Query 028605
Match_columns 206
No_of_seqs 132 out of 1755
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 14:07:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028605.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028605hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0034 Ca2+/calmodulin-depend 99.9 1.4E-24 3E-29 164.9 16.4 164 16-185 1-186 (187)
2 KOG0044 Ca2+ sensor (EF-Hand s 99.9 1.5E-23 3.3E-28 159.3 14.4 156 28-184 9-185 (193)
3 COG5126 FRQ1 Ca2+-binding prot 99.9 9.4E-22 2E-26 144.9 13.1 130 36-176 8-158 (160)
4 KOG0038 Ca2+-binding kinase in 99.8 1.5E-19 3.2E-24 128.8 11.2 160 16-183 1-186 (189)
5 KOG0027 Calmodulin and related 99.8 3.9E-18 8.4E-23 126.7 13.3 123 42-174 2-149 (151)
6 PTZ00183 centrin; Provisional 99.7 6.5E-17 1.4E-21 120.4 14.3 128 40-177 9-157 (158)
7 PTZ00184 calmodulin; Provision 99.7 5.2E-16 1.1E-20 114.1 14.1 124 41-174 4-148 (149)
8 KOG0028 Ca2+-binding protein ( 99.7 1.7E-15 3.6E-20 109.9 12.1 126 39-174 24-170 (172)
9 KOG0031 Myosin regulatory ligh 99.5 3.4E-13 7.3E-18 97.3 13.0 124 40-173 24-164 (171)
10 KOG0037 Ca2+-binding protein, 99.5 3.8E-13 8.3E-18 102.6 10.4 137 47-200 56-217 (221)
11 KOG0036 Predicted mitochondria 99.4 3E-12 6.5E-17 105.8 11.6 134 42-198 8-163 (463)
12 KOG0030 Myosin essential light 99.4 4E-12 8.6E-17 90.3 10.0 122 41-173 4-150 (152)
13 PF13499 EF-hand_7: EF-hand do 99.4 1.9E-12 4.1E-17 82.5 7.7 66 103-172 1-66 (66)
14 KOG0027 Calmodulin and related 99.3 2.5E-11 5.5E-16 90.1 11.7 123 65-194 8-130 (151)
15 COG5126 FRQ1 Ca2+-binding prot 99.2 4.1E-11 9E-16 88.6 8.3 113 51-174 8-120 (160)
16 PTZ00184 calmodulin; Provision 99.2 4.1E-10 8.9E-15 82.5 11.4 101 66-174 12-112 (149)
17 PTZ00183 centrin; Provisional 99.2 1E-09 2.2E-14 81.4 12.6 101 66-174 18-118 (158)
18 PLN02964 phosphatidylserine de 99.2 5E-10 1.1E-14 99.5 12.4 102 26-130 119-243 (644)
19 KOG0044 Ca2+ sensor (EF-Hand s 99.1 8.4E-10 1.8E-14 84.3 10.7 107 66-180 27-134 (193)
20 cd05022 S-100A13 S-100A13: S-1 99.1 4.3E-10 9.3E-15 75.7 7.4 67 102-175 8-76 (89)
21 KOG0028 Ca2+-binding protein ( 99.0 6.8E-09 1.5E-13 75.7 10.8 122 65-197 33-154 (172)
22 cd05027 S-100B S-100B: S-100B 99.0 3.1E-09 6.6E-14 71.6 8.2 69 102-174 8-79 (88)
23 PLN02964 phosphatidylserine de 99.0 7.8E-09 1.7E-13 92.0 12.2 123 39-175 118-244 (644)
24 smart00027 EH Eps15 homology d 99.0 5.4E-09 1.2E-13 71.6 8.3 86 100-201 8-93 (96)
25 cd05026 S-100Z S-100Z: S-100Z 98.9 7.1E-09 1.5E-13 70.6 8.5 71 102-176 10-83 (93)
26 KOG4223 Reticulocalbin, calume 98.9 1.2E-08 2.6E-13 82.4 10.8 122 46-176 75-230 (325)
27 KOG0377 Protein serine/threoni 98.9 3.5E-08 7.5E-13 82.7 13.0 120 49-174 465-615 (631)
28 cd05025 S-100A1 S-100A1: S-100 98.9 1.7E-08 3.7E-13 68.6 9.3 74 100-177 7-83 (92)
29 cd05031 S-100A10_like S-100A10 98.9 1.2E-08 2.5E-13 69.7 8.2 72 101-176 7-81 (94)
30 PF13499 EF-hand_7: EF-hand do 98.9 6.8E-09 1.5E-13 65.9 6.0 61 67-127 2-65 (66)
31 cd05029 S-100A6 S-100A6: S-100 98.8 3E-08 6.5E-13 66.7 8.4 68 103-175 11-80 (88)
32 KOG0037 Ca2+-binding protein, 98.8 5.5E-08 1.2E-12 74.6 10.5 96 65-174 57-152 (221)
33 cd00252 SPARC_EC SPARC_EC; ext 98.8 1.8E-08 4E-13 71.1 6.9 64 99-174 45-108 (116)
34 cd00213 S-100 S-100: S-100 dom 98.8 8E-08 1.7E-12 64.6 8.7 71 101-175 7-80 (88)
35 cd00052 EH Eps15 homology doma 98.8 4.7E-08 1E-12 61.9 7.0 62 105-176 2-63 (67)
36 cd05023 S-100A11 S-100A11: S-1 98.7 1.3E-07 2.8E-12 63.7 8.4 71 101-175 8-81 (89)
37 cd00051 EFh EF-hand, calcium b 98.7 1.2E-07 2.7E-12 58.2 7.4 61 104-172 2-62 (63)
38 PF13833 EF-hand_8: EF-hand do 98.7 8.2E-08 1.8E-12 58.4 6.2 52 115-174 1-53 (54)
39 KOG4223 Reticulocalbin, calume 98.6 2E-07 4.2E-12 75.5 8.5 116 44-169 159-300 (325)
40 KOG0031 Myosin regulatory ligh 98.6 4.9E-07 1.1E-11 65.7 8.8 129 51-196 20-148 (171)
41 KOG4666 Predicted phosphate ac 98.6 2.4E-07 5.2E-12 74.9 7.2 104 70-182 264-367 (412)
42 KOG0030 Myosin essential light 98.5 1.8E-06 3.9E-11 61.7 10.2 105 65-175 11-117 (152)
43 cd05022 S-100A13 S-100A13: S-1 98.5 6.8E-07 1.5E-11 60.2 7.3 65 67-131 10-76 (89)
44 KOG0036 Predicted mitochondria 98.4 2.9E-06 6.4E-11 70.8 11.3 99 63-174 12-110 (463)
45 KOG2562 Protein phosphatase 2 98.4 1.1E-06 2.4E-11 74.2 8.7 127 41-170 271-420 (493)
46 cd00051 EFh EF-hand, calcium b 98.4 1.4E-06 3.1E-11 53.3 7.1 61 67-128 2-62 (63)
47 PF00036 EF-hand_1: EF hand; 98.4 3.5E-07 7.6E-12 48.3 3.2 28 103-130 1-28 (29)
48 smart00027 EH Eps15 homology d 98.4 2.8E-06 6.1E-11 58.0 8.6 70 69-141 14-84 (96)
49 KOG0034 Ca2+/calmodulin-depend 98.4 4.2E-06 9E-11 64.0 10.3 93 70-174 38-132 (187)
50 cd05027 S-100B S-100B: S-100B 98.4 2.6E-06 5.5E-11 57.3 8.0 64 67-131 10-80 (88)
51 PF14658 EF-hand_9: EF-hand do 98.4 2.1E-06 4.6E-11 53.9 6.8 61 106-174 2-64 (66)
52 PF13833 EF-hand_8: EF-hand do 98.4 1.7E-06 3.7E-11 52.5 6.2 52 78-129 1-52 (54)
53 cd00052 EH Eps15 homology doma 98.4 3.4E-06 7.3E-11 53.2 7.7 60 69-131 3-62 (67)
54 cd05030 calgranulins Calgranul 98.3 2.5E-06 5.4E-11 57.4 7.1 66 102-174 8-79 (88)
55 KOG2643 Ca2+ binding protein, 98.3 1E-06 2.2E-11 73.9 5.7 94 77-175 211-315 (489)
