Query 028601
Match_columns 207
No_of_seqs 77 out of 79
Neff 2.5
Searched_HMMs 13730
Date Mon Mar 25 23:35:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028601.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/028601hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1sf9a_ b.34.15.1 (A:) Hypothe 90.1 0.1 7.3E-06 39.7 3.3 37 169-205 10-46 (118)
2 d2fgea3 d.185.1.1 (A:272-539) 88.9 0.35 2.5E-05 38.1 5.9 46 152-197 206-251 (268)
3 d1h1oa2 a.3.1.4 (A:94-183) Cyt 71.5 1.9 0.00014 29.3 3.8 37 157-193 45-87 (90)
4 d3deua1 a.4.5.28 (A:2-141) Tra 56.8 12 0.00087 25.3 5.7 97 94-195 25-132 (140)
5 d1lj9a_ a.4.5.28 (A:) Transcri 55.8 11 0.00079 26.0 5.4 101 94-195 23-129 (144)
6 d1okra_ a.4.5.39 (A:) Methicil 55.4 7.1 0.00052 26.5 4.3 45 151-195 64-119 (120)
7 d1s3ja_ a.4.5.28 (A:) Putative 55.2 8.5 0.00062 26.2 4.7 75 121-195 56-135 (143)
8 d1m70a2 a.3.1.4 (A:93-190) Cyt 53.3 5.8 0.00042 26.7 3.4 31 163-193 55-94 (98)
9 d2a61a1 a.4.5.28 (A:5-143) Tra 52.9 9.8 0.00071 25.9 4.7 97 94-195 24-130 (139)
10 d1rypd_ d.153.1.4 (D:) Proteas 52.3 2.8 0.0002 31.9 1.8 23 178-200 219-241 (241)
11 d1lnwa_ a.4.5.28 (A:) MexR rep 48.3 18 0.0013 24.7 5.5 93 94-195 30-136 (141)
12 d3broa1 a.4.5.28 (A:3-137) Tra 47.2 19 0.0014 24.0 5.5 102 94-195 23-131 (135)
13 d1ic8a2 a.35.1.1 (A:87-180) He 46.3 5 0.00036 28.9 2.2 20 177-196 2-21 (94)
14 d2g9wa1 a.4.5.39 (A:3-124) Hyp 43.3 24 0.0018 24.2 5.6 48 150-197 64-121 (122)
15 d2fbia1 a.4.5.28 (A:5-140) Pro 43.1 15 0.0011 24.7 4.4 102 94-196 24-131 (136)
16 d2fbha1 a.4.5.28 (A:8-144) Tra 42.9 23 0.0016 23.7 5.2 97 94-195 22-129 (137)
17 d1utga_ a.101.1.1 (A:) Uterogl 41.8 16 0.0012 24.8 4.2 38 161-198 20-65 (70)
18 d1fcdc1 a.3.1.4 (C:1-80) Flavo 41.7 6.7 0.00049 24.6 2.1 32 164-195 39-75 (80)
19 d1q5qh_ d.153.1.4 (H:) Proteas 41.0 6.8 0.00049 28.5 2.3 22 178-199 202-223 (224)
20 d1z91a1 a.4.5.28 (A:8-144) Org 40.6 6.9 0.0005 26.7 2.2 98 94-195 27-131 (137)
21 d1h1oa1 a.3.1.4 (A:12-93) Cyto 40.1 21 0.0016 22.0 4.4 25 173-197 52-76 (82)
22 d2uubm1 a.156.1.1 (M:2-126) Ri 39.1 5.7 0.00042 28.6 1.6 21 175-195 41-61 (125)
23 d1vqov1 a.2.2.1 (V:1-65) Ribos 38.2 13 0.00098 24.0 3.3 22 176-197 6-27 (65)
24 d1cnoa_ a.3.1.1 (A:) Cytochrom 36.8 40 0.0029 20.8 5.4 33 163-195 41-81 (86)
25 d1fcdc2 a.3.1.4 (C:81-174) Fla 35.9 18 0.0013 23.0 3.6 23 172-194 69-91 (94)
26 d1kkha1 d.14.1.5 (A:1-180) Mev 34.9 12 0.00086 26.0 2.7 47 128-200 109-155 (180)
27 d1sd4a_ a.4.5.39 (A:) Penicill 34.7 44 0.0032 22.9 5.8 49 150-198 62-121 (122)
28 d2etha1 a.4.5.28 (A:1-140) Put 33.7 44 0.0032 22.3 5.6 67 121-195 53-132 (140)
29 d1wgfa_ a.21.1.1 (A:) Nucleola 33.2 37 0.0027 21.8 4.9 29 171-199 52-80 (90)
30 d1hyea2 d.162.1.1 (A:146-313) 33.0 11 0.00081 26.5 2.3 19 180-198 142-160 (168)
31 d1v64a_ a.21.1.1 (A:) Nucleola 32.6 26 0.0019 23.5 4.2 28 171-198 45-72 (108)
32 d1q2la2 d.185.1.1 (A:733-960) 31.9 82 0.006 23.1 7.4 48 151-198 82-131 (228)
33 d2iida2 d.16.1.5 (A:320-432) L 31.1 13 0.00096 23.8 2.3 21 175-195 59-80 (113)
34 d1r73a_ a.2.2.1 (A:) Ribosomal 31.1 16 0.0011 23.7 2.6 20 178-197 6-25 (66)
35 d2gy9m1 a.156.1.1 (M:1-114) Ri 29.9 8.4 0.00061 27.2 1.2 21 175-195 41-61 (114)
36 d1t3wa_ a.236.1.1 (A:) DNA pri 29.2 37 0.0027 23.1 4.6 29 165-193 99-129 (134)
37 d1y6ja2 d.162.1.1 (A:149-317) 29.1 17 0.0012 25.7 2.8 20 180-199 144-163 (169)
38 d2gycw1 a.2.2.1 (W:1-60) Ribos 28.1 23 0.0016 22.4 3.0 23 176-198 4-26 (60)
39 d1lwma_ a.21.1.1 (A:) NHP6a {B 28.0 71 0.0052 20.6 5.8 28 171-198 52-79 (93)
40 d1a5za2 d.162.1.1 (A:164-333) 26.4 23 0.0017 24.8 3.1 15 180-194 144-158 (172)
41 d1ldna2 d.162.1.1 (A:163-330) 26.4 22 0.0016 24.6 2.9 18 180-197 143-160 (168)
42 d2bcgg1 c.3.1.3 (G:5-301) Guan 25.8 8.5 0.00062 24.9 0.5 27 99-127 4-30 (297)
43 d1io1a_ e.32.1.1 (A:) Phase 1 25.8 36 0.0026 24.5 4.1 34 166-199 33-66 (395)
44 d1e52a_ a.2.9.1 (A:) C-termina 25.8 12 0.00087 24.1 1.2 24 179-202 8-31 (56)
45 d1iruc_ d.153.1.4 (C:) Proteas 25.6 13 0.00097 28.1 1.7 24 178-201 224-247 (250)
46 d1irud_ d.153.1.4 (D:) Proteas 25.5 5.4 0.00039 30.2 -0.6 25 178-202 216-240 (243)
47 d1v63a_ a.21.1.1 (A:) Nucleola 25.3 41 0.003 21.9 4.0 23 173-195 40-62 (101)
48 d1ccda_ a.101.1.1 (A:) Clara c 25.2 27 0.0019 24.0 3.1 40 161-200 22-69 (77)
49 d1c53a_ a.3.1.1 (A:) Cytochrom 25.1 35 0.0025 20.6 3.4 23 171-193 54-76 (79)
50 d2bv6a1 a.4.5.28 (A:5-140) Tra 24.4 47 0.0034 22.2 4.3 98 94-194 28-131 (136)
51 d1yioa1 a.4.6.2 (A:131-200) Re 23.7 32 0.0023 21.6 3.1 20 171-190 3-22 (70)
52 d2e74g1 f.23.26.1 (G:9-35) Pet 23.6 35 0.0026 19.4 2.9 20 104-123 1-20 (27)
53 d2zjrv1 a.2.2.1 (V:1-66) Ribos 23.6 20 0.0015 23.1 2.1 20 178-197 6-25 (66)
54 d2j0121 a.2.2.1 (2:12-62) Ribo 23.5 17 0.0013 22.6 1.7 20 178-197 2-21 (51)
55 d2lefa_ a.21.1.1 (A:) Lymphoid 22.4 55 0.004 21.0 4.2 28 171-198 34-61 (86)
56 d1j46a_ a.21.1.1 (A:) SRY {Hum 22.3 55 0.004 20.9 4.2 28 171-198 36-63 (85)
57 d1mlda2 d.162.1.1 (A:145-313) 22.1 29 0.0021 24.3 2.9 19 180-198 139-157 (169)
58 d2fbka1 a.4.5.28 (A:8-179) Tra 20.9 36 0.0026 24.1 3.2 70 122-195 87-165 (172)
59 d1y7ta2 d.162.1.1 (A:154-332) 20.3 33 0.0024 24.1 2.9 16 180-195 144-159 (173)
No 1
>d1sf9a_ b.34.15.1 (A:) Hypothetical protein YfhH {Bacillus subtilis [TaxId: 1423]}
Probab=90.14 E-value=0.1 Score=39.70 Aligned_cols=37 Identities=24% Similarity=0.386 Sum_probs=28.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHhccccCCC
Q 028601 169 YEDKVMQKRLEGLTEAELEALIEQVEEEKRRLASGEQ 205 (207)
Q Consensus 169 YE~avLQKRleeLtpEEle~L~aEIE~Ek~~~~~~~~ 205 (207)
+..-.|+||+.+||+.||+.-.+.+.+....+.+..+
T Consensus 10 ~~~~~m~krySeMs~~EL~~EIa~L~EKaRKAEq~Gi 46 (118)
T d1sf9a_ 10 FQSNAMEKRYSQMTPHELNTEIALLSEKARKAEQHGI 46 (118)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred eecchhhHHHHhcCHHHHHHHHHHHHHHHHHHHHccC
Confidence 3466899999999999999888888776555544433
No 2
>d2fgea3 d.185.1.1 (A:272-539) Presequence protease 1, PREP1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=88.93 E-value=0.35 Score=38.14 Aligned_cols=46 Identities=24% Similarity=0.213 Sum_probs=39.4
Q ss_pred eeeeecCCccHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 028601 152 IFRVSNKEMTYAQQLRDYEDKVMQKRLEGLTEAELEALIEQVEEEK 197 (207)
Q Consensus 152 LfRV~tk~MTY~qQ~kdYE~avLQKRleeLtpEEle~L~aEIE~Ek 197 (207)
+.=++.=+..|.+++++-+++.|+++-+.|++|++++|.++.++-+
T Consensus 206 v~v~~~Ps~~~~~~~~~eek~~L~~~~~~l~~e~~~~l~~~~~~l~ 251 (268)
T d2fgea3 206 VTIEMQPDPEKATQEEVEEKNILEKVKAAMTEEDLAELARATEELK 251 (268)
T ss_dssp EEEEEEEETTHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHH
T ss_pred EEEEEecCccHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 4444556789999999999999999999999999999988887733
No 3
>d1h1oa2 a.3.1.4 (A:94-183) Cytochrome c4 {Thiobacillus ferrooxidans [TaxId: 920]}
