BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028603
(206 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q688X9|DI191_ORYSJ Protein DEHYDRATION-INDUCED 19 OS=Oryza sativa subsp. japonica
GN=DI19-1 PE=2 SV=1
Length = 226
Score = 222 bits (566), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 109/197 (55%), Positives = 139/197 (70%), Gaps = 8/197 (4%)
Query: 1 MDSDFWTSRLAAAKRQYTLQQHHHQSSQIDRLSIDDFEVEDDVRPDFPCPYCYEDFDIAS 60
MDS+ W SRLAAAKR Y Q H DR +++ +++++VRP+F CPYCYED D+ S
Sbjct: 1 MDSEHWISRLAAAKRFYAAQLGH-----ADRAGMEEVDMDEEVRPEFACPYCYEDHDVVS 55
Query: 61 LCSHLEDEHSCESKVTVCPICSVKVARDMLSHITLQHGHLFKLQRRRRLRRVAIPSSQAL 120
LC+HLE+EH E CPICS K+A+DML+HIT+QHG+LFK RRRLRR IP SQAL
Sbjct: 56 LCAHLEEEHPFEPHAAPCPICSDKIAKDMLNHITVQHGYLFK--NRRRLRRFVIPGSQAL 113
Query: 121 SLLGRDLREAHLQVLLGGSGYRSSN-ANISNAATDPFLSSLILNFPSSEAEEISKSVVTS 179
SLL RDLREAHLQVLLGG G+RS+N +N +N + DP LSS L+FP+S+ EE SK ++
Sbjct: 114 SLLSRDLREAHLQVLLGGGGHRSNNSSNTTNISADPLLSSFGLSFPTSDTEETSKPPISI 173
Query: 180 TEDTSAKSAAPTHMWKT 196
+D S P W +
Sbjct: 174 PDDASVIKETPAQPWDS 190
>sp|Q6H6E6|DI194_ORYSJ Protein DEHYDRATION-INDUCED 19 homolog 4 OS=Oryza sativa subsp.
japonica GN=DI19-4 PE=2 SV=1
Length = 245
Score = 190 bits (483), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 115/209 (55%), Positives = 142/209 (67%), Gaps = 15/209 (7%)
Query: 1 MDSDFWTSRLAAAKRQYTLQQHHHQSSQ-------------IDRLSIDDFEVEDDVRPDF 47
MDSD W SRL AAKRQY LQ+ + +DR DD E ED+VRPDF
Sbjct: 1 MDSDHWISRLMAAKRQYALQRAQNHHHATATATATAASHSHLDRYGYDDVEPEDEVRPDF 60
Query: 48 PCPYCYEDFDIASLCSHLEDEHSCESKVTVCPICSVKVARDMLSHITLQHGHLFKLQRRR 107
PCPYCYED DI SLC+HLEDEH ESKV CP+CS ++++D+L HITLQH +LF+LQR
Sbjct: 61 PCPYCYEDHDITSLCAHLEDEHPFESKVVACPVCSARISKDLLDHITLQHSYLFRLQRHH 120
Query: 108 RLRRVAIPSSQALSLLGRDLREAHLQVLLGGSGYRSSNANISNAATDPFLSSLILNFPSS 167
RLRRVA+PS+ ALSL GRDL+E +L+VLLG S RSS N +++ TD LSSL+LN SS
Sbjct: 121 RLRRVAVPSNHALSLGGRDLQETYLKVLLGNSS-RSSGTNAASSVTDSLLSSLVLNLSSS 179
Query: 168 EAEEISK-SVVTSTEDTSAKSAAPTHMWK 195
EAE+ +K S + E+ K P+ WK
Sbjct: 180 EAEDTAKFSALAVVENNWFKRTLPSKTWK 208
>sp|Q5QMP3|DI193_ORYSJ Protein DEHYDRATION-INDUCED 19 homolog 3 OS=Oryza sativa subsp.