56 cd05026 S-100Z S-100Z: S-100Z 98.3 5.1E-06 1.1E-10 56.5 7.9 62 70-131 15-82 (93)
57 cd00213 S-100 S-100: S-100 dom 98.3 5.8E-06 1.3E-10 55.4 7.6 65 67-131 10-80 (88)
58 KOG0040 Ca2+-binding actin-bun 98.3 1E-05 2.2E-10 76.6 11.1 74 38-128 2243-2322(2399)
59 cd05031 S-100A10_like S-100A10 98.2 8.8E-06 1.9E-10 55.3 7.9 64 67-130 10-79 (94)
60 cd05025 S-100A1 S-100A1: S-100 98.2 1E-05 2.2E-10 54.8 8.1 66 66-131 10-81 (92)
61 cd05029 S-100A6 S-100A6: S-100 98.2 1.1E-05 2.4E-10 54.2 7.8 62 70-131 15-80 (88)
62 KOG4251 Calcium binding protei 98.2 5.4E-06 1.2E-10 64.9 6.3 118 46-172 99-262 (362)
63 cd00252 SPARC_EC SPARC_EC; ext 98.1 9.3E-06 2E-10 57.4 6.7 58 66-128 49-106 (116)
64 KOG2643 Ca2+ binding protein, 98.1 1.6E-05 3.5E-10 66.9 9.1 82 81-174 372-453 (489)
65 PF00036 EF-hand_1: EF hand; 98.1 3.2E-06 6.9E-11 44.5 3.3 27 148-174 2-28 (29)
66 KOG0751 Mitochondrial aspartat 98.1 2.4E-05 5.3E-10 66.8 9.9 102 70-174 79-207 (694)
67 PRK12309 transaldolase/EF-hand 98.1 1.8E-05 3.9E-10 67.2 8.2 60 94-174 326-385 (391)
68 KOG0041 Predicted Ca2+-binding 98.0 1.9E-05 4.2E-10 60.0 7.0 67 100-174 97-163 (244)
69 cd05023 S-100A11 S-100A11: S-1 98.0 4.5E-05 9.7E-10 51.4 7.8 62 70-131 14-81 (89)
70 cd05030 calgranulins Calgranul 98.0 6.4E-05 1.4E-09 50.5 8.4 62 70-131 13-80 (88)
71 PF13405 EF-hand_6: EF-hand do 98.0 8.9E-06 1.9E-10 43.5 3.1 27 103-129 1-27 (31)
72 cd05024 S-100A10 S-100A10: A s 97.9 2.6E-05 5.6E-10 52.4 5.3 68 103-175 9-77 (91)
73 KOG4065 Uncharacterized conser 97.9 4.7E-05 1E-09 52.8 6.2 66 106-171 71-142 (144)
74 PF14658 EF-hand_9: EF-hand do 97.9 6.8E-05 1.5E-09 47.1 6.5 60 70-129 3-63 (66)
75 PF13202 EF-hand_5: EF hand; P 97.8 2.6E-05 5.7E-10 39.5 3.0 24 104-127 1-24 (25)
76 PRK12309 transaldolase/EF-hand 97.8 0.00013 2.9E-09 62.0 8.7 55 65-133 334-388 (391)
77 PF12763 EF-hand_4: Cytoskelet 97.7 0.00045 9.7E-09 47.8 8.9 88 99-201 7-94 (104)
78 PF13202 EF-hand_5: EF hand; P 97.6 8.1E-05 1.8E-09 37.7 3.1 24 149-172 2-25 (25)
79 KOG0377 Protein serine/threoni 97.6 0.0002 4.3E-09 60.7 6.8 59 70-128 552-613 (631)
80 PF14788 EF-hand_10: EF hand; 97.5 0.00055 1.2E-08 40.7 5.9 50 81-131 1-50 (51)
81 PF10591 SPARC_Ca_bdg: Secrete 97.5 4.4E-05 9.6E-10 53.7 1.0 62 99-170 51-112 (113)
82 KOG0041 Predicted Ca2+-binding 97.4 0.0017 3.7E-08 49.6 9.2 100 66-170 100-199 (244)
83 PF13405 EF-hand_6: EF-hand do 97.3 0.00035 7.6E-09 37.2 3.1 27 148-174 2-28 (31)
84 KOG0040 Ca2+-binding actin-bun 97.1 0.0021 4.6E-08 61.6 8.5 66 103-172 2254-2322(2399)
85 KOG0751 Mitochondrial aspartat 97.1 0.0084 1.8E-07 51.8 10.6 92 73-174 44-136 (694)
86 cd05024 S-100A10 S-100A10: A s 97.0 0.0055 1.2E-07 41.2 7.4 53 79-131 21-77 (91)
87 KOG4251 Calcium binding protei 97.0 0.0014 3.1E-08 51.6 4.9 91 82-172 216-307 (362)
88 PF09069 EF-hand_3: EF-hand; 96.8 0.0096 2.1E-07 39.9 6.9 79 101-182 2-83 (90)
89 PF14788 EF-hand_10: EF hand; 96.8 0.0062 1.3E-07 36.2 5.3 48 119-174 2-49 (51)
90 PF12763 EF-hand_4: Cytoskelet 96.7 0.0011 2.4E-08 45.9 2.1 58 70-131 15-72 (104)
91 smart00054 EFh EF-hand, calciu 96.4 0.0061 1.3E-07 30.4 3.6 26 149-174 3-28 (29)
92 smart00054 EFh EF-hand, calciu 96.4 0.0036 7.9E-08 31.3 2.6 26 104-129 2-27 (29)
93 KOG0038 Ca2+-binding kinase in 96.3 0.022 4.8E-07 41.5 6.8 59 70-128 113-175 (189)
94 KOG0046 Ca2+-binding actin-bun 96.1 0.023 5.1E-07 49.4 7.2 67 103-175 20-86 (627)
95 KOG3555 Ca2+-binding proteogly 96.1 0.011 2.3E-07 48.9 4.9 65 99-175 247-311 (434)
96 PF10591 SPARC_Ca_bdg: Secrete 95.9 0.01 2.2E-07 41.7 3.7 60 64-126 53-112 (113)
97 PF09279 EF-hand_like: Phospho 95.8 0.06 1.3E-06 35.3 6.8 67 104-174 2-69 (83)
98 KOG4347 GTPase-activating prot 95.8 0.016 3.5E-07 51.5 5.0 92 31-124 487-612 (671)
99 KOG1029 Endocytic adaptor prot 95.0 0.17 3.6E-06 46.3 8.5 62 103-174 196-257 (1118)
100 KOG0039 Ferric reductase, NADH 94.9 0.11 2.3E-06 47.5 7.4 96 79-182 2-97 (646)
101 KOG0046 Ca2+-binding actin-bun 94.7 0.18 4E-06 44.1 7.9 73 39-129 10-84 (627)
102 KOG0169 Phosphoinositide-speci 94.6 0.24 5.2E-06 45.1 8.7 116 67-196 138-253 (746)
103 KOG4578 Uncharacterized conser 94.5 0.027 5.9E-07 46.3 2.5 68 103-177 334-401 (421)
104 KOG0169 Phosphoinositide-speci 94.2 0.87 1.9E-05 41.7 11.3 124 42-174 130-274 (746)
105 PLN02952 phosphoinositide phos 94.1 0.66 1.4E-05 41.9 10.4 93 78-174 13-110 (599)
106 KOG2562 Protein phosphatase 2 93.9 0.32 7E-06 42.0 7.6 99 70-170 144-249 (493)
107 KOG0035 Ca2+-binding actin-bun 93.4 0.38 8.2E-06 44.9 7.8 59 70-128 752-814 (890)
108 PF09279 EF-hand_like: Phospho 92.0 0.37 8E-06 31.5 4.5 61 67-128 2-67 (83)
109 KOG4286 Dystrophin-like protei 91.0 0.58 1.3E-05 42.8 5.8 109 70-182 475-588 (966)
110 KOG4578 Uncharacterized conser 89.8 0.27 5.7E-06 40.7 2.5 59 70-128 338-396 (421)
111 KOG3866 DNA-binding protein of 89.7 1.6 3.5E-05 36.0 6.8 70 105-174 247-324 (442)
112 KOG4347 GTPase-activating prot 89.3 1.1 2.4E-05 40.3 6.1 78 82-168 535-612 (671)
113 KOG4666 Predicted phosphate ac 88.4 1.1 2.5E-05 37.1 5.2 84 79-174 241-324 (412)
114 KOG1955 Ral-GTPase effector RA 87.9 0.61 1.3E-05 40.7 3.5 28 39-68 222-249 (737)
