Query 028601
Match_columns 207
No_of_seqs 77 out of 79
Neff 2.5
Searched_HMMs 29240
Date Mon Mar 25 23:35:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028601.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028601hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1sf9_A YFHH hypothetical prote 90.1 0.21 7.3E-06 40.2 3.3 36 170-205 21-56 (128)
2 3eff_K Voltage-gated potassium 88.5 1.4 4.8E-05 32.8 6.7 39 164-202 98-136 (139)
3 3oop_A LIN2960 protein; protei 83.1 3 0.0001 29.5 5.9 100 94-195 31-137 (143)
4 3s2w_A Transcriptional regulat 78.4 4.6 0.00016 29.2 5.6 100 94-195 44-150 (159)
5 2nyx_A Probable transcriptiona 77.9 6.3 0.00021 29.0 6.3 99 95-195 40-145 (168)
6 3eco_A MEPR; mutlidrug efflux 75.2 6.9 0.00024 27.3 5.6 100 94-195 25-133 (139)
7 3k0l_A Repressor protein; heli 74.5 10 0.00036 27.5 6.6 74 121-195 67-146 (162)
8 1lj9_A Transcriptional regulat 74.2 7.6 0.00026 27.2 5.6 97 94-195 23-129 (144)
9 2eth_A Transcriptional regulat 74.1 7 0.00024 28.1 5.5 98 94-196 38-145 (154)
10 3pjs_K KCSA, voltage-gated pot 73.1 3.6 0.00012 31.8 4.0 40 165-204 126-165 (166)
11 3nrv_A Putative transcriptiona 71.9 4.7 0.00016 28.5 4.1 100 94-195 34-140 (148)
12 2yxy_A Hypothetical conserved 71.2 0.64 2.2E-05 36.8 -0.6 29 175-203 8-36 (115)
13 2gxg_A 146AA long hypothetical 70.9 6.8 0.00023 27.4 4.7 96 94-195 31-136 (146)
14 2fbi_A Probable transcriptiona 70.1 7.4 0.00025 27.0 4.7 100 95-196 31-137 (142)
15 3tgn_A ADC operon repressor AD 69.9 13 0.00046 25.9 6.1 99 94-195 32-140 (146)
16 3e6m_A MARR family transcripti 68.2 9.2 0.00032 27.7 5.1 71 122-196 75-154 (161)
17 2lw1_A ABC transporter ATP-bin 68.0 15 0.00051 26.2 6.1 39 156-195 12-67 (89)
18 2fa5_A Transcriptional regulat 67.8 7.4 0.00025 27.9 4.5 70 122-195 71-149 (162)
19 3jw4_A Transcriptional regulat 67.5 7.3 0.00025 27.7 4.3 74 121-195 64-143 (148)
20 4aik_A Transcriptional regulat 67.3 13 0.00044 27.5 5.8 97 94-195 25-132 (151)
21 3bja_A Transcriptional regulat 67.1 16 0.00056 25.1 6.0 97 94-195 27-133 (139)
22 3deu_A Transcriptional regulat 66.7 19 0.00065 26.6 6.7 74 121-195 75-154 (166)
23 3bj6_A Transcriptional regulat 66.5 12 0.0004 26.5 5.2 96 95-195 35-140 (152)
24 2rdp_A Putative transcriptiona 65.6 19 0.00064 25.3 6.2 97 95-196 37-143 (150)
25 3s5m_A Falcilysin; M16 metallo 65.4 8.6 0.0003 38.9 5.8 40 156-195 584-623 (1193)
26 2a61_A Transcriptional regulat 63.3 12 0.00043 26.0 4.8 97 94-195 27-133 (145)
27 2xrh_A Protein HP0721; unknown 63.2 11 0.00037 29.1 4.8 40 158-198 43-85 (100)
28 3bpv_A Transcriptional regulat 63.2 16 0.00054 25.2 5.3 97 94-195 23-129 (138)
29 2q97_T Toxofilin, actin, alpha 63.1 8.5 0.00029 30.8 4.3 34 163-198 65-98 (129)
30 3g3z_A NMB1585, transcriptiona 63.0 12 0.00043 26.3 4.8 97 94-195 25-131 (145)
31 3bro_A Transcriptional regulat 62.8 18 0.0006 25.1 5.5 71 121-195 57-136 (141)
32 3h90_A Ferrous-iron efflux pum 61.0 5.5 0.00019 32.7 3.0 23 92-114 62-87 (283)
33 1s3j_A YUSO protein; structura 60.5 19 0.00066 25.4 5.5 96 95-195 32-137 (155)
34 2rq5_A Protein jumonji; develo 59.2 6.4 0.00022 30.2 2.9 81 96-200 37-119 (121)
35 3j1z_P YIIP, cation efflux fam 56.9 6.7 0.00023 33.0 2.9 31 92-122 71-105 (306)
36 3u2r_A Regulatory protein MARR 55.9 21 0.00073 26.0 5.2 74 121-195 69-148 (168)
37 3nqo_A MARR-family transcripti 54.5 27 0.00092 26.4 5.7 71 121-195 64-143 (189)
38 3boq_A Transcriptional regulat 54.2 29 0.00098 24.7 5.5 77 121-198 69-151 (160)
39 3fm5_A Transcriptional regulat 54.1 29 0.001 24.6 5.5 71 121-195 61-140 (150)
40 3ech_A MEXR, multidrug resista 50.3 37 0.0013 23.8 5.5 98 96-195 33-137 (142)
41 3hls_A Guanylate cyclase solub 49.0 15 0.00052 25.6 3.2 26 173-199 21-46 (66)
42 2fbh_A Transcriptional regulat 48.9 37 0.0013 23.5 5.2 74 121-195 59-138 (146)
43 2nnn_A Probable transcriptiona 47.9 35 0.0012 23.4 5.0 70 121-194 59-137 (140)
44 1jgs_A Multiple antibiotic res 47.8 26 0.00089 24.2 4.3 96 94-194 28-134 (138)
45 2hr3_A Probable transcriptiona 47.1 51 0.0018 22.9 5.8 97 95-195 30-137 (147)
46 3kkj_A Amine oxidase, flavin-c 46.5 4.8 0.00016 27.7 0.3 28 98-128 1-28 (336)
47 1g6u_A Domain swapped dimer; d 45.6 13 0.00046 25.2 2.4 20 177-196 13-32 (48)
48 3lfp_A CSP231I C protein; tran 44.5 38 0.0013 22.9 4.7 55 125-196 41-95 (98)
49 3cjn_A Transcriptional regulat 44.3 57 0.002 23.2 5.8 72 122-197 74-154 (162)
50 2g9w_A Conserved hypothetical 43.5 26 0.0009 25.5 4.0 24 172-195 98-121 (138)
51 1uw0_A DNA ligase III; DNA rep 41.5 18 0.00062 27.4 2.9 23 178-200 79-101 (117)
52 1b0n_A Protein (SINR protein); 41.3 58 0.002 21.9 5.2 70 124-198 36-107 (111)
53 2dmj_A Poly (ADP-ribose) polym 40.4 14 0.00049 27.4 2.1 24 178-201 81-104 (106)
54 3kp7_A Transcriptional regulat 39.4 47 0.0016 23.5 4.7 96 94-195 32-139 (151)
55 3oz2_A Digeranylgeranylglycero 37.1 7.6 0.00026 30.6 0.2 29 97-127 1-29 (397)
56 3h4p_a Proteasome subunit beta 37.1 7.8 0.00027 30.9 0.2 25 177-201 186-210 (219)
57 2qww_A Transcriptional regulat 36.3 28 0.00097 24.6 3.1 71 121-195 62-145 (154)
58 3eff_K Voltage-gated potassium 36.1 4.8 0.00016 29.9 -1.1 30 163-193 105-134 (139)
59 3ayf_A Nitric oxide reductase; 36.1 17 0.00058 35.8 2.4 34 166-199 111-144 (800)
60 1utr_A Uteroglobin; clara cell 36.0 25 0.00085 25.7 2.8 36 160-195 40-83 (96)
61 3kh1_A Predicted metal-depende 36.0 26 0.00088 28.7 3.2 40 156-195 81-128 (200)
62 3pjs_K KCSA, voltage-gated pot 35.7 10 0.00036 29.2 0.7 25 171-196 140-164 (166)
63 2vqe_M 30S ribosomal protein S 35.1 14 0.00049 28.9 1.4 21 175-195 42-62 (126)
64 3cdh_A Transcriptional regulat 35.0 21 0.00072 25.4 2.2 70 122-195 65-143 (155)
65 3ukm_A Potassium channel subfa 35.0 71 0.0024 27.5 5.9 21 176-196 55-75 (280)
66 3bdd_A Regulatory protein MARR 34.8 31 0.0011 23.7 3.0 71 121-195 52-132 (142)
67 3lqv_P Splicing factor 3B subu 34.2 24 0.00082 23.3 2.2 26 165-190 6-32 (39)
68 1jw2_A Hemolysin expression mo 34.1 1.2E+02 0.0042 22.1 6.2 47 157-203 3-57 (72)
69 3cgv_A Geranylgeranyl reductas 34.1 9.1 0.00031 30.7 0.2 28 97-126 1-28 (397)
70 1r73_A TM1492, 50S ribosomal p 34.0 28 0.00095 24.1 2.6 20 177-196 5-24 (66)
71 3ivp_A Putative transposon-rel 33.1 54 0.0019 23.1 4.1 62 124-195 47-108 (126)
72 1jfi_B DR1 protein, transcript 32.6 71 0.0024 26.3 5.3 63 121-195 61-130 (179)
73 3fz4_A Putative arsenate reduc 32.6 34 0.0012 25.2 3.1 25 168-192 66-90 (120)
74 1v9x_A Poly (ADP-ribose) polym 31.4 13 0.00044 28.4 0.6 24 177-200 74-97 (114)
75 3rp8_A Flavoprotein monooxygen 31.0 9.1 0.00031 31.6 -0.3 32 94-127 17-48 (407)
76 1utg_A Uteroglobin; steroid bi 30.9 54 0.0018 22.7 3.7 35 161-195 20-62 (70)
77 3iz6_M 40S ribosomal protein S 30.3 17 0.00057 29.3 1.1 21 175-195 53-73 (152)
78 3j20_O 30S ribosomal protein S 30.2 18 0.0006 29.1 1.2 22 175-196 48-69 (148)
79 3ngm_A Extracellular lipase; s 30.0 30 0.001 29.9 2.8 39 164-202 272-312 (319)
80 3od8_A Poly [ADP-ribose] polym 29.9 24 0.00083 27.2 1.9 20 176-195 92-111 (116)
81 3odc_A Poly [ADP-ribose] polym 29.8 13 0.00046 28.2 0.5 21 178-198 81-101 (111)
82 4ham_A LMO2241 protein; struct 29.0 97 0.0033 22.5 5.0 28 170-197 99-126 (134)
83 2fbk_A Transcriptional regulat 28.9 76 0.0026 23.4 4.5 102 94-196 63-173 (181)
84 4h33_A LMO2059 protein; bilaye 28.6 12 0.00041 28.2 0.0 19 174-192 115-133 (137)
85 2e0t_A Dual specificity phosph 28.4 19 0.00066 25.9 1.1 24 154-177 126-149 (151)
86 2jns_A Bromodomain-containing 28.3 70 0.0024 22.9 4.1 34 157-196 15-48 (90)
87 1wz6_A HMG-box transcription f 28.0 78 0.0027 21.3 4.1 29 171-199 39-67 (82)
88 2bv6_A MGRA, HTH-type transcri 28.0 63 0.0022 22.4 3.7 98 95-196 32-136 (142)
89 1hry_A Human SRY; DNA, DNA-bin 27.9 81 0.0028 20.7 4.1 29 171-199 36-64 (76)
90 2ki0_A DS119; beta-alpha-beta, 27.6 40 0.0014 21.7 2.3 15 182-196 13-27 (36)
91 3zs9_C Golgi to ER traffic pro 27.4 51 0.0017 21.6 2.8 20 179-198 2-21 (38)
92 1q5q_H Proteasome beta-type su 27.4 32 0.0011 27.6 2.3 24 178-201 202-225 (235)
93 1vq8_V 50S ribosomal protein L 27.3 42 0.0014 23.6 2.6 21 177-197 8-28 (71)
94 3fgh_A Transcription factor A, 27.0 88 0.003 20.2 4.1 28 171-198 30-57 (67)
95 2zjr_V 50S ribosomal protein L 27.0 34 0.0012 23.8 2.1 19 178-196 6-24 (67)
96 3gkx_A Putative ARSC family re 26.9 31 0.0011 25.4 2.0 25 168-192 67-91 (120)
97 1sd4_A Penicillinase repressor 26.6 78 0.0027 21.8 4.0 18 179-196 106-123 (126)
98 3u5c_S 40S ribosomal protein S 26.5 17 0.00057 29.2 0.5 21 175-195 55-75 (146)
99 2cs1_A PMS1 protein homolog 1; 26.5 1.1E+02 0.0037 21.2 4.7 27 171-197 39-65 (92)
100 4a3n_A Transcription factor SO 26.0 89 0.003 20.0 3.9 29 171-199 34-62 (71)
101 2xzm_M RPS18E; ribosome, trans 25.8 21 0.00071 28.9 0.9 21 175-195 55-75 (155)
102 2eqz_A High mobility group pro 25.8 87 0.003 21.3 4.0 27 172-198 50-76 (86)
103 1ccd_A Clara cell 17 KD protei 25.7 52 0.0018 23.3 2.9 35 161-195 22-64 (77)
104 3j21_W 50S ribosomal protein L 25.7 54 0.0018 23.1 3.0 21 177-197 5-25 (72)
105 3r8n_M 30S ribosomal protein S 25.7 20 0.00069 27.5 0.8 19 175-193 41-59 (114)
106 3v2d_2 50S ribosomal protein L 25.7 54 0.0018 23.1 3.0 22 176-197 11-32 (72)
107 1ryp_D 20S proteasome; multica 25.6 29 0.001 27.7 1.8 22 178-199 219-240 (241)
108 1okr_A MECI, methicillin resis 25.1 97 0.0033 21.2 4.2 21 174-194 99-121 (123)
109 3r8s_Y 50S ribosomal protein L 24.9 29 0.00099 23.8 1.4 19 178-196 6-24 (63)
110 4gde_A UDP-galactopyranose mut 24.9 17 0.00058 30.5 0.2 26 101-127 11-36 (513)
111 1gt0_D Transcription factor SO 24.7 97 0.0033 20.6 4.0 28 171-198 34-61 (80)
112 1j2p_A Alpha-ring, proteasome 24.6 36 0.0012 27.3 2.2 24 177-200 220-243 (246)
113 2rdq_A 1-deoxypentalenic acid 24.5 14 0.00049 29.4 -0.3 41 153-196 11-55 (288)
114 4b8x_A SCO5413, possible MARR- 24.0 65 0.0022 23.3 3.3 93 94-195 29-136 (147)
115 2lef_A LEF-1 HMG, protein (lym 23.5 1.1E+02 0.0038 20.7 4.2 28 171-198 34-61 (86)
116 2jp3_A FXYD domain-containing 23.4 80 0.0027 22.8 3.5 29 90-118 4-36 (67)
117 2e6o_A HMG box-containing prot 23.3 91 0.0031 21.4 3.8 27 172-198 50-76 (87)
118 2qe9_A Uncharacterized protein 23.2 79 0.0027 23.5 3.7 27 161-187 18-47 (178)
119 1ryp_E 20S proteasome; multica 22.5 46 0.0016 26.5 2.4 22 178-199 220-241 (242)
120 1qle_D Cytochrome AA3, ccytoch 22.2 33 0.0011 22.5 1.2 14 157-170 5-18 (43)
121 3kin_B Kinesin heavy chain; mo 21.9 1.7E+02 0.006 21.8 5.4 40 155-197 77-116 (117)
122 1wgf_A Upstream binding factor 21.9 96 0.0033 21.4 3.7 29 171-199 52-80 (90)
123 3jyw_X 60S ribosomal protein L 21.6 43 0.0015 24.7 1.9 21 176-196 6-26 (86)
124 3eev_A Chloramphenicol acetylt 21.2 14 0.00049 28.8 -0.8 27 171-197 184-210 (212)
125 2a9u_A Ubiquitin carboxyl-term 21.1 1.2E+02 0.004 23.9 4.4 13 168-180 114-126 (144)
126 3u2b_C Transcription factor SO 21.1 1.2E+02 0.0041 19.9 3.9 28 171-198 34-61 (79)
127 3lov_A Protoporphyrinogen oxid 20.9 19 0.00064 30.3 -0.3 27 97-125 1-27 (475)
128 3ezz_A Dual specificity protei 20.5 52 0.0018 23.5 2.1 20 155-174 124-143 (144)
129 1h1o_A Cytochrome C-552; elect 20.3 1.5E+02 0.0053 21.5 4.7 31 163-193 145-180 (183)
130 1v63_A Nucleolar transcription 20.2 1.2E+02 0.0042 21.6 4.0 14 179-192 76-89 (101)
No 1
>1sf9_A YFHH hypothetical protein; structural genomics, unknown function, PSI, protein structure initiative, midwest center for structural genomics; 1.71A {Bacillus subtilis} SCOP: b.34.15.1
Probab=90.09 E-value=0.21 Score=40.15 Aligned_cols=36 Identities=25% Similarity=0.350 Sum_probs=27.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHhccccCCC
Q 028601 170 EDKVMQKRLEGLTEAELEALIEQVEEEKRRLASGEQ 205 (207)
Q Consensus 170 E~avLQKRleeLtpEEle~L~aEIE~Ek~~~~~~~~ 205 (207)
....|+||+.+||++||+.-.+.+.++...+.+...
T Consensus 21 ~~~~mekrySeMS~~EL~~EI~~L~EKaRKAEq~Gi 56 (128)
T 1sf9_A 21 QSNAMEKRYSQMTPHELNTEIALLSEKARKAEQHGI 56 (128)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred ecchhhHHHHHcCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 355689999999999999888888776655554433
No 2
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=88.54 E-value=1.4 Score=32.84 Aligned_cols=39 Identities=23% Similarity=0.143 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcccc
Q 028601 164 QQLRDYEDKVMQKRLEGLTEAELEALIEQVEEEKRRLAS 202 (207)
Q Consensus 164 qQ~kdYE~avLQKRleeLtpEEle~L~aEIE~Ek~~~~~ 202 (207)
+++++......++...++-.++.++|.+++++.+++..+
T Consensus 98 ~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~le~~~~~ 136 (139)
T 3eff_K 98 QERRGHFVRHSEKAAEEAYTRTTRALHERFDRLERMLDD 136 (139)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344444445556656556666778888888875554443
No 3
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=83.11 E-value=3 Score=29.47 Aligned_cols=100 Identities=14% Similarity=0.126 Sum_probs=62.4
Q ss_pred CCccccchhhhhhhHHHHHHHHHHH-HhhHHhCCCcccchhHHHHHHHhhhhhheee------eeeeeeecCCccHHHHH
Q 028601 94 TPFGYTRKDVLLIGVGVTVIGYGLK-SGLELFGVDPLQAGNVVEVIVVLGLTLGWVS------TYIFRVSNKEMTYAQQL 166 (207)
Q Consensus 94 ~pFgMtR~DVI~IGlgvfllGg~lY-~gLq~~GlD~~~AGiwsQ~lLVlGlvVgWv~------SYLfRV~tk~MTY~qQ~ 166 (207)
.++|++..+...+-...-- |+.-. -.-..+|++.........-+.=-|+ |-..- .+.++.--+-..+.++.
T Consensus 31 ~~~~lt~~~~~iL~~l~~~-~~~t~~eLa~~l~~~~~~vs~~l~~L~~~Gl-v~r~~~~~D~R~~~~~LT~~G~~~~~~~ 108 (143)
T 3oop_A 31 ASYDVTPEQWSVLEGIEAN-EPISQKEIALWTKKDTPTVNRIVDVLLRKEL-IVREISTEDRRISLLSLTDKGRKETTEL 108 (143)
T ss_dssp TTSSSCHHHHHHHHHHHHH-SSEEHHHHHHHHTCCHHHHHHHHHHHHHTTS-EEEEC----CCSCEEEECHHHHHHHHHH
T ss_pred hhCCCCHHHHHHHHHHHHc-CCcCHHHHHHHHCCCHhhHHHHHHHHHHCCC-eeccCCCccCceeeeeECHHHHHHHHHH
Confidence 3678877776544433211 32222 2245788887766666666655554 21111 22334444445677778
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 028601 167 RDYEDKVMQKRLEGLTEAELEALIEQVEE 195 (207)
Q Consensus 167 kdYE~avLQKRleeLtpEEle~L~aEIE~ 195 (207)
....++..++-++.|+|||++.+.+-+++
T Consensus 109 ~~~~~~~~~~~~~~l~~~e~~~l~~~L~~ 137 (143)
T 3oop_A 109 RDIVEASCEKMFAGVTRTDLEQFTAILKN 137 (143)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 88888899999999999999999887765
No 4
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=78.36 E-value=4.6 Score=29.22 Aligned_cols=100 Identities=9% Similarity=0.080 Sum_probs=59.3
Q ss_pred CCccccchhhhhhhHHHHHHHHHH-HHhhHHhCCCcccchhHHHHHHHhhhhhheee------eeeeeeecCCccHHHHH
Q 028601 94 TPFGYTRKDVLLIGVGVTVIGYGL-KSGLELFGVDPLQAGNVVEVIVVLGLTLGWVS------TYIFRVSNKEMTYAQQL 166 (207)
Q Consensus 94 ~pFgMtR~DVI~IGlgvfllGg~l-Y~gLq~~GlD~~~AGiwsQ~lLVlGlvVgWv~------SYLfRV~tk~MTY~qQ~ 166 (207)
.++|++..+..++-...- -|+.- --.-..+|++...+.-.+.-+.=-|+ |-..- .+.++.-.+-..+.++.
T Consensus 44 ~~~~lt~~q~~vL~~l~~-~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Gl-v~r~~~~~DrR~~~l~LT~~G~~~~~~~ 121 (159)
T 3s2w_A 44 EPYGIGSGQFPFLMRLYR-EDGINQESLSDYLKIDKGTTARAIQKLVDEGY-VFRQRDEKDRRSYRVFLTEKGKKLEPDM 121 (159)
T ss_dssp GGGTCCTTTHHHHHHHHH-SCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTS-EEEEECC---CCEEEEECHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHH-CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCC-EEEecCCCCCCeeEEEECHHHHHHHHHH
Confidence 356676666444332211 12111 12244778877666666665555554 22211 22334444445667777
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 028601 167 RDYEDKVMQKRLEGLTEAELEALIEQVEE 195 (207)
Q Consensus 167 kdYE~avLQKRleeLtpEEle~L~aEIE~ 195 (207)
....++..++-++.+++||++.|.+-++.
T Consensus 122 ~~~~~~~~~~~~~~l~~~e~~~l~~~l~~ 150 (159)
T 3s2w_A 122 KKIASEWGEILFSSFDDRQRREITNSLEI 150 (159)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 77778888899999999999998887765
No 5
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=77.86 E-value=6.3 Score=29.04 Aligned_cols=99 Identities=16% Similarity=0.208 Sum_probs=59.0
Q ss_pred CccccchhhhhhhHHHHHHHHH-HHHhhHHhCCCcccchhHHHHHHHhhhhhheee------eeeeeeecCCccHHHHHH
Q 028601 95 PFGYTRKDVLLIGVGVTVIGYG-LKSGLELFGVDPLQAGNVVEVIVVLGLTLGWVS------TYIFRVSNKEMTYAQQLR 167 (207)
Q Consensus 95 pFgMtR~DVI~IGlgvfllGg~-lY~gLq~~GlD~~~AGiwsQ~lLVlGlvVgWv~------SYLfRV~tk~MTY~qQ~k 167 (207)
++|++..+..++-.+.- -|.. .--+-..+|++..++.-.++-+-=-|+ |-..- .+.+++--+-..+.++..