japonica GN=DI19-3 PE=2 SV=1
Length = 246
Score = 175 bits (444), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 102/213 (47%), Positives = 125/213 (58%), Gaps = 18/213 (8%)
Query: 1 MDSDFWTSRLAAAKRQYTLQQHHHQSSQIDRLSIDDFEVEDDVR---------------P 45
MDS+ W S LAAAKR Y Q H + + E+EDD P
Sbjct: 1 MDSEHWISSLAAAKRFYAAQLGHVDDMAGIGMEEVEMEMEDDGEGMELELEMQLEEATWP 60
Query: 46 DFPCPYCYEDFDIASLCSHLEDEHSCESKVTVCPICSVKVARDMLSHITLQHGHLFKLQR 105
D CPYCYED DIASLC+HLE++H E + CPIC K+ RDML+HIT+QHG+LFK
Sbjct: 61 DVACPYCYEDHDIASLCAHLEEDHPYEPHTSPCPICFEKITRDMLNHITMQHGYLFK--S 118
Query: 106 RRRLRRVAIPSSQALSLLGRDLREAHLQVLLGGS-GYRSSNANISNAATDPFLSSLILNF 164
RR+RR IP SQALSLL RDLR+A LQ LLGG R SN +N + DP LSS L F
Sbjct: 119 GRRMRRFDIPESQALSLLSRDLRDAQLQALLGGGHRQRRSNTTATNISADPLLSSFGLGF 178
Query: 165 PSSEAEEISKSVVTSTEDTSAKSAAPTHMWKTR 197
+ ++EE SK+ V +DTS P W++R
Sbjct: 179 STLDSEERSKAPVPIPDDTSIHKDTPAQPWESR 211
>sp|Q84J70|DI193_ARATH Protein DEHYDRATION-INDUCED 19 homolog 3 OS=Arabidopsis thaliana
GN=DI19-3 PE=1 SV=1
Length = 223
Score = 136 bits (343), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 70/161 (43%), Positives = 103/161 (63%), Gaps = 5/161 (3%)
Query: 1 MDSDFWTSRLAAAKRQYTLQQHHHQSSQIDRLSIDDFEVEDDVRPDFPCPYCYEDFDIAS 60
MDSD W+ RLA+A R+Y L S L ++ + E++ R +F CP+C + FDI S
Sbjct: 1 MDSDSWSDRLASATRRYQLA---FPSRSDTFLGFEEIDGEEEFREEFACPFCSDYFDIVS 57
Query: 61 LCSHLEDEHSCESKVTVCPICSVKVARDMLSHITLQHGHLFKLQRRRRLRRVAIPSSQAL 120
LC H++++H E+K VCP+C+V+V DM++HITLQH ++FK+ R+R+ RR S L
Sbjct: 58 LCCHIDEDHPMEAKNGVCPVCAVRVGVDMVAHITLQHANIFKMHRKRKPRRGG--SYSTL 115
Query: 121 SLLGRDLREAHLQVLLGGSGYRSSNANISNAATDPFLSSLI 161
S+L R+ + + Q L GGS S+++ SN A DP LSS I
Sbjct: 116 SILRREFPDGNFQSLFGGSSCIVSSSSSSNVAADPLLSSFI 156
>sp|Q6NM26|DI196_ARATH Protein DEHYDRATION-INDUCED 19 homolog 6 OS=Arabidopsis thaliana
GN=DI19-6 PE=1 SV=1
Length = 222
Score = 129 bits (325), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 69/161 (42%), Positives = 105/161 (65%), Gaps = 6/161 (3%)
Query: 1 MDSDFWTSRLAAAKRQYTLQQHHHQSSQIDRLSIDDFEVEDDVRPDFPCPYCYEDFDIAS 60
MDSD W+ RLA+A R+Y L S + L ++ E EDD R ++ CP+C + FDI S
Sbjct: 1 MDSDSWSDRLASASRRYQLD---FLSRSDNFLGFEEIEGEDDFREEYACPFCSDYFDIVS 57
Query: 61 LCSHLEDEHSCESKVTVCPICSVKVARDMLSHITLQHGHLFKLQRRRRLRRVAIPSSQAL 120
LC H++++H ++K VCPIC+VKV+ DM++HITLQH ++FK+ R+R+ RR S L
Sbjct: 58 LCCHIDEDHPMDAKNGVCPICAVKVSSDMIAHITLQHANMFKVTRKRKSRRGGAQS--ML 115
Query: 121 SLLGRDLREAHLQVLLGGSGYRSSNANISNAATDPFLSSLI 161
S+L R+ + + Q L G+ R+ +++ ++ A DP LSS I
Sbjct: 116 SILKREFPDGNFQSLFEGT-SRAVSSSSASIAADPLLSSFI 155
>sp|Q5W794|DI192_ORYSJ Protein DEHYDRATION-INDUCED 19 homolog 2 OS=Oryza sativa subsp.