Probab=71.53 E-value=1.9 Score=29.29 Aligned_cols=37 Identities=19% Similarity=0.369 Sum_probs=28.7
Q ss_pred cCCccHH-HHHHHHH-----HHHHHHHHhcCCHHHHHHHHHHH
Q 028601 157 NKEMTYA-QQLRDYE-----DKVMQKRLEGLTEAELEALIEQV 193 (207)
Q Consensus 157 tk~MTY~-qQ~kdYE-----~avLQKRleeLtpEEle~L~aEI 193 (207)
..+..|. +|+++|+ +.+|+.-...||++|++.|-+=+
T Consensus 45 Gq~~~Yl~~qL~~f~~g~R~~~~M~~~a~~lsd~ei~~la~Y~ 87 (90)
T d1h1oa2 45 GQRYGYIIQQLTYFHNGTRVNTLMNQIAKNITVAQMKDVAAYL 87 (90)
T ss_dssp TCCHHHHHHHHHHHHHTSSCCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHcCCcCchHHHHHHHhCCHHHHHHHHHHH
Confidence 3344444 7899998 46799999999999999987654
No 4
>d3deua1 a.4.5.28 (A:2-141) Transcriptional regulator SlyA {Salmonella typhimurium [TaxId: 90371]}
Probab=56.84 E-value=12 Score=25.26 Aligned_cols=97 Identities=13% Similarity=0.191 Sum_probs=65.9
Q ss_pred CCccccchhhhhhhHHHHHHHH-HHH-HhhHHhCCCcccchhHHHHHHHhhhhhheeee---------eeeeeecCCccH
Q 028601 94 TPFGYTRKDVLLIGVGVTVIGY-GLK-SGLELFGVDPLQAGNVVEVIVVLGLTLGWVST---------YIFRVSNKEMTY 162 (207)
Q Consensus 94 ~pFgMtR~DVI~IGlgvfllGg-~lY-~gLq~~GlD~~~AGiwsQ~lLVlGlvVgWv~S---------YLfRV~tk~MTY 162 (207)
.|||+|..+...+....- .+. .-- -.-+.+++|.....-...-+.=-| ||.. ++.+.--+-..+
T Consensus 25 ~~~glt~~~~~~L~~l~~-~~~~~t~~~la~~l~i~~~~vs~~l~~L~~~g----lI~~~~~~~D~R~~~l~lT~~G~~~ 99 (140)
T d3deua1 25 KPLELTQTHWVTLHNIHQ-LPPDQSQIQLAKAIGIEQPSLVRTLDQLEDKG----LISRQTCASDRRAKRIKLTEKAEPL 99 (140)
T ss_dssp TTTTCCHHHHHHHHHHHH-SCSSEEHHHHHHHHTSCHHHHHHHHHHHHHTT----SEEEC--------CEEEECGGGHHH
T ss_pred HHcCCCHHHHHHHHHHHH-cCCCccHHHHHHHHCCCHhHHHHHHHHHHhCC----CEEecccCCCCCceeeEECHHHHHH
Confidence 478888877665544321 122 111 234577888777666555555444 4532 356666677889
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 028601 163 AQQLRDYEDKVMQKRLEGLTEAELEALIEQVEE 195 (207)
Q Consensus 163 ~qQ~kdYE~avLQKRleeLtpEEle~L~aEIE~ 195 (207)
.+|....-.+..++-++.|+|||++.+.+-+++
T Consensus 100 ~~~~~~~~~~~~~~~~~~l~~ee~~~~~~~L~~ 132 (140)
T d3deua1 100 IAEMEEVIHKTRGEILAGISSEEIELLIKLIAK 132 (140)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999888776654
No 5
>d1lj9a_ a.4.5.28 (A:) Transcriptional regulator SlyA {Enterococcus faecalis [TaxId: 1351]}
Probab=55.76 E-value=11 Score=26.05 Aligned_cols=101 Identities=17% Similarity=0.106 Sum_probs=65.6
Q ss_pred CCccccchhhhhhhHHHHHHHHHH-HHhhHHhCCCcccchhHHHHHHHhhhhhheee-----eeeeeeecCCccHHHHHH
Q 028601 94 TPFGYTRKDVLLIGVGVTVIGYGL-KSGLELFGVDPLQAGNVVEVIVVLGLTLGWVS-----TYIFRVSNKEMTYAQQLR 167 (207)
Q Consensus 94 ~pFgMtR~DVI~IGlgvfllGg~l-Y~gLq~~GlD~~~AGiwsQ~lLVlGlvVgWv~-----SYLfRV~tk~MTY~qQ~k 167 (207)
.+||.|......+-... --++.- --.-..+|+++....-...-+.--|++.-... +.....--+-..+.++..
T Consensus 23 ~~~~lt~~q~~iL~~i~-~~~~~t~~~la~~l~i~~~tvs~~l~~L~~~glI~r~~~~~D~R~~~l~LT~~G~~~~~~~~ 101 (144)
T d1lj9a_ 23 KELSLTRGQYLYLVRVC-ENPGIIQEKIAELIKVDRTTAARAIKRLEEQGFIYRQEDASNKKIKRIYATEKGKNVYPIIV 101 (144)
T ss_dssp GGGTCTTTHHHHHHHHH-HSTTEEHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHH-hCCCCCHHHHHHHHCccHhhHHHHHHHHHhhhcccccCCCCCCCccccccCHHHHHHHHHHH
Confidence 56788777766553332 122221 12345889998888888888877776333332 123334445566777777
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 028601 168 DYEDKVMQKRLEGLTEAELEALIEQVEE 195 (207)
Q Consensus 168 dYE~avLQKRleeLtpEEle~L~aEIE~ 195 (207)
.-..+..++=|+.++|||++.+..-+++
T Consensus 102 ~~~~~~~~~~~~~l~~ee~~~l~~~L~~ 129 (144)
T d1lj9a_ 102 RENQHSNQVALQGLSEVEISQLADYLVR 129 (144)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 7778888899999999999988766654
No 6
>d1okra_ a.4.5.39 (A:) Methicillin resistance regulatory protein MecI {Staphylococcus aureus [TaxId: 1280]}
Probab=55.44 E-value=7.1 Score=26.54 Aligned_cols=45 Identities=13% Similarity=0.248 Sum_probs=26.4
Q ss_pred eeeeeecCCccHHHHHHH-HH--------HHHHHHHH--hcCCHHHHHHHHHHHHH
Q 028601 151 YIFRVSNKEMTYAQQLRD-YE--------DKVMQKRL--EGLTEAELEALIEQVEE 195 (207)
Q Consensus 151 YLfRV~tk~MTY~qQ~kd-YE--------~avLQKRl--eeLtpEEle~L~aEIE~ 195 (207)
|+|+.+..+-.|..+.-. .- ...+..=+ +.||+||++.|.+-|++
T Consensus 64 ~~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ls~~el~~L~~lL~~ 119 (120)
T d1okra_ 64 FQYYSLVEESDIKYKTSKNFINKVYKGGFNSLVLNFVEKEDLSQDEIEELRNILNK 119 (120)
T ss_dssp EEEEESSCHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHSCCCHHHHHHHHHHHTC
T ss_pred eEEeecCCHHHHHHHHHHHHHHHHHcccHHHHHHHHHHccCCCHHHHHHHHHHHhc
Confidence 677777666666544321 11 11111111 56999999999988753
No 7
>d1s3ja_ a.4.5.28 (A:) Putative transcriptional regulator YusO {Bacillus subtilis [TaxId: 1423]}
Probab=55.17 E-value=8.5 Score=26.24 Aligned_cols=75 Identities=15% Similarity=0.083 Sum_probs=55.0
Q ss_pred hHHhCCCcccchhHHHHHHHhhhhhheeee-----eeeeeecCCccHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 028601 121 LELFGVDPLQAGNVVEVIVVLGLTLGWVST-----YIFRVSNKEMTYAQQLRDYEDKVMQKRLEGLTEAELEALIEQVEE 195 (207)
Q Consensus 121 Lq~~GlD~~~AGiwsQ~lLVlGlvVgWv~S-----YLfRV~tk~MTY~qQ~kdYE~avLQKRleeLtpEEle~L~aEIE~ 195 (207)
-..++++...+.-...-+.=-|++.-+... +.++.--+-..+.++.....++.+++-|+.|+|||++.+..=+++
T Consensus 56 a~~~~i~~~~vs~~l~~L~~~glv~r~~~~~D~R~~~v~lT~~G~~~~~~~~~~~~~~~~~~~~~l~~~e~~~l~~~l~k 135 (143)
T d1s3ja_ 56 AERMEVKPSAVTLMADRLEQKNLIARTHNTKDRRVIDLSLTDEGDIKFEEVLAGRKAIMARYLSFLTEEEMLQAAHITAK 135 (143)
T ss_dssp HHHHTSCHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHCcCHHHHHHHHHHHHHhhhheeeeecCCCCceEEEECHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 457888887777777777666653222221 344444455678888889999999999999999999998877765
No 8
>d1m70a2 a.3.1.4 (A:93-190) Cytochrome c4 {Pseudomonas stutzeri [TaxId: 316]}
Probab=53.33 E-value=5.8 Score=26.66 Aligned_cols=31 Identities=29% Similarity=0.503 Sum_probs=24.6
Q ss_pred HHHHHHHHH---------HHHHHHHhcCCHHHHHHHHHHH
Q 028601 163 AQQLRDYED---------KVMQKRLEGLTEAELEALIEQV 193 (207)
Q Consensus 163 ~qQ~kdYE~---------avLQKRleeLtpEEle~L~aEI 193 (207)
.+|+++|++ .+|..-...||++|+++|-+=|
T Consensus 55 ~~qL~~~~~g~r~~~~~~~~M~~~~~~lsd~di~~la~Yi 94 (98)
T d1m70a2 55 AKQLTDFREGNRTNDGDTMIMRGVAAKLSNKDIEALSSYI 94 (98)
T ss_dssp HHHHHHHHHTSCCTTTTTCHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCchhhhHHHHHHhCCHHHHHHHHHHH
Confidence 458888873 3788889999999999886544
No 9
>d2a61a1 a.4.5.28 (A:5-143) Transcriptional regulator TM0710 {Thermotoga maritima [TaxId: 2336]}
Probab=52.91 E-value=9.8 Score=25.88 Aligned_cols=97 Identities=14% Similarity=0.208 Sum_probs=66.5
Q ss_pred CCccccchhhhhhhHHHHHHHHHH-HHhhHHhCCCcccchhHHHHHHHhhhhhheee---------eeeeeeecCCccHH
Q 028601 94 TPFGYTRKDVLLIGVGVTVIGYGL-KSGLELFGVDPLQAGNVVEVIVVLGLTLGWVS---------TYIFRVSNKEMTYA 163 (207)
Q Consensus 94 ~pFgMtR~DVI~IGlgvfllGg~l-Y~gLq~~GlD~~~AGiwsQ~lLVlGlvVgWv~---------SYLfRV~tk~MTY~ 163 (207)
.++|++-.+...+-.+- --|+.- --+-+.+|++.........-+.=.|+ +- ..+.++-.+-..+.
