Query 028601
Match_columns 207
No_of_seqs 77 out of 79
Neff 2.5
Searched_HMMs 46136
Date Fri Mar 29 14:03:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028601.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028601hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF11460 DUF3007: Protein of u 100.0 3.8E-51 8.3E-56 318.8 7.4 97 98-195 1-104 (104)
2 PF14163 SieB: Superinfection 94.7 0.08 1.7E-06 42.0 5.5 74 120-196 19-94 (151)
3 PF04156 IncA: IncA protein; 93.8 0.13 2.8E-06 41.3 5.0 76 119-195 26-106 (191)
4 PF12576 DUF3754: Protein of u 88.4 0.42 9.1E-06 38.4 2.8 70 96-173 57-127 (141)
5 PF06305 DUF1049: Protein of u 86.4 0.62 1.3E-05 31.9 2.3 25 129-153 18-42 (68)
6 PF06518 DUF1104: Protein of u 86.0 1.6 3.4E-05 33.9 4.6 40 158-198 35-77 (93)
7 PF03250 Tropomodulin: Tropomo 85.8 0.64 1.4E-05 39.2 2.5 36 160-195 3-38 (147)
8 PF08621 RPAP1_N: RPAP1-like, 83.4 1.5 3.3E-05 30.5 3.1 22 174-195 8-29 (49)
9 PF04120 Iron_permease: Low af 82.4 8 0.00017 31.8 7.4 48 154-201 62-115 (132)
10 PF13618 Gluconate_2-dh3: Gluc 77.8 2.2 4.7E-05 32.4 2.6 28 171-198 61-88 (131)
11 PRK11864 2-ketoisovalerate fer 74.8 1.8 3.9E-05 39.3 1.7 46 151-196 233-288 (300)
12 PTZ00432 falcilysin; Provision 74.2 8.5 0.00018 40.2 6.5 43 156-198 571-615 (1119)
13 TIGR03142 cytochro_ccmI cytoch 73.6 4.3 9.4E-05 31.4 3.3 16 180-195 56-71 (117)
14 TIGR03348 VI_IcmF type VI secr 73.3 5.4 0.00012 41.6 4.9 84 107-196 3-93 (1169)
15 PF06295 DUF1043: Protein of u 73.2 2.7 5.9E-05 33.3 2.2 20 137-159 4-23 (128)
16 PRK11677 hypothetical protein; 73.2 5 0.00011 33.0 3.8 16 137-152 8-23 (134)
17 PRK03557 zinc transporter ZitB 70.3 7.2 0.00016 34.4 4.4 33 92-124 77-113 (312)
18 TIGR01297 CDF cation diffusion 69.9 15 0.00032 30.5 5.9 79 92-170 48-134 (268)
19 PRK11380 hypothetical protein; 68.4 7.1 0.00015 37.0 4.1 34 151-190 89-122 (353)
20 PF12666 PrgI: PrgI family pro 66.4 12 0.00027 27.2 4.3 34 91-125 10-44 (93)
21 PRK00888 ftsB cell division pr 66.4 8.5 0.00018 29.9 3.6 51 145-198 12-62 (105)
22 PF07946 DUF1682: Protein of u 65.4 15 0.00032 33.0 5.3 16 176-191 297-312 (321)
23 PRK03573 transcriptional regul 64.9 29 0.00063 26.5 6.3 100 94-195 25-132 (144)
24 PF06814 Lung_7-TM_R: Lung sev 63.4 10 0.00023 32.8 3.9 77 99-179 150-232 (295)
25 PF04977 DivIC: Septum formati 63.4 7 0.00015 26.9 2.4 36 157-195 14-49 (80)
26 PF11003 DUF2842: Protein of u 63.0 7.7 0.00017 28.1 2.6 45 105-149 3-49 (62)
27 PRK11865 pyruvate ferredoxin o 62.8 6 0.00013 36.0 2.5 45 151-197 237-292 (299)
28 PF11304 DUF3106: Protein of u 62.7 17 0.00037 28.2 4.6 22 174-195 34-55 (107)
29 KOG2019 Metalloendoprotease HM 61.3 16 0.00034 38.4 5.3 39 157-195 493-531 (998)
30 PF05915 DUF872: Eukaryotic pr 61.3 22 0.00047 28.4 5.1 45 101-148 41-88 (115)
31 PF12597 DUF3767: Protein of u 60.5 27 0.00059 27.9 5.5 51 125-188 62-112 (118)
32 PF06518 DUF1104: Protein of u 60.2 7.2 0.00016 30.3 2.2 31 158-189 58-91 (93)
33 PRK11091 aerobic respiration c 59.5 11 0.00025 35.8 3.8 11 143-153 64-74 (779)
34 TIGR00219 mreC rod shape-deter 56.8 6.2 0.00013 35.0 1.5 30 170-200 74-103 (283)
35 TIGR02698 CopY_TcrY copper tra 54.9 47 0.001 26.2 6.0 30 172-201 91-122 (130)
36 PRK11462 putative transporter; 54.7 35 0.00076 30.9 5.9 23 176-198 425-447 (460)
37 COG0099 RpsM Ribosomal protein 54.7 12 0.00027 30.8 2.7 22 174-195 41-62 (121)
38 PF07226 DUF1422: Protein of u 53.8 19 0.00041 29.6 3.7 45 104-150 65-109 (117)
39 PRK10236 hypothetical protein; 53.3 15 0.00033 33.1 3.3 26 171-196 119-144 (237)
40 PF08451 A_deaminase_N: Adenos 53.1 16 0.00035 28.1 3.1 36 153-188 14-52 (96)
41 COG1422 Predicted membrane pro 52.5 8.7 0.00019 33.9 1.7 53 137-193 49-107 (201)
42 PF15372 DUF4600: Domain of un 52.2 15 0.00033 30.4 2.9 26 176-201 46-71 (129)
43 PF01956 DUF106: Integral memb 49.8 9.4 0.0002 30.6 1.4 54 145-199 22-84 (168)
44 PF03457 HA: Helicase associat 49.2 24 0.00052 24.2 3.2 22 163-191 43-64 (68)
45 PF14143 YrhC: YrhC-like prote 48.3 33 0.00071 25.9 3.9 43 105-148 12-56 (72)
46 cd01390 HMGB-UBF_HMG-box HMGB- 47.8 77 0.0017 20.7 5.5 28 171-198 32-59 (66)
47 PF08172 CASP_C: CASP C termin 47.7 28 0.0006 30.9 4.1 35 163-198 85-121 (248)
48 PLN03094 Substrate binding sub 46.4 28 0.00062 32.7 4.1 26 95-120 75-100 (370)
49 PF10439 Bacteriocin_IIc: Bact 46.2 12 0.00027 26.5 1.4 14 176-189 3-16 (65)
50 PF15361 RIC3: Resistance to i 46.1 6.7 0.00014 32.4 -0.0 23 166-189 128-150 (152)
51 PRK09509 fieF ferrous iron eff 45.3 42 0.00091 29.2 4.7 14 92-105 69-82 (299)
52 PF00505 HMG_box: HMG (high mo 45.1 76 0.0016 21.0 5.0 28 171-198 32-59 (69)
53 PRK11056 hypothetical protein; 45.0 35 0.00076 28.2 4.0 45 104-150 65-109 (120)
54 PF12768 Rax2: Cortical protei 44.8 5.7 0.00012 35.6 -0.6 17 97-114 223-239 (281)
55 PF07047 OPA3: Optic atrophy 3 44.7 22 0.00048 28.4 2.8 27 171-198 107-133 (134)
56 PF03965 Penicillinase_R: Peni 44.4 73 0.0016 24.0 5.4 46 150-195 59-115 (115)
57 cd00084 HMG-box High Mobility 44.1 86 0.0019 20.2 5.5 29 171-199 32-60 (66)
58 cd03381 PAP2_glucose_6_phospha 44.0 26 0.00057 30.8 3.3 32 99-130 160-191 (235)
59 PF10550 Toxin_36: Conantokin- 44.0 28 0.0006 19.7 2.2 14 183-196 2-15 (15)
60 PF12072 DUF3552: Domain of un 44.0 13 0.00029 31.1 1.4 12 143-154 10-21 (201)
61 PF07895 DUF1673: Protein of u 43.9 41 0.00089 28.8 4.4 53 101-171 57-109 (205)
62 KOG1962 B-cell receptor-associ 43.0 39 0.00085 30.0 4.2 45 155-199 112-173 (216)
63 COG1026 Predicted Zn-dependent 42.8 63 0.0014 34.5 6.3 49 151-199 450-498 (978)
64 PF04855 SNF5: SNF5 / SMARCB1 42.8 19 0.00042 31.8 2.3 26 171-196 217-242 (244)
65 PF05961 Chordopox_A13L: Chord 42.5 25 0.00054 26.6 2.6 21 101-121 3-23 (68)
66 PRK09706 transcriptional repre 42.5 47 0.001 25.6 4.2 25 171-195 89-113 (135)
67 smart00398 HMG high mobility g 40.7 1E+02 0.0022 20.0 5.6 28 171-198 33-60 (70)
68 PRK00306 50S ribosomal protein 40.7 37 0.00079 24.2 3.1 22 176-197 4-25 (66)
69 PF13902 R3H-assoc: R3H-associ 40.2 51 0.0011 25.8 4.1 39 162-201 63-101 (131)
70 PTZ00246 proteasome subunit al 39.3 24 0.00051 30.1 2.3 23 178-200 226-248 (253)
71 PF09991 DUF2232: Predicted me 39.0 1.6E+02 0.0034 24.4 7.0 17 180-196 137-153 (290)
72 PRK09848 glucuronide transport 38.0 1.6E+02 0.0035 25.8 7.3 19 180-198 428-446 (448)
73 KOG2224 Uncharacterized conser 37.6 35 0.00076 34.5 3.4 42 151-193 447-495 (781)
74 PF09972 DUF2207: Predicted me 37.1 42 0.00091 29.7 3.5 16 103-118 400-415 (511)
75 PF01638 HxlR: HxlR-like helix 36.4 19 0.00041 26.2 1.1 41 147-196 6-46 (90)
76 PF11239 DUF3040: Protein of u 36.3 35 0.00076 24.9 2.5 16 180-196 2-17 (82)
77 PF00645 zf-PARP: Poly(ADP-rib 35.4 21 0.00045 25.5 1.1 18 177-194 65-82 (82)
78 PRK13453 F0F1 ATP synthase sub 35.1 50 0.0011 26.9 3.5 47 110-170 7-54 (173)
79 COG2863 Cytochrome c553 [Energ 35.0 60 0.0013 26.5 3.8 35 163-197 62-101 (121)
80 COG1896 Predicted hydrolases o 34.4 45 0.00097 28.3 3.2 40 154-195 75-123 (193)
81 KOG4171 Adenylate/guanylate ki 34.3 39 0.00084 34.6 3.2 28 171-199 385-412 (671)
82 PRK12585 putative monovalent c 34.1 62 0.0014 28.7 4.1 16 162-177 103-118 (197)
83 PRK06474 hypothetical protein; 34.0 43 0.00094 27.7 3.0 15 181-195 136-150 (178)
84 PRK13729 conjugal transfer pil 33.4 39 0.00084 33.2 3.0 28 155-182 57-89 (475)
85 PF15188 CCDC-167: Coiled-coil 33.4 68 0.0015 24.8 3.7 38 167-204 19-56 (85)
86 smart00347 HTH_MARR helix_turn 33.3 1E+02 0.0022 20.9 4.3 88 94-186 4-101 (101)
87 cd00427 Ribosomal_L29_HIP Ribo 33.2 48 0.001 23.0 2.6 20 178-197 3-22 (57)
88 PRK14748 kdpF potassium-transp 32.7 51 0.0011 21.5 2.5 25 98-122 1-25 (29)
89 PF06945 DUF1289: Protein of u 32.7 64 0.0014 22.1 3.2 23 176-198 28-50 (51)
90 TIGR00012 L29 ribosomal protei 32.6 51 0.0011 22.8 2.7 19 178-196 2-20 (55)
91 PLN02220 delta-9 acyl-lipid de 32.4 74 0.0016 29.1 4.4 21 87-107 14-37 (299)
92 PF09928 DUF2160: Predicted sm 32.2 94 0.002 24.5 4.4 33 93-130 37-69 (88)
93 PF01099 Uteroglobin: Uteroglo 31.8 81 0.0018 22.3 3.7 34 161-194 18-59 (67)
94 PF13858 DUF4199: Protein of u 31.7 1.4E+02 0.0029 23.2 5.2 18 147-164 46-65 (163)
95 COG5478 Predicted small integr 31.7 1.1E+02 0.0024 26.0 4.9 19 179-197 98-116 (141)
96 PRK05179 rpsM 30S ribosomal pr 31.2 35 0.00076 27.4 1.9 21 175-195 42-62 (122)
97 KOG2568 Predicted membrane pro 31.2 55 0.0012 32.5 3.6 80 99-179 305-385 (518)
98 COG0255 RpmC Ribosomal protein 30.9 62 0.0013 24.1 3.0 21 176-196 6-26 (69)
99 PHA03049 IMV membrane protein; 30.0 53 0.0011 24.9 2.6 20 101-120 3-22 (68)
100 PF10742 DUF2555: Protein of u 30.0 46 0.001 24.4 2.2 23 175-197 3-25 (57)
101 PF10661 EssA: WXG100 protein 29.9 55 0.0012 27.0 2.9 18 106-123 125-142 (145)
102 CHL00137 rps13 ribosomal prote 29.7 37 0.0008 27.3 1.8 21 175-195 42-62 (122)
103 COG2155 Uncharacterized conser 29.6 33 0.00071 26.5 1.4 58 102-159 5-68 (79)
104 CHL00154 rpl29 ribosomal prote 29.5 68 0.0015 23.4 3.0 21 177-197 8-28 (67)
105 PHA02698 hypothetical protein; 29.4 76 0.0016 25.0 3.4 27 170-196 55-81 (89)
106 cd07321 Extradiol_Dioxygenase_ 29.2 85 0.0018 23.1 3.5 25 165-191 18-45 (77)
107 PF03047 ComC: COMC family; I 29.2 18 0.00039 23.5 0.0 15 176-190 9-23 (32)
108 PF02096 60KD_IMP: 60Kd inner 29.2 41 0.00089 27.3 2.0 44 152-195 13-59 (198)
109 TIGR00787 dctP tripartite ATP- 28.8 64 0.0014 27.0 3.2 21 175-195 213-233 (257)
110 PF06738 DUF1212: Protein of u 28.8 1.5E+02 0.0033 23.8 5.2 77 121-198 23-99 (193)
111 PF13239 2TM: 2TM domain 28.7 1.7E+02 0.0037 21.1 5.0 71 99-180 10-83 (83)
112 PF09682 Holin_LLH: Phage holi 28.4 69 0.0015 24.6 3.1 27 144-170 20-46 (108)
113 cd06171 Sigma70_r4 Sigma70, re 28.4 79 0.0017 18.7 2.8 19 172-190 2-20 (55)
114 COG1230 CzcD Co/Zn/Cd efflux s 28.3 72 0.0016 29.3 3.6 74 94-168 82-165 (296)
115 PF07256 DUF1435: Protein of u 28.3 64 0.0014 24.9 2.8 47 107-170 9-56 (78)
116 TIGR03631 bact_S13 30S ribosom 28.3 42 0.00092 26.5 1.9 20 176-195 41-60 (113)
117 PF00831 Ribosomal_L29: Riboso 28.2 53 0.0011 22.9 2.2 20 177-196 3-22 (58)
118 PF10061 DUF2299: Uncharacteri 28.1 65 0.0014 26.3 3.0 26 172-197 58-83 (138)
119 PRK14549 50S ribosomal protein 28.1 77 0.0017 23.1 3.1 22 176-197 7-28 (69)
120 PF02899 Phage_int_SAM_1: Phag 28.0 74 0.0016 21.4 2.8 37 161-197 21-60 (84)
121 PF11304 DUF3106: Protein of u 27.9 95 0.0021 24.1 3.8 18 177-194 73-90 (107)
122 PF02697 DUF217: Uncharacteriz 27.8 2.1E+02 0.0045 21.2 5.3 42 157-198 19-65 (71)
123 PF08285 DPM3: Dolichol-phosph 27.8 48 0.001 25.6 2.1 84 98-202 1-86 (91)
124 PF05529 Bap31: B-cell recepto 27.7 54 0.0012 26.9 2.5 13 183-195 160-172 (192)
125 PF01545 Cation_efflux: Cation 27.4 89 0.0019 26.0 3.8 31 92-122 57-88 (284)
126 PRK00461 rpmC 50S ribosomal pr 27.3 74 0.0016 24.5 3.0 22 176-197 3-24 (87)
127 TIGR02408 ectoine_ThpD ectoine 27.2 32 0.00069 29.8 1.1 35 163-197 19-53 (277)
128 PLN02435 probable UDP-N-acetyl 27.1 79 0.0017 31.0 3.8 31 165-195 28-58 (493)
129 TIGR00439 ftsX putative protei 26.9 62 0.0013 29.0 2.9 16 137-152 282-297 (309)
130 PF11326 DUF3128: Protein of u 26.7 1.5E+02 0.0034 21.7 4.5 45 162-206 36-80 (84)
131 PF13687 DUF4153: Domain of un 26.6 50 0.0011 27.6 2.1 67 95-171 150-216 (217)
132 PF09012 FeoC: FeoC like trans 26.5 36 0.00078 23.7 1.1 33 162-195 8-40 (69)
133 smart00529 HTH_DTXR Helix-turn 26.4 2.3E+02 0.0051 19.9 5.9 16 180-195 66-81 (96)
134 PF14261 DUF4351: Domain of un 26.4 98 0.0021 21.9 3.3 20 173-192 26-45 (59)
135 PTZ00134 40S ribosomal protein 26.2 36 0.00079 28.6 1.3 21 175-195 55-75 (154)
136 COG4858 Uncharacterized membra 26.2 53 0.0012 29.6 2.3 38 118-155 146-183 (226)
137 PRK05457 heat shock protein Ht 26.1 3.3E+02 0.0071 24.2 7.2 35 162-198 211-245 (284)
138 PRK10878 hypothetical protein; 26.0 53 0.0012 24.4 2.0 27 172-198 10-36 (72)
139 COG0053 MMT1 Predicted Co/Zn/C 25.7 1E+02 0.0022 27.6 4.1 67 92-158 71-143 (304)
140 PHA02592 52 DNA topisomerase I 25.6 74 0.0016 30.6 3.3 29 171-199 389-417 (439)
141 TIGR03766 conserved hypothetic 25.5 77 0.0017 29.9 3.4 32 161-192 330-361 (483)
142 KOG0182 20S proteasome, regula 25.4 1.7E+02 0.0037 26.8 5.4 50 145-196 62-124 (246)
143 KOG3248 Transcription factor T 25.3 1.2E+02 0.0025 29.6 4.5 38 160-197 200-249 (421)
144 PF02686 Glu-tRNAGln: Glu-tRNA 25.2 66 0.0014 22.1 2.2 15 181-195 1-15 (72)
145 PRK04654 sec-independent trans 25.2 71 0.0015 28.6 2.9 32 162-193 35-66 (214)
146 PRK13922 rod shape-determining 25.1 1.7E+02 0.0036 25.2 5.1 25 171-195 78-104 (276)
147 TIGR03798 ocin_TIGR03798 bacte 25.0 1.1E+02 0.0024 21.3 3.3 27 164-190 2-34 (64)
148 PF10083 DUF2321: Uncharacteri 24.9 85 0.0018 27.0 3.2 23 174-196 91-113 (158)
149 PF04695 Pex14_N: Peroxisomal 24.9 74 0.0016 25.4 2.8 26 170-197 26-51 (136)
150 COG2938 Uncharacterized conser 24.9 59 0.0013 25.5 2.1 29 171-199 34-62 (94)
151 cd01389 MATA_HMG-box MATA_HMG- 24.8 1.4E+02 0.003 20.9 3.9 28 171-198 33-60 (77)
152 cd02000 TPP_E1_PDC_ADC_BCADC T 24.8 97 0.0021 27.1 3.7 58 142-199 219-288 (293)
153 PF09677 TrbI_Ftype: Type-F co 24.6 70 0.0015 25.3 2.5 14 179-192 52-65 (111)
154 TIGR02209 ftsL_broad cell divi 24.5 2.6E+02 0.0056 19.7 5.4 25 170-195 32-56 (85)
155 PRK02463 OxaA-like protein pre 24.2 5.2E+02 0.011 23.7 8.3 44 152-195 70-125 (307)
156 TIGR00782 ccoP cytochrome c ox 24.2 2.4E+02 0.0051 24.8 5.9 17 103-119 32-48 (285)
157 cd01388 SOX-TCF_HMG-box SOX-TC 24.1 1.5E+02 0.0033 20.5 3.9 28 172-199 34-61 (72)
158 TIGR02838 spore_V_AC stage V s 23.9 88 0.0019 26.3 3.1 51 91-141 11-62 (141)
159 PF13807 GNVR: G-rich domain o 23.7 1.5E+02 0.0032 21.3 3.9 36 87-122 45-80 (82)
160 PRK05382 chorismate synthase; 23.5 1.5E+02 0.0032 28.2 4.8 51 147-199 144-194 (359)
161 PF11833 DUF3353: Protein of u 23.5 1.2E+02 0.0025 26.1 3.8 51 99-150 138-191 (194)
162 PRK10870 transcriptional repre 23.4 2.1E+02 0.0046 23.3 5.2 71 121-195 78-157 (176)
163 PRK11512 DNA-binding transcrip 23.3 2.4E+02 0.0052 21.7 5.3 93 94-195 34-141 (144)
164 cd00633 Secretoglobin Secretog 23.3 1.9E+02 0.0041 20.3 4.3 35 160-194 17-59 (67)
165 PRK14471 F0F1 ATP synthase sub 23.2 1.1E+02 0.0025 24.3 3.5 35 132-170 10-44 (164)
166 PTZ00459 mucin-associated surf 23.2 39 0.00085 30.4 1.0 13 137-149 9-21 (291)
167 PF10953 DUF2754: Protein of u 23.2 53 0.0011 24.9 1.5 46 103-154 15-60 (70)
168 PF10666 Phage_Gp14: Phage pro 23.1 1.7E+02 0.0036 24.9 4.6 47 149-195 21-76 (140)
169 PF04277 OAD_gamma: Oxaloaceta 23.1 27 0.00057 24.7 -0.1 17 181-197 61-77 (79)
170 smart00096 UTG Uteroglobin. 23.0 2E+02 0.0044 21.5 4.5 35 161-195 20-62 (69)
171 PF02468 PsbN: Photosystem II 23.0 75 0.0016 22.1 2.1 25 101-125 4-28 (43)
172 TIGR02530 flg_new flagellar op 22.8 1.1E+02 0.0025 24.2 3.4 23 175-197 22-48 (96)
173 PF03937 Sdh5: Flavinator of s 22.7 82 0.0018 22.8 2.4 28 171-198 22-49 (74)
174 PRK09814 beta-1,6-galactofuran 22.6 1.8E+02 0.004 25.1 4.9 47 157-203 266-319 (333)
175 COG4653 Predicted phage phi-C3 22.5 86 0.0019 30.7 3.1 26 171-197 30-55 (422)
176 PRK00247 putative inner membra 22.4 3.1E+02 0.0067 26.6 6.8 63 123-195 23-93 (429)
177 PF09446 VMA21: VMA21-like dom 22.2 87 0.0019 22.5 2.4 52 102-154 7-64 (66)
178 PF13148 DUF3987: Protein of u 22.1 1.2E+02 0.0027 26.3 3.8 12 162-173 74-85 (378)
179 COG3771 Predicted membrane pro 22.0 27 0.00058 28.0 -0.3 40 132-171 42-83 (97)
180 cd04748 Commd COMM_Domain, a f 21.9 93 0.002 22.5 2.6 19 180-198 67-85 (87)
181 PF08784 RPA_C: Replication pr 21.9 1.1E+02 0.0024 22.5 3.0 25 171-196 68-92 (102)
182 PRK10429 melibiose:sodium symp 21.8 3.2E+02 0.0068 24.6 6.4 9 120-128 390-398 (473)
183 PRK01381 Trp operon repressor; 21.8 1.3E+02 0.0028 24.0 3.5 25 170-194 21-46 (99)
184 PF07037 DUF1323: Putative tra 21.8 63 0.0014 26.8 1.8 43 154-196 66-108 (122)
185 PF07271 Cytadhesin_P30: Cytad 21.8 1.3E+02 0.0029 28.0 4.0 8 139-146 84-91 (279)
186 MTH00046 CYTB cytochrome b; Va 21.8 1.2E+02 0.0025 28.6 3.8 45 73-117 189-235 (355)
187 PRK02944 OxaA-like protein pre 21.7 3.6E+02 0.0078 23.7 6.6 44 152-195 69-119 (255)
188 PF12616 DUF3775: Protein of u 21.7 1.1E+02 0.0025 22.9 3.0 21 171-191 3-23 (75)
189 COG3923 PriC Primosomal replic 21.6 1.4E+02 0.0029 26.3 3.9 37 164-200 113-156 (175)
190 PRK04156 gltX glutamyl-tRNA sy 21.5 1.1E+02 0.0024 30.5 3.7 21 173-193 53-73 (567)
191 PF13623 SurA_N_2: SurA N-term 21.5 3.3E+02 0.0071 22.2 5.9 33 153-185 42-77 (145)
192 PF08920 SF3b1: Splicing facto 21.5 61 0.0013 27.0 1.7 27 164-190 69-96 (144)
193 PRK11901 hypothetical protein; 21.4 1.1E+02 0.0024 28.9 3.5 21 58-81 6-26 (327)
194 CHL00019 atpF ATP synthase CF0 21.4 1.3E+02 0.0028 24.7 3.6 41 124-171 20-61 (184)
195 COG2177 FtsX Cell division pro 21.3 1E+02 0.0022 28.0 3.2 30 123-152 260-289 (297)
196 PHA01080 hypothetical protein 21.2 48 0.001 25.8 1.0 31 121-151 39-69 (80)
197 KOG1937 Uncharacterized conser 21.2 82 0.0018 31.5 2.7 22 157-178 307-328 (521)
198 PF14164 YqzH: YqzH-like prote 21.1 1.1E+02 0.0023 22.9 2.8 23 179-201 24-46 (64)
199 PF07835 COX4_pro_2: Bacterial 21.1 68 0.0015 21.9 1.6 14 157-170 6-19 (44)
200 PF06374 NDUF_C2: NADH-ubiquin 21.0 2.2E+02 0.0048 23.2 4.7 23 126-151 47-70 (117)
201 cd06660 Aldo_ket_red Aldo-keto 20.9 97 0.0021 25.6 2.8 43 144-191 240-284 (285)
202 KOG3882 Tetraspanin family int 20.9 1.4E+02 0.0031 24.6 3.8 23 98-120 51-73 (237)
203 PRK13183 psbN photosystem II r 20.9 64 0.0014 22.8 1.5 29 98-126 4-32 (46)
204 PRK08317 hypothetical protein; 20.8 4.1E+02 0.0088 20.6 7.4 71 127-199 153-224 (241)
205 PF03419 Peptidase_U4: Sporula 20.1 97 0.0021 27.1 2.8 50 101-150 86-140 (293)
206 PF13347 MFS_2: MFS/sugar tran 20.0 67 0.0015 28.1 1.7 69 92-162 64-133 (428)
No 1
>PF11460 DUF3007: Protein of unknown function (DUF3007); InterPro: IPR021562 This is a family of uncharacterised proteins found in bacteria and eukaryotes.
Probab=100.00 E-value=3.8e-51 Score=318.81 Aligned_cols=97 Identities=55% Similarity=0.856 Sum_probs=95.5
Q ss_pred ccchhhhhhhHHHHHHHHHHHHhhHHhCCCcccchhHHHHHHHhhhhhheeeeeeeeeecCCccHHHHHHHHHHHH----
Q 028601 98 YTRKDVLLIGVGVTVIGYGLKSGLELFGVDPLQAGNVVEVIVVLGLTLGWVSTYIFRVSNKEMTYAQQLRDYEDKV---- 173 (207)
Q Consensus 98 MtR~DVI~IGlgvfllGg~lY~gLq~~GlD~~~AGiwsQ~lLVlGlvVgWv~SYLfRV~tk~MTY~qQ~kdYE~av---- 173 (207)
|||+|||+||+++|++|+++|++|+++|+|+++||||||++||+|+ |+|++||+|||+||||||||||||||+++
T Consensus 1 MtR~dvl~Iglgv~~~Gg~~Y~~l~~~G~d~~~AGi~sq~~lv~gl-vgW~~sYlfRV~t~~MTy~~Q~k~Ye~a~~~~~ 79 (104)
T PF11460_consen 1 MTRIDVLLIGLGVFLLGGLLYGGLQAAGLDSLSAGIWSQALLVLGL-VGWVSSYLFRVVTGKMTYMQQRKDYEEAVDQLT 79 (104)
T ss_pred CcccceeeecHHHHHHHHHHHHHHHHcCCCchhhhHHHHHHHHHHH-HHHHhHHHhhhccCCCcHHHHHHHHHHHHHHHh
Confidence 8999999999999999999999999999999999999999999986 99999999999999999999999999999
Q ss_pred ---HHHHHhcCCHHHHHHHHHHHHH
Q 028601 174 ---MQKRLEGLTEAELEALIEQVEE 195 (207)
Q Consensus 174 ---LQKRleeLtpEEle~L~aEIE~ 195 (207)
||||||||||||+|+|++||||
T Consensus 80 ~~~lqkRle~l~~eE~~~L~~eiee 104 (104)
T PF11460_consen 80 NEELQKRLEELSPEELEALQAEIEE 104 (104)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHhcC
Confidence 9999999999999999999985
No 2
>PF14163 SieB: Superinfection exclusion protein B
Probab=94.71 E-value=0.08 Score=41.97 Aligned_cols=74 Identities=20% Similarity=0.257 Sum_probs=46.3
Q ss_pred hhHHhCCCcc--cchhHHHHHHHhhhhhheeeeeeeeeecCCccHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 028601 120 GLELFGVDPL--QAGNVVEVIVVLGLTLGWVSTYIFRVSNKEMTYAQQLRDYEDKVMQKRLEGLTEAELEALIEQVEEE 196 (207)
Q Consensus 120 gLq~~GlD~~--~AGiwsQ~lLVlGlvVgWv~SYLfRV~tk~MTY~qQ~kdYE~avLQKRleeLtpEEle~L~aEIE~E 196 (207)
.++.+|+|.+ .-+.|.-.++++ +++.+.+.++...-+.-... +.+.-+.+.++|+++.|||+|++-|-+=+.+.
T Consensus 19 ~~~~l~l~~~~~~y~~~i~~~fl~--s~s~li~~~~~~~~~~~~~~-~~~k~~~~~~~~~l~~Lt~~EkavL~~~~~~~ 94 (151)
T PF14163_consen 19 LLEWLNLDKFEIKYQPWIGLIFLF--SVSYLIAQLLSFIYKEAKDR-YQRKRKKKKIEKKLNSLTPEEKAVLREFYIQG 94 (151)
T ss_pred HHHHhCcchHHHhcchHHHHHHHH--HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHCC
Confidence 3678888874 455666666665 34555555544442222222 33333466788889999999999887766654
No 3
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=93.80 E-value=0.13 Score=41.34 Aligned_cols=76 Identities=21% Similarity=0.188 Sum_probs=35.2
Q ss_pred HhhHHhCCCcccchhHHHHHHHhhhhhheeeeeeeeeecCCccHHHHHHHH-----HHHHHHHHHhcCCHHHHHHHHHHH
Q 028601 119 SGLELFGVDPLQAGNVVEVIVVLGLTLGWVSTYIFRVSNKEMTYAQQLRDY-----EDKVMQKRLEGLTEAELEALIEQV 193 (207)
Q Consensus 119 ~gLq~~GlD~~~AGiwsQ~lLVlGlvVgWv~SYLfRV~tk~MTY~qQ~kdY-----E~avLQKRleeLtpEEle~L~aEI 193 (207)
..+-..|+-+.-++...=+++.+|+++.=.+.|.+-.-...=.+..+.-+. +....++++.+++ +|++.+++.+
T Consensus 26 Lv~~~~~l~~~~s~~lg~~~lAlg~vL~~~g~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~l~~l~-~el~~l~~~~ 104 (191)
T PF04156_consen 26 LVLFISGLGALISFILGIALLALGVVLLSLGLLCLLSKRPVQSVRPQQIEEPRLQGELSELQQQLQQLQ-EELDQLQERI 104 (191)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccchHHHHHhhhhhhhHHhHHHHHHHHH-HHHHHHHHHH
Confidence 344444555555555555555555533333333333323323333333333 4455556665554 4555554444
Q ss_pred HH
Q 028601 194 EE 195 (207)
Q Consensus 194 E~ 195 (207)
.+
T Consensus 105 ~~ 106 (191)
T PF04156_consen 105 QE 106 (191)
T ss_pred HH
Confidence 43
No 4
>PF12576 DUF3754: Protein of unknown function (DUF3754); InterPro: IPR022227 This domain family is found in bacteria, archaea and eukaryotes, and is typically between 135 and 166 amino acids in length. There is a single completely conserved residue P that may be functionally important.