japonica GN=DI19-2 PE=2 SV=2
Length = 233
Score = 129 bits (324), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 63/122 (51%), Positives = 85/122 (69%), Gaps = 3/122 (2%)
Query: 47 FPCPYCYEDFDIASLCSHLEDEHSCESKVTVCPICSVKVARDMLSHITLQHGHLFKLQRR 106
+ CP+C EDFD + C H++DEH+ E+K VCPIC+ +V D++ H+T+QHG FK+QRR
Sbjct: 54 YNCPFCGEDFDFVAFCCHVDDEHAVEAKSGVCPICATRVGVDLIGHLTMQHGSYFKMQRR 113
Query: 107 RRLRRVAIPSSQALSLLGRDLREAHLQVLLGGSGYRSSNANISNAATDPFLSSLILNFPS 166
RR+R+++ S LSLL +DLR+ LQ LGGS Y S N AA DPFLSSLI + P
Sbjct: 114 RRVRKISSGSHSLLSLLRKDLRDGSLQSFLGGSSYVS---NPPAAAPDPFLSSLICSLPV 170
Query: 167 SE 168
+E
Sbjct: 171 AE 172
>sp|Q39083|DI191_ARATH Protein DEHYDRATION-INDUCED 19 OS=Arabidopsis thaliana GN=DI19-1
PE=1 SV=2
Length = 206
Score = 129 bits (323), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 62/131 (47%), Positives = 91/131 (69%), Gaps = 6/131 (4%)
Query: 32 LSIDDFEVEDDVRPDFPCPYCYEDFDIASLCSHLEDEHSCESKVTVCPICSVKVARDMLS 91
+ ++ + +DD + +F CP+C E +DI LC H++DEH+ ESK VCP+CS+KV D+++
Sbjct: 20 MGFEEIDGDDDFQEEFACPFCAESYDIIGLCCHIDDEHTLESKNAVCPVCSLKVGVDIVA 79
Query: 92 HITLQHGHLFKLQRRRRLRRVAIPSSQALSLLGRDLREAHLQVLLGGSGYRSSNANISNA 151
HITL HG LFKLQR+R+ R+ S+ LSLL ++LRE LQ LL G+ S N +++++
Sbjct: 80 HITLHHGSLFKLQRKRKSRKSGTNST--LSLLRKELREGDLQRLL---GFTSRNGSVASS 134
Query: 152 AT-DPFLSSLI 161
T DP LSS I
Sbjct: 135 VTPDPLLSSFI 145
>sp|Q9FJ17|DI197_ARATH Protein DEHYDRATION-INDUCED 19 homolog 7 OS=Arabidopsis thaliana
GN=DI19-7 PE=1 SV=2
Length = 211
Score = 125 bits (315), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 69/166 (41%), Positives = 99/166 (59%), Gaps = 15/166 (9%)
Query: 32 LSIDDFEVEDDVRPDFPCPYCYEDFDIASLCSHLEDEHSCESKVTVCPICSVKVARDMLS 91
L + D E EDD++ +F CP+C ++FDI LC H++ H E+K VCP+C+ KV D++
Sbjct: 28 LYLGDVEGEDDLKAEFMCPFCADEFDIVGLCCHIDVNHPVEAKNGVCPVCTKKVGLDIVG 87
Query: 92 HITLQHGHLFKLQRRRRLRRVAIPSSQALSLLGRDLREAHLQVLLGGSGYRSSNANISNA 151
HIT QHG++FK+QRRRRLR+ SS L+ L ++LREA+LQ L G S + S SN
Sbjct: 88 HITTQHGNVFKVQRRRRLRKGGY-SSTYLT-LKKELREANLQSLGGSSTFIPS----SNI 141
Query: 152 ATDPFLSSLILNFPSSEAEEISKSVVTSTEDTSAKSAAPTHMWKTR 197
+DP LSS + PS+ + TE S +P K++
Sbjct: 142 DSDPLLSSFMFKPPSA---------IPITEGDSVAQVSPKDTSKSK 178
>sp|Q8VXU6|DI194_ARATH Protein DEHYDRATION-INDUCED 19 homolog 4 OS=Arabidopsis thaliana
GN=DI19-4 PE=1 SV=1
Length = 224
Score = 110 bits (276), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 66/132 (50%), Positives = 90/132 (68%), Gaps = 5/132 (3%)
Query: 35 DDFEVEDDVRPDFPCPYCYEDFDIASLCSHLEDEHSCESKVTVCPICSVKVARDMLSHIT 94