T Consensus 24 ~~~glt~~q~~iL~~i~-~~~~~t~~~la~~l~i~~~tvs~~l~~L~~~gl----i~r~~~~~D~R~~~i~LT~~G~~~~ 98 (139)
T d2a61a1 24 RDFGITPAQFDILQKIY-FEGPKRPGELSVLLGVAKSTVTGLVKRLEADGY----LTRTPDPADRRAYFLVITRKGEEVI 98 (139)
T ss_dssp HHHTCCHHHHHHHHHHH-HHCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTS----EEEEEETTEEEEEEEEECHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHH-HcCCCCHHHHHHHhCCCcccchHHHHHHHhcCe----eeeeeccCCCCeEEEEECHHHHHHH
Confidence 45677666654444332 233222 22345788888777777776666554 43 34556666667888
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 028601 164 QQLRDYEDKVMQKRLEGLTEAELEALIEQVEE 195 (207)
Q Consensus 164 qQ~kdYE~avLQKRleeLtpEEle~L~aEIE~ 195 (207)
++.....+...+.=++.++|+|.+.+.+-+++
T Consensus 99 ~~~~~~~~~~~~~~~~~l~~~e~~~l~~~l~~ 130 (139)
T d2a61a1 99 EKVIERRENFIEKITSDLGKEKSSKILDYLKE 130 (139)
T ss_dssp HHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999777765
No 10
>d1rypd_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=52.34 E-value=2.8 Score=31.93 Aligned_cols=23 Identities=26% Similarity=0.514 Sum_probs=19.9
Q ss_pred HhcCCHHHHHHHHHHHHHHHhcc
Q 028601 178 LEGLTEAELEALIEQVEEEKRRL 200 (207)
Q Consensus 178 leeLtpEEle~L~aEIE~Ek~~~ 200 (207)
+..|++||+++++.+|++|+++.
T Consensus 219 ~~~l~~~ei~~~l~~i~~~~~~~ 241 (241)
T d1rypd_ 219 IVALSSEEINQYVTQIEQEKQEQ 241 (241)
T ss_dssp EEECCHHHHHHHHHHHTHHHHCC
T ss_pred EEECCHHHHHHHHHHHHHHHhcC
Confidence 45699999999999999998863
No 11
>d1lnwa_ a.4.5.28 (A:) MexR repressor {Pseudomonas aeruginosa [TaxId: 287]}
Probab=48.33 E-value=18 Score=24.65 Aligned_cols=93 Identities=13% Similarity=0.038 Sum_probs=59.0
Q ss_pred CCccccchhhhhhhHHHHHHHHHH-HHhhHHhCCCcccchhHHHHHHHhhhhhheeeeeeeeeec---C----------C
Q 028601 94 TPFGYTRKDVLLIGVGVTVIGYGL-KSGLELFGVDPLQAGNVVEVIVVLGLTLGWVSTYIFRVSN---K----------E 159 (207)
Q Consensus 94 ~pFgMtR~DVI~IGlgvfllGg~l-Y~gLq~~GlD~~~AGiwsQ~lLVlGlvVgWv~SYLfRV~t---k----------~ 159 (207)
.++|+|....-++..+- -.++.- --.-..+|++..++.-.++.+-=-| | +-|.-+ + -
T Consensus 30 ~~~~lt~~q~~vL~~l~-~~~~~t~~~la~~l~~~~~~vsr~l~~L~~~G----~----v~r~~~~~D~R~~~l~lT~~G 100 (141)
T d1lnwa_ 30 QRLDLTPPDVHVLKLID-EQRGLNLQDLGRQMCRDKALITRKIRELEGRN----L----VRRERNPSDQRSFQLFLTDEG 100 (141)
T ss_dssp TTCCCCHHHHHHHHHHH-SSTTCBHHHHHHHTTCCHHHHHHHHHHHHHTT----S----EEEEECSSSSSSEEEEECHHH
T ss_pred hcCCCCHHHHHHHHHHH-HCCCCCHHHHHHHHCccHhHHHHHHHHHHHhh----c----eeeeccCCCCcchhhccCHHH
Confidence 45777766655553332 122111 1124477888877766666665554 3 444443 2 2
Q ss_pred ccHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 028601 160 MTYAQQLRDYEDKVMQKRLEGLTEAELEALIEQVEE 195 (207)
Q Consensus 160 MTY~qQ~kdYE~avLQKRleeLtpEEle~L~aEIE~ 195 (207)
-..+++...+-+...++=++.|||||++.|.+=+++
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~ls~~e~~~l~~~L~k 136 (141)
T d1lnwa_ 101 LAIHQHAEAIMSRVHDELFAPLTPVEQATLVHLLDQ 136 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 246677777888999999999999999999887765
No 12
>d3broa1 a.4.5.28 (A:3-137) Transcriptional regulator OEOE1854 {Oenococcus oeni [TaxId: 1247]}
Probab=47.21 E-value=19 Score=23.97 Aligned_cols=102 Identities=14% Similarity=0.114 Sum_probs=64.3
Q ss_pred CCccccchhhhhhhHHHHHHHH--HHHHhhHHhCCCcccchhHHHHHHHhhhhhheee-----eeeeeeecCCccHHHHH
Q 028601 94 TPFGYTRKDVLLIGVGVTVIGY--GLKSGLELFGVDPLQAGNVVEVIVVLGLTLGWVS-----TYIFRVSNKEMTYAQQL 166 (207)
Q Consensus 94 ~pFgMtR~DVI~IGlgvfllGg--~lY~gLq~~GlD~~~AGiwsQ~lLVlGlvVgWv~-----SYLfRV~tk~MTY~qQ~ 166 (207)
.+||+|...--.+.+..---|. -..-+.+.+|++...+..+++-+-=-|++.-... ....++--+-=...++.