115 PF05042 Caleosin: Caleosin re 87.3 1.9 4.1E-05 32.5 5.4 30 101-130 95-124 (174)
116 KOG4301 Beta-dystrobrevin [Cyt 87.0 4.4 9.5E-05 33.9 7.8 120 70-196 115-240 (434)
117 KOG1955 Ral-GTPase effector RA 86.1 2.3 5E-05 37.3 6.0 63 102-174 231-293 (737)
118 KOG4065 Uncharacterized conser 85.9 3 6.5E-05 29.3 5.4 58 70-127 72-142 (144)
119 PF14513 DAG_kinase_N: Diacylg 85.7 6.1 0.00013 28.8 7.2 70 40-115 6-82 (138)
120 KOG0998 Synaptic vesicle prote 83.6 1.1 2.4E-05 42.3 3.3 123 41-176 122-347 (847)
121 PF05042 Caleosin: Caleosin re 82.8 3.1 6.6E-05 31.4 4.7 35 146-180 96-130 (174)
122 KOG3866 DNA-binding protein of 82.8 2.3 4.9E-05 35.1 4.3 82 43-127 225-321 (442)
123 KOG2243 Ca2+ release channel ( 82.6 2.7 5.8E-05 41.5 5.2 59 107-174 4062-4120(5019)
124 KOG1265 Phospholipase C [Lipid 80.0 16 0.00035 34.6 9.1 85 82-174 205-299 (1189)
125 KOG0035 Ca2+-binding actin-bun 78.3 6.9 0.00015 36.9 6.4 72 102-177 747-819 (890)
126 PF08726 EFhand_Ca_insen: Ca2+ 77.2 2.9 6.3E-05 26.6 2.6 29 99-128 3-31 (69)
127 TIGR01848 PHA_reg_PhaR polyhyd 75.2 20 0.00042 24.8 6.4 70 109-182 10-85 (107)
128 KOG1707 Predicted Ras related/ 73.7 11 0.00023 34.0 6.1 35 145-179 314-348 (625)
129 KOG3555 Ca2+-binding proteogly 71.7 5.6 0.00012 33.3 3.7 53 70-127 255-307 (434)
130 PF09068 EF-hand_2: EF hand; 71.2 35 0.00075 24.4 8.2 93 81-173 14-124 (127)
131 KOG1029 Endocytic adaptor prot 70.2 6 0.00013 36.7 3.8 60 67-129 197-256 (1118)
132 PF05517 p25-alpha: p25-alpha 69.1 19 0.00041 26.6 5.8 59 111-174 11-69 (154)
133 KOG4004 Matricellular protein 65.7 3.6 7.9E-05 31.7 1.4 57 106-172 191-248 (259)
134 KOG0042 Glycerol-3-phosphate d 64.9 16 0.00035 32.9 5.3 64 103-174 594-657 (680)
135 PF00427 PBS_linker_poly: Phyc 63.9 19 0.00041 25.9 4.7 24 160-183 42-65 (131)
136 KOG2557 Uncharacterized conser 62.6 99 0.0021 26.5 10.2 54 79-133 72-125 (427)
137 cd07313 terB_like_2 tellurium 62.1 45 0.00097 22.3 6.9 83 40-127 14-97 (104)
138 PF08976 DUF1880: Domain of un 61.3 7.8 0.00017 27.2 2.3 32 139-174 4-35 (118)
139 PF09068 EF-hand_2: EF hand; 59.9 25 0.00055 25.1 4.8 26 104-129 99-124 (127)
140 PF12174 RST: RCD1-SRO-TAF4 (R 59.9 11 0.00024 24.0 2.6 48 80-131 7-54 (70)
141 PF05872 DUF853: Bacterial pro 58.8 46 0.00099 29.4 6.9 116 63-195 126-247 (502)
142 PLN02230 phosphoinositide phos 57.0 69 0.0015 29.3 8.0 74 99-174 26-102 (598)
143 PF04876 Tenui_NCP: Tenuivirus 56.6 78 0.0017 23.3 8.2 48 137-187 126-173 (175)
144 PF14513 DAG_kinase_N: Diacylg 55.8 34 0.00074 24.9 4.9 68 80-157 6-80 (138)
145 COG5394 Uncharacterized protei 54.2 29 0.00063 25.9 4.3 21 109-129 19-39 (193)
146 KOG0042 Glycerol-3-phosphate d 50.0 42 0.0009 30.4 5.4 73 41-131 586-658 (680)
147 PF08414 NADPH_Ox: Respiratory 47.8 88 0.0019 21.4 6.3 61 104-174 32-92 (100)
148 PLN02952 phosphoinositide phos 47.7 1.9E+02 0.0041 26.5 9.3 86 41-129 16-109 (599)
149 PLN02223 phosphoinositide phos 46.7 1.4E+02 0.003 27.0 8.1 75 99-174 13-92 (537)
150 PF11829 DUF3349: Protein of u 46.7 76 0.0017 21.5 5.2 65 82-150 20-84 (96)
151 PF07879 PHB_acc_N: PHB/PHA ac 43.9 20 0.00043 22.3 1.8 21 109-129 10-30 (64)
152 PLN02508 magnesium-protoporphy 43.9 1.1E+02 0.0024 25.7 6.6 16 111-126 88-103 (357)
153 PF04614 Pex19: Pex19 protein 43.3 5.6 0.00012 31.9 -0.8 56 145-201 100-159 (248)
154 PF00404 Dockerin_1: Dockerin 42.6 37 0.00081 16.1 2.3 16 112-127 1-16 (21)
155 PF05517 p25-alpha: p25-alpha 40.7 1.5E+02 0.0032 21.9 9.7 59 79-137 16-76 (154)
156 KOG1707 Predicted Ras related/ 40.6 52 0.0011 29.9 4.5 89 102-194 195-294 (625)
157 KOG2243 Ca2+ release channel ( 38.7 56 0.0012 33.2 4.6 56 70-127 4062-4117(5019)
158 PRK08570 rpl19e 50S ribosomal 38.3 39 0.00085 24.9 2.9 42 4-52 3-46 (150)
159 COG2147 RPL19A Ribosomal prote 37.2 39 0.00085 24.8 2.7 42 4-52 3-46 (150)
160 COG3793 TerB Tellurite resista 36.9 1.3E+02 0.0028 22.1 5.4 66 115-180 37-104 (144)
161 PF02864 STAT_bind: STAT prote 36.4 73 0.0016 25.8 4.5 53 118-170 178-231 (254)
162 KOG4403 Cell surface glycoprot 35.8 82 0.0018 27.5 4.8 53 77-129 40-95 (575)
163 cd02977 ArsC_family Arsenate R 33.8 87 0.0019 21.0 4.1 55 117-180 34-91 (105)
164 PF01280 Ribosomal_L19e: Ribos 33.4 59 0.0013 24.0 3.2 41 5-52 3-45 (148)
165 PF03979 Sigma70_r1_1: Sigma-7 32.8 81 0.0018 20.4 3.6 28 115-148 18-45 (82)
166 PF12872 OST-HTH: OST-HTH/LOTU 32.1 1.3E+02 0.0027 18.6 5.0 36 161-196 22-59 (74)
167 PTZ00436 60S ribosomal protein 31.7 53 0.0012 27.1 3.0 42 4-52 3-46 (357)
168 PF05099 TerB: Tellurite resis 31.6 1.6E+02 0.0035 20.6 5.4 74 79-159 37-111 (140)
169 COG4359 Uncharacterized conser 31.1 2.5E+02 0.0053 21.8 6.3 80 76-175 8-88 (220)
170 KOG3442 Uncharacterized conser 30.9 1E+02 0.0022 22.0 3.9 43 116-163 53-95 (132)
171 PRK13344 spxA transcriptional 30.1 84 0.0018 22.5 3.6 57 117-180 35-91 (132)
172 PLN02228 Phosphoinositide phos 29.9 2.7E+02 0.0058 25.4 7.4 67 99-174 21-92 (567)
173 PF09373 PMBR: Pseudomurein-bi 29.2 86 0.0019 16.5 2.7 21 160-180 2-22 (33)
174 cd07313 terB_like_2 tellurium 28.0 1.8E+02 0.004 19.2 6.2 81 78-167 12-93 (104)