+D E EDD++ +F CP+C EDFDI LC H+++EH E+K VCP+C+ +V D++ HIT
Sbjct: 35 EDLEGEDDLKAEFICPFCAEDFDIVGLCCHIDEEHPVEAKNGVCPVCTKRVGLDIVGHIT 94
Query: 95 LQHGHLFKLQRRRRLRRVAIPSSQALSLLGRDLREAHLQVLLGGSGYRSSNANISNAATD 154
QH + FK+QRRRRLRR S+ L ++LREA+LQ LLGGS +S+ NI +D
Sbjct: 95 TQHANFFKVQRRRRLRRGGYSSTYL--ALKKELREANLQSLLGGSSSFTSSTNID---SD 149
Query: 155 PFLSSLILNFPS 166
P LSS + N PS
Sbjct: 150 PLLSSFMFNSPS 161
>sp|O04259|DI195_ARATH Protein DEHYDRATION-INDUCED 19 homolog 5 OS=Arabidopsis thaliana
GN=DI19-5 PE=1 SV=2
Length = 214
Score = 77.4 bits (189), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 82/164 (50%), Gaps = 18/164 (10%)
Query: 36 DFEVEDDVRPDFPCPYCYEDFDIASLCSHLEDEHSCESKVTVCPICSVKVARDMLSHITL 95
+FE +D++ D+PCP+C +D+D+ LC H+++EH ++ +CP+CS +V M+ HIT
Sbjct: 32 EFEDDDEMAVDYPCPFCSDDYDLVELCHHIDEEHQLDANNGICPVCSRRVKMHMVDHITT 91
Query: 96 QHGHLFKLQRRRRLRRVAIPSSQALSLLGRDLREAHLQVLLGGSGYRSSNANISNAATDP 155
QH +FK R S A S R +LQ L+ S + S + DP
Sbjct: 92 QHRDVFK-------RLYKDESYSAFSPGTR----KYLQSLIDEP---LSTNHTSKSVLDP 137
Query: 156 FLSSLILNFPSSEAEEISK---SVVTSTEDTSAKSAAPTHMWKT 196
L S I N PS + ++ + S S ED S + W++
Sbjct: 138 LL-SFIYNPPSPKKSKLVQPDSSSEASMEDNSLIRDSTEKDWES 180
>sp|Q5JME8|DI195_ORYSJ Protein DEHYDRATION-INDUCED 19 homolog 5 OS=Oryza sativa subsp.
japonica GN=DI19-5 PE=2 SV=1
Length = 202
Score = 74.7 bits (182), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 72/135 (53%), Gaps = 15/135 (11%)
Query: 47 FPCPYCYEDFDIASLCSHLEDEHSCESKVTVCPICSVKVARDMLSHITLQHGHLFKLQRR 106
FPCP+CY + ++ +C+HL++EH +++ VCP+C+ + RDM +H +QH HL K R
Sbjct: 37 FPCPFCYIEVEVPFICNHLQEEHCFDTRNAVCPLCADNIGRDMGAHFRVQHSHLLK---R 93
Query: 107 RRLRRVAIPSSQALSLLGRDLREAHLQVLLGGSGYRSSNANISNAATDPFLSSLILNFPS 166
R+ R PSS + + + + + G Y +N + A DP LS I
Sbjct: 94 RKPSR---PSSSWPT--PSNNSDPYFE---GPPQYMMNNRTYQDPAPDPLLSQFIC---- 141
Query: 167 SEAEEISKSVVTSTE 181
S A+ + S T+TE
Sbjct: 142 SMAQTDTNSDNTNTE 156
>sp|Q8GWK1|DI192_ARATH Protein DEHYDRATION-INDUCED 19 homolog 2 OS=Arabidopsis thaliana
GN=DI19-2 PE=1 SV=1
Length = 221
Score = 71.2 bits (173), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 47/74 (63%)
Query: 38 EVEDDVRPDFPCPYCYEDFDIASLCSHLEDEHSCESKVTVCPICSVKVARDMLSHITLQH 97
EV+DD+ ++PCP+C D+D+ LC H+++EH E+ +CP+CS +V M+ HIT H
Sbjct: 38 EVDDDIAVEYPCPFCASDYDLVELCHHIDEEHRHEANNGICPVCSKRVKMHMVDHITSHH 97
Query: 98 GHLFKLQRRRRLRR 111
+ K +++ R
Sbjct: 98 RDVLKSEQKEMSYR 111
>sp|Q7XBA5|DI196_ORYSJ Protein DEHYDRATION-INDUCED 19 homolog 6 OS=Oryza sativa subsp.