T Consensus 23 ~~~glt~~q~~vL~~l~~~~~~~it~~ela~~~~~~~~~vs~~l~~L~~~g~v~r~~~~~D~R~~~i~lT~~G~~~~~~~ 102 (135)
T d3broa1 23 KKYDLTGTQMTIIDYLSRNKNKEVLQRDLESEFSIKSSTATVLLQRMEIKKLLYRKVSGKDSRQKCLKLTKKANKLETII 102 (135)
T ss_dssp HTTTCCHHHHHHHHHHHHTTTSCCBHHHHHHHHTCCHHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHTTHHHH
T ss_pred HHcCCCHHHHHHHHHHHHcCCCCCCHHHHHHHHCcCHhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhcccHHHHHHHHHH
Confidence 4678888776655544422221 2234567999999999988888877765222211 11222222222345566
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 028601 167 RDYEDKVMQKRLEGLTEAELEALIEQVEE 195 (207)
Q Consensus 167 kdYE~avLQKRleeLtpEEle~L~aEIE~ 195 (207)
..--.+..+.-++.+++||++.+.+-+++
T Consensus 103 ~~~~~~~~~~~~~~l~~ee~~~~~~~L~~ 131 (135)
T d3broa1 103 LSYMDSDQSQMTSGLNKEEVVFLEKILKR 131 (135)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 66667788888999999999998776654
No 13
>d1ic8a2 a.35.1.1 (A:87-180) Hepatocyte nuclear factor 1a (LFB1/HNF1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=46.34 E-value=5 Score=28.93 Aligned_cols=20 Identities=30% Similarity=0.233 Sum_probs=17.6
Q ss_pred HHhcCCHHHHHHHHHHHHHH
Q 028601 177 RLEGLTEAELEALIEQVEEE 196 (207)
Q Consensus 177 RleeLtpEEle~L~aEIE~E 196 (207)
-||.|+|||......|||+-
T Consensus 2 ~~~~~~~eE~~~~~~eVE~l 21 (94)
T d1ic8a2 2 ELENLSPEEAAHQKAVVETL 21 (94)
T ss_dssp CCCSCCHHHHHHHHHHHHHH
T ss_pred chhhcCchhHhHHHHHHHHH
Confidence 37899999999999999983
No 14
>d2g9wa1 a.4.5.39 (A:3-124) Hypothetical protein Rv1846c {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=43.34 E-value=24 Score=24.18 Aligned_cols=48 Identities=15% Similarity=0.090 Sum_probs=32.5
Q ss_pred eeeeeeecCCccH-HHHHHHHH---------HHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 028601 150 TYIFRVSNKEMTY-AQQLRDYE---------DKVMQKRLEGLTEAELEALIEQVEEEK 197 (207)
Q Consensus 150 SYLfRV~tk~MTY-~qQ~kdYE---------~avLQKRleeLtpEEle~L~aEIE~Ek 197 (207)
+|+|+..-.+=.| ..+.++.- .+.+..-++.++++|++.|.+-|++-+
T Consensus 64 ~~~Y~~~i~~e~~~~~~~~~~l~~~~~~gs~~~~~~~l~~~ls~~el~~L~~ll~~~e 121 (122)
T d2g9wa1 64 AHRYAPVHGRDELVAGLMVDALAQAEDSGSRQAALVHFVERVGADEADALRRALAELE 121 (122)
T ss_dssp CCEEEESSCHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred eEEEEeCCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHCCHHHHHHHHHHHHhhh
Confidence 5677776555555 33333322 566777778899999999998887643
No 15
>d2fbia1 a.4.5.28 (A:5-140) Probable transcriptional regulator PA4135 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=43.07 E-value=15 Score=24.72 Aligned_cols=102 Identities=16% Similarity=0.103 Sum_probs=65.1
Q ss_pred CCccccchhhhhhhHHHHHHHHH-HHHhhHHhCCCcccchhHHHHHHHhhhhhheee-----eeeeeeecCCccHHHHHH
Q 028601 94 TPFGYTRKDVLLIGVGVTVIGYG-LKSGLELFGVDPLQAGNVVEVIVVLGLTLGWVS-----TYIFRVSNKEMTYAQQLR 167 (207)
Q Consensus 94 ~pFgMtR~DVI~IGlgvfllGg~-lY~gLq~~GlD~~~AGiwsQ~lLVlGlvVgWv~-----SYLfRV~tk~MTY~qQ~k 167 (207)
.++|+|-.+...+-..- --|.. .--.-..+|+|.....-...-+.=-|++.-... .....+-.+-....+|..
T Consensus 24 ~~~glt~~q~~vL~~l~-~~~~~t~~~la~~~~i~~~~vs~~i~~L~~~gli~r~~~~~D~R~~~l~lT~~G~~~~~~~~ 102 (136)
T d2fbia1 24 NQHGLTEQQWRVIRILR-QQGEMESYQLANQACILRPSMTGVLARLERDGIVRRWKAPKDQRRVYVNLTEKGQQCFVSMS 102 (136)
T ss_dssp HHHTCCHHHHHHHHHHH-HHCSEEHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHHHHHH
T ss_pred HHcCCCHHHHHHHHHHH-HcCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEeecCccCchhhhccCHHHHHHHHHHH
Confidence 35677777765554322 12211 122345788887777666666655554222221 244455555567888888
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 028601 168 DYEDKVMQKRLEGLTEAELEALIEQVEEE 196 (207)
Q Consensus 168 dYE~avLQKRleeLtpEEle~L~aEIE~E 196 (207)
.-.+...++-++.|++||++.+.+=+++-
T Consensus 103 ~~~~~~~~~~~~~l~~ee~~~l~~~L~~l 131 (136)
T d2fbia1 103 GDMEKNYQRIQERFGEEKLAQLLELLNEL 131 (136)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 88899999999999999999998777663
No 16
>d2fbha1 a.4.5.28 (A:8-144) Transcriptional regulator PA3341 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=42.92 E-value=23 Score=23.69 Aligned_cols=97 Identities=12% Similarity=0.093 Sum_probs=62.2
Q ss_pred CCccccchhhhhhhHHHHHHHH-HH-HHhhHHhCCCcccchhHHHHHHHhhhhhheeee---------eeeeeecCCccH
Q 028601 94 TPFGYTRKDVLLIGVGVTVIGY-GL-KSGLELFGVDPLQAGNVVEVIVVLGLTLGWVST---------YIFRVSNKEMTY 162 (207)
Q Consensus 94 ~pFgMtR~DVI~IGlgvfllGg-~l-Y~gLq~~GlD~~~AGiwsQ~lLVlGlvVgWv~S---------YLfRV~tk~MTY 162 (207)
.|+|++......+-... -.+. .- --.-..+|++.....-.+.-+.=-| ||-- .+.++--+--..
T Consensus 22 ~~~glt~~q~~iL~~l~-~~~~~~t~~~la~~~~~~~~~vs~~v~~L~~~g----li~r~~~~~D~R~~~i~lT~~G~~~ 96 (137)
T d2fbha1 22 SHLGLSQARWLVLLHLA-RHRDSPTQRELAQSVGVEGPTLARLLDGLESQG----LVRRLAVAEDRRAKHIVLTPKADVL 96 (137)
T ss_dssp GGGCCTTTHHHHHHHHH-HCSSCCBHHHHHHHHTCCHHHHHHHHHHHHHTT----SEEEECCBTTBCSCEEEECTTHHHH
T ss_pred HHcCCCHHHHHHHHHHH-HcCCCCcHHHHHHHHCCCHHHHHHHHHHHHHcC----CccccCCCCCCCchhhhcCHHHHHH
Confidence 46777665543322221 1121 11 1234577888777666666555554 4442 244555566778
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 028601 163 AQQLRDYEDKVMQKRLEGLTEAELEALIEQVEE 195 (207)
Q Consensus 163 ~qQ~kdYE~avLQKRleeLtpEEle~L~aEIE~ 195 (207)
.++..+...+..++=++.|+|||++.+..-+++
T Consensus 97 ~~~~~~~~~~~~~~~~~~l~~~e~~~l~~~l~~ 129 (137)
T d2fbha1 97 IADIEAIAASVRNDVLTGIDESEQALCQQVLLR 129 (137)
T ss_dssp HHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 888888889999999999999999998877765
No 17
>d1utga_ a.101.1.1 (A:) Uteroglobin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=41.81 E-value=16 Score=24.77 Aligned_cols=38 Identities=24% Similarity=0.477 Sum_probs=30.9
Q ss_pred cHHHHHHHHH--------HHHHHHHHhcCCHHHHHHHHHHHHHHHh
Q 028601 161 TYAQQLRDYE--------DKVMQKRLEGLTEAELEALIEQVEEEKR 198 (207)
Q Consensus 161 TY~qQ~kdYE--------~avLQKRleeLtpEEle~L~aEIE~Ek~ 198 (207)
.|.+.+|.|. .+.|.+..|.||||..+.+.+=+|+=..
T Consensus 20 eY~~~vk~y~~~~~~le~~~~lK~cvDtLt~edK~~i~~liekI~~ 65 (70)
T d1utga_ 20 SYETSLKEFEPDDTMKDAGMQMKKVLDSLPQTTRENIMKLTEKIVK 65 (70)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHccCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Confidence 3888889887 5778899999999999988877766433
No 18
>d1fcdc1 a.3.1.4 (C:1-80) Flavocytochrome c sulfide dehydrogenase, FCSD, cytochrome subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}
Probab=41.71 E-value=6.7 Score=24.60 Aligned_cols=32 Identities=13% Similarity=0.396 Sum_probs=23.6
Q ss_pred HHHHHHH-----HHHHHHHHhcCCHHHHHHHHHHHHH
Q 028601 164 QQLRDYE-----DKVMQKRLEGLTEAELEALIEQVEE 195 (207)
Q Consensus 164 qQ~kdYE-----~avLQKRleeLtpEEle~L~aEIE~ 195 (207)
+|+++|+ ..+|..-...||++|+++|.+=+..
T Consensus 39 ~~l~~~~~g~~~~~~M~~~~~~Lsd~ei~~la~Y~~s 75 (80)
T d1fcdc1 39 EVMEGFKSGEIASTIMGRIAKGYSTADFEKMAGYFKQ 75 (80)
T ss_dssp HHHHHHHHTCSCCSSHHHHHTTSCHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhhhhhhHHHHHccCCHHHHHHHHHHHHh
Confidence 4566666 3347766778999999999887754
No 19
>d1q5qh_ d.153.1.4 (H:) Proteasome beta subunit (catalytic) {Rhodococcus erythropolis [TaxId: 1833]}
Probab=41.00 E-value=6.8 Score=28.54 Aligned_cols=22 Identities=14% Similarity=0.214 Sum_probs=19.2
Q ss_pred HhcCCHHHHHHHHHHHHHHHhc
Q 028601 178 LEGLTEAELEALIEQVEEEKRR 199 (207)
Q Consensus 178 leeLtpEEle~L~aEIE~Ek~~ 199 (207)
+..+++||.+++.+++.+|+.+
T Consensus 202 ~~~l~~~ei~~~~~~~~~~~~~ 223 (224)
T d1q5qh_ 202 AVHVSEETTSELARRIVAERTE 223 (224)
T ss_dssp EEECCHHHHHHHHHHHHHHHHT
T ss_pred EEEcCHHHHHHHHHHHHHHHhc
Confidence 5679999999999999998865
No 20
>d1z91a1 a.4.5.28 (A:8-144) Organic hydroperoxide resistance transcriptional regulator OhrR {Bacillus subtilis [TaxId: 1423]}
Probab=40.64 E-value=6.9 Score=26.73 Aligned_cols=98 Identities=10% Similarity=0.036 Sum_probs=56.6
Q ss_pred CCccccchhhhhhhHHHHHHHHHHH-HhhHHhCCCcccchhHHHHHHHhhhhhheeee------eeeeeecCCccHHHHH
Q 028601 94 TPFGYTRKDVLLIGVGVTVIGYGLK-SGLELFGVDPLQAGNVVEVIVVLGLTLGWVST------YIFRVSNKEMTYAQQL 166 (207)
Q Consensus 94 ~pFgMtR~DVI~IGlgvfllGg~lY-~gLq~~GlD~~~AGiwsQ~lLVlGlvVgWv~S------YLfRV~tk~MTY~qQ~ 166 (207)
.|||+|......+...-. -|+.-- -.-...|++..+......-+---|+ |-..-+ ...+.--+-+.+.+|.