Probab=88.44 E-value=0.42 Score=38.38 Aligned_cols=70 Identities=17% Similarity=0.135 Sum_probs=41.2
Q ss_pred ccccchhhhhhhHHHHHHHHHHHHhhHHhCCCc-ccchhHHHHHHHhhhhhheeeeeeeeeecCCccHHHHHHHHHHHH
Q 028601 96 FGYTRKDVLLIGVGVTVIGYGLKSGLELFGVDP-LQAGNVVEVIVVLGLTLGWVSTYIFRVSNKEMTYAQQLRDYEDKV 173 (207)
Q Consensus 96 FgMtR~DVI~IGlgvfllGg~lY~gLq~~GlD~-~~AGiwsQ~lLVlGlvVgWv~SYLfRV~tk~MTY~qQ~kdYE~av 173 (207)
=.||-.|-+.+++.+.+.|+...+-+.....+. .....+.-+.+ ++=+++|.+|+.+ +|.+++.+|...+
T Consensus 57 v~~~~~D~~~l~~~~vvg~v~~~~~~~~~~~~~~~~~~~~~~~~~-----l~~~~~~~~r~~~---~~~~~~~ry~~~l 127 (141)
T PF12576_consen 57 VRMRPFDRVKLGVSAVVGGVAVFVKLVGMSLLLLSDIFLILILSL-----LSALGGYAFRQYT---GYKNNRARYQLLL 127 (141)
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 478999999988877555544333322222111 11122222222 3334688999985 8999999998543
No 5
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=86.44 E-value=0.62 Score=31.94 Aligned_cols=25 Identities=28% Similarity=0.550 Sum_probs=15.9
Q ss_pred ccchhHHHHHHHhhhhhheeeeeee
Q 028601 129 LQAGNVVEVIVVLGLTLGWVSTYIF 153 (207)
Q Consensus 129 ~~AGiwsQ~lLVlGlvVgWv~SYLf 153 (207)
...+++.=+.+++|+++||+.+...
T Consensus 18 ~pl~l~il~~f~~G~llg~l~~~~~ 42 (68)
T PF06305_consen 18 LPLGLLILIAFLLGALLGWLLSLPS 42 (68)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555556677788888876643
No 6
>PF06518 DUF1104: Protein of unknown function (DUF1104); InterPro: IPR009488 This family consists of several hypothetical proteins of unknown function which appear to be found exclusively in Helicobacter pylori.; PDB: 2XRH_A.
Probab=85.97 E-value=1.6 Score=33.91 Aligned_cols=40 Identities=20% Similarity=0.324 Sum_probs=29.6
Q ss_pred CCccHHHHHHHHH---HHHHHHHHhcCCHHHHHHHHHHHHHHHh
Q 028601 158 KEMTYAQQLRDYE---DKVMQKRLEGLTEAELEALIEQVEEEKR 198 (207)
Q Consensus 158 k~MTY~qQ~kdYE---~avLQKRleeLtpEEle~L~aEIE~Ek~ 198 (207)
+.|++-++ ++|. .+.++|.++.||++|-.+.++||-.+=+
T Consensus 35 ~~m~~~~~-k~f~~~~~~~~~kn~~~ms~~e~~k~~~ev~k~~~ 77 (93)
T PF06518_consen 35 KKMKEKEA-KDFKKQFKEAARKNLSKMSVEERKKRREEVRKALE 77 (93)
T ss_dssp HHS-HHHH-HHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHH
T ss_pred HhCCHHHH-HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
Confidence 45676544 4665 7789999999999999999999977433
No 7
>PF03250 Tropomodulin: Tropomodulin; InterPro: IPR004934 Actin filaments have an intrinsic polarity, each with a fast-growing (barbed) end and a slow-growing (pointed) end. To regulate the dynamics at these ends, capping proteins have evolved that specifically bind to either the barbed or the pointed ends of the filament, where they block the association and dissociation of monomers. Pointed ends, for which actin monomers have significantly lower association and dissociation rate-constants than for barbed, are capped by either the Arp2/3 complex or tropomodulins []. Tropomodulin is a novel tropomyosin regulatory protein that binds to the end of erythrocyte tropomyosin and blocks head-to-tail association of tropomyosin along actin filaments []. Limited proteolysis shows this protein is composed of two domains. The unstructured tropomyosin-binding region at the N terminus has an actin pointed-end-capping activity that is dramatically up-regulated by tropomyosin coating of the actin filament[]. The second region is found near the C terminus. This tropomyosin-independent capping-domain caps pure actin. ; GO: 0005523 tropomyosin binding, 0005856 cytoskeleton
Probab=85.81 E-value=0.64 Score=39.18 Aligned_cols=36 Identities=36% Similarity=0.562 Sum_probs=31.7
Q ss_pred ccHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 028601 160 MTYAQQLRDYEDKVMQKRLEGLTEAELEALIEQVEE 195 (207)
Q Consensus 160 MTY~qQ~kdYE~avLQKRleeLtpEEle~L~aEIE~ 195 (207)
|.|.+-+..|++--...=|..|||||++.|..|+++
T Consensus 3 ~~~~kel~~y~DiDeDelL~~LS~EEL~~L~~el~e 38 (147)
T PF03250_consen 3 LSYRKELEKYEDIDEDELLAKLSPEELEELENELEE 38 (147)
T ss_pred chhhhhhhhcccCCHHHHHHhCCHHHHHHHHHHHHh
Confidence 457788889998888888999999999999988876
No 8
>PF08621 RPAP1_N: RPAP1-like, N-terminal; InterPro: IPR013930 Inhibition of RNA polymerase II-associated protein 1 (RPAP1) synthesis in Saccharomyces cerevisiae (Baker's yeast) results in changes in global gene expression that are similar to those caused by the loss of the RNAPII subunit Rpb11 []. This entry represents the N-terminal region of RPAP-1 that is conserved from yeast to humans.
Probab=83.38 E-value=1.5 Score=30.51 Aligned_cols=22 Identities=27% Similarity=0.376 Sum_probs=19.4
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 028601 174 MQKRLEGLTEAELEALIEQVEE 195 (207)
Q Consensus 174 LQKRleeLtpEEle~L~aEIE~ 195 (207)
=.+||..|||||.++-++||-+
T Consensus 8 N~~rL~~MS~eEI~~er~eL~~ 29 (49)
T PF08621_consen 8 NEARLASMSPEEIEEEREELLE 29 (49)
T ss_pred HHHHHHhCCHHHHHHHHHHHHH
Confidence 3689999999999999999865
No 9
>PF04120 Iron_permease: Low affinity iron permease ; InterPro: IPR007251 Although originally identified as a low-affinity iron(II) permease [, ], Fet4 has since been shown to import several other transition metal ions, including copper [, ] and zinc []. Copper, cobalt, and cadmium inhibit Fet4 [, ]. Fet4 is an integral protein of the plasma membrane [, ]. FET4 is not essential, not even in fet3 fet4 double mutants []. Over expression of FET4 improves growth under alkaline conditions []. Transcription of FET4 is induced by Aft1 in response to low levels of iron [, , ] or by Zap1 in response to low zinc [, ], but not in response to low copper []. When the high-affinity iron permease component Fet3 is deleted, FET4 is induced by the addition of copper, zinc, cobalt, or manganese []. It is also induced under anaerobic conditions [, , ] and repressed by Rox1 in aerobic conditions [, ]. Rox1 attenuates the activation of FET4 by Aft1 or Zap1 []. ; GO: 0055085 transmembrane transport
Probab=82.36 E-value=8 Score=31.76 Aligned_cols=48 Identities=23% Similarity=0.255 Sum_probs=30.9
Q ss_pred eeecCCccHHHHHHHHHHHHHH---H---HHhcCCHHHHHHHHHHHHHHHhccc
Q 028601 154 RVSNKEMTYAQQLRDYEDKVMQ---K---RLEGLTEAELEALIEQVEEEKRRLA 201 (207)
Q Consensus 154 RV~tk~MTY~qQ~kdYE~avLQ---K---RleeLtpEEle~L~aEIE~Ek~~~~ 201 (207)
..-+++..+++.+.|-=-..+. + -+|.|+|+|++++.++.|++..+..
T Consensus 62 n~q~Rd~~al~~KLdeLi~~~~~a~n~li~iE~l~~~el~~~~~~~~~~~~~~~ 115 (132)
T PF04120_consen 62 NTQNRDTKALQAKLDELIRAVKEARNELIDIEDLTEEELEEIRKRYERLAEQAR 115 (132)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHhCCcccCCHHHHHHHHHHHHHHHHHhh
Confidence 3445666666555554333332 1 1588999999999999998655443
No 10
>PF13618 Gluconate_2-dh3: Gluconate 2-dehydrogenase subunit 3
Probab=77.84 E-value=2.2 Score=32.37 Aligned_cols=28 Identities=29% Similarity=0.414 Sum_probs=23.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHh
Q 028601 171 DKVMQKRLEGLTEAELEALIEQVEEEKR 198 (207)
Q Consensus 171 ~avLQKRleeLtpEEle~L~aEIE~Ek~ 198 (207)
...-.|.|.+|+++|+++|++++++.+.
T Consensus 61 ~~~~g~~F~~l~~~~~~~lL~~~~~~~~ 88 (131)
T PF13618_consen 61 QKRYGKSFAELSPAQREALLDALEKSEA 88 (131)
T ss_pred HHHhCCChhhCCHHHHHHHHHHHHhccc
Confidence 3344688999999999999999998654
No 11
>PRK11864 2-ketoisovalerate ferredoxin oxidoreductase subunit beta; Provisional
Probab=74.75 E-value=1.8 Score=39.35 Aligned_cols=46 Identities=26% Similarity=0.424 Sum_probs=33.7
Q ss_pred eeeeeecCCccHHH---------HHHHHHH-HHHHHHHhcCCHHHHHHHHHHHHHH
Q 028601 151 YIFRVSNKEMTYAQ---------QLRDYED-KVMQKRLEGLTEAELEALIEQVEEE 196 (207)
Q Consensus 151 YLfRV~tk~MTY~q---------Q~kdYE~-avLQKRleeLtpEEle~L~aEIE~E 196 (207)
-|||.-.++.+... .++..+| -.+|.||..|.||++++||+++++.
T Consensus 233 plye~~~g~~~~~~~~~~~~~~~~~~pv~~~l~~q~Rf~~L~~~~~~~~q~~vd~~ 288 (300)
T PRK11864 233 PLFEYENGKFKLNSPSKTLLDKKKRKPVEEYLKLQGRFKHLTEEEIKGLQEEIDEM 288 (300)
T ss_pred eEEEEECCEEEEccCCccccccccCCCHHHHHhhccchhcCCHHHHHHHHHHHHHH
Confidence 36777776655543 2334443 3489999999999999999999874
No 12
>PTZ00432 falcilysin; Provisional
Probab=74.15 E-value=8.5 Score=40.17 Aligned_cols=43 Identities=16% Similarity=0.306 Sum_probs=37.5
Q ss_pred ecCCc--cHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Q 028601 156 SNKEM--TYAQQLRDYEDKVMQKRLEGLTEAELEALIEQVEEEKR 198 (207)
Q Consensus 156 ~tk~M--TY~qQ~kdYE~avLQKRleeLtpEEle~L~aEIE~Ek~ 198 (207)
+..+= .|.++++.=|++.|+++.++||+||+++|.++.++-++
T Consensus 571 ~~p~~s~~~~~~~~~~e~~~L~~~~~~Ls~ee~~~i~~~~~~l~~ 615 (1119)
T PTZ00432 571 LEAVESSKYEKEFNKLVKDELKERLSHLTKEQVDEMEKAYEKFKK 615 (1119)
T ss_pred EecCCcccHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 34555 89999999999999999999999999999999988443
No 13
>TIGR03142 cytochro_ccmI cytochrome c-type biogenesis protein CcmI. This TPR repeat-containing protein is the CcmI protein (also called CycH) of c-type cytochrome biogenesis. CcmI is thought to act as an apo-cytochrome c chaperone. This model describes the N-terminal region of the protein, Members of this protein family
Probab=73.63 E-value=4.3 Score=31.37 Aligned_cols=16 Identities=38% Similarity=0.335 Sum_probs=13.1
Q ss_pred cCCHHHHHHHHHHHHH
Q 028601 180 GLTEAELEALIEQVEE 195 (207)
Q Consensus 180 eLtpEEle~L~aEIE~ 195 (207)
.++++|.+++.+|+++
T Consensus 56 ~l~~~e~~~~~~El~r 71 (117)
T TIGR03142 56 LLDEAEAEAARAELQR 71 (117)
T ss_pred CCCHHHHHHHHHHHHH
Confidence 3488899999999886
No 14
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=73.29 E-value=5.4 Score=41.55 Aligned_cols=84 Identities=15% Similarity=0.217 Sum_probs=46.7
Q ss_pred hHHHHHHHHHHHHhhHHhCCCcc--cchhHHHHHHHhhhhhheeeeeeeeeecCCccHH--HHHHHHHHHHHH-HHHhcC
Q 028601 107 GVGVTVIGYGLKSGLELFGVDPL--QAGNVVEVIVVLGLTLGWVSTYIFRVSNKEMTYA--QQLRDYEDKVMQ-KRLEGL 181 (207)
Q Consensus 107 GlgvfllGg~lY~gLq~~GlD~~--~AGiwsQ~lLVlGlvVgWv~SYLfRV~tk~MTY~--qQ~kdYE~avLQ-KRleeL 181 (207)
.+++++++.++|.+-..+++++. -|+.|+=++++++++++|++..++|. +. .+.+.-+++.-+ ++-+..
T Consensus 3 ~l~~~~l~~~iW~~gp~~~~~~~~Pl~~~~~r~~~i~~~~~~~~~~~~~~~------~~~~r~~~~~~~~~~~~~~~~~~ 76 (1169)
T TIGR03348 3 LLGLILLCILIWWAGPLLAVGDYKPLESVWARLLIIAVLLLVWLLWLLIRQ------WRARRRNQQLLAALAAPTKLKAD 76 (1169)
T ss_pred HHHHHHHHHHHHHhhhhhhcCCCCccccHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHhhhcccccccCC
Confidence 45556666677777666666554 56788877777666677777666544 11 111122222211 111111
Q ss_pred C--HHHHHHHHHHHHHH
Q 028601 182 T--EAELEALIEQVEEE 196 (207)
Q Consensus 182 t--pEEle~L~aEIE~E 196 (207)
+ .+|++.|++.+++-
T Consensus 77 ~~~~~~~~~l~~~~~~a 93 (1169)
T TIGR03348 77 AAAEAEIRELRARFNEA 93 (1169)
T ss_pred ccchHHHHHHHHHHHHH
Confidence 2 47888888877763
No 15
>PF06295 DUF1043: Protein of unknown function (DUF1043); InterPro: IPR009386 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=73.19 E-value=2.7 Score=33.34 Aligned_cols=20 Identities=25% Similarity=0.624 Sum_probs=13.7
Q ss_pred HHHHhhhhhheeeeeeeeeecCC
Q 028601 137 VIVVLGLTLGWVSTYIFRVSNKE 159 (207)
Q Consensus 137 ~lLVlGlvVgWv~SYLfRV~tk~ 159 (207)
+.||+|++|||+.. |..+++
T Consensus 4 i~lvvG~iiG~~~~---r~~~~~ 23 (128)
T PF06295_consen 4 IGLVVGLIIGFLIG---RLTSSN 23 (128)
T ss_pred HHHHHHHHHHHHHH---HHhccc
Confidence 45788888999864 445554
No 16
>PRK11677 hypothetical protein; Provisional
Probab=73.19 E-value=5 Score=32.96 Aligned_cols=16 Identities=25% Similarity=0.486 Sum_probs=11.5
Q ss_pred HHHHhhhhhheeeeee
Q 028601 137 VIVVLGLTLGWVSTYI 152 (207)
Q Consensus 137 ~lLVlGlvVgWv~SYL 152 (207)
+.||+|++|||+...+
T Consensus 8 i~livG~iiG~~~~R~ 23 (134)
T PRK11677 8 IGLVVGIIIGAVAMRF 23 (134)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 5677778888887643
No 17
>PRK03557 zinc transporter ZitB; Provisional
Probab=70.31 E-value=7.2 Score=34.42 Aligned_cols=33 Identities=21% Similarity=0.374 Sum_probs=20.4
Q ss_pred CCCCccccchhh---hhhhHHHHHHHHH-HHHhhHHh
Q 028601 92 TETPFGYTRKDV---LLIGVGVTVIGYG-LKSGLELF 124 (207)
Q Consensus 92 ~~~pFgMtR~DV---I~IGlgvfllGg~-lY~gLq~~ 124 (207)
++-|||+.|... +..|+.++++|+. +|-+.+.+
T Consensus 77 ~~hpyG~~r~E~l~al~~~~~l~~~~~~i~~eai~~l 113 (312)
T PRK03557 77 IRHTFGWLRLTTLAAFVNAIALVVITILIVWEAIERF 113 (312)
T ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468999999985 4555555555533 33445543
No 18
>TIGR01297 CDF cation diffusion facilitator family transporter. This model describes a broadly distributed family of transporters, a number of which have been shown to transport divalent cations of cobalt, cadmium and/or zinc. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.
Probab=69.95 E-value=15 Score=30.53 Aligned_cols=79 Identities=22% Similarity=0.401 Sum_probs=35.7
Q ss_pred CCCCccccchhhh---hhhHHHHHHHH-HHHHhhHHh-CCCcccchhHHHHHHHhhhhhhee-eeeeeee--ecCCccHH
Q 028601 92 TETPFGYTRKDVL---LIGVGVTVIGY-GLKSGLELF-GVDPLQAGNVVEVIVVLGLTLGWV-STYIFRV--SNKEMTYA 163 (207)
Q Consensus 92 ~~~pFgMtR~DVI---~IGlgvfllGg-~lY~gLq~~-GlD~~~AGiwsQ~lLVlGlvVgWv-~SYLfRV--~tk~MTY~ 163 (207)
++-|||+.|.+.+ ..|+.+++.|+ .+|-+++.+ .=++..-..+.-.+.++++++-++ .-|..|+ -.+++...
T Consensus 48 ~~~pyG~~r~E~l~~l~~~~~l~~~~~~~~~~si~~l~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~s~~l~ 127 (268)
T TIGR01297 48 ERHPFGHGRAEILAALLNGLFLVVVALFILYEAIERLINPEPEIDGGTMLIVAIVGLIVNLILALYLHRVGHRLGSLALR 127 (268)
T ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccchhHHHHHHHHHHHHHHHHHHHHHhCccCCCHHHH
Confidence 4699999998744 34443333332 223334433 111122223333344444443333 3344443 23345555
Q ss_pred HHHHHHH
Q 028601 164 QQLRDYE 170 (207)
Q Consensus 164 qQ~kdYE 170 (207)
....++.
T Consensus 128 a~~~~~~ 134 (268)
T TIGR01297 128 AAALHVL 134 (268)
T ss_pred HHHHHHH
Confidence 5555554
No 19
>PRK11380 hypothetical protein; Provisional
Probab=68.44 E-value=7.1 Score=37.01 Aligned_cols=34 Identities=32% Similarity=0.349 Sum_probs=25.1
Q ss_pred eeeeeecCCccHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 028601 151 YIFRVSNKEMTYAQQLRDYEDKVMQKRLEGLTEAELEALI 190 (207)
Q Consensus 151 YLfRV~tk~MTY~qQ~kdYE~avLQKRleeLtpEEle~L~ 190 (207)
-+||++-+ .=-+|++-|+ |+|++.||+|++++|+
T Consensus 89 ~~~~~~~~--~~~eq~~yy~----~~~~~~LteEq~r~L~ 122 (353)
T PRK11380 89 IVRAGFKK--AKKEQLRYYQ----AKGIEPLSEEKRQALQ 122 (353)
T ss_pred HHHHHHcc--chHHHHHHHH----HcCCCCCCHHHHHHHH
Confidence 45676642 2246777665 7899999999999986
No 20
>PF12666 PrgI: PrgI family protein; InterPro: IPR024414 This family of bacterial proteins is functionally uncharacterised. Proteins in this family are typically between 116 and 146 amino acids in length. PrgI is found encoded on plasmids of Enterococcus faecalis, its function is not known.
Probab=66.45 E-value=12 Score=27.24 Aligned_cols=34 Identities=24% Similarity=0.384 Sum_probs=25.7
Q ss_pred CCCCCccccchhhhhhhHHHHHHHHHHHHhh-HHhC
Q 028601 91 QTETPFGYTRKDVLLIGVGVTVIGYGLKSGL-ELFG 125 (207)
Q Consensus 91 ~~~~pFgMtR~DVI~IGlgvfllGg~lY~gL-q~~G 125 (207)
++|.=||+|-...+.+++++.+. +++|..+ ..+|
T Consensus 10 e~ki~~GlT~RQl~~l~~~~~~~-~~~~~~~~~~l~ 44 (93)
T PF12666_consen 10 EEKIFFGLTLRQLICLAIGALVG-VGVYLLLWFFLG 44 (93)
T ss_pred cchhccCCCHHHHHHHHHHHHHH-HHHHHHHHHhcc
Confidence 67788899999999999988654 4566654 3555
No 21
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=66.41 E-value=8.5 Score=29.86 Aligned_cols=51 Identities=18% Similarity=0.246 Sum_probs=27.1
Q ss_pred hheeeeeeeeeecCCccHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Q 028601 145 LGWVSTYIFRVSNKEMTYAQQLRDYEDKVMQKRLEGLTEAELEALIEQVEEEKR 198 (207)
Q Consensus 145 VgWv~SYLfRV~tk~MTY~qQ~kdYE~avLQKRleeLtpEEle~L~aEIE~Ek~ 198 (207)
++|+.-+++---+|-..|.++.+++++ +++++++| .+|-++|.+||+.-++
T Consensus 12 l~~l~y~l~~g~~G~~~~~~l~~q~~~--~~~e~~~l-~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 12 LVWLQYSLWFGKNGILDYWRVNDQVAA--QQQTNAKL-KARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHH--HHHHHHHH-HHHHHHHHHHHHHhhC
Confidence 344443333223444578888887763 34444444 4455666666665443
No 22
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function. One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.
Probab=65.35 E-value=15 Score=33.02 Aligned_cols=16 Identities=25% Similarity=0.343 Sum_probs=13.1
Q ss_pred HHHhcCCHHHHHHHHH
Q 028601 176 KRLEGLTEAELEALIE 191 (207)
Q Consensus 176 KRleeLtpEEle~L~a 191 (207)
+++++||||||.++++
T Consensus 297 ~~~~~lspeeQrK~ee 312 (321)
T PF07946_consen 297 RKLSKLSPEEQRKYEE 312 (321)
T ss_pred HHHhcCCHHHHHHHHH
Confidence 3489999999999873
No 23
>PRK03573 transcriptional regulator SlyA; Provisional
Probab=64.89 E-value=29 Score=26.48 Aligned_cols=100 Identities=13% Similarity=0.178 Sum_probs=62.5
Q ss_pred CCccccchhhhhhhHHHHHHH-HH-HHHhhHHhCCCcccchhHHHHHHHhhhhhheeee------eeeeeecCCccHHHH
Q 028601 94 TPFGYTRKDVLLIGVGVTVIG-YG-LKSGLELFGVDPLQAGNVVEVIVVLGLTLGWVST------YIFRVSNKEMTYAQQ 165 (207)
Q Consensus 94 ~pFgMtR~DVI~IGlgvfllG-g~-lY~gLq~~GlD~~~AGiwsQ~lLVlGlvVgWv~S------YLfRV~tk~MTY~qQ 165 (207)
.|+|+|.....++....- .+ +. .--+-..+|+|.....-.+.-+-=-|+ |-..-. +....--+-....++
T Consensus 25 ~~~glt~~q~~vL~~l~~-~~~~~t~~eLa~~l~~~~~tvt~~v~~Le~~Gl-V~r~~~~~DrR~~~l~LT~~G~~~~~~ 102 (144)
T PRK03573 25 KPLELTQTHWVTLHNIHQ-LPPEQSQIQLAKAIGIEQPSLVRTLDQLEEKGL-ISRQTCASDRRAKRIKLTEKAEPLISE 102 (144)
T ss_pred HhcCCCHHHHHHHHHHHH-cCCCCCHHHHHHHhCCChhhHHHHHHHHHHCCC-EeeecCCCCcCeeeeEEChHHHHHHHH
Confidence 578998888665433321 22 11 223355888887765555555444443 222211 333444444557777
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 028601 166 LRDYEDKVMQKRLEGLTEAELEALIEQVEE 195 (207)
Q Consensus 166 ~kdYE~avLQKRleeLtpEEle~L~aEIE~ 195 (207)
.....++..++-++.++|||++.+.+-++.
T Consensus 103 ~~~~~~~~~~~~~~~l~~ee~~~l~~~l~~ 132 (144)
T PRK03573 103 VEAVINKTRAEILHGISAEEIEQLITLIAK 132 (144)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 788888889999999999999998877765
No 24
>PF06814 Lung_7-TM_R: Lung seven transmembrane receptor; InterPro: IPR009637 This family represents a conserved region with eukaryotic lung seven transmembrane receptors and related proteins.; GO: 0016021 integral to membrane
Probab=63.44 E-value=10 Score=32.77 Aligned_cols=77 Identities=17% Similarity=0.119 Sum_probs=49.9
Q ss_pred cchhhhhhhHHHHHHHHHHHHhhHHhCCCcccchhHHHHHHHhhh------hhheeeeeeeeeecCCccHHHHHHHHHHH
Q 028601 99 TRKDVLLIGVGVTVIGYGLKSGLELFGVDPLQAGNVVEVIVVLGL------TLGWVSTYIFRVSNKEMTYAQQLRDYEDK 172 (207)
Q Consensus 99 tR~DVI~IGlgvfllGg~lY~gLq~~GlD~~~AGiwsQ~lLVlGl------vVgWv~SYLfRV~tk~MTY~qQ~kdYE~a 172 (207)
+.+.++.+++..+++..+.+..-...+......+.|..+++++=+ .+.|+ ++..++.|+.-+.+|++++.
T Consensus 150 ~~~~v~~l~i~~~v~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~wi----~~sL~~t~~~lk~~~q~~KL 225 (295)
T PF06814_consen 150 REKKVLMLVILYFVFSNIAYIIREESSPSDSSYASWNFIFFLLPLCILDLFFIVWI----FRSLSKTIRDLKARRQTAKL 225 (295)
T ss_pred ceeehhHHHHHHHHHHHHHHHHHHhcCCccchhhhHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence 456788888888888866654443333333333445555544422 24565 55567788888999999988
Q ss_pred HHHHHHh
Q 028601 173 VMQKRLE 179 (207)
Q Consensus 173 vLQKRle 179 (207)
.|=+||-
T Consensus 226 ~lyr~f~ 232 (295)
T PF06814_consen 226 SLYRRFY 232 (295)
T ss_pred HHHHHHH
Confidence 8888774
No 25
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=63.42 E-value=7 Score=26.88 Aligned_cols=36 Identities=31% Similarity=0.350 Sum_probs=15.2
Q ss_pred cCCccHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 028601 157 NKEMTYAQQLRDYEDKVMQKRLEGLTEAELEALIEQVEE 195 (207)
Q Consensus 157 tk~MTY~qQ~kdYE~avLQKRleeLtpEEle~L~aEIE~ 195 (207)
.+-++|.+..+.+. .++++++++. +|.+.|.+|++.
T Consensus 14 ~~~~~~~~~~~ei~--~l~~~i~~l~-~e~~~L~~ei~~ 49 (80)
T PF04977_consen 14 SGYSRYYQLNQEIA--ELQKEIEELK-KENEELKEEIER 49 (80)
T ss_pred chHHHHHHHHHHHH--HHHHHHHHHH-HHHHHHHHHHHH
Confidence 34444544444332 3444444442 234444444443
No 26
>PF11003 DUF2842: Protein of unknown function (DUF2842); InterPro: IPR021265 This bacterial family of proteins have no known function.
Probab=63.04 E-value=7.7 Score=28.09 Aligned_cols=45 Identities=29% Similarity=0.293 Sum_probs=32.4
Q ss_pred hhhHHHHHHHHHHHHhhHHhCCCcc--cchhHHHHHHHhhhhhheee
Q 028601 105 LIGVGVTVIGYGLKSGLELFGVDPL--QAGNVVEVIVVLGLTLGWVS 149 (207)
Q Consensus 105 ~IGlgvfllGg~lY~gLq~~GlD~~--~AGiwsQ~lLVlGlvVgWv~ 149 (207)
.||+.++++|...|..+-..=.|.. ....|.|+++-+.+-++|+.
T Consensus 3 ~ig~v~ll~~l~vY~~~a~~l~~~~~~~~~~~~~l~~Yvv~G~~Wvl 49 (62)
T PF11003_consen 3 LIGLVLLLVGLPVYAVLAVTLADWLLARWPWWVQLIYYVVLGLLWVL 49 (62)
T ss_pred eehhHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHH
Confidence 3678888888777777553212222 88999999988877889974
No 27
>PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional
Probab=62.81 E-value=6 Score=35.96 Aligned_cols=45 Identities=24% Similarity=0.451 Sum_probs=33.2
Q ss_pred eeeeeecCCccHHH-----------HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 028601 151 YIFRVSNKEMTYAQ-----------QLRDYEDKVMQKRLEGLTEAELEALIEQVEEEK 197 (207)
Q Consensus 151 YLfRV~tk~MTY~q-----------Q~kdYE~avLQKRleeLtpEEle~L~aEIE~Ek 197 (207)
-|||+-.++.+-.. ..+|| -.+|.||..|+|||.++||+++++.=
T Consensus 237 plye~~~g~~~~~~~~~~ld~~~~~pv~~~--l~~q~Rf~~L~~~~~~~~q~~v~~~~ 292 (299)
T PRK11865 237 PLFEIENGKFKITYEPLHLDRRTRKPIEEY--LKVQGRFKHLTEEDIEILQKYIDEKW 292 (299)
T ss_pred eEEEEECCeeccCCCcccccccCCCCHHHH--HhhCcchhcCCHHHHHHHHHHHHHHH
Confidence 46788776654322 34444 35699999999999999999998843
No 28
>PF11304 DUF3106: Protein of unknown function (DUF3106); InterPro: IPR021455 Some members in this family of proteins are annotated as transmembrane proteins however this cannot be confirmed. Currently no function is known.
Probab=62.68 E-value=17 Score=28.23 Aligned_cols=22 Identities=14% Similarity=0.327 Sum_probs=15.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 028601 174 MQKRLEGLTEAELEALIEQVEE 195 (207)
Q Consensus 174 LQKRleeLtpEEle~L~aEIE~ 195 (207)
+-.|+..|||||++.+++.+..
T Consensus 34 ~a~r~~~mspeqq~r~~~rm~~ 55 (107)
T PF11304_consen 34 IAERWPSMSPEQQQRLRERMRR 55 (107)
T ss_pred HHHHHhcCCHHHHHHHHHHHHH
Confidence 5667777777777777776664
No 29
>KOG2019 consensus Metalloendoprotease HMP1 (insulinase superfamily) [General function prediction only; Posttranslational modification, protein turnover, chaperones]
Probab=61.33 E-value=16 Score=38.45 Aligned_cols=39 Identities=23% Similarity=0.393 Sum_probs=33.6
Q ss_pred cCCccHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 028601 157 NKEMTYAQQLRDYEDKVMQKRLEGLTEAELEALIEQVEE 195 (207)
Q Consensus 157 tk~MTY~qQ~kdYE~avLQKRleeLtpEEle~L~aEIE~ 195 (207)
-.+=+|++++.+=|...||+|-++||||+++.+-+-=++
T Consensus 493 qpd~e~~~~~~~eE~tkL~ek~~alteeD~~ei~k~~~e 531 (998)
T KOG2019|consen 493 QPDPEFAEKLEQEEATKLEEKKAALTEEDLAEIAKAGEE 531 (998)
T ss_pred cCCchhhHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Confidence 345689999999999999999999999999888765554
No 30
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=61.27 E-value=22 Score=28.38 Aligned_cols=45 Identities=22% Similarity=0.316 Sum_probs=27.5
Q ss_pred hhhhhhhHHHHHHHHHHHHh--hHHhCC-CcccchhHHHHHHHhhhhhhee
Q 028601 101 KDVLLIGVGVTVIGYGLKSG--LELFGV-DPLQAGNVVEVIVVLGLTLGWV 148 (207)
Q Consensus 101 ~DVI~IGlgvfllGg~lY~g--Lq~~Gl-D~~~AGiwsQ~lLVlGlvVgWv 148 (207)
.+.|.+++++|++|.++... +-++|- |.-..-.| +++|+|+ +.++
T Consensus 41 wK~I~la~~Lli~G~~li~~g~l~~~~~i~~~~~~~~--~llilG~-L~fI 88 (115)
T PF05915_consen 41 WKSIALAVFLLIFGTVLIIIGLLLFFGHIDGDRDRGW--ALLILGI-LCFI 88 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCcccc--hHHHHHH-HHHh
Confidence 67888888888888665443 445553 43333333 6778876 4443
No 31
>PF12597 DUF3767: Protein of unknown function (DUF3767); InterPro: IPR022533 This group of proteins includes mitochodrial cytochrome c oxidase proteins [], and some transmembrane domain-containing proteins of unknown function known as FAM36A. Proteins in this family are typically between 112 and 199 amino acids in length.