T Consensus 40 ~~~lt~~~~~iL~~L~~-~~~~t~~eLa~~l~is~~tvs~~l~~Le~~Gl-V~r~~~~~DrR~~~~~LT~~G~~~~~~~~ 117 (168)
T 2nyx_A 40 DENITIPQFRTLVILSN-HGPINLATLATLLGVQPSATGRMVDRLVGAEL-IDRLPHPTSRRELLAALTKRGRDVVRQVT 117 (168)
T ss_dssp CSSCCHHHHHHHHHHHH-HCSEEHHHHHHHHTSCHHHHHHHHHHHHHTTS-EEEEECSSCSSCEEEEECHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHH-cCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCC-EEeccCCCCCCeeEEEECHHHHHHHHHHH
Confidence 45666665544433221 1211 122245778877777666666666554 22211 123334344455667777
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 028601 168 DYEDKVMQKRLEGLTEAELEALIEQVEE 195 (207)
Q Consensus 168 dYE~avLQKRleeLtpEEle~L~aEIE~ 195 (207)
+...+.+++-++.|++||++.|.+-+++
T Consensus 118 ~~~~~~~~~~~~~l~~ee~~~l~~~L~~ 145 (168)
T 2nyx_A 118 EHRRTEIARIVEQMAPAERHGLVRALTA 145 (168)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 7778888899999999999888877765
No 6
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=75.17 E-value=6.9 Score=27.34 Aligned_cols=100 Identities=11% Similarity=0.038 Sum_probs=60.5
Q ss_pred CCccccchhhhhhhHHHHHHH--HH-HHHhhHHhCCCcccchhHHHHHHHhhhhhheee------eeeeeeecCCccHHH
Q 028601 94 TPFGYTRKDVLLIGVGVTVIG--YG-LKSGLELFGVDPLQAGNVVEVIVVLGLTLGWVS------TYIFRVSNKEMTYAQ 164 (207)
Q Consensus 94 ~pFgMtR~DVI~IGlgvfllG--g~-lY~gLq~~GlD~~~AGiwsQ~lLVlGlvVgWv~------SYLfRV~tk~MTY~q 164 (207)
.++|++..+...+....- -| +. .--.-..+|++...+.-...-+-=-|+ |-..- .+..+.-.+-..+.+
T Consensus 25 ~~~~lt~~~~~vL~~l~~-~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~~Gl-i~r~~~~~D~R~~~~~LT~~G~~~~~ 102 (139)
T 3eco_A 25 EQFDITNEQGHTLGYLYA-HQQDGLTQNDIAKALQRTGPTVSNLLRNLERKKL-IYRYVDAQDTRRKNIGLTTSGIKLVE 102 (139)
T ss_dssp GGGTCCHHHHHHHHHHHH-STTTCEEHHHHHHHHTCCHHHHHHHHHHHHHTTS-EEEEECCC--CCEEEEECHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHh-cCCCCcCHHHHHHHhCCCcccHHHHHHHHHHCCC-EeecCCCCCCCeeeeEECHHHHHHHH
Confidence 356776655444333221 11 11 112244778877766666666655554 22221 233444444466777
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 028601 165 QLRDYEDKVMQKRLEGLTEAELEALIEQVEE 195 (207)
Q Consensus 165 Q~kdYE~avLQKRleeLtpEEle~L~aEIE~ 195 (207)
+.....++..++-++.|+|+|++.|.+-+++
T Consensus 103 ~~~~~~~~~~~~~~~~l~~~e~~~l~~~l~~ 133 (139)
T 3eco_A 103 AFTSIFDEMEQTLVSQLSEEENEQMKANLTK 133 (139)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 7777778889999999999999998887765
No 7
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=74.53 E-value=10 Score=27.48 Aligned_cols=74 Identities=12% Similarity=0.133 Sum_probs=48.4
Q ss_pred hHHhCCCcccchhHHHHHHHhhhhhheee------eeeeeeecCCccHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 028601 121 LELFGVDPLQAGNVVEVIVVLGLTLGWVS------TYIFRVSNKEMTYAQQLRDYEDKVMQKRLEGLTEAELEALIEQVE 194 (207)
Q Consensus 121 Lq~~GlD~~~AGiwsQ~lLVlGlvVgWv~------SYLfRV~tk~MTY~qQ~kdYE~avLQKRleeLtpEEle~L~aEIE 194 (207)
-..+|++.....-.+.-+-=-|+ |--.- .++++.--+--.+.++......+..+.-++.|+|+|++.|.+-++
T Consensus 67 a~~l~~~~~tvs~~l~~Le~~Gl-v~r~~~~~DrR~~~l~LT~~G~~~~~~~~~~~~~~~~~~~~~l~~~e~~~l~~~L~ 145 (162)
T 3k0l_A 67 AERSFIKPQSANKILQDLLANGW-IEKAPDPTHGRRILVTVTPSGLDKLNQCNQVVQQLEAQMLQGVDINLAFLIRNNLE 145 (162)
T ss_dssp HHHHTSCGGGHHHHHHHHHHTTS-EEEEECCSSSCCEEEEECHHHHHHHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHCcC-eEecCCCCcCCeeEeEECHhHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 34777777766666666555554 11111 123333334455667777777888888899999999999888777
Q ss_pred H
Q 028601 195 E 195 (207)
Q Consensus 195 ~ 195 (207)
+
T Consensus 146 ~ 146 (162)
T 3k0l_A 146 L 146 (162)
T ss_dssp H
T ss_pred H
Confidence 6
No 8
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=74.15 E-value=7.6 Score=27.17 Aligned_cols=97 Identities=18% Similarity=0.133 Sum_probs=56.7
Q ss_pred CCccccchhhhhhhHHHHHHHHH-HHHhhHHhCCCcccchhHHHHHHHhhhhhheeeee---------eeeeecCCccHH
Q 028601 94 TPFGYTRKDVLLIGVGVTVIGYG-LKSGLELFGVDPLQAGNVVEVIVVLGLTLGWVSTY---------IFRVSNKEMTYA 163 (207)
Q Consensus 94 ~pFgMtR~DVI~IGlgvfllGg~-lY~gLq~~GlD~~~AGiwsQ~lLVlGlvVgWv~SY---------LfRV~tk~MTY~ 163 (207)
.++|++..+...+....- -|+. .--.-..+|++.....-...-+-=-| |+-.. .++.-.+-..+.
T Consensus 23 ~~~~lt~~~~~iL~~l~~-~~~~t~~~la~~l~~s~~~vs~~l~~Le~~g----li~r~~~~~d~R~~~~~lT~~G~~~~ 97 (144)
T 1lj9_A 23 KELSLTRGQYLYLVRVCE-NPGIIQEKIAELIKVDRTTAARAIKRLEEQG----FIYRQEDASNKKIKRIYATEKGKNVY 97 (144)
T ss_dssp GGGTCTTTHHHHHHHHHH-STTEEHHHHHHHHTCCHHHHHHHHHHHHHTT----SEEEEECSSCTTCEEEEECHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHH-CcCcCHHHHHHHHCCCHhHHHHHHHHHHHCC----CEEeecCCCCCceeeeEEChhHHHHH
Confidence 356777666554433221 1211 12224477877666555555555444 44332 233333344566
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 028601 164 QQLRDYEDKVMQKRLEGLTEAELEALIEQVEE 195 (207)
Q Consensus 164 qQ~kdYE~avLQKRleeLtpEEle~L~aEIE~ 195 (207)
++..+..++..+.-++.|++||++.+.+-++.
T Consensus 98 ~~~~~~~~~~~~~~~~~l~~~e~~~l~~~l~~ 129 (144)
T 1lj9_A 98 PIIVRENQHSNQVALQGLSEVEISQLADYLVR 129 (144)
T ss_dssp HHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 67777778888899999999999887766554
No 9
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=74.14 E-value=7 Score=28.09 Aligned_cols=98 Identities=14% Similarity=0.157 Sum_probs=56.8
Q ss_pred CCccccchhhhhhhHHHHHHHH-HHHHhhHHhCCCcccchhHHHHHHHhhhhhheeee---------eeeeeecCCccHH
Q 028601 94 TPFGYTRKDVLLIGVGVTVIGY-GLKSGLELFGVDPLQAGNVVEVIVVLGLTLGWVST---------YIFRVSNKEMTYA 163 (207)
Q Consensus 94 ~pFgMtR~DVI~IGlgvfllGg-~lY~gLq~~GlD~~~AGiwsQ~lLVlGlvVgWv~S---------YLfRV~tk~MTY~ 163 (207)
.++|++..+..++-...- -|. -.--+-..+|++.....-...-+.=-| ||.- +.+++-.+--.+.
T Consensus 38 ~~~~lt~~~~~iL~~l~~-~~~~t~~ela~~l~is~~tvs~~l~~Le~~G----li~r~~~~~d~R~~~~~lT~~G~~~~ 112 (154)
T 2eth_A 38 EISDMKTTELYAFLYVAL-FGPKKMKEIAEFLSTTKSNVTNVVDSLEKRG----LVVREMDPVDRRTYRVVLTEKGKEIF 112 (154)
T ss_dssp HHHHSBHHHHHHHHHHHH-HCCBCHHHHHHHTTSCHHHHHHHHHHHHHTT----SEEEEECTTTSSCEEEEECHHHHHHH
T ss_pred hhcCCCHHHHHHHHHHHH-cCCCCHHHHHHHHCCCHHHHHHHHHHHHHCC----CEEeeCCCCCcceeEEEECHHHHHHH
Confidence 467777666544433221 121 112234477776655555555444444 4432 2233333334456
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 028601 164 QQLRDYEDKVMQKRLEGLTEAELEALIEQVEEE 196 (207)
Q Consensus 164 qQ~kdYE~avLQKRleeLtpEEle~L~aEIE~E 196 (207)
++..+...+.+++-++.|++||++.|.+-+++-
T Consensus 113 ~~~~~~~~~~~~~~~~~l~~ee~~~l~~~L~~l 145 (154)
T 2eth_A 113 GEILSNFESLLKSVLEKFSEEDFKVVSEGFNRM 145 (154)
T ss_dssp HHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 666666678888889999999999988877763
No 10
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=73.15 E-value=3.6 Score=31.79 Aligned_cols=40 Identities=20% Similarity=0.121 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccccCC
Q 028601 165 QLRDYEDKVMQKRLEGLTEAELEALIEQVEEEKRRLASGE 204 (207)
Q Consensus 165 Q~kdYE~avLQKRleeLtpEEle~L~aEIE~Ek~~~~~~~ 204 (207)
++++..+...++...+.-.++.+.|.+++++.+++...++
T Consensus 126 ~~~~~~~~~~~~~~~~~l~~~i~~L~~~l~~le~~~~~~r 165 (166)
T 3pjs_K 126 QQQQQFVRHSEKAAEEAYTRTTRALHERFDRLERMLDDNR 165 (166)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 3333333444444444445667788888877666555544
No 11
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=71.94 E-value=4.7 Score=28.53 Aligned_cols=100 Identities=16% Similarity=0.161 Sum_probs=60.7
Q ss_pred CCccccchhhhhhhHHHHHHHHHHH-HhhHHhCCCcccchhHHHHHHHhhhhhheee------eeeeeeecCCccHHHHH
Q 028601 94 TPFGYTRKDVLLIGVGVTVIGYGLK-SGLELFGVDPLQAGNVVEVIVVLGLTLGWVS------TYIFRVSNKEMTYAQQL 166 (207)
Q Consensus 94 ~pFgMtR~DVI~IGlgvfllGg~lY-~gLq~~GlD~~~AGiwsQ~lLVlGlvVgWv~------SYLfRV~tk~MTY~qQ~ 166 (207)
.++|++..+..++.... --|..-. -.-..+|++.....-...-+-=-|+ |-..- .+.++.--+-..+.++.
T Consensus 34 ~~~~l~~~~~~iL~~l~-~~~~~t~~ela~~l~~~~~tvs~~l~~Le~~Gl-v~r~~~~~D~R~~~~~lT~~G~~~~~~~ 111 (148)
T 3nrv_A 34 QKFGIGMTEWRIISVLS-SASDCSVQKISDILGLDKAAVSRTVKKLEEKKY-IEVNGHSEDKRTYAINLTEMGQELYEVA 111 (148)
T ss_dssp GGGTCCHHHHHHHHHHH-HSSSBCHHHHHHHHTCCHHHHHHHHHHHHHTTS-EEC---------CCBEECHHHHHHHHHH
T ss_pred HhcCCCHHHHHHHHHHH-cCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCC-EEeecCCCCcceeEeEECHhHHHHHHHH
Confidence 46888887765544332 1121111 1245788877666655555555554 21111 23344444455567777
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 028601 167 RDYEDKVMQKRLEGLTEAELEALIEQVEE 195 (207)
Q Consensus 167 kdYE~avLQKRleeLtpEEle~L~aEIE~ 195 (207)
....++..+.-++.++++|++.|.+-+++
T Consensus 112 ~~~~~~~~~~~~~~l~~~e~~~l~~~l~~ 140 (148)
T 3nrv_A 112 SDFAIEREKQLLEEFEEAEKDQLFILLKK 140 (148)
T ss_dssp HHHTHHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 77778888999999999999998887765
No 12
>2yxy_A Hypothetical conserved protein, GK0453; alpha and beta proteins (A+B) class, structural GENO unknown function, NPPSFA; 2.20A {Geobacillus kaustophilus}
Probab=71.24 E-value=0.64 Score=36.79 Aligned_cols=29 Identities=31% Similarity=0.401 Sum_probs=22.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHhccccC
Q 028601 175 QKRLEGLTEAELEALIEQVEEEKRRLASG 203 (207)
Q Consensus 175 QKRleeLtpEEle~L~aEIE~Ek~~~~~~ 203 (207)
+||+.+||++||+.-.+.+.++...+...
T Consensus 8 ekrySeMS~~EL~~EI~~L~ekarKAEq~ 36 (115)
T 2yxy_A 8 QKRYSEMTKEELQQEIAMLTEKARKAEQM 36 (115)
T ss_dssp CCCGGGCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHhhcCHHHHHHHHHHHHHHHHHHHHc
Confidence 58999999999998888887765554433
No 13
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=70.94 E-value=6.8 Score=27.40 Aligned_cols=96 Identities=13% Similarity=0.136 Sum_probs=56.9
Q ss_pred CCccccchhhhhhhHHHHHHHHHHH-HhhHHhCCCcccchhHHHHHHHhhhhhheeee---------eeeeeecCCccHH
Q 028601 94 TPFGYTRKDVLLIGVGVTVIGYGLK-SGLELFGVDPLQAGNVVEVIVVLGLTLGWVST---------YIFRVSNKEMTYA 163 (207)
Q Consensus 94 ~pFgMtR~DVI~IGlgvfllGg~lY-~gLq~~GlD~~~AGiwsQ~lLVlGlvVgWv~S---------YLfRV~tk~MTY~ 163 (207)
.++|++..+...+.... -|..-. -.-..+|++.....-...-+-=-| |+.. +.++.-.+-..+.
T Consensus 31 ~~~~l~~~~~~iL~~l~--~~~~~~~ela~~l~~s~~tvs~~l~~Le~~g----lv~r~~~~~d~r~~~~~lT~~G~~~~ 104 (146)
T 2gxg_A 31 GELNLSYLDFLVLRATS--DGPKTMAYLANRYFVTQSAITASVDKLEEMG----LVVRVRDREDRRKILIEITEKGLETF 104 (146)
T ss_dssp HTTTCCHHHHHHHHHHT--TSCBCHHHHHHHTTCCHHHHHHHHHHHHHTT----SEEEEECSSCTTCEEEEECHHHHHHH
T ss_pred HhcCCCHHHHHHHHHHh--cCCcCHHHHHHHhCCCchhHHHHHHHHHHCC----CEEeecCCCCCceEEEEECHHHHHHH
Confidence 35677666655444332 222111 124477777665555555544444 4432 2233333345566
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 028601 164 QQLRDYEDKVMQKRLEGLTEAELEALIEQVEE 195 (207)
Q Consensus 164 qQ~kdYE~avLQKRleeLtpEEle~L~aEIE~ 195 (207)
++.........++-++.|+++|++.|.+-+++
T Consensus 105 ~~~~~~~~~~~~~~~~~l~~~e~~~l~~~l~~ 136 (146)
T 2gxg_A 105 NKGIEIYKKLANEVTGDLSEDEVILVLDKISK 136 (146)
T ss_dssp HHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 77777778888889999999999888877665
No 14
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=70.06 E-value=7.4 Score=26.98 Aligned_cols=100 Identities=15% Similarity=0.063 Sum_probs=57.6
Q ss_pred CccccchhhhhhhHHHHHHHHH-HHHhhHHhCCCcccchhHHHHHHHhhhhhheee------eeeeeeecCCccHHHHHH
Q 028601 95 PFGYTRKDVLLIGVGVTVIGYG-LKSGLELFGVDPLQAGNVVEVIVVLGLTLGWVS------TYIFRVSNKEMTYAQQLR 167 (207)
Q Consensus 95 pFgMtR~DVI~IGlgvfllGg~-lY~gLq~~GlD~~~AGiwsQ~lLVlGlvVgWv~------SYLfRV~tk~MTY~qQ~k 167 (207)
++|++..+..++....- -|.. .--.-..+|++.....-..+-+-=-|+ |-... .+.++.-.+--.+.++..
T Consensus 31 ~~~lt~~~~~iL~~l~~-~~~~t~~ela~~l~~s~~~vs~~l~~Le~~gl-v~r~~~~~d~R~~~~~lT~~G~~~~~~~~ 108 (142)
T 2fbi_A 31 QHGLTEQQWRVIRILRQ-QGEMESYQLANQACILRPSMTGVLARLERDGI-VRRWKAPKDQRRVYVNLTEKGQQCFVSMS 108 (142)
T ss_dssp HHTCCHHHHHHHHHHHH-HCSEEHHHHHHHTTCCHHHHHHHHHHHHHTTS-EEEEEETTEEEEEEEEECHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHH-cCCCCHHHHHHHHCCCHhHHHHHHHHHHHCCC-EEeecCCCCCCeeEEEECHHHHHHHHHHH
Confidence 56777666554443321 1211 112244778776666555555555544 22111 122333333345666666
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 028601 168 DYEDKVMQKRLEGLTEAELEALIEQVEEE 196 (207)
Q Consensus 168 dYE~avLQKRleeLtpEEle~L~aEIE~E 196 (207)
+..++..++-++.+++||++.|.+-+++-
T Consensus 109 ~~~~~~~~~~~~~l~~~e~~~l~~~l~~l 137 (142)
T 2fbi_A 109 GDMEKNYQRIQERFGEEKLAQLLELLNEL 137 (142)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHH
Confidence 77788888889999999999988877653
No 15
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=69.86 E-value=13 Score=25.95 Aligned_cols=99 Identities=8% Similarity=0.047 Sum_probs=62.8
Q ss_pred CCccccchhhhhhhHHHHHHHHHHH-HhhHHhCCCcccchhHHHHHHHhhhhhheee------eeeeeeecCCccHHHHH
Q 028601 94 TPFGYTRKDVLLIGVGVTVIGYGLK-SGLELFGVDPLQAGNVVEVIVVLGLTLGWVS------TYIFRVSNKEMTYAQQL 166 (207)
Q Consensus 94 ~pFgMtR~DVI~IGlgvfllGg~lY-~gLq~~GlD~~~AGiwsQ~lLVlGlvVgWv~------SYLfRV~tk~MTY~qQ~ 166 (207)
.++|++..+...+...- -++.-. -.-..+|++.....-...-+-=-|+ |-..- .+.++.-.+-..+.++.
T Consensus 32 ~~~~lt~~~~~iL~~l~--~~~~t~~eLa~~l~~s~~tvs~~l~~L~~~Gl-v~r~~~~~d~R~~~~~lT~~g~~~~~~~ 108 (146)
T 3tgn_A 32 SEVALTNTQEHILMLLS--EESLTNSELARRLNVSQAAVTKAIKSLVKEGM-LETSKDSKDARVIFYQLTDLARPIAEEH 108 (146)
T ss_dssp CSSCCCHHHHHHHHHHT--TCCCCHHHHHHHHTCCHHHHHHHHHHHHHTTS-EEC----------CCEECGGGHHHHHHH
T ss_pred hccCCCHHHHHHHHHHH--hCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCC-eEeccCCCCCceeEEEECHhHHHHHHHH
Confidence 57888877766554332 121111 1134778777666555555555554 22221 15566666777888888
Q ss_pred H---HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 028601 167 R---DYEDKVMQKRLEGLTEAELEALIEQVEE 195 (207)
Q Consensus 167 k---dYE~avLQKRleeLtpEEle~L~aEIE~ 195 (207)
. .......+.-++.|++||++.|.+-+++
T Consensus 109 ~~~~~~~~~~~~~~~~~l~~~e~~~l~~~l~~ 140 (146)
T 3tgn_A 109 HHHHEHTLLTYEQVATQFTPNEQKVIQRFLTA 140 (146)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 7 7778889999999999999998887765
No 16
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=68.20 E-value=9.2 Score=27.74 Aligned_cols=71 Identities=14% Similarity=0.142 Sum_probs=46.8
Q ss_pred HHhCCCcccchhHHHHHHHhhhhhheeee---------eeeeeecCCccHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 028601 122 ELFGVDPLQAGNVVEVIVVLGLTLGWVST---------YIFRVSNKEMTYAQQLRDYEDKVMQKRLEGLTEAELEALIEQ 192 (207)
Q Consensus 122 q~~GlD~~~AGiwsQ~lLVlGlvVgWv~S---------YLfRV~tk~MTY~qQ~kdYE~avLQKRleeLtpEEle~L~aE 192 (207)
..+|++.....-...-+.=-|+ |-- +.++.--+-..+.++......+.++.-++.+++||++.|.+-
T Consensus 75 ~~l~~~~~~vs~~l~~Le~~Gl----v~r~~~~~DrR~~~~~LT~~G~~~~~~~~~~~~~~~~~~~~~l~~~e~~~l~~~ 150 (161)
T 3e6m_A 75 TLGVMEQSTTSRTVDQLVDEGL----AARSISDADQRKRTVVLTRKGKKKLAEISPLINDFHAELVGNVDPDKLQTCIEV 150 (161)
T ss_dssp HHTTCCHHHHHHHHHHHHHTTS----EEECC---CCCSCEEEECHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHCCC----EEeeCCcccCCeeEeeECHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 3667766655555555544443 321 223333344556777777778888999999999999999887
Q ss_pred HHHH
Q 028601 193 VEEE 196 (207)
Q Consensus 193 IE~E 196 (207)
+++-
T Consensus 151 L~~l 154 (161)
T 3e6m_A 151 LGEI 154 (161)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7763
No 17
>2lw1_A ABC transporter ATP-binding protein UUP; ABC REG subfamily, DNA binding protein; NMR {Escherichia coli}
Probab=68.01 E-value=15 Score=26.22 Aligned_cols=39 Identities=13% Similarity=0.284 Sum_probs=22.2
Q ss_pred ecCCccHHHHHHHHH------------HHHHHHHHhc-----CCHHHHHHHHHHHHH
Q 028601 156 SNKEMTYAQQLRDYE------------DKVMQKRLEG-----LTEAELEALIEQVEE 195 (207)
Q Consensus 156 ~tk~MTY~qQ~kdYE------------~avLQKRlee-----LtpEEle~L~aEIE~ 195 (207)
-.+++||.+||+ ++ -+.|+..+.. =+++++++|++++++
T Consensus 12 ~~~KLSykeqrE-le~le~~Ie~LE~~i~~le~~ladp~~y~~d~~~~~~l~~~l~~ 67 (89)
T 2lw1_A 12 SSSKLSYKLQRE-LEQLPQLLEDLEAKLEALQTQVADASFFSQPHEQTQKVLADMAA 67 (89)
T ss_dssp SSCSCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHSTTGGGSCHHHHHHHHHHHHH
T ss_pred ccccCCHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCcccccCCHHHHHHHHHHHHH
Confidence 357899999874 43 2334444432 245566666665554
No 18
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=67.79 E-value=7.4 Score=27.90 Aligned_cols=70 Identities=10% Similarity=0.197 Sum_probs=44.1
Q ss_pred HHhCCCcccchhHHHHHHHhhhhhheeee---------eeeeeecCCccHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 028601 122 ELFGVDPLQAGNVVEVIVVLGLTLGWVST---------YIFRVSNKEMTYAQQLRDYEDKVMQKRLEGLTEAELEALIEQ 192 (207)
Q Consensus 122 q~~GlD~~~AGiwsQ~lLVlGlvVgWv~S---------YLfRV~tk~MTY~qQ~kdYE~avLQKRleeLtpEEle~L~aE 192 (207)
..+|++.....-..+-+.=- |||-- +.++.-.+-..+.++..+...+..+.-++.++++|++.|.+-
T Consensus 71 ~~l~is~~tvs~~l~~Le~~----glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~~~~~~~~~~~~~~l~~~e~~~l~~~ 146 (162)
T 2fa5_A 71 DRTAMDKVAVSRAVARLLER----GFIRRETHGDDRRRSMLALSPAGRQVYETVAPLVNEMEQRLMSVFSAEEQQTLERL 146 (162)
T ss_dssp HHHTCCHHHHHHHHHHHHHT----TSEEC---------CCCEECHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHC----CCEeeecCCCCCCeeEEEECHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 46666655544444444444 44432 223333334456677777778888889999999999888776
Q ss_pred HHH
Q 028601 193 VEE 195 (207)
Q Consensus 193 IE~ 195 (207)
++.