japonica GN=DI19-6 PE=2 SV=1
Length = 208
Score = 61.2 bits (147), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 57/115 (49%), Gaps = 8/115 (6%)
Query: 47 FPCPYCYEDFDIASLCSHLEDEHSCESKVTVCPICSVKVARDMLSHITLQHGHLFKLQRR 106
PCP+CY + ++ LC HL++EH + K VCPIC+ + +D H +QH HL K R
Sbjct: 37 IPCPFCYIEVEVHFLCDHLQEEHCFDMKNAVCPICADNLDKDTDEHFRVQHSHLLK---R 93
Query: 107 RRLRRVAIPSSQALSLLGRDLREAHLQVLLGGSGYRSSNANISNAATDPFLSSLI 161
R+ + S A + G +++ + G + +++ DP LS I
Sbjct: 94 RKSSSFSCKPSSAAADKGSYEEDSYFEAPSHCMGRPA-----PDSSPDPLLSQFI 143
>sp|Q4U5R4|RN114_BOVIN RING finger protein 114 OS=Bos taurus GN=RNF114 PE=2 SV=1
Length = 230
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 44 RPDFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPICS 82
R FPCPYC E +FD L H + HS ++K VCPIC+
Sbjct: 140 RYTFPCPYCPEKNFDQEGLVEHCKLSHSTDTKSVVCPICA 179
>sp|Q6J2U6|RN114_RAT RING finger protein 114 OS=Rattus norvegicus GN=Rnf114 PE=2 SV=1
Length = 229
Score = 40.8 bits (94), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 44 RPDFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPICS 82
R FPCPYC E +FD L H + HS ++K VCPIC+
Sbjct: 139 RYTFPCPYCPEKNFDQEGLVEHCKLTHSTDTKSVVCPICA 178
>sp|Q9ET26|RN114_MOUSE RING finger protein 114 OS=Mus musculus GN=Rnf114 PE=2 SV=2
Length = 229
Score = 40.8 bits (94), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 47 FPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPICS 82
FPCPYC E +FD L H + HS ++K VCPIC+
Sbjct: 142 FPCPYCPEKNFDQEGLVEHCKLTHSTDTKSVVCPICA 178
>sp|Q6J1I8|RN114_PIG RING finger protein 114 OS=Sus scrofa GN=RNF114 PE=2 SV=1
Length = 228
Score = 40.8 bits (94), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 44 RPDFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPICS 82
R FPCPYC E +FD L H + HS ++K VCPIC+
Sbjct: 138 RYTFPCPYCPEKNFDQEGLVEHCKLVHSTDTKSVVCPICA 177
>sp|Q6GPB6|KCMF1_XENLA E3 ubiquitin-protein ligase KCMF1 OS=Xenopus laevis GN=kcmf1 PE=2
SV=1
Length = 381
Score = 40.0 bits (92), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 8/59 (13%)
Query: 47 FPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPICSV-------KVARDMLSHITLQH 97
F CPYC + + SL H+ EH+ S +CPIC+ V D +H+TL+H
Sbjct: 78 FTCPYCGKMGYTETSLQEHVTSEHAETSTEVICPICAALPGGDPNHVTDDFAAHLTLEH 136
>sp|Q9P0J7|KCMF1_HUMAN E3 ubiquitin-protein ligase KCMF1 OS=Homo sapiens GN=KCMF1 PE=1
SV=2
Length = 381
Score = 40.0 bits (92), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 8/59 (13%)
Query: 47 FPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPICSV-------KVARDMLSHITLQH 97
F CPYC + + SL H+ EH+ S +CPIC+ V D +H+TL+H
Sbjct: 78 FTCPYCGKMGYTETSLQEHVTSEHAETSTEVICPICAALPGGDPNHVTDDFAAHLTLEH 136