Probab=60.46 E-value=27 Score=27.90 Aligned_cols=51 Identities=24% Similarity=0.330 Sum_probs=36.7
Q ss_pred CCCcccchhHHHHHHHhhhhhheeeeeeeeeecCCccHHHHHHHHHHHHHHHHHhcCCHHHHHH
Q 028601 125 GVDPLQAGNVVEVIVVLGLTLGWVSTYIFRVSNKEMTYAQQLRDYEDKVMQKRLEGLTEAELEA 188 (207)
Q Consensus 125 GlD~~~AGiwsQ~lLVlGlvVgWv~SYLfRV~tk~MTY~qQ~kdYE~avLQKRleeLtpEEle~ 188 (207)
+=.+..|-+|+=.-++++-++.|. |-+..++-|...+++=.|.|.+.+..+
T Consensus 62 ~~~~~~A~nwavgsF~l~s~~~we-------------~Cr~~r~~~~~~~~~~~e~~~~k~~~~ 112 (118)
T PF12597_consen 62 TSNPRKAANWAVGSFFLGSLGSWE-------------YCRYNRRKERQQMKRAVEAMQEKKRKK 112 (118)
T ss_pred cCCCccchhhhhHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 338889999998888888778884 566667777777777666665554443
No 32
>PF06518 DUF1104: Protein of unknown function (DUF1104); InterPro: IPR009488 This family consists of several hypothetical proteins of unknown function which appear to be found exclusively in Helicobacter pylori.; PDB: 2XRH_A.
Probab=60.22 E-value=7.2 Score=30.30 Aligned_cols=31 Identities=16% Similarity=0.346 Sum_probs=13.1
Q ss_pred CCccHHHHHHHHH---HHHHHHHHhcCCHHHHHHH
Q 028601 158 KEMTYAQQLRDYE---DKVMQKRLEGLTEAELEAL 189 (207)
Q Consensus 158 k~MTY~qQ~kdYE---~avLQKRleeLtpEEle~L 189 (207)
.+|| .++++.|+ ...|++|.++||++|+..+
T Consensus 58 ~~ms-~~e~~k~~~ev~k~~~~~~~~mS~kE~~~~ 91 (93)
T PF06518_consen 58 SKMS-VEERKKRREEVRKALEKRIKKMSVKEAKES 91 (93)
T ss_dssp TTS--HHHHHHHHHHHHHHHHHT----S-------
T ss_pred HHCC-HHHHHHHHHHHHHHHHHHHHhccccccccc
Confidence 4555 35666666 5678999999999998764
No 33
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=59.54 E-value=11 Score=35.84 Aligned_cols=11 Identities=18% Similarity=0.516 Sum_probs=5.4
Q ss_pred hhhheeeeeee
Q 028601 143 LTLGWVSTYIF 153 (207)
Q Consensus 143 lvVgWv~SYLf 153 (207)
++..|+..++.
T Consensus 64 ~~~~~~~~~~~ 74 (779)
T PRK11091 64 LITPWAVYFLS 74 (779)
T ss_pred HHHHHHHHHHH
Confidence 33455555544
No 34
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=56.82 E-value=6.2 Score=35.04 Aligned_cols=30 Identities=27% Similarity=0.412 Sum_probs=18.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc
Q 028601 170 EDKVMQKRLEGLTEAELEALIEQVEEEKRRL 200 (207)
Q Consensus 170 E~avLQKRleeLtpEEle~L~aEIE~Ek~~~ 200 (207)
|++.|++++.+| .++++.+.+|+++|.++.
T Consensus 74 EN~~Lr~e~~~l-~~~~~~~~~~l~~EN~rL 103 (283)
T TIGR00219 74 ENYKLRQELLKK-NQQLEILTQNLKQENVRL 103 (283)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 588899988888 344444444455554443
No 35
>TIGR02698 CopY_TcrY copper transport repressor, CopY/TcrY family. This family includes metal-fist type transcriptional repressors of copper transport systems such as copYZAB of Enterococcus hirae and tcrYAZB (transferble copper resistance) of an Enterocuccus faecium plasmid. High levels of copper can displace zinc and prevent binding by the repressor, activating efflux by copper resistance transporters. The most closely related proteins excluded by this model are antibiotic resistance regulators including the methicillin resistance regulatory protein MecI.
Probab=54.89 E-value=47 Score=26.15 Aligned_cols=30 Identities=23% Similarity=0.382 Sum_probs=22.5
Q ss_pred HHHHHHHh--cCCHHHHHHHHHHHHHHHhccc
Q 028601 172 KVMQKRLE--GLTEAELEALIEQVEEEKRRLA 201 (207)
Q Consensus 172 avLQKRle--eLtpEEle~L~aEIE~Ek~~~~ 201 (207)
+.+..=++ .+|+||+++|++-|++.+..++
T Consensus 91 ~ll~~l~~~~~ls~eele~L~~li~~~~~~~~ 122 (130)
T TIGR02698 91 AVIADLIEESPLSQTDIEKLEKLLSEKKSTAV 122 (130)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHhcccCCC
Confidence 33444444 7999999999999998776654
No 36
>PRK11462 putative transporter; Provisional
Probab=54.72 E-value=35 Score=30.88 Aligned_cols=23 Identities=39% Similarity=0.567 Sum_probs=16.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHh
Q 028601 176 KRLEGLTEAELEALIEQVEEEKR 198 (207)
Q Consensus 176 KRleeLtpEEle~L~aEIE~Ek~ 198 (207)
.|+-.|++++.+++++|+++.|+
T Consensus 425 ~~~y~l~~~~~~~i~~~l~~~~~ 447 (460)
T PRK11462 425 KRYYSLTTHNLKTVMEQLAQGKR 447 (460)
T ss_pred HHhccCCHHHHHHHHHHHHHHHh
Confidence 34556777888888888876554
No 37
>COG0099 RpsM Ribosomal protein S13 [Translation, ribosomal structure and biogenesis]
Probab=54.71 E-value=12 Score=30.77 Aligned_cols=22 Identities=36% Similarity=0.545 Sum_probs=19.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH
Q 028601 174 MQKRLEGLTEAELEALIEQVEE 195 (207)
Q Consensus 174 LQKRleeLtpEEle~L~aEIE~ 195 (207)
..+|..+||+||+++|-++|+.
T Consensus 41 ~~~r~~eLteeei~~ir~~i~~ 62 (121)
T COG0099 41 PDKRVGELTEEEIERLRDAIQN 62 (121)
T ss_pred HhHhhccCCHHHHHHHHHHHHh
Confidence 4689999999999999999983
No 38
>PF07226 DUF1422: Protein of unknown function (DUF1422); InterPro: IPR009867 This family consists of several hypothetical bacterial proteins of around 120 residues in length. The function of this family is unknown.
Probab=53.82 E-value=19 Score=29.63 Aligned_cols=45 Identities=18% Similarity=0.157 Sum_probs=34.2
Q ss_pred hhhhHHHHHHHHHHHHhhHHhCCCcccchhHHHHHHHhhhhhheeee
Q 028601 104 LLIGVGVTVIGYGLKSGLELFGVDPLQAGNVVEVIVVLGLTLGWVST 150 (207)
Q Consensus 104 I~IGlgvfllGg~lY~gLq~~GlD~~~AGiwsQ~lLVlGlvVgWv~S 150 (207)
..++++.|++|..+|..+..+=. |---.|...+++++.| +.|++.
T Consensus 65 P~~a~acFflG~f~ySA~vraqy-PeiGSNFfp~il~l~L-~~Wi~~ 109 (117)
T PF07226_consen 65 PKLALACFFLGLFGYSAFVRAQY-PEIGSNFFPSILCLIL-VFWIGY 109 (117)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhc-hhhhhhHHHHHHHHHH-HHHHHH
Confidence 36899999999999999775544 3334577778888855 899863
No 39
>PRK10236 hypothetical protein; Provisional
Probab=53.30 E-value=15 Score=33.10 Aligned_cols=26 Identities=8% Similarity=0.341 Sum_probs=23.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHH
Q 028601 171 DKVMQKRLEGLTEAELEALIEQVEEE 196 (207)
Q Consensus 171 ~avLQKRleeLtpEEle~L~aEIE~E 196 (207)
..++++=++.|||||++.|.++++..
T Consensus 119 ~kll~~a~~kms~eE~~~L~~~l~~~ 144 (237)
T PRK10236 119 EQFLRNTWKKMDEEHKQEFLHAVDAR 144 (237)
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHhhh
Confidence 66788899999999999999999875
No 40
>PF08451 A_deaminase_N: Adenosine/AMP deaminase N-terminal; InterPro: IPR013659 This domain is found to the N terminus of the Adenosine/AMP deaminase domain (IPR001365 from INTERPRO) in metazoan proteins such as the Cat eye syndrome critical region protein 1 and its homologues. ; GO: 0005615 extracellular space; PDB: 3LGG_B 3LGD_B.
Probab=53.07 E-value=16 Score=28.07 Aligned_cols=36 Identities=22% Similarity=0.132 Sum_probs=20.1
Q ss_pred eeeecCCccHHHHHHHHHHHHHHHHHh---cCCHHHHHH
Q 028601 153 FRVSNKEMTYAQQLRDYEDKVMQKRLE---GLTEAELEA 188 (207)
Q Consensus 153 fRV~tk~MTY~qQ~kdYE~avLQKRle---eLtpEEle~ 188 (207)
..-.+...+|.+||..+-+.+-..++. .||+.|+++
T Consensus 14 ~~~~~~~~~y~~~R~~l~~~E~~~~lG~~l~Lt~~E~~a 52 (96)
T PF08451_consen 14 SLSRPTPEDYKRQRNALLQEEESRRLGGDLVLTPKEQKA 52 (96)
T ss_dssp ---------HHHHHHHHHHHHHHHSTTTT----HHHHHH
T ss_pred cccCCCccHHHHHHHHHHHHHHHhcCCCCCccCHHHHHH
Confidence 334566789999999998887777776 488888764
No 41
>COG1422 Predicted membrane protein [Function unknown]
Probab=52.51 E-value=8.7 Score=33.89 Aligned_cols=53 Identities=23% Similarity=0.324 Sum_probs=31.8
Q ss_pred HHHHhhhhhheeeeeeeeeecCCccHHHHHHHHH--HHHHHHHHhcCCH----HHHHHHHHHH
Q 028601 137 VIVVLGLTLGWVSTYIFRVSNKEMTYAQQLRDYE--DKVMQKRLEGLTE----AELEALIEQV 193 (207)
Q Consensus 137 ~lLVlGlvVgWv~SYLfRV~tk~MTY~qQ~kdYE--~avLQKRleeLtp----EEle~L~aEI 193 (207)
++||.|+++|=.++++-..+.. .+-.++|+ -+++||+++|..+ +-+++|+++-
T Consensus 49 vilV~avi~gl~~~i~~~~liD----~ekm~~~qk~m~efq~e~~eA~~~~d~~~lkkLq~~q 107 (201)
T COG1422 49 VILVAAVITGLYITILQKLLID----QEKMKELQKMMKEFQKEFREAQESGDMKKLKKLQEKQ 107 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHhcc----HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 4666777777777776544432 34455555 4677888877765 4444444443
No 42
>PF15372 DUF4600: Domain of unknown function (DUF4600)
Probab=52.24 E-value=15 Score=30.40 Aligned_cols=26 Identities=38% Similarity=0.640 Sum_probs=22.5
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHhccc
Q 028601 176 KRLEGLTEAELEALIEQVEEEKRRLA 201 (207)
Q Consensus 176 KRleeLtpEEle~L~aEIE~Ek~~~~ 201 (207)
++++.||.+++..|+.++|+||....
T Consensus 46 R~ye~Ms~~~l~~llkqLEkeK~~Le 71 (129)
T PF15372_consen 46 RRYEQMSVESLNQLLKQLEKEKRSLE 71 (129)
T ss_pred HHHhhccHHHHHHHHHHHHHHHHHHH
Confidence 35699999999999999999987653
No 43
>PF01956 DUF106: Integral membrane protein DUF106; InterPro: IPR002809 This entry represents a group of eukaryotic and archaeal proteins that have no known function. Members are predicted to be integral membrane proteins.; GO: 0016020 membrane
Probab=49.76 E-value=9.4 Score=30.62 Aligned_cols=54 Identities=19% Similarity=0.207 Sum_probs=32.0
Q ss_pred hheeeeeeeeeecCCccHHHHHHHHH--HHHHHHHH-------hcCCHHHHHHHHHHHHHHHhc
Q 028601 145 LGWVSTYIFRVSNKEMTYAQQLRDYE--DKVMQKRL-------EGLTEAELEALIEQVEEEKRR 199 (207)
Q Consensus 145 VgWv~SYLfRV~tk~MTY~qQ~kdYE--~avLQKRl-------eeLtpEEle~L~aEIE~Ek~~ 199 (207)
++=+.+|+--.+++..+|.+ .++|+ ++.++||. +...++.+++.++|+-+++.+
T Consensus 22 ~~~~~~~~s~l~~~~~i~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~ 84 (168)
T PF01956_consen 22 IAILRGLISELLQKFLIDRK-MDKYQKRMKEFQKRYRELRKNGDFKKPKKLEKRQMELMEKQQE 84 (168)
T ss_pred HHHHHHHHHHHHhccccccc-cHHHHHHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHHH
Confidence 44455555555566666665 34443 34444444 456788888888888776543
No 44
>PF03457 HA: Helicase associated domain; InterPro: IPR005114 This short domain is found in multiple copies in bacterial helicase proteins. The domain is predicted to contain 3 alpha helices. The function of this domain may be to bind nucleic acid.; PDB: 2KTA_A.
Probab=49.17 E-value=24 Score=24.19 Aligned_cols=22 Identities=32% Similarity=0.385 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 028601 163 AQQLRDYEDKVMQKRLEGLTEAELEALIE 191 (207)
Q Consensus 163 ~qQ~kdYE~avLQKRleeLtpEEle~L~a 191 (207)
+.||+.|+. ..||||..++|.+
T Consensus 43 ~~qR~~~r~-------g~L~~er~~~L~~ 64 (68)
T PF03457_consen 43 NNQRRKYRK-------GKLTPERIERLDA 64 (68)
T ss_dssp HHHHHHHHH-------T---HHHHHHHHH
T ss_pred HHHHHHHHc-------CCCCHHHHHHHHc
Confidence 579999987 4488888777753
No 45
>PF14143 YrhC: YrhC-like protein
Probab=48.30 E-value=33 Score=25.87 Aligned_cols=43 Identities=12% Similarity=0.074 Sum_probs=26.3
Q ss_pred hhhHHHHHHHHHHHHhh--HHhCCCcccchhHHHHHHHhhhhhhee
Q 028601 105 LIGVGVTVIGYGLKSGL--ELFGVDPLQAGNVVEVIVVLGLTLGWV 148 (207)
Q Consensus 105 ~IGlgvfllGg~lY~gL--q~~GlD~~~AGiwsQ~lLVlGlvVgWv 148 (207)
--|+.++.++..+|.|+ +.-|.+..+..+..-++.+. ++..|.
T Consensus 12 rf~~vLLAvs~FlYiG~viP~~~~~~~~~~~m~~~~~~~-l~~a~~ 56 (72)
T PF14143_consen 12 RFAFVLLAVSTFLYIGTVIPIGAKETAQKYIMMGAICIF-LAGAFL 56 (72)
T ss_pred HHHHHHHHHHHHHHHHhhCCccchhHHHHHHHHHHHHHH-HHHHHH
Confidence 45677788888899884 45577766665554444333 334443
No 46
>cd01390 HMGB-UBF_HMG-box HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III members include nucleolar and mitochondrial transcription factors, UBF and mtTF1, which bind four-way DNA junctions.
Probab=47.78 E-value=77 Score=20.70 Aligned_cols=28 Identities=25% Similarity=0.438 Sum_probs=22.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHh
Q 028601 171 DKVMQKRLEGLTEAELEALIEQVEEEKR 198 (207)
Q Consensus 171 ~avLQKRleeLtpEEle~L~aEIE~Ek~ 198 (207)
...+-++..+||++|.+.-.++-++++.
T Consensus 32 ~~~~~~~W~~ls~~eK~~y~~~a~~~~~ 59 (66)
T cd01390 32 TKILGEKWKELSEEEKKKYEEKAEKDKE 59 (66)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 4567889999999999998887776654
No 47
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=47.72 E-value=28 Score=30.90 Aligned_cols=35 Identities=14% Similarity=0.289 Sum_probs=26.7
Q ss_pred HHHHHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHHHh
Q 028601 163 AQQLRDYE--DKVMQKRLEGLTEAELEALIEQVEEEKR 198 (207)
Q Consensus 163 ~qQ~kdYE--~avLQKRleeLtpEEle~L~aEIE~Ek~ 198 (207)
..||.+|+ +.+||+.+. ....++.+|+.||+.-+.
T Consensus 85 tsQRDRFR~Rn~ELE~elr-~~~~~~~~L~~Ev~~L~~ 121 (248)
T PF08172_consen 85 TSQRDRFRQRNAELEEELR-KQQQTISSLRREVESLRA 121 (248)
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 48999999 778888874 456788888888886443
No 48
>PLN03094 Substrate binding subunit of ER-derived-lipid transporter; Provisional
Probab=46.42 E-value=28 Score=32.73 Aligned_cols=26 Identities=23% Similarity=0.399 Sum_probs=20.5
Q ss_pred CccccchhhhhhhHHHHHHHHHHHHh
Q 028601 95 PFGYTRKDVLLIGVGVTVIGYGLKSG 120 (207)
Q Consensus 95 pFgMtR~DVI~IGlgvfllGg~lY~g 120 (207)
-|||.|.-|--..+|+|++.+++..+
T Consensus 75 ~~~~~rrsvrEg~VGlfvL~gi~ll~ 100 (370)
T PLN03094 75 DFGFGKRSVWEGGVGLFLLSGAALLA 100 (370)
T ss_pred hcCCcchhHHHHHHHHHHHHHHHHHH
Confidence 39999999988888888877665443
No 49
>PF10439 Bacteriocin_IIc: Bacteriocin class II with double-glycine leader peptide; InterPro: IPR019493 Bacteriocins are proteinaceous toxins produced by bacteria to inhibit the growth of similar or closely related strains. The producer bacteria are protected from the effects of their own bacteriocins by production of a specific immunity protein which is co-transcribed with the genes encoding the bacteriocins, e.g. IPR015046 from INTERPRO. The bacteriocins are structurally more specific than their immunity-protein counterparts. Typically, production of the bacteriocin gene is from within an operon carrying up to 6 genes including a typical two-component regulatory system (R and H), a small peptide pheromone (C), and a dedicated ABC transporter (A and -B) as well as an immunity protein []. The ABC transporter is thought to recognise the N termini of both the pheromone and the bacteriocins and to transport these peptides across the cytoplasmic membrane, concurrent with cleavage at the conserved double-glycine motif. Cleaved extracellular C can then bind to the sensor kinase, H, resulting in activation of R and up-regulation of the entire gene cluster via binding to consensus sequences within each promoter []. It seems likely that the whole regulon is carried on a transmissible plasmid which is passed between closely related Firmicute species since many clinical isolates from different Firmicutes can produce at least two bacteriocins, and the same bacteriocins can be produced by different species. The proteins in this entry include amylovorin-L, lactacin-F and salivaricin CRL 1328, all of them class IIb two-peptide bacteriocins.
Probab=46.16 E-value=12 Score=26.51 Aligned_cols=14 Identities=36% Similarity=0.551 Sum_probs=12.2
Q ss_pred HHHhcCCHHHHHHH
Q 028601 176 KRLEGLTEAELEAL 189 (207)
Q Consensus 176 KRleeLtpEEle~L 189 (207)
++||+|++|||+..
T Consensus 3 ~~f~~L~~eeL~~I 16 (65)
T PF10439_consen 3 ENFEVLDEEELSSI 16 (65)
T ss_pred HHHHhcCHHHHHHh
Confidence 67999999999865
No 50
>PF15361 RIC3: Resistance to inhibitors of cholinesterase homologue 3
Probab=46.15 E-value=6.7 Score=32.45 Aligned_cols=23 Identities=39% Similarity=0.602 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHH
Q 028601 166 LRDYEDKVMQKRLEGLTEAELEAL 189 (207)
Q Consensus 166 ~kdYE~avLQKRleeLtpEEle~L 189 (207)
.-+||-+.||+||++ ||+.+++|
T Consensus 128 ~~~~eL~qLq~rL~q-TE~~m~ki 150 (152)
T PF15361_consen 128 ITDYELAQLQERLAQ-TERAMEKI 150 (152)
T ss_pred chHHHHHHHHHHHHH-HHHHHHHH
Confidence 445555555555554 44444443
No 51
>PRK09509 fieF ferrous iron efflux protein F; Reviewed
Probab=45.28 E-value=42 Score=29.21 Aligned_cols=14 Identities=29% Similarity=0.489 Sum_probs=10.9
Q ss_pred CCCCccccchhhhh
Q 028601 92 TETPFGYTRKDVLL 105 (207)
Q Consensus 92 ~~~pFgMtR~DVI~ 105 (207)
++-|||+.|...+.
T Consensus 69 ~~~pyG~~r~E~l~ 82 (299)
T PRK09509 69 DEHTFGHGKAESLA 82 (299)
T ss_pred CCCCCccHHHHHHH
Confidence 45899999988653
No 52
>PF00505 HMG_box: HMG (high mobility group) box; InterPro: IPR000910 High mobility group (HMG or HMGB) proteins are a family of relatively low molecular weight non-histone components in chromatin. HMG1 (also called HMG-T in fish) and HMG2 are two highly related proteins that bind single-stranded DNA preferentially and unwind double-stranded DNA. Although they have no sequence specificity, they have a high affinity for bent or distorted DNA, and bend linear DNA. HMG1 and HMG2 contain two DNA-binding HMG-box domains (A and B) that show structural and functional differences, and have a long acidic C-terminal domain rich in aspartic and glutamic acid residues. The acidic tail modulates the affinity of the tandem HMG boxes in HMG1 and 2 for a variety of DNA targets. HMG1 and 2 appear to play important architectural roles in the assembly of nucleoprotein complexes in a variety of biological processes, for example V(D)J recombination, the initiation of transcription, and DNA repair []. The profile in this entry describing the HMG-domains is much more general than the signature. In addition to the HMG1 and HMG2 proteins, HMG-domains occur in single or multiple copies in the following protein classes; the SOX family of transcription factors; SRY sex determining region Y protein and related proteins []; LEF1 lymphoid enhancer binding factor 1 []; SSRP recombination signal recognition protein; MTF1 mitochondrial transcription factor 1; UBF1/2 nucleolar transcription factors; Abf2 yeast ARS-binding factor []; and Saccharomyces cerevisiae transcription factors Ixr1, Rox1, Nhp6a, Nhp6b and Spp41.; GO: 0003677 DNA binding; PDB: 1I11_A 1J3C_A 1J3D_A 1WZ6_A 1WGF_A 2D7L_A 1GT0_D 3U2B_C 2CRJ_A 2CS1_A ....
Probab=45.13 E-value=76 Score=21.00 Aligned_cols=28 Identities=32% Similarity=0.462 Sum_probs=23.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHh
Q 028601 171 DKVMQKRLEGLTEAELEALIEQVEEEKR 198 (207)
Q Consensus 171 ~avLQKRleeLtpEEle~L~aEIE~Ek~ 198 (207)
...+.+...+||++|.+.-.++-++++.
T Consensus 32 ~~~~~~~W~~l~~~eK~~y~~~a~~~~~ 59 (69)
T PF00505_consen 32 SKILAQMWKNLSEEEKAPYKEEAEEEKE 59 (69)
T ss_dssp HHHHHHHHHCSHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 4567888999999999999888877654
No 53
>PRK11056 hypothetical protein; Provisional
Probab=45.04 E-value=35 Score=28.19 Aligned_cols=45 Identities=13% Similarity=0.112 Sum_probs=33.7
Q ss_pred hhhhHHHHHHHHHHHHhhHHhCCCcccchhHHHHHHHhhhhhheeee
Q 028601 104 LLIGVGVTVIGYGLKSGLELFGVDPLQAGNVVEVIVVLGLTLGWVST 150 (207)
Q Consensus 104 I~IGlgvfllGg~lY~gLq~~GlD~~~AGiwsQ~lLVlGlvVgWv~S 150 (207)
..++.+.|++|..+|..+..+=-. ---.|..-+++++++ +.|++.
T Consensus 65 P~~a~acFflG~f~ySA~vraeyP-eiGSNF~p~il~~~L-~~Wi~~ 109 (120)
T PRK11056 65 PGLAAACFFLGVFLYSAFVRAEYP-EIGSNFFPAVLSVIL-VFWIGR 109 (120)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCc-ccccchHHHHHHHHH-HHHHHH
Confidence 368899999999999997755432 233577778888855 899864
No 54
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=44.84 E-value=5.7 Score=35.57 Aligned_cols=17 Identities=29% Similarity=0.550 Sum_probs=14.4
Q ss_pred cccchhhhhhhHHHHHHH
Q 028601 97 GYTRKDVLLIGVGVTVIG 114 (207)
Q Consensus 97 gMtR~DVI~IGlgvfllG 114 (207)
-|.|+-|++|+|++ .+|
T Consensus 223 ~l~~G~VVlIslAi-ALG 239 (281)
T PF12768_consen 223 KLSRGFVVLISLAI-ALG 239 (281)
T ss_pred cccceEEEEEehHH-HHH
Confidence 47899999999998 666
No 55
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=44.74 E-value=22 Score=28.40 Aligned_cols=27 Identities=44% Similarity=0.667 Sum_probs=18.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHh
Q 028601 171 DKVMQKRLEGLTEAELEALIEQVEEEKR 198 (207)
Q Consensus 171 ~avLQKRleeLtpEEle~L~aEIE~Ek~ 198 (207)
++.++.++++| +++++.|..++++.++
T Consensus 107 e~~~~~~l~~L-~~~i~~L~~~~~~~~~ 133 (134)
T PF07047_consen 107 EEELQERLEEL-EERIEELEEQVEKQQE 133 (134)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHhc
Confidence 66677777777 5666777777766543
No 56
>PF03965 Penicillinase_R: Penicillinase repressor; InterPro: IPR005650 Proteins in this entry are transcriptional regulators found in a variety of bacteria and a small number of archaea. Many are BlaI/MecI proteins which regulate resistance to penicillins (beta-lactams), though at least one protein (Q47839 from SWISSPROT) appears to be involved in the regulation of copper homeostasis []. BlaI regulators repress the expression of penicillin-degrading enzymes (penicillinases) until the cell encounters the antiobiotic, at which point repression ceases and penicillinase expression occurs, allowing cell growth []. MecI regulators repress the expression of MecA, a cell-wall biosynthetic enzyme not inhibited by penicillins at clinically achievable concentrations, until the presence of the antibiotic is detected []. At this point repression ends and MecA expression occurs which, together with the switching off of the penicillin-sensitive enzymes, allows the cell to grow despite the presence of antibiotic.; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent; PDB: 2G9W_A 2K4B_A 1XSD_A 1SD4_A 1SD7_A 1SD6_A 2P7C_B 1P6R_A 1OKR_B 2D45_B ....
Probab=44.37 E-value=73 Score=23.99 Aligned_cols=46 Identities=24% Similarity=0.400 Sum_probs=26.9
Q ss_pred eeeeeeecCCccHHHHH-HHHH--------HHHHHHHHh--cCCHHHHHHHHHHHHH
Q 028601 150 TYIFRVSNKEMTYAQQL-RDYE--------DKVMQKRLE--GLTEAELEALIEQVEE 195 (207)
Q Consensus 150 SYLfRV~tk~MTY~qQ~-kdYE--------~avLQKRle--eLtpEEle~L~aEIE~ 195 (207)
.|+|+..-.+..|..+. ++.= .+.+..=++ ++||+|++.|.+-|+|
T Consensus 59 ~~~Y~p~is~~e~~~~~~~~~l~~~~~gs~~~l~~~l~~~~~ls~~el~~L~~li~e 115 (115)
T PF03965_consen 59 AYVYSPLISREEYLAQELRQFLDRLFDGSIPQLVAALVESEELSPEELEELRKLIDE 115 (115)
T ss_dssp CEEEEESSSHHHHHHHHHHHHHHHHSTTHHHHHHHHHHHCT-S-HHHHHHHHHHHH-
T ss_pred ceEEEeCCcHHHHHHHHHHHHHHHHhCCCHHHHHHHHHhcCCCCHHHHHHHHHHHcC
Confidence 57788766666665533 3222 233333333 5999999999998875
No 57
>cd00084 HMG-box High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors. HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenically distinct groups of Class I proteins bind DNA in a sequence specific fashion and contain a single HMG box. One group (SOX-TCF) includes transcription factors, TCF-1, -3, -4; and also SRY and LEF-1, which bind four-way DNA junctions and duplex DNA targets. The second group (MATA) includes fungal mating type gene products MC, MATA1 and Ste11. Class II and III proteins (HMGB-UBF) bind DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III member
Probab=44.14 E-value=86 Score=20.17 Aligned_cols=29 Identities=28% Similarity=0.446 Sum_probs=24.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 028601 171 DKVMQKRLEGLTEAELEALIEQVEEEKRR 199 (207)
Q Consensus 171 ~avLQKRleeLtpEEle~L~aEIE~Ek~~ 199 (207)
...+.++...||++|.+.-.++-++++..
T Consensus 32 ~~~~~~~W~~l~~~~k~~y~~~a~~~~~~ 60 (66)
T cd00084 32 SKILGEMWKSLSEEEKKKYEEKAEKDKER 60 (66)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 46788899999999999999888876543
No 58
>cd03381 PAP2_glucose_6_phosphatase PAP2_like proteins, glucose-6-phosphatase subfamily. Glucose-6-phosphatase converts glucose-6-phosphate into free glucose and is active in the lumen of the endoplasmic reticulum, where it is bound to the membrane. The generation of free glucose is an important control point in metabolism, and stands at the end of gluconeogenesis and the release of glucose from glycogen. Deficiency of glucose-6-phosphatase leads to von Gierke's disease.
Probab=44.02 E-value=26 Score=30.77 Aligned_cols=32 Identities=28% Similarity=0.238 Sum_probs=27.2
Q ss_pred cchhhhhhhHHHHHHHHHHHHhhHHhCCCccc
Q 028601 99 TRKDVLLIGVGVTVIGYGLKSGLELFGVDPLQ 130 (207)
Q Consensus 99 tR~DVI~IGlgvfllGg~lY~gLq~~GlD~~~ 130 (207)
+++..+.+.+.++.+-.+.|.++..+|+|+..
T Consensus 160 ~~~~~~~~~~~l~~~a~~~y~~~~~~gvd~~w 191 (235)
T cd03381 160 SLKRYVLITFFLFGFALGFYLLLKWLGVDLLW 191 (235)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhCCCchh
Confidence 56677888888888888889999999999974
No 59
>PF10550 Toxin_36: Conantokin-G mollusc-toxin; InterPro: IPR005918 The conantokins are a family of neuroactive peptides found in the venoms of fish-hunting cone snails. They possess a relatively high number of residues (4-5) of the non-standard amino acid gamma-carboxyglutamic acid (Gla), which is generated by the post-translational modification of glutamate (Glu) residues. Conantokins are the only naturally produced peptides known to be N-methyl-D-aspartate (NMDA) receptor antagonists and show therapeutic promise in treating conditions associated with NMDA receptor dysfunction. In animal models they have exhibited anticonvulsant and anti-Parkinsonian properties and have provided neuroprotection within therapeutically acceptable times following transient focal brain ischemia [, , , ]. Upon binding of Ca2+ to Gla, conantokin undergoes a conformational transition from a distorted curvilinear 3(10) helix to a linear alpha-helix. The binding of Ca2+ to conantokin leads to the exposure of a hydrophobic region on the opposite face of the helix []. Conantokins share relatively few sequence elements, which include include sequence identity at the first four residues, homologous positioning of the two most C-terminal Gla residues, and an Arg preceding the most C-terminal Gla []. The conantokin family is currently known to include: Conotoxin G from Conus geographus (Geography cone) (Nubecula geographus). Conantokin-L from Conus lynceus (Lynceus cone). Conantokin-R from Conus radiatus (Rayed cone). Conantokin-T from Conus tulipa (Fish-hunting cone snail) (Tulip cone). ; PDB: 1ONT_A.