T Consensus 147 l~~ 149 (162)
T 2fa5_A 147 IDR 149 (162)
T ss_dssp HHH
T ss_pred HHH
Confidence 655
No 19
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=67.45 E-value=7.3 Score=27.69 Aligned_cols=74 Identities=15% Similarity=0.149 Sum_probs=44.6
Q ss_pred hHHhCCCcccchhHHHHHHHhhhhhheee------eeeeeeecCCccHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 028601 121 LELFGVDPLQAGNVVEVIVVLGLTLGWVS------TYIFRVSNKEMTYAQQLRDYEDKVMQKRLEGLTEAELEALIEQVE 194 (207)
Q Consensus 121 Lq~~GlD~~~AGiwsQ~lLVlGlvVgWv~------SYLfRV~tk~MTY~qQ~kdYE~avLQKRleeLtpEEle~L~aEIE 194 (207)
-..+|++.....-.+.-+-=-|+ |-..- .+..+.--+--.+.++.....++..++-++.|+|||++.+.+-++
T Consensus 64 a~~l~~~~~~vs~~l~~L~~~Gl-v~r~~~~~DrR~~~~~LT~~G~~~~~~~~~~~~~~~~~~~~~l~~~e~~~l~~~L~ 142 (148)
T 3jw4_A 64 AQFFGRRGASITSMLQGLEKKGY-IERRIPENNARQKNIYVLPKGAALVEEFNNIFLEVEESITKGLTKDEQKQLMSILI 142 (148)
T ss_dssp HHC------CHHHHHHHHHHTTS-BCCC--------CCCCBCHHHHHHHHHHHHHHHHHHHHTTTTCCHHHHHHHHHHHH
T ss_pred HHHHCCChhHHHHHHHHHHHCCC-EEeeCCCCCchhheeeECHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 34678887777766666666654 22221 122333333445677777777888888899999999999988776
Q ss_pred H
Q 028601 195 E 195 (207)
Q Consensus 195 ~ 195 (207)
+
T Consensus 143 ~ 143 (148)
T 3jw4_A 143 K 143 (148)
T ss_dssp H
T ss_pred H
Confidence 5
No 20
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=67.31 E-value=13 Score=27.48 Aligned_cols=97 Identities=10% Similarity=0.143 Sum_probs=63.0
Q ss_pred CCccccchhhhhhhHHHHHHHHHH--HHhhHHhCCCcccchhHHHHHHHhhhhhheee---------eeeeeeecCCccH
Q 028601 94 TPFGYTRKDVLLIGVGVTVIGYGL--KSGLELFGVDPLQAGNVVEVIVVLGLTLGWVS---------TYIFRVSNKEMTY 162 (207)
Q Consensus 94 ~pFgMtR~DVI~IGlgvfllGg~l--Y~gLq~~GlD~~~AGiwsQ~lLVlGlvVgWv~---------SYLfRV~tk~MTY 162 (207)
.|||.|......+.... -.|.+. --.-..+|+|.....-.+.-+-=-|+ |- .++.+.--+-...
T Consensus 25 ~~~gLt~~q~~vL~~L~-~~~~~~~~~eLa~~l~~~~~tvs~~v~~Le~~Gl----V~R~~~~~DrR~~~l~LT~~G~~~ 99 (151)
T 4aik_A 25 KPLELTQTHWVTLYNIN-RLPPEQSQIQLAKAIGIEQPSLVRTLDQLEEKGL----ITRHTSANDRRAKRIKLTEQSSPI 99 (151)
T ss_dssp GGGCCCHHHHHHHHHHH-HSCTTSCHHHHHHHHTSCHHHHHHHHHHHHHTTS----EEEEECSSCTTCEEEEECGGGHHH
T ss_pred HHcCCCHHHHHHHHHHH-HcCCCCcHHHHHHHHCcCHHHHHHHHHHHHhCCC----eEeecCCCCCcchhhhcCHHHHHH
Confidence 57888877654432221 112221 12345788888777766666655554 43 2344455555667
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 028601 163 AQQLRDYEDKVMQKRLEGLTEAELEALIEQVEE 195 (207)
Q Consensus 163 ~qQ~kdYE~avLQKRleeLtpEEle~L~aEIE~ 195 (207)
.++.....++..++-++.|||||++.|..=+++
T Consensus 100 ~~~~~~~~~~~~~~~~~~l~~ee~~~l~~~L~k 132 (151)
T 4aik_A 100 IEQVDGVISSTRKEILGGISSDEIAVLSGLIDK 132 (151)
T ss_dssp HHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 888888888999999999999999887665554
No 21
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=67.12 E-value=16 Score=25.08 Aligned_cols=97 Identities=14% Similarity=0.121 Sum_probs=57.9
Q ss_pred CCccccchhhhhhhHHHHHHHHH-HHHhhHHhCCCcccchhHHHHHHHhhhhhheeee---------eeeeeecCCccHH
Q 028601 94 TPFGYTRKDVLLIGVGVTVIGYG-LKSGLELFGVDPLQAGNVVEVIVVLGLTLGWVST---------YIFRVSNKEMTYA 163 (207)
Q Consensus 94 ~pFgMtR~DVI~IGlgvfllGg~-lY~gLq~~GlD~~~AGiwsQ~lLVlGlvVgWv~S---------YLfRV~tk~MTY~ 163 (207)
.++|++..+...+-...- -|.. .--.-..+|++.....-...-+.=-|+ +.. +.++.--+--.+.
T Consensus 27 ~~~~l~~~~~~iL~~l~~-~~~~~~~ela~~l~~~~~tvs~~l~~L~~~gl----i~r~~~~~d~r~~~~~lT~~G~~~~ 101 (139)
T 3bja_A 27 EQYDISYVQFGVIQVLAK-SGKVSMSKLIENMGCVPSNMTTMIQRMKRDGY----VMTEKNPNDQRETLVYLTKKGEETK 101 (139)
T ss_dssp GGGTCCHHHHHHHHHHHH-SCSEEHHHHHHHCSSCCTTHHHHHHHHHHTTS----EEEEECSSCTTCEEEEECHHHHHHH
T ss_pred hhcCCCHHHHHHHHHHHH-cCCcCHHHHHHHHCCChhHHHHHHHHHHHCCC----eeeccCCCCCceeEEEECHHHHHHH
Confidence 357777766554433321 1211 112245788887777766666666554 322 1222323334455
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 028601 164 QQLRDYEDKVMQKRLEGLTEAELEALIEQVEE 195 (207)
Q Consensus 164 qQ~kdYE~avLQKRleeLtpEEle~L~aEIE~ 195 (207)
++......+.++.-++.+++||++.+.+-+++
T Consensus 102 ~~~~~~~~~~~~~~~~~l~~~e~~~l~~~l~~ 133 (139)
T 3bja_A 102 KQVDVQYSDFLKENCGCFTKEEEGILEDLLLK 133 (139)
T ss_dssp HHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 56666667788888999999999998877765
No 22
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=66.74 E-value=19 Score=26.63 Aligned_cols=74 Identities=15% Similarity=0.274 Sum_probs=51.3
Q ss_pred hHHhCCCcccchhHHHHHHHhhhhhheee------eeeeeeecCCccHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 028601 121 LELFGVDPLQAGNVVEVIVVLGLTLGWVS------TYIFRVSNKEMTYAQQLRDYEDKVMQKRLEGLTEAELEALIEQVE 194 (207)
Q Consensus 121 Lq~~GlD~~~AGiwsQ~lLVlGlvVgWv~------SYLfRV~tk~MTY~qQ~kdYE~avLQKRleeLtpEEle~L~aEIE 194 (207)
-+.+|++.......+.-+-=-|+ |-..- .+..+.--+-..+.++.....++.+++-++.|++||++.|.+-++
T Consensus 75 a~~l~i~~~tvs~~l~~Le~~Gl-V~r~~~~~DrR~~~l~LT~~G~~~~~~~~~~~~~~~~~~~~~l~~~e~~~l~~~L~ 153 (166)
T 3deu_A 75 AKAIGIEQPSLVRTLDQLEDKGL-ISRQTCASDRRAKRIKLTEKAEPLIAEMEEVIHKTRGEILAGISSEEIELLIKLIA 153 (166)
T ss_dssp HHHHTSCHHHHHHHHHHHHHTTS-EEEC--------CEEEECGGGHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHCCCHhhHHHHHHHHHHCCC-EEeeCCCCCCCeeEEEECHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 34677776665555555555554 22221 144555566677888888888999999999999999999888777
Q ss_pred H
Q 028601 195 E 195 (207)
Q Consensus 195 ~ 195 (207)
+
T Consensus 154 ~ 154 (166)
T 3deu_A 154 K 154 (166)
T ss_dssp H
T ss_pred H
Confidence 6
No 23
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=66.47 E-value=12 Score=26.46 Aligned_cols=96 Identities=11% Similarity=0.025 Sum_probs=56.3
Q ss_pred CccccchhhhhhhHHHHHHHHH-HHHhhHHhCCCcccchhHHHHHHHhhhhhheeeee---------eeeeecCCccHHH
Q 028601 95 PFGYTRKDVLLIGVGVTVIGYG-LKSGLELFGVDPLQAGNVVEVIVVLGLTLGWVSTY---------IFRVSNKEMTYAQ 164 (207)
Q Consensus 95 pFgMtR~DVI~IGlgvfllGg~-lY~gLq~~GlD~~~AGiwsQ~lLVlGlvVgWv~SY---------LfRV~tk~MTY~q 164 (207)
++|++..+..++....- -|.. .--+-..+|++.....-...-+-=-|+ |--. .++.--+-..+.+
T Consensus 35 ~~~lt~~~~~iL~~l~~-~~~~t~~ela~~l~~~~~~vs~~l~~Le~~Gl----v~r~~~~~d~R~~~~~lT~~G~~~~~ 109 (152)
T 3bj6_A 35 REGVTVGQRAILEGLSL-TPGATAPQLGAALQMKRQYISRILQEVQRAGL----IERRTNPEHARSHRYWLTPRGEAIIT 109 (152)
T ss_dssp HTTCCHHHHHHHHHHHH-STTEEHHHHHHHHTCCHHHHHHHHHHHHHTTS----EEEECCSSSTTSCEEEECHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHh-CCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCC----eeecCCcccccceeeEEChhhHHHHH
Confidence 46666655544433221 1211 112244778877666665555555544 4321 2333333445666
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 028601 165 QLRDYEDKVMQKRLEGLTEAELEALIEQVEE 195 (207)
Q Consensus 165 Q~kdYE~avLQKRleeLtpEEle~L~aEIE~ 195 (207)
+......+.++.-++.++++|++.|.+-++.
T Consensus 110 ~~~~~~~~~~~~~~~~l~~~e~~~l~~~l~~ 140 (152)
T 3bj6_A 110 AIRADEMAKLALFSEGFSSVELTAYHKVQLA 140 (152)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 6677778888889999999999988876665
No 24
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=65.60 E-value=19 Score=25.29 Aligned_cols=97 Identities=11% Similarity=0.095 Sum_probs=55.7
Q ss_pred CccccchhhhhhhHHHHHHHHH-HHHhhHHhCCCcccchhHHHHHHHhhhhhheeee---------eeeeeecCCccHHH
Q 028601 95 PFGYTRKDVLLIGVGVTVIGYG-LKSGLELFGVDPLQAGNVVEVIVVLGLTLGWVST---------YIFRVSNKEMTYAQ 164 (207)
Q Consensus 95 pFgMtR~DVI~IGlgvfllGg~-lY~gLq~~GlD~~~AGiwsQ~lLVlGlvVgWv~S---------YLfRV~tk~MTY~q 164 (207)
++|++..+..++-...- -|.. .--.-..+|++.....-...-+.=-|+ |-. +.++.-.+-..+.+
T Consensus 37 ~~~l~~~~~~iL~~l~~-~~~~t~~ela~~l~~~~~tvs~~l~~Le~~Gl----v~r~~~~~d~R~~~~~lT~~G~~~~~ 111 (150)
T 2rdp_A 37 NYPITPPQFVALQWLLE-EGDLTVGELSNKMYLACSTTTDLVDRMERNGL----VARVRDEHDRRVVRIRLLEKGERIIE 111 (150)
T ss_dssp TSSSCHHHHHHHHHHHH-HCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTS----EEEEECCC---CEEEEECHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHH-cCCCCHHHHHHHHCCCchhHHHHHHHHHHCCC----eeecCCCCCcceeEeEECHhHHHHHH
Confidence 56777666544433221 1211 122234677776665555555554444 432 12233333344556
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 028601 165 QLRDYEDKVMQKRLEGLTEAELEALIEQVEEE 196 (207)
Q Consensus 165 Q~kdYE~avLQKRleeLtpEEle~L~aEIE~E 196 (207)
+..+...+..+.-++.|++||++.|.+-+++-
T Consensus 112 ~~~~~~~~~~~~~~~~l~~~e~~~l~~~l~~l 143 (150)
T 2rdp_A 112 EVIEKRQRDLANVLESFSDEEIVVFERCLRKL 143 (150)
T ss_dssp HHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 66666677888889999999999988877653
No 25
>3s5m_A Falcilysin; M16 metalloprotease, peptidase, hydrolase; 1.55A {Plasmodium falciparum} PDB: 3s5i_A 3s5k_A 3s5h_A
Probab=65.40 E-value=8.6 Score=38.87 Aligned_cols=40 Identities=33% Similarity=0.526 Sum_probs=35.1
Q ss_pred ecCCccHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 028601 156 SNKEMTYAQQLRDYEDKVMQKRLEGLTEAELEALIEQVEE 195 (207)
Q Consensus 156 ~tk~MTY~qQ~kdYE~avLQKRleeLtpEEle~L~aEIE~ 195 (207)
+.-+-+|.++++.-|.+.|+++.++||+||++++.++-++
T Consensus 584 ~~P~~~~~~~~~~~e~~~L~~~~~~ls~~~~~~i~~~~~~ 623 (1193)
T 3s5m_A 584 LEGDENYAQEQENLEKQELKKRIENFNEQEKEQVIKNFEE 623 (1193)
T ss_dssp EEEESSHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred EEcCCCHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Confidence 3445689999999999999999999999999999998653
No 26
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=63.32 E-value=12 Score=25.98 Aligned_cols=97 Identities=13% Similarity=0.164 Sum_probs=57.4
Q ss_pred CCccccchhhhhhhHHHHHHHHHH-HHhhHHhCCCcccchhHHHHHHHhhhhhheeeee---------eeeeecCCccHH
Q 028601 94 TPFGYTRKDVLLIGVGVTVIGYGL-KSGLELFGVDPLQAGNVVEVIVVLGLTLGWVSTY---------IFRVSNKEMTYA 163 (207)
Q Consensus 94 ~pFgMtR~DVI~IGlgvfllGg~l-Y~gLq~~GlD~~~AGiwsQ~lLVlGlvVgWv~SY---------LfRV~tk~MTY~ 163 (207)
.++|++..+...+....- -|..- --.-..+|++.....-...-+-=-|+ |--. .++.--+-..+.
T Consensus 27 ~~~~l~~~~~~iL~~l~~-~~~~~~~~la~~l~~s~~tvs~~l~~L~~~gl----v~r~~~~~d~r~~~~~lT~~G~~~~ 101 (145)
T 2a61_A 27 RDFGITPAQFDILQKIYF-EGPKRPGELSVLLGVAKSTVTGLVKRLEADGY----LTRTPDPADRRAYFLVITRKGEEVI 101 (145)
T ss_dssp HHHTCCHHHHHHHHHHHH-HCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTS----EEEEEETTEEEEEEEEECHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHH-cCCCCHHHHHHHHCCCchhHHHHHHHHHHCCC----eeecCCCCCCceEEEEECHHHHHHH
Confidence 356777666544433321 12111 12244778877666666555555544 4322 233333334556
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 028601 164 QQLRDYEDKVMQKRLEGLTEAELEALIEQVEE 195 (207)
Q Consensus 164 qQ~kdYE~avLQKRleeLtpEEle~L~aEIE~ 195 (207)
++..+...+.+++-++.|++||++.+.+-+++
T Consensus 102 ~~~~~~~~~~~~~~~~~l~~~e~~~l~~~l~~ 133 (145)
T 2a61_A 102 EKVIERRENFIEKITSDLGKEKSSKILDYLKE 133 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 66666667788888999999999988877765
No 27
>2xrh_A Protein HP0721; unknown function; 1.50A {Helicobacter pylori}
Probab=63.21 E-value=11 Score=29.12 Aligned_cols=40 Identities=20% Similarity=0.308 Sum_probs=29.7
Q ss_pred CCccHHHHHHHHH---HHHHHHHHhcCCHHHHHHHHHHHHHHHh
Q 028601 158 KEMTYAQQLRDYE---DKVMQKRLEGLTEAELEALIEQVEEEKR 198 (207)
Q Consensus 158 k~MTY~qQ~kdYE---~avLQKRleeLtpEEle~L~aEIE~Ek~ 198 (207)
+.|+.- ++++|. .+.++|-++.||.+|-.+.+.+|-++-+
T Consensus 43 ~~M~~k-~~k~F~~~~~~~~~kN~~kMS~ke~~~~r~aI~eal~ 85 (100)
T 2xrh_A 43 EKMPED-KRKAFHKQLHEYATKNTDKMTVADFEARQKAVKEALK 85 (100)
T ss_dssp HHSCHH-HHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred HhCCHH-HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 356654 344554 5678899999999999999999987543
No 28
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=63.20 E-value=16 Score=25.24 Aligned_cols=97 Identities=13% Similarity=0.081 Sum_probs=56.8
Q ss_pred CCccccchhhhhhhHHHHHHHHHH-HHhhHHhCCCcccchhHHHHHHHhhhhhheeee---------eeeeeecCCccHH
Q 028601 94 TPFGYTRKDVLLIGVGVTVIGYGL-KSGLELFGVDPLQAGNVVEVIVVLGLTLGWVST---------YIFRVSNKEMTYA 163 (207)
Q Consensus 94 ~pFgMtR~DVI~IGlgvfllGg~l-Y~gLq~~GlD~~~AGiwsQ~lLVlGlvVgWv~S---------YLfRV~tk~MTY~ 163 (207)
.++|++..+...+....-- |..- --.-..+|++.....-...-+-=-|+ +-. +.++.-.+-..+.
T Consensus 23 ~~~~l~~~~~~iL~~l~~~-~~~~~~ela~~l~~s~~tvs~~l~~L~~~gl----v~~~~~~~d~R~~~~~lT~~G~~~~ 97 (138)
T 3bpv_A 23 GHLNLTDAQVACLLRIHRE-PGIKQDELATFFHVDKGTIARTLRRLEESGF----IEREQDPENRRRYILEVTRRGEEII 97 (138)
T ss_dssp GGGTCCHHHHHHHHHHHHS-TTCBHHHHHHHHTCCHHHHHHHHHHHHHTTS----EEEEEETTEEEEEEEEECHHHHHTH
T ss_pred HhcCCCHHHHHHHHHHHHc-CCCCHHHHHHHHCCCHHHHHHHHHHHHHCCC----EEeecCCCCceeEEeeECHhHHHHH
Confidence 3677777666544433211 2111 12244778776665555555555544 432 1222222334556
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 028601 164 QQLRDYEDKVMQKRLEGLTEAELEALIEQVEE 195 (207)
Q Consensus 164 qQ~kdYE~avLQKRleeLtpEEle~L~aEIE~ 195 (207)
++.....++.+++-++.|++||++.+.+-+++
T Consensus 98 ~~~~~~~~~~~~~~~~~l~~~e~~~l~~~l~~ 129 (138)
T 3bpv_A 98 PLILKVEERWEDLLFRDFTEDERKLFRKMCRR 129 (138)
T ss_dssp HHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 66666667788888899999999988877765
No 29
>2q97_T Toxofilin, actin, alpha skeletal muscle; structural protein, structural protein-cell invasion complex; HET: HIC ATP; 2.50A {Toxoplasma gondii}
Probab=63.15 E-value=8.5 Score=30.79 Aligned_cols=34 Identities=32% Similarity=0.477 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Q 028601 163 AQQLRDYEDKVMQKRLEGLTEAELEALIEQVEEEKR 198 (207)
Q Consensus 163 ~qQ~kdYE~avLQKRleeLtpEEle~L~aEIE~Ek~ 198 (207)
..|-++||+ .|+-+.+||||....|.+.-..|+.
T Consensus 65 tdQQ~aYEq--vq~dl~~mSPEtKa~LIen~~kEk~ 98 (129)
T 2q97_T 65 TEQQKAYEQ--VQRDLSQLSPETKALLIENQRKEKT 98 (129)
T ss_dssp HHHHHHHHH--HHHHHTTSCTTHHHHHHHHHHHHHH
T ss_pred hHHHHHHHH--HHHHHHHcCHHHHHHHHHHHHHHHH
Confidence 468899986 5889999999999999877666654
No 30
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=63.01 E-value=12 Score=26.28 Aligned_cols=97 Identities=10% Similarity=0.104 Sum_probs=55.4
Q ss_pred CCccccchhhhhhhHHHHHHHHH-HHHhhHHhCCCcccchhHHHHHHHhhhhhheeee---------eeeeeecCCccHH
Q 028601 94 TPFGYTRKDVLLIGVGVTVIGYG-LKSGLELFGVDPLQAGNVVEVIVVLGLTLGWVST---------YIFRVSNKEMTYA 163 (207)
Q Consensus 94 ~pFgMtR~DVI~IGlgvfllGg~-lY~gLq~~GlD~~~AGiwsQ~lLVlGlvVgWv~S---------YLfRV~tk~MTY~ 163 (207)
.++|++..+..++.... --|.. .--.-..+|++.....-...-+-=-| ||-- +.++.-.+--.+.