>sp|Q9Y508|RN114_HUMAN RING finger protein 114 OS=Homo sapiens GN=RNF114 PE=1 SV=1
Length = 228
Score = 40.0 bits (92), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 44 RPDFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPICS 82
R FPCPYC E +FD L H + HS ++K VCPIC+
Sbjct: 138 RYTFPCPYCPEKNFDQEGLVEHCKLFHSTDTKSVVCPICA 177
>sp|Q6J212|RN114_PANTR RING finger protein 114 OS=Pan troglodytes GN=RNF114 PE=2 SV=1
Length = 228
Score = 40.0 bits (92), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 20/40 (50%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 44 RPDFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPICS 82
R FPCPYC E +FD L H + HS ++K VCPIC+
Sbjct: 138 RYTFPCPYCPEKNFDQEGLVEHCKLFHSTDTKSVVCPICA 177
>sp|Q1LZE1|KCMF1_BOVIN E3 ubiquitin-protein ligase KCMF1 OS=Bos taurus GN=KCMF1 PE=2 SV=1
Length = 381
Score = 40.0 bits (92), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 8/59 (13%)
Query: 47 FPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPICSV-------KVARDMLSHITLQH 97
F CPYC + + SL H+ EH+ S +CPIC+ V D +H+TL+H
Sbjct: 78 FTCPYCGKMGYTETSLQEHVTSEHAETSTEVICPICAALPGGDPNHVTDDFAAHLTLEH 136
>sp|Q80UY2|KCMF1_MOUSE E3 ubiquitin-protein ligase KCMF1 OS=Mus musculus GN=Kcmf1 PE=2
SV=1
Length = 381
Score = 40.0 bits (92), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 8/59 (13%)
Query: 47 FPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPICSV-------KVARDMLSHITLQH 97
F CPYC + + SL H+ EH+ S +CPIC+ V D +H+TL+H
Sbjct: 78 FTCPYCGKMGYTETSLQEHVTSEHAETSTEVICPICAALPGGDPNHVTDDFAAHLTLEH 136
>sp|Q7T321|KCMF1_DANRE E3 ubiquitin-protein ligase KCMF1 OS=Danio rerio GN=kcmf1 PE=2 SV=1
Length = 383
Score = 39.7 bits (91), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 8/59 (13%)
Query: 47 FPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPICSV-------KVARDMLSHITLQH 97
F CPYC + + SL H+ EH+ S +CPIC+ V D +H+TL+H
Sbjct: 78 FTCPYCGKMGYTETSLQEHVTSEHAETSTEVICPICAALPGGDPNHVTDDFAAHLTLEH 136
>sp|Q8K083|ZN536_MOUSE Zinc finger protein 536 OS=Mus musculus GN=Znf536 PE=2 SV=1
Length = 1302
Score = 34.3 bits (77), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Query: 38 EVEDDVRPD--FPCPYCYEDFDIASLCSHLEDEHSCESKVTVCPICSVKVARDMLSHITL 95
++EDD R + +PCP C + F S+ S H+ E K CP C + A+ I L
Sbjct: 119 DIEDDARKNRKYPCPLCGKRFRFNSILSLHMRTHTGE-KPFKCPYCDHRAAQKGNLKIHL 177
Query: 96 QHGHLFKLQR-RRRLR 110
+ L L + R R+R
Sbjct: 178 RTHKLGNLGKGRGRVR 193
>sp|O15090|ZN536_HUMAN Zinc finger protein 536 OS=Homo sapiens GN=ZNF536 PE=1 SV=3
Length = 1300
Score = 34.3 bits (77), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Query: 38 EVEDDVRPD--FPCPYCYEDFDIASLCSHLEDEHSCESKVTVCPICSVKVARDMLSHITL 95
