIALRLVK-DGFAVAIADYND 36 (256)
T ss_dssp CCEEEEETTTSHHHH-----HHHHHHHH-TTCEEEEEESCH
T ss_pred CCEEEEECCCChHHH-----HHHHHHHH-CCCEEEEEeCCH
Confidence 578999999998886 57888999 999999997653
Done!