T Consensus 25 ~~~~lt~~q~~iL~~l~-~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~G----lv~r~~~~~D~R~~~~~LT~~G~~~~ 99 (145)
T 3g3z_A 25 GQQDLNYNLFAVLYTLA-TEGSRTQKHIGEKWSLPKQTVSGVCKTLAGQG----LIEWQEGEQDRRKRLLSLTETGKAYA 99 (145)
T ss_dssp HTTTCCHHHHHHHHHHH-HHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTT----SEEECCCSSCGGGSCEEECHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHH-HCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCC----CEeeccCCCCCceeeeeEChhHHHHH
Confidence 36777776654444332 12221 11223477877666555555554444 4431 1222233334455
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 028601 164 QQLRDYEDKVMQKRLEGLTEAELEALIEQVEE 195 (207)
Q Consensus 164 qQ~kdYE~avLQKRleeLtpEEle~L~aEIE~ 195 (207)
++...-..+.++.-++.|+|+|++.|.+-+++
T Consensus 100 ~~~~~~~~~~~~~~~~~l~~~e~~~l~~~l~~ 131 (145)
T 3g3z_A 100 APLTESAQEFSDKVFATFGDKRTTRLFADLDA 131 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence 56666667788888999999999988776665
No 31
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=62.83 E-value=18 Score=25.07 Aligned_cols=71 Identities=13% Similarity=0.165 Sum_probs=46.5
Q ss_pred hHHhCCCcccchhHHHHHHHhhhhhheeeee---------eeeeecCCccHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 028601 121 LELFGVDPLQAGNVVEVIVVLGLTLGWVSTY---------IFRVSNKEMTYAQQLRDYEDKVMQKRLEGLTEAELEALIE 191 (207)
Q Consensus 121 Lq~~GlD~~~AGiwsQ~lLVlGlvVgWv~SY---------LfRV~tk~MTY~qQ~kdYE~avLQKRleeLtpEEle~L~a 191 (207)
-..+|++.....-...-+-=-| |+-.. ....-.+-..+.++..+..++..+.-++.++++|++.|.+
T Consensus 57 a~~l~~~~~tvs~~l~~Le~~G----li~r~~~~~d~R~~~i~lT~~G~~~~~~~~~~~~~~~~~~~~~l~~~e~~~l~~ 132 (141)
T 3bro_A 57 ESEFSIKSSTATVLLQRMEIKK----LLYRKVSGKDSRQKCLKLTKKANKLETIILSYMDSDQSQMTSGLNKEEVVFLEK 132 (141)
T ss_dssp HHHHTCCHHHHHHHHHHHHHTT----SEEEEECSSCTTSEEEEECHHHHTTHHHHHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHCCCcchHHHHHHHHHHCC----CEEeeCCCcCCCeeeeEECHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 4467777665555555554444 44321 2233333445667777777888888899999999998887
Q ss_pred HHHH
Q 028601 192 QVEE 195 (207)
Q Consensus 192 EIE~ 195 (207)
-+++
T Consensus 133 ~l~~ 136 (141)
T 3bro_A 133 ILKR 136 (141)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7765
No 32
>3h90_A Ferrous-iron efflux pump FIEF; membrane protein, zinc transporter, cell inner membrane, cell membrane, ION transport, iron transport; 2.90A {Escherichia coli k-12} PDB: 2qfi_A
Probab=61.03 E-value=5.5 Score=32.70 Aligned_cols=23 Identities=13% Similarity=0.190 Sum_probs=15.4
Q ss_pred CCCCccccchhhhh---hhHHHHHHH
Q 028601 92 TETPFGYTRKDVLL---IGVGVTVIG 114 (207)
Q Consensus 92 ~~~pFgMtR~DVI~---IGlgvfllG 114 (207)
++-|||+.|...+. .|+.++++|
T Consensus 62 ~~~pyG~~r~E~l~~l~~~~~l~~~~ 87 (283)
T 3h90_A 62 DNHSFGHGKAESLAALAQSMFISGSA 87 (283)
T ss_dssp SSCSSCSTTHHHHHHHHHHHHHHHHH
T ss_pred CCCCCcchHHHHHHHHHHHHHHHHHH
Confidence 56899999988654 444444444
No 33
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=60.45 E-value=19 Score=25.38 Aligned_cols=96 Identities=13% Similarity=0.083 Sum_probs=55.3
Q ss_pred CccccchhhhhhhHHHHHHHHH-HHHhhHHhCCCcccchhHHHHHHHhhhhhheeeee---------eeeeecCCccHHH
Q 028601 95 PFGYTRKDVLLIGVGVTVIGYG-LKSGLELFGVDPLQAGNVVEVIVVLGLTLGWVSTY---------IFRVSNKEMTYAQ 164 (207)
Q Consensus 95 pFgMtR~DVI~IGlgvfllGg~-lY~gLq~~GlD~~~AGiwsQ~lLVlGlvVgWv~SY---------LfRV~tk~MTY~q 164 (207)
++|++..+..++....- -|.. .--.-..+|++.....-...-+-=-| ||-.. .++.-.+--.+..
T Consensus 32 ~~~l~~~~~~iL~~l~~-~~~~t~~ela~~l~~s~~tvs~~l~~Le~~g----lv~r~~~~~d~R~~~~~lT~~G~~~~~ 106 (155)
T 1s3j_A 32 KQGVTPAQLFVLASLKK-HGSLKVSEIAERMEVKPSAVTLMADRLEQKN----LIARTHNTKDRRVIDLSLTDEGDIKFE 106 (155)
T ss_dssp HTTCCHHHHHHHHHHHH-HSEEEHHHHHHHHTSCHHHHHHHHHHHHHTT----SEEEEECSSCTTSEEEEECHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHH-cCCCCHHHHHHHHCCCHHHHHHHHHHHHHCC----CEeecCCCCCCceEEEEECHHHHHHHH
Confidence 35666666544333221 1211 12224477887666655555555554 44321 2333333345566
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 028601 165 QLRDYEDKVMQKRLEGLTEAELEALIEQVEE 195 (207)
Q Consensus 165 Q~kdYE~avLQKRleeLtpEEle~L~aEIE~ 195 (207)
+........+++-++.|+++|++.|.+-++.
T Consensus 107 ~~~~~~~~~~~~~~~~l~~~e~~~l~~~l~~ 137 (155)
T 1s3j_A 107 EVLAGRKAIMARYLSFLTEEEMLQAAHITAK 137 (155)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6666667788888999999999988877665
No 34
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=59.20 E-value=6.4 Score=30.23 Aligned_cols=81 Identities=17% Similarity=0.147 Sum_probs=49.1
Q ss_pred ccccchhhhhhhHHHHHHHHHHHHhhHHhCCCcccchhHHHHHHHhhhhhheeeeeeeeeecCCc-cHHHHHHH-HHHHH
Q 028601 96 FGYTRKDVLLIGVGVTVIGYGLKSGLELFGVDPLQAGNVVEVIVVLGLTLGWVSTYIFRVSNKEM-TYAQQLRD-YEDKV 173 (207)
Q Consensus 96 FgMtR~DVI~IGlgvfllGg~lY~gLq~~GlD~~~AGiwsQ~lLVlGlvVgWv~SYLfRV~tk~M-TY~qQ~kd-YE~av 173 (207)
.|=+..|...+=..|.-.||. +.+ .....|.++.--+|+ .... +=..++|+ |+.-.
T Consensus 37 i~gk~lDL~~Ly~~V~~~GG~-----~~V----t~~k~W~~Va~~lg~-------------p~~~~sa~~~Lr~~Y~k~L 94 (121)
T 2rq5_A 37 IGGCELDLACFFRLINEMGGM-----QQV----TDLKKWNKLADMLRI-------------PKTAQDRLAKLQEAYCQYL 94 (121)
T ss_dssp ETTEECCHHHHHHHHHHTTSH-----HHH----HHTTCHHHHHHHTCC-------------CTTCSSHHHHHHHHHHTTH
T ss_pred CCCEeccHHHHHHHHHHcCcH-----HHh----cccCcHHHHHHHhCC-------------CCCcCcHHHHHHHHHHHHh
Confidence 455666766666666666622 221 122468887777765 1122 23345555 44322
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHhcc
Q 028601 174 MQKRLEGLTEAELEALIEQVEEEKRRL 200 (207)
Q Consensus 174 LQKRleeLtpEEle~L~aEIE~Ek~~~ 200 (207)
+ -+|.++|||.++|+.|++.|++..
T Consensus 95 ~--~YE~~~~~e~~~l~~~v~~~~~~~ 119 (121)
T 2rq5_A 95 L--SYDSLSPEEHRRLEKEVLMEKEIL 119 (121)
T ss_dssp H--HHHHCCHHHHHHHHHHHHHHHHTT
T ss_pred H--HHHCcCHHHHhhHHHHHHHHHHHh
Confidence 2 356799999999999999998764
No 35
>3j1z_P YIIP, cation efflux family protein; zinc transporter, secondary transporter, alternating access mechanism, metal transport; 13.00A {Shewanella oneidensis}
Probab=56.92 E-value=6.7 Score=32.98 Aligned_cols=31 Identities=16% Similarity=0.133 Sum_probs=17.8
Q ss_pred CCCCccccchhhhh---hhHHHHHHHH-HHHHhhH
Q 028601 92 TETPFGYTRKDVLL---IGVGVTVIGY-GLKSGLE 122 (207)
Q Consensus 92 ~~~pFgMtR~DVI~---IGlgvfllGg-~lY~gLq 122 (207)
++-|||+.|...+. .|+.++++|+ ++|.+.+
T Consensus 71 ~~~pyG~~R~E~l~al~~~~~l~~~~~~i~~eai~ 105 (306)
T 3j1z_P 71 HDHRYGHGKAEPLAALAQSAFIMGSAFLLLFYGGE 105 (306)
T ss_dssp CTTSSCCTTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCchhhHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 45899999987654 3444444332 3344444
No 36
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=55.88 E-value=21 Score=25.96 Aligned_cols=74 Identities=14% Similarity=0.159 Sum_probs=46.6
Q ss_pred hHHhCCCcccchhHHHHHHHhhhhhheeee------eeeeeecCCccHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 028601 121 LELFGVDPLQAGNVVEVIVVLGLTLGWVST------YIFRVSNKEMTYAQQLRDYEDKVMQKRLEGLTEAELEALIEQVE 194 (207)
Q Consensus 121 Lq~~GlD~~~AGiwsQ~lLVlGlvVgWv~S------YLfRV~tk~MTY~qQ~kdYE~avLQKRleeLtpEEle~L~aEIE 194 (207)
-..+|++.....-.+.-+-=-|+ |-..-. +....-.+-..+.++....-.+.++.-++.|++||++.|.+-++
T Consensus 69 a~~l~~~~~tvs~~l~~Le~~Gl-v~r~~~~~DrR~~~l~LT~~G~~~~~~~~~~~~~~~~~~~~~l~~~e~~~l~~~L~ 147 (168)
T 3u2r_A 69 ADRLISRAPDITRLIDRLDDRGL-VLRTRKPENRRVVEVALTDAGLKLLKDLEEPVRQCHERQLGHLAADELHELIRLME 147 (168)
T ss_dssp HHHC---CTHHHHHHHHHHHTTS-EEEEEETTEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCChhhHHHHHHHHHHCCC-EeecCCCCCCCeeEeEECHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 44677777666655555555554 221111 23334444456777777777888899999999999999988877
Q ss_pred H
Q 028601 195 E 195 (207)
Q Consensus 195 ~ 195 (207)
+
T Consensus 148 ~ 148 (168)
T 3u2r_A 148 L 148 (168)
T ss_dssp H
T ss_pred H
Confidence 5
No 37
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=54.45 E-value=27 Score=26.42 Aligned_cols=71 Identities=15% Similarity=0.170 Sum_probs=48.4
Q ss_pred hHHhCCCcccchhHHHHHHHhhhhhheeee---------eeeeeecCCccHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 028601 121 LELFGVDPLQAGNVVEVIVVLGLTLGWVST---------YIFRVSNKEMTYAQQLRDYEDKVMQKRLEGLTEAELEALIE 191 (207)
Q Consensus 121 Lq~~GlD~~~AGiwsQ~lLVlGlvVgWv~S---------YLfRV~tk~MTY~qQ~kdYE~avLQKRleeLtpEEle~L~a 191 (207)
-..+|++...+.-...-+-=-| ||-- +..+.--+-..+.++......+.++.-++.|++||++.|.+
T Consensus 64 a~~l~is~~tvs~~l~~Le~~G----lV~r~~~~~DrR~~~l~LT~~G~~~~~~~~~~~~~~~~~~~~~l~~ee~~~l~~ 139 (189)
T 3nqo_A 64 ARKMGTSKQNINRLVANLEKNG----YVDVIPSPHDKRAINVKVTDLGKKVMVTCSRTGINFMADVFHEFTKDELETLWS 139 (189)
T ss_dssp HHHHTSCHHHHHHHHHHHHHTT----SEEEEECSSCSSCEEEEECHHHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHCC----CEEeccCCCCCCeeEEEECHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 3477877665555555554444 4432 34444444566777777777888899999999999998888
Q ss_pred HHHH
Q 028601 192 QVEE 195 (207)
Q Consensus 192 EIE~ 195 (207)
-++.
T Consensus 140 ~L~~ 143 (189)
T 3nqo_A 140 LLKK 143 (189)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7765
No 38
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=54.17 E-value=29 Score=24.69 Aligned_cols=77 Identities=8% Similarity=0.157 Sum_probs=50.9
Q ss_pred hHHhCCCcccchhHHHHHHHhhhhhheee------eeeeeeecCCccHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 028601 121 LELFGVDPLQAGNVVEVIVVLGLTLGWVS------TYIFRVSNKEMTYAQQLRDYEDKVMQKRLEGLTEAELEALIEQVE 194 (207)
Q Consensus 121 Lq~~GlD~~~AGiwsQ~lLVlGlvVgWv~------SYLfRV~tk~MTY~qQ~kdYE~avLQKRleeLtpEEle~L~aEIE 194 (207)
-..+|++.....-...-+.=-|+ |-... .+..++-.+-..+.++.....++.+++-++.|++||++.|.+-++
T Consensus 69 a~~l~i~~~tvs~~l~~Le~~Gl-i~r~~~~~d~R~~~~~lT~~G~~~~~~~~~~~~~~~~~~~~~l~~~e~~~l~~~l~ 147 (160)
T 3boq_A 69 SGALKVTNGNVSGLVNRLIKDGM-VVKAMSADDRRSFSAKLTDAGLTTFKQASEAHNRILAELLRAVSDQDMVEASAALR 147 (160)
T ss_dssp HHHCSSCCSCHHHHHHHHHHHTS-EEEC--------CEEEECHHHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred HHHHCCChhhHHHHHHHHHHCCC-EEeecCCCCCCeEEEEEChhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 44778888777777777766665 22211 012233333355666667777888888999999999999988877
Q ss_pred HHHh
Q 028601 195 EEKR 198 (207)
Q Consensus 195 ~Ek~ 198 (207)
.-.+
T Consensus 148 ~l~~ 151 (160)
T 3boq_A 148 GILE 151 (160)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6443
No 39
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=54.09 E-value=29 Score=24.56 Aligned_cols=71 Identities=14% Similarity=0.270 Sum_probs=46.7
Q ss_pred hHHhCCCcccchhHHHHHHHhhhhhheeee---------eeeeeecCCccHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 028601 121 LELFGVDPLQAGNVVEVIVVLGLTLGWVST---------YIFRVSNKEMTYAQQLRDYEDKVMQKRLEGLTEAELEALIE 191 (207)
Q Consensus 121 Lq~~GlD~~~AGiwsQ~lLVlGlvVgWv~S---------YLfRV~tk~MTY~qQ~kdYE~avLQKRleeLtpEEle~L~a 191 (207)
-..+|++...+.-...-+-=-| ||-- +..+.--+-..+.++......+..+.-++.|++||++.|.+
T Consensus 61 a~~l~i~~~tvs~~l~~Le~~G----lv~r~~~~~D~R~~~~~LT~~G~~~~~~~~~~~~~~~~~~~~~l~~~e~~~l~~ 136 (150)
T 3fm5_A 61 AATMGLDPSQIVGLVDELEERG----LVVRTLDPSDRRNKLIAATEEGRRLRDDAKARVDAAHGRYFEGIPDTVVNQMRD 136 (150)
T ss_dssp HHHHTCCHHHHHHHHHHHHTTT----SEEC-----------CEECHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHCCCHhHHHHHHHHHHHCC----CEEeeCCccccchheeeECHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 4467777665555555554444 3321 12233334455677777777888899999999999999988
Q ss_pred HHHH
Q 028601 192 QVEE 195 (207)
Q Consensus 192 EIE~ 195 (207)
-+++
T Consensus 137 ~L~~ 140 (150)
T 3fm5_A 137 TLQS 140 (150)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8876
No 40
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=50.26 E-value=37 Score=23.76 Aligned_cols=98 Identities=10% Similarity=0.032 Sum_probs=53.6
Q ss_pred ccccchhhhhhhHHHHHHHHHH-HHhhHHhCCCcccchhHHHHHHHhhhhhheee------eeeeeeecCCccHHHHHHH
Q 028601 96 FGYTRKDVLLIGVGVTVIGYGL-KSGLELFGVDPLQAGNVVEVIVVLGLTLGWVS------TYIFRVSNKEMTYAQQLRD 168 (207)
Q Consensus 96 FgMtR~DVI~IGlgvfllGg~l-Y~gLq~~GlD~~~AGiwsQ~lLVlGlvVgWv~------SYLfRV~tk~MTY~qQ~kd 168 (207)
+|++..+...+-..-- -|+.- --.-..+|++.....-...-+-=-|+ |-..- .+..+.-.+--.+.++..+
T Consensus 33 ~~lt~~~~~vL~~l~~-~~~~t~~eLa~~l~~~~~tvs~~l~~L~~~Gl-v~r~~~~~DrR~~~~~LT~~G~~~~~~~~~ 110 (142)
T 3ech_A 33 LDLTPPDVHVLKLIDE-QRGLNLQDLGRQMCRDKALITRKIRELEGRNL-VRRERNPSDQRSFQLFLTDEGLAIHLHAEL 110 (142)
T ss_dssp CCCCHHHHHHHHHHHH-TTTCCHHHHHHHHC---CHHHHHHHHHHHTTS-EEC----------CCEECHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHh-CCCcCHHHHHHHhCCCHHHHHHHHHHHHHCCC-EeeccCCCCCCeeeeEECHHHHHHHHHHHH
Confidence 6776666544433321 12111 12234778887766666666655554 11111 0112222233445666677
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 028601 169 YEDKVMQKRLEGLTEAELEALIEQVEE 195 (207)
Q Consensus 169 YE~avLQKRleeLtpEEle~L~aEIE~ 195 (207)
..++..++-++.|++||++.|.+-+++
T Consensus 111 ~~~~~~~~~~~~l~~~e~~~l~~~l~~ 137 (142)
T 3ech_A 111 IMSRVHDELFAPLTPVEQATLVHLLDQ 137 (142)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 778888888999999999999887765
No 41
>3hls_A Guanylate cyclase soluble subunit beta-1; coiled-coil domain, signaling helix, S-helix, CGMP biosynthesis, cytoplasm, GTP-binding, heme, iron; 2.15A {Rattus norvegicus}
Probab=48.97 E-value=15 Score=25.56 Aligned_cols=26 Identities=31% Similarity=0.516 Sum_probs=20.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 028601 173 VMQKRLEGLTEAELEALIEQVEEEKRR 199 (207)
Q Consensus 173 vLQKRleeLtpEEle~L~aEIE~Ek~~ 199 (207)
.|-+|+|..+ ++|+...+++++||+.
T Consensus 21 ~L~~~lE~~~-~~Lee~t~~L~~EK~k 46 (66)
T 3hls_A 21 KLTQELEMLT-DRLQLTLRALEDEKKK 46 (66)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 3777777766 7888999999988875
No 42
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=48.87 E-value=37 Score=23.47 Aligned_cols=74 Identities=14% Similarity=0.167 Sum_probs=48.6
Q ss_pred hHHhCCCcccchhHHHHHHHhhhhhheee------eeeeeeecCCccHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 028601 121 LELFGVDPLQAGNVVEVIVVLGLTLGWVS------TYIFRVSNKEMTYAQQLRDYEDKVMQKRLEGLTEAELEALIEQVE 194 (207)
Q Consensus 121 Lq~~GlD~~~AGiwsQ~lLVlGlvVgWv~------SYLfRV~tk~MTY~qQ~kdYE~avLQKRleeLtpEEle~L~aEIE 194 (207)
-+.+|++...+.-...-+.=-|+ |--.- .+.+..-.+-..+..+.....++.+++-++.++++|++.|.+-++
T Consensus 59 a~~l~~s~~~vs~~l~~L~~~gl-v~r~~~~~d~R~~~~~lT~~G~~~~~~~~~~~~~~~~~~~~~l~~~e~~~l~~~l~ 137 (146)
T 2fbh_A 59 AQSVGVEGPTLARLLDGLESQGL-VRRLAVAEDRRAKHIVLTPKADVLIADIEAIAASVRNDVLTGIDESEQALCQQVLL 137 (146)
T ss_dssp HHHHTCCHHHHHHHHHHHHHTTS-EEEECCBTTBCSCEEEECTTHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred HHHhCCChhhHHHHHHHHHHCCC-eeecCCCcccCeeeeEECHhHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 44678877766666666655554 22111 112333344456677777777888888999999999998887776
Q ss_pred H
Q 028601 195 E 195 (207)
Q Consensus 195 ~ 195 (207)
+
T Consensus 138 ~ 138 (146)
T 2fbh_A 138 R 138 (146)
T ss_dssp H
T ss_pred H
Confidence 5
No 43
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=47.89 E-value=35 Score=23.37 Aligned_cols=70 Identities=17% Similarity=0.107 Sum_probs=44.5
Q ss_pred hHHhCCCcccchhHHHHHHHhhhhhheeeee---------eeeeecCCccHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 028601 121 LELFGVDPLQAGNVVEVIVVLGLTLGWVSTY---------IFRVSNKEMTYAQQLRDYEDKVMQKRLEGLTEAELEALIE 191 (207)
Q Consensus 121 Lq~~GlD~~~AGiwsQ~lLVlGlvVgWv~SY---------LfRV~tk~MTY~qQ~kdYE~avLQKRleeLtpEEle~L~a 191 (207)
-..+|++.....-...-+-=- ||+-.. .++.-.+--.+.++..+..++..++-++.+++||++.|.+
T Consensus 59 a~~l~~~~~tvs~~l~~L~~~----glv~r~~~~~d~R~~~~~lT~~G~~~~~~~~~~~~~~~~~~~~~l~~~e~~~l~~ 134 (140)
T 2nnn_A 59 GRLTAMDAATIKGVVERLDKR----GLIQRSADPDDGRRLLVSLSPAGRAELEAGLAAAREINRQALAPLSLQEQETLRG 134 (140)
T ss_dssp HHHTTCCHHHHHHHHHHHHHT----TCEEEEEETTEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHC----CCEEeeCCCCCCCeeeeEECHhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 346777766555555554444 444332 2333333345566666666788888999999999999887
Q ss_pred HHH
Q 028601 192 QVE 194 (207)
Q Consensus 192 EIE 194 (207)
-++
T Consensus 135 ~l~ 137 (140)
T 2nnn_A 135 LLA 137 (140)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 44
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=47.81 E-value=26 Score=24.18 Aligned_cols=96 Identities=14% Similarity=0.132 Sum_probs=53.2
Q ss_pred CCccccchhhhhhhHHHHHHHHH-HHHhhHHhCCCcccchhHHHHHHHhhhhhheeeee---------eeeeecCCccHH
Q 028601 94 TPFGYTRKDVLLIGVGVTVIGYG-LKSGLELFGVDPLQAGNVVEVIVVLGLTLGWVSTY---------IFRVSNKEMTYA 163 (207)
Q Consensus 94 ~pFgMtR~DVI~IGlgvfllGg~-lY~gLq~~GlD~~~AGiwsQ~lLVlGlvVgWv~SY---------LfRV~tk~MTY~ 163 (207)
.++|++..+...+.... --|.. .--.-..+|++.....-...-+.=-|+ +-.. .+..--+-..+.