++EDD R + +PCP C + F S+ S H+ E K CP C + A+ I L
Sbjct: 119 DIEDDARKNRKYPCPLCGKRFRFNSILSLHMRTHTGE-KPFKCPYCDHRAAQKGNLKIHL 177
Query: 96 QHGHLFKLQR-RRRLR 110
+ L L + R R+R
Sbjct: 178 RTHKLGNLGKGRGRVR 193
>sp|O60315|ZEB2_HUMAN Zinc finger E-box-binding homeobox 2 OS=Homo sapiens GN=ZEB2 PE=1
SV=1
Length = 1214
Score = 32.3 bits (72), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 17/88 (19%)
Query: 40 EDDVRPDFP--------CPYCYEDFD-IASLCSHLEDEHSCESKVTVCPICS------VK 84
E+D+ P P CPYC + + SL H++ H + CP+CS +
Sbjct: 196 ENDLPPGTPDAFAQLLTCPYCDRGYKRLTSLKEHIKYRHEKNEENFSCPLCSYTFAYRTQ 255
Query: 85 VARDMLSHI--TLQHGHLFKLQRRRRLR 110
+ R M++H T QH L + R+ +
Sbjct: 256 LERHMVTHKPGTDQHQMLTQGAGNRKFK 283
>sp|Q9R0G7|ZEB2_MOUSE Zinc finger E-box-binding homeobox 2 OS=Mus musculus GN=Zeb2 PE=1
SV=2
Length = 1215
Score = 32.3 bits (72), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 39/88 (44%), Gaps = 17/88 (19%)
Query: 40 EDDVRPDFP--------CPYCYEDFD-IASLCSHLEDEHSCESKVTVCPICS------VK 84
E+D+ P P CPYC + + SL H++ H + CP+CS +
Sbjct: 196 ENDLPPGTPDAFAQLLTCPYCDRGYKRLTSLKEHIKYRHEKNEENFSCPLCSYTFAYRTQ 255
Query: 85 VARDMLSHI--TLQHGHLFKLQRRRRLR 110
+ R M++H T QH L + R+ +
Sbjct: 256 LERHMVTHKPGTDQHQMLTQGAGNRKFK 283
>sp|Q1L721|RN138_XENLA E3 ubiquitin-protein ligase RNF138 OS=Xenopus laevis GN=rnf138 PE=1
SV=1
Length = 222
Score = 32.0 bits (71), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 8/61 (13%)
Query: 45 PDFPCPYCYE-DFDIASLCSHLEDEHSCESKVTVCPICS-------VKVARDMLSHITLQ 96
P + CP C E + + SL H + H E VCPIC+ ++ ++++H+ +
Sbjct: 132 PKYKCPLCSEHNLNQRSLLEHCNNVHYYEEVEMVCPICATLPWGDPIQTTGNVIAHLNAR 191
Query: 97 H 97
H
Sbjct: 192 H 192
>sp|Q9H1K0|RBNS5_HUMAN Rabenosyn-5 OS=Homo sapiens GN=ZFYVE20 PE=1 SV=2
Length = 784
Score = 31.6 bits (70), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 31/63 (49%), Gaps = 8/63 (12%)
Query: 33 SIDDFEVEDDVRPDFPCPYCYEDFD-IASLCSHLEDEHSCESKVTVCPICSV----KVAR 87
S+DD +VR F CP C +D L SH E+EHS E + I S+ K A+
Sbjct: 3 SLDD---PGEVREGFLCPLCLKDLQSFYQLHSHYEEEHSGEDRDVKGQIKSLVQKAKKAK 59
Query: 88 DML 90
D L
Sbjct: 60 DRL 62
>sp|Q09452|YQ23_CAEEL Putative zinc finger protein C09F5.3 OS=Caenorhabditis elegans
GN=C09F5.3 PE=4 SV=2
Length = 359
Score = 31.2 bits (69), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 42/103 (40%), Gaps = 9/103 (8%)
Query: 49 CPYCYEDF-DIASLCSHLEDE-HSCESKVTVCPICSVKV----ARDMLSHITLQHGHLFK 102
C C + F D A H++ S S++ CPIC V + L H+T QH +
Sbjct: 121 CQQCEDTFEDFAQFAIHMKSHLSSVTSQLFFCPICPVGTPFRDKKSQLEHLTTQHLQIQV 180
Query: 103 LQRRRRLRRVAIPSSQALSLLGRDLREAHLQVLLGGSGYRSSN 145
Q + A PS QA S+ EAH + + + N