175 PRK13654 magnesium-protoporphy 27.7 2.5E+02 0.0053 23.8 6.2 61 66-127 46-108 (355)
176 PF09824 ArsR: ArsR transcript 27.5 2.4E+02 0.0052 21.0 5.5 75 100-185 70-144 (160)
177 PF04558 tRNA_synt_1c_R1: Glut 27.1 73 0.0016 23.8 2.9 51 99-154 82-132 (164)
178 KOG2871 Uncharacterized conser 27.1 53 0.0012 28.1 2.3 32 100-131 307-338 (449)
179 PF03705 CheR_N: CheR methyltr 27.1 1.4E+02 0.003 17.4 5.9 51 121-176 2-55 (57)
180 PLN02222 phosphoinositide phos 26.5 3.3E+02 0.0071 25.0 7.3 67 100-174 23-90 (581)
181 cd06404 PB1_aPKC PB1 domain is 26.2 1.7E+02 0.0037 19.3 4.1 17 80-96 18-34 (83)
182 PF12486 DUF3702: ImpA domain 26.1 1.7E+02 0.0036 21.6 4.6 37 104-140 71-107 (148)
183 PF11569 Homez: Homeodomain le 25.9 1.1E+02 0.0024 18.5 3.0 24 30-53 25-48 (56)
184 PF09682 Holin_LLH: Phage holi 25.6 2.3E+02 0.0049 19.4 6.2 50 107-156 56-105 (108)
185 cd03032 ArsC_Spx Arsenate Redu 25.1 2.3E+02 0.005 19.4 5.3 57 117-180 35-91 (115)
186 PTZ00097 60S ribosomal protein 24.5 92 0.002 23.6 3.0 41 5-52 2-44 (175)
187 cd00481 Ribosomal_L19e Ribosom 24.4 98 0.0021 22.7 3.0 39 7-52 3-43 (145)
188 KOG0998 Synaptic vesicle prote 24.4 25 0.00054 33.5 -0.0 62 68-132 286-347 (847)
189 PF04282 DUF438: Family of unk 24.0 1.5E+02 0.0034 18.8 3.6 18 163-180 46-63 (71)
190 cd03034 ArsC_ArsC Arsenate Red 23.9 1.9E+02 0.0041 19.8 4.4 54 117-180 34-90 (112)
191 cd03035 ArsC_Yffb Arsenate Red 23.7 1.2E+02 0.0026 20.6 3.3 52 118-180 35-89 (105)
192 cd04790 HTH_Cfa-like_unk Helix 23.1 97 0.0021 23.3 3.0 53 8-60 96-148 (172)
193 cd01418 Ribosomal_L19e_A Ribos 22.8 1.1E+02 0.0025 22.3 3.1 39 7-52 3-43 (145)
194 PRK10026 arsenate reductase; P 22.6 1.5E+02 0.0033 21.5 3.8 56 118-180 38-93 (141)
195 PF08349 DUF1722: Protein of u 22.4 2.7E+02 0.0059 19.2 5.9 50 121-174 48-97 (117)
196 PF06992 Phage_lambda_P: Repli 22.3 2.9E+02 0.0062 22.1 5.5 37 157-195 94-131 (233)
197 PF05920 Homeobox_KN: Homeobox 20.9 60 0.0013 18.0 1.1 26 27-52 10-35 (40)
198 PF08557 Lipid_DES: Sphingolip 20.8 81 0.0018 17.6 1.6 16 169-184 20-35 (39)
199 PF11363 DUF3164: Protein of u 20.4 3.8E+02 0.0082 20.7 5.8 59 132-194 109-168 (195)
200 PF01023 S_100: S-100/ICaBP ty 20.1 1.8E+02 0.004 16.4 4.8 30 145-174 6-36 (44)
201 PF08672 APC2: Anaphase promot 20.1 2.2E+02 0.0048 17.3 3.9 32 99-131 12-45 (60)
202 cd03036 ArsC_like Arsenate Red 20.1 1.6E+02 0.0036 20.0 3.5 57 118-180 35-92 (111)
No 1
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=99.93 E-value=1.4e-24 Score=164.92 Aligned_cols=164 Identities=46% Similarity=0.717 Sum_probs=144.2
Q ss_pred hccccCCCCCCCCCCCcHHHHHhhcC----CCHHHHHHHHHHHHhhccCCcCccHHHH-----------------HHhHH
Q 028605 16 VNCCDADLYKQPRGLEDPEALARETV----FSVSEIEALYELFKKISSAVIDDGLINK-----------------VFDLF 74 (206)
Q Consensus 16 m~~~~s~~~~~~~~~~~~~~l~~~~~----~s~~e~~~l~~~F~~~d~~~~~~g~i~~-----------------lf~~~ 74 (206)
|||..|.... .+.++.+...+. +|..|+.+++.+|.+++.+. +.|++++ ++..+
T Consensus 1 Mg~~~s~~~~----~~~~~~~~~~~~~~~~fs~~EI~~L~~rF~kl~~~~-~~g~lt~eef~~i~~~~~Np~~~rI~~~f 75 (187)
T KOG0034|consen 1 MGNLSSTLLS----DEDLEELQMYTGDPTQFSANEIERLYERFKKLDRNN-GDGYLTKEEFLSIPELALNPLADRIIDRF 75 (187)
T ss_pred CCcccccccc----hhhhHHHHhccCCCcccCHHHHHHHHHHHHHhcccc-ccCccCHHHHHHHHHHhcCcHHHHHHHHH
Confidence 7888887533 367888888888 99999999999999999873 4566554 99999
Q ss_pred cCCCCCc-ccHHHHHHHHHhhCCCCChHHHHHHHHhhhCCCCCCcccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Q 028605 75 DTKHNGI-LDFEEFARALSIFHPNSPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLTESGMNLSDDVIESIIDKTFE 153 (206)
Q Consensus 75 d~~~~g~-i~f~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~It~~Ef~~~l~~~~~~~~~~~~~~~~~~~~~~~f~ 153 (206)
+.+++|. |+|++|+..++.+.......++++.+|++||.+++|.|+++|+..++..++...... +++.++.++..+|.
T Consensus 76 ~~~~~~~~v~F~~Fv~~ls~f~~~~~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~~~~~~~~-~~e~~~~i~d~t~~ 154 (187)
T KOG0034|consen 76 DTDGNGDPVDFEEFVRLLSVFSPKASKREKLRFAFRVYDLDGDGFISREELKQILRMMVGENDDM-SDEQLEDIVDKTFE 154 (187)
T ss_pred hccCCCCccCHHHHHHHHhhhcCCccHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHccCCcc-hHHHHHHHHHHHHH
Confidence 9998888 999999999999999777778999999999999999999999999998875543333 69999999999999
Q ss_pred HhCCCCCCcccHHHHHHHHhhChhHHhhhhhh
Q 028605 154 EADTKHDGKIDKEEWRNLVLRHPSLLKNMTLQ 185 (206)
Q Consensus 154 ~~d~d~~g~Is~~eF~~~l~~~~~~~~~~~~~ 185 (206)
++|.|+||.|+++||+.++.+.|.+.+.|+.+
T Consensus 155 e~D~d~DG~IsfeEf~~~v~~~P~~~~~m~~~ 186 (187)
T KOG0034|consen 155 EADTDGDGKISFEEFCKVVEKQPDLLEKMTIR 186 (187)
T ss_pred HhCCCCCCcCcHHHHHHHHHcCccHHHHcCCC
Confidence 99999999999999999999999999999865
No 2
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.91 E-value=1.5e-23 Score=159.32 Aligned_cols=156 Identities=31% Similarity=0.503 Sum_probs=136.1
Q ss_pred CCCCcHHHHHhhcCCCHHHHHHHHHHHHhhccCCc------------------CccHHHHHHhHHcCCCCCcccHHHHHH
Q 028605 28 RGLEDPEALARETVFSVSEIEALYELFKKISSAVI------------------DDGLINKVFDLFDTKHNGILDFEEFAR 89 (206)
Q Consensus 28 ~~~~~~~~l~~~~~~s~~e~~~l~~~F~~~d~~~~------------------~~g~i~~lf~~~d~~~~g~i~f~ef~~ 89 (206)
+.++.++++.+.+++++.|+++|++.|..-+++.. .+.+...+|+.+|.|++|.|+|.||+.