T Consensus 28 ~~~~lt~~~~~iL~~l~-~~~~~~~~~la~~l~~~~~tvs~~l~~L~~~gl----i~r~~~~~d~R~~~~~lT~~G~~~~ 102 (138)
T 1jgs_A 28 SPLDITAAQFKVLCSIR-CAACITPVELKKVLSVDLGALTRMLDRLVCKGW----VERLPNPNDKRGVLVKLTTGGAAIC 102 (138)
T ss_dssp TTTTSCHHHHHHHHHHH-HHSSBCHHHHHHHHTCCHHHHHHHHHHHHHTTS----EEEEECTTCSSCEEEEECHHHHHHH
T ss_pred hhcCCCHHHHHHHHHHH-hcCCCCHHHHHHHHCCChHHHHHHHHHHHHCCC----EEecCCcccCceeEeEEChhHHHHH
Confidence 35677766654443322 11211 112235778877766666665555554 3321 122222223445
Q ss_pred HHHHHHHH-HHHHHHHhcCCHHHHHHHHHHHH
Q 028601 164 QQLRDYED-KVMQKRLEGLTEAELEALIEQVE 194 (207)
Q Consensus 164 qQ~kdYE~-avLQKRleeLtpEEle~L~aEIE 194 (207)
++..+.-+ +..+.-++.|+++|++.|.+-++
T Consensus 103 ~~~~~~~~~~~~~~~~~~l~~~e~~~l~~~l~ 134 (138)
T 1jgs_A 103 EQCHQLVGQDLHQELTKNLTADEVATLEYLLK 134 (138)
T ss_dssp HHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 55555445 77778899999999999887664
No 45
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=47.14 E-value=51 Score=22.90 Aligned_cols=97 Identities=9% Similarity=-0.031 Sum_probs=52.8
Q ss_pred CccccchhhhhhhHHHHHHHHH-HHHhhHHhCCCcccchhHHHHHHHhhhhhheeeee---------eeeeecCCccHHH
Q 028601 95 PFGYTRKDVLLIGVGVTVIGYG-LKSGLELFGVDPLQAGNVVEVIVVLGLTLGWVSTY---------IFRVSNKEMTYAQ 164 (207)
Q Consensus 95 pFgMtR~DVI~IGlgvfllGg~-lY~gLq~~GlD~~~AGiwsQ~lLVlGlvVgWv~SY---------LfRV~tk~MTY~q 164 (207)
++|++..+..++-...---|.. .--.-..+|++.....-...-+-=-| ||--. .++.--+--.+.+
T Consensus 30 ~~~l~~~~~~iL~~l~~~~~~~~~~~la~~l~i~~~~vs~~l~~Le~~g----lv~r~~~~~d~R~~~~~lT~~G~~~~~ 105 (147)
T 2hr3_A 30 ADPVQFSQLVVLGAIDRLGGDVTPSELAAAERMRSSNLAALLRELERGG----LIVRHADPQDGRRTRVSLSSEGRRNLY 105 (147)
T ss_dssp CCHHHHHHHHHHHHHHHTTSCBCHHHHHHHTTCCHHHHHHHHHHHHHTT----SEEEEC------CCEEEECHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHHcCCCCCHHHHHHHhCCChhhHHHHHHHHHHCC----CEeeCCCCCCCCceeeEECHHHHHHHH
Confidence 5677766654433222101111 12223467776665555555555444 44221 1222222234455
Q ss_pred HHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHH
Q 028601 165 QLRDYEDKVMQKRLE-GLTEAELEALIEQVEE 195 (207)
Q Consensus 165 Q~kdYE~avLQKRle-eLtpEEle~L~aEIE~ 195 (207)
+...-.++..++-++ .|+++|++.|.+-++.
T Consensus 106 ~~~~~~~~~~~~~~~~~l~~~e~~~l~~~l~~ 137 (147)
T 2hr3_A 106 GNRAKREEWLVRAMHACLDESERALLAAAGPL 137 (147)
T ss_dssp HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Confidence 555555778888898 9999999998885544
No 46
>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}
Probab=46.52 E-value=4.8 Score=27.72 Aligned_cols=28 Identities=25% Similarity=0.409 Sum_probs=19.1
Q ss_pred ccchhhhhhhHHHHHHHHHHHHhhHHhCCCc
Q 028601 98 YTRKDVLLIGVGVTVIGYGLKSGLELFGVDP 128 (207)
Q Consensus 98 MtR~DVI~IGlgvfllGg~lY~gLq~~GlD~ 128 (207)
|| .||+.||-|. +|..+-+.|...|++-
T Consensus 1 Mt-~dV~IIGaGp--aGL~aA~~La~~G~~V 28 (336)
T 3kkj_A 1 MT-VPIAIIGTGI--AGLSAAQALTAAGHQV 28 (336)
T ss_dssp -C-CCEEEECCSH--HHHHHHHHHHHTTCCE
T ss_pred CC-CCEEEECcCH--HHHHHHHHHHHCCCCE
Confidence 44 6899999997 4444555577778753
No 47
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=45.56 E-value=13 Score=25.17 Aligned_cols=20 Identities=30% Similarity=0.463 Sum_probs=16.8
Q ss_pred HHhcCCHHHHHHHHHHHHHH
Q 028601 177 RLEGLTEAELEALIEQVEEE 196 (207)
Q Consensus 177 RleeLtpEEle~L~aEIE~E 196 (207)
+-|..+|||+++|..|+..-
T Consensus 13 kkegfspeelaaleselqal 32 (48)
T 1g6u_A 13 KKEGFSPEELAALESELQAL 32 (48)
T ss_dssp HHTTCSHHHHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHHHHH
Confidence 44789999999999998763
No 48
>3lfp_A CSP231I C protein; transcriptional regulator, DNA binding protein, helix-turn-H restriction-modification, transcription; 2.00A {Citrobacter SP} PDB: 3lis_A
Probab=44.46 E-value=38 Score=22.94 Aligned_cols=55 Identities=15% Similarity=0.096 Sum_probs=38.1
Q ss_pred CCCcccchhHHHHHHHhhhhhheeeeeeeeeecCCccHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 028601 125 GVDPLQAGNVVEVIVVLGLTLGWVSTYIFRVSNKEMTYAQQLRDYEDKVMQKRLEGLTEAELEALIEQVEEE 196 (207)
Q Consensus 125 GlD~~~AGiwsQ~lLVlGlvVgWv~SYLfRV~tk~MTY~qQ~kdYE~avLQKRleeLtpEEle~L~aEIE~E 196 (207)
|--..+...+..+.=++|+-+.|+... + -+.+.+-..+..|+|++++++ +.++..
T Consensus 41 g~~~p~~~~l~~la~~l~v~~~~l~~~-------~---------~~~~~~~~~~~~l~~~~~~~~-~~l~~~ 95 (98)
T 3lfp_A 41 GKHAPDFEMANRLAKVLKIPVSYLYTP-------E---------DDLAQIILTWNELNEQERKRI-NFYIRK 95 (98)
T ss_dssp TSSCCCHHHHHHHHHHHTSCGGGGGCC-------C---------HHHHHHHHHHTTCCHHHHHHH-HHHHTT
T ss_pred CCCCCCHHHHHHHHHHHCcCHHHHhCC-------C---------hhHHHHHHHHHhCCHHHHHHH-HHHHHh
Confidence 444556666777777778877777543 1 123456688999999999999 777653
No 49
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=44.33 E-value=57 Score=23.21 Aligned_cols=72 Identities=11% Similarity=0.091 Sum_probs=45.2
Q ss_pred HHhCCCcccchhHHHHHHHhhhhhheeee---------eeeeeecCCccHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 028601 122 ELFGVDPLQAGNVVEVIVVLGLTLGWVST---------YIFRVSNKEMTYAQQLRDYEDKVMQKRLEGLTEAELEALIEQ 192 (207)
Q Consensus 122 q~~GlD~~~AGiwsQ~lLVlGlvVgWv~S---------YLfRV~tk~MTY~qQ~kdYE~avLQKRleeLtpEEle~L~aE 192 (207)
..+|++.....-...-+-=-| ||-- +.++.-.+--.+.++......+.+++-++.|++||++.|.+-
T Consensus 74 ~~l~is~~tvs~~l~~Le~~G----li~r~~~~~d~R~~~~~lT~~G~~~~~~~~~~~~~~~~~~~~~l~~~e~~~l~~~ 149 (162)
T 3cjn_A 74 IFAVVEQSTLSRALDGLQADG----LVRREVDSDDQRSSRVYLTPAGRAVYDRLWPHMRASHDRMFQGITPQERQAFLAT 149 (162)
T ss_dssp HHHTCCHHHHHHHHHHHHHTT----SEEEEEC--CCSSEEEEECHHHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHHHHHCC----CEEecCCCCCCCeeEEEECHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 456766555555555444444 3332 122333333456666677778888889999999999998887
Q ss_pred HHHHH
Q 028601 193 VEEEK 197 (207)
Q Consensus 193 IE~Ek 197 (207)
+++-.
T Consensus 150 l~~l~ 154 (162)
T 3cjn_A 150 LNKML 154 (162)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76633
No 50
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=43.49 E-value=26 Score=25.47 Aligned_cols=24 Identities=21% Similarity=0.250 Sum_probs=19.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 028601 172 KVMQKRLEGLTEAELEALIEQVEE 195 (207)
Q Consensus 172 avLQKRleeLtpEEle~L~aEIE~ 195 (207)
+.++.-++.||+||++.|.+-+++
T Consensus 98 ~~~~~~~~~ls~eE~~~L~~lL~~ 121 (138)
T 2g9w_A 98 AALVHFVERVGADEADALRRALAE 121 (138)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHH
Confidence 456666889999999988877765
No 51
>1uw0_A DNA ligase III; DNA repair, zinc finger, PARP-like finger, cell division, DNA replication, nuclear protein; HET: DNA; NMR {Homo sapiens} SCOP: g.39.1.12
Probab=41.54 E-value=18 Score=27.36 Aligned_cols=23 Identities=17% Similarity=0.332 Sum_probs=19.5
Q ss_pred HhcCCHHHHHHHHHHHHHHHhcc
Q 028601 178 LEGLTEAELEALIEQVEEEKRRL 200 (207)
Q Consensus 178 leeLtpEEle~L~aEIE~Ek~~~ 200 (207)
|++|++|+++++.+.|++-++..
T Consensus 79 ~~~L~~eDQ~~I~~~i~~~~~~~ 101 (117)
T 1uw0_A 79 WEELEDNEKEQITQHIADLSSKA 101 (117)
T ss_dssp TTTSCHHHHHHHHHHHHHHHCCS
T ss_pred hHHCCHHHHHHHHHHHHHhhccC
Confidence 68999999999999999865543
No 52
>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3 PDB: 2yal_A
Probab=41.32 E-value=58 Score=21.91 Aligned_cols=70 Identities=14% Similarity=0.174 Sum_probs=42.0
Q ss_pred hC-CCcccchhHHHHHHHhhhhhheeeeeeeeeecCCccHHHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHh
Q 028601 124 FG-VDPLQAGNVVEVIVVLGLTLGWVSTYIFRVSNKEMTYAQQLRDYEDKVMQKRL-EGLTEAELEALIEQVEEEKR 198 (207)
Q Consensus 124 ~G-lD~~~AGiwsQ~lLVlGlvVgWv~SYLfRV~tk~MTY~qQ~kdYE~avLQKRl-eeLtpEEle~L~aEIE~Ek~ 198 (207)
-| -...+...+..+.-++|+-+.|+...- ..+.-.....+-....+...+ +.||++|++.+.+-++.-+.
T Consensus 36 ~g~~~~p~~~~l~~ia~~l~v~~~~l~~~~-----~~~~~~~~~~~~~~~~l~~~~~~~l~~e~~~~i~~~i~~l~~ 107 (111)
T 1b0n_A 36 RNLQTNPSIQFLEKVSAVLDVSVHTLLDEK-----HETEYDGQLDSEWEKLVRDAMTSGVSKKQFREFLDYQKWRKS 107 (111)
T ss_dssp TTCCSCCCHHHHHHHHHHHTCCHHHHHCCT-----TCC-----CCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCHHHHHHHHHHHCcCHHHHhcCC-----CCCCCcccccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Confidence 35 445566667777777777777776432 111111111122244566778 99999999999988876443
No 53
>2dmj_A Poly (ADP-ribose) polymerase family, member 1; zinc finger, PARP-1, ADPRT, NAD(+) ADP-ribosyltransferase 1, poly(ADP-ribose) synthetase 1; NMR {Homo sapiens}
Probab=40.38 E-value=14 Score=27.41 Aligned_cols=24 Identities=8% Similarity=0.048 Sum_probs=19.3
Q ss_pred HhcCCHHHHHHHHHHHHHHHhccc
Q 028601 178 LEGLTEAELEALIEQVEEEKRRLA 201 (207)
Q Consensus 178 leeLtpEEle~L~aEIE~Ek~~~~ 201 (207)
|++|++|+++++.+-||+..-.+.
T Consensus 81 ~~~L~~eDq~~i~~~~e~g~~~p~ 104 (106)
T 2dmj_A 81 FSELRWDDQQKVKKTAEAGGSGPS 104 (106)
T ss_dssp TTTSCHHHHHHHHHHHHHCSSCCC
T ss_pred hHHCCHHHHHHHHHHHHhCCCCCC
Confidence 788999999999999987554443
No 54
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=39.42 E-value=47 Score=23.47 Aligned_cols=96 Identities=18% Similarity=0.200 Sum_probs=59.6
Q ss_pred CCccccchhhhhhhHHHHHHHHHHH-HhhHHhCCCcccchhHHHHHHHhhhhhheeee-----------eeeeeecCCcc
Q 028601 94 TPFGYTRKDVLLIGVGVTVIGYGLK-SGLELFGVDPLQAGNVVEVIVVLGLTLGWVST-----------YIFRVSNKEMT 161 (207)
Q Consensus 94 ~pFgMtR~DVI~IGlgvfllGg~lY-~gLq~~GlD~~~AGiwsQ~lLVlGlvVgWv~S-----------YLfRV~tk~MT 161 (207)
.++|+|..+...+... --|..-. -.-..+|++.....-...-+-=-|+ |.- +....-.+-..
T Consensus 32 ~~~~lt~~q~~iL~~l--~~~~~t~~eLa~~l~~~~~~vs~~l~~Le~~Gl----v~r~~~~~~~D~R~~~~~lT~~G~~ 105 (151)
T 3kp7_A 32 TEYGISAEQSHVLNML--SIEALTVGQITEKQGVNKAAVSRRVKKLLNAEL----VKLEKPDSNTDQRLKIIKLSNKGKK 105 (151)
T ss_dssp HHHTCCHHHHHHHHHH--HHSCBCHHHHHHHHCSCSSHHHHHHHHHHHTTS----EEC-----------CCBEECHHHHH
T ss_pred hcCCCCHHHHHHHHHH--HcCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCC----EEeeCCCCCCCCCeeEEEECHhHHH
Confidence 3567777776655544 2222222 2245788888777766666665554 331 22223333344
Q ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 028601 162 YAQQLRDYEDKVMQKRLEGLTEAELEALIEQVEE 195 (207)
Q Consensus 162 Y~qQ~kdYE~avLQKRleeLtpEEle~L~aEIE~ 195 (207)
+.++.....++.+++-++.+++||++.+.+-++.
T Consensus 106 ~~~~~~~~~~~~~~~~~~~l~~~e~~~l~~~l~~ 139 (151)
T 3kp7_A 106 YIKERKAIMSHIASDMTSDFDSKEIEKVRQVLEI 139 (151)
T ss_dssp HHHHHHHHHHHHHHHTTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 5666666667888888999999999988877765
No 55
>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}
Probab=37.14 E-value=7.6 Score=30.64 Aligned_cols=29 Identities=28% Similarity=0.382 Sum_probs=16.2
Q ss_pred cccchhhhhhhHHHHHHHHHHHHhhHHhCCC
Q 028601 97 GYTRKDVLLIGVGVTVIGYGLKSGLELFGVD 127 (207)
Q Consensus 97 gMtR~DVI~IGlgvfllGg~lY~gLq~~GlD 127 (207)
||..-||+.||-|. +|..+-+.|...|++
T Consensus 1 ~Me~yDViIVGaGp--aGl~~A~~La~~G~~ 29 (397)
T 3oz2_A 1 GMETYDVLVVGGGP--GGSTAARYAAKYGLK 29 (397)
T ss_dssp CEEEEEEEEECCSH--HHHHHHHHHHHTTCC
T ss_pred CCCCCCEEEECcCH--HHHHHHHHHHHCCCc
Confidence 66667777777765 333333334455543
No 56
>3h4p_a Proteasome subunit beta; core particle, cytoplasm, hydrolase, protease, threonine protease; 4.10A {Methanocaldococcus jannaschii}
Probab=37.10 E-value=7.8 Score=30.86 Aligned_cols=25 Identities=8% Similarity=0.368 Sum_probs=16.3
Q ss_pred HHhcCCHHHHHHHHHHHHHHHhccc
Q 028601 177 RLEGLTEAELEALIEQVEEEKRRLA 201 (207)
Q Consensus 177 RleeLtpEEle~L~aEIE~Ek~~~~ 201 (207)
.++.|++||++.+++++++|+...+
T Consensus 186 g~~~l~~~ei~~~l~~~~~~~~~~~ 210 (219)
T 3h4p_a 186 GVKIFEDEEIEKILDSMKAKPKKKT 210 (219)
T ss_dssp EEEECCHHHHHHHHHHCC-------
T ss_pred CeEEcCHHHHHHHHHHhhccccccc
Confidence 3788999999999999998766544
No 57
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=36.33 E-value=28 Score=24.56 Aligned_cols=71 Identities=25% Similarity=0.286 Sum_probs=44.2
Q ss_pred hHHhCCCcccchhHHHHHHHhhhhhheeee-----------eeeeeecCCccHHHHHHHH--HHHHHHHHHhcCCHHHHH
Q 028601 121 LELFGVDPLQAGNVVEVIVVLGLTLGWVST-----------YIFRVSNKEMTYAQQLRDY--EDKVMQKRLEGLTEAELE 187 (207)
Q Consensus 121 Lq~~GlD~~~AGiwsQ~lLVlGlvVgWv~S-----------YLfRV~tk~MTY~qQ~kdY--E~avLQKRleeLtpEEle 187 (207)
-..+|++.....-...-+.=-| ||-. +.++.-.+-..+.++..+- -.+.+++-++.|+|||++
T Consensus 62 a~~l~~~~~tvs~~l~~Le~~G----lv~r~~~~~~~d~R~~~~~LT~~G~~~~~~~~~~~~~~~~~~~~~~~l~~~e~~ 137 (154)
T 2qww_A 62 TKRLIITGSSAAANVDGLISLG----LVVKLNKTIPNDSMDLTLKLSKKGEDLSKRSTANAFMYKAMMKVFENLTENEIE 137 (154)
T ss_dssp HHHHTCCHHHHHHHHHHHHHTT----SEEESCC--CTTCTTCEEEECHHHHHHHHHHHSCHHHHHHHHHHHTTSCHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHCC----CEEecCcCCCCCCceeEeEECHHHHHHHHHHHhhHHHHHHHHHHHhcCCHHHHH
Confidence 4467776655554444444444 4443 1233333334455555555 667788889999999999
Q ss_pred HHHHHHHH
Q 028601 188 ALIEQVEE 195 (207)
Q Consensus 188 ~L~aEIE~ 195 (207)
.|.+-++.
T Consensus 138 ~l~~~l~~ 145 (154)
T 2qww_A 138 ELIRLNKK 145 (154)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99887765
No 58
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=36.13 E-value=4.8 Score=29.88 Aligned_cols=30 Identities=7% Similarity=0.180 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 028601 163 AQQLRDYEDKVMQKRLEGLTEAELEALIEQV 193 (207)
Q Consensus 163 ~qQ~kdYE~avLQKRleeLtpEEle~L~aEI 193 (207)
.++.+......+++.++++. +++++|.++.
T Consensus 105 ~~~~~~~~~~~l~~~~~~l~-~~l~~le~~~ 134 (139)
T 3eff_K 105 VRHSEKAAEEAYTRTTRALH-ERFDRLERML 134 (139)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHT
T ss_pred HHhhHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 34444444555666654443 3444444443
No 59
>3ayf_A Nitric oxide reductase; oxidoreductase; HET: HEM BOG EPE LOP; 2.50A {Geobacillus stearothermophilus} PDB: 3ayg_A*
Probab=36.07 E-value=17 Score=35.80 Aligned_cols=34 Identities=26% Similarity=0.255 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 028601 166 LRDYEDKVMQKRLEGLTEAELEALIEQVEEEKRR 199 (207)
Q Consensus 166 ~kdYE~avLQKRleeLtpEEle~L~aEIE~Ek~~ 199 (207)
++.|.++.-.|.+++|++||++.+++++.+|=+.
T Consensus 111 ~~~~a~~~~g~~~~~l~~~~~~~~~~~~~~elr~ 144 (800)
T 3ayf_A 111 QDYKAKERYNKPFADLTDDEKSIIREQVIKEMRK 144 (800)
T ss_dssp HHHHTC-------CCSCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHhhCcchhhcCHHHHHHHHHHHHHHHHh
Confidence 3444456667899999999999999999887654
No 60
>1utr_A Uteroglobin; clara cell 17 kDa protein (CC10), phospholipase A2 inhibitor, clara cell phospholipid-binding protein, progesterone binding; HET: PCB; NMR {Rattus norvegicus} SCOP: a.101.1.1
Probab=36.04 E-value=25 Score=25.73 Aligned_cols=36 Identities=11% Similarity=0.337 Sum_probs=29.6
Q ss_pred ccHHHHHHHHH--------HHHHHHHHhcCCHHHHHHHHHHHHH
Q 028601 160 MTYAQQLRDYE--------DKVMQKRLEGLTEAELEALIEQVEE 195 (207)
Q Consensus 160 MTY~qQ~kdYE--------~avLQKRleeLtpEEle~L~aEIE~ 195 (207)
=-|.++++.|. ...+.|-+++||+|.++.+..=++.
T Consensus 40 ~~Y~~~L~~y~~~~~a~~A~~~lK~Cvd~ls~e~r~~i~~ll~~ 83 (96)
T 1utr_A 40 SNYEAALKPFNPASDLQNAGTQLKRLVDTLPQETRINIVKLTEK 83 (96)
T ss_dssp SHHHHHHGGGCCCHHHHHHHHHHHHHHTTSCSHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 67999999998 4567788999999999887665554
No 61
>3kh1_A Predicted metal-dependent phosphohydrolase; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.37A {Magnetospirillum magnetotacticum ms-1}
Probab=36.04 E-value=26 Score=28.74 Aligned_cols=40 Identities=18% Similarity=0.168 Sum_probs=26.1
Q ss_pred ecCCccHH-----HHHHHHHHHHHHHHHhcCCHH---HHHHHHHHHHH
Q 028601 156 SNKEMTYA-----QQLRDYEDKVMQKRLEGLTEA---ELEALIEQVEE 195 (207)
Q Consensus 156 ~tk~MTY~-----qQ~kdYE~avLQKRleeLtpE---Ele~L~aEIE~ 195 (207)
.+|+|+|. ...++.|.+.+++.|..||++ |+..|-.|-|+
T Consensus 81 ~tGDi~~~~~~~~~~~~~~E~~A~~~l~~~LP~~~~~e~~~Lw~EyE~ 128 (200)
T 3kh1_A 81 DAGDTFIHDEAGNEDKEERERKAAARLFGLLPPDQAAEYSALWQEYEA 128 (200)
T ss_dssp HHCCCCTTCCC---CHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred HhCCccccccccHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHc
Confidence 45555553 234677888888888889864 55566666553
No 62
>3pjs_K KCSA, voltage-gated potassium channel; ION channel, conducts K+ IONS, cell membrane, transport PROT; 3.80A {Streptomyces lividans} PDB: 1f6g_A
Probab=35.74 E-value=10 Score=29.18 Aligned_cols=25 Identities=8% Similarity=0.307 Sum_probs=13.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHH
Q 028601 171 DKVMQKRLEGLTEAELEALIEQVEEE 196 (207)
Q Consensus 171 ~avLQKRleeLtpEEle~L~aEIE~E 196 (207)
...+++++++|. +|+++|.++++++
T Consensus 140 ~~~l~~~i~~L~-~~l~~le~~~~~~ 164 (166)
T 3pjs_K 140 EEAYTRTTRALH-ERFDRLERMLDDN 164 (166)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHhcc
Confidence 344566665554 5566665555543
No 63
>2vqe_M 30S ribosomal protein S13, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: a.156.1.1 PDB: 1gix_P* 1hnw_M* 1hnx_M* 1hnz_M* 1hr0_M 1ibk_M* 1ibl_M* 1ibm_M 1j5e_M 1jgo_P* 1jgp_P* 1jgq_P* 1mj1_P* 1ml5_P* 1n32_M* 1n33_M* 1n34_M 1n36_M 1xmo_M* 1xmq_M* ...