T Consensus 27 ~~~gLt~~q~~vL~~l~~-~~~~t~~~La~~~~i~~~~vsr~i~~L~~~gl-v~r~~~~~D~R~~~i~lT~~G~~~~~~~ 104 (137)
T d1z91a1 27 DKLNITYPQYLALLLLWE-HETLTVKKMGEQLYLDSGTLTPMLKRMEQQGL-ITRKRSEEDERSVLISLTEDGALLKEKA 104 (137)
T ss_dssp TTTCCCHHHHHHHHHHHH-HSEEEHHHHHHTTTCCHHHHHHHHHHHHHHTS-EECCBCSSCTTSBEEEECHHHHSGGGGT
T ss_pred HHcCcCHHHHHHHHHHHc-CCCCCHHHHHHHHCcCHHHHHHHHHHHhhccc-eEEeecCCCCCeEEEEECHHHHHHHHHH
Confidence 468888777655543322 222211 1234778888777777777666664 211111 1222222234456666
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 028601 167 RDYEDKVMQKRLEGLTEAELEALIEQVEE 195 (207)
Q Consensus 167 kdYE~avLQKRleeLtpEEle~L~aEIE~ 195 (207)
..+.+++.+ +.++++||++.+.+.+++
T Consensus 105 ~~~~~~~~~--~~~~~~ee~~~l~~~L~~ 131 (137)
T d1z91a1 105 VDIPGTILG--LSKQSGEDLKQLKSALYT 131 (137)
T ss_dssp TTHHHHHHH--HTCCCTHHHHHHHHHHHH
T ss_pred HHHHHHHHH--HhCCCHHHHHHHHHHHHH
Confidence 666665433 789999999999988875
No 21
>d1h1oa1 a.3.1.4 (A:12-93) Cytochrome c4 {Thiobacillus ferrooxidans [TaxId: 920]}
Probab=40.05 E-value=21 Score=22.00 Aligned_cols=25 Identities=24% Similarity=0.294 Sum_probs=19.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHH
Q 028601 173 VMQKRLEGLTEAELEALIEQVEEEK 197 (207)
Q Consensus 173 vLQKRleeLtpEEle~L~aEIE~Ek 197 (207)
.|..--..||+||+++|-+=|...+
T Consensus 52 ~M~~~~~~LSd~eI~~la~Yi~sl~ 76 (82)
T d1h1oa1 52 YMWPVAQALDSAKITALADYFNAQK 76 (82)
T ss_dssp HTHHHHHTCCHHHHHHHHHHHHHCS
T ss_pred cchHHHhhCCHHHHHHHHHHHHhCC
Confidence 4665557899999999999887654
No 22
>d2uubm1 a.156.1.1 (M:2-126) Ribosomal protein S13 {Thermus thermophilus [TaxId: 274]}
Probab=39.06 E-value=5.7 Score=28.64 Aligned_cols=21 Identities=48% Similarity=0.548 Sum_probs=18.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 028601 175 QKRLEGLTEAELEALIEQVEE 195 (207)
Q Consensus 175 QKRleeLtpEEle~L~aEIE~ 195 (207)
.+|+.+||+||+++|.+.|+.
T Consensus 41 ~~k~~~Lt~~qi~~I~~~i~~ 61 (125)
T d2uubm1 41 ATRVKDLTEAEVVRLREYVEN 61 (125)
T ss_dssp TSBGGGCCHHHHHHHHHHHHH
T ss_pred ccccccccHHHHHHHHHHHhh
Confidence 357899999999999998875
No 23
>d1vqov1 a.2.2.1 (V:1-65) Ribosomal protein L29 (L29p) {Archaeon Haloarcula marismortui [TaxId: 2238]}
Probab=38.21 E-value=13 Score=24.01 Aligned_cols=22 Identities=27% Similarity=0.422 Sum_probs=17.8
Q ss_pred HHHhcCCHHHHHHHHHHHHHHH
Q 028601 176 KRLEGLTEAELEALIEQVEEEK 197 (207)
Q Consensus 176 KRleeLtpEEle~L~aEIE~Ek 197 (207)
+-+.+||+|||++.+.|+.+|-
T Consensus 6 ~elr~ls~~eL~~~l~elk~El 27 (65)
T d1vqov1 6 QEIRDMTPAEREAELDDLKTEL 27 (65)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHH
Confidence 3467899999999998888764
No 24
>d1cnoa_ a.3.1.1 (A:) Cytochrome c552 {Pseudomonas nautica [TaxId: 2743]}
Probab=36.78 E-value=40 Score=20.75 Aligned_cols=33 Identities=24% Similarity=0.411 Sum_probs=24.7
Q ss_pred HHHHHHHH--------HHHHHHHHhcCCHHHHHHHHHHHHH
Q 028601 163 AQQLRDYE--------DKVMQKRLEGLTEAELEALIEQVEE 195 (207)
Q Consensus 163 ~qQ~kdYE--------~avLQKRleeLtpEEle~L~aEIE~ 195 (207)
..|+++|+ ...|..-...||++|++.|-+=|..
T Consensus 41 ~~~l~~~~~g~r~~~~~~~m~~~~~~Lsd~di~~laaYi~s 81 (86)
T d1cnoa_ 41 VAALKAYKAGQRQGGQAPVMQGQATALSDADIANLAAYYAS 81 (86)
T ss_dssp HHHHHHHHTTCBCSTTHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccccCCcchhhHHHHccCCHHHHHHHHHHHHh
Confidence 45666666 3467777789999999999887754
No 25
>d1fcdc2 a.3.1.4 (C:81-174) Flavocytochrome c sulfide dehydrogenase, FCSD, cytochrome subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}
Probab=35.92 E-value=18 Score=23.05 Aligned_cols=23 Identities=22% Similarity=0.265 Sum_probs=18.7
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 028601 172 KVMQKRLEGLTEAELEALIEQVE 194 (207)
Q Consensus 172 avLQKRleeLtpEEle~L~aEIE 194 (207)
..|..-...||++|+++|.+=+.
T Consensus 69 ~~M~~~~~~LSd~di~alaaY~~ 91 (94)
T d1fcdc2 69 SKLRELLKAEGDAGLDALFAFYA 91 (94)
T ss_dssp HHHHTTGGGSTHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Confidence 45777789999999999987654
No 26
>d1kkha1 d.14.1.5 (A:1-180) Mevalonate kinase {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=34.94 E-value=12 Score=26.05 Aligned_cols=47 Identities=26% Similarity=0.340 Sum_probs=34.6
Q ss_pred cccchhHHHHHHHhhhhhheeeeeeeeeecCCccHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcc
Q 028601 128 PLQAGNVVEVIVVLGLTLGWVSTYIFRVSNKEMTYAQQLRDYEDKVMQKRLEGLTEAELEALIEQVEEEKRRL 200 (207)
Q Consensus 128 ~~~AGiwsQ~lLVlGlvVgWv~SYLfRV~tk~MTY~qQ~kdYE~avLQKRleeLtpEEle~L~aEIE~Ek~~~ 200 (207)
|..+|+.|++-+++++ +.|+..+. + .+|+++|+.+|-.++|.+-...
T Consensus 109 P~g~GLGSSaa~~va~-~~al~~~~----~---------------------~~l~~~~l~~la~~~E~~~~g~ 155 (180)
T d1kkha1 109 PISCGLGSSASITIGT-IKAVSGFY----N---------------------KELKDDEIAKLGYMVEKEIQGK 155 (180)
T ss_dssp CSSSSSCHHHHHHHHH-HHHHHHTT----T---------------------CCCCHHHHHHHHHHHHHHHSSS
T ss_pred hhhcCccccchhHHHH-HHHHHHHh----C---------------------cCCCHHHHHHHHHHHHHHhCCC
Confidence 4478999999999876 66654332 0 2588999999999998876543
No 27
>d1sd4a_ a.4.5.39 (A:) Penicillinase repressor BlaI {Staphylococcus aureus [TaxId: 1280]}
Probab=34.69 E-value=44 Score=22.88 Aligned_cols=49 Identities=16% Similarity=0.285 Sum_probs=29.4
Q ss_pred eeeeeeecCCccHHHH-HHHHH--------HHHHHHHH--hcCCHHHHHHHHHHHHHHHh
Q 028601 150 TYIFRVSNKEMTYAQQ-LRDYE--------DKVMQKRL--EGLTEAELEALIEQVEEEKR 198 (207)
Q Consensus 150 SYLfRV~tk~MTY~qQ-~kdYE--------~avLQKRl--eeLtpEEle~L~aEIE~Ek~ 198 (207)
+|+|+.+-.+=.|..+ .++.= .+.+.-=+ +.||++|++.|.+-|++-++
T Consensus 62 ~~~Y~~~v~~~~~~~~~~~~~~~~~~~gs~~~lv~~~~~~~~ls~~el~eL~~~l~~~~k 121 (122)
T d1sd4a_ 62 IYFYSSNIKEDDIKMKTAKTFLNKLYGGDMKSLVLNFAKNEELNNKEIEELRDILNDISK 121 (122)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC
T ss_pred eEEEeecCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHhCCCCCHHHHHHHHHHHHHHhc
Confidence 5777777655555322 12211 23333333 55999999999998887543
No 28
>d2etha1 a.4.5.28 (A:1-140) Putative transcriptional regulator TM0816 {Thermotoga maritima [TaxId: 2336]}
Probab=33.65 E-value=44 Score=22.28 Aligned_cols=67 Identities=16% Similarity=0.259 Sum_probs=50.5
Q ss_pred hHHhCCCcccchhHHHHHHHhhhhhheeeeeeeeeecC-------------CccHHHHHHHHHHHHHHHHHhcCCHHHHH
Q 028601 121 LELFGVDPLQAGNVVEVIVVLGLTLGWVSTYIFRVSNK-------------EMTYAQQLRDYEDKVMQKRLEGLTEAELE 187 (207)
Q Consensus 121 Lq~~GlD~~~AGiwsQ~lLVlGlvVgWv~SYLfRV~tk-------------~MTY~qQ~kdYE~avLQKRleeLtpEEle 187 (207)
-+.+|++...+.-.+.-+.=-|+ +-|+.+. --.+.+|...+.+...+.=++.+++||++
T Consensus 53 a~~l~i~~~~vs~~v~~L~~~gl--------i~r~~~~~D~R~~~l~lT~~G~~~~~~~~~~~~~~~~~~~~~~~~~e~~ 124 (140)
T d2etha1 53 AEFLSTTKSNVTNVVDSLEKRGL--------VVREMDPVDRRTYRVVLTEKGKEIFGEILSNFESLLKSVLEKFSEEDFK 124 (140)
T ss_dssp HHHTTSCHHHHHHHHHHHHHTTS--------EEEEECTTTSSCEEEEECHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHCcCHHHHHHHHHHHHHCCC--------eeeeecccccchhhhhcCHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 45778887777766666666653 4444433 34688899999999999999999999999
Q ss_pred HHHHHHHH
Q 028601 188 ALIEQVEE 195 (207)
Q Consensus 188 ~L~aEIE~ 195 (207)
.+.+-++.