T Consensus 9 ~~~~~~e~l~~~t~f~~~ei~~~Yr~Fk~~cP~G~~~~~~F~~i~~~~fp~gd~~~y~~~vF~~fD~~~dg~i~F~Efi~ 88 (193)
T KOG0044|consen 9 LQPESLEQLVQQTKFSKKEIQQWYRGFKNECPSGRLTLEEFREIYASFFPDGDASKYAELVFRTFDKNKDGTIDFLEFIC 88 (193)
T ss_pred CCcHHHHHHHHhcCCCHHHHHHHHHHhcccCCCCccCHHHHHHHHHHHCCCCCHHHHHHHHHHHhcccCCCCcCHHHHHH
Confidence 33488999999999999999999999998775410 234444599999999999999999999
Q ss_pred HHHhhCCCCChHHHHHHHHhhhCCCCCCcccHHHHHHHHHHHHHhcCC---CCCHHHHHHHHHHHHHHhCCCCCCcccHH
Q 028605 90 ALSIFHPNSPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLTESGM---NLSDDVIESIIDKTFEEADTKHDGKIDKE 166 (206)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~F~~~D~~~~g~It~~Ef~~~l~~~~~~~~~---~~~~~~~~~~~~~~f~~~d~d~~g~Is~~ 166 (206)
+++..++ +..++++.++|++||.||+|+|+++|+..++.+++...+. +..++.++..+..+|+.+|.|+||.||++
T Consensus 89 als~~~r-Gt~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D~n~Dg~lT~e 167 (193)
T KOG0044|consen 89 ALSLTSR-GTLEEKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKMDKNKDGKLTLE 167 (193)
T ss_pred HHHHHcC-CcHHHHhhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHcCCCCCCcccHH
Confidence 9999998 6999999999999999999999999999999998887664 23345677889999999999999999999
Q ss_pred HHHHHHhhChhHHhhhhh
Q 028605 167 EWRNLVLRHPSLLKNMTL 184 (206)
Q Consensus 167 eF~~~l~~~~~~~~~~~~ 184 (206)
||.......|.++..++.
T Consensus 168 ef~~~~~~d~~i~~~l~~ 185 (193)
T KOG0044|consen 168 EFIEGCKADPSILRALEQ 185 (193)
T ss_pred HHHHHhhhCHHHHHHhhh
Confidence 999999999999888754
No 3
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.88 E-value=9.4e-22 Score=144.86 Aligned_cols=130 Identities=30% Similarity=0.558 Sum_probs=118.9
Q ss_pred HHhhcCCCHHHHHHHHHHHHhhccCCcCccHHHH---------------------HHhHHcCCCCCcccHHHHHHHHHhh
Q 028605 36 LARETVFSVSEIEALYELFKKISSAVIDDGLINK---------------------VFDLFDTKHNGILDFEEFARALSIF 94 (206)
Q Consensus 36 l~~~~~~s~~e~~~l~~~F~~~d~~~~~~g~i~~---------------------lf~~~d~~~~g~i~f~ef~~~~~~~ 94 (206)
+...++++.+|+++|+++|..+|++ ++|.|.+ ++..+|. +.+.|+|.+|+.++...
T Consensus 8 ~~~~~~~t~~qi~~lkeaF~l~D~d--~~G~I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~ 84 (160)
T COG5126 8 LLTFTQLTEEQIQELKEAFQLFDRD--SDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVK 84 (160)
T ss_pred hhhcccCCHHHHHHHHHHHHHhCcC--CCCCCcHHHHHHHHHHcCCCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHH
Confidence 7778899999999999999999998 7887776 8888888 88999999999999999
Q ss_pred CCCCChHHHHHHHHhhhCCCCCCcccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhh
Q 028605 95 HPNSPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLTESGMNLSDDVIESIIDKTFEEADTKHDGKIDKEEWRNLVLR 174 (206)
Q Consensus 95 ~~~~~~~~~~~~~F~~~D~~~~g~It~~Ef~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~d~~g~Is~~eF~~~l~~ 174 (206)
.......++++++|+.||.|++|+|+..|++.+++. .|..+++++++.++ ..+|.|++|.|+|++|...+..
T Consensus 85 ~~~~~~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~----lge~~~deev~~ll----~~~d~d~dG~i~~~eF~~~~~~ 156 (160)
T COG5126 85 LKRGDKEEELREAFKLFDKDHDGYISIGELRRVLKS----LGERLSDEEVEKLL----KEYDEDGDGEIDYEEFKKLIKD 156 (160)
T ss_pred hccCCcHHHHHHHHHHhCCCCCceecHHHHHHHHHh----hcccCCHHHHHHHH----HhcCCCCCceEeHHHHHHHHhc
Confidence 877788999999999999999999999999999765 49999999988887 7999999999999999998876
Q ss_pred Ch
Q 028605 175 HP 176 (206)
Q Consensus 175 ~~ 176 (206)
.|
T Consensus 157 ~~ 158 (160)
T COG5126 157 SP 158 (160)
T ss_pred cC
Confidence 65
No 4
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=99.82 E-value=1.5e-19 Score=128.85 Aligned_cols=160 Identities=24% Similarity=0.481 Sum_probs=139.2
Q ss_pred hccccCCCCCCCCCCCcHHHHHhhcCCCHHHHHHHHHHHHhhccCCcC--------------------------ccHHHH
Q 028605 16 VNCCDADLYKQPRGLEDPEALARETVFSVSEIEALYELFKKISSAVID--------------------------DGLINK 69 (206)
Q Consensus 16 m~~~~s~~~~~~~~~~~~~~l~~~~~~s~~e~~~l~~~F~~~d~~~~~--------------------------~g~i~~ 69 (206)
||+....-.. ++++.....+-|+.+++.+++++|+.+.++.++ +..-.+
T Consensus 1 MGNK~~vFT~-----eqLd~YQDCTFFtrKdIlrl~~Rf~~L~P~lVP~~~~~~~~~~v~vp~e~i~kMPELkenpfk~r 75 (189)
T KOG0038|consen 1 MGNKQTVFTE-----EQLDEYQDCTFFTRKDILRLHKRFYELAPHLVPTDMTGNRPPIVKVPFELIEKMPELKENPFKRR 75 (189)
T ss_pred CCCccceeeH-----HHHhhhcccccccHHHHHHHHHHHHHhCcccccccccCCCCCceeecHHHHhhChhhhcChHHHH
Confidence 6666555444 778999999999999999999999999987332 112222
Q ss_pred HHhHHcCCCCCcccHHHHHHHHHhhCCCCChHHHHHHHHhhhCCCCCCcccHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 028605 70 VFDLFDTKHNGILDFEEFARALSIFHPNSPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLTESGMNLSDDVIESIID 149 (206)
Q Consensus 70 lf~~~d~~~~g~i~f~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~It~~Ef~~~l~~~~~~~~~~~~~~~~~~~~~ 149 (206)
+..+|..+|.|.++|++|+.+++.++...+.+-++..+|++||.|++++|-.+++...+.++ ....+++++++-+..
T Consensus 76 i~e~FSeDG~GnlsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~l---Tr~eLs~eEv~~i~e 152 (189)
T KOG0038|consen 76 ICEVFSEDGRGNLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSL---TRDELSDEEVELICE 152 (189)
T ss_pred HHHHhccCCCCcccHHHHHHHHHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHH---hhccCCHHHHHHHHH
Confidence 88999999999999999999999999888889999999999999999999999999998766 456899999999999
Q ss_pred HHHHHhCCCCCCcccHHHHHHHHhhChhHHhhhh
Q 028605 150 KTFEEADTKHDGKIDKEEWRNLVLRHPSLLKNMT 183 (206)
Q Consensus 150 ~~f~~~d~d~~g~Is~~eF~~~l~~~~~~~~~~~ 183 (206)
.+.++.|.|+||.+++.||..++.+.|+++..+-
T Consensus 153 kvieEAD~DgDgkl~~~eFe~~i~raPDFlsTFH 186 (189)
T KOG0038|consen 153 KVIEEADLDGDGKLSFAEFEHVILRAPDFLSTFH 186 (189)
T ss_pred HHHHHhcCCCCCcccHHHHHHHHHhCcchHhhhe
Confidence 9999999999999999999999999999877654
No 5
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.78 E-value=3.9e-18 Score=126.75 Aligned_cols=123 Identities=27% Similarity=0.493 Sum_probs=108.5
Q ss_pred CCHHHHHHHHHHHHhhccCCcCccHHHH---------------------HHhHHcCCCCCcccHHHHHHHHHhhCCCCC-
Q 028605 42 FSVSEIEALYELFKKISSAVIDDGLINK---------------------VFDLFDTKHNGILDFEEFARALSIFHPNSP- 99 (206)
Q Consensus 42 ~s~~e~~~l~~~F~~~d~~~~~~g~i~~---------------------lf~~~d~~~~g~i~f~ef~~~~~~~~~~~~- 99 (206)
++..++.+++.+|+.+|.+ ++|+|+. ++..+|.+++|.|+|.+|+.++........