Probab=35.06 E-value=14 Score=28.91 Aligned_cols=21 Identities=48% Similarity=0.548 Sum_probs=18.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 028601 175 QKRLEGLTEAELEALIEQVEE 195 (207)
Q Consensus 175 QKRleeLtpEEle~L~aEIE~ 195 (207)
.+|..+||+||+++|.++|++
T Consensus 42 ~~r~~~Lt~~ei~~l~~~i~~ 62 (126)
T 2vqe_M 42 ATRVKDLTEAEVVRLREYVEN 62 (126)
T ss_dssp TSBGGGCCHHHHHHHHHHHHT
T ss_pred ccccCcCCHHHHHHHHHHHHH
Confidence 468899999999999999974
No 64
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=35.04 E-value=21 Score=25.36 Aligned_cols=70 Identities=13% Similarity=0.169 Sum_probs=42.6
Q ss_pred HHhCCCcccchhHHHHHHHhhhhhheeee---------eeeeeecCCccHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 028601 122 ELFGVDPLQAGNVVEVIVVLGLTLGWVST---------YIFRVSNKEMTYAQQLRDYEDKVMQKRLEGLTEAELEALIEQ 192 (207)
Q Consensus 122 q~~GlD~~~AGiwsQ~lLVlGlvVgWv~S---------YLfRV~tk~MTY~qQ~kdYE~avLQKRleeLtpEEle~L~aE 192 (207)
..+|++.....-...-+.=-| ||.- +.++.--+-..+.++.....++..++-++.|++||++.|.+-
T Consensus 65 ~~l~i~~~tvs~~l~~Le~~G----lv~r~~~~~d~R~~~~~lT~~G~~~~~~~~~~~~~~~~~~~~~l~~~e~~~l~~~ 140 (155)
T 3cdh_A 65 KLSLMEQSRMTRIVDQMDARG----LVTRVADAKDKRRVRVRLTDDGRALAESLVASARAHETRLLSALADTDAARIKGV 140 (155)
T ss_dssp HHTTCCHHHHHHHHHHHHHTT----SEEECC------CCCEEECHHHHHHHHHHHHHHHHHHHHHHHHTTTSGGGGHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHCC----CEEeccCCCcCCeeEeEECHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 356666555555544444444 4432 223333333445566666667788888999999998888777
Q ss_pred HHH
Q 028601 193 VEE 195 (207)
Q Consensus 193 IE~ 195 (207)
+++
T Consensus 141 l~~ 143 (155)
T 3cdh_A 141 LRT 143 (155)
T ss_dssp HHH
T ss_pred HHH
Confidence 665
No 65
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=34.97 E-value=71 Score=27.53 Aligned_cols=21 Identities=33% Similarity=0.461 Sum_probs=16.8
Q ss_pred HHHhcCCHHHHHHHHHHHHHH
Q 028601 176 KRLEGLTEAELEALIEQVEEE 196 (207)
Q Consensus 176 KRleeLtpEEle~L~aEIE~E 196 (207)
++...++++|++.+++++.+.
T Consensus 55 ~~~~~~s~~~l~~~~~~~~~a 75 (280)
T 3ukm_A 55 EEHECLSEQQLEQFLGRVLEA 75 (280)
T ss_dssp HHCTTCCHHHHHHHHHHHHHH
T ss_pred HhcccccHHHHHHHHHHHHHH
Confidence 455679999999999987664
No 66
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=34.82 E-value=31 Score=23.70 Aligned_cols=71 Identities=10% Similarity=0.115 Sum_probs=40.9
Q ss_pred hHHhCCCcccchhHHHHHHHhhhhhheeeee---------eeeeecCCccHH-HHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 028601 121 LELFGVDPLQAGNVVEVIVVLGLTLGWVSTY---------IFRVSNKEMTYA-QQLRDYEDKVMQKRLEGLTEAELEALI 190 (207)
Q Consensus 121 Lq~~GlD~~~AGiwsQ~lLVlGlvVgWv~SY---------LfRV~tk~MTY~-qQ~kdYE~avLQKRleeLtpEEle~L~ 190 (207)
-..+|++.....-...-+-=-| |+-.. .++.-.+--.+. ++..+..++..++-++.++++|++.|.
T Consensus 52 a~~l~is~~~vs~~l~~L~~~g----li~~~~~~~d~r~~~~~lT~~G~~~~~~~~~~~~~~~~~~~~~~l~~~e~~~l~ 127 (142)
T 3bdd_A 52 QERLQIDRAAVTRHLKLLEESG----YIIRKRNPDNQREVLVWPTEQAREALITNPSAHHQAIKTSMNQILTVEESEQFL 127 (142)
T ss_dssp HHHHTCCHHHHHHHHHHHHHTT----SEEEEECSSSTTCEEEEECHHHHHHHTTSCCHHHHHHHHHHHTSSCHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHCC----CEEecCCCCCCCeeEEEECHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 3467776665555555554444 33321 122211222233 444445567777788999999999888
Q ss_pred HHHHH
Q 028601 191 EQVEE 195 (207)
Q Consensus 191 aEIE~ 195 (207)
+-+++
T Consensus 128 ~~l~~ 132 (142)
T 3bdd_A 128 ATLDK 132 (142)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77665
No 67
>3lqv_P Splicing factor 3B subunit 1; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} PDB: 2f9d_P 2f9j_P
Probab=34.17 E-value=24 Score=23.28 Aligned_cols=26 Identities=27% Similarity=0.586 Sum_probs=19.1
Q ss_pred HHHHHH-HHHHHHHHhcCCHHHHHHHH
Q 028601 165 QLRDYE-DKVMQKRLEGLTEAELEALI 190 (207)
Q Consensus 165 Q~kdYE-~avLQKRleeLtpEEle~L~ 190 (207)
|...|+ +..+.+|=.-||+|||.+++
T Consensus 6 ~~~~~~~~~ei~~RNrpltDEeLD~mL 32 (39)
T 3lqv_P 6 QLQAWRWEREIDERNRPLSDEELDAMF 32 (39)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHTC
T ss_pred HHHHHHhhccchhhcCCCCHHHHHHhC
Confidence 444444 55788888899999998874
No 68
>1jw2_A Hemolysin expression modulating protein HHA; structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Escherichia coli} SCOP: a.23.5.1 PDB: 2jvp_A 2k5s_A
Probab=34.12 E-value=1.2e+02 Score=22.10 Aligned_cols=47 Identities=23% Similarity=0.415 Sum_probs=32.6
Q ss_pred cCCcc---HHHHHHHHH-----HHHHHHHHhcCCHHHHHHHHHHHHHHHhccccC
Q 028601 157 NKEMT---YAQQLRDYE-----DKVMQKRLEGLTEAELEALIEQVEEEKRRLASG 203 (207)
Q Consensus 157 tk~MT---Y~qQ~kdYE-----~avLQKRleeLtpEEle~L~aEIE~Ek~~~~~~ 203 (207)
++.|| |--|.|+.. +.++++--..||++|++.+.+-.+--..+...|
T Consensus 3 ~~~Mtk~d~L~k~Rrc~s~eTLEkv~e~~~y~Lt~~el~~f~~AaDHR~AEL~~~ 57 (72)
T 1jw2_A 3 EKPLTKTDYLMRLRRCQTIDTLERVIEKNKYELSDNELAVFYSAADHRLAELTMN 57 (72)
T ss_dssp STTCCHHHHHHHHHTSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHSS
T ss_pred cccccHHHHHHHHHhcCcHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhC
Confidence 34576 444544443 788888889999999999988666555444444
No 69
>3cgv_A Geranylgeranyl reductase related protein; NP_393992.1, geranylgeranyl bacteriochlorophyll reductase- like FIXC homolog; HET: MSE FAD UNL; 1.60A {Thermoplasma acidophilum dsm 1728} PDB: 3oz2_A*
Probab=34.10 E-value=9.1 Score=30.73 Aligned_cols=28 Identities=29% Similarity=0.430 Sum_probs=16.4
Q ss_pred cccchhhhhhhHHHHHHHHHHHHhhHHhCC
Q 028601 97 GYTRKDVLLIGVGVTVIGYGLKSGLELFGV 126 (207)
Q Consensus 97 gMtR~DVI~IGlgvfllGg~lY~gLq~~Gl 126 (207)
||.+.||+.||-|+. |..+-+.|...|+
T Consensus 1 gm~~~dVvIvG~G~a--Gl~~A~~La~~G~ 28 (397)
T 3cgv_A 1 GMETYDVLVVGGGPG--GSTAARYAAKYGL 28 (397)
T ss_dssp CEEEEEEEEECCSHH--HHHHHHHHHHTTC
T ss_pred CCccCCEEEECcCHH--HHHHHHHHHHCCC
Confidence 577778888887763 3333333444454
No 70
>1r73_A TM1492, 50S ribosomal protein L29; ribosome, structural genomics, PSI, protein structure initiative, joint center for structural genomics; NMR {Thermotoga maritima} SCOP: a.2.2.1
Probab=33.98 E-value=28 Score=24.14 Aligned_cols=20 Identities=30% Similarity=0.544 Sum_probs=15.9
Q ss_pred HHhcCCHHHHHHHHHHHHHH
Q 028601 177 RLEGLTEAELEALIEQVEEE 196 (207)
Q Consensus 177 RleeLtpEEle~L~aEIE~E 196 (207)
-+.+||+|||.+.+.|+.+|
T Consensus 5 elr~~s~~EL~~~l~elk~E 24 (66)
T 1r73_A 5 ELRNYTDEELKNLLEEKKRQ 24 (66)
T ss_dssp HHHHSCHHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHH
Confidence 36788999998888888765
No 71
>3ivp_A Putative transposon-related DNA-binding protein; APC62618, clostridium diffic structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile}
Probab=33.12 E-value=54 Score=23.07 Aligned_cols=62 Identities=6% Similarity=0.140 Sum_probs=40.6
Q ss_pred hCCCcccchhHHHHHHHhhhhhheeeeeeeeeecCCccHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 028601 124 FGVDPLQAGNVVEVIVVLGLTLGWVSTYIFRVSNKEMTYAQQLRDYEDKVMQKRLEGLTEAELEALIEQVEE 195 (207)
Q Consensus 124 ~GlD~~~AGiwsQ~lLVlGlvVgWv~SYLfRV~tk~MTY~qQ~kdYE~avLQKRleeLtpEEle~L~aEIE~ 195 (207)
-|--..+...+..+.-++|+.+.|+...- ..... .-....+...++.|++++++.+.+-++.
T Consensus 47 ~g~~~p~~~~l~~ia~~l~v~~~~l~~~~----~~~~~------~~~~~~l~~~~~~l~~~~~~~i~~~i~~ 108 (126)
T 3ivp_A 47 NKGQHPSLQVLYDLVSLLNVSVDEFFLPA----SSQVK------STKRRQLENKIDNFTDADLVIMESVADG 108 (126)
T ss_dssp HSCCCCCHHHHHHHHHHHTCCSHHHHSCC----CCCCC------CHHHHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHCcCHHHHhCCC----ccccc------hHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 35445666777777777777777766531 11111 1234567788999999999998877764
No 72
>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=32.64 E-value=71 Score=26.34 Aligned_cols=63 Identities=19% Similarity=0.329 Sum_probs=38.1
Q ss_pred hHHhCCCcccchhHHHHHHHhhhhhheeeeeeeeeecCCccHHHHHHHHHHHHHHH-----HH--hcCCHHHHHHHHHHH
Q 028601 121 LELFGVDPLQAGNVVEVIVVLGLTLGWVSTYIFRVSNKEMTYAQQLRDYEDKVMQK-----RL--EGLTEAELEALIEQV 193 (207)
Q Consensus 121 Lq~~GlD~~~AGiwsQ~lLVlGlvVgWv~SYLfRV~tk~MTY~qQ~kdYE~avLQK-----Rl--eeLtpEEle~L~aEI 193 (207)
-..-|=-.+.+-=+..++=-+|. ..|+- .-...+.+|++.+-.| |+ ..||+||+.++|+|+
T Consensus 61 a~~~~RKTI~~eDVl~Al~~LgF-----~~fv~-------~lk~~L~~yre~~~~kkr~~~K~~~sg~~~Eel~~~Qqel 128 (179)
T 1jfi_B 61 CNKSEKKTISPEHVIQALESLGF-----GSYIS-------EVKEVLQECKTVALKRRKASSRLENLGIPEEELLRQQQEL 128 (179)
T ss_dssp HHHTTCSSBCHHHHHHHHHHHTT-----GGGHH-------HHHHHHHHHHHHHHHHHHHHHHHHHSSSCHHHHHHHHHHH
T ss_pred HHHcCCCcCCHHHHHHHHHhcCh-----HHHHH-------HHHHHHHHHHHHHHhCccccchhhccCCCHHHHHHHHHHH
Confidence 34556667777767676666664 12221 2233444555444433 23 458999999999998
Q ss_pred HH
Q 028601 194 EE 195 (207)
Q Consensus 194 E~ 195 (207)
-+
T Consensus 129 f~ 130 (179)
T 1jfi_B 129 FA 130 (179)
T ss_dssp HH
T ss_pred HH
Confidence 75
No 73
>3fz4_A Putative arsenate reductase; APC61768, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.38A {Streptococcus mutans UA159} SCOP: c.47.1.0
Probab=32.62 E-value=34 Score=25.15 Aligned_cols=25 Identities=20% Similarity=0.340 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHH
Q 028601 168 DYEDKVMQKRLEGLTEAELEALIEQ 192 (207)
Q Consensus 168 dYE~avLQKRleeLtpEEle~L~aE 192 (207)
.|++--+..++++|+++|+-+++.+
T Consensus 66 ~~k~l~l~~~~~~ls~~~~~~lm~~ 90 (120)
T 3fz4_A 66 SYRALGLKDKLHQLSLDEAANLLAS 90 (120)
T ss_dssp HHHHTTHHHHGGGCCHHHHHHHHHH
T ss_pred chhhcCcccccccCCHHHHHHHHHh
Confidence 5667777888999999999888765
No 74
>1v9x_A Poly (ADP-ribose) polymerase; PARP, DNA repair, inflammation, cell death, structural genomics; NMR {Arabidopsis thaliana}
Probab=31.40 E-value=13 Score=28.37 Aligned_cols=24 Identities=17% Similarity=0.133 Sum_probs=19.2
Q ss_pred HHhcCCHHHHHHHHHHHHHHHhcc
Q 028601 177 RLEGLTEAELEALIEQVEEEKRRL 200 (207)
Q Consensus 177 RleeLtpEEle~L~aEIE~Ek~~~ 200 (207)
=|++|++|+++++.+.|++-...+
T Consensus 74 G~~~L~~eDQ~~I~~~i~~~~~~~ 97 (114)
T 1v9x_A 74 GIESLRWEDQQKIRKYVESGAGSN 97 (114)
T ss_dssp TTTTSCHHHHHHHHHHHSSCSSST
T ss_pred ChHHCCHHHHHHHHHHHHHcCCCC
Confidence 468999999999999998754443
No 75
>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*
Probab=31.04 E-value=9.1 Score=31.57 Aligned_cols=32 Identities=22% Similarity=0.408 Sum_probs=18.3
Q ss_pred CCccccchhhhhhhHHHHHHHHHHHHhhHHhCCC
Q 028601 94 TPFGYTRKDVLLIGVGVTVIGYGLKSGLELFGVD 127 (207)
Q Consensus 94 ~pFgMtR~DVI~IGlgvfllGg~lY~gLq~~GlD 127 (207)
.|-.+++.||+.||-|+. |..+-+.|...|++
T Consensus 17 ~~~~~~~~dV~IVGaG~a--Gl~~A~~La~~G~~ 48 (407)
T 3rp8_A 17 NLYFQGHMKAIVIGAGIG--GLSAAVALKQSGID 48 (407)
T ss_dssp ------CCEEEEECCSHH--HHHHHHHHHHTTCE
T ss_pred cccCCCCCEEEEECCCHH--HHHHHHHHHhCCCC
Confidence 334445679999999984 44455556666764
No 76
>1utg_A Uteroglobin; steroid binding; 1.34A {Oryctolagus cuniculus} SCOP: a.101.1.1 PDB: 2utg_A
Probab=30.88 E-value=54 Score=22.73 Aligned_cols=35 Identities=26% Similarity=0.534 Sum_probs=27.6
Q ss_pred cHHHHHHHHH--------HHHHHHHHhcCCHHHHHHHHHHHHH
Q 028601 161 TYAQQLRDYE--------DKVMQKRLEGLTEAELEALIEQVEE 195 (207)
Q Consensus 161 TY~qQ~kdYE--------~avLQKRleeLtpEEle~L~aEIE~ 195 (207)
.|.++++.|. ...+.+-++.||+|.++-+..=++.
T Consensus 20 ~Y~~~l~~y~~~~~~~~A~~~lK~C~d~ls~e~~~~i~~~l~k 62 (70)
T 1utg_A 20 SYETSLKEFEPDDTMKDAGMQMKKVLDSLPQTTRENIMKLTEK 62 (70)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4999999998 4567788999999998876655544
No 77
>3iz6_M 40S ribosomal protein S18 (S13P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=30.27 E-value=17 Score=29.35 Aligned_cols=21 Identities=29% Similarity=0.469 Sum_probs=18.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 028601 175 QKRLEGLTEAELEALIEQVEE 195 (207)
Q Consensus 175 QKRleeLtpEEle~L~aEIE~ 195 (207)
.+|..+||+||+++|.+.|+.
T Consensus 53 ~~r~g~Lt~~ei~~l~~~i~~ 73 (152)
T 3iz6_M 53 NKRAGELSAEEMDRLMAVVHN 73 (152)
T ss_dssp SSBTTTSCHHHHHHHHHHHHS
T ss_pred CcEeCcCCHHHHHHHHHHHHh
Confidence 578899999999999999974
No 78
>3j20_O 30S ribosomal protein S13P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=30.19 E-value=18 Score=29.09 Aligned_cols=22 Identities=14% Similarity=0.184 Sum_probs=19.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHH
Q 028601 175 QKRLEGLTEAELEALIEQVEEE 196 (207)
Q Consensus 175 QKRleeLtpEEle~L~aEIE~E 196 (207)
.+|..+||+||+++|.+.|+..
T Consensus 48 ~~r~g~Lt~~ei~~i~~~i~~~ 69 (148)
T 3j20_O 48 FMKAGYLTDEQVKKIEEILADP 69 (148)
T ss_dssp SSCTTBCCHHHHHHHHHHHHCH
T ss_pred CceeccCCHHHHHHHHHHHhcc
Confidence 5788999999999999999753
No 79
>3ngm_A Extracellular lipase; secret lipase, hydrolase; 2.80A {Gibberella zeae}
Probab=30.03 E-value=30 Score=29.89 Aligned_cols=39 Identities=21% Similarity=0.230 Sum_probs=18.1
Q ss_pred HHHHHHHHHHH--HHHHhcCCHHHHHHHHHHHHHHHhcccc
Q 028601 164 QQLRDYEDKVM--QKRLEGLTEAELEALIEQVEEEKRRLAS 202 (207)
Q Consensus 164 qQ~kdYE~avL--QKRleeLtpEEle~L~aEIE~Ek~~~~~ 202 (207)
.++|+|+.+.= -+.-++|+||||++-+.+.-++.++-..
T Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (319)
T 3ngm_A 272 ISWRRYRSAKRESISERATMTDAELEKKLNSYVEMDKEYIK 312 (319)
T ss_dssp ------------------CCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccceecccccccccccccCCCcHHHHHHHHHHHHHHHHHHh
Confidence 45788884432 2234689999999988888776655433
No 80
>3od8_A Poly [ADP-ribose] polymerase 1; protein-DNA complex, PARP zinc finger, DNA binding protein-D complex; 2.40A {Homo sapiens} PDB: 3oda_A 4dqy_A*
Probab=29.87 E-value=24 Score=27.17 Aligned_cols=20 Identities=10% Similarity=0.121 Sum_probs=18.1
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 028601 176 KRLEGLTEAELEALIEQVEE 195 (207)
Q Consensus 176 KRleeLtpEEle~L~aEIE~ 195 (207)
+-|++|.+|+++++.+.||+
T Consensus 92 ~Gfd~L~~eDQekIkk~ie~ 111 (116)
T 3od8_A 92 DGFSELRWDDQQKVKKTAEA 111 (116)
T ss_dssp ETGGGSCHHHHHHHHHHHHC
T ss_pred cChHHCCHHHHHHHHHHHHc
Confidence 67899999999999999975
No 81
>3odc_A Poly [ADP-ribose] polymerase 1; protein-DNA complex, PARP zinc finger, DNA binding protein-D complex; 2.80A {Homo sapiens} PDB: 3ode_A 2l31_A
Probab=29.82 E-value=13 Score=28.16 Aligned_cols=21 Identities=29% Similarity=0.260 Sum_probs=15.9
Q ss_pred HhcCCHHHHHHHHHHHHHHHh
Q 028601 178 LEGLTEAELEALIEQVEEEKR 198 (207)
Q Consensus 178 leeLtpEEle~L~aEIE~Ek~ 198 (207)
|++|++|+++++.+.|++.+.