Sbjct: 181 TQHICSICDSAFPSPQAQSV---HFAEAHKKYSCTNCDFETEN 220
>sp|O16999|ZPR1_CAEEL Zinc finger protein ZPR1 homolog OS=Caenorhabditis elegans
GN=W03F9.1 PE=3 SV=2
Length = 455
Score = 30.8 bits (68), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 37/90 (41%), Gaps = 3/90 (3%)
Query: 32 LSIDDFEVEDDVRPDFPCPYCYEDFDIASLCSHLEDEHSCESKVTVCPICSVKVARDMLS 91
LS DD+E V D CP C ED + +C+ + + CP C K
Sbjct: 12 LSADDYEAAPIVV-DSVCPVCEEDGETRIMCTSIPYYRAVILMSFECPHCGHKNNEIQSG 70
Query: 92 HITLQHGHL--FKLQRRRRLRRVAIPSSQA 119
+HG L ++Q+ LRR + S A
Sbjct: 71 EAVQEHGTLIVLRVQKPEDLRRQLVKSEYA 100
>sp|A6VDE4|Y5760_PSEA7 UPF0061 protein PSPA7_5760 OS=Pseudomonas aeruginosa (strain PA7)
GN=PSPA7_5760 PE=3 SV=1
Length = 486
Score = 30.8 bits (68), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 38/87 (43%), Gaps = 16/87 (18%)
Query: 50 PYCY-EDFDIASLCSHLED--EHSCESKVTVC------------PICSVKVARDMLS-HI 93
PY + +DFD +C+H +D +S ++V + P+ V R L +
Sbjct: 265 PYAFLDDFDANHICNHSDDSGRYSFSNQVPIAHWNLAALAQALTPLVEVDELRASLELFL 324
Query: 94 TLQHGHLFKLQRRRRLRRVAIPSSQAL 120
L H L RRR VA+ + QAL
Sbjct: 325 PLYQAHYLDLMRRRLGLGVAVENDQAL 351
>sp|Q6J1I7|RN166_RAT RING finger protein 166 OS=Rattus norvegicus GN=Rnf166 PE=2 SV=1
Length = 237
Score = 30.4 bits (67), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 44 RPDFPCPYC-YEDFDIASLCSHLEDEHSCESKVTVCPICS 82
R F CPYC + D L H + H + VCPICS
Sbjct: 147 RSTFACPYCGARNLDQQELVKHCVESHRSDPNRVVCPICS 186
>sp|Q3U9F6|RN166_MOUSE RING finger protein 166 OS=Mus musculus GN=Rnf166 PE=2 SV=1
Length = 237
Score = 30.4 bits (67), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 44 RPDFPCPYC-YEDFDIASLCSHLEDEHSCESKVTVCPICS 82
R F CPYC + D L H + H + VCPICS
Sbjct: 147 RSTFACPYCGARNLDQQELVKHCVESHRSDPNRVVCPICS 186
>sp|Q96A37|RN166_HUMAN RING finger protein 166 OS=Homo sapiens GN=RNF166 PE=2 SV=1
Length = 237
Score = 30.4 bits (67), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 44 RPDFPCPYC-YEDFDIASLCSHLEDEHSCESKVTVCPICS 82
R F CPYC + D L H + H + VCPICS
Sbjct: 147 RSTFACPYCGARNLDQQELVKHCVESHRSDPNRVVCPICS 186
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.130 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,496,377
Number of Sequences: 539616
Number of extensions: 2581865
Number of successful extensions: 7470
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 7397
Number of HSP's gapped (non-prelim): 85
length of query: 206
length of database: 191,569,459
effective HSP length: 112
effective length of query: 94
effective length of database: 131,132,467
effective search space: 12326451898
effective search space used: 12326451898
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)