Probab=43.99 E-value=28 Score=19.70 Aligned_cols=14 Identities=21% Similarity=0.432 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHH
Q 028601 183 EAELEALIEQVEEE 196 (207)
Q Consensus 183 pEEle~L~aEIE~E 196 (207)
+||.+++.+++..|
T Consensus 2 eee~~km~~~lare 15 (15)
T PF10550_consen 2 EEEVAKMAAELARE 15 (15)
T ss_dssp HHHHHHHHHHH-HH
T ss_pred hHHHHHHHHHHhcC
Confidence 68999999988654
No 60
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=43.98 E-value=13 Score=31.13 Aligned_cols=12 Identities=33% Similarity=0.534 Sum_probs=6.0
Q ss_pred hhhheeeeeeee
Q 028601 143 LTLGWVSTYIFR 154 (207)
Q Consensus 143 lvVgWv~SYLfR 154 (207)
++||+++.|+++
T Consensus 10 ~~vG~~~G~~~~ 21 (201)
T PF12072_consen 10 LIVGIGIGYLVR 21 (201)
T ss_pred HHHHHHHHHHHH
Confidence 445555555553
No 61
>PF07895 DUF1673: Protein of unknown function (DUF1673); InterPro: IPR012874 This family contains hypothetical proteins of unknown function found in Methanosarcina acetivorans and Methanosarcina mazei.
Probab=43.91 E-value=41 Score=28.78 Aligned_cols=53 Identities=26% Similarity=0.428 Sum_probs=27.4
Q ss_pred hhhhhhhHHHHHHHHHHHHhhHHhCCCcccchhHHHHHHHhhhhhheeeeeeeeeecCCccHHHHHHHHHH
Q 028601 101 KDVLLIGVGVTVIGYGLKSGLELFGVDPLQAGNVVEVIVVLGLTLGWVSTYIFRVSNKEMTYAQQLRDYED 171 (207)
Q Consensus 101 ~DVI~IGlgvfllGg~lY~gLq~~GlD~~~AGiwsQ~lLVlGlvVgWv~SYLfRV~tk~MTY~qQ~kdYE~ 171 (207)
...+++...++++= ++...+..+... ..|++|+.+. +..|++. +.+|.++|++
T Consensus 57 ~~~Ll~~~f~T~~~-~L~i~~~gin~~---------~~ll~g~~~~-L~~~i~~-------wk~~~~~~d~ 109 (205)
T PF07895_consen 57 NRILLINIFFTLVY-FLVISQLGINLH---------LFLLAGLILS-LYLYIFS-------WKKQMIRYDD 109 (205)
T ss_pred ceeeHHHHHHHHHH-HHHHHHHHHHHH---------HHHHHHHHHH-HHHHHHH-------HHHHHHHHHH
Confidence 34555555554433 233333333332 3344444444 5555555 8899999984
No 62
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=43.01 E-value=39 Score=30.04 Aligned_cols=45 Identities=24% Similarity=0.444 Sum_probs=29.2
Q ss_pred eecCCccHHHHHHHHH--------HHHHHHHHhcCC---------HHHHHHHHHHHHHHHhc
Q 028601 155 VSNKEMTYAQQLRDYE--------DKVMQKRLEGLT---------EAELEALIEQVEEEKRR 199 (207)
Q Consensus 155 V~tk~MTY~qQ~kdYE--------~avLQKRleeLt---------pEEle~L~aEIE~Ek~~ 199 (207)
|+..=|||..++..++ ++.+++.++.-+ .||+++|.+|+++.+.+
T Consensus 112 vI~R~~~ll~~l~~l~~~~~~~~~~~~lk~~~~~~~~~~~~~~~~~~~~~kL~~el~~~~~~ 173 (216)
T KOG1962|consen 112 VIRRLHTLLRELATLRANEKAMKENEALKKQLENSSKLEEENDKLKADLEKLETELEKKQKK 173 (216)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhhhcccchhhhHHHHHhhHHHHHHHHHHHHHH
Confidence 4556678888888877 355666666654 35667777777764443
No 63
>COG1026 Predicted Zn-dependent peptidases, insulinase-like [General function prediction only]
Probab=42.81 E-value=63 Score=34.47 Aligned_cols=49 Identities=27% Similarity=0.411 Sum_probs=42.3
Q ss_pred eeeeeecCCccHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 028601 151 YIFRVSNKEMTYAQQLRDYEDKVMQKRLEGLTEAELEALIEQVEEEKRR 199 (207)
Q Consensus 151 YLfRV~tk~MTY~qQ~kdYE~avLQKRleeLtpEEle~L~aEIE~Ek~~ 199 (207)
|+.=.+.-+-++.+|+++=|...|++|=.+|++|++++|.++..+-+..
T Consensus 450 ~~~v~~~Ps~~~~~~~ekee~e~L~~~~~~l~de~~~ki~~~~~~lke~ 498 (978)
T COG1026 450 YVTVIVLPSPELEEKLEKEERELLQKRSSELTDEDLEKIIKDSKKLKER 498 (978)
T ss_pred cEEEEEecChHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHh
Confidence 5555677788999999999999999999999999999999999874433
No 64
>PF04855 SNF5: SNF5 / SMARCB1 / INI1; InterPro: IPR006939 SNF5 is a component of the yeast SWI/SNF complex, which is an ATP-dependent nucleosome-remodelling complex that regulates the transcription of a subset of yeast genes. SNF5 is a key component of all SWI/SNF-class complexes characterised so far []. This family consists of the conserved region of SNF5, including a direct repeat motif. SNF5 is essential for the assembly promoter targeting and chromatin remodelling activity of the SWI-SNF complex []. SNF5 is also known as SMARCB1, for SWI/SNF-related, matrix-associated, actin-dependent regulator of chromatin, subfamily b, member 1, and also INI1 for integrase interactor 1. Loss-of function mutations in SNF5 are thought to contribute to oncogenesis in malignant rhabdoid tumours (MRTs) [].; GO: 0006338 chromatin remodeling, 0000228 nuclear chromosome
Probab=42.78 E-value=19 Score=31.76 Aligned_cols=26 Identities=31% Similarity=0.337 Sum_probs=20.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHH
Q 028601 171 DKVMQKRLEGLTEAELEALIEQVEEE 196 (207)
Q Consensus 171 ~avLQKRleeLtpEEle~L~aEIE~E 196 (207)
.+.-.=+++.||+||+|++..|-|.+
T Consensus 217 ~~~w~P~le~Ls~eEier~e~ereR~ 242 (244)
T PF04855_consen 217 ADEWTPRLEELSPEEIERREKERERE 242 (244)
T ss_pred hhhcCCchhhCCHHHHHHHHHHhhhh
Confidence 44456789999999999998877654
No 65
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=42.51 E-value=25 Score=26.61 Aligned_cols=21 Identities=33% Similarity=0.352 Sum_probs=14.7
Q ss_pred hhhhhhhHHHHHHHHHHHHhh
Q 028601 101 KDVLLIGVGVTVIGYGLKSGL 121 (207)
Q Consensus 101 ~DVI~IGlgvfllGg~lY~gL 121 (207)
.|.|+|++.|.+.|+++|...
T Consensus 3 ~d~iLi~ICVaii~lIlY~iY 23 (68)
T PF05961_consen 3 GDFILIIICVAIIGLILYGIY 23 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 467777777777777666553
No 66
>PRK09706 transcriptional repressor DicA; Reviewed
Probab=42.51 E-value=47 Score=25.63 Aligned_cols=25 Identities=20% Similarity=0.383 Sum_probs=22.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Q 028601 171 DKVMQKRLEGLTEAELEALIEQVEE 195 (207)
Q Consensus 171 ~avLQKRleeLtpEEle~L~aEIE~ 195 (207)
+..|-..|++|||++++++++.++.
T Consensus 89 ~~~ll~~~~~L~~~~~~~~l~~l~~ 113 (135)
T PRK09706 89 QKELLELFDALPESEQDAQLSEMRA 113 (135)
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHH
Confidence 5678899999999999999998875
No 67
>smart00398 HMG high mobility group.
Probab=40.71 E-value=1e+02 Score=20.05 Aligned_cols=28 Identities=25% Similarity=0.334 Sum_probs=22.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHh
Q 028601 171 DKVMQKRLEGLTEAELEALIEQVEEEKR 198 (207)
Q Consensus 171 ~avLQKRleeLtpEEle~L~aEIE~Ek~ 198 (207)
...+.++..+||++|.+...+.-++++.
T Consensus 33 ~~~~~~~W~~l~~~ek~~y~~~a~~~~~ 60 (70)
T smart00398 33 SKKLGERWKLLSEEEKAPYEEKAKKDKE 60 (70)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 4567889999999999999888777654
No 68
>PRK00306 50S ribosomal protein L29; Reviewed
Probab=40.65 E-value=37 Score=24.19 Aligned_cols=22 Identities=27% Similarity=0.374 Sum_probs=17.7
Q ss_pred HHHhcCCHHHHHHHHHHHHHHH
Q 028601 176 KRLEGLTEAELEALIEQVEEEK 197 (207)
Q Consensus 176 KRleeLtpEEle~L~aEIE~Ek 197 (207)
+-+.+||++|+++...++.+|=
T Consensus 4 ~elr~ls~~eL~~~l~~lkkeL 25 (66)
T PRK00306 4 KELRELSVEELNEKLLELKKEL 25 (66)
T ss_pred HHHhhCCHHHHHHHHHHHHHHH
Confidence 3577899999999988888753
No 69
>PF13902 R3H-assoc: R3H-associated N-terminal domain
Probab=40.24 E-value=51 Score=25.82 Aligned_cols=39 Identities=21% Similarity=0.481 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccc
Q 028601 162 YAQQLRDYEDKVMQKRLEGLTEAELEALIEQVEEEKRRLA 201 (207)
Q Consensus 162 Y~qQ~kdYE~avLQKRleeLtpEEle~L~aEIE~Ek~~~~ 201 (207)
| ++.-+|+.+.+=..|=+.++||++++++..+++.....
T Consensus 63 F-~~~~~~~~~~~Wd~f~~~~~eeQ~~~l~~~~~~~~~~~ 101 (131)
T PF13902_consen 63 F-ELCSDYQNAQLWDDFRNIDEEEQERLLEKLEKKEKKRK 101 (131)
T ss_pred H-HHhccHHHHHHHHHHhhcCHHHHHHHHHHhhhcccccc
Confidence 5 66677777777778888999999999999888655444
No 70
>PTZ00246 proteasome subunit alpha; Provisional
Probab=39.29 E-value=24 Score=30.07 Aligned_cols=23 Identities=26% Similarity=0.385 Sum_probs=19.5
Q ss_pred HhcCCHHHHHHHHHHHHHHHhcc
Q 028601 178 LEGLTEAELEALIEQVEEEKRRL 200 (207)
Q Consensus 178 leeLtpEEle~L~aEIE~Ek~~~ 200 (207)
|..|+|||++++++++++++...
T Consensus 226 ~~~l~~~ei~~~l~~~~~~~~~~ 248 (253)
T PTZ00246 226 QKMLSEKEIAELLKKVTQEYAKE 248 (253)
T ss_pred eEECCHHHHHHHHHHHhhhhhhh
Confidence 67899999999999999887443
No 71
>PF09991 DUF2232: Predicted membrane protein (DUF2232); InterPro: IPR018710 This family of bacterial and eukaryotic proteins has no known fucntion; however this signature belongs to a Pfam Gx transporter clan.
Probab=38.99 E-value=1.6e+02 Score=24.39 Aligned_cols=17 Identities=18% Similarity=0.483 Sum_probs=12.6
Q ss_pred cCCHHHHHHHHHHHHHH
Q 028601 180 GLTEAELEALIEQVEEE 196 (207)
Q Consensus 180 eLtpEEle~L~aEIE~E 196 (207)
++|+|+.+++++.+++.
T Consensus 137 g~~~~~~~~~~~~~~~~ 153 (290)
T PF09991_consen 137 GLPQDQVDQLQKNLQQI 153 (290)
T ss_pred CCCchhHHHHHHHHHHH
Confidence 56888887777777765
No 72
>PRK09848 glucuronide transporter; Provisional
Probab=38.05 E-value=1.6e+02 Score=25.82 Aligned_cols=19 Identities=16% Similarity=0.532 Sum_probs=14.6
Q ss_pred cCCHHHHHHHHHHHHHHHh
Q 028601 180 GLTEAELEALIEQVEEEKR 198 (207)
Q Consensus 180 eLtpEEle~L~aEIE~Ek~ 198 (207)
.|++|+.+++++|+++.+.
T Consensus 428 ~l~~~~~~~~~~~l~~~~~ 446 (448)
T PRK09848 428 PLTDKKFKEIVVEIDNRKK 446 (448)
T ss_pred eCCHHHHHHHHHHHHHhhh
Confidence 5777888888888887553
No 73
>KOG2224 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=37.57 E-value=35 Score=34.47 Aligned_cols=42 Identities=26% Similarity=0.478 Sum_probs=29.9
Q ss_pred eeeeeecCCccHH-------HHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 028601 151 YIFRVSNKEMTYA-------QQLRDYEDKVMQKRLEGLTEAELEALIEQV 193 (207)
Q Consensus 151 YLfRV~tk~MTY~-------qQ~kdYE~avLQKRleeLtpEEle~L~aEI 193 (207)
+|.|--+-.-||- +-||.||+ .-||||-+|||||..+.-+-|
T Consensus 447 fllk~ys~est~edr~al~~~krkey~e-iqqkrlysmspeeh~~fwknv 495 (781)
T KOG2224|consen 447 FLLKCYSFESTFEDRAALMDIKRKEYEE-IQQKRLYSMSPEEHIAFWKNV 495 (781)
T ss_pred HHHHHhccccchhHHHHHHHHHHHHHHH-HHHHHhhcCCHHHHHHHHhhe
Confidence 4555555566653 45677775 459999999999998876654
No 74
>PF09972 DUF2207: Predicted membrane protein (DUF2207); InterPro: IPR018702 This domain has no known function.
Probab=37.09 E-value=42 Score=29.74 Aligned_cols=16 Identities=19% Similarity=0.644 Sum_probs=8.1
Q ss_pred hhhhhHHHHHHHHHHH
Q 028601 103 VLLIGVGVTVIGYGLK 118 (207)
Q Consensus 103 VI~IGlgvfllGg~lY 118 (207)
.+.++++++++++++.
T Consensus 400 ~~~~~~i~~i~~~~~~ 415 (511)
T PF09972_consen 400 LIILGIILLILGFILL 415 (511)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4455555555554444
No 75
>PF01638 HxlR: HxlR-like helix-turn-helix; InterPro: IPR002577 The hxlR-type HTH domain is a domain of ~90-100 amino acids present in putative transcription regulators with a winged helix-turn-helix (wHTH) structure. The domain is named after Bacillus subtilis hxlR, a transcription activator of the hxlAB operon involved in the detoxification of formaldehyde []. The hxlR-type domain forms the core of putative transcription regulators and of hypothetical proteins occurring in eubacteria as well as in archaea. The sequence and structure of hxlR-type proteins show similarities with the marR-type wHTH []. The crystal structure of ytfH resembles the DNA-binding domains of winged helix proteins, containing a three helix (H) bundle and a three-stranded antiparallel beta-sheet (B) in the topology: H1-H2-B1-H3-H4-B2-B3-H5-H6. This topology corresponds with that of the marR-type DNA-binding domain, wherein helices 3 and 4 comprise the helix-turn-helix motif and the beta-sheet is called the wing. ; PDB: 2F2E_B 3DF8_A 1Z7U_B 1YYV_A 4A5M_D 4A5N_B 2FSW_A 2HZT_D.
Probab=36.41 E-value=19 Score=26.19 Aligned_cols=41 Identities=22% Similarity=0.490 Sum_probs=31.3
Q ss_pred eeeeeeeeeecCCccHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 028601 147 WVSTYIFRVSNKEMTYAQQLRDYEDKVMQKRLEGLTEAELEALIEQVEEE 196 (207)
Q Consensus 147 Wv~SYLfRV~tk~MTY~qQ~kdYE~avLQKRleeLtpEEle~L~aEIE~E 196 (207)
|...-|..+..+.|+|++ |+++++.+|+.-|.+-++++++.
T Consensus 6 W~~~IL~~l~~g~~rf~e---------l~~~l~~is~~~L~~~L~~L~~~ 46 (90)
T PF01638_consen 6 WTLLILRALFQGPMRFSE---------LQRRLPGISPKVLSQRLKELEEA 46 (90)
T ss_dssp THHHHHHHHTTSSEEHHH---------HHHHSTTS-HHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHhCCCcHHH---------HHHhcchhHHHHHHHHHHHHHHc
Confidence 555555566778999875 78889999999998888888873
No 76
>PF11239 DUF3040: Protein of unknown function (DUF3040); InterPro: IPR021401 Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed.
Probab=36.28 E-value=35 Score=24.94 Aligned_cols=16 Identities=31% Similarity=0.497 Sum_probs=12.0
Q ss_pred cCCHHHHHHHHHHHHHH
Q 028601 180 GLTEAELEALIEQVEEE 196 (207)
Q Consensus 180 eLtpEEle~L~aEIE~E 196 (207)
.||++|+. .++|||++
T Consensus 2 ~LSe~E~r-~L~eiEr~ 17 (82)
T PF11239_consen 2 PLSEHEQR-RLEEIERQ 17 (82)
T ss_pred CCCHHHHH-HHHHHHHH
Confidence 47889977 66788873
No 77
>PF00645 zf-PARP: Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region; InterPro: IPR001510 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents PARP (Poly(ADP) polymerase) type zinc finger domains. NAD(+) ADP-ribosyltransferase(2.4.2.30 from EC) [, ] is a eukaryotic enzyme that catalyses the covalent attachment of ADP-ribose units from NAD(+) to various nuclear acceptor proteins. This post-translational modification of nuclear proteins is dependent on DNA. It appears to be involved in the regulation of various important cellular processes such as differentiation, proliferation and tumour transformation as well as in the regulation of the molecular events involved in the recovery of the cell from DNA damage. Structurally, NAD(+) ADP-ribosyltransferase consists of three distinct domains: an N-terminal zinc-dependent DNA-binding domain, a central automodification domain and a C-terminal NAD-binding domain. The DNA-binding region contains a pair of PARP-type zinc finger domains which have been shown to bind DNA in a zinc-dependent manner. The PARP-type zinc finger domains seem to bind specifically to single-stranded DNA and to act as a DNA nick sensor. DNA ligase III [] contains, in its N-terminal section, a single copy of a zinc finger highly similar to those of PARP. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding, 0008270 zinc ion binding; PDB: 1UW0_A 3OD8_D 3ODA_A 4AV1_A 2DMJ_A 4DQY_D 2L30_A 2CS2_A 2L31_A 3ODE_B ....
Probab=35.36 E-value=21 Score=25.45 Aligned_cols=18 Identities=17% Similarity=0.326 Sum_probs=13.1
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 028601 177 RLEGLTEAELEALIEQVE 194 (207)
Q Consensus 177 RleeLtpEEle~L~aEIE 194 (207)
-|++|++|+++++++.||
T Consensus 65 G~~~L~~~Dq~~i~~~i~ 82 (82)
T PF00645_consen 65 GFDELKPEDQEKIRKLIE 82 (82)
T ss_dssp TCCCS-HHHHHHHHHHHS
T ss_pred ChHHCCHHHHHHHHHHhC
Confidence 367888888888887765
No 78
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=35.09 E-value=50 Score=26.94 Aligned_cols=47 Identities=15% Similarity=0.033 Sum_probs=27.2
Q ss_pred HHHHHHHHHHhhHHhCCCcccchhHHHHHHHhhhhhheeeeee-eeeecCCccHHHHHHHHH
Q 028601 110 VTVIGYGLKSGLELFGVDPLQAGNVVEVIVVLGLTLGWVSTYI-FRVSNKEMTYAQQLRDYE 170 (207)
Q Consensus 110 vfllGg~lY~gLq~~GlD~~~AGiwsQ~lLVlGlvVgWv~SYL-fRV~tk~MTY~qQ~kdYE 170 (207)
+|++|. +.|+|.. -++.|++-++ ++.|+..|+ |+-+ +-++++|+++=
T Consensus 7 ~~~~~~-------~~~~~~~--t~~~~iInFl--iL~~lL~~~l~~pi---~~~l~~R~~~I 54 (173)
T PRK13453 7 LFVLGA-------AGGVEWG--TVIVTVLTFI--VLLALLKKFAWGPL---KDVMDKRERDI 54 (173)
T ss_pred HHHHHh-------hcCCCHH--HHHHHHHHHH--HHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 566663 4577743 2445666666 366776554 3433 34677777765
No 79
>COG2863 Cytochrome c553 [Energy production and conversion]
Probab=35.01 E-value=60 Score=26.52 Aligned_cols=35 Identities=26% Similarity=0.468 Sum_probs=30.1
Q ss_pred HHHHHHHH-----HHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 028601 163 AQQLRDYE-----DKVMQKRLEGLTEAELEALIEQVEEEK 197 (207)
Q Consensus 163 ~qQ~kdYE-----~avLQKRleeLtpEEle~L~aEIE~Ek 197 (207)
-+|+++|+ .-+|......|++|+++.|-+=++..+
T Consensus 62 ~~~L~a~k~g~r~~~vM~~~a~~LsD~Di~~lAa~~a~~~ 101 (121)
T COG2863 62 EKQLKAYKDGKRPGPVMNAIASGLSDEDIADLAAYYAAQK 101 (121)
T ss_pred HHHHHHHHcCCCCcchHHHHHHhCCHHHHHHHHHHHHhCC
Confidence 36899999 568999999999999999988887643
No 80
>COG1896 Predicted hydrolases of HD superfamily [General function prediction only]
Probab=34.41 E-value=45 Score=28.29 Aligned_cols=40 Identities=13% Similarity=0.164 Sum_probs=30.7
Q ss_pred eeecCCcc---------HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 028601 154 RVSNKEMT---------YAQQLRDYEDKVMQKRLEGLTEAELEALIEQVEE 195 (207)
Q Consensus 154 RV~tk~MT---------Y~qQ~kdYE~avLQKRleeLtpEEle~L~aEIE~ 195 (207)
=+++|+|+ +.+..+..+++..+.++.. |+|+..+-.|.++
T Consensus 75 E~~~GDi~tp~k~~~~~~~~~~~e~e~~~~~~~~~~--p~e~~~~~~~~~~ 123 (193)
T COG1896 75 EALTGDIPTPVKYARAGLYKEEEEAEEAAIHLLFGL--PEELLELFREYEK 123 (193)
T ss_pred HHHhCCCCCchhhhcchHHHHHHHHHHHHHHcccCC--cHHHHHHHHHHHc
Confidence 34678888 3455555667888888877 9999999999987
No 81
>KOG4171 consensus Adenylate/guanylate kinase [Nucleotide transport and metabolism]
Probab=34.27 E-value=39 Score=34.59 Aligned_cols=28 Identities=32% Similarity=0.528 Sum_probs=25.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 028601 171 DKVMQKRLEGLTEAELEALIEQVEEEKRR 199 (207)
Q Consensus 171 ~avLQKRleeLtpEEle~L~aEIE~Ek~~ 199 (207)
+..|-+++|++ .|+||+..+++|+||++
T Consensus 385 q~el~~~lE~~-~~~Le~~~~~Le~EKkk 412 (671)
T KOG4171|consen 385 QLELNLELEKL-KEKLEKMTRELEEEKKK 412 (671)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHhh
Confidence 56788999999 99999999999999875
No 82
>PRK12585 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=34.08 E-value=62 Score=28.69 Aligned_cols=16 Identities=25% Similarity=0.409 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHH
Q 028601 162 YAQQLRDYEDKVMQKR 177 (207)
Q Consensus 162 Y~qQ~kdYE~avLQKR 177 (207)
-..|++.|++..+.+|
T Consensus 103 ~~d~~~~~~k~~~~~~ 118 (197)
T PRK12585 103 IRDQLRSVKKDDIKKK 118 (197)
T ss_pred hHHHHHHHHhhhhhhc
Confidence 3468888885544433
No 83
>PRK06474 hypothetical protein; Provisional
Probab=34.04 E-value=43 Score=27.71 Aligned_cols=15 Identities=33% Similarity=0.558 Sum_probs=14.1
Q ss_pred CCHHHHHHHHHHHHH
Q 028601 181 LTEAELEALIEQVEE 195 (207)
Q Consensus 181 LtpEEle~L~aEIE~ 195 (207)
|||||++.|++|+.+
T Consensus 136 Lt~ee~~el~~el~~ 150 (178)
T PRK06474 136 LDEEEFEEFQSELNE 150 (178)
T ss_pred cCHHHHHHHHHHHHH
Confidence 899999999999987
No 84
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=33.45 E-value=39 Score=33.24 Aligned_cols=28 Identities=18% Similarity=0.176 Sum_probs=16.8
Q ss_pred eecCCccHHHHHHHHH-----HHHHHHHHhcCC
Q 028601 155 VSNKEMTYAQQLRDYE-----DKVMQKRLEGLT 182 (207)
Q Consensus 155 V~tk~MTY~qQ~kdYE-----~avLQKRleeLt 182 (207)
|+|..++=+-+....+ .++|||+|++|.
T Consensus 57 vV~~~FddkVnqSALteqQ~kasELEKqLaaLr 89 (475)
T PRK13729 57 VVDTTFDDKVRQHATTEMQVTAAQMQKQYEEIR 89 (475)
T ss_pred eecchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566665555544444 456778887774
No 85
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=33.36 E-value=68 Score=24.84 Aligned_cols=38 Identities=24% Similarity=0.277 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccccCC
Q 028601 167 RDYEDKVMQKRLEGLTEAELEALIEQVEEEKRRLASGE 204 (207)
Q Consensus 167 kdYE~avLQKRleeLtpEEle~L~aEIE~Ek~~~~~~~ 204 (207)
+|-|...-+-|-++||||..+.|.+|.+.-+.....+|
T Consensus 19 ~~le~ve~rL~~~eLs~e~R~~lE~E~~~l~~~l~~~E 56 (85)
T PF15188_consen 19 RRLEAVESRLRRRELSPEARRSLEKELNELKEKLENNE 56 (85)
T ss_pred HHHHHHHHHHcccCCChHHHHHHHHHHHHHHHHhhccH
Confidence 33334444555679999999999988887665554443
No 86
>smart00347 HTH_MARR helix_turn_helix multiple antibiotic resistance protein.
Probab=33.35 E-value=1e+02 Score=20.93 Aligned_cols=88 Identities=22% Similarity=0.291 Sum_probs=52.5
Q ss_pred CCccccchhhhhhhHHHHHHHHHHHH-hhHHhCCCcccchhHHHHHHHhhhhhheeeee---------eeeeecCCccHH
Q 028601 94 TPFGYTRKDVLLIGVGVTVIGYGLKS-GLELFGVDPLQAGNVVEVIVVLGLTLGWVSTY---------IFRVSNKEMTYA 163 (207)
Q Consensus 94 ~pFgMtR~DVI~IGlgvfllGg~lY~-gLq~~GlD~~~AGiwsQ~lLVlGlvVgWv~SY---------LfRV~tk~MTY~ 163 (207)
..||++..+...+-+..- .|..-.. .-+.++++..+ ++..+=-+ .=-+|+-.+ .+++-.+-..+.
T Consensus 4 ~~~~l~~~~~~il~~l~~-~~~~~~~~la~~~~~s~~~---i~~~l~~L-~~~g~v~~~~~~~~~r~~~~~lT~~g~~~~ 78 (101)
T smart00347 4 KPLGLTPTQFLVLRILYE-EGPLSVSELAKRLGVSPST---VTRVLDRL-EKKGLIRRLPSPEDRRSVLVSLTEEGRELI 78 (101)
T ss_pred cccCCCHHHHHHHHHHHH-cCCcCHHHHHHHHCCCchh---HHHHHHHH-HHCCCeEecCCCCCCCeEEEEECHhHHHHH
Confidence 567888777665554442 2322222 23566766544 44444333 224555433 455555667788
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHH
Q 028601 164 QQLRDYEDKVMQKRLEGLTEAEL 186 (207)
Q Consensus 164 qQ~kdYE~avLQKRleeLtpEEl 186 (207)
++.++--....+..++.++++|+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~e~ 101 (101)
T smart00347 79 EELLEARHETLAELLAGLTAEEQ 101 (101)
T ss_pred HHHHHHHHHHHHHHHhcCCcccC
Confidence 88888888888888899988873
No 87
>cd00427 Ribosomal_L29_HIP Ribosomal L29 protein/HIP. L29 is a protein of the large ribosomal Subunit. A homolog, called heparin/heparan sulfate interacting protein (HIP), has also been identified in mammals. L29 is located on the surface of the large ribosomal subunit, where it participates in forming a protein ring that surrounds the polypeptide exit channel, providing structural support for the ribosome. L29 is involved in forming the translocon binding site, along with L19, L22, L23, L24, and L31e. In addition, L29 and L23 form the interaction site for trigger factor (TF) on the ribosomal surface, adjacent to the exit tunnel. L29 forms numerous interactions with L23 and with the 23S rRNA. In some eukaryotes, L29 is referred to as L35, which is distinct from L35 found in bacteria and some eukaryotes (primarily plastids and mitochondria). The mammalian homolog, HIP, is found on the surface of many tissues and cell lines. It is believed to play a role in cell adhesion and modulat
Probab=33.25 E-value=48 Score=22.96 Aligned_cols=20 Identities=20% Similarity=0.431 Sum_probs=16.0
Q ss_pred HhcCCHHHHHHHHHHHHHHH
Q 028601 178 LEGLTEAELEALIEQVEEEK 197 (207)
Q Consensus 178 leeLtpEEle~L~aEIE~Ek 197 (207)
+.+||++|+++.+.++.+|-
T Consensus 3 ir~ls~~eL~~~l~~l~~el 22 (57)
T cd00427 3 LREKSDEELQEKLDELKKEL 22 (57)
T ss_pred HHHCCHHHHHHHHHHHHHHH
Confidence 66899999998888887653
No 88
>PRK14748 kdpF potassium-transporting ATPase subunit F; Provisional
Probab=32.72 E-value=51 Score=21.48 Aligned_cols=25 Identities=8% Similarity=0.066 Sum_probs=17.6
Q ss_pred ccchhhhhhhHHHHHHHHHHHHhhH
Q 028601 98 YTRKDVLLIGVGVTVIGYGLKSGLE 122 (207)
Q Consensus 98 MtR~DVI~IGlgvfllGg~lY~gLq 122 (207)
|+-.-+.+|-+.+.++|++.|..+.
T Consensus 1 Ms~~vi~G~ilv~lLlgYLvyALi~ 25 (29)
T PRK14748 1 MSAGVITGVLLVFLLLGYLVYALIN 25 (29)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4445566777778888888887654
No 89
>PF06945 DUF1289: Protein of unknown function (DUF1289); InterPro: IPR010710 This family consists of a number of hypothetical bacterial proteins. The aligned region spans around 56 residues and contains 4 highly conserved cysteine residues towards the N terminus. The function of this family is unknown.
Probab=32.66 E-value=64 Score=22.09 Aligned_cols=23 Identities=9% Similarity=0.378 Sum_probs=19.3
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHh
Q 028601 176 KRLEGLTEAELEALIEQVEEEKR 198 (207)
Q Consensus 176 KRleeLtpEEle~L~aEIE~Ek~ 198 (207)
+.+..|+++|..++++++.+..+
T Consensus 28 ~~W~~~s~~er~~i~~~l~~R~~ 50 (51)
T PF06945_consen 28 RDWKSMSDDERRAILARLRARRA 50 (51)
T ss_pred HHHhhCCHHHHHHHHHHHHHHhc
Confidence 46778999999999999987654
No 90
>TIGR00012 L29 ribosomal protein L29. called L29 in prokaryotic (50S) large subunits and L35 in eukaryotic (60S) large subunits.
Probab=32.56 E-value=51 Score=22.80 Aligned_cols=19 Identities=21% Similarity=0.427 Sum_probs=15.7
Q ss_pred HhcCCHHHHHHHHHHHHHH
Q 028601 178 LEGLTEAELEALIEQVEEE 196 (207)
Q Consensus 178 leeLtpEEle~L~aEIE~E 196 (207)
+.+||.+|+++.+.|+.+|
T Consensus 2 lr~~s~~EL~~~l~~lr~e 20 (55)
T TIGR00012 2 LREKSKEELAKKLDELKKE 20 (55)
T ss_pred HhhCCHHHHHHHHHHHHHH
Confidence 5679999999988888775
No 91
>PLN02220 delta-9 acyl-lipid desaturase
Probab=32.42 E-value=74 Score=29.06 Aligned_cols=21 Identities=24% Similarity=0.355 Sum_probs=11.4
Q ss_pred CCCCCCCCCccc---cchhhhhhh
Q 028601 87 DSSDQTETPFGY---TRKDVLLIG 107 (207)
Q Consensus 87 ~~~~~~~~pFgM---tR~DVI~IG 107 (207)
.+...+|.+|.- ++.|++-+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~ 37 (299)
T PLN02220 14 KAVRKEKRAFFFRKWTRLDVVRAS 37 (299)
T ss_pred cccccccchhhhhccceehhHHHH
Confidence 344446666665 556655543
No 92
>PF09928 DUF2160: Predicted small integral membrane protein (DUF2160); InterPro: IPR018678 The members of this family of hypothetical prokaryotic proteins have no known function. It is thought that they are transmembrane proteins, but their function has not been inferred yet.