T Consensus 2 ~~~~~~~el~~~F~~fD~d--~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~ 79 (151)
T KOG0027|consen 2 LSEEQILELKEAFQLFDKD--GDGKISVEELGAVLRSLGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTD 79 (151)
T ss_pred CCHHHHHHHHHHHHHHCCC--CCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhccccc
Confidence 5778899999999999999 8898875 999999999999999999999987665323
Q ss_pred ---hHHHHHHHHhhhCCCCCCcccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhh
Q 028605 100 ---IDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLTESGMNLSDDVIESIIDKTFEEADTKHDGKIDKEEWRNLVLR 174 (206)
Q Consensus 100 ---~~~~~~~~F~~~D~~~~g~It~~Ef~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~d~~g~Is~~eF~~~l~~ 174 (206)
..+.++.+|+.||++++|+||.+||+.++..+ |...+.++++.++ +.+|.|++|.|+|++|+.++..
T Consensus 80 ~~~~~~el~eaF~~fD~d~~G~Is~~el~~~l~~l----g~~~~~~e~~~mi----~~~d~d~dg~i~f~ef~~~m~~ 149 (151)
T KOG0027|consen 80 EEASSEELKEAFRVFDKDGDGFISASELKKVLTSL----GEKLTDEECKEMI----REVDVDGDGKVNFEEFVKMMSG 149 (151)
T ss_pred ccccHHHHHHHHHHHccCCCCcCcHHHHHHHHHHh----CCcCCHHHHHHHH----HhcCCCCCCeEeHHHHHHHHhc
Confidence 34589999999999999999999999997655 8899988887777 7999999999999999998864
No 6
>PTZ00183 centrin; Provisional
Probab=99.75 E-value=6.5e-17 Score=120.40 Aligned_cols=128 Identities=23% Similarity=0.400 Sum_probs=109.3
Q ss_pred cCCCHHHHHHHHHHHHhhccCCcCccHHHH---------------------HHhHHcCCCCCcccHHHHHHHHHhhCCCC
Q 028605 40 TVFSVSEIEALYELFKKISSAVIDDGLINK---------------------VFDLFDTKHNGILDFEEFARALSIFHPNS 98 (206)
Q Consensus 40 ~~~s~~e~~~l~~~F~~~d~~~~~~g~i~~---------------------lf~~~d~~~~g~i~f~ef~~~~~~~~~~~ 98 (206)
..+++.++.++...|..+|.+ ++|.|+. +|..+|.+++|.|+|.+|+.++.......
T Consensus 9 ~~~~~~~~~~~~~~F~~~D~~--~~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~~~~ 86 (158)
T PTZ00183 9 PGLTEDQKKEIREAFDLFDTD--GSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKLGER 86 (158)
T ss_pred CCCCHHHHHHHHHHHHHhCCC--CCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHhcCC
Confidence 348889999999999999988 7887665 88899999999999999999987655444
Q ss_pred ChHHHHHHHHhhhCCCCCCcccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhhChh
Q 028605 99 PIDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLTESGMNLSDDVIESIIDKTFEEADTKHDGKIDKEEWRNLVLRHPS 177 (206)
Q Consensus 99 ~~~~~~~~~F~~~D~~~~g~It~~Ef~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~d~~g~Is~~eF~~~l~~~~~ 177 (206)
...+.++.+|+.+|.+++|.|+.+||..++..+ +..++..++..++ ..+|.+++|.|++++|..++...|.
T Consensus 87 ~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~----~~~l~~~~~~~~~----~~~d~~~~g~i~~~ef~~~~~~~~~ 157 (158)
T PTZ00183 87 DPREEILKAFRLFDDDKTGKISLKNLKRVAKEL----GETITDEELQEMI----DEADRNGDGEISEEEFYRIMKKTNL 157 (158)
T ss_pred CcHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHh----CCCCCHHHHHHHH----HHhCCCCCCcCcHHHHHHHHhcccC
Confidence 667789999999999999999999999997543 7778887766555 7899999999999999999988774
No 7
>PTZ00184 calmodulin; Provisional
Probab=99.71 E-value=5.2e-16 Score=114.13 Aligned_cols=124 Identities=26% Similarity=0.519 Sum_probs=104.6
Q ss_pred CCCHHHHHHHHHHHHhhccCCcCccHHHH---------------------HHhHHcCCCCCcccHHHHHHHHHhhCCCCC
Q 028605 41 VFSVSEIEALYELFKKISSAVIDDGLINK---------------------VFDLFDTKHNGILDFEEFARALSIFHPNSP 99 (206)
Q Consensus 41 ~~s~~e~~~l~~~F~~~d~~~~~~g~i~~---------------------lf~~~d~~~~g~i~f~ef~~~~~~~~~~~~ 99 (206)
.++++++..++..|..+|.+ ++|.|+. +|..+|.+++|.|+|++|+.++........
T Consensus 4 ~~~~~~~~~~~~~F~~~D~~--~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~ 81 (149)
T PTZ00184 4 QLTEEQIAEFKEAFSLFDKD--GDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKDTD 81 (149)
T ss_pred ccCHHHHHHHHHHHHHHcCC--CCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCc
Confidence 47788889999999999888 7776554 888999999999999999999887655446
Q ss_pred hHHHHHHHHhhhCCCCCCcccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhh
Q 028605 100 IDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLTESGMNLSDDVIESIIDKTFEEADTKHDGKIDKEEWRNLVLR 174 (206)
Q Consensus 100 ~~~~~~~~F~~~D~~~~g~It~~Ef~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~d~~g~Is~~eF~~~l~~ 174 (206)
..+.+..+|+.+|.+++|.|+.+||..++..+ +..++.+++..++ ..+|.+++|.|+|+||+.++..
T Consensus 82 ~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~----~~~~~~~~~~~~~----~~~d~~~~g~i~~~ef~~~~~~ 148 (149)
T PTZ00184 82 SEEEIKEAFKVFDRDGNGFISAAELRHVMTNL----GEKLTDEEVDEMI----READVDGDGQINYEEFVKMMMS 148 (149)
T ss_pred HHHHHHHHHHhhCCCCCCeEeHHHHHHHHHHH----CCCCCHHHHHHHH----HhcCCCCCCcCcHHHHHHHHhc
Confidence 67789999999999999999999999987554 7778877766554 7899999999999999988753
No 8
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.67 E-value=1.7e-15 Score=109.87 Aligned_cols=126 Identities=25% Similarity=0.475 Sum_probs=112.0
Q ss_pred hcCCCHHHHHHHHHHHHhhccCCcCccHHHH---------------------HHhHHcCCCCCcccHHHHHHHHHhhCCC
Q 028605 39 ETVFSVSEIEALYELFKKISSAVIDDGLINK---------------------VFDLFDTKHNGILDFEEFARALSIFHPN 97 (206)
Q Consensus 39 ~~~~s~~e~~~l~~~F~~~d~~~~~~g~i~~---------------------lf~~~d~~~~g~i~f~ef~~~~~~~~~~ 97 (206)
..++++++-+.++..|..++++ +.|+|.- +...+|+++.|.|+|++|+..++.....
T Consensus 24 ~~~l~~~q~q~i~e~f~lfd~~--~~g~iD~~EL~vAmralGFE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~~e 101 (172)
T KOG0028|consen 24 KSELTEEQKQEIKEAFELFDPD--MAGKIDVEELKVAMRALGFEPKKEEILKLLADVDKEGSGKITFEDFRRVMTVKLGE 101 (172)
T ss_pred CccccHHHHhhHHHHHHhhccC--CCCcccHHHHHHHHHHcCCCcchHHHHHHHHhhhhccCceechHHHHHHHHHHHhc
Confidence 4567888999999999999998 7777664 7778889999999999999998776665
Q ss_pred CChHHHHHHHHhhhCCCCCCcccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhh
Q 028605 98 SPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLTESGMNLSDDVIESIIDKTFEEADTKHDGKIDKEEWRNLVLR 174 (206)
Q Consensus 98 ~~~~~~~~~~F~~~D~~~~g~It~~Ef~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~d~~g~Is~~eF~~~l~~ 174 (206)
..+.++++.+|+++|-+++|.|+..+|+.+. .++|+.++++++.+++ ..+|.+++|.|+-+||..+++.