T Consensus 81 f~~L~~eDQe~Ikk~i~~~~~ 101 (111)
T 3odc_A 81 FSLLATEDKEALKKQLPGVKS 101 (111)
T ss_dssp GGGSCHHHHHHHHHHSCC---
T ss_pred hHHCCHHHHHHHHHHHHhhcc
Confidence 789999999999998876543
No 82
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=29.01 E-value=97 Score=22.54 Aligned_cols=28 Identities=11% Similarity=0.305 Sum_probs=21.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 028601 170 EDKVMQKRLEGLTEAELEALIEQVEEEK 197 (207)
Q Consensus 170 E~avLQKRleeLtpEEle~L~aEIE~Ek 197 (207)
+..+.+.....+++||+.+|.+|.+++-
T Consensus 99 ~~~~~~~~~~~~~~eel~~l~~~~~~~~ 126 (134)
T 4ham_A 99 KETILDLVYLGVNIEEIHKLADEYSQDI 126 (134)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 3455556666789999999998887753
No 83
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=28.87 E-value=76 Score=23.39 Aligned_cols=102 Identities=14% Similarity=0.021 Sum_probs=58.8
Q ss_pred CCccccchhhhhhhHHHHHHH----HHHHHhhHHhCCCcccchhHHHHHHHhhhhhheee-----eeeeeeecCCccHHH
Q 028601 94 TPFGYTRKDVLLIGVGVTVIG----YGLKSGLELFGVDPLQAGNVVEVIVVLGLTLGWVS-----TYIFRVSNKEMTYAQ 164 (207)
Q Consensus 94 ~pFgMtR~DVI~IGlgvfllG----g~lY~gLq~~GlD~~~AGiwsQ~lLVlGlvVgWv~-----SYLfRV~tk~MTY~q 164 (207)
.++|++..+..++-.+. --| .-.--+-..+|++.....-...-+-=-|++.--.. .+.++.--+-..+.+
T Consensus 63 ~~~glt~~~~~iL~~L~-~~~~~~~~t~~eLa~~l~is~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~~~LT~~G~~~~~ 141 (181)
T 2fbk_A 63 AASGLNAAGWDLLLTLY-RSAPPEGLRPTELSALAAISGPSTSNRIVRLLEKGLIERREDERDRRSASIRLTPQGRALVT 141 (181)
T ss_dssp HTTTCCHHHHHHHHHHH-HHCCSSCBCHHHHHHHCSCCSGGGSSHHHHHHHHTSEECCC-------CCBEECHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHH-HcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCcCEEecCCCCCCCeeEEEECHHHHHHHH
Confidence 35666666554433322 122 11222345788888877777777776665211100 112233333344555
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 028601 165 QLRDYEDKVMQKRLEGLTEAELEALIEQVEEE 196 (207)
Q Consensus 165 Q~kdYE~avLQKRleeLtpEEle~L~aEIE~E 196 (207)
+...--.+.+++-++.|++||++.|.+-+++-
T Consensus 142 ~~~~~~~~~~~~~~~~l~~~e~~~l~~~L~~l 173 (181)
T 2fbk_A 142 HLLPAHLATTQRVLAPLSAQEQRTLEELAGRM 173 (181)
T ss_dssp HHHHHHHHHHHHHHTTSCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 55555577788889999999999988877663
No 84
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=28.60 E-value=12 Score=28.18 Aligned_cols=19 Identities=16% Similarity=0.214 Sum_probs=0.0
Q ss_pred HHHHHhcCCHHHHHHHHHH
Q 028601 174 MQKRLEGLTEAELEALIEQ 192 (207)
Q Consensus 174 LQKRleeLtpEEle~L~aE 192 (207)
+.++.++++.||++.+.+-
T Consensus 115 ~~~~~~~l~~~~i~~l~~~ 133 (137)
T 4h33_A 115 LISETPDLTKEEIAVVEQF 133 (137)
T ss_dssp -------------------
T ss_pred HHHhhhhccHHHHHHHHHH
Confidence 3445566777776655443
No 85
>2e0t_A Dual specificity phosphatase 26; conserved hypothetical protein, structural genomics, NPPSFA, project on protein structural and functional analyses; 1.67A {Homo sapiens}
Probab=28.38 E-value=19 Score=25.91 Aligned_cols=24 Identities=17% Similarity=0.120 Sum_probs=18.5
Q ss_pred eeecCCccHHHHHHHHHHHHHHHH
Q 028601 154 RVSNKEMTYAQQLRDYEDKVMQKR 177 (207)
Q Consensus 154 RV~tk~MTY~qQ~kdYE~avLQKR 177 (207)
|-+.-++.|++|+++||+...++|
T Consensus 126 R~i~pn~~f~~qL~~~e~~l~~~~ 149 (151)
T 2e0t_A 126 RGIIPNRGFLRQLLALDRRLRQGL 149 (151)
T ss_dssp SCSCCCHHHHHHHHHHHHHHHHCC
T ss_pred CCCCCCHHHHHHHHHHHHHHHhhc
Confidence 434678999999999998766554
No 86
>2jns_A Bromodomain-containing protein 4; ET-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=28.31 E-value=70 Score=22.93 Aligned_cols=34 Identities=15% Similarity=0.364 Sum_probs=27.0
Q ss_pred cCCccHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 028601 157 NKEMTYAQQLRDYEDKVMQKRLEGLTEAELEALIEQVEEE 196 (207)
Q Consensus 157 tk~MTY~qQ~kdYE~avLQKRleeLtpEEle~L~aEIE~E 196 (207)
.+.|||.+ ...|.+.+..|+++.+++...=|.+.
T Consensus 15 ~~~mT~eE------K~~Ls~~I~~Lp~e~L~~Vi~II~~~ 48 (90)
T 2jns_A 15 CKPMSYEE------KRQLSLDINKLPGEKLGRVVHIIQSR 48 (90)
T ss_dssp CCCCCHHH------HHHHHHHHTTSCHHHHTTHHHHHHTT
T ss_pred CCCCCHHH------HHHHHHHHHHcCHHHHHHHHHHHHhc
Confidence 36799875 45799999999999999877666553
No 87
>1wz6_A HMG-box transcription factor BBX; bobby SOX homolog, HMG_BOX domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative; NMR {Mus musculus}
Probab=28.04 E-value=78 Score=21.26 Aligned_cols=29 Identities=17% Similarity=0.178 Sum_probs=23.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 028601 171 DKVMQKRLEGLTEAELEALIEQVEEEKRR 199 (207)
Q Consensus 171 ~avLQKRleeLtpEEle~L~aEIE~Ek~~ 199 (207)
...|-++..+||++|.+.-.++-++++.+
T Consensus 39 sk~lg~~Wk~ls~~eK~~y~~~A~~~k~~ 67 (82)
T 1wz6_A 39 TKILADWWAVLDPKEKQKYTDMAKEYKDA 67 (82)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCCHHHHHHHHHHHHHHHHH
Confidence 34677888999999999998887776654
No 88
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=28.00 E-value=63 Score=22.37 Aligned_cols=98 Identities=13% Similarity=0.169 Sum_probs=50.1
Q ss_pred CccccchhhhhhhHHHHHHHHH-HHHhhHHhCCCcccchhHHHHHHHhhhhhheeee------eeeeeecCCccHHHHHH
Q 028601 95 PFGYTRKDVLLIGVGVTVIGYG-LKSGLELFGVDPLQAGNVVEVIVVLGLTLGWVST------YIFRVSNKEMTYAQQLR 167 (207)
Q Consensus 95 pFgMtR~DVI~IGlgvfllGg~-lY~gLq~~GlD~~~AGiwsQ~lLVlGlvVgWv~S------YLfRV~tk~MTY~qQ~k 167 (207)
++|++..+..++....- -|.. .--.-..+|++.....-...-+.=-|+ |--... +.+..-.+-..+.++..
T Consensus 32 ~~~l~~~~~~iL~~l~~-~~~~~~~ela~~l~~~~~tvs~~l~~L~~~gl-i~r~~~~~d~R~~~~~lT~~G~~~~~~~~ 109 (142)
T 2bv6_A 32 KYNLTYPQFLVLTILWD-ESPVNVKKVVTELALDTGTVSPLLKRMEQVDL-IKRERSEVDQREVFIHLTDKSETIRPELS 109 (142)
T ss_dssp HHTCCHHHHHHHHHHHH-SSEEEHHHHHHHTTCCTTTHHHHHHHHHHTTS-EEEEECSSSTTCEEEEECHHHHHHHHHHT
T ss_pred hcCCCHHHHHHHHHHHH-cCCcCHHHHHHHHCCChhhHHHHHHHHHHCCC-EEeecCCCCcceEEEEEChHHHHHHHHHH
Confidence 56666655544333221 1211 112244778877766666666555554 211111 12222222233444444
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 028601 168 DYEDKVMQKRLEGLTEAELEALIEQVEEE 196 (207)
Q Consensus 168 dYE~avLQKRleeLtpEEle~L~aEIE~E 196 (207)
...++ +.+.+ .|+++|++.|.+-+++-
T Consensus 110 ~~~~~-~~~~~-~l~~~e~~~l~~~l~~~ 136 (142)
T 2bv6_A 110 NASDK-VASAS-SLSQDEVKELNRLLGKV 136 (142)
T ss_dssp THHHH-HHHHT-TCCHHHHHHHHHHHHHH
T ss_pred HHHHH-HHHHh-CCCHHHHHHHHHHHHHH
Confidence 44344 34556 99999999998877653
No 89
>1hry_A Human SRY; DNA, DNA-binding protein, DNA binding protein/DNA complex; HET: DNA; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1hrz_A*
Probab=27.87 E-value=81 Score=20.72 Aligned_cols=29 Identities=21% Similarity=0.188 Sum_probs=22.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 028601 171 DKVMQKRLEGLTEAELEALIEQVEEEKRR 199 (207)
Q Consensus 171 ~avLQKRleeLtpEEle~L~aEIE~Ek~~ 199 (207)
...|-++..+||+||.+.-.++-++++.+
T Consensus 36 sk~lg~~Wk~ls~~eK~~y~~~A~~~k~~ 64 (76)
T 1hry_A 36 SKQLGYQWKMLTEAEKWPFFQEAQKLQAM 64 (76)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHhCCHHHHHHHHHHHHHHHHH
Confidence 45677888999999999888777766543
No 90
>2ki0_A DS119; beta-alpha-beta, de novo protein; NMR {Synthetic}
Probab=27.63 E-value=40 Score=21.69 Aligned_cols=15 Identities=33% Similarity=0.448 Sum_probs=12.1
Q ss_pred CHHHHHHHHHHHHHH
Q 028601 182 TEAELEALIEQVEEE 196 (207)
Q Consensus 182 tpEEle~L~aEIE~E 196 (207)
+|||+.+|.+|-...
T Consensus 13 tpeelkklkeeakka 27 (36)
T 2ki0_A 13 TPEELKKLKEEAKKA 27 (36)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhc
Confidence 799999998876543
No 91
>3zs9_C Golgi to ER traffic protein 2; hydrolase-transport protein complex, membrane protein, targe factor; HET: ADP; 2.10A {Saccharomyces cerevisiae}
Probab=27.38 E-value=51 Score=21.64 Aligned_cols=20 Identities=35% Similarity=0.391 Sum_probs=15.7
Q ss_pred hcCCHHHHHHHHHHHHHHHh
Q 028601 179 EGLTEAELEALIEQVEEEKR 198 (207)
Q Consensus 179 eeLtpEEle~L~aEIE~Ek~ 198 (207)
.|||++|+.+|..|--+.|-
T Consensus 2 sels~~ekaRlrRERR~aKi 21 (38)
T 3zs9_C 2 SELTEAEKRRLLRERRQKKF 21 (38)
T ss_dssp --CCHHHHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHHHH
Confidence 48999999999999877664
No 92
>1q5q_H Proteasome beta-type subunit 1; proteasome assembly, Pro-peptide, inter-subunit contacts, RH erythropolis, hydrolase; 2.60A {Rhodococcus erythropolis} SCOP: d.153.1.4
Probab=27.35 E-value=32 Score=27.56 Aligned_cols=24 Identities=13% Similarity=0.181 Sum_probs=19.5
Q ss_pred HhcCCHHHHHHHHHHHHHHHhccc
Q 028601 178 LEGLTEAELEALIEQVEEEKRRLA 201 (207)
Q Consensus 178 leeLtpEEle~L~aEIE~Ek~~~~ 201 (207)
+..++++|++.+.+++++++.+.+
T Consensus 202 ~~~l~~~ei~~~~~~~~~~~~~~~ 225 (235)
T 1q5q_H 202 AVHVSEETTSELARRIVAERTEQG 225 (235)
T ss_dssp EEECCHHHHHHHHHHHHHHHHTC-
T ss_pred eEEeCHHHHHHHHHHHHHHHhhCC
Confidence 567999999999999988776544
No 93
>1vq8_V 50S ribosomal protein L29P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: a.2.2.1 PDB: 1vq4_V* 1vq5_V* 1vq6_V* 1vq7_V* 1s72_V* 1vq9_V* 1vqk_V* 1vql_V* 1vqm_V* 1vqn_V* 1vqo_V* 1vqp_V* 1yhq_V* 1yi2_V* 1yij_V* 1yit_V* 1yj9_V* 1yjn_V* 1yjw_V* 2otj_V* ...
Probab=27.34 E-value=42 Score=23.60 Aligned_cols=21 Identities=29% Similarity=0.419 Sum_probs=16.2
Q ss_pred HHhcCCHHHHHHHHHHHHHHH
Q 028601 177 RLEGLTEAELEALIEQVEEEK 197 (207)
Q Consensus 177 RleeLtpEEle~L~aEIE~Ek 197 (207)
-|.+||++||.+.+.|+.+|-
T Consensus 8 elr~~s~~EL~~~l~elk~EL 28 (71)
T 1vq8_V 8 EIRDMTPAEREAELDDLKTEL 28 (71)
T ss_dssp HHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHH
Confidence 467889999888888877653
No 94
>3fgh_A Transcription factor A, mitochondrial; HMG domain, mitochondrial transcription, activator, DNA- binding, mitochondrion, phosphoprotein; 1.35A {Homo sapiens}
Probab=27.01 E-value=88 Score=20.17 Aligned_cols=28 Identities=21% Similarity=0.399 Sum_probs=21.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHh
Q 028601 171 DKVMQKRLEGLTEAELEALIEQVEEEKR 198 (207)
Q Consensus 171 ~avLQKRleeLtpEEle~L~aEIE~Ek~ 198 (207)
...+-++..+||++|.+.-.+.-++++.
T Consensus 30 ~k~lg~~Wk~ls~~eK~~y~~~A~~~k~ 57 (67)
T 3fgh_A 30 LKTVKENWKNLSDSEKELYIQHAKEDET 57 (67)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhCCHHHHHHHHHHHHHHHH
Confidence 4567778899999999988877666554
No 95
>2zjr_V 50S ribosomal protein L29; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: a.2.2.1 PDB: 1nwx_W* 1nwy_W* 1sm1_W* 1xbp_W* 2aar_W 2d3o_W 2zjp_V* 2zjq_V 1nkw_W 3cf5_V* 3dll_V* 3pio_V* 3pip_V* 1pnu_W 1pny_W 1vor_Y 1vou_Y 1vow_Y 1voy_Y 1vp0_Y
Probab=26.96 E-value=34 Score=23.77 Aligned_cols=19 Identities=16% Similarity=0.356 Sum_probs=15.5
Q ss_pred HhcCCHHHHHHHHHHHHHH
Q 028601 178 LEGLTEAELEALIEQVEEE 196 (207)
Q Consensus 178 leeLtpEEle~L~aEIE~E 196 (207)
|.+||+|||.+.+.|+.+|
T Consensus 6 lr~~s~~EL~~~l~elk~E 24 (67)
T 2zjr_V 6 MRNLQATDFAKEIDARKKE 24 (67)
T ss_dssp TTTSCHHHHHHHHHTHHHH
T ss_pred HHhCCHHHHHHHHHHHHHH
Confidence 6689999998888887765
No 96
>3gkx_A Putative ARSC family related protein; ARSC family protein, structural genomi 2, protein structure initiative; 2.20A {Bacteroides fragilis} SCOP: c.47.1.0
Probab=26.86 E-value=31 Score=25.37 Aligned_cols=25 Identities=28% Similarity=0.409 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHH
Q 028601 168 DYEDKVMQKRLEGLTEAELEALIEQ 192 (207)
Q Consensus 168 dYE~avLQKRleeLtpEEle~L~aE 192 (207)
.|++--+..|+++|+++|+-+++.+
T Consensus 67 ~~k~l~l~~k~~~ls~~~~~~lm~~ 91 (120)
T 3gkx_A 67 VYKELKLSSKLPTMTEEEQIALLAT 91 (120)
T ss_dssp HHHHTTHHHHGGGSCHHHHHHHHTT
T ss_pred hhhhcCcchhcccCCHHHHHHHHHh
Confidence 5666677888999999999888754
No 97
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=26.60 E-value=78 Score=21.81 Aligned_cols=18 Identities=28% Similarity=0.425 Sum_probs=15.3
Q ss_pred hcCCHHHHHHHHHHHHHH
Q 028601 179 EGLTEAELEALIEQVEEE 196 (207)
Q Consensus 179 eeLtpEEle~L~aEIE~E 196 (207)
+.||+||++.|.+-+++-
T Consensus 106 ~~ls~ee~~~l~~~L~~~ 123 (126)
T 1sd4_A 106 EELNNKEIEELRDILNDI 123 (126)
T ss_dssp TCSCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhh
Confidence 589999999999888753
No 98
>3u5c_S 40S ribosomal protein S18-A, 40S ribosomal protein S17-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_M 3o30_L 3o2z_L 3u5g_S 1s1h_M 3jyv_M* 2zkq_m
Probab=26.54 E-value=17 Score=29.19 Aligned_cols=21 Identities=33% Similarity=0.556 Sum_probs=18.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 028601 175 QKRLEGLTEAELEALIEQVEE 195 (207)
Q Consensus 175 QKRleeLtpEEle~L~aEIE~ 195 (207)
.+|..+||+||+++|.+.|+.
T Consensus 55 ~~r~g~Lt~~ei~~l~~~i~~ 75 (146)
T 3u5c_S 55 HKRAGELTQEELERIVQIMQN 75 (146)
T ss_dssp TSCSSSCCHHHHHHHHHHHTC
T ss_pred CceeccCCHHHHHHHHHHHHh
Confidence 678899999999999999964
No 99
>2cs1_A PMS1 protein homolog 1; DNA mismatch repair protein PMS1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.54 E-value=1.1e+02 Score=21.18 Aligned_cols=27 Identities=15% Similarity=0.133 Sum_probs=20.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 028601 171 DKVMQKRLEGLTEAELEALIEQVEEEK 197 (207)
Q Consensus 171 ~avLQKRleeLtpEEle~L~aEIE~Ek 197 (207)
...|-++..+||++|.+.-.++-++++
T Consensus 39 sk~lg~~Wk~ls~eeK~~y~~~A~~~k 65 (92)
T 2cs1_A 39 TLQIEELWKTLSEEEKLKYEEKATKDL 65 (92)
T ss_dssp HHHHHHHHHSSCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 345777889999999988877665543
No 100
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens} SCOP: a.21.1.0
Probab=25.98 E-value=89 Score=20.04 Aligned_cols=29 Identities=28% Similarity=0.384 Sum_probs=22.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 028601 171 DKVMQKRLEGLTEAELEALIEQVEEEKRR 199 (207)
Q Consensus 171 ~avLQKRleeLtpEEle~L~aEIE~Ek~~ 199 (207)
...+-++..+||++|.+.-.++-++++.+
T Consensus 34 sk~lg~~Wk~ls~~eK~~y~~~A~~~k~~ 62 (71)
T 4a3n_A 34 SKMLGKSWKALTLAEKRPFVEEAERLRVQ 62 (71)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 34567788899999999988877766543
No 101
>2xzm_M RPS18E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_M
Probab=25.79 E-value=21 Score=28.85 Aligned_cols=21 Identities=19% Similarity=0.291 Sum_probs=18.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 028601 175 QKRLEGLTEAELEALIEQVEE 195 (207)
Q Consensus 175 QKRleeLtpEEle~L~aEIE~ 195 (207)
.+|..+||+||+++|.+.|+.
T Consensus 55 ~~r~~~Lt~~ei~~l~~~i~~ 75 (155)
T 2xzm_M 55 NARAGLLTEDQCNKITDLIAD 75 (155)
T ss_dssp SSCSSCSCHHHHHHHHHHHHS
T ss_pred ccccccCCHHHHHHHHHHHhC
Confidence 458899999999999999975
No 102
>2eqz_A High mobility group protein B3; HMG-box domain, mobility group protein 2A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.79 E-value=87 Score=21.35 Aligned_cols=27 Identities=19% Similarity=0.206 Sum_probs=19.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHh
Q 028601 172 KVMQKRLEGLTEAELEALIEQVEEEKR 198 (207)
Q Consensus 172 avLQKRleeLtpEEle~L~aEIE~Ek~ 198 (207)
..|-++..+||++|.+.-.++-++++.
T Consensus 50 k~lg~~Wk~ls~~eK~~y~~~A~~~k~ 76 (86)
T 2eqz_A 50 KKCSERWKTMSGKEKSKFDEMAKADKV 76 (86)
T ss_dssp HHHHHHHHSSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 356677889999998887776666554
No 103
>1ccd_A Clara cell 17 KD protein; phospholipase A2 inhibitor; 3.00A {Rattus rattus} SCOP: a.101.1.1
Probab=25.73 E-value=52 Score=23.34 Aligned_cols=35 Identities=11% Similarity=0.359 Sum_probs=27.6
Q ss_pred cHHHHHHHHH--------HHHHHHHHhcCCHHHHHHHHHHHHH
Q 028601 161 TYAQQLRDYE--------DKVMQKRLEGLTEAELEALIEQVEE 195 (207)
Q Consensus 161 TY~qQ~kdYE--------~avLQKRleeLtpEEle~L~aEIE~ 195 (207)
.|.++++.|. ...+.+-++.||+|.++-+..=++.
T Consensus 22 ~Y~~~l~~y~~~~~a~eA~~~lK~C~D~ls~e~r~~i~~~l~k 64 (77)
T 1ccd_A 22 NYEAALKPFNPASDLQNAGTQLKRLVDTLPQETRINIVKLTEK 64 (77)
T ss_dssp HHHHHHTTTCCCHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4999999998 4567788999999998876655544
No 104
>3j21_W 50S ribosomal protein L29P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=25.71 E-value=54 Score=23.13 Aligned_cols=21 Identities=14% Similarity=0.302 Sum_probs=16.6
Q ss_pred HHhcCCHHHHHHHHHHHHHHH
Q 028601 177 RLEGLTEAELEALIEQVEEEK 197 (207)
Q Consensus 177 RleeLtpEEle~L~aEIE~Ek 197 (207)
-+.+||+|||.+.+.|+.+|-
T Consensus 5 elr~~s~~EL~~~L~elk~EL 25 (72)
T 3j21_W 5 EIREMSIEEIDAKIRELRLQL 25 (72)
T ss_dssp HHHHSCHHHHHHHHHHHHHHH
T ss_pred HHhhCCHHHHHHHHHHHHHHH
Confidence 467899999988888887653
No 105
>3r8n_M 30S ribosomal protein S13; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_M* 3j18_M 3oaq_M 3ofa_M 3ofx_M 3ofo_M 3r8o_M 4a2i_M 4gd1_M 4gd2_M 3i1m_M 1vs7_M* 3e1a_F 3e1c_F 1vs5_M 3i1o_M 3i1q_M 3i1s_M 3i1z_M 3i21_M ...
Probab=25.69 E-value=20 Score=27.49 Aligned_cols=19 Identities=21% Similarity=0.543 Sum_probs=17.0
Q ss_pred HHHHhcCCHHHHHHHHHHH
Q 028601 175 QKRLEGLTEAELEALIEQV 193 (207)
Q Consensus 175 QKRleeLtpEEle~L~aEI 193 (207)
.+|..+||+||+++|.+.|
T Consensus 41 ~~r~~~Lt~~ei~~l~~~i 59 (114)
T 3r8n_M 41 DVKISELSEGQIDTLRDEV 59 (114)
T ss_dssp TCCSTTCCHHHHHHHHHHH
T ss_pred ccCcccCCHHHHHHHHHHH
Confidence 4688999999999999988
No 106
>3v2d_2 50S ribosomal protein L29; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_W 1vsa_W 2j03_2 2jl6_2 2jl8_2 2v47_2 2v49_2 2wdi_2 2wdj_2 2wdl_2 2wdn_2 2wh2_2 2wh4_2 2wrj_2 2wrl_2 2wro_2 2wrr_2 2x9s_2 2x9u_2 2xg0_2 ...
Probab=25.67 E-value=54 Score=23.12 Aligned_cols=22 Identities=27% Similarity=0.398 Sum_probs=17.4
Q ss_pred HHHhcCCHHHHHHHHHHHHHHH
Q 028601 176 KRLEGLTEAELEALIEQVEEEK 197 (207)
Q Consensus 176 KRleeLtpEEle~L~aEIE~Ek 197 (207)
+-+.+||+|||.+.+.|+.+|-
T Consensus 11 ~elr~~s~eEL~~~L~elk~EL 32 (72)
T 3v2d_2 11 EEARKLSPVELEKLVREKKREL 32 (72)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHH
Confidence 4577899999988888887753
No 107
>1ryp_D 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_C* 1g65_C 2f16_C* 2fak_C* 2fny_C* 2gpl_C* 3d29_C* 3dy3_C* 3dy4_C* 3e47_C* 3gpj_C* 3gpt_C* 3gpw_C* 3hye_C* 3mg0_C* 3mg4_C* 3oeu_C* 3oev_C* 3okj_C* 3shj_C* ...
Probab=25.58 E-value=29 Score=27.74 Aligned_cols=22 Identities=27% Similarity=0.561 Sum_probs=19.0
Q ss_pred HhcCCHHHHHHHHHHHHHHHhc
Q 028601 178 LEGLTEAELEALIEQVEEEKRR 199 (207)
Q Consensus 178 leeLtpEEle~L~aEIE~Ek~~ 199 (207)
+..++++|++.+.++++++++.