Probab=32.25 E-value=94 Score=24.53 Aligned_cols=33 Identities=24% Similarity=0.141 Sum_probs=23.1
Q ss_pred CCCccccchhhhhhhHHHHHHHHHHHHhhHHhCCCccc
Q 028601 93 ETPFGYTRKDVLLIGVGVTVIGYGLKSGLELFGVDPLQ 130 (207)
Q Consensus 93 ~~pFgMtR~DVI~IGlgvfllGg~lY~gLq~~GlD~~~ 130 (207)
-.|+--||+|-+-||+.. ..|.-|-.+|+-+.+
T Consensus 37 fLpi~TTRGDRLFIsLL~-----sA~I~L~Wlgl~~~~ 69 (88)
T PF09928_consen 37 FLPIETTRGDRLFISLLG-----SAFIHLAWLGLVGPS 69 (88)
T ss_pred eecccCCCcchhHHHHHH-----HHHHHHHHHHhcCcc
Confidence 378888999999999765 344445566665533
No 93
>PF01099 Uteroglobin: Uteroglobin family; InterPro: IPR006038 Uteroglobin (or blastokinin) is a mammalian steroid-inducible secreted protein originally isolated from the uterus of rabbits during early pregnancy. The mucosal epithelia of several organs that communicate with the external environment express uteroglobin. Its tissue-specific expression is regulated by steroid hormones, and is augmented in the uterus by non-steroidal prolactin. Uteroglobin may be a multi-functional protein with anti-inflammatory/immunomodulatory properties, acting to inhibit phospholipase A2 activity, and binding to (and possibly sequestering) several hydrophobic ligands such as progesterone, retinols, polychlorinated biphenyls, phospholipids and prostaglandins. In addition, uteroglobin has anti-chemotactic, anti-allergic, anti-tumourigenic and embryo growth-stimulatory properties. Uteroglobin may have a homeostatic role against oxidative damage, inflammation, autoimmunity and cancer [, , , ]. Uteroglobin consists of a disulphide-linked dimer of two identical polypeptides, each polypeptide being composed of four helices. It is a member of the secretoglobin superfamily. This entry represents uteroglobin proteins from several mammalian species, as well as other members of the secretoglobin superfamily, such as lipophilin B [], prostatic steroid-binding protein [], mammaglobin [], and the related allergen Fel d 1 (Felis domesticus allergen 1) [].; GO: 0005488 binding, 0005576 extracellular region; PDB: 1UTR_B 1CCD_A 1UTG_A 2UTG_A 1ZKR_B 1PUO_B 2EJN_B.
Probab=31.77 E-value=81 Score=22.30 Aligned_cols=34 Identities=18% Similarity=0.446 Sum_probs=25.0
Q ss_pred cHHHHHHHHH--------HHHHHHHHhcCCHHHHHHHHHHHH
Q 028601 161 TYAQQLRDYE--------DKVMQKRLEGLTEAELEALIEQVE 194 (207)
Q Consensus 161 TY~qQ~kdYE--------~avLQKRleeLtpEEle~L~aEIE 194 (207)
.|..+++.|. ...+.+-++.||+|.++....=++
T Consensus 18 ~Y~~~l~~y~~~~~~~~A~~~lK~C~d~ls~e~~~~i~~~l~ 59 (67)
T PF01099_consen 18 EYKESLQKYNPPPEAVEAKLELKQCVDKLSNETRENILKLLE 59 (67)
T ss_dssp HHHHHHHCC---HHHHHHHHHHHHHHTTS-HHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 5889999998 446778899999999887665444
No 94
>PF13858 DUF4199: Protein of unknown function (DUF4199)
Probab=31.74 E-value=1.4e+02 Score=23.23 Aligned_cols=18 Identities=11% Similarity=0.331 Sum_probs=8.9
Q ss_pred eeeeeeee--eecCCccHHH
Q 028601 147 WVSTYIFR--VSNKEMTYAQ 164 (207)
Q Consensus 147 Wv~SYLfR--V~tk~MTY~q 164 (207)
+.+..-+| ..++.|||.|
T Consensus 46 ~~~i~~~R~~~~~g~isf~~ 65 (163)
T PF13858_consen 46 YFAIRRYRKKYNGGFISFGQ 65 (163)
T ss_pred HHHHHHHHHHccCCCeeHHH
Confidence 34444444 3455666655
No 95
>COG5478 Predicted small integral membrane protein [Function unknown]
Probab=31.67 E-value=1.1e+02 Score=25.96 Aligned_cols=19 Identities=32% Similarity=0.557 Sum_probs=15.1
Q ss_pred hcCCHHHHHHHHHHHHHHH
Q 028601 179 EGLTEAELEALIEQVEEEK 197 (207)
Q Consensus 179 eeLtpEEle~L~aEIE~Ek 197 (207)
|.++|+|.+++.+-+|++-
T Consensus 98 Eh~~~~~i~~~~~~~e~~a 116 (141)
T COG5478 98 EHLKPEEIEEIRDRLEDEA 116 (141)
T ss_pred ccCCHHHHHHHHHHHHHHh
Confidence 4578999999988888754
No 96
>PRK05179 rpsM 30S ribosomal protein S13; Validated
Probab=31.24 E-value=35 Score=27.36 Aligned_cols=21 Identities=29% Similarity=0.645 Sum_probs=16.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 028601 175 QKRLEGLTEAELEALIEQVEE 195 (207)
Q Consensus 175 QKRleeLtpEEle~L~aEIE~ 195 (207)
.+|+.+|+++|+++|.+.|++
T Consensus 42 ~~~~~~L~~~qi~~l~~~i~~ 62 (122)
T PRK05179 42 DTRVKDLTDEELDKIREEIDK 62 (122)
T ss_pred ccccccCCHHHHHHHHHHHHh
Confidence 357788888888888888875
No 97
>KOG2568 consensus Predicted membrane protein [Function unknown]
Probab=31.15 E-value=55 Score=32.53 Aligned_cols=80 Identities=14% Similarity=0.079 Sum_probs=57.8
Q ss_pred cchhhhhhhHHHHHHHHHHHHhhHHhCCCcccchhHHHHHHH-hhhhhheeeeeeeeeecCCccHHHHHHHHHHHHHHHH
Q 028601 99 TRKDVLLIGVGVTVIGYGLKSGLELFGVDPLQAGNVVEVIVV-LGLTLGWVSTYIFRVSNKEMTYAQQLRDYEDKVMQKR 177 (207)
Q Consensus 99 tR~DVI~IGlgvfllGg~lY~gLq~~GlD~~~AGiwsQ~lLV-lGlvVgWv~SYLfRV~tk~MTY~qQ~kdYE~avLQKR 177 (207)
+=-.|++||++.|++- ......+..|-.+-.+|.|-+...+ +.++-.-..-.+|+-+++.|.+-+=+|++=+..|=|+
T Consensus 305 ~l~rv~~ig~~~~i~s-~i~~l~~~~g~~se~~~~~~lf~~ip~ai~d~~f~~wIF~SL~~Tlk~Lr~rRn~vKl~lYr~ 383 (518)
T KOG2568|consen 305 TLLRVCQIGVIYFIAS-EILGLARVIGNISELSSLLILFAALPLAILDAAFIYWIFISLAKTLKKLRLRRNIVKLSLYRK 383 (518)
T ss_pred HHHHHHHHhHHHHHHH-HHHHHHHHhcCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456889999998877 4555688999999999976554322 2222222223468899999999999999988888888
Q ss_pred Hh
Q 028601 178 LE 179 (207)
Q Consensus 178 le 179 (207)
|-
T Consensus 384 F~ 385 (518)
T KOG2568|consen 384 FT 385 (518)
T ss_pred HH
Confidence 74
No 98
>COG0255 RpmC Ribosomal protein L29 [Translation, ribosomal structure and biogenesis]
Probab=30.85 E-value=62 Score=24.06 Aligned_cols=21 Identities=29% Similarity=0.411 Sum_probs=17.6
Q ss_pred HHHhcCCHHHHHHHHHHHHHH
Q 028601 176 KRLEGLTEAELEALIEQVEEE 196 (207)
Q Consensus 176 KRleeLtpEEle~L~aEIE~E 196 (207)
+-|.+||+||+++.+.|+..|
T Consensus 6 ~elR~~s~eeL~~~l~eLK~E 26 (69)
T COG0255 6 KELREKSVEELEEELRELKKE 26 (69)
T ss_pred HHHHhCCHHHHHHHHHHHHHH
Confidence 457889999999999888775
No 99
>PHA03049 IMV membrane protein; Provisional
Probab=29.96 E-value=53 Score=24.94 Aligned_cols=20 Identities=25% Similarity=0.358 Sum_probs=11.6
Q ss_pred hhhhhhhHHHHHHHHHHHHh
Q 028601 101 KDVLLIGVGVTVIGYGLKSG 120 (207)
Q Consensus 101 ~DVI~IGlgvfllGg~lY~g 120 (207)
.|++++++.|-+.|.++|..
T Consensus 3 ~d~~l~iICVaIi~lIvYgi 22 (68)
T PHA03049 3 GDIILVIICVVIIGLIVYGI 22 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 35666666666666555543
No 100
>PF10742 DUF2555: Protein of unknown function (DUF2555); InterPro: IPR019678 This entry represents conserved proteins found in Cyanobacteria. The function is not known.
Probab=29.96 E-value=46 Score=24.41 Aligned_cols=23 Identities=26% Similarity=0.540 Sum_probs=20.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHH
Q 028601 175 QKRLEGLTEAELEALIEQVEEEK 197 (207)
Q Consensus 175 QKRleeLtpEEle~L~aEIE~Ek 197 (207)
++.+..+++|+.++|-+.+|++.
T Consensus 3 ~~~~~~~t~~~va~LA~RLE~Dd 25 (57)
T PF10742_consen 3 KEDLAAFTEEDVAKLAKRLEEDD 25 (57)
T ss_pred hhhHhhcCHHHHHHHHHhhhhcc
Confidence 57899999999999999999875
No 101
>PF10661 EssA: WXG100 protein secretion system (Wss), protein EssA; InterPro: IPR018920 The Wss (WXG100 protein secretion system) in Staphylococcus aureus seems to be encoded by a locus of eight ORFs, called ess (eSAT-6 secretion system) []. This locus encodes, amongst several other proteins, EssA, a protein predicted to possess one transmembrane domain. Due to its predicted membrane location and its absolute requirement for WXG100 protein secretion, it has been speculated that EssA could form a secretion apparatus in conjunction with YukC and YukAB. Proteins homologous to EssA, YukC, EsaA and YukD were absent from mycobacteria []. Members of this family are associated with type VII secretion of WXG100 family targets in the Firmicutes, but not in the Actinobacteria. This highly divergent protein family consists largely of a central region of highly polar low-complexity sequence containing occasional LF motifs in weak repeats about 17 residues in length, flanked by hydrophobic N- and C-terminal regions.
Probab=29.90 E-value=55 Score=26.98 Aligned_cols=18 Identities=28% Similarity=0.126 Sum_probs=13.3
Q ss_pred hhHHHHHHHHHHHHhhHH
Q 028601 106 IGVGVTVIGYGLKSGLEL 123 (207)
Q Consensus 106 IGlgvfllGg~lY~gLq~ 123 (207)
|+..|.++++++|+.++-
T Consensus 125 i~g~ll~i~~giy~~~r~ 142 (145)
T PF10661_consen 125 IGGILLAICGGIYVVLRK 142 (145)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 555666777899998874
No 102
>CHL00137 rps13 ribosomal protein S13; Validated
Probab=29.70 E-value=37 Score=27.27 Aligned_cols=21 Identities=38% Similarity=0.531 Sum_probs=16.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 028601 175 QKRLEGLTEAELEALIEQVEE 195 (207)
Q Consensus 175 QKRleeLtpEEle~L~aEIE~ 195 (207)
.+|+.+|+++|+++|.+.|++
T Consensus 42 ~~~~~~Lt~~qi~~l~~~i~~ 62 (122)
T CHL00137 42 DIRTKDLTDEQISALREIIEE 62 (122)
T ss_pred CcCcccCCHHHHHHHHHHHHH
Confidence 356778888888888888864
No 103
>COG2155 Uncharacterized conserved protein [Function unknown]
Probab=29.59 E-value=33 Score=26.54 Aligned_cols=58 Identities=19% Similarity=0.260 Sum_probs=41.9
Q ss_pred hhhhhhHHHHHHHHHHHHhhHHhCCCcc-----cchhHHHHHHH-hhhhhheeeeeeeeeecCC
Q 028601 102 DVLLIGVGVTVIGYGLKSGLELFGVDPL-----QAGNVVEVIVV-LGLTLGWVSTYIFRVSNKE 159 (207)
Q Consensus 102 DVI~IGlgvfllGg~lY~gLq~~GlD~~-----~AGiwsQ~lLV-lGlvVgWv~SYLfRV~tk~ 159 (207)
-.-.+.+.+.++|++=|...-.+++|=. +...|++++.+ +|+.=.|...++|++..++
T Consensus 5 ~i~~~sllLvIiGalNWGLvG~f~fdLvaalfG~gs~lsri~YiivGlagv~~il~l~k~~~~~ 68 (79)
T COG2155 5 IIRGLSLLLVILGALNWGLVGLFGFDLVAALFGVGSMLTRIIYIIVGLAGVYQILPLFKVCEKK 68 (79)
T ss_pred HHHHHHHHHHHHhhhhhceeeeehhhHHHHHHcCchHHHHHHHHHHHHHHHHHHHHhcchhhcc
Confidence 3446677777888776666667777743 35678888754 5777889999999987764
No 104
>CHL00154 rpl29 ribosomal protein L29; Validated
Probab=29.47 E-value=68 Score=23.42 Aligned_cols=21 Identities=24% Similarity=0.330 Sum_probs=16.9
Q ss_pred HHhcCCHHHHHHHHHHHHHHH
Q 028601 177 RLEGLTEAELEALIEQVEEEK 197 (207)
Q Consensus 177 RleeLtpEEle~L~aEIE~Ek 197 (207)
-+.+||++|+++.+.|+.+|-
T Consensus 8 elr~ls~~eL~~~l~elk~el 28 (67)
T CHL00154 8 DIIDLTDSEISEEIIKTKKEL 28 (67)
T ss_pred HHHhCCHHHHHHHHHHHHHHH
Confidence 467899999998888887764
No 105
>PHA02698 hypothetical protein; Provisional
Probab=29.40 E-value=76 Score=25.03 Aligned_cols=27 Identities=26% Similarity=0.446 Sum_probs=23.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 028601 170 EDKVMQKRLEGLTEAELEALIEQVEEE 196 (207)
Q Consensus 170 E~avLQKRleeLtpEEle~L~aEIE~E 196 (207)
|+-.++..+.-|+-||.+.|+.|+|+-
T Consensus 55 ediq~ksElqLLsqEEMdELl~Eledl 81 (89)
T PHA02698 55 EDIQYKSELQLLSQEEMDELLVELEDL 81 (89)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 466778888899999999999999874
No 106
>cd07321 Extradiol_Dioxygenase_3A_like Subunit A of Class III extradiol dioxygenases. Extradiol dioxygenases catalyze the incorporation of both atoms of molecular oxygen into substrates using a variety of reaction mechanisms, resulting in the cleavage of aromatic rings. There are two major groups of dioxygenases according to the cleavage site of the aromatic ring. Intradiol enzymes cleave the aromatic ring between two hydroxyl groups, whereas extradiol enzymes cleave the aromatic ring between a hydroxylated carbon and an adjacent non-hydroxylated carbon. Extradiol dioxygenases can be divided into three classes. Class I and II enzymes are evolutionary related and show sequence similarity, with the two domain class II enzymes evolving from the class I enzyme through gene duplication. Class III enzymes are different in sequence and structure and usually have two subunits, designated A and B, which form a tetramer composed of two copies of each subunit. This model represents subunit A of c
Probab=29.23 E-value=85 Score=23.13 Aligned_cols=25 Identities=28% Similarity=0.452 Sum_probs=18.3
Q ss_pred HHHHHH---HHHHHHHHhcCCHHHHHHHHH
Q 028601 165 QLRDYE---DKVMQKRLEGLTEAELEALIE 191 (207)
Q Consensus 165 Q~kdYE---~avLQKRleeLtpEEle~L~a 191 (207)
-|++|. ++++++- .|||||.++|.+
T Consensus 18 ~re~f~~dp~a~~~~~--~Lt~eE~~al~~ 45 (77)
T cd07321 18 VKERFKADPEAVLAEY--GLTPEEKAALLA 45 (77)
T ss_pred HHHHHHhCHHHHHHHc--CCCHHHHHHHHc
Confidence 455555 6777765 899999999864
No 107
>PF03047 ComC: COMC family; InterPro: IPR004288 Competence is the ability of a cell to take up exogenous DNA from its environment, resulting in transformation. It is widespread among bacteria and is probably an important mechanism for the horizontal transfer of genes. Cells that take up DNA inevitably acquire the nucleotides the DNA consists of, and, because nucleotides are needed for DNA and RNA synthesis and are expensive to synthesise, these may make a significant contribution to the cell's energy budget []. The lateral gene transfer caused by competence also contributes to the genetic diversity that makes evolution possible. DNA usually becomes available by the death and lysis of other cells. Competent bacteria use components of extracellular filaments called type 4 pili to create pores in their membranes and pull DNA through the pores into the cytoplasm. This process, including the development of competence and the expression of the uptake machinery, is regulated in response to cell-cell signalling and/or nutritional conditions []. This family consists of streptococcal competence stimulating peptide precursors, which are generally up to 50 amino acid residues long. In all the members of this family, the leader sequence is cleaved after two conserved glycine residues; thus the leader sequence is of the double- glycine type []. Competence stimulating peptides (CSP) are small (less than 25 amino acid residues) cationic peptides. The N-terminal amino acid residue is negatively charged, either glutamate or aspartate. The C-terminal end is positively charged. The third residue is also positively charged: a highly conserved arginine []. Some COMC proteins and their precursors (not included in this family) do not fully follow the above description. Functionally, CSP act as pheromones, stimulating competence for genetic transformation in streptococci. In streptococci, the (CSP mediated) competence response requires exponential cell growth at a critical density, a relatively simple requirement when compared to the stationary-phase requirement of Haemophilus, or the late-logarithmic- phase of Bacillus []. All bacteria induced to competence by a particular CSP are said to belong to the same pherotype, because each CSP is recognised by a specific receptor (the signalling domain of a histidine kinase ComD). Pherotypes are not necessarily species-specific. In addition, an organism may change pherotype. There are two possible mechanisms for pherotype switching: horizontal gene transfer, and accumulation of point mutations. The biological significance of pherotypes and pherotype switching is not definitively determined. Pherotype switching occurs frequently enough in naturally competent streptococci to suggest that it may be an important contributor to genetic exchange between different bacterial species []. This entry also includes proteins that form bacteriocin-like propetides with a glycine-glycine cleavage site. The bacteriocin is initially formed as a pre-propeptide and upon cleavage at the glycine-glycine cleavage site, a leader peptide and the propeptide would be formed. The propeptide then undergoes posttranslational modification before becoming functional [].; GO: 0005186 pheromone activity; PDB: 2I2J_A 2I2H_A 2A1C_A.
Probab=29.21 E-value=18 Score=23.47 Aligned_cols=15 Identities=40% Similarity=0.618 Sum_probs=0.0
Q ss_pred HHHhcCCHHHHHHHH
Q 028601 176 KRLEGLTEAELEALI 190 (207)
Q Consensus 176 KRleeLtpEEle~L~ 190 (207)
+.|++|+++||+...
T Consensus 9 ~~F~~lt~~eL~~I~ 23 (32)
T PF03047_consen 9 EQFEELTEEELQEIQ 23 (32)
T ss_dssp ---------------
T ss_pred HHHhcCCHHHHhhcc
Confidence 579999999998753
No 108
>PF02096 60KD_IMP: 60Kd inner membrane protein; InterPro: IPR001708 This family of proteins is required for the insertion of integral membrane proteins into cellular membranes. Many of these integral membrane proteins are associated with respiratory chain complexes, for example a large number of members of this family play an essential role in the activity and assembly of cytochrome c oxidase. Stage III sporulation protein J (SP3J) is a probable lipoprotein, rich in basic and hydrophobic amino acids. Mutations in the protein abolish the transcription of prespore-specific genes transcribed by the sigma G form of RNA polymerase []. SP3J could be involved in a signal transduction pathway coupling gene expression in the prespore to events in the mother cell, or it may be necessary for essential metabolic interactions between the two cells []. The protein shows a high degree of similarity to Bacillus subtilis YQJG, to yeast OXA1 and also to bacterial 60 kDa inner-membrane proteins [, , , ]. ; GO: 0051205 protein insertion into membrane, 0016021 integral to membrane
Probab=29.19 E-value=41 Score=27.27 Aligned_cols=44 Identities=14% Similarity=0.241 Sum_probs=27.8
Q ss_pred eeeeecCCccHHHHHHHHHHHHHHHHHhcCCH---HHHHHHHHHHHH
Q 028601 152 IFRVSNKEMTYAQQLRDYEDKVMQKRLEGLTE---AELEALIEQVEE 195 (207)
Q Consensus 152 LfRV~tk~MTY~qQ~kdYE~avLQKRleeLtp---EEle~L~aEIE~ 195 (207)
+.|++.=-.++.+|+..-+.+.++..++++.+ ++.+++++|+.+
T Consensus 13 ~vR~~~~Pl~i~~~~~~~k~~~~~P~l~~i~~k~~~~~~~~~~~~~~ 59 (198)
T PF02096_consen 13 LVRLILLPLSIKQQRSSAKMQELQPELKEIQEKYKEDQQKMQQEMQK 59 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 56777777888888888777777766665433 334444444443
No 109
>TIGR00787 dctP tripartite ATP-independent periplasmic transporter solute receptor, DctP family. TRAP-T (Tripartite ATP-independent Periplasmic Transporter) family proteins generally consist of three components, and these systems have so far been found in Gram-negative bacteria, Gram-postive bacteria and archaea. The best characterized example is the DctPQM system of Rhodobacter capsulatus, a C4 dicarboxylate (malate, fumarate, succinate) transporter. This model represents the DctP family, one of at least three major families of extracytoplasmic solute receptor for TRAP family transporters. Other are the SnoM family (see pfam03480) and TAXI (TRAP-associated extracytoplasmic immunogenic) family.
Probab=28.84 E-value=64 Score=27.03 Aligned_cols=21 Identities=14% Similarity=0.094 Sum_probs=17.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 028601 175 QKRLEGLTEAELEALIEQVEE 195 (207)
Q Consensus 175 QKRleeLtpEEle~L~aEIE~ 195 (207)
++++++||||.++.+++..++
T Consensus 213 ~~~~~~L~~e~q~~i~~a~~~ 233 (257)
T TIGR00787 213 KAFWKSLPPDLQAVVKEAAKE 233 (257)
T ss_pred HHHHhcCCHHHHHHHHHHHHH
Confidence 678999999999999877655
No 110
>PF06738 DUF1212: Protein of unknown function (DUF1212); InterPro: IPR010619 This entry represents a predicted domain found within a number of hypothetical proteins of unknown function found in eukaryotes, bacteria and archaea. Some of these sequences are predicted to be membrane proteins.
Probab=28.79 E-value=1.5e+02 Score=23.75 Aligned_cols=77 Identities=13% Similarity=0.067 Sum_probs=45.8
Q ss_pred hHHhCCCcccchhHHHHHHHhhhhhheeeeeeeeeecCCccHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Q 028601 121 LELFGVDPLQAGNVVEVIVVLGLTLGWVSTYIFRVSNKEMTYAQQLRDYEDKVMQKRLEGLTEAELEALIEQVEEEKR 198 (207)
Q Consensus 121 Lq~~GlD~~~AGiwsQ~lLVlGlvVgWv~SYLfRV~tk~MTY~qQ~kdYE~avLQKRleeLtpEEle~L~aEIE~Ek~ 198 (207)
-+..|+|..+.-..-..+++----=....|.+.|+-.+..- +.+..+..+-.-+=.-+.+++||..+.++||+.++.
T Consensus 23 a~~~G~~~~~~~v~~t~i~is~~~~~~~~t~~~~v~~~~~n-l~~l~~v~~l~~~~~~~~~~~~ea~~~L~~I~~~~~ 99 (193)
T PF06738_consen 23 ARALGLEDVEVFVTPTGIFISFDDDGEPRTRVRRVPPRGVN-LDKLAAVNRLSRRIVAGQLSLEEAIERLDEIDREPP 99 (193)
T ss_pred HHHcCCCeeEEEEecCEEEEEEecCCcceEEEEEeCCCCcC-HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhCCC
Confidence 44567764444333333222200125677889999555444 344555444333333399999999999999988763
No 111
>PF13239 2TM: 2TM domain
Probab=28.66 E-value=1.7e+02 Score=21.10 Aligned_cols=71 Identities=20% Similarity=0.236 Sum_probs=34.5
Q ss_pred cchhhhhhhHHHHHHHHHHHHhhHHhCCCcccchhHHHHHHHhhhhhheeeeeee---eeecCCccHHHHHHHHHHHHHH
Q 028601 99 TRKDVLLIGVGVTVIGYGLKSGLELFGVDPLQAGNVVEVIVVLGLTLGWVSTYIF---RVSNKEMTYAQQLRDYEDKVMQ 175 (207)
Q Consensus 99 tR~DVI~IGlgvfllGg~lY~gLq~~GlD~~~AGiwsQ~lLVlGlvVgWv~SYLf---RV~tk~MTY~qQ~kdYE~avLQ 175 (207)
.|+.-..+=+.+++++-++..++..+.-.... |+-- .+++|....++ +|+-.++.+.+ +.|+..+|
T Consensus 10 ~~~k~fy~Hl~~y~ivn~~l~~in~~~~~~~~---W~~~-----~~~~Wgi~L~~h~~~vf~~~~~~~~---~We~rki~ 78 (83)
T PF13239_consen 10 KRRKGFYRHLAVYLIVNSFLIFINLFTGPGYF---WPLW-----PILGWGIGLAIHALKVFGSKYFFGK---DWEERKIQ 78 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCc---hHHH-----HHHHHHHHHHHHHHHHHcccccccc---hHHHHHHH
Confidence 34455556677777776666665553321111 3321 11223222222 23323344433 77788888
Q ss_pred HHHhc
Q 028601 176 KRLEG 180 (207)
Q Consensus 176 KRlee 180 (207)
|.+++
T Consensus 79 k~m~k 83 (83)
T PF13239_consen 79 KLMEK 83 (83)
T ss_pred HHhcC
Confidence 87763
No 112
>PF09682 Holin_LLH: Phage holin protein (Holin_LLH); InterPro: IPR010026 This entry represents the Bacteriophage LL-H, Orf107, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=28.43 E-value=69 Score=24.59 Aligned_cols=27 Identities=15% Similarity=0.251 Sum_probs=13.5
Q ss_pred hhheeeeeeeeeecCCccHHHHHHHHH
Q 028601 144 TLGWVSTYIFRVSNKEMTYAQQLRDYE 170 (207)
Q Consensus 144 vVgWv~SYLfRV~tk~MTY~qQ~kdYE 170 (207)
+++|++.|+.-...++++=.++.+-++
T Consensus 20 i~~~~~~~~~~~l~~k~~~e~~~~~~~ 46 (108)
T PF09682_consen 20 IAGIIVKYVIKYLKKKAGGEKLVKILE 46 (108)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 455555555555555555333333333
No 113
>cd06171 Sigma70_r4 Sigma70, region (SR) 4 refers to the most C-terminal of four conserved domains found in Escherichia coli (Ec) sigma70, the main housekeeping sigma, and related sigma-factors (SFs). A SF is a dissociable subunit of RNA polymerase, it directs bacterial or plastid core RNA polymerase to specific promoter elements located upstream of transcription initiation points. The SR4 of Ec sigma70 and other essential primary SFs contact promoter sequences located 35 base-pairs upstream of the initiation point, recognizing a 6-base-pair -35 consensus TTGACA. Sigma70 related SFs also include SFs which are dispensable for bacterial cell growth for example Ec sigmaS, SFs which activate regulons in response to a specific signal for example heat-shock Ec sigmaH, and a group of SFs which includes the extracytoplasmic function (ECF) SFs and is typified by Ec sigmaE which contains SR2 and -4 only. ECF SFs direct the transcription of genes that regulate various responses including periplas
Probab=28.43 E-value=79 Score=18.66 Aligned_cols=19 Identities=26% Similarity=0.487 Sum_probs=11.5
Q ss_pred HHHHHHHhcCCHHHHHHHH
Q 028601 172 KVMQKRLEGLTEAELEALI 190 (207)
Q Consensus 172 avLQKRleeLtpEEle~L~ 190 (207)
+.+++.++.|||++.+.+.
T Consensus 2 ~~~~~~~~~l~~~~~~~~~ 20 (55)
T cd06171 2 ERLEEALDKLPEREREVIL 20 (55)
T ss_pred HHHHHHHHhCCHHHHHHHH
Confidence 3456666677666665553
No 114
>COG1230 CzcD Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]
Probab=28.32 E-value=72 Score=29.33 Aligned_cols=74 Identities=24% Similarity=0.422 Sum_probs=42.4
Q ss_pred CCccccchhhhhhhH-HHHHHHHHH---HHhhH-HhCCCcccchhHHHHHHHhhhhhheeeeeeeeee-----cCCccHH
Q 028601 94 TPFGYTRKDVLLIGV-GVTVIGYGL---KSGLE-LFGVDPLQAGNVVEVIVVLGLTLGWVSTYIFRVS-----NKEMTYA 163 (207)
Q Consensus 94 ~pFgMtR~DVI~IGl-gvfllGg~l---Y~gLq-~~GlD~~~AGiwsQ~lLVlGlvVgWv~SYLfRV~-----tk~MTY~ 163 (207)
.+|||.|..++.--+ +++++++.+ |-..+ +.-=.+.+. ...=.+-++|+++-+++.++++-- |.+=.|.
T Consensus 82 ~TfGy~R~eiLaa~~nav~Li~~s~~I~~EAi~R~~~P~~i~~-~~ml~va~~GL~vN~~~a~ll~~~~~~~lN~r~a~L 160 (296)
T COG1230 82 FTFGYKRLEILAAFLNALLLIVVSLLILWEAIQRLLAPPPIHY-SGMLVVAIIGLVVNLVSALLLHKGHEENLNMRGAYL 160 (296)
T ss_pred CCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCc-cchHHHHHHHHHHHHHHHHHhhCCCcccchHHHHHH
Confidence 789999999886422 333333333 33344 332333333 334445566778888888888874 3333455
Q ss_pred HHHHH
Q 028601 164 QQLRD 168 (207)
Q Consensus 164 qQ~kd 168 (207)
.=+.|
T Consensus 161 Hvl~D 165 (296)
T COG1230 161 HVLGD 165 (296)
T ss_pred HHHHH
Confidence 55444
No 115
>PF07256 DUF1435: Protein of unknown function (DUF1435); InterPro: IPR009885 This family consists of several hypothetical Enterobacterial proteins of around 80 residues in length. The function of this family is unknown.
Probab=28.31 E-value=64 Score=24.90 Aligned_cols=47 Identities=26% Similarity=0.378 Sum_probs=28.4
Q ss_pred hHHHHHHHHHHH-HhhHHhCCCcccchhHHHHHHHhhhhhheeeeeeeeeecCCccHHHHHHHHH
Q 028601 107 GVGVTVIGYGLK-SGLELFGVDPLQAGNVVEVIVVLGLTLGWVSTYIFRVSNKEMTYAQQLRDYE 170 (207)
Q Consensus 107 GlgvfllGg~lY-~gLq~~GlD~~~AGiwsQ~lLVlGlvVgWv~SYLfRV~tk~MTY~qQ~kdYE 170 (207)
|=|+++-|.+.- +++--.|+|..+.-+++-.++.. -|=||+|+|.|=
T Consensus 9 gWGvllp~~l~~~l~~~~ls~~~~r~~iv~amL~T~-----------------~MLfh~rlRH~l 56 (78)
T PF07256_consen 9 GWGVLLPGALIPLLALANLSFDQWRIVIVVAMLLTL-----------------AMLFHRRLRHFL 56 (78)
T ss_pred chHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH-----------------HHHHhHhhhHHH
Confidence 445555553222 22445677776666655555554 378999999994
No 116
>TIGR03631 bact_S13 30S ribosomal protein S13. This model describes bacterial ribosomal protein S13, to the exclusion of the homologous archaeal S13P and eukaryotic ribosomal protein S18. This model identifies some (but not all) instances of chloroplast and mitochondrial S13, which is of bacterial type.
Probab=28.27 E-value=42 Score=26.49 Aligned_cols=20 Identities=50% Similarity=0.740 Sum_probs=15.6
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 028601 176 KRLEGLTEAELEALIEQVEE 195 (207)
Q Consensus 176 KRleeLtpEEle~L~aEIE~ 195 (207)
+|+.+|+++|+++|.+.|+.
T Consensus 41 ~~~~~L~~~qi~~l~~~l~~ 60 (113)
T TIGR03631 41 KRVKDLTEEELNAIREEIEA 60 (113)
T ss_pred cccccCCHHHHHHHHHHHHh
Confidence 56778888888888888853
No 117
>PF00831 Ribosomal_L29: Ribosomal L29 protein; InterPro: IPR001854 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L29 is one of the proteins from the large ribosomal subunit. L29 belongs to a family of ribosomal proteins of 63 to 138 amino-acid residues which, on the basis of sequence similarities [], groups: Red algal L29. Bacterial L29. Mammalian L35 Caenorhabditis elegans L35 (ZK652.4). Yeast L35. ; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 1VSP_W 3MS1_Y 3MRZ_Y 3F1H_2 3PYT_Y 3PYO_Y 3D5D_2 3D5B_2 3PYR_Y 1VSA_W ....