T Consensus 102 ~dt~eEi~~afrl~D~D~~Gkis~~~lkrva----keLgenltD~El~eMI----eEAd~d~dgevneeEF~~imk~ 170 (172)
T KOG0028|consen 102 RDTKEEIKKAFRLFDDDKTGKISQRNLKRVA----KELGENLTDEELMEMI----EEADRDGDGEVNEEEFIRIMKK 170 (172)
T ss_pred cCcHHHHHHHHHcccccCCCCcCHHHHHHHH----HHhCccccHHHHHHHH----HHhcccccccccHHHHHHHHhc
Confidence 6789999999999999999999999999984 5569999999999999 7999999999999999998865
No 9
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.53 E-value=3.4e-13 Score=97.33 Aligned_cols=124 Identities=19% Similarity=0.391 Sum_probs=107.4
Q ss_pred cCCCHHHHHHHHHHHHhhccCCcCccHHHH-----------------HHhHHcCCCCCcccHHHHHHHHHhhCCCCChHH
Q 028605 40 TVFSVSEIEALYELFKKISSAVIDDGLINK-----------------VFDLFDTKHNGILDFEEFARALSIFHPNSPIDD 102 (206)
Q Consensus 40 ~~~s~~e~~~l~~~F~~~d~~~~~~g~i~~-----------------lf~~~d~~~~g~i~f~ef~~~~~~~~~~~~~~~ 102 (206)
+.|++.++++++++|..+|.| .+|.|.+ -+..+=....|.|+|.-|+.++...+....+++
T Consensus 24 amf~q~QIqEfKEAF~~mDqn--rDG~IdkeDL~d~~aSlGk~~~d~elDaM~~Ea~gPINft~FLTmfGekL~gtdpe~ 101 (171)
T KOG0031|consen 24 AMFDQSQIQEFKEAFNLMDQN--RDGFIDKEDLRDMLASLGKIASDEELDAMMKEAPGPINFTVFLTMFGEKLNGTDPEE 101 (171)
T ss_pred HHhhHHHHHHHHHHHHHHhcc--CCCcccHHHHHHHHHHcCCCCCHHHHHHHHHhCCCCeeHHHHHHHHHHHhcCCCHHH
Confidence 347899999999999999999 9998887 333333456789999999999987776668889
Q ss_pred HHHHHHhhhCCCCCCcccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHh
Q 028605 103 KIEFSFQLYDLKQQGFIERQEVKQMVVATLTESGMNLSDDVIESIIDKTFEEADTKHDGKIDKEEWRNLVL 173 (206)
Q Consensus 103 ~~~~~F~~~D~~~~g~It~~Ef~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~d~~g~Is~~eF~~~l~ 173 (206)
-+..+|+.||.++.|.|..+.|+.+|.. .|..+++++|+.++ +.+-.|..|.|.|..|..++.
T Consensus 102 ~I~~AF~~FD~~~~G~I~~d~lre~Ltt----~gDr~~~eEV~~m~----r~~p~d~~G~~dy~~~~~~it 164 (171)
T KOG0031|consen 102 VILNAFKTFDDEGSGKIDEDYLRELLTT----MGDRFTDEEVDEMY----REAPIDKKGNFDYKAFTYIIT 164 (171)
T ss_pred HHHHHHHhcCccCCCccCHHHHHHHHHH----hcccCCHHHHHHHH----HhCCcccCCceeHHHHHHHHH
Confidence 9999999999999999999999999654 48999999987776 788888999999999999986
No 10
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=99.48 E-value=3.8e-13 Score=102.57 Aligned_cols=137 Identities=20% Similarity=0.373 Sum_probs=106.3
Q ss_pred HHHHHHHHHhhccCCcCccHHHH----------------------HHhHHcCCCCCcccHHHHHHHHHhhCCCCChHHHH
Q 028605 47 IEALYELFKKISSAVIDDGLINK----------------------VFDLFDTKHNGILDFEEFARALSIFHPNSPIDDKI 104 (206)
Q Consensus 47 ~~~l~~~F~~~d~~~~~~g~i~~----------------------lf~~~d~~~~g~i~f~ef~~~~~~~~~~~~~~~~~ 104 (206)
...+...|...|.+ .+|.|.. |+..||.+.+|.|+|+||..++..+ ..|
T Consensus 56 ~~~~~~~f~~vD~d--~sg~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~i-------~~W 126 (221)
T KOG0037|consen 56 FPQLAGWFQSVDRD--RSGRILAKELQQALSNGTWSPFSIETCRLMISMFDRDNSGTIGFKEFKALWKYI-------NQW 126 (221)
T ss_pred cHHHHHHHHhhCcc--ccccccHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHH-------HHH
Confidence 44666677777777 6555554 9999999999999999999999544 349
Q ss_pred HHHHhhhCCCCCCcccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhhChhHHhhh--
Q 028605 105 EFSFQLYDLKQQGFIERQEVKQMVVATLTESGMNLSDDVIESIIDKTFEEADTKHDGKIDKEEWRNLVLRHPSLLKNM-- 182 (206)
Q Consensus 105 ~~~F~~~D~~~~g~It~~Ef~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~d~~g~Is~~eF~~~l~~~~~~~~~~-- 182 (206)
+.+|+.||.|++|.|+..||++++.. .|..++++..+-++ +.+|..+.|.|.+++|++++...+-+.+.+
T Consensus 127 r~vF~~~D~D~SG~I~~sEL~~Al~~----~Gy~Lspq~~~~lv----~kyd~~~~g~i~FD~FI~ccv~L~~lt~~Fr~ 198 (221)
T KOG0037|consen 127 RNVFRTYDRDRSGTIDSSELRQALTQ----LGYRLSPQFYNLLV----RKYDRFGGGRIDFDDFIQCCVVLQRLTEAFRR 198 (221)
T ss_pred HHHHHhcccCCCCcccHHHHHHHHHH----cCcCCCHHHHHHHH----HHhccccCCceeHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999655 49999997766666 789877799999999999888766554443
Q ss_pred -hhhhhhhhhhccCcceec
Q 028605 183 -TLQYLKDITTTFPSFVFH 200 (206)
Q Consensus 183 -~~~~~~~~~~~~~~~~~~ 200 (206)
-.....-|+..|..||++
T Consensus 199 ~D~~q~G~i~~~y~dfl~~ 217 (221)
T KOG0037|consen 199 RDTAQQGSITISYDDFLQM 217 (221)
T ss_pred hccccceeEEEeHHHHHHH
Confidence 222334455555666554
No 11
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=99.41 E-value=3e-12 Score=105.76 Aligned_cols=134 Identities=28% Similarity=0.452 Sum_probs=110.2
Q ss_pred CCHHHHHHHHHHHHhhccCCcCccHHHH----------------------HHhHHcCCCCCcccHHHHHHHHHhhCCCCC
Q 028605 42 FSVSEIEALYELFKKISSAVIDDGLINK----------------------VFDLFDTKHNGILDFEEFARALSIFHPNSP 99 (206)
Q Consensus 42 ~s~~e~~~l~~~F~~~d~~~~~~g~i~~----------------------lf~~~d~~~~g~i~f~ef~~~~~~~~~~~~ 99 (206)
.+++--.+++..|+.+|.+ ++|.++- +|..+|.|.+|.++|+||...+. .