T Consensus 125 ~~~~~l~~ 132 (140)
T d2etha1 125 VVSEGFNR 132 (140)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88877765
No 29
>d1wgfa_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=33.17 E-value=37 Score=21.76 Aligned_cols=29 Identities=10% Similarity=0.170 Sum_probs=22.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 028601 171 DKVMQKRLEGLTEAELEALIEQVEEEKRR 199 (207)
Q Consensus 171 ~avLQKRleeLtpEEle~L~aEIE~Ek~~ 199 (207)
...+-+++.+||++|.+.-.+.-++++.+
T Consensus 52 ~k~l~~~W~~Ls~~eK~~Y~~~A~~~k~~ 80 (90)
T d1wgfa_ 52 TRLLARMWNDLSEKKKAKYKAREAALKAQ 80 (90)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 45678899999999999988777766543
No 30
>d1hyea2 d.162.1.1 (A:146-313) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=33.04 E-value=11 Score=26.47 Aligned_cols=19 Identities=26% Similarity=0.272 Sum_probs=13.8
Q ss_pred cCCHHHHHHHHHHHHHHHh
Q 028601 180 GLTEAELEALIEQVEEEKR 198 (207)
Q Consensus 180 eLtpEEle~L~aEIE~Ek~ 198 (207)
+|+|+|+++|++-.+.-++
T Consensus 142 ~Ls~~E~~~l~~Sa~~lk~ 160 (168)
T d1hyea2 142 ELDKDEIIAFRKSAEIIKK 160 (168)
T ss_dssp CCCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHH
Confidence 5888888888886665443
No 31
>d1v64a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=32.56 E-value=26 Score=23.48 Aligned_cols=28 Identities=14% Similarity=0.251 Sum_probs=20.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHh
Q 028601 171 DKVMQKRLEGLTEAELEALIEQVEEEKR 198 (207)
Q Consensus 171 ~avLQKRleeLtpEEle~L~aEIE~Ek~ 198 (207)
...|-++..+||++|.+.-.++-++++.
T Consensus 45 ~k~ig~~W~~Ls~~eK~~Y~~~a~~~k~ 72 (108)
T d1v64a_ 45 MVLCSQQWKLLSQKEKDAYHKKCDQKKK 72 (108)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 4557778888888888887777665543
No 32
>d1q2la2 d.185.1.1 (A:733-960) Protease III {Escherichia coli [TaxId: 562]}
Probab=31.92 E-value=82 Score=23.08 Aligned_cols=48 Identities=10% Similarity=0.085 Sum_probs=29.2
Q ss_pred eeeeeec--CCccHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Q 028601 151 YIFRVSN--KEMTYAQQLRDYEDKVMQKRLEGLTEAELEALIEQVEEEKR 198 (207)
Q Consensus 151 YLfRV~t--k~MTY~qQ~kdYE~avLQKRleeLtpEEle~L~aEIE~Ek~ 198 (207)
+.|-|-+ .+-.+.+++=+=.-..+.+++++|++||.+...+-+-....
T Consensus 82 ~~~~vqS~~~~~~~l~~~I~~fl~~~~~~l~~~~~eef~~~K~~li~~l~ 131 (228)
T d1q2la2 82 MGFLLQSNDKQPSFLWERYKAFFPTAEAKLRAMKPDEFAQIQQAVITQML 131 (228)
T ss_dssp EEEEEEESSSCHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred EEEEEEeCCCCHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHh
Confidence 3344544 34445444432223346788999999999988776655443
No 33
>d2iida2 d.16.1.5 (A:320-432) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}
Probab=31.06 E-value=13 Score=23.77 Aligned_cols=21 Identities=5% Similarity=0.132 Sum_probs=14.9
Q ss_pred HHHHhcCCHHHH-HHHHHHHHH
Q 028601 175 QKRLEGLTEAEL-EALIEQVEE 195 (207)
Q Consensus 175 QKRleeLtpEEl-e~L~aEIE~ 195 (207)
..|++.|++||+ +.+++++++
T Consensus 59 a~~~~~l~~e~~~~~~l~~L~~ 80 (113)
T d2iida2 59 ANFFQALDFKDCADIVFNDLSL 80 (113)
T ss_dssp HHTTTTSCHHHHHHHHHHHHHH
T ss_pred hHHHHcCCHHHHHHHHHHHHHH
Confidence 578999999984 455666654
No 34
>d1r73a_ a.2.2.1 (A:) Ribosomal protein L29 (L29p) {Thermotoga maritima [TaxId: 2336]}
Probab=31.05 E-value=16 Score=23.68 Aligned_cols=20 Identities=30% Similarity=0.503 Sum_probs=16.5
Q ss_pred HhcCCHHHHHHHHHHHHHHH
Q 028601 178 LEGLTEAELEALIEQVEEEK 197 (207)
Q Consensus 178 leeLtpEEle~L~aEIE~Ek 197 (207)
+.+||++||++...|+.+|-
T Consensus 6 lr~ls~~eL~~~l~~l~~el 25 (66)
T d1r73a_ 6 LRNYTDEELKNLLEEKKRQL 25 (66)
T ss_dssp HHHSCHHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHH
Confidence 66899999999888887763
No 35
>d2gy9m1 a.156.1.1 (M:1-114) Ribosomal protein S13 {Escherichia coli [TaxId: 562]}
Probab=29.89 E-value=8.4 Score=27.23 Aligned_cols=21 Identities=19% Similarity=0.510 Sum_probs=16.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 028601 175 QKRLEGLTEAELEALIEQVEE 195 (207)
Q Consensus 175 QKRleeLtpEEle~L~aEIE~ 195 (207)
.+|+.+||++|+++|.++|+.
T Consensus 41 ~~kv~~Lt~~qi~~l~~~i~~ 61 (114)
T d2gy9m1 41 DVKISELSEGQIDTLRDEVAK 61 (114)
T ss_dssp TSBTTSCCHHHHHHHHHHHHS
T ss_pred ccccCcccHHHHHHHHHHHHh
Confidence 357788999999999888863
No 36
>d1t3wa_ a.236.1.1 (A:) DNA primase DnaG, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=29.15 E-value=37 Score=23.14 Aligned_cols=29 Identities=21% Similarity=0.209 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHH--hcCCHHHHHHHHHHH
Q 028601 165 QLRDYEDKVMQKRL--EGLTEAELEALIEQV 193 (207)
Q Consensus 165 Q~kdYE~avLQKRl--eeLtpEEle~L~aEI 193 (207)
|..+.+-+.|.+|. .+||+||.+.|++=+
T Consensus 99 ~~~~~~~~~L~~k~~~~~Lt~eEk~eL~~L~ 129 (134)
T d1t3wa_ 99 SLLELRQEELIARERTHGLSNEERLELWTLN 129 (134)
T ss_dssp HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhccCCCCHHHHHHHHHHH
Confidence 44444555555554 789999998887644
No 37
>d1y6ja2 d.162.1.1 (A:149-317) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]}
Probab=29.08 E-value=17 Score=25.73 Aligned_cols=20 Identities=40% Similarity=0.310 Sum_probs=14.1
Q ss_pred cCCHHHHHHHHHHHHHHHhc
Q 028601 180 GLTEAELEALIEQVEEEKRR 199 (207)
Q Consensus 180 eLtpEEle~L~aEIE~Ek~~ 199 (207)
+|+|+|+++|.+-.++-++.
T Consensus 144 ~Ls~~E~~~l~~s~~~lk~~ 163 (169)
T d1y6ja2 144 NLTPEEEEALRFSAEQVKKV 163 (169)
T ss_dssp CCCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHH
Confidence 58888888888766654443
No 38
>d2gycw1 a.2.2.1 (W:1-60) Ribosomal protein L29 (L29p) {Escherichia coli [TaxId: 562]}
Probab=28.11 E-value=23 Score=22.41 Aligned_cols=23 Identities=22% Similarity=0.190 Sum_probs=18.4
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHh
Q 028601 176 KRLEGLTEAELEALIEQVEEEKR 198 (207)
Q Consensus 176 KRleeLtpEEle~L~aEIE~Ek~ 198 (207)
+-+.+||.+||++.+.|+.+|--
T Consensus 4 ~elr~ls~~eL~~~l~~l~~el~ 26 (60)
T d2gycw1 4 KELREKSVEELNTELLNLLREQF 26 (60)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHH
Confidence 34778999999999998887643
No 39
>d1lwma_ a.21.1.1 (A:) NHP6a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=28.02 E-value=71 Score=20.63 Aligned_cols=28 Identities=18% Similarity=0.323 Sum_probs=21.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHh
Q 028601 171 DKVMQKRLEGLTEAELEALIEQVEEEKR 198 (207)
Q Consensus 171 ~avLQKRleeLtpEEle~L~aEIE~Ek~ 198 (207)
...+-.+..+||++|.+.-.+.-++++.