Probab=28.23 E-value=53 Score=22.89 Aligned_cols=20 Identities=30% Similarity=0.589 Sum_probs=15.8
Q ss_pred HHhcCCHHHHHHHHHHHHHH
Q 028601 177 RLEGLTEAELEALIEQVEEE 196 (207)
Q Consensus 177 RleeLtpEEle~L~aEIE~E 196 (207)
-+.+||.+|+++.+.|+..|
T Consensus 3 elr~ls~~eL~~~l~elk~e 22 (58)
T PF00831_consen 3 ELRELSDEELQEKLEELKKE 22 (58)
T ss_dssp HHCHSHHHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHH
Confidence 46788999988888888765
No 118
>PF10061 DUF2299: Uncharacterized conserved protein (DUF2299); InterPro: IPR018747 Members of this family of hypothetical bacterial proteins have no known function. ; PDB: 3CXJ_D.
Probab=28.13 E-value=65 Score=26.29 Aligned_cols=26 Identities=23% Similarity=0.294 Sum_probs=20.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHH
Q 028601 172 KVMQKRLEGLTEAELEALIEQVEEEK 197 (207)
Q Consensus 172 avLQKRleeLtpEEle~L~aEIE~Ek 197 (207)
..=|++|.+|+++|.++++.++-.+=
T Consensus 58 ~~H~~~l~~l~~~eR~~fl~~i~~~l 83 (138)
T PF10061_consen 58 PEHQRALRSLKPEEREEFLWEIKREL 83 (138)
T ss_dssp HHHHHHHHHS-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 34578999999999999999997653
No 119
>PRK14549 50S ribosomal protein L29P; Provisional
Probab=28.06 E-value=77 Score=23.08 Aligned_cols=22 Identities=18% Similarity=0.296 Sum_probs=17.5
Q ss_pred HHHhcCCHHHHHHHHHHHHHHH
Q 028601 176 KRLEGLTEAELEALIEQVEEEK 197 (207)
Q Consensus 176 KRleeLtpEEle~L~aEIE~Ek 197 (207)
+-+.+||++||.+.+.|+.+|-
T Consensus 7 ~elr~ls~~eL~~~l~elk~eL 28 (69)
T PRK14549 7 SEIREMSPEEREEKLEELKLEL 28 (69)
T ss_pred HHHHhCCHHHHHHHHHHHHHHH
Confidence 3477899999998888887754
No 120
>PF02899 Phage_int_SAM_1: Phage integrase, N-terminal SAM-like domain; InterPro: IPR004107 Proteins containing this domain cleave DNA substrates by a series of staggered cuts, during which the protein becomes covalently linked to the DNA through a catalytic tyrosine residue at the carboxy end of the alignment [, ]. The phage integrase N-terminal SAM-like domain is almost always found with the signature that defines the phage integrase family (see IPR002104 from INTERPRO).; GO: 0003677 DNA binding, 0015074 DNA integration; PDB: 1Z1G_B 1Z19_A 1Z1B_A 2OXO_A 1P7D_B 3NRW_A 1A0P_A.
Probab=27.95 E-value=74 Score=21.40 Aligned_cols=37 Identities=22% Similarity=0.415 Sum_probs=28.0
Q ss_pred cHHHHHHHHHHHHHH---HHHhcCCHHHHHHHHHHHHHHH
Q 028601 161 TYAQQLRDYEDKVMQ---KRLEGLTEAELEALIEQVEEEK 197 (207)
Q Consensus 161 TY~qQ~kdYE~avLQ---KRleeLtpEEle~L~aEIE~Ek 197 (207)
+|..++++|.+-.-+ .-++++++++++.-.+++.++.
T Consensus 21 ~Y~~~l~~f~~~~~~~~~~~~~~i~~~~v~~f~~~~~~~~ 60 (84)
T PF02899_consen 21 SYRRDLRRFIRWLEEHGIIDWEDITEEDVRDFLEYLAKEG 60 (84)
T ss_dssp HHHHHHHHHHHHHHHTTS-CGGG--HHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHhhhhhhhhhhhhhhhHHHHHHHHHHHccC
Confidence 588889999876666 5789999999999999887753
No 121
>PF11304 DUF3106: Protein of unknown function (DUF3106); InterPro: IPR021455 Some members in this family of proteins are annotated as transmembrane proteins however this cannot be confirmed. Currently no function is known.
Probab=27.89 E-value=95 Score=24.09 Aligned_cols=18 Identities=28% Similarity=0.338 Sum_probs=10.7
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 028601 177 RLEGLTEAELEALIEQVE 194 (207)
Q Consensus 177 RleeLtpEEle~L~aEIE 194 (207)
+|..|||++.++|.+.-+
T Consensus 73 ~~~~Lpp~qR~~lr~~w~ 90 (107)
T PF11304_consen 73 RFKQLPPEQRQALRARWE 90 (107)
T ss_pred HHHcCCHHHHHHHHHHHH
Confidence 455666666666665554
No 122
>PF02697 DUF217: Uncharacterized ACR, COG1753; InterPro: IPR003847 This entry is represented by Natrialba phage PhiCh1, Orf96. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=27.83 E-value=2.1e+02 Score=21.20 Aligned_cols=42 Identities=10% Similarity=0.321 Sum_probs=34.8
Q ss_pred cCCccHHHHHHHH-----HHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Q 028601 157 NKEMTYAQQLRDY-----EDKVMQKRLEGLTEAELEALIEQVEEEKR 198 (207)
Q Consensus 157 tk~MTY~qQ~kdY-----E~avLQKRleeLtpEEle~L~aEIE~Ek~ 198 (207)
..+++|..=..++ ....+.+-|..|+++|-+.+.++++++..
T Consensus 19 ~~~eSFSdvI~rli~~~~~~~~l~~~~g~l~deea~~~~~~i~e~r~ 65 (71)
T PF02697_consen 19 REDESFSDVIERLIEKEKKRRDLMDYFGILSDEEADEMEKDIKEERE 65 (71)
T ss_pred cCCCCHHHHHHHHHhcccchhHHHHHhccCChhhHHHHHHHHHHHHH
Confidence 4678888888777 35889999999999999999999987643
No 123
>PF08285 DPM3: Dolichol-phosphate mannosyltransferase subunit 3 (DPM3); InterPro: IPR013174 This family corresponds to subunit 3 of dolichol-phosphate mannosyltransferase, an enzyme which generates mannosyl donors for glycosylphosphatidylinositols, N-glycan and protein O- and C-mannosylation. DPM3 is an integral membrane protein and plays a role in stabilising the dolichol-phosphate mannosyl transferase complex [].
Probab=27.80 E-value=48 Score=25.56 Aligned_cols=84 Identities=23% Similarity=0.292 Sum_probs=46.5
Q ss_pred ccchhhhhhhHHHHHHHHHHHHhhHHhCCCcccchhHHHHHHHhhh-hhheeeee-eeeeecCCccHHHHHHHHHHHHHH
Q 028601 98 YTRKDVLLIGVGVTVIGYGLKSGLELFGVDPLQAGNVVEVIVVLGL-TLGWVSTY-IFRVSNKEMTYAQQLRDYEDKVMQ 175 (207)
Q Consensus 98 MtR~DVI~IGlgvfllGg~lY~gLq~~GlD~~~AGiwsQ~lLVlGl-vVgWv~SY-LfRV~tk~MTY~qQ~kdYE~avLQ 175 (207)
|||.-=.+..+.+ ++ .+|..+- .|.-+.....+.+++.++=+ .+.=.++| +++|.-+=|||+.
T Consensus 1 Mtr~~~~l~~~~~--l~-~~w~~l~-~~~~~~~~~~~~~ii~~lP~~~Lv~fG~Ysl~~lgy~v~tFnD----------- 65 (91)
T PF08285_consen 1 MTRLQQWLSALLL--LS-ALWLALL-LGLLPLPPEPQQEIIPYLPFYALVSFGCYSLFTLGYGVATFND----------- 65 (91)
T ss_pred CchHHHHHHHHHH--HH-HHHHHHH-HccCCCCchhHHHHHHHhhHHHHHHHHHHHHHHHHHhhhccCC-----------
Confidence 6666544443333 22 4454433 33333555566666654421 00111233 4566667777764
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHhcccc
Q 028601 176 KRLEGLTEAELEALIEQVEEEKRRLAS 202 (207)
Q Consensus 176 KRleeLtpEEle~L~aEIE~Ek~~~~~ 202 (207)
-||+-+.||+||+|-|.+.+.
T Consensus 66 ------cpeA~~eL~~eI~eAK~dLr~ 86 (91)
T PF08285_consen 66 ------CPEAAKELQKEIKEAKADLRK 86 (91)
T ss_pred ------CHHHHHHHHHHHHHHHHHHHH
Confidence 577788899999998877653
No 124
>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8. Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=27.72 E-value=54 Score=26.85 Aligned_cols=13 Identities=31% Similarity=0.544 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHH
Q 028601 183 EAELEALIEQVEE 195 (207)
Q Consensus 183 pEEle~L~aEIE~ 195 (207)
.+|+++|.+|+++
T Consensus 160 ~~ei~~lk~el~~ 172 (192)
T PF05529_consen 160 SEEIEKLKKELEK 172 (192)
T ss_pred HHHHHHHHHHHHH
Confidence 4666666666665
No 125
>PF01545 Cation_efflux: Cation efflux family; InterPro: IPR002524 Members of this family are integral membrane proteins, that are found to increase tolerance to divalent metal ions such as cadmium, zinc, and cobalt. These proteins are considered to be efflux pumps that remove these ions from cells [, ], however others are implicated in ion uptake []. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.; GO: 0008324 cation transmembrane transporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3BYP_B 3BYR_A 3H90_B 2QFI_B 2ZZT_A.
Probab=27.40 E-value=89 Score=26.01 Aligned_cols=31 Identities=35% Similarity=0.429 Sum_probs=18.3
Q ss_pred CCCCccccchhhhhh-hHHHHHHHHHHHHhhH
Q 028601 92 TETPFGYTRKDVLLI-GVGVTVIGYGLKSGLE 122 (207)
Q Consensus 92 ~~~pFgMtR~DVI~I-GlgvfllGg~lY~gLq 122 (207)
.+-|||+.|...+.. ..++++++.+++....
T Consensus 57 ~~~pfG~~r~e~l~~~~~~~~l~~~~~~~~~~ 88 (284)
T PF01545_consen 57 KRYPFGYGRLEPLAALIVSILLIFLGLFLIVE 88 (284)
T ss_dssp SSSSSSSTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccchhhhhhHhhhhhhhhHhhhHHHHHHH
Confidence 568999999877653 3333444444444443
No 126
>PRK00461 rpmC 50S ribosomal protein L29; Reviewed
Probab=27.31 E-value=74 Score=24.51 Aligned_cols=22 Identities=32% Similarity=0.392 Sum_probs=17.5
Q ss_pred HHHhcCCHHHHHHHHHHHHHHH
Q 028601 176 KRLEGLTEAELEALIEQVEEEK 197 (207)
Q Consensus 176 KRleeLtpEEle~L~aEIE~Ek 197 (207)
+-+.+||++||++.+.|+.+|-
T Consensus 3 ~elR~lS~eEL~e~L~elkkEL 24 (87)
T PRK00461 3 KELRKKSVEELEKLVIELKAEL 24 (87)
T ss_pred HHHHhCCHHHHHHHHHHHHHHH
Confidence 4578899999998888887753
No 127
>TIGR02408 ectoine_ThpD ectoine hydroxylase. Both ectoine and hydroxyectoine are compatible solvents that serve as protectants against osmotic and thermal stresses. A number of genomes synthesize ectoine. This enzyme allows conversion of ectoine to hydroxyectoine, which may be more effective for some purposes, and is found in a subset of ectoine-producing organisms.
Probab=27.18 E-value=32 Score=29.78 Aligned_cols=35 Identities=29% Similarity=0.363 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 028601 163 AQQLRDYEDKVMQKRLEGLTEAELEALIEQVEEEK 197 (207)
Q Consensus 163 ~qQ~kdYE~avLQKRleeLtpEEle~L~aEIE~Ek 197 (207)
-+|++.|++.=--.=-.-+++||+++|.+++++--
T Consensus 19 ~eqi~~f~~dGyvvl~~vls~eev~~lr~~i~~~~ 53 (277)
T TIGR02408 19 AKQLQSYERDGFLLLENLFSDDEVAALLAEVERMT 53 (277)
T ss_pred HHHHHHHHHCCEEECcccCCHHHHHHHHHHHHHHH
Confidence 47888888543222234689999999999998853
No 128
>PLN02435 probable UDP-N-acetylglucosamine pyrophosphorylase
Probab=27.10 E-value=79 Score=31.00 Aligned_cols=31 Identities=23% Similarity=0.406 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 028601 165 QLRDYEDKVMQKRLEGLTEAELEALIEQVEE 195 (207)
Q Consensus 165 Q~kdYE~avLQKRleeLtpEEle~L~aEIE~ 195 (207)
.+..+...-|=+-+++|+++|+++|.++|++
T Consensus 28 ~l~~~gQ~HLl~~w~~ls~~e~~~L~~qL~~ 58 (493)
T PLN02435 28 RLKDYGQEDAFALWDELSPEERDLLVRDIES 58 (493)
T ss_pred HHHHcChHHHHHhhhhCCHHHHHHHHHHHHh
Confidence 3444557788889999999999999999986
No 129
>TIGR00439 ftsX putative protein insertion permease FtsX. FtsX is an integral membrane protein encoded in the same operon as signal recognition particle docking protein FtsY and FtsE. It belongs to a family of predicted permeases and may play a role in the insertion of proteins required for potassium transport, cell division, and other activities. FtsE is a hydrophilic nucleotide-binding protein that associates with the inner membrane by means of association with FtsX.
Probab=26.88 E-value=62 Score=29.00 Aligned_cols=16 Identities=19% Similarity=0.538 Sum_probs=12.5
Q ss_pred HHHHhhhhhheeeeee
Q 028601 137 VIVVLGLTLGWVSTYI 152 (207)
Q Consensus 137 ~lLVlGlvVgWv~SYL 152 (207)
+++.+|+++||++|++
T Consensus 282 ~l~~~g~~lg~lgs~~ 297 (309)
T TIGR00439 282 LLLGFCIALGVVGAWL 297 (309)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4556678899999985
No 130
>PF11326 DUF3128: Protein of unknown function (DUF3128); InterPro: IPR021475 This eukaryotic family of proteins has no known function.
Probab=26.71 E-value=1.5e+02 Score=21.75 Aligned_cols=45 Identities=22% Similarity=0.294 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccccCCCC
Q 028601 162 YAQQLRDYEDKVMQKRLEGLTEAELEALIEQVEEEKRRLASGEQV 206 (207)
Q Consensus 162 Y~qQ~kdYE~avLQKRleeLtpEEle~L~aEIE~Ek~~~~~~~~~ 206 (207)
=.+|++||.+-.--|...+..+++.+....+-+.++.....-+.|
T Consensus 36 C~~~~~df~~C~~~k~~~~~~~~~~~e~~~~~~~~~~~~~~sedV 80 (84)
T PF11326_consen 36 CSQWWEDFKFCLRWKSKPEKRPEEVQEILKKREKERRKQGSSEDV 80 (84)
T ss_pred HHHHHHHHHHHHHhccCCccCHHHHHHHHHHhHHHHhcCCCcCcc
Confidence 568899999877666654448999988888877776544444443
No 131
>PF13687 DUF4153: Domain of unknown function (DUF4153)
Probab=26.57 E-value=50 Score=27.63 Aligned_cols=67 Identities=15% Similarity=0.133 Sum_probs=36.1
Q ss_pred CccccchhhhhhhHHHHHHHHHHHHhhHHhCCCcccchhHHHHHHHhhhhhheeeeeeeeeecCCccHHHHHHHHHH
Q 028601 95 PFGYTRKDVLLIGVGVTVIGYGLKSGLELFGVDPLQAGNVVEVIVVLGLTLGWVSTYIFRVSNKEMTYAQQLRDYED 171 (207)
Q Consensus 95 pFgMtR~DVI~IGlgvfllGg~lY~gLq~~GlD~~~AGiwsQ~lLVlGlvVgWv~SYLfRV~tk~MTY~qQ~kdYE~ 171 (207)
.+|-|-.-+..+.+++++++..+++.+.. ...| -+.+++ ..+..++++-= +--.+.+.+.|.+|+|+
T Consensus 150 qYGlT~~R~~~~~~~~~~~~~~l~~~~r~-------~~~~-~i~~~~-~~~~l~~~~~P-~~~~~is~~sQ~~Rl~~ 216 (217)
T PF13687_consen 150 QYGLTPNRYYALLLAIFLLIYALYYIFRK-------RQRW-YIPLSL-AILLLLSSFGP-LDPFRISVNSQLARLEK 216 (217)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHHHHHHHc-------cccc-HHHHHH-HHHHHHHHhCC-CCHHHHhHHHHHHHHhc
Confidence 35666666777777777777777777621 1233 111111 11222222222 55667788888877763
No 132
>PF09012 FeoC: FeoC like transcriptional regulator; InterPro: IPR015102 This entry contains several transcriptional regulators, including FeoC, which contain a HTH motif. FeoC acts as a [Fe-S] dependent transcriptional repressor []. ; PDB: 1XN7_A 2K02_A.
Probab=26.54 E-value=36 Score=23.69 Aligned_cols=33 Identities=15% Similarity=0.294 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 028601 162 YAQQLRDYEDKVMQKRLEGLTEAELEALIEQVEE 195 (207)
Q Consensus 162 Y~qQ~kdYE~avLQKRleeLtpEEle~L~aEIE~ 195 (207)
|.+++..+--+.|.++|+ ++|+.++.+++.+++
T Consensus 8 ~l~~~~~~S~~eLa~~~~-~s~~~ve~mL~~l~~ 40 (69)
T PF09012_consen 8 YLRERGRVSLAELAREFG-ISPEAVEAMLEQLIR 40 (69)
T ss_dssp HHHHS-SEEHHHHHHHTT---HHHHHHHHHHHHC
T ss_pred HHHHcCCcCHHHHHHHHC-cCHHHHHHHHHHHHH
Confidence 444444444788999985 899999999999886
No 133
>smart00529 HTH_DTXR Helix-turn-helix diphteria tox regulatory element. iron dependent repressor
Probab=26.42 E-value=2.3e+02 Score=19.86 Aligned_cols=16 Identities=31% Similarity=0.524 Sum_probs=14.2
Q ss_pred cCCHHHHHHHHHHHHH
Q 028601 180 GLTEAELEALIEQVEE 195 (207)
Q Consensus 180 eLtpEEle~L~aEIE~ 195 (207)
.+++||.+++...++.
T Consensus 66 ~~~~~e~~~l~~~l~~ 81 (96)
T smart00529 66 GVDEEEVHEEAERLEH 81 (96)
T ss_pred CCCHHHHHHHHHHHHc
Confidence 7999999999988874
No 134
>PF14261 DUF4351: Domain of unknown function (DUF4351)
Probab=26.38 E-value=98 Score=21.89 Aligned_cols=20 Identities=40% Similarity=0.562 Sum_probs=9.7
Q ss_pred HHHHHHhcCCHHHHHHHHHH
Q 028601 173 VMQKRLEGLTEAELEALIEQ 192 (207)
Q Consensus 173 vLQKRleeLtpEEle~L~aE 192 (207)
.++.|++.|+.|.++.|-+.
T Consensus 26 ~~~~~I~~l~~eqLE~l~e~ 45 (59)
T PF14261_consen 26 EIQERIQQLSLEQLEALAEA 45 (59)
T ss_pred HHHHHHHcCCHHHHHHHHHH
Confidence 34445555555555555443
No 135
>PTZ00134 40S ribosomal protein S18; Provisional
Probab=26.22 E-value=36 Score=28.57 Aligned_cols=21 Identities=33% Similarity=0.521 Sum_probs=18.5
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 028601 175 QKRLEGLTEAELEALIEQVEE 195 (207)
Q Consensus 175 QKRleeLtpEEle~L~aEIE~ 195 (207)
.+|+.+||++|+++|.+.|++
T Consensus 55 ~~~~~~Lt~~qi~~l~~~i~~ 75 (154)
T PTZ00134 55 TKRAGELTAEEIEKIVEIIAN 75 (154)
T ss_pred CCCcccCCHHHHHHHHHHHhc
Confidence 467899999999999999976
No 136
>COG4858 Uncharacterized membrane-bound protein conserved in bacteria [Function unknown]
Probab=26.20 E-value=53 Score=29.61 Aligned_cols=38 Identities=16% Similarity=0.199 Sum_probs=27.6
Q ss_pred HHhhHHhCCCcccchhHHHHHHHhhhhhheeeeeeeee
Q 028601 118 KSGLELFGVDPLQAGNVVEVIVVLGLTLGWVSTYIFRV 155 (207)
Q Consensus 118 Y~gLq~~GlD~~~AGiwsQ~lLVlGlvVgWv~SYLfRV 155 (207)
||..+.-|=.++.-|.|--++..++.++.|+.-|++-+
T Consensus 146 ~y~yr~~ad~sqr~~~~K~~lv~~~sm~lWi~v~i~t~ 183 (226)
T COG4858 146 YYAYRMRADNSQRPGTWKYLLVAVLSMLLWIAVMIATV 183 (226)
T ss_pred HHHHHhhcccccCCchHHHHHHHHHHHHHHHHHHHHHh
Confidence 34466778556777888877777777899999886654
No 137
>PRK05457 heat shock protein HtpX; Provisional
Probab=26.08 E-value=3.3e+02 Score=24.21 Aligned_cols=35 Identities=11% Similarity=0.321 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Q 028601 162 YAQQLRDYEDKVMQKRLEGLTEAELEALIEQVEEEKR 198 (207)
Q Consensus 162 Y~qQ~kdYE~avLQKRleeLtpEEle~L~aEIE~Ek~ 198 (207)
+.-+.++|+.+..-.++-. |+.+...++.+++...
T Consensus 211 ~~SR~rEy~AD~~Aa~ltg--p~~L~~AL~KL~~~~~ 245 (284)
T PRK05457 211 WFSRHREFRADAGGAKLAG--REKMIAALQRLKTSYE 245 (284)
T ss_pred HHHhHHHHHHHHHHHHhhC--HHHHHHHHHHHHhhCc
Confidence 3356777887777777765 9999999999987655
No 138
>PRK10878 hypothetical protein; Provisional
Probab=26.04 E-value=53 Score=24.40 Aligned_cols=27 Identities=15% Similarity=0.315 Sum_probs=21.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHh
Q 028601 172 KVMQKRLEGLTEAELEALIEQVEEEKR 198 (207)
Q Consensus 172 avLQKRleeLtpEEle~L~aEIE~Ek~ 198 (207)
..+++++++||++|++...+=++.+.+
T Consensus 10 ~F~~~~~~~l~~~e~~~Fe~LL~~~D~ 36 (72)
T PRK10878 10 PFFEHEYDSLSDDEKRIFIRLLECDDP 36 (72)
T ss_pred HHHHHHHhhCCHHHHHHHHHHHcCCCH
Confidence 457889999999999988877776544
No 139
>COG0053 MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=25.68 E-value=1e+02 Score=27.60 Aligned_cols=67 Identities=15% Similarity=0.238 Sum_probs=38.8
Q ss_pred CCCCccccchhhh---hhhHHHHHHHHH-HHHhhHHhC--CCcccchhHHHHHHHhhhhhheeeeeeeeeecC
Q 028601 92 TETPFGYTRKDVL---LIGVGVTVIGYG-LKSGLELFG--VDPLQAGNVVEVIVVLGLTLGWVSTYIFRVSNK 158 (207)
Q Consensus 92 ~~~pFgMtR~DVI---~IGlgvfllGg~-lY~gLq~~G--lD~~~AGiwsQ~lLVlGlvVgWv~SYLfRV~tk 158 (207)
.+-|||.-|..-+ .+++.+++.|+. +|..+..+- -+.-...+..-+.++..++-.|+..|..||.-|
T Consensus 71 ~~HpyGh~k~E~l~sl~~~~~i~~~g~~i~~~a~~~~~~~~~~~~~~~~~~v~l~s~~~~~~l~~~~~~~~kk 143 (304)
T COG0053 71 RDHPYGHGKAETLASLIVSILIFAAGFEILLEAIKRLISPQPVEPPLLALGVALISIVIKEALYRYLRRVGKK 143 (304)
T ss_pred CCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4589999998754 455555555543 334444332 333333333334444444678888898887643
No 140
>PHA02592 52 DNA topisomerase II medium subunit; Provisional
Probab=25.56 E-value=74 Score=30.60 Aligned_cols=29 Identities=28% Similarity=0.393 Sum_probs=24.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 028601 171 DKVMQKRLEGLTEAELEALIEQVEEEKRR 199 (207)
Q Consensus 171 ~avLQKRleeLtpEEle~L~aEIE~Ek~~ 199 (207)
++.|.-||-.||.+|.++|++|+++-+++
T Consensus 389 ~~lL~m~L~~LT~~e~~kL~~e~~~l~~e 417 (439)
T PHA02592 389 DKLVAMNIYSMTSDEREKLQKEAEELEKE 417 (439)
T ss_pred HHHHHhHHHHhhHHHHHHHHHHHHHHHHH
Confidence 78889999999999999999999875443
No 141
>TIGR03766 conserved hypothetical integral membrane protein. Models TIGR03110, TIGR03111, and TIGR03112 describe a three-gene system found in several Gram-positive bacteria, where TIGR03110 is distantly related to a putative transpeptidase, exosortase (TIGR02602). This model describes a small clade that correlates by both gene clustering and phyletic pattern, although imperfectly, to the three gene system. Both this narrow clade, and the larger set of full-length homologous integral membrane proteins, have an especially well-conserved region near the C-terminus with an invariant tyrosine. The function is unknown.
Probab=25.46 E-value=77 Score=29.87 Aligned_cols=32 Identities=19% Similarity=0.163 Sum_probs=26.5
Q ss_pred cHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 028601 161 TYAQQLRDYEDKVMQKRLEGLTEAELEALIEQ 192 (207)
Q Consensus 161 TY~qQ~kdYE~avLQKRleeLtpEEle~L~aE 192 (207)
...+++++|..+++++|++++.|...-++..+
T Consensus 330 ~~~~~k~~~~~k~I~~Rl~~~g~~g~~k~~~~ 361 (483)
T TIGR03766 330 PTKAEKNKYSIKEIKRRLKEKGFAGYIKFLIQ 361 (483)
T ss_pred CCHHHHHHhhHHHHHHHHHHcCchHHHHHHHH
Confidence 33456888889999999999999999888755
No 142
>KOG0182 consensus 20S proteasome, regulatory subunit alpha type PSMA6/SCL1 [Posttranslational modification, protein turnover, chaperones]
Probab=25.35 E-value=1.7e+02 Score=26.81 Aligned_cols=50 Identities=16% Similarity=0.146 Sum_probs=38.7
Q ss_pred hheeeeeeeeee----------cCCccHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHH
Q 028601 145 LGWVSTYIFRVS----------NKEMTYAQQLRDYEDKVMQKRLE---GLTEAELEALIEQVEEE 196 (207)
Q Consensus 145 VgWv~SYLfRV~----------tk~MTY~qQ~kdYE~avLQKRle---eLtpEEle~L~aEIE~E 196 (207)
..=+.|+|||+. ..+--|..||.+||.+.. |+. |||++=|.+-++++.|-
T Consensus 62 d~~tvt~~f~itk~ig~v~tG~~aDar~~v~rar~eAa~~--~yk~Gyemp~DiL~k~~Ad~~Qv 124 (246)
T KOG0182|consen 62 DSSTVTHLFRITKKIGCVITGMIADARSQVQRARYEAAEF--RYKYGYEMPCDILAKRMADKSQV 124 (246)
T ss_pred ccccceeEEEeeccceEEEecCCcchHHHHHHHHHHHHhh--hhhcCCCCCHHHHHHHHhhHHHH
Confidence 344568888863 235569999999998754 554 99999999999999873
No 143
>KOG3248 consensus Transcription factor TCF-4 [Transcription]
Probab=25.34 E-value=1.2e+02 Score=29.64 Aligned_cols=38 Identities=21% Similarity=0.435 Sum_probs=27.0
Q ss_pred ccHHHHHHHHH------------HHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 028601 160 MTYAQQLRDYE------------DKVMQKRLEGLTEAELEALIEQVEEEK 197 (207)
Q Consensus 160 MTY~qQ~kdYE------------~avLQKRleeLtpEEle~L~aEIE~Ek 197 (207)
|-||+-.|.=- |+.|-+|+..|+.||++|--+=-.+|+
T Consensus 200 mlyMKEmRa~vvaEctlKeSAaiNqiLGrRWH~LSrEEQAKYyElArKer 249 (421)
T KOG3248|consen 200 MLYMKEMRAKVVAECTLKESAAINQILGRRWHALSREEQAKYYELARKER 249 (421)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHhHHHhhhhHHHHHHHHHHHHHHH
Confidence 77777654321 778889999999999998754443343
No 144
>PF02686 Glu-tRNAGln: Glu-tRNAGln amidotransferase C subunit; InterPro: IPR003837 Glu-tRNAGln amidotransferase is a heterotrimeric enzyme that is required for correct decoding of glutamine codons during translation. The Glu-tRNA Gln amidotransferase enzyme is an important translational fidelity mechanism replacing incorrectly charged Glu-tRNAGln with the correct Gln-tRANGln via transmidation of the misacylated Glu-tRNAGln []. This activity supplements the lack of glutaminyl-tRNA synthetase activity in Gram-positive eubacteria, cyanobacteria, archaea, and organelles [].; GO: 0006450 regulation of translational fidelity; PDB: 2DQN_C 3IP4_C 2G5I_C 2F2A_C 2G5H_C 2DF4_C 3AL0_C 3KFU_G 3H0R_I 3H0L_U ....
Probab=25.23 E-value=66 Score=22.09 Aligned_cols=15 Identities=53% Similarity=0.747 Sum_probs=11.7
Q ss_pred CCHHHHHHHHHHHHH
Q 028601 181 LTEAELEALIEQVEE 195 (207)
Q Consensus 181 LtpEEle~L~aEIE~ 195 (207)
|++||++++.++++.
T Consensus 1 l~eeE~~~~~~~l~~ 15 (72)
T PF02686_consen 1 LTEEELEKLTKQLND 15 (72)
T ss_dssp --HHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 689999999999875
No 145
>PRK04654 sec-independent translocase; Provisional
Probab=25.21 E-value=71 Score=28.63 Aligned_cols=32 Identities=25% Similarity=0.270 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 028601 162 YAQQLRDYEDKVMQKRLEGLTEAELEALIEQV 193 (207)
Q Consensus 162 Y~qQ~kdYE~avLQKRleeLtpEEle~L~aEI 193 (207)
+..+.|++=+.+.+.=-+|+..+|+.+.++++
T Consensus 35 ~irk~R~~~~~vk~El~~El~~~ELrk~l~~~ 66 (214)
T PRK04654 35 WVRRARMQWDSVKQELERELEAEELKRSLQDV 66 (214)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 44455555544544444555555555544443
No 146
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=25.13 E-value=1.7e+02 Score=25.17 Aligned_cols=25 Identities=20% Similarity=0.182 Sum_probs=14.6
Q ss_pred HHHHHHHHhcCCHHHH--HHHHHHHHH
Q 028601 171 DKVMQKRLEGLTEAEL--EALIEQVEE 195 (207)
Q Consensus 171 ~avLQKRleeLtpEEl--e~L~aEIE~ 195 (207)
++.|+++.++|..+.. +++++|.++
T Consensus 78 n~~L~~e~~~l~~~~~~~~~l~~en~~ 104 (276)
T PRK13922 78 NEELKKELLELESRLQELEQLEAENAR 104 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777777655433 445555554
No 147
>TIGR03798 ocin_TIGR03798 bacteriocin propeptide, TIGR03798 family. This model describes a conserved, fairly long (about 65 residue) propeptide region for a family of putative microcins, that is, bacteriocins of small size. Members of the seed alignment tend to have the Gly-Gly motif as the last two residues of the matched region. This is a cleavage site for a combination processing/export ABC transporter with a peptidase domain.