T Consensus 219 ~~~l~~~ei~~~~~~~~~~~~~ 240 (241)
T 1ryp_D 219 IVALSSEEINQYVTQIEQEKQE 240 (241)
T ss_dssp EEECCHHHHHHHHHHHTHHHHC
T ss_pred EEECCHHHHHHHHHHHhhhhcc
Confidence 7789999999999999877653
No 108
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=25.06 E-value=97 Score=21.23 Aligned_cols=21 Identities=24% Similarity=0.371 Sum_probs=15.9
Q ss_pred HHHHH--hcCCHHHHHHHHHHHH
Q 028601 174 MQKRL--EGLTEAELEALIEQVE 194 (207)
Q Consensus 174 LQKRl--eeLtpEEle~L~aEIE 194 (207)
+..-+ +.||+||++.|.+-++
T Consensus 99 ~~~~~~~~~ls~ee~~~l~~~L~ 121 (123)
T 1okr_A 99 VLNFVEKEDLSQDEIEELRNILN 121 (123)
T ss_dssp HHHHHHHSCCCHHHHHHHHHHHT
T ss_pred HHHHHhCCCCCHHHHHHHHHHHh
Confidence 33445 8999999999987653
No 109
>3r8s_Y 50S ribosomal protein L29; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_W 1p86_W 1vs8_X 1vs6_X 2aw4_X 2awb_X 1vt2_Y 2i2v_Y 2j28_X 2i2t_Y* 2qao_X* 2qba_X* 2qbc_X* 2qbe_X 2qbg_X 2qbi_X* 2qbk_X* 2qov_X 2qox_X 2qoz_X* ...
Probab=24.90 E-value=29 Score=23.85 Aligned_cols=19 Identities=21% Similarity=0.197 Sum_probs=14.8
Q ss_pred HhcCCHHHHHHHHHHHHHH
Q 028601 178 LEGLTEAELEALIEQVEEE 196 (207)
Q Consensus 178 leeLtpEEle~L~aEIE~E 196 (207)
+.+||+|||.+.+.|+.+|
T Consensus 6 lr~~s~~EL~~~l~elk~E 24 (63)
T 3r8s_Y 6 LREKSVEELNTELLNLLRE 24 (63)
T ss_dssp TTSCHHHHHHHHHHHHTHH
T ss_pred HHhCCHHHHHHHHHHHHHH
Confidence 5678888888888777665
No 110
>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*
Probab=24.86 E-value=17 Score=30.47 Aligned_cols=26 Identities=38% Similarity=0.469 Sum_probs=19.4
Q ss_pred hhhhhhhHHHHHHHHHHHHhhHHhCCC
Q 028601 101 KDVLLIGVGVTVIGYGLKSGLELFGVD 127 (207)
Q Consensus 101 ~DVI~IGlgvfllGg~lY~gLq~~GlD 127 (207)
.||+.||-|+..|- .+|...++-|.+
T Consensus 11 ~DVvIIGaGisGLs-aA~~L~k~~G~~ 36 (513)
T 4gde_A 11 VDVLVIGAGPTGLG-AAKRLNQIDGPS 36 (513)
T ss_dssp EEEEEECCSHHHHH-HHHHHHHHCCSC
T ss_pred CCEEEECCcHHHHH-HHHHHHhhCCCC
Confidence 68999999998877 455555555765
No 111
>1gt0_D Transcription factor SOX-2; POU factors, SOX proteins; 2.6A {Mus musculus} SCOP: a.21.1.1 PDB: 2le4_A 1o4x_B
Probab=24.65 E-value=97 Score=20.60 Aligned_cols=28 Identities=18% Similarity=0.274 Sum_probs=21.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHh
Q 028601 171 DKVMQKRLEGLTEAELEALIEQVEEEKR 198 (207)
Q Consensus 171 ~avLQKRleeLtpEEle~L~aEIE~Ek~ 198 (207)
...|-++..+||+||.+.-.++-++++.
T Consensus 34 sk~lg~~Wk~ls~eeK~~y~~~A~~~k~ 61 (80)
T 1gt0_D 34 SKRLGAEWKLLSETEKRPFIDEAKRLRA 61 (80)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 3467788899999999988877776554
No 112
>1j2p_A Alpha-ring, proteasome alpha subunit; hydrolase; 2.60A {Archaeoglobus fulgidus} SCOP: d.153.1.4 PDB: 1j2q_A*
Probab=24.62 E-value=36 Score=27.34 Aligned_cols=24 Identities=25% Similarity=0.477 Sum_probs=20.1
Q ss_pred HHhcCCHHHHHHHHHHHHHHHhcc
Q 028601 177 RLEGLTEAELEALIEQVEEEKRRL 200 (207)
Q Consensus 177 RleeLtpEEle~L~aEIE~Ek~~~ 200 (207)
.+.-++|+|++.+.+++++++++.
T Consensus 220 ~~~~l~~~ei~~~~~~~~~~~~~~ 243 (246)
T 1j2p_A 220 TFKEVSPEELKPYVERANERIREL 243 (246)
T ss_dssp CCEECCHHHHHHHHHHHHHHHHHH
T ss_pred ceEECCHHHHHHHHHHHHHHHHHh
Confidence 377899999999999998877654
No 113
>2rdq_A 1-deoxypentalenic acid 11-beta hydroxylase; Fe(II ketoglutarate dependent hydroxylase...; double stranded barrel helix, dioxygenase; HET: AKG; 1.31A {Streptomyces avermitilis} PDB: 2rdn_A* 2rdr_A* 2rds_A*
Probab=24.45 E-value=14 Score=29.40 Aligned_cols=41 Identities=15% Similarity=0.170 Sum_probs=29.6
Q ss_pred eeeecCCccHHH-HHHHHHHH---HHHHHHhcCCHHHHHHHHHHHHHH
Q 028601 153 FRVSNKEMTYAQ-QLRDYEDK---VMQKRLEGLTEAELEALIEQVEEE 196 (207)
Q Consensus 153 fRV~tk~MTY~q-Q~kdYE~a---vLQKRleeLtpEEle~L~aEIE~E 196 (207)
||..+..||=.+ |++.|++. ++. +-+++||+++|.+++++.
T Consensus 11 ~~~~~~~ls~~~~~~~~f~~dGyvvl~---~~l~~e~v~~l~~~~~~~ 55 (288)
T 2rdq_A 11 YTDCTPLLGDRAALDSFYEEHGYLFLR---NVLDRDLVKTVAEQMREG 55 (288)
T ss_dssp CCCCGGGTTCHHHHHHHHHHHSEEEEC---SCSCHHHHHHHHHHHHHH
T ss_pred cccCCcccCCHHHHHHHHHhCCEEEEe---CCCCHHHHHHHHHHHHHH
Confidence 456666776554 68888754 222 468999999999999974
No 114
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=24.01 E-value=65 Score=23.35 Aligned_cols=93 Identities=16% Similarity=0.085 Sum_probs=52.6
Q ss_pred CCccccchhhhhhhHHHHHHHH-H-HHHhhHHhCCCcccchhHHHHHHHhhhhhheeeeeeeeeecC-------------
Q 028601 94 TPFGYTRKDVLLIGVGVTVIGY-G-LKSGLELFGVDPLQAGNVVEVIVVLGLTLGWVSTYIFRVSNK------------- 158 (207)
Q Consensus 94 ~pFgMtR~DVI~IGlgvfllGg-~-lY~gLq~~GlD~~~AGiwsQ~lLVlGlvVgWv~SYLfRV~tk------------- 158 (207)
.|||+|-.+.-.+.+....=++ . .--.-..+|+|.....-.+.-+-=-|+ +-|.-+.
T Consensus 29 ~~~gLt~~q~~vL~~L~~~~~~~~t~~eLa~~l~~~~~tvs~~v~~Le~~Gl--------v~r~~~~~DrR~~~l~LT~~ 100 (147)
T 4b8x_A 29 KPYGLTFARYEALVLLTFSKSGELPMSKIGERLMVHPTSVTNTVDRLVRSGL--------VAKRPNPNDGRGTLATITDK 100 (147)
T ss_dssp GGGTCCHHHHHHHHHHHTSGGGEEEHHHHHHHHTCCHHHHHHHHHHHHHTTS--------EEEEECC----CEEEEECHH
T ss_pred HHcCCCHHHHHHHHHHHHCCCCCcCHHHHHHHHCCCHHHHHHHHHHHHhCCC--------EEEeecCCcCceeEEEECHH
Confidence 4677776654333222111111 1 122345788888776666666655553 3333332
Q ss_pred CccHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 028601 159 EMTYAQQLRDYEDKVMQKRLEGLTEAELEALIEQVEE 195 (207)
Q Consensus 159 ~MTY~qQ~kdYE~avLQKRleeLtpEEle~L~aEIE~ 195 (207)
--...++.....++ +++.|+.|++||++.|.+=+++
T Consensus 101 G~~~~~~~~~~~~~-~~~~l~~l~~ee~~~l~~~L~~ 136 (147)
T 4b8x_A 101 GREVVEAATRDLMA-MDFGLGAYDAEECGEIFAMLRP 136 (147)
T ss_dssp HHHHHHHHHHHHHH-TGGGTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HHHHHhCCCHHHHHHHHHHHHH
Confidence 22344555444443 5778999999999988877765
No 115
>2lef_A LEF-1 HMG, protein (lymphoid enhancer-binding factor); LEF1, HMG, TCR-A, transcription factor; HET: DNA; NMR {Mus musculus} SCOP: a.21.1.1
Probab=23.54 E-value=1.1e+02 Score=20.73 Aligned_cols=28 Identities=18% Similarity=0.412 Sum_probs=21.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHh
Q 028601 171 DKVMQKRLEGLTEAELEALIEQVEEEKR 198 (207)
Q Consensus 171 ~avLQKRleeLtpEEle~L~aEIE~Ek~ 198 (207)
...|-++..+||+||.+.-.++-++++.
T Consensus 34 sk~lg~~Wk~ls~eeK~~y~~~A~~~k~ 61 (86)
T 2lef_A 34 NQILGRRWHALSREEQAKYYELARKERQ 61 (86)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 3567778899999999988877776554
No 116
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=23.41 E-value=80 Score=22.83 Aligned_cols=29 Identities=24% Similarity=0.389 Sum_probs=18.7
Q ss_pred CCCCCCcccc----chhhhhhhHHHHHHHHHHH
Q 028601 90 DQTETPFGYT----RKDVLLIGVGVTVIGYGLK 118 (207)
Q Consensus 90 ~~~~~pFgMt----R~DVI~IGlgvfllGg~lY 118 (207)
.++.-||-|. |+.=|.++..+|++|.++.
T Consensus 4 ~~e~dpF~YDY~tLRigGLifA~vLfi~GI~ii 36 (67)
T 2jp3_A 4 VDKGSPFYYDWESLQLGGLIFGGLLCIAGIALA 36 (67)
T ss_dssp TSTTSGGGGGGHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCCcccchHHheecchhhHHHHHHHHHHHH
Confidence 4456899983 5555666666677775443
No 117
>2e6o_A HMG box-containing protein 1; HMG-box domain, HMG-box transcription factor 1, high mobility group box transcription factor 1, structural genomics; NMR {Homo sapiens}
Probab=23.26 E-value=91 Score=21.35 Aligned_cols=27 Identities=7% Similarity=0.120 Sum_probs=21.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHh
Q 028601 172 KVMQKRLEGLTEAELEALIEQVEEEKR 198 (207)
Q Consensus 172 avLQKRleeLtpEEle~L~aEIE~Ek~ 198 (207)
..|-++..+||+||.+.-.++-++++.
T Consensus 50 k~lg~~Wk~ls~eeK~~y~~~A~~~k~ 76 (87)
T 2e6o_A 50 VILGDRWKKMKNEERRMYTLEAKALAE 76 (87)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhCCHHHHHHHHHHHHHHHH
Confidence 457778889999999888877776554
No 118
>2qe9_A Uncharacterized protein YIZA; DINB/YFIT-like putative metalloenzymes fold, structural GENO joint center for structural genomics, JCSG; HET: CIT; 1.90A {Bacillus subtilis}
Probab=23.16 E-value=79 Score=23.55 Aligned_cols=27 Identities=19% Similarity=0.110 Sum_probs=20.8
Q ss_pred cHHHHHHHHH---HHHHHHHHhcCCHHHHH
Q 028601 161 TYAQQLRDYE---DKVMQKRLEGLTEAELE 187 (207)
Q Consensus 161 TY~qQ~kdYE---~avLQKRleeLtpEEle 187 (207)
++.+++-+|- ++.+.+.++.||+|++.
T Consensus 18 ~~~~~l~~y~~w~r~~l~~~l~~L~ee~l~ 47 (178)
T 2qe9_A 18 QGMMKFFEYNWQVRDQWFTWCHQLTTEELL 47 (178)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGGGSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHh
Confidence 4556666663 67889999999999875
No 119
>1ryp_E 20S proteasome; multicatalytic proteinase, protein degradation, antigen processing, hydrolase, protease; 1.90A {Saccharomyces cerevisiae} SCOP: d.153.1.4 PDB: 1jd2_D* 1g65_D 2f16_D* 2fak_D* 2fny_D* 2gpl_D* 3d29_D* 3dy3_D* 3dy4_D* 3e47_D* 3gpj_D* 3gpt_D* 3gpw_D* 3hye_D* 3mg0_D* 3mg4_D* 3okj_D* 3shj_D* 3tdd_D* 2z5c_C ...
Probab=22.53 E-value=46 Score=26.54 Aligned_cols=22 Identities=14% Similarity=0.277 Sum_probs=18.7
Q ss_pred HhcCCHHHHHHHHHHHHHHHhc
Q 028601 178 LEGLTEAELEALIEQVEEEKRR 199 (207)
Q Consensus 178 leeLtpEEle~L~aEIE~Ek~~ 199 (207)
+.-++++|++++.++++++++.
T Consensus 220 ~~~~~~~ei~~~~~~~~~~~~~ 241 (242)
T 1ryp_E 220 FKIYDNEKTAELIKELKEKEAA 241 (242)
T ss_dssp EEECCHHHHHHHHHHHHHHHTT
T ss_pred eEECCHHHHHHHHHHHhhhhcc
Confidence 6789999999999999877643
No 120
>1qle_D Cytochrome AA3, ccytochrome C oxidase; oxidoreductase/immune system, complex (oxidoreductase/antibody), electron transport; HET: HEA PC1; 3.0A {Paracoccus denitrificans} SCOP: f.23.8.1
Probab=22.19 E-value=33 Score=22.54 Aligned_cols=14 Identities=21% Similarity=0.323 Sum_probs=12.9
Q ss_pred cCCccHHHHHHHHH
Q 028601 157 NKEMTYAQQLRDYE 170 (207)
Q Consensus 157 tk~MTY~qQ~kdYE 170 (207)
.+.|.|.+|.+.|+
T Consensus 5 hG~MD~~~hE~Ty~ 18 (43)
T 1qle_D 5 HGEMDIRHQQATFA 18 (43)
T ss_dssp TTCSCCHHHHHHHH
T ss_pred CCCCChHHHHHHHH
Confidence 47899999999998
No 121
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A {Rattus norvegicus} SCOP: c.37.1.9
Probab=21.90 E-value=1.7e+02 Score=21.81 Aligned_cols=40 Identities=18% Similarity=0.262 Sum_probs=25.5
Q ss_pred eecCCccHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 028601 155 VSNKEMTYAQQLRDYEDKVMQKRLEGLTEAELEALIEQVEEEK 197 (207)
Q Consensus 155 V~tk~MTY~qQ~kdYE~avLQKRleeLtpEEle~L~aEIE~Ek 197 (207)
++|.+++..+.++.|+... ++++.| .++++.|+.|+++.+
T Consensus 77 ~~n~~~~~~~l~~~~~~e~--~~~~~L-~~~i~~Le~el~~~R 116 (117)
T 3kin_B 77 SVNLELTAEEWKKKYEKEK--EKNKAL-KSVIQHLEVELNRWR 116 (117)
T ss_dssp CCCBCCCHHHHHHHHHHHH--HHHHHH-HHHHHHHHHHHHHHT
T ss_pred eecCcCCHHHHHHHHHHHH--HHHHHH-HHHHHHHHHHHHHhh
Confidence 5677888888888887542 233332 246666777776654
No 122
>1wgf_A Upstream binding factor 1; transcription factor, DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=21.89 E-value=96 Score=21.42 Aligned_cols=29 Identities=10% Similarity=0.170 Sum_probs=23.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 028601 171 DKVMQKRLEGLTEAELEALIEQVEEEKRR 199 (207)
Q Consensus 171 ~avLQKRleeLtpEEle~L~aEIE~Ek~~ 199 (207)
...|-++..+||+||.+.-.++-++++.+
T Consensus 52 sk~lg~~Wk~ls~eeK~~Y~~~A~~~k~~ 80 (90)
T 1wgf_A 52 TRLLARMWNDLSEKKKAKYKAREAALKAQ 80 (90)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 34677788999999999998888877654
No 123
>3jyw_X 60S ribosomal protein L35; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=21.65 E-value=43 Score=24.75 Aligned_cols=21 Identities=14% Similarity=0.272 Sum_probs=16.5
Q ss_pred HHHhcCCHHHHHHHHHHHHHH
Q 028601 176 KRLEGLTEAELEALIEQVEEE 196 (207)
Q Consensus 176 KRleeLtpEEle~L~aEIE~E 196 (207)
+-|.+||+|||.+.+.|+.+|
T Consensus 6 ~ELR~~S~eEL~~~L~eLK~E 26 (86)
T 3jyw_X 6 YELRTKSKEQLASQLVDLKKE 26 (86)
T ss_dssp HHHHTSCHHHHHHHHHHHTTT
T ss_pred HHHHhCCHHHHHHHHHHHHHH
Confidence 347789999998888887665
No 124
>3eev_A Chloramphenicol acetyltransferase; beta-helix, structural genomics, center for STR genomics of infectious diseases, csgid; 2.61A {Vibrio cholerae o1 biovar el tor} SCOP: b.81.1.3
Probab=21.18 E-value=14 Score=28.81 Aligned_cols=27 Identities=11% Similarity=0.324 Sum_probs=21.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 028601 171 DKVMQKRLEGLTEAELEALIEQVEEEK 197 (207)
Q Consensus 171 ~avLQKRleeLtpEEle~L~aEIE~Ek 197 (207)
.+.++++++.|..+++++|++.+++.+
T Consensus 184 ~~~i~~~~~~~~~~~~~~l~~~~~~~~ 210 (212)
T 3eev_A 184 ESWLKESMQSLCSSDIEGLYLNWQSKA 210 (212)
T ss_dssp HHHHHHTHHHHSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHhc
Confidence 678888888888778888888887654
No 125
>2a9u_A Ubiquitin carboxyl-terminal hydrolase 8; coil-COIL, protease, SH3-binding, thiol protease, UBL conjugation pathway, structural genomics; 2.10A {Homo sapiens} SCOP: a.118.23.1
Probab=21.10 E-value=1.2e+02 Score=23.90 Aligned_cols=13 Identities=38% Similarity=0.700 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHhc
Q 028601 168 DYEDKVMQKRLEG 180 (207)
Q Consensus 168 dYE~avLQKRlee 180 (207)
+|++++.++-+++
T Consensus 114 rYe~~e~~~~l~~ 126 (144)
T 2a9u_A 114 RYEEAEVRKKLEE 126 (144)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444443
No 126
>3u2b_C Transcription factor SOX-4; HMG domain, transcriptional regulation, transcription-DNA CO; HET: DNA; 2.40A {Mus musculus} SCOP: a.21.1.1
Probab=21.08 E-value=1.2e+02 Score=19.92 Aligned_cols=28 Identities=21% Similarity=0.297 Sum_probs=21.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHh
Q 028601 171 DKVMQKRLEGLTEAELEALIEQVEEEKR 198 (207)
Q Consensus 171 ~avLQKRleeLtpEEle~L~aEIE~Ek~ 198 (207)
...|-++..+||++|.+.-.++-++++.
T Consensus 34 sk~lg~~Wk~ls~~eK~~y~~~A~~~k~ 61 (79)
T 3u2b_C 34 SKRLGKRWKLLKDSDKIPFIQEAERLRL 61 (79)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 4456777889999999988877766554
No 127
>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}
Probab=20.88 E-value=19 Score=30.27 Aligned_cols=27 Identities=22% Similarity=0.258 Sum_probs=18.9
Q ss_pred cccchhhhhhhHHHHHHHHHHHHhhHHhC
Q 028601 97 GYTRKDVLLIGVGVTVIGYGLKSGLELFG 125 (207)
Q Consensus 97 gMtR~DVI~IGlgvfllGg~lY~gLq~~G 125 (207)
||.+.||+.||-|+..+. .-+-|...|
T Consensus 1 ~m~~~~v~IiGaG~~Gl~--~A~~L~~~g 27 (475)
T 3lov_A 1 GMSSKRLVIVGGGITGLA--AAYYAERAF 27 (475)
T ss_dssp CCCSCEEEEECCBHHHHH--HHHHHHHHC
T ss_pred CCCcccEEEECCCHHHHH--HHHHHHHhC
Confidence 688889999999986555 333344445
No 128
>3ezz_A Dual specificity protein phosphatase 4; alpha/beta, hydrolase, nucleus; 2.90A {Homo sapiens} SCOP: c.45.1.1 PDB: 1m3g_A
Probab=20.53 E-value=52 Score=23.47 Aligned_cols=20 Identities=20% Similarity=0.522 Sum_probs=16.5
Q ss_pred eecCCccHHHHHHHHHHHHH
Q 028601 155 VSNKEMTYAQQLRDYEDKVM 174 (207)
Q Consensus 155 V~tk~MTY~qQ~kdYE~avL 174 (207)
.+.-+.-|++|+++||+..+
T Consensus 124 ~~~pn~~f~~qL~~~e~~l~ 143 (144)
T 3ezz_A 124 IISPNFSFMGQLLQFESQVL 143 (144)
T ss_dssp TCCCCHHHHHHHHHHHHHHH
T ss_pred ccCCCHhHHHHHHHHHHHHh
Confidence 36778899999999997654
No 129
>1h1o_A Cytochrome C-552; electron transport, electron transfer, heme; HET: HEM; 2.13A {Thiobacillus ferrooxidans} SCOP: a.3.1.4 a.3.1.4
Probab=20.32 E-value=1.5e+02 Score=21.50 Aligned_cols=31 Identities=19% Similarity=0.345 Sum_probs=22.3
Q ss_pred HHHHHHHHH-----HHHHHHHhcCCHHHHHHHHHHH
Q 028601 163 AQQLRDYED-----KVMQKRLEGLTEAELEALIEQV 193 (207)
Q Consensus 163 ~qQ~kdYE~-----avLQKRleeLtpEEle~L~aEI 193 (207)
.+|+++|.+ ..|..--..||++|+++|.+=|
T Consensus 145 ~~~l~~~~~g~~~~~~Mp~~~~~Ls~~ei~~l~~yl 180 (183)
T 1h1o_A 145 IQQLTYFHNGTRVNTLMNQIAKNITVAQMKDVAAYL 180 (183)
T ss_dssp HHHHHHHHHTSSCCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCcchHHHHHhCCHHHHHHHHHHH
Confidence 356777765 5676555679999999987654
No 130
>1v63_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: a.21.1.1
Probab=20.25 E-value=1.2e+02 Score=21.65 Aligned_cols=14 Identities=21% Similarity=0.218 Sum_probs=8.0
Q ss_pred hcCCHHHHHHHHHH
Q 028601 179 EGLTEAELEALIEQ 192 (207)
Q Consensus 179 eeLtpEEle~L~aE 192 (207)
+.|+|++.++|.++
T Consensus 76 ~~~~~~~~~~~~~~ 89 (101)
T 1v63_A 76 KSLSPQDRAAYKEY 89 (101)
T ss_dssp HHSCTTHHHHHHHH
T ss_pred hhCCHHHHHHHHHH
Confidence 34566666665555
Done!