T Consensus 52 ~k~l~~~W~~ls~~eK~~y~~~a~~~k~ 79 (93)
T d1lwma_ 52 GKKLGEKWKALTPEEKQPYEAKAQADKK 79 (93)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 4678889999999999887776666543
No 40
>d1a5za2 d.162.1.1 (A:164-333) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]}
Probab=26.44 E-value=23 Score=24.79 Aligned_cols=15 Identities=40% Similarity=0.521 Sum_probs=9.6
Q ss_pred cCCHHHHHHHHHHHH
Q 028601 180 GLTEAELEALIEQVE 194 (207)
Q Consensus 180 eLtpEEle~L~aEIE 194 (207)
+|+++|+++|++-.+
T Consensus 144 ~Ls~~E~~~l~~sa~ 158 (172)
T d1a5za2 144 NLNEEELEAFRKSAS 158 (172)
T ss_dssp CCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 477777777766443
No 41
>d1ldna2 d.162.1.1 (A:163-330) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}
Probab=26.39 E-value=22 Score=24.58 Aligned_cols=18 Identities=17% Similarity=0.163 Sum_probs=13.8
Q ss_pred cCCHHHHHHHHHHHHHHH
Q 028601 180 GLTEAELEALIEQVEEEK 197 (207)
Q Consensus 180 eLtpEEle~L~aEIE~Ek 197 (207)
+|+|+|+++|++-.++-+
T Consensus 143 ~Ls~~E~~~L~~s~~~lk 160 (168)
T d1ldna2 143 ELNDDEKNRFHHSAATLK 160 (168)
T ss_dssp CCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 589999999987766543
No 42
>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=25.81 E-value=8.5 Score=24.95 Aligned_cols=27 Identities=33% Similarity=0.420 Sum_probs=17.7
Q ss_pred cchhhhhhhHHHHHHHHHHHHhhHHhCCC
Q 028601 99 TRKDVLLIGVGVTVIGYGLKSGLELFGVD 127 (207)
Q Consensus 99 tR~DVI~IGlgvfllGg~lY~gLq~~GlD 127 (207)
+.-|||.||-|+..+ ..-+-|...|++
T Consensus 4 ~~yDviViGaG~~Gl--~~A~~La~~G~~ 30 (297)
T d2bcgg1 4 TDYDVIVLGTGITEC--ILSGLLSVDGKK 30 (297)
T ss_dssp CBCSEEEECCSHHHH--HHHHHHHHTTCC
T ss_pred CcCCEEEECcCHHHH--HHHHHHHHCCCC
Confidence 466999999998433 333445566765
No 43
>d1io1a_ e.32.1.1 (A:) Phase 1 flagellin {Salmonella typhimurium [TaxId: 90371]}
Probab=25.81 E-value=36 Score=24.50 Aligned_cols=34 Identities=9% Similarity=0.229 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 028601 166 LRDYEDKVMQKRLEGLTEAELEALIEQVEEEKRR 199 (207)
Q Consensus 166 ~kdYE~avLQKRleeLtpEEle~L~aEIE~Ek~~ 199 (207)
+.|=|+-..|.==.-+++++.++|+.||++-+++
T Consensus 33 L~r~reLavqaan~t~~~~dr~ai~~E~~~l~~e 66 (395)
T d1io1a_ 33 LQRVRELAVQSANSTNSQSDLDSIQAEITQRLNE 66 (395)
T ss_dssp HHHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHH
Confidence 3444555555555678999999999999985554
No 44
>d1e52a_ a.2.9.1 (A:) C-terminal UvrC-binding domain of UvrB {Escherichia coli [TaxId: 562]}
Probab=25.79 E-value=12 Score=24.09 Aligned_cols=24 Identities=17% Similarity=0.167 Sum_probs=17.8
Q ss_pred hcCCHHHHHHHHHHHHHHHhcccc
Q 028601 179 EGLTEAELEALIEQVEEEKRRLAS 202 (207)
Q Consensus 179 eeLtpEEle~L~aEIE~Ek~~~~~ 202 (207)
..|||+|++++..+++++-.....
T Consensus 8 ~~ls~~el~k~i~~Le~~M~~aa~ 31 (56)
T d1e52a_ 8 MDMSPKALQQKIHELEGLMMQHAQ 31 (56)
T ss_dssp CCSCCSHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHH
Confidence 468888888888888876555443
No 45
>d1iruc_ d.153.1.4 (C:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]}
Probab=25.56 E-value=13 Score=28.06 Aligned_cols=24 Identities=33% Similarity=0.497 Sum_probs=19.0
Q ss_pred HhcCCHHHHHHHHHHHHHHHhccc
Q 028601 178 LEGLTEAELEALIEQVEEEKRRLA 201 (207)
Q Consensus 178 leeLtpEEle~L~aEIE~Ek~~~~ 201 (207)
+.-|+|+|++++.+++++++.++.
T Consensus 224 ~~~l~~~Ei~~~l~~~~e~~~~a~ 247 (250)
T d1iruc_ 224 IRVLKQKEVEQLIKKHEEEEAKAE 247 (250)
T ss_dssp EEECCHHHHHHHHHHHHTTTTTTS
T ss_pred EEECCHHHHHHHHHHHHHHhhhHh
Confidence 466899999999999988765443
No 46
>d1irud_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic) {Cow (Bos taurus) [TaxId: 9913]}
Probab=25.50 E-value=5.4 Score=30.25 Aligned_cols=25 Identities=28% Similarity=0.424 Sum_probs=20.6
Q ss_pred HhcCCHHHHHHHHHHHHHHHhcccc
Q 028601 178 LEGLTEAELEALIEQVEEEKRRLAS 202 (207)
Q Consensus 178 leeLtpEEle~L~aEIE~Ek~~~~~ 202 (207)
+.-++|+|++++.++|++|+++...
T Consensus 216 ~~~l~~~eI~~~l~~i~~~~~~~~~ 240 (243)
T d1irud_ 216 LKILNPEEIEKYVAEIEKEKEENEK 240 (243)
T ss_dssp EECCCHHHHHHHTTTTTTTTTTTTS
T ss_pred EEECCHHHHHHHHHHHHhhhhhhhh
Confidence 4568999999999999988776654
No 47
>d1v63a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=25.30 E-value=41 Score=21.92 Aligned_cols=23 Identities=17% Similarity=0.273 Sum_probs=12.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 028601 173 VMQKRLEGLTEAELEALIEQVEE 195 (207)
Q Consensus 173 vLQKRleeLtpEEle~L~aEIE~ 195 (207)
.|-++..+||++|.+.-.++-++
T Consensus 40 ~~g~~Wk~ls~~eK~~Y~~~a~~ 62 (101)
T d1v63a_ 40 EIGSRWQRISQSQKEHYKKLAEE 62 (101)
T ss_dssp HHHHHHTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHhhCCHHHHHHHHHHHHH
Confidence 45555666666666555554444
No 48
>d1ccda_ a.101.1.1 (A:) Clara cell 17kDa protein {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=25.22 E-value=27 Score=24.01 Aligned_cols=40 Identities=10% Similarity=0.253 Sum_probs=32.1
Q ss_pred cHHHHHHHHH--------HHHHHHHHhcCCHHHHHHHHHHHHHHHhcc
Q 028601 161 TYAQQLRDYE--------DKVMQKRLEGLTEAELEALIEQVEEEKRRL 200 (207)
Q Consensus 161 TY~qQ~kdYE--------~avLQKRleeLtpEEle~L~aEIE~Ek~~~ 200 (207)
.|.+.+|.|. .+.|.+..|.||||..+.+.+=+|+=..++
T Consensus 22 eY~~~vk~y~~d~~~lea~~~LK~cVDtLteedK~~i~~liekI~~Sp 69 (77)
T d1ccda_ 22 NYEAALKPFNPASDLQNAGTQLKRLVDTLPQETRINIVKLTEKILTSP 69 (77)
T ss_dssp HHHHHHTTTCCCHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTST
T ss_pred HHHHHHHccCCCHHHHHHHHHHHHHHhcCCHhhHHHHHHHHHHHHcCc
Confidence 3888888887 577889999999999998888777644443
No 49
>d1c53a_ a.3.1.1 (A:) Cytochrome c6 (synonym: cytochrome c553) {Desulfovibrio vulgaris, different strains [TaxId: 881]}
Probab=25.06 E-value=35 Score=20.64 Aligned_cols=23 Identities=17% Similarity=0.395 Sum_probs=17.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHH
Q 028601 171 DKVMQKRLEGLTEAELEALIEQV 193 (207)
Q Consensus 171 ~avLQKRleeLtpEEle~L~aEI 193 (207)
+..|..--+.||+||+++|.+=|
T Consensus 54 ~~~Mp~~~~~Lsd~ei~~l~aYi 76 (79)
T d1c53a_ 54 KAVMTNLVKRYSDEEMKAMADYM 76 (79)
T ss_pred hhccHHHHhcCCHHHHHHHHHHH
Confidence 44566666789999999987644
No 50
>d2bv6a1 a.4.5.28 (A:5-140) Transcriptional regulator MgrA {Staphylococcus aureus [TaxId: 1280]}
Probab=24.37 E-value=47 Score=22.15 Aligned_cols=98 Identities=14% Similarity=0.125 Sum_probs=55.7
Q ss_pred CCccccchhhhhhhHHHHHHHHHHHH-hhHHhCCCcccchhHHHHHHHhhhhhheee-----eeeeeeecCCccHHHHHH
Q 028601 94 TPFGYTRKDVLLIGVGVTVIGYGLKS-GLELFGVDPLQAGNVVEVIVVLGLTLGWVS-----TYIFRVSNKEMTYAQQLR 167 (207)
Q Consensus 94 ~pFgMtR~DVI~IGlgvfllGg~lY~-gLq~~GlD~~~AGiwsQ~lLVlGlvVgWv~-----SYLfRV~tk~MTY~qQ~k 167 (207)
.+||+|......+-..-- -|+.-.. .-..+|++.........-+.=-|++.-.-. .....+--+-..+.+|..