Probab=25.03 E-value=1.1e+02 Score=21.32 Aligned_cols=27 Identities=19% Similarity=0.346 Sum_probs=14.0
Q ss_pred HHHHHHH-----HHHHHHHHhc-CCHHHHHHHH
Q 028601 164 QQLRDYE-----DKVMQKRLEG-LTEAELEALI 190 (207)
Q Consensus 164 qQ~kdYE-----~avLQKRlee-LtpEEle~L~ 190 (207)
+|++++- +..|+++|.+ .+++|.-+|-
T Consensus 2 e~l~~Fl~~~~~d~~L~~~l~~~~~~e~~~~lA 34 (64)
T TIGR03798 2 EQLKAFLEKVKTDPDLREKLKAAEDPEDRVAIA 34 (64)
T ss_pred HHHHHHHHHHHcCHHHHHHHHHcCCHHHHHHHH
Confidence 4555554 5556666655 3355544443
No 148
>PF10083 DUF2321: Uncharacterized protein conserved in bacteria (DUF2321); InterPro: IPR016891 This entry is represented by Bacteriophage 'Lactobacillus prophage Lj928', Orf-Ljo1454. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=24.94 E-value=85 Score=27.04 Aligned_cols=23 Identities=22% Similarity=0.231 Sum_probs=19.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHH
Q 028601 174 MQKRLEGLTEAELEALIEQVEEE 196 (207)
Q Consensus 174 LQKRleeLtpEEle~L~aEIE~E 196 (207)
|-.-+|||+|+|.|++.+.+++-
T Consensus 91 l~ee~eeLs~deke~~~~sl~dL 113 (158)
T PF10083_consen 91 LIEEDEELSPDEKEQFKESLPDL 113 (158)
T ss_pred HHHHhhcCCHHHHHHHHhhhHHH
Confidence 44479999999999999999873
No 149
>PF04695 Pex14_N: Peroxisomal membrane anchor protein (Pex14p) conserved region; InterPro: IPR006785 This conserved region defines a group of peroxisomal membrane anchor proteins which bind the PTS1 (peroxisomal targeting signal) receptor and are required for the import of PTS1-containing proteins into peroxisomes. Loss of functional Pex14p results in defects in both the PTS1 and PTS2-dependent import pathways. Deletion analysis of this conserved region implicates it in selective peroxisome degradation. In the majority of members this region is situated at the N terminus of the protein [, ].; GO: 0005777 peroxisome, 0016020 membrane; PDB: 2W85_A 2W84_A 3FF5_B.
Probab=24.89 E-value=74 Score=25.37 Aligned_cols=26 Identities=19% Similarity=0.397 Sum_probs=18.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 028601 170 EDKVMQKRLEGLTEAELEALIEQVEEEK 197 (207)
Q Consensus 170 E~avLQKRleeLtpEEle~L~aEIE~Ek 197 (207)
+-+.|++| .||+||++.++++.+...
T Consensus 26 k~~FL~sK--GLt~~EI~~al~~a~~~~ 51 (136)
T PF04695_consen 26 KIAFLESK--GLTEEEIDEALGRAGSPP 51 (136)
T ss_dssp HHHHHHHC--T--HHHHHHHHHHHT--S
T ss_pred HHHHHHcC--CCCHHHHHHHHHhcCCcc
Confidence 45677777 999999999999988765
No 150
>COG2938 Uncharacterized conserved protein [Function unknown]
Probab=24.86 E-value=59 Score=25.54 Aligned_cols=29 Identities=21% Similarity=0.374 Sum_probs=23.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 028601 171 DKVMQKRLEGLTEAELEALIEQVEEEKRR 199 (207)
Q Consensus 171 ~avLQKRleeLtpEEle~L~aEIE~Ek~~ 199 (207)
.-..++.+++||++|+..+..=+|++..+
T Consensus 34 ~~Fae~~~~~lsd~el~~f~~LLe~~D~d 62 (94)
T COG2938 34 GPFAEKEFDSLSDEELDEFERLLECEDND 62 (94)
T ss_pred HHHHHHHHhhCCHHHHHHHHHHHcCCcHH
Confidence 45678999999999999988877765543
No 151
>cd01389 MATA_HMG-box MATA_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include the fungal mating type gene products MC, MATA1 and Ste11.
Probab=24.82 E-value=1.4e+02 Score=20.88 Aligned_cols=28 Identities=18% Similarity=0.184 Sum_probs=21.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHh
Q 028601 171 DKVMQKRLEGLTEAELEALIEQVEEEKR 198 (207)
Q Consensus 171 ~avLQKRleeLtpEEle~L~aEIE~Ek~ 198 (207)
...+-.+..+||+||.+.-.++-++++.
T Consensus 33 sk~~g~~Wk~ls~eeK~~y~~~A~~~k~ 60 (77)
T cd01389 33 SRIIGRMWRSESPEVKAYYKELAEEEKE 60 (77)
T ss_pred HHHHHHHHhhCCHHHHHHHHHHHHHHHH
Confidence 3456678999999999998877766654
No 152
>cd02000 TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC). PDC catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin while BCADC participates in the breakdown of branched chain amino acids. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate (branched chain 2-oxo acids derived from the transamination of leucine, valine and isoleucine).
Probab=24.76 E-value=97 Score=27.05 Aligned_cols=58 Identities=28% Similarity=0.219 Sum_probs=34.3
Q ss_pred hhhhheeeeeeeeeec-C-CccHHHHHHHHH-------HHHHHHHHhc---CCHHHHHHHHHHHHHHHhc
Q 028601 142 GLTLGWVSTYIFRVSN-K-EMTYAQQLRDYE-------DKVMQKRLEG---LTEAELEALIEQVEEEKRR 199 (207)
Q Consensus 142 GlvVgWv~SYLfRV~t-k-~MTY~qQ~kdYE-------~avLQKRlee---LtpEEle~L~aEIE~Ek~~ 199 (207)
|-++.-+.+|-++=-+ . +-+.-.+..+++ -..++++|.+ +|++|++++.+|+.+|=++
T Consensus 219 ~P~lIev~~~r~~gHs~~dd~~~Yr~~~e~~~~~~~dpi~~~~~~L~~~g~~~~~~~~~~~~~~~~~v~~ 288 (293)
T cd02000 219 GPTLIEAVTYRLGGHSTSDDPSRYRTKEEVEEWKKRDPILRLRKYLIEAGILTEEELAAIEAEVKAEVEE 288 (293)
T ss_pred CCEEEEEEEeccCCCCCCCCcccCCCHHHHHHHhcCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence 3455566666555443 1 112212333333 2456777765 7999999999999886543
No 153
>PF09677 TrbI_Ftype: Type-F conjugative transfer system protein (TrbI_Ftype); InterPro: IPR014115 This entry represents TrbI, an essential component of the F-type conjugative transfer system for plasmid DNA transfer that has been shown to be localized to the periplasm [, ].
Probab=24.56 E-value=70 Score=25.33 Aligned_cols=14 Identities=36% Similarity=0.541 Sum_probs=10.1
Q ss_pred hcCCHHHHHHHHHH
Q 028601 179 EGLTEAELEALIEQ 192 (207)
Q Consensus 179 eeLtpEEle~L~aE 192 (207)
.+|||||.+++.+.
T Consensus 52 ~~lt~~q~~a~t~~ 65 (111)
T PF09677_consen 52 SSLTPEQVEALTQR 65 (111)
T ss_pred cCCCHHHHHHHHHH
Confidence 68899888766543
No 154
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=24.45 E-value=2.6e+02 Score=19.67 Aligned_cols=25 Identities=28% Similarity=0.320 Sum_probs=16.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 028601 170 EDKVMQKRLEGLTEAELEALIEQVEE 195 (207)
Q Consensus 170 E~avLQKRleeLtpEEle~L~aEIE~ 195 (207)
+-+.++++++.+ .+|..+|+.|++.
T Consensus 32 ~~~~~~~~~~~l-~~en~~L~~ei~~ 56 (85)
T TIGR02209 32 ELQKLQLEIDKL-QKEWRDLQLEVAE 56 (85)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 345566666665 5667777777765
No 155
>PRK02463 OxaA-like protein precursor; Provisional
Probab=24.24 E-value=5.2e+02 Score=23.71 Aligned_cols=44 Identities=18% Similarity=0.127 Sum_probs=26.5
Q ss_pred eeeeecCCccHHHHHHHH-----------HHHHHHHHHh-cCCHHHHHHHHHHHHH
Q 028601 152 IFRVSNKEMTYAQQLRDY-----------EDKVMQKRLE-GLTEAELEALIEQVEE 195 (207)
Q Consensus 152 LfRV~tk~MTY~qQ~kdY-----------E~avLQKRle-eLtpEEle~L~aEIE~ 195 (207)
+.|++.=-++..||++.. |-+.+|+|.. .-++||.++.++|+-+
T Consensus 70 ivRlillPL~i~q~~ka~~~~~KM~~lqPe~~~Iq~Kyk~~~~~~~~~~~q~em~~ 125 (307)
T PRK02463 70 IVRLIILPLGLYQSWKATYQSEKMAYLKPVFEPINERLKNATTQEEKMAAQTELMA 125 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhChhHHHHHHHHhcCCChHHHHHHHHHHHH
Confidence 457766555555665533 2455777874 4467777777766643
No 156
>TIGR00782 ccoP cytochrome c oxidase, cbb3-type, subunit III. This model describes a di-heme subunit of approximately 26 kDa of the cbb3 type copper and heme-containing cytochrome oxidase.
Probab=24.16 E-value=2.4e+02 Score=24.76 Aligned_cols=17 Identities=18% Similarity=0.012 Sum_probs=9.6
Q ss_pred hhhhhHHHHHHHHHHHH
Q 028601 103 VLLIGVGVTVIGYGLKS 119 (207)
Q Consensus 103 VI~IGlgvfllGg~lY~ 119 (207)
.+.++.+||.+++.++|
T Consensus 32 ~~f~~~i~~~~~y~~~y 48 (285)
T TIGR00782 32 WTFYATIVWGFGYLVAY 48 (285)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 34555666666665544
No 157
>cd01388 SOX-TCF_HMG-box SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and transcription factor-like proteins, TCF-1, -3, -4, and LEF-1. They appear to bind the minor groove of the A/T C A A A G/C-motif.
Probab=24.11 E-value=1.5e+02 Score=20.49 Aligned_cols=28 Identities=21% Similarity=0.357 Sum_probs=22.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 028601 172 KVMQKRLEGLTEAELEALIEQVEEEKRR 199 (207)
Q Consensus 172 avLQKRleeLtpEEle~L~aEIE~Ek~~ 199 (207)
..|-+...+||++|.+..+++-++++++
T Consensus 34 k~l~~~Wk~ls~~eK~~y~~~a~~~k~~ 61 (72)
T cd01388 34 KILGDRWKALSNEEKQPYYEEAKKLKEL 61 (72)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 4567788999999999998887776653
No 158
>TIGR02838 spore_V_AC stage V sporulation protein AC. This model describes stage V sporulation protein AC, a paralog of stage V sporulation protein AE. Both are proteins found to present in a species if and only if that species is one of the Firmicutes capable of endospore formation, as of the time of the publication of the genome of Carboxydothermus hydrogenoformans. Mutants in spoVAC have a stage V sproulation defect.
Probab=23.92 E-value=88 Score=26.33 Aligned_cols=51 Identities=14% Similarity=0.170 Sum_probs=44.4
Q ss_pred CCCCCccccchhhhhhhHHHHHHHHHHHHhhHHhC-CCcccchhHHHHHHHh
Q 028601 91 QTETPFGYTRKDVLLIGVGVTVIGYGLKSGLELFG-VDPLQAGNVVEVIVVL 141 (207)
Q Consensus 91 ~~~~pFgMtR~DVI~IGlgvfllGg~lY~gLq~~G-lD~~~AGiwsQ~lLVl 141 (207)
+.|.|..|.=..+-++|-.+-++|=++.-.+...| ++..+|+.|.-++||+
T Consensus 11 ~Pk~~~~~n~l~AFlvGG~IC~iGQ~l~d~~~~~~~lt~~~a~~~~~~~lV~ 62 (141)
T TIGR02838 11 EPKPPYLKNCVMAFLVGGLICLIGQLISDFYLRYFQFSEKTAGSPTSATLIF 62 (141)
T ss_pred CCCCcHHHHHHHHHHhCcHHHHHHHHHHHHHHHhccCChhhcccchhhHHHH
Confidence 35688889999999999999999988888888788 9999999999888876
No 159
>PF13807 GNVR: G-rich domain on putative tyrosine kinase
Probab=23.68 E-value=1.5e+02 Score=21.25 Aligned_cols=36 Identities=19% Similarity=0.081 Sum_probs=26.1
Q ss_pred CCCCCCCCCccccchhhhhhhHHHHHHHHHHHHhhH
Q 028601 87 DSSDQTETPFGYTRKDVLLIGVGVTVIGYGLKSGLE 122 (207)
Q Consensus 87 ~~~~~~~~pFgMtR~DVI~IGlgvfllGg~lY~gLq 122 (207)
+++.....|-+-+|.=.+++|+++-++.++++..++
T Consensus 45 d~A~~P~~P~~P~~~lil~l~~~~Gl~lgi~~~~~r 80 (82)
T PF13807_consen 45 DPAIVPDKPVSPKRALILALGLFLGLILGIGLAFLR 80 (82)
T ss_pred cccccCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHh
Confidence 555555678888999888888877666666666554
No 160
>PRK05382 chorismate synthase; Validated
Probab=23.50 E-value=1.5e+02 Score=28.20 Aligned_cols=51 Identities=14% Similarity=0.181 Sum_probs=30.3
Q ss_pred eeeeeeeeeecCCccHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 028601 147 WVSTYIFRVSNKEMTYAQQLRDYEDKVMQKRLEGLTEAELEALIEQVEEEKRR 199 (207)
Q Consensus 147 Wv~SYLfRV~tk~MTY~qQ~kdYE~avLQKRleeLtpEEle~L~aEIE~Ek~~ 199 (207)
.+.+|+.++-+-+.+ ..+.++++..-++-+.-+.|+--+++.++|++-+++
T Consensus 144 ~i~s~v~~IG~i~~~--~~~~~~~~~~~~~~~~~~d~~~~~~m~~~I~~ak~~ 194 (359)
T PRK05382 144 EVRGHVVQIGGIEAD--LDWEEVEERADANPVRCPDPEAEEEMEELIDEAKKE 194 (359)
T ss_pred EEEEEEEEEcCCcCC--CCHHHHHhHhhcCCcCCCCHHHHHHHHHHHHHHHHc
Confidence 788999999877665 112222222223445455666667788888775543
No 161
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=23.49 E-value=1.2e+02 Score=26.09 Aligned_cols=51 Identities=24% Similarity=0.319 Sum_probs=27.1
Q ss_pred cchhhhhhhHHHHHHHHHHHHhhH-HhCCCcccchhH--HHHHHHhhhhhheeee
Q 028601 99 TRKDVLLIGVGVTVIGYGLKSGLE-LFGVDPLQAGNV--VEVIVVLGLTLGWVST 150 (207)
Q Consensus 99 tR~DVI~IGlgvfllGg~lY~gLq-~~GlD~~~AGiw--sQ~lLVlGlvVgWv~S 150 (207)
+-+.+++++++.+++|.++=.++. .+-.+... |.| .|+.-+..+++-|+++
T Consensus 138 ~~~rA~~~~~~~L~~G~~lGs~l~~~l~~~~~p-~~~s~~~~~sl~~~i~lwl~s 191 (194)
T PF11833_consen 138 KLGRAFLWTLGGLVVGLILGSLLASWLPVDIVP-GPWSPEQLVSLFTYILLWLVS 191 (194)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhcccccCC-CCCCHHHHHHHHHHHHHHHHH
Confidence 445788889888888855444443 44333222 222 2222222335678765
No 162
>PRK10870 transcriptional repressor MprA; Provisional
Probab=23.36 E-value=2.1e+02 Score=23.31 Aligned_cols=71 Identities=11% Similarity=0.259 Sum_probs=47.6
Q ss_pred hHHhCCCcccchhHHHHHHHhhhhhheee---------eeeeeeecCCccHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 028601 121 LELFGVDPLQAGNVVEVIVVLGLTLGWVS---------TYIFRVSNKEMTYAQQLRDYEDKVMQKRLEGLTEAELEALIE 191 (207)
Q Consensus 121 Lq~~GlD~~~AGiwsQ~lLVlGlvVgWv~---------SYLfRV~tk~MTY~qQ~kdYE~avLQKRleeLtpEEle~L~a 191 (207)
-..+|+|.....-...-+-= -|||- ++..+.--+--...++.....++..++=++.|+|+|++.|..
T Consensus 78 a~~l~l~~~tvsr~v~rLe~----kGlV~R~~~~~DrR~~~v~LT~~G~~~~~~i~~~~~~~~~~~~~~ls~~e~~~l~~ 153 (176)
T PRK10870 78 SCALGSSRTNATRIADELEK----RGWIERRESDNDRRCLHLQLTEKGHEFLREVLPPQHNCLHQLWSALSTTEKDQLEQ 153 (176)
T ss_pred HHHHCCCHHHHHHHHHHHHH----CCCEEecCCCCCCCeeEEEECHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 44777777554444443333 45554 234444444455777888888888888899999999999887
Q ss_pred HHHH
Q 028601 192 QVEE 195 (207)
Q Consensus 192 EIE~ 195 (207)
-+++
T Consensus 154 ~L~k 157 (176)
T PRK10870 154 ITRK 157 (176)
T ss_pred HHHH
Confidence 7765
No 163
>PRK11512 DNA-binding transcriptional repressor MarR; Provisional
Probab=23.32 E-value=2.4e+02 Score=21.66 Aligned_cols=93 Identities=15% Similarity=0.131 Sum_probs=51.2
Q ss_pred CCccccchhhhhhhHHHHHHHHH-HHHhhHHhCCCcccchhHHHHHHHhhhhhheeeeeeeeeec-------------CC
Q 028601 94 TPFGYTRKDVLLIGVGVTVIGYG-LKSGLELFGVDPLQAGNVVEVIVVLGLTLGWVSTYIFRVSN-------------KE 159 (207)
Q Consensus 94 ~pFgMtR~DVI~IGlgvfllGg~-lY~gLq~~GlD~~~AGiwsQ~lLVlGlvVgWv~SYLfRV~t-------------k~ 159 (207)
.|+|+|.....++...- --|+. .--.-..+|+|.....-...-+-=-|+ |-|+.. +-
T Consensus 34 ~~~glt~~q~~vL~~l~-~~~~~t~~eLa~~l~i~~~tvsr~l~~Le~~Gl--------I~R~~~~~DrR~~~l~LT~~G 104 (144)
T PRK11512 34 SPLDITAAQFKVLCSIR-CAACITPVELKKVLSVDLGALTRMLDRLVCKGW--------VERLPNPNDKRGVLVKLTTSG 104 (144)
T ss_pred cccCCCHHHHHHHHHHH-HcCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCC--------EEeccCcccCCeeEeEEChhH
Confidence 57777776654433221 11222 222344778887766666666555543 344432 22
Q ss_pred ccHHHHHH-HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 028601 160 MTYAQQLR-DYEDKVMQKRLEGLTEAELEALIEQVEE 195 (207)
Q Consensus 160 MTY~qQ~k-dYE~avLQKRleeLtpEEle~L~aEIE~ 195 (207)
....++.. .+.++..++=++.|+|||++.|.+-+++
T Consensus 105 ~~~~~~~~~~~~~~~~~~l~~~ls~ee~~~l~~~L~k 141 (144)
T PRK11512 105 AAICEQCHQLVGQDLHQELTKNLTADEVATLEHLLKK 141 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Confidence 22233322 2334555667899999999999877654
No 164
>cd00633 Secretoglobin Secretoglobins are relatively small, secreted, disulphide-bridged dimeric proteins with encoding genes sharing substantial sequence similarity. Their family subunits may be grouped into five subfamilies, A-E. Uteroglobin (subfamily A), which is identical to Clara cell protein (CC10), forms a globular shaped homodimer with a large hydrophobic pocket located between the two dimers. The uteroglobin monomer structure is composed of four alpha helices that do not form a canonical four helix-bundle motif but rather a boomerang-shaped structure in which helices H1, H3, and H4 are able to bind a homodimeric partner. The hydrophobic pocket binds steroids, particularly progesterone, with high specificity. However, the true biological function of uteroglobin is poorly understood. In mammals, uteroglobin has immunosuppressive and anti-inflammatory properties through the inhibition of phospholipase A2. The other four main subfamilies of secretoglobins are found in heterodimeri
Probab=23.26 E-value=1.9e+02 Score=20.26 Aligned_cols=35 Identities=11% Similarity=0.289 Sum_probs=27.1
Q ss_pred ccHHHHHHHHH--------HHHHHHHHhcCCHHHHHHHHHHHH
Q 028601 160 MTYAQQLRDYE--------DKVMQKRLEGLTEAELEALIEQVE 194 (207)
Q Consensus 160 MTY~qQ~kdYE--------~avLQKRleeLtpEEle~L~aEIE 194 (207)
=-|+..++.|. ...+++-+++++++.+.....=++
T Consensus 17 ~~y~~~L~~f~~~~~~~~A~~~lK~C~d~~~~e~k~~~~~~m~ 59 (67)
T cd00633 17 EEYKAELEKFNATPEAVEAKEKLKQCVDEQSLETKENIAKLLE 59 (67)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHhHHHHHHHHHH
Confidence 35889999997 567899999999988776554443
No 165
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=23.20 E-value=1.1e+02 Score=24.32 Aligned_cols=35 Identities=11% Similarity=-0.073 Sum_probs=19.5
Q ss_pred hhHHHHHHHhhhhhheeeeeeeeeecCCccHHHHHHHHH
Q 028601 132 GNVVEVIVVLGLTLGWVSTYIFRVSNKEMTYAQQLRDYE 170 (207)
Q Consensus 132 GiwsQ~lLVlGlvVgWv~SYLfRV~tk~MTY~qQ~kdYE 170 (207)
-++.|++-++ ++.|+..+++ ...=+.++++|+++=
T Consensus 10 ~~~~~~i~Fl--il~~ll~~~l--~~pi~~~l~~R~~~I 44 (164)
T PRK14471 10 LFFWQTILFL--ILLLLLAKFA--WKPILGAVKEREDSI 44 (164)
T ss_pred HHHHHHHHHH--HHHHHHHHHh--HHHHHHHHHHHHHHH
Confidence 3444555555 3666664433 233345778888775
No 166
>PTZ00459 mucin-associated surface protein (MASP); Provisional
Probab=23.18 E-value=39 Score=30.42 Aligned_cols=13 Identities=31% Similarity=0.664 Sum_probs=11.7
Q ss_pred HHHHhhhhhheee
Q 028601 137 VIVVLGLTLGWVS 149 (207)
Q Consensus 137 ~lLVlGlvVgWv~ 149 (207)
+|||..|||.|-+
T Consensus 9 VLLVCALCVLWCg 21 (291)
T PTZ00459 9 VLLVCALCVLWCG 21 (291)
T ss_pred HHHHHHHHHHhcC
Confidence 7899999999975
No 167
>PF10953 DUF2754: Protein of unknown function (DUF2754); InterPro: IPR020490 This entry contains membrane proteins with no known function.
Probab=23.17 E-value=53 Score=24.87 Aligned_cols=46 Identities=24% Similarity=0.298 Sum_probs=31.5
Q ss_pred hhhhhHHHHHHHHHHHHhhHHhCCCcccchhHHHHHHHhhhhhheeeeeeee
Q 028601 103 VLLIGVGVTVIGYGLKSGLELFGVDPLQAGNVVEVIVVLGLTLGWVSTYIFR 154 (207)
Q Consensus 103 VI~IGlgvfllGg~lY~gLq~~GlD~~~AGiwsQ~lLVlGlvVgWv~SYLfR 154 (207)
+..||+...+-|..+..||.+-|..+-..|.+.= ++--|+..++.|
T Consensus 15 afa~glifilngvvgllgfeakgwqtyavglvtw------visfwlag~iir 60 (70)
T PF10953_consen 15 AFAIGLIFILNGVVGLLGFEAKGWQTYAVGLVTW------VISFWLAGFIIR 60 (70)
T ss_pred HHHHHHHHHhhchhhhceecccCceeeeehhHHH------HHHHHHhhheee
Confidence 5678888888888888888888887766554321 224466666665
No 168
>PF10666 Phage_Gp14: Phage protein Gp14; InterPro: IPR018923 This Listeria phage Gp14 protein family is of unknown function but is expressed from within a cluster of tail- and base plate genes [].
Probab=23.14 E-value=1.7e+02 Score=24.91 Aligned_cols=47 Identities=23% Similarity=0.322 Sum_probs=30.1
Q ss_pred eeeeeeeecCCc---cHHHHHHHHHH--HHHHHH----HhcCCHHHHHHHHHHHHH
Q 028601 149 STYIFRVSNKEM---TYAQQLRDYED--KVMQKR----LEGLTEAELEALIEQVEE 195 (207)
Q Consensus 149 ~SYLfRV~tk~M---TY~qQ~kdYE~--avLQKR----leeLtpEEle~L~aEIE~ 195 (207)
++=||||.-++= -|-+|-..|++ ..++|. +++|||||.-+|..++.+
T Consensus 21 g~elfKV~~~DE~~rk~~e~~~kykkk~e~l~k~~id~~~EmS~e~~~aLe~~~re 76 (140)
T PF10666_consen 21 GGELFKVSLDDEMRRKWIEADEKYKKKAEKLNKYNIDFDREMSSEEYRALEEQQRE 76 (140)
T ss_pred cceeeeeecChHHHHHHHHHHHHHHHHHHHhhhhcccchhhcCHHHHHHHHHHHHH
Confidence 556888877652 24455555542 223332 378999999999888754
No 169
>PF04277 OAD_gamma: Oxaloacetate decarboxylase, gamma chain ; InterPro: IPR005899 This family comprises distantly related, low complexity, hydrophobic small subunits of several related sodium ion-pumping decarboxylases. These include oxaloacetate decarboxylase gamma subunit and methylmalonyl-CoA decarboxylase delta subunit [].; GO: 0008948 oxaloacetate decarboxylase activity, 0015081 sodium ion transmembrane transporter activity, 0071436 sodium ion export, 0016020 membrane
Probab=23.13 E-value=27 Score=24.74 Aligned_cols=17 Identities=6% Similarity=0.038 Sum_probs=12.1
Q ss_pred CCHHHHHHHHHHHHHHH
Q 028601 181 LTEAELEALIEQVEEEK 197 (207)
Q Consensus 181 LtpEEle~L~aEIE~Ek 197 (207)
.+||..+++-+=|.+.+
T Consensus 61 ~~~~~vAaI~AAi~~~~ 77 (79)
T PF04277_consen 61 DDPELVAAIAAAIAAYR 77 (79)
T ss_pred CChHHHHHHHHHHHHHH
Confidence 77788888777766544
No 170
>smart00096 UTG Uteroglobin.
Probab=23.01 E-value=2e+02 Score=21.46 Aligned_cols=35 Identities=17% Similarity=0.477 Sum_probs=27.7
Q ss_pred cHHHHHHHHH--------HHHHHHHHhcCCHHHHHHHHHHHHH
Q 028601 161 TYAQQLRDYE--------DKVMQKRLEGLTEAELEALIEQVEE 195 (207)
Q Consensus 161 TY~qQ~kdYE--------~avLQKRleeLtpEEle~L~aEIE~ 195 (207)
.|.++++.|. ...+.+-.|.||++..+.+.+=+|+
T Consensus 20 ~Y~~~l~~y~~~~~~~ea~~~lK~cvD~L~~~~k~~i~~ll~k 62 (69)
T smart00096 20 SYEASLKQFKPDPDMLEAGRQLKKLVDTLPQETRENILKLTEK 62 (69)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 4999999998 4567788899999988776665555
No 171
>PF02468 PsbN: Photosystem II reaction centre N protein (psbN); InterPro: IPR003398 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbN found in PSII. PsbN may have a role in PSII stability, however its actual function unknown. PsbN does not appear to be essential for photoautotrophic growth or normal PSII function.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane
Probab=22.99 E-value=75 Score=22.11 Aligned_cols=25 Identities=20% Similarity=0.171 Sum_probs=20.9
Q ss_pred hhhhhhhHHHHHHHHHHHHhhHHhC
Q 028601 101 KDVLLIGVGVTVIGYGLKSGLELFG 125 (207)
Q Consensus 101 ~DVI~IGlgvfllGg~lY~gLq~~G 125 (207)
.-++.|.++++++|.-+|....++|
T Consensus 4 a~~~~i~i~~~lv~~Tgy~iYtaFG 28 (43)
T PF02468_consen 4 ATVLAIFISCLLVSITGYAIYTAFG 28 (43)
T ss_pred eeeHHHHHHHHHHHHHhhhhhheeC
Confidence 4567888999999988888888888
No 172
>TIGR02530 flg_new flagellar operon protein. Members of this family are found in a subset of bacterial flagellar operons, generally between genes designated flgD and flgE, in species as diverse as Bacillus halodurans and various other Firmicutes, Geobacter sulfurreducens, and Bdellovibrio bacteriovorus. The specific molecular function is unknown.
Probab=22.78 E-value=1.1e+02 Score=24.21 Aligned_cols=23 Identities=26% Similarity=0.494 Sum_probs=18.2
Q ss_pred HHHHhc----CCHHHHHHHHHHHHHHH
Q 028601 175 QKRLEG----LTEAELEALIEQVEEEK 197 (207)
Q Consensus 175 QKRlee----LtpEEle~L~aEIE~Ek 197 (207)
++||.+ |+++++++|.+-+++-+
T Consensus 22 ~~RL~~R~I~l~~~~~~~i~~av~~A~ 48 (96)
T TIGR02530 22 LERMRERNISINPDDWKKLLEAVEEAE 48 (96)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHHH
Confidence 455555 99999999999998744
No 173
>PF03937 Sdh5: Flavinator of succinate dehydrogenase; InterPro: IPR005631 This entry represents a group of uncharacterised small proteins found in both eukaryotes and prokaryotes, including NMA1147 from Neisseria meningitidis [] and YgfY from Escherichia coli []. YgfY may be involved in transcriptional regulation. The structure of these proteins consists of a complex bundle of five alpha-helices, which is composed of an up-down 3-helix bundle plus an orthogonal 2-helix bundle. ; PDB: 2LM4_A 1PUZ_A 2JR5_A 1X6I_A 1X6J_A.
Probab=22.74 E-value=82 Score=22.81 Aligned_cols=28 Identities=25% Similarity=0.420 Sum_probs=20.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHh
Q 028601 171 DKVMQKRLEGLTEAELEALIEQVEEEKR 198 (207)
Q Consensus 171 ~avLQKRleeLtpEEle~L~aEIE~Ek~ 198 (207)
...+++.++.|+++|++++..=++.+..
T Consensus 22 ~~f~~~~~~~l~~~el~~fe~lL~~~D~ 49 (74)
T PF03937_consen 22 GRFADAHLDSLSEEELDAFERLLDLEDP 49 (74)
T ss_dssp HHHHHHHHHHS-HHHHHHHHHHHTS-HH
T ss_pred HHHHHHHHhhCCHHHHHHHHHHHcCCCH
Confidence 4567899999999999998876665543
No 174
>PRK09814 beta-1,6-galactofuranosyltransferase; Provisional
Probab=22.59 E-value=1.8e+02 Score=25.12 Aligned_cols=47 Identities=17% Similarity=0.289 Sum_probs=34.4
Q ss_pred cCCccHHHHHHHHH-------HHHHHHHHhcCCHHHHHHHHHHHHHHHhccccC
Q 028601 157 NKEMTYAQQLRDYE-------DKVMQKRLEGLTEAELEALIEQVEEEKRRLASG 203 (207)
Q Consensus 157 tk~MTY~qQ~kdYE-------~avLQKRleeLtpEEle~L~aEIE~Ek~~~~~~ 203 (207)
++..-..+..+++. .+.+.++++++++||.+++.+...+--+..+.|
T Consensus 266 ~~~~~~~~~V~~~~~G~~v~~~~el~~~l~~~~~~~~~~m~~n~~~~~~~~~~g 319 (333)
T PRK09814 266 WSKAAIADFIVENGLGFVVDSLEELPEIIDNITEEEYQEMVENVKKISKLLRNG 319 (333)
T ss_pred CCCccHHHHHHhCCceEEeCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhcc
Confidence 34444556666665 367999999999999999988888766665555
No 175
>COG4653 Predicted phage phi-C31 gp36 major capsid-like protein [General function prediction only]
Probab=22.47 E-value=86 Score=30.66 Aligned_cols=26 Identities=23% Similarity=0.236 Sum_probs=19.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 028601 171 DKVMQKRLEGLTEAELEALIEQVEEEK 197 (207)
Q Consensus 171 ~avLQKRleeLtpEEle~L~aEIE~Ek 197 (207)
.+++++|||++ +||..++++++|.++
T Consensus 30 ~aEqr~r~e~~-eeen~~~l~~~er~~ 55 (422)
T COG4653 30 RAEQRRRGEEA-EEENRRLLADIERVG 55 (422)
T ss_pred HHHHHHHHHHH-HHHHHHHhhhhhhhc
Confidence 67788888887 567888888888744
No 176
>PRK00247 putative inner membrane protein translocase component YidC; Validated
Probab=22.35 E-value=3.1e+02 Score=26.61 Aligned_cols=63 Identities=14% Similarity=0.227 Sum_probs=33.9
Q ss_pred HhCCCcccchhHHHHHHHhhhhhheeeeeeeeeecCCccHHHHHHHHH-------HHHHHHHH-hcCCHHHHHHHHHHHH
Q 028601 123 LFGVDPLQAGNVVEVIVVLGLTLGWVSTYIFRVSNKEMTYAQQLRDYE-------DKVMQKRL-EGLTEAELEALIEQVE 194 (207)
Q Consensus 123 ~~GlD~~~AGiwsQ~lLVlGlvVgWv~SYLfRV~tk~MTY~qQ~kdYE-------~avLQKRl-eeLtpEEle~L~aEIE 194 (207)
.+|+|+. .+.|..++++. + +.|++-=-.++.|++..-. =+.||++. +..++|+++++++|.-
T Consensus 23 ~~G~~~~-l~W~isIi~lt-i--------iVRliLlPL~~~q~ks~~km~~lqPel~~iq~kyk~~~d~e~~~~~qqe~~ 92 (429)
T PRK00247 23 VLGLDDS-LAWFASLFGLV-I--------TVRAIIAPFTWQQYKSGRTAAHIRPKRKALREEYKGKTDEASIRELQQKQK 92 (429)
T ss_pred cccCcCC-CcHHHHHHHHH-H--------HHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 6788773 44454444432 2 2344444445555443322 34456666 4567777777777665
Q ss_pred H
Q 028601 195 E 195 (207)
Q Consensus 195 ~ 195 (207)
+
T Consensus 93 ~ 93 (429)
T PRK00247 93 D 93 (429)
T ss_pred H
Confidence 4
No 177
>PF09446 VMA21: VMA21-like domain; InterPro: IPR019013 The vacuolar ATPase assembly integral membrane protein VMA21 is required for the assembly of the integral membrane sector (V0 component) of the vacuolar ATPase (V-ATPase) in the endoplasmic reticulum []. This entry represents a putative short domain found in VMA21-like proteins, and which appears to contain two potential transmembrane helices.
Probab=22.16 E-value=87 Score=22.51 Aligned_cols=52 Identities=19% Similarity=0.328 Sum_probs=34.3
Q ss_pred hhhhhhHHHHHHHHHHHHhhHHh------CCCcccchhHHHHHHHhhhhhheeeeeeee
Q 028601 102 DVLLIGVGVTVIGYGLKSGLELF------GVDPLQAGNVVEVIVVLGLTLGWVSTYIFR 154 (207)
Q Consensus 102 DVI~IGlgvfllGg~lY~gLq~~------GlD~~~AGiwsQ~lLVlGlvVgWv~SYLfR 154 (207)
+.+.-.+.++.+..+.|++++.. ++|+.++.+++-.+-|+++ -.=+..|++|
T Consensus 7 kLl~fs~~M~~lPl~~ff~~~~~~~~~~~~~~~~~~~~~sgi~Avi~v-nvVl~~Yi~~ 64 (66)
T PF09446_consen 7 KLLFFSVLMFTLPLGTFFGFKYFLFDGFFGLSPSDNTIYSGIAAVIVV-NVVLASYIYV 64 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccCCcchhhHHHHHHHHHHH-HHHHHHHHHH
Confidence 34566778889999999987744 4555677777776666643 3344556554
No 178
>PF13148 DUF3987: Protein of unknown function (DUF3987)
Probab=22.13 E-value=1.2e+02 Score=26.27 Aligned_cols=12 Identities=33% Similarity=0.900 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHH
Q 028601 162 YAQQLRDYEDKV 173 (207)
Q Consensus 162 Y~qQ~kdYE~av 173 (207)
|.+|+++|+.+.
T Consensus 74 ~~~~~~~y~~~~ 85 (378)
T PF13148_consen 74 YEEELEEYEAEL 85 (378)
T ss_pred HHHHHHHHHHHH
Confidence 555666666444
No 179
>COG3771 Predicted membrane protein [Function unknown]
Probab=21.95 E-value=27 Score=28.01 Aligned_cols=40 Identities=20% Similarity=0.502 Sum_probs=29.2
Q ss_pred hhHHHHHHHhhhhhheeeeee--eeeecCCccHHHHHHHHHH
Q 028601 132 GNVVEVIVVLGLTLGWVSTYI--FRVSNKEMTYAQQLRDYED 171 (207)
Q Consensus 132 GiwsQ~lLVlGlvVgWv~SYL--fRV~tk~MTY~qQ~kdYE~ 171 (207)
....-.++.+|+++||+.+=+ +||--+.|.-..|.|+-|.
T Consensus 42 STLla~lF~~G~~lgwli~g~fy~k~~l~~~~l~rqiKr~~~ 83 (97)
T COG3771 42 STLLATLFAAGFALGWLICGLFYLKVRLSLMRLERQIKRLEN 83 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344557888999999997755 4666677777777777654
No 180
>cd04748 Commd COMM_Domain, a family of domains found at the C-terminus of HCarG, the copper metabolism gene MURR1 product, and related proteins. Presumably all COMM_Domain containing proteins are located in the nucleus and the COMM domain plays a role in protein-protein interactions. Several family members have been shown to bind and inhibit NF-kappaB. Murr1/Commd1 is a protein involved in copper homeostasis, which has also been identified as a regulator of the human delta epithelial sodium channel. HCaRG, a nuclear protein that might be involved in cell proliferation, is negatively regulated by extracellular calcium concentration, and its basal mRNA levels are higher in hypertensive animals.
Probab=21.93 E-value=93 Score=22.54 Aligned_cols=19 Identities=21% Similarity=0.457 Sum_probs=16.4
Q ss_pred cCCHHHHHHHHHHHHHHHh
Q 028601 180 GLTEAELEALIEQVEEEKR 198 (207)
Q Consensus 180 eLtpEEle~L~aEIE~Ek~ 198 (207)
||+++|++.+..++++-++
T Consensus 67 E~~~~~l~~l~~~L~~a~~ 85 (87)
T cd04748 67 EMTKEELQNFLNKLKKIKA 85 (87)
T ss_pred EeCHHHHHHHHHHHHHHHh
Confidence 8999999999999987543
No 181
>PF08784 RPA_C: Replication protein A C terminal; InterPro: IPR014892 This protein corresponds to the C-terminal of the single stranded DNA binding protein RPA (replication protein A). RPA is involved in many DNA metabolic pathways including DNA replication, DNA repair, recombination, cell cycle and DNA damage checkpoints. ; PDB: 1QUQ_C 2PQA_C 3KDF_B 2Z6K_B 2PI2_B 1L1O_E 1DPU_A 1Z1D_A.
Probab=21.87 E-value=1.1e+02 Score=22.46 Aligned_cols=25 Identities=20% Similarity=0.438 Sum_probs=20.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHH
Q 028601 171 DKVMQKRLEGLTEAELEALIEQVEEE 196 (207)
Q Consensus 171 ~avLQKRleeLtpEEle~L~aEIE~E 196 (207)
-..|.++| .|+++|+.+-.+++..|
T Consensus 68 v~~I~~~l-~~~~~~v~~al~~L~~e 92 (102)
T PF08784_consen 68 VDEIAQQL-GMSENEVRKALDFLSNE 92 (102)
T ss_dssp HHHHHHHS-TS-HHHHHHHHHHHHHT
T ss_pred HHHHHHHh-CcCHHHHHHHHHHHHhC
Confidence 46778888 99999999999988765
No 182
>PRK10429 melibiose:sodium symporter; Provisional
Probab=21.81 E-value=3.2e+02 Score=24.62 Aligned_cols=9 Identities=44% Similarity=0.560 Sum_probs=6.5
Q ss_pred hhHHhCCCc
Q 028601 120 GLELFGVDP 128 (207)
Q Consensus 120 gLq~~GlD~ 128 (207)
.+.+.|+|+
T Consensus 390 ~l~~~Gy~~ 398 (473)
T PRK10429 390 VLGLIGYVP 398 (473)
T ss_pred HHHHcCCCC
Confidence 367888875
No 183
>PRK01381 Trp operon repressor; Provisional
Probab=21.81 E-value=1.3e+02 Score=23.96 Aligned_cols=25 Identities=36% Similarity=0.271 Sum_probs=20.4
Q ss_pred HHHHHHHHHhc-CCHHHHHHHHHHHH
Q 028601 170 EDKVMQKRLEG-LTEAELEALIEQVE 194 (207)
Q Consensus 170 E~avLQKRlee-LtpEEle~L~aEIE 194 (207)
+...++.-|+. |||+|+++|..-+.
T Consensus 21 ~~~~~~~~l~~llTp~Er~al~~R~~ 46 (99)
T PRK01381 21 EEDLHLPLLTLLLTPDEREALGTRVR 46 (99)
T ss_pred cHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 36677888888 99999999987665
No 184
>PF07037 DUF1323: Putative transcription regulator (DUF1323); InterPro: IPR010749 This family consists of several hypothetical Enterobacterial proteins of around 120 residues in length. The function of this family is unknown.
Probab=21.77 E-value=63 Score=26.80 Aligned_cols=43 Identities=26% Similarity=0.297 Sum_probs=26.7
Q ss_pred eeecCCccHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 028601 154 RVSNKEMTYAQQLRDYEDKVMQKRLEGLTEAELEALIEQVEEE 196 (207)
Q Consensus 154 RV~tk~MTY~qQ~kdYE~avLQKRleeLtpEEle~L~aEIE~E 196 (207)
|+.-....|.....+==...|-.=+++|||.|+++|-.=+-.|
T Consensus 66 ~~~E~~~~y~~~~~~~l~~~ii~~~~~Mt~~EQ~~L~~lL~RE 108 (122)
T PF07037_consen 66 RLAEPPAEYAVTWDSPLERQIIDTLEEMTPAEQEQLTSLLLRE 108 (122)
T ss_pred hccCCccccCCCCcchHHHHHHHHHHHCCHHHHHHHHHHHHHh
Confidence 4444444442222222245566778999999999998776655
No 185
>PF07271 Cytadhesin_P30: Cytadhesin P30/P32; InterPro: IPR009896 This family consists of several Mycoplasma species specific Cytadhesin P32 and P30 proteins. P30 has been found to be membrane associated and localised on the tip organelle. It is thought that it is important in cytadherence and virulence [].; GO: 0007157 heterophilic cell-cell adhesion, 0009405 pathogenesis, 0016021 integral to membrane
Probab=21.77 E-value=1.3e+02 Score=27.99 Aligned_cols=8 Identities=50% Similarity=1.227 Sum_probs=3.8
Q ss_pred HHhhhhhh
Q 028601 139 VVLGLTLG 146 (207)
Q Consensus 139 LVlGlvVg 146 (207)
|+||+.||
T Consensus 84 liLgl~ig 91 (279)
T PF07271_consen 84 LILGLAIG 91 (279)
T ss_pred HHHHHhhc
Confidence 44445444
No 186
>MTH00046 CYTB cytochrome b; Validated
Probab=21.76 E-value=1.2e+02 Score=28.60 Aligned_cols=45 Identities=29% Similarity=0.273 Sum_probs=30.8
Q ss_pred ccccCCCCCCCCCCCCCCCCCCCcc--ccchhhhhhhHHHHHHHHHH
Q 028601 73 IIPRSSGSSNSNGSDSSDQTETPFG--YTRKDVLLIGVGVTVIGYGL 117 (207)
Q Consensus 73 ~~~r~~~~~~~~~~~~~~~~~~pFg--MtR~DVI~IGlgvfllGg~l 117 (207)
...|..+|+|..+.++++.+|.||- ++-+|.+.+.+.++++....
T Consensus 189 ~~lh~~GssNPlg~~~~~~dki~F~Py~~~KDl~~~~~~l~~~~~~~ 235 (355)
T MTH00046 189 FYLHKSGSSNPLFSSNGYSDVVYFHSYFTVKDLFLFMVVCSLLVFWL 235 (355)
T ss_pred hheeecccCCcccccCCcccccCCCchHHHHHHHHHHHHHHHHHHHH
Confidence 3467788888877666545678885 48899877766666555443
No 187
>PRK02944 OxaA-like protein precursor; Validated
Probab=21.73 E-value=3.6e+02 Score=23.74 Aligned_cols=44 Identities=9% Similarity=0.125 Sum_probs=28.6
Q ss_pred eeeeecCCccHHHHHHHHH-------HHHHHHHHhcCCHHHHHHHHHHHHH
Q 028601 152 IFRVSNKEMTYAQQLRDYE-------DKVMQKRLEGLTEAELEALIEQVEE 195 (207)
Q Consensus 152 LfRV~tk~MTY~qQ~kdYE-------~avLQKRleeLtpEEle~L~aEIE~ 195 (207)
+.|++.=-.++.+|+..-+ =+++|+|..+=++++.+++++|.-+
T Consensus 69 ivR~illPl~~~q~~~~~km~~iqPe~~~iq~kyk~~~~~~~~k~~~e~~~ 119 (255)
T PRK02944 69 LIRLLILPLMIKQTKSTKAMQALQPEMQKLKEKYSSKDQATQQKLQQEMMQ 119 (255)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 4577666666777666655 3556666655567778888877654
No 188
>PF12616 DUF3775: Protein of unknown function (DUF3775); InterPro: IPR022254 This domain family is found in bacteria, and is approximately 80 amino acids in length. There is a single completely conserved residue G that may be functionally important.
Probab=21.72 E-value=1.1e+02 Score=22.86 Aligned_cols=21 Identities=24% Similarity=0.423 Sum_probs=17.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHH
Q 028601 171 DKVMQKRLEGLTEAELEALIE 191 (207)
Q Consensus 171 ~avLQKRleeLtpEEle~L~a 191 (207)
...|.+=++.|+|+|+..|.+
T Consensus 3 ~~el~~~I~~l~~deqaeLvA 23 (75)
T PF12616_consen 3 EEELRSFIEDLNEDEQAELVA 23 (75)
T ss_pred HHHHHHHHHhCCHHHHHHHHH
Confidence 356788899999999998876
No 189
>COG3923 PriC Primosomal replication protein N'' [DNA replication, recombination, and repair]
Probab=21.65 E-value=1.4e+02 Score=26.29 Aligned_cols=37 Identities=27% Similarity=0.328 Sum_probs=24.9
Q ss_pred HHHHHHH------HHHHHHHHhcCC-HHHHHHHHHHHHHHHhcc
Q 028601 164 QQLRDYE------DKVMQKRLEGLT-EAELEALIEQVEEEKRRL 200 (207)
Q Consensus 164 qQ~kdYE------~avLQKRleeLt-pEEle~L~aEIE~Ek~~~ 200 (207)
-|-+||| .+.+.-+++--| -.|+++|++||+.-+++.
T Consensus 113 ~qhqd~Errl~~m~~~r~l~l~q~s~~vEqq~lqqel~~~e~Rl 156 (175)
T COG3923 113 AQHQDYERRLLAMVQDRRLQLAQQSDLVEQQKLQQELEAYEQRL 156 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3667888 333344555555 679999999999866554
No 190
>PRK04156 gltX glutamyl-tRNA synthetase; Provisional
Probab=21.53 E-value=1.1e+02 Score=30.48 Aligned_cols=21 Identities=14% Similarity=0.251 Sum_probs=17.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHH
Q 028601 173 VMQKRLEGLTEAELEALIEQV 193 (207)
Q Consensus 173 vLQKRleeLtpEEle~L~aEI 193 (207)
.+=++.++||+||++++++|+
T Consensus 53 ~~v~~vn~ms~ee~~~~l~~~ 73 (567)
T PRK04156 53 EVVEEVNSLSLEEQRERLEEL 73 (567)
T ss_pred HHHHHHhcCCHHHHHHHHHHh
Confidence 344789999999999999883
No 191
>PF13623 SurA_N_2: SurA N-terminal domain
Probab=21.50 E-value=3.3e+02 Score=22.23 Aligned_cols=33 Identities=18% Similarity=0.257 Sum_probs=14.0
Q ss_pred eeeecCCcc---HHHHHHHHHHHHHHHHHhcCCHHH
Q 028601 153 FRVSNKEMT---YAQQLRDYEDKVMQKRLEGLTEAE 185 (207)
Q Consensus 153 fRV~tk~MT---Y~qQ~kdYE~avLQKRleeLtpEE 185 (207)
--|-.++-| |.++.+.|++..=+..=.+.+++|
T Consensus 42 G~VnGe~Is~~ef~~~v~~~~~~~k~~~g~~~~~~~ 77 (145)
T PF13623_consen 42 GEVNGEKISYQEFQQRVEQATENYKQQNGRSPTEQE 77 (145)
T ss_pred EeECCEEcCHHHHHHHHHHHHHHHHHHcCCCCChHH
Confidence 345556666 344444444322222223444544
No 192
>PF08920 SF3b1: Splicing factor 3B subunit 1; InterPro: IPR015016 This group of proteins consists of several eukaryotic splicing factor 3B subunit 1 proteins, which associate with p14 through a C terminus beta-strand that interacts with beta-3 of the p14 RNA recognition motif (RRM) beta-sheet, which is in turn connected to an alpha-helix by a loop that makes extensive contacts with both the shorter C-terminal helix and RRM of p14. This subunit is required for 'A' splicing complex assembly (formed by the stable binding of U2 snRNP to the branchpoint sequence in pre-mRNA) and 'E' splicing complex assembly []. ; PDB: 2FHO_A 3LQV_P 2PEH_D 2F9J_P 2F9D_Q.
Probab=21.49 E-value=61 Score=26.97 Aligned_cols=27 Identities=30% Similarity=0.524 Sum_probs=20.3
Q ss_pred HHHHHHH-HHHHHHHHhcCCHHHHHHHH
Q 028601 164 QQLRDYE-DKVMQKRLEGLTEAELEALI 190 (207)
Q Consensus 164 qQ~kdYE-~avLQKRleeLtpEEle~L~ 190 (207)
.|...|+ +.+|.+|-.-||+|||.+|+
T Consensus 69 ~~~~~~~~~~eid~RNrpLTDEELD~mL 96 (144)
T PF08920_consen 69 EQYQAMRWEKEIDERNRPLTDEELDAML 96 (144)
T ss_dssp HHHHHHHHHHHHHHCTS-S-HHHHHHTS
T ss_pred hhhhhhccccchhhccCcCCHHHHHHhC
Confidence 4455555 77899999999999999998
No 193
>PRK11901 hypothetical protein; Reviewed
Probab=21.41 E-value=1.1e+02 Score=28.92 Aligned_cols=21 Identities=43% Similarity=0.379 Sum_probs=13.2
Q ss_pred CccccccccccccccccccCCCCC
Q 028601 58 PRKGSKKLISDRARFIIPRSSGSS 81 (207)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~r~~~~~ 81 (207)
|+..|+--.++||. +||..++
T Consensus 6 pe~elkPDtSDRrp---~Rsr~~~ 26 (327)
T PRK11901 6 PEDELKPDTSDRRP---TRSRKSS 26 (327)
T ss_pred cccccCCCcccCCC---cccccCC
Confidence 55667777777776 5655443
No 194
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=21.41 E-value=1.3e+02 Score=24.66 Aligned_cols=41 Identities=12% Similarity=0.062 Sum_probs=25.0
Q ss_pred hCCCcccchhH-HHHHHHhhhhhheeeeeeeeeecCCccHHHHHHHHHH
Q 028601 124 FGVDPLQAGNV-VEVIVVLGLTLGWVSTYIFRVSNKEMTYAQQLRDYED 171 (207)
Q Consensus 124 ~GlD~~~AGiw-sQ~lLVlGlvVgWv~SYLfRV~tk~MTY~qQ~kdYE~ 171 (207)
+|++. .++ .|++-++ ++.|++-|++. .-=+.++++|+++=.
T Consensus 20 f~~n~---~~~~~~~Infl--ill~lL~~fl~--kPI~~~l~~R~~~I~ 61 (184)
T CHL00019 20 FGFNT---DILETNLINLS--VVLGVLIYFGK--GVLSDLLDNRKQTIL 61 (184)
T ss_pred cCCcc---hHHHHHHHHHH--HHHHHHHHHhH--hHHHHHHHHHHHHHH
Confidence 46654 454 5666665 47888877543 223457788887753
No 195
>COG2177 FtsX Cell division protein [Cell division and chromosome partitioning]
Probab=21.33 E-value=1e+02 Score=28.04 Aligned_cols=30 Identities=13% Similarity=0.493 Sum_probs=21.6
Q ss_pred HhCCCcccchhHHHHHHHhhhhhheeeeee
Q 028601 123 LFGVDPLQAGNVVEVIVVLGLTLGWVSTYI 152 (207)
Q Consensus 123 ~~GlD~~~AGiwsQ~lLVlGlvVgWv~SYL 152 (207)
.++++....--.+=.++++|.+++|+++|.
T Consensus 260 ~~~~~~~~~l~l~~~~~~iG~~~~~l~s~~ 289 (297)
T COG2177 260 LLGLGLDEVLLLLGILLLIGVLIAWLASLR 289 (297)
T ss_pred hhcCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356666666666677777888889988864
No 196
>PHA01080 hypothetical protein
Probab=21.25 E-value=48 Score=25.83 Aligned_cols=31 Identities=26% Similarity=0.478 Sum_probs=20.2
Q ss_pred hHHhCCCcccchhHHHHHHHhhhhhheeeee
Q 028601 121 LELFGVDPLQAGNVVEVIVVLGLTLGWVSTY 151 (207)
Q Consensus 121 Lq~~GlD~~~AGiwsQ~lLVlGlvVgWv~SY 151 (207)
++..+++|.++|.+-.+.+..-+++|++++|
T Consensus 39 ~~~~~itpt~~~qaFglgF~~V~~lgyls~Y 69 (80)
T PHA01080 39 MSYTRITPTDAGTAFSFGFMAVFALGYLSTY 69 (80)
T ss_pred HHHhccCHHHHHHHHhhhHHHHHHhhhhHHH
Confidence 5677777777777666666555555666655
No 197
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.20 E-value=82 Score=31.51 Aligned_cols=22 Identities=27% Similarity=0.374 Sum_probs=17.4
Q ss_pred cCCccHHHHHHHHHHHHHHHHH
Q 028601 157 NKEMTYAQQLRDYEDKVMQKRL 178 (207)
Q Consensus 157 tk~MTY~qQ~kdYE~avLQKRl 178 (207)
.+-|+-.|||.||+..-++|++
T Consensus 307 ~~~~~ltqqwed~R~pll~kkl 328 (521)
T KOG1937|consen 307 KQMEELTQQWEDTRQPLLQKKL 328 (521)
T ss_pred HHHHHHHHHHHHHhhhHHHHHH
Confidence 3457999999999977777664
No 198
>PF14164 YqzH: YqzH-like protein
Probab=21.15 E-value=1.1e+02 Score=22.86 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=19.3
Q ss_pred hcCCHHHHHHHHHHHHHHHhccc
Q 028601 179 EGLTEAELEALIEQVEEEKRRLA 201 (207)
Q Consensus 179 eeLtpEEle~L~aEIE~Ek~~~~ 201 (207)
..||++|++.|-+.|.+.+.+.+
T Consensus 24 ~pls~~E~~~L~~~i~~~~~~~~ 46 (64)
T PF14164_consen 24 MPLSDEEWEELCKHIQERKNEEP 46 (64)
T ss_pred CCCCHHHHHHHHHHHHHHHhcCC
Confidence 46899999999999998776654
No 199
>PF07835 COX4_pro_2: Bacterial aa3 type cytochrome c oxidase subunit IV; InterPro: IPR012422 Bacterial cytochrome c oxidase is found bound to the to the cell membrane, where it is involved in the generation of the transmembrane proton electrochemical gradient. It is composed of four subunits. Subunit IV consists of one transmembrane helix that does not interact directly with the other subunits, but maintains its position by indirect contacts via phospholipid molecules found in the structure. The function of subunit IV is as yet unknown []. ; PDB: 1QLE_D 1M57_J 1M56_J.
Probab=21.12 E-value=68 Score=21.88 Aligned_cols=14 Identities=29% Similarity=0.513 Sum_probs=9.9
Q ss_pred cCCccHHHHHHHHH
Q 028601 157 NKEMTYAQQLRDYE 170 (207)
Q Consensus 157 tk~MTY~qQ~kdYE 170 (207)
-+.|.|.+|.+.|+
T Consensus 6 ~g~MD~~~he~Ty~ 19 (44)
T PF07835_consen 6 AGEMDIAEHEKTYD 19 (44)
T ss_dssp TT-S--HHHHHHHH
T ss_pred CCCCCHHHHHHHHH
Confidence 47899999999998
No 200
>PF06374 NDUF_C2: NADH-ubiquinone oxidoreductase subunit b14.5b (NDUFC2); InterPro: IPR009423 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This family consists of several NADH-ubiquinone oxidoreductase subunit b14.5b proteins.; GO: 0008137 NADH dehydrogenase (ubiquinone) activity, 0006120 mitochondrial electron transport, NADH to ubiquinone, 0005743 mitochondrial inner membrane
Probab=21.00 E-value=2.2e+02 Score=23.22 Aligned_cols=23 Identities=22% Similarity=0.549 Sum_probs=17.2
Q ss_pred CCccc-chhHHHHHHHhhhhhheeeee
Q 028601 126 VDPLQ-AGNVVEVIVVLGLTLGWVSTY 151 (207)
Q Consensus 126 lD~~~-AGiwsQ~lLVlGlvVgWv~SY 151 (207)
=-+.- ||+--|++++. +||...|
T Consensus 47 rRP~~~sGihr~ll~~t---~g~~~Gy 70 (117)
T PF06374_consen 47 RRPPLKSGIHRQLLLAT---IGWFIGY 70 (117)
T ss_pred cCCchhhccHHHHHHHH---HHHHHHH
Confidence 34555 99999998876 5777776
No 201
>cd06660 Aldo_ket_red Aldo-keto reductases (AKRs) are a superfamily of soluble NAD(P)(H) oxidoreductases whose chief purpose is to reduce aldehydes and ketones to primary and secondary alcohols. AKRs are present in all phyla and are of importance to both health and industrial applications. Members have very distinct functions and include the prokaryotic 2,5-diketo-D-gluconic acid reductases and beta-keto ester reductases, the eukaryotic aldose reductases, aldehyde reductases, hydroxysteroid dehydrogenases, steroid 5beta-reductases, potassium channel beta-subunits and aflatoxin aldehyde reductases, among others.
Probab=20.91 E-value=97 Score=25.65 Aligned_cols=43 Identities=19% Similarity=0.244 Sum_probs=31.8
Q ss_pred hhheeeee--eeeeecCCccHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 028601 144 TLGWVSTY--IFRVSNKEMTYAQQLRDYEDKVMQKRLEGLTEAELEALIE 191 (207)
Q Consensus 144 vVgWv~SY--LfRV~tk~MTY~qQ~kdYE~avLQKRleeLtpEEle~L~a 191 (207)
++.|+.+. +.-|+.+ |+-.+|+++.=++. .-.||+||++.|.+
T Consensus 240 al~~~l~~p~~~~~i~g-~~~~~~l~~n~~~~----~~~L~~~~~~~l~~ 284 (285)
T cd06660 240 ALRWLLQQPGVTSVIPG-ASSPERLEENLAAL----DFELSDEDLAALDA 284 (285)
T ss_pred HHHHHhcCCCCeEEEeC-CCCHHHHHHHHhhc----cCCCCHHHHHHHhh
Confidence 46677777 6666665 77788888766554 46899999998754
No 202
>KOG3882 consensus Tetraspanin family integral membrane protein [General function prediction only]
Probab=20.89 E-value=1.4e+02 Score=24.60 Aligned_cols=23 Identities=17% Similarity=0.174 Sum_probs=16.8
Q ss_pred ccchhhhhhhHHHHHHHHHHHHh
Q 028601 98 YTRKDVLLIGVGVTVIGYGLKSG 120 (207)
Q Consensus 98 MtR~DVI~IGlgvfllGg~lY~g 120 (207)
.--.-.|.+|..++++|.++..|
T Consensus 51 ~~~~ili~~G~v~~~v~flGc~G 73 (237)
T KOG3882|consen 51 VPAYILIAVGGVVFLVGFLGCCG 73 (237)
T ss_pred cchhhhhhhhHHHHHHHHhhhhh
Confidence 34456778888888888887665
No 203
>PRK13183 psbN photosystem II reaction center protein N; Provisional
Probab=20.89 E-value=64 Score=22.83 Aligned_cols=29 Identities=14% Similarity=0.021 Sum_probs=23.1
Q ss_pred ccchhhhhhhHHHHHHHHHHHHhhHHhCC
Q 028601 98 YTRKDVLLIGVGVTVIGYGLKSGLELFGV 126 (207)
Q Consensus 98 MtR~DVI~IGlgvfllGg~lY~gLq~~Gl 126 (207)
|.-.-++.|.+..+++|.-+|....++|=
T Consensus 4 me~A~~~~i~i~~lL~~~TgyaiYtaFGp 32 (46)
T PRK13183 4 MSPALSLAITILAILLALTGFGIYTAFGP 32 (46)
T ss_pred cchhHHHHHHHHHHHHHHhhheeeeccCC
Confidence 44456788899999999888888888883
No 204
>PRK08317 hypothetical protein; Provisional
Probab=20.84 E-value=4.1e+02 Score=20.65 Aligned_cols=71 Identities=20% Similarity=0.230 Sum_probs=40.3
Q ss_pred CcccchhHHHHHHHhhhhhheeeeeeeeeec-CCccHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 028601 127 DPLQAGNVVEVIVVLGLTLGWVSTYIFRVSN-KEMTYAQQLRDYEDKVMQKRLEGLTEAELEALIEQVEEEKRR 199 (207)
Q Consensus 127 D~~~AGiwsQ~lLVlGlvVgWv~SYLfRV~t-k~MTY~qQ~kdYE~avLQKRleeLtpEEle~L~aEIE~Ek~~ 199 (207)
++....-|.+.+--.|+...++-.+-+-... ....+...+.++-....+ -..++++|++++.++++++...
T Consensus 153 ~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~ 224 (241)
T PRK08317 153 DPWLGRRLPGLFREAGLTDIEVEPYTLIETDLKEADKGFGLIRAARRAVE--AGGISADEADAWLADLAQLARA 224 (241)
T ss_pred CCcHHHHHHHHHHHcCCCceeEEEEEEeccCcchhhHHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHHHhc
Confidence 3333445666666666666666554332211 111233333333333332 4678999999999999986643
No 205
>PF03419 Peptidase_U4: Sporulation factor SpoIIGA This family belongs to family U4 of the peptidase classification.; InterPro: IPR005081 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This group of peptidases belong to the MEROPS peptidase family U4 (SpoIIGA peptidase family, clan U-). Sporulation in bacteria such as Bacillus subtilis involves the formation of a polar septum, which divides the sporangium into a mother cell and a forespore. The sigma E factor, which is encoded within the spoIIG operon, is a cell-specific regulatory protein that directs gene transcription in the mother cell. Sigma E is synthesised as an inactive proprotein pro-sigma E, which is converted to the mature factor by the putative processing enzyme SpoIIGA []. ; GO: 0004190 aspartic-type endopeptidase activity, 0006508 proteolysis, 0030436 asexual sporulation
Probab=20.06 E-value=97 Score=27.10 Aligned_cols=50 Identities=12% Similarity=0.179 Sum_probs=27.3
Q ss_pred hhhhhhhHHHHHHHHHHHHhhHHhCCCcc-cchhH----HHHHHHhhhhhheeee
Q 028601 101 KDVLLIGVGVTVIGYGLKSGLELFGVDPL-QAGNV----VEVIVVLGLTLGWVST 150 (207)
Q Consensus 101 ~DVI~IGlgvfllGg~lY~gLq~~GlD~~-~AGiw----sQ~lLVlGlvVgWv~S 150 (207)
+.++..=+.-|++||+.+......+-+.. ..|+. +-..+++|+.++|...
T Consensus 86 k~~~~fy~~sf~~gG~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 140 (293)
T PF03419_consen 86 KALLIFYLVSFLLGGIMFALYYFLRSGGFIQNGIFYFNISWLFLLIGFIIAYLLL 140 (293)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCcchhccceeeccchHHHHHHHHHHHHHHH
Confidence 34444455566788788777666666555 33332 2344444445565433
No 206
>PF13347 MFS_2: MFS/sugar transport protein
Probab=20.02 E-value=67 Score=28.09 Aligned_cols=69 Identities=20% Similarity=0.216 Sum_probs=37.3
Q ss_pred CCCCccccchhhhhhhHHHHHHHHHHHHhhHHhCCCcccchhHHHHHHHhhhhhheeeeee-eeeecCCccH
Q 028601 92 TETPFGYTRKDVLLIGVGVTVIGYGLKSGLELFGVDPLQAGNVVEVIVVLGLTLGWVSTYI-FRVSNKEMTY 162 (207)
Q Consensus 92 ~~~pFgMtR~DVI~IGlgvfllGg~lY~gLq~~GlD~~~AGiwsQ~lLVlGlvVgWv~SYL-fRV~tk~MTY 162 (207)
.++.|| ||+-.+++|..+..+++.+...-.-.+++....-.|.=+.+++ .-++|+...+ ++...-+||-
T Consensus 64 ~~tr~G-rrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~~~~~~~~~~l-~~~~~t~~~i~~~al~~~lt~ 133 (428)
T PF13347_consen 64 TRTRWG-RRRPWILIGAILLALSFFLLFSPPPAGLSFTAKLVWLFVFYIL-FDIAYTFVQIPYNALIPELTP 133 (428)
T ss_pred eccccc-ccceEeehhhHHHHHHHHHhhccccchhhhhhHHHHHHHHHHH-HHHhhhhccCchhhcCccccc
Confidence 346788 7777888887777776554442212344444444554333332 3455655443 2445556664
Done!