T Consensus 28 ~~~glt~~q~~vL~~i~~-~~~~t~~~la~~l~~~~~~~s~~l~~L~~~Gli~r~~~~~D~R~~~l~lT~~G~~~~~~~~ 106 (136)
T d2bv6a1 28 KKYNLTYPQFLVLTILWD-ESPVNVKKVVTELALDTGTVSPLLKRMEQVDLIKRERSEVDQREVFIHLTDKSETIRPELS 106 (136)
T ss_dssp HHHTCCHHHHHHHHHHHH-SSEEEHHHHHHHTTCCTTTHHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHHHHHHHT
T ss_pred hHcCCCHHHHHHHHHHHc-CCCCCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEEeecCCcccchhhccCHHHHHHHHHHH
Confidence 357777766555443221 2222222 245889998887777777766665221111 122222222334666776
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 028601 168 DYEDKVMQKRLEGLTEAELEALIEQVE 194 (207)
Q Consensus 168 dYE~avLQKRleeLtpEEle~L~aEIE 194 (207)
...+...+ ...++++|++.|.+-+.
T Consensus 107 ~~~~~~~~--~~~l~~~e~~~l~~~L~ 131 (136)
T d2bv6a1 107 NASDKVAS--ASSLSQDEVKELNRLLG 131 (136)
T ss_dssp THHHHHHH--HTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHH--HcCCCHHHHHHHHHHHH
Confidence 66666544 35899999998877654
No 51
>d1yioa1 a.4.6.2 (A:131-200) Response regulatory protein StyR, C-terminal domain {Pseudomonas fluorescens [TaxId: 294]}
Probab=23.67 E-value=32 Score=21.61 Aligned_cols=20 Identities=20% Similarity=0.290 Sum_probs=16.1
Q ss_pred HHHHHHHHhcCCHHHHHHHH
Q 028601 171 DKVMQKRLEGLTEAELEALI 190 (207)
Q Consensus 171 ~avLQKRleeLtpEEle~L~ 190 (207)
++.++..++.|||-|.+-|.
T Consensus 3 ~~~~~~~~~~LT~rE~~vl~ 22 (70)
T d1yioa1 3 QDQLEQLFSSLTGREQQVLQ 22 (70)
T ss_dssp HHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHccCCHHHHHHHH
Confidence 35677888999999998775
No 52
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=23.64 E-value=35 Score=19.44 Aligned_cols=20 Identities=15% Similarity=0.285 Sum_probs=14.9
Q ss_pred hhhhHHHHHHHHHHHHhhHH
Q 028601 104 LLIGVGVTVIGYGLKSGLEL 123 (207)
Q Consensus 104 I~IGlgvfllGg~lY~gLq~ 123 (207)
|.+|+.+.-+||+.|...|.
T Consensus 1 ivlgli~~tl~glf~aayqq 20 (27)
T d2e74g1 1 LVLGLVFATLGGLFYAAYQQ 20 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred CeeeehHHHHHHHHHHHHHH
Confidence 46788887888788877664
No 53
>d2zjrv1 a.2.2.1 (V:1-66) Ribosomal protein L29 (L29p) {Deinococcus radiodurans [TaxId: 1299]}
Probab=23.60 E-value=20 Score=23.12 Aligned_cols=20 Identities=15% Similarity=0.303 Sum_probs=16.4
Q ss_pred HhcCCHHHHHHHHHHHHHHH
Q 028601 178 LEGLTEAELEALIEQVEEEK 197 (207)
Q Consensus 178 leeLtpEEle~L~aEIE~Ek 197 (207)
+.+||.+||.+.+.++.+|-
T Consensus 6 lr~~s~~eL~~~l~~lk~el 25 (66)
T d2zjrv1 6 MRNLQATDFAKEIDARKKEL 25 (66)
T ss_dssp TTTSCHHHHHHHHHTHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHH
Confidence 67899999999888887753
No 54
>d2j0121 a.2.2.1 (2:12-62) Ribosomal protein L29 (L29p) {Thermus thermophilus [TaxId: 274]}
Probab=23.52 E-value=17 Score=22.55 Aligned_cols=20 Identities=30% Similarity=0.411 Sum_probs=16.2
Q ss_pred HhcCCHHHHHHHHHHHHHHH
Q 028601 178 LEGLTEAELEALIEQVEEEK 197 (207)
Q Consensus 178 leeLtpEEle~L~aEIE~Ek 197 (207)
+.+||.+||++.+.|+.+|-
T Consensus 2 iR~ls~~eL~~~l~elk~el 21 (51)
T d2j0121 2 ARKLSPVELEKLVREKKREL 21 (51)
T ss_dssp CTTTHHHHHHHHHHHHHHHS
T ss_pred hhhCCHHHHHHHHHHHHHHH
Confidence 35799999999998888764
No 55
>d2lefa_ a.21.1.1 (A:) Lymphoid enhancer-binding factor, LEF1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=22.44 E-value=55 Score=21.00 Aligned_cols=28 Identities=18% Similarity=0.412 Sum_probs=22.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHh
Q 028601 171 DKVMQKRLEGLTEAELEALIEQVEEEKR 198 (207)
Q Consensus 171 ~avLQKRleeLtpEEle~L~aEIE~Ek~ 198 (207)
...|-+...+|||+|.+.-.++-++++.
T Consensus 34 sk~lg~~Wk~ls~~eK~~y~~~A~~~k~ 61 (86)
T d2lefa_ 34 NQILGRRWHALSREEQAKYYELARKERQ 61 (86)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 4567888999999999988776666554
No 56
>d1j46a_ a.21.1.1 (A:) SRY {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.34 E-value=55 Score=20.94 Aligned_cols=28 Identities=21% Similarity=0.215 Sum_probs=23.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHh
Q 028601 171 DKVMQKRLEGLTEAELEALIEQVEEEKR 198 (207)
Q Consensus 171 ~avLQKRleeLtpEEle~L~aEIE~Ek~ 198 (207)
...+-++..+||+||.+.-++.-++++.
T Consensus 36 sk~ig~~W~~L~~eeK~~y~~~A~~~k~ 63 (85)
T d1j46a_ 36 SKQLGYQWKMLTEAEKWPFFQEAQKLQA 63 (85)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHH
Confidence 5678889999999999998887776654
No 57
>d1mlda2 d.162.1.1 (A:145-313) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]}
Probab=22.06 E-value=29 Score=24.30 Aligned_cols=19 Identities=21% Similarity=0.232 Sum_probs=13.7
Q ss_pred cCCHHHHHHHHHHHHHHHh
Q 028601 180 GLTEAELEALIEQVEEEKR 198 (207)
Q Consensus 180 eLtpEEle~L~aEIE~Ek~ 198 (207)
+|+|+|+++|++-.++-|+
T Consensus 139 ~L~~~E~~~l~~s~~~lk~ 157 (169)
T d1mlda2 139 KISPFEEKMIAEAIPELKA 157 (169)
T ss_dssp SCCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHH
Confidence 5788888888877766443
No 58
>d2fbka1 a.4.5.28 (A:8-179) Transcriptional regulator DR1159 {Deinococcus radiodurans [TaxId: 1299]}
Probab=20.87 E-value=36 Score=24.08 Aligned_cols=70 Identities=17% Similarity=0.176 Sum_probs=43.6
Q ss_pred HHhCCCcccchhHHHHHHHhhhhhheee---------eeeeeeecCCccHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 028601 122 ELFGVDPLQAGNVVEVIVVLGLTLGWVS---------TYIFRVSNKEMTYAQQLRDYEDKVMQKRLEGLTEAELEALIEQ 192 (207)
Q Consensus 122 q~~GlD~~~AGiwsQ~lLVlGlvVgWv~---------SYLfRV~tk~MTY~qQ~kdYE~avLQKRleeLtpEEle~L~aE 192 (207)
..+|++.....-.+.-+-=-|+ |- .++.+.--+-....++......+..++-++.|++||++.|.+-
T Consensus 87 ~~l~i~~~tvsr~l~~Le~~Gl----V~r~~~~~DrR~~~i~LT~~G~~l~~~~~~~~~~~~~~~~~~l~~~E~~~l~~~ 162 (172)
T d2fbka1 87 ALAAISGPSTSNRIVRLLEKGL----IERREDERDRRSASIRLTPQGRALVTHLLPAHLATTQRVLAPLSAQEQRTLEEL 162 (172)
T ss_dssp HHCSCCSGGGSSHHHHHHHHTS----EECCC-------CCBEECHHHHHHHHHHHHHHHHHHHHHHTTSCTTHHHHHHHH
T ss_pred HHHCcCHhHHHHHHHHHHhCCC----eeeeccccchhhHHhhcCHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 3566666655555555444443 22 1223333333455666677778888888999999999988776
Q ss_pred HHH
Q 028601 193 VEE 195 (207)
Q Consensus 193 IE~ 195 (207)
+++
T Consensus 163 L~k 165 (172)
T d2fbka1 163 AGR 165 (172)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 59
>d1y7ta2 d.162.1.1 (A:154-332) Malate dehydrogenase {Thermus thermophilus [TaxId: 274]}
Probab=20.33 E-value=33 Score=24.06 Aligned_cols=16 Identities=13% Similarity=0.106 Sum_probs=10.8
Q ss_pred cCCHHHHHHHHHHHHH
Q 028601 180 GLTEAELEALIEQVEE 195 (207)
Q Consensus 180 eLtpEEle~L~aEIE~ 195 (207)
+|+|+|+++|++-+++
T Consensus 144 ~L~~~E~~~l~~s~~~ 159 (173)
T d1y7ta2 144 EINEFARKRMEITAQE 159 (173)
T ss_dssp CCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 4778887777655544
Done!