T Consensus 8 ~~~er~~r~~~lf~~lD~~--~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~------~ 79 (463)
T KOG0036|consen 8 TDEERDIRIRCLFKELDSK--NDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLD------N 79 (463)
T ss_pred CcHHHHHHHHHHHHHhccC--CCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHH------H
Confidence 4455556666777777776 5555443 99999999999999999999994 5
Q ss_pred hHHHHHHHHhhhCCCCCCcccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhhChhHH
Q 028605 100 IDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLTESGMNLSDDVIESIIDKTFEEADTKHDGKIDKEEWRNLVLRHPSLL 179 (206)
Q Consensus 100 ~~~~~~~~F~~~D~~~~g~It~~Ef~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~d~~g~Is~~eF~~~l~~~~~~~ 179 (206)
.+.++..+|+..|.++||.|..+|+...++.+ |.++++++++.++ +.+|+++++.|+++||...+..+|
T Consensus 80 ~E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~----gi~l~de~~~k~~----e~~d~~g~~~I~~~e~rd~~ll~p--- 148 (463)
T KOG0036|consen 80 KELELYRIFQSIDLEHDGKIDPNEIWRYLKDL----GIQLSDEKAAKFF----EHMDKDGKATIDLEEWRDHLLLYP--- 148 (463)
T ss_pred hHHHHHHHHhhhccccCCccCHHHHHHHHHHh----CCccCHHHHHHHH----HHhccCCCeeeccHHHHhhhhcCC---
Confidence 66778999999999999999999999996555 9999998877755 789999999999999999999888
Q ss_pred hhhhhhhhhhhhhccCcce
Q 028605 180 KNMTLQYLKDITTTFPSFV 198 (206)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~ 198 (206)
...++||+.-|+..+
T Consensus 149 ----~s~i~di~~~W~h~~ 163 (463)
T KOG0036|consen 149 ----ESDLEDIYDFWRHVL 163 (463)
T ss_pred ----hhHHHHHHHhhhhhe
Confidence 355677777777655
No 12
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=99.39 E-value=4e-12 Score=90.34 Aligned_cols=122 Identities=20% Similarity=0.370 Sum_probs=97.3
Q ss_pred CCCHHHHHHHHHHHHhhccCCcCccHHHH---------------------HHhHHcCC--CCCcccHHHHHHHHHhhCCC
Q 028605 41 VFSVSEIEALYELFKKISSAVIDDGLINK---------------------VFDLFDTK--HNGILDFEEFARALSIFHPN 97 (206)
Q Consensus 41 ~~s~~e~~~l~~~F~~~d~~~~~~g~i~~---------------------lf~~~d~~--~~g~i~f~ef~~~~~~~~~~ 97 (206)
.+++++..+++++|..+|.. ++|.|+. ....++++ +-.+++|++|+.++..+.++
T Consensus 4 ~~~~d~~~e~ke~F~lfD~~--gD~ki~~~q~gdvlRalG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vakn 81 (152)
T KOG0030|consen 4 AFTPDQMEEFKEAFLLFDRT--GDGKISGSQVGDVLRALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKN 81 (152)
T ss_pred ccCcchHHHHHHHHHHHhcc--CcccccHHHHHHHHHHhcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhc
Confidence 35677788999999999988 7777664 33333333 23689999999999887753
Q ss_pred --CChHHHHHHHHhhhCCCCCCcccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHh
Q 028605 98 --SPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLTESGMNLSDDVIESIIDKTFEEADTKHDGKIDKEEWRNLVL 173 (206)
Q Consensus 98 --~~~~~~~~~~F~~~D~~~~g~It~~Ef~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~d~~g~Is~~eF~~~l~ 173 (206)
..+.+.+....+.||++++|.|...|++++|..+ |..+++++++.++. --.|.+|.|.|+.|++.+.
T Consensus 82 k~q~t~edfvegLrvFDkeg~G~i~~aeLRhvLttl----Gekl~eeEVe~Lla-----g~eD~nG~i~YE~fVk~i~ 150 (152)
T KOG0030|consen 82 KDQGTYEDFVEGLRVFDKEGNGTIMGAELRHVLTTL----GEKLTEEEVEELLA-----GQEDSNGCINYEAFVKHIM 150 (152)
T ss_pred cccCcHHHHHHHHHhhcccCCcceeHHHHHHHHHHH----HhhccHHHHHHHHc-----cccccCCcCcHHHHHHHHh
Confidence 3567788889999999999999999999997766 99999999998872 3346789999999998764
No 13
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=99.39 E-value=1.9e-12 Score=82.47 Aligned_cols=66 Identities=29% Similarity=0.615 Sum_probs=59.3
Q ss_pred HHHHHHhhhCCCCCCcccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHH
Q 028605 103 KIEFSFQLYDLKQQGFIERQEVKQMVVATLTESGMNLSDDVIESIIDKTFEEADTKHDGKIDKEEWRNLV 172 (206)
Q Consensus 103 ~~~~~F~~~D~~~~g~It~~Ef~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~d~~g~Is~~eF~~~l 172 (206)
+++.+|+.+|++++|+|+.+||..++..+ +...++..+...+..+|+.+|.|++|.|+++||..++
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~----~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHL----GRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHT----TSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHh----cccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 47889999999999999999999996554 6666788899999999999999999999999999875
No 14
>KOG0027 consensus Calmodulin and related proteins (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.33 E-value=2.5e-11 Score=90.07 Aligned_cols=123 Identities=20% Similarity=0.282 Sum_probs=95.1
Q ss_pred cHHHHHHhHHcCCCCCcccHHHHHHHHHhhCCCCChHHHHHHHHhhhCCCCCCcccHHHHHHHHHHHHHhcCCCCCHHHH
Q 028605 65 GLINKVFDLFDTKHNGILDFEEFARALSIFHPNSPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLTESGMNLSDDVI 144 (206)
Q Consensus 65 g~i~~lf~~~d~~~~g~i~f~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~It~~Ef~~~l~~~~~~~~~~~~~~~~ 144 (206)
..+..+|..+|.+++|.|+-.++..++..+... ++..++..++..+|.+++|.|+++||..++........... .-
T Consensus 8 ~el~~~F~~fD~d~~G~i~~~el~~~lr~lg~~-~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~---~~ 83 (151)
T KOG0027|consen 8 LELKEAFQLFDKDGDGKISVEELGAVLRSLGQN-PTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEE---AS 83 (151)
T ss_pred HHHHHHHHHHCCCCCCcccHHHHHHHHHHcCCC-CCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhccccccc---cc
Confidence 456679999999999999999999999888874 89999999999999999999999999999765422211111 12
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHhhChhHHhhhhhhhhhhhhhcc
Q 028605 145 ESIIDKTFEEADTKHDGKIDKEEWRNLVLRHPSLLKNMTLQYLKDITTTF 194 (206)
Q Consensus 145 ~~~~~~~f~~~d~d~~g~Is~~eF~~~l~~~~~~~~~~~~~~~~~~~~~~ 194 (206)
.+.++.+|+.+|.|++|+||..|+..++...-+ -++.+....|..++
T Consensus 84 ~~el~eaF~~fD~d~~G~Is~~el~~~l~~lg~---~~~~~e~~~mi~~~ 130 (151)
T KOG0027|consen 84 SEELKEAFRVFDKDGDGFISASELKKVLTSLGE---KLTDEECKEMIREV 130 (151)
T ss_pred HHHHHHHHHHHccCCCCcCcHHHHHHHHHHhCC---cCCHHHHHHHHHhc
Confidence 234667889999999999999999999987432 13344444444443
No 15
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.24 E-value=4.1e-11 Score=88.57 Aligned_cols=113 Identities=20% Similarity=0.351 Sum_probs=91.6
Q ss_pred HHHHHhhccCCcCccHHHHHHhHHcCCCCCcccHHHHHHHHHhhCCCCChHHHHHHHHhhhCCCCCCcccHHHHHHHHHH
Q 028605 51 YELFKKISSAVIDDGLINKVFDLFDTKHNGILDFEEFARALSIFHPNSPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVA 130 (206)
Q Consensus 51 ~~~F~~~d~~~~~~g~i~~lf~~~d~~~~g~i~f~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~It~~Ef~~~l~~ 130 (206)
...|..++.. .-..+...|..+|++++|.|++.++..+++.+.. .++...+..+|..+|. |+|.|++.+|..++..
T Consensus 8 ~~~~~~~t~~--qi~~lkeaF~l~D~d~~G~I~~~el~~ilr~lg~-~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~ 83 (160)
T COG5126 8 LLTFTQLTEE--QIQELKEAFQLFDRDSDGLIDRNELGKILRSLGF-NPSEAEINKLFEEIDA-GNETVDFPEFLTVMSV 83 (160)
T ss_pred hhhcccCCHH--HHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHcCC-CCcHHHHHHHHHhccC-CCCccCHHHHHHHHHH
Confidence 4455566655 4456666999999999999999999999985444 6899999999999999 9999999999999866
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhh
Q 028605 131 TLTESGMNLSDDVIESIIDKTFEEADTKHDGKIDKEEWRNLVLR 174 (206)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~f~~~d~d~~g~Is~~eF~~~l~~ 174 (206)
.... .-+.+ -+..+|+.+|.|++|+|+..+++.++..
T Consensus 84 ~~~~---~~~~E----el~~aF~~fD~d~dG~Is~~eL~~vl~~ 120 (160)
T COG5126 84 KLKR---GDKEE----ELREAFKLFDKDHDGYISIGELRRVLKS 120 (160)
T ss_pred Hhcc---CCcHH----HHHHHHHHhCCCCCceecHHHHHHHHHh
Confidence 5332 22233 3567779999999999999999999985
No 16
>PTZ00184 calmodulin; Provisional
Probab=99.18 E-value=4.1e-10 Score=82.54 Aligned_cols=101 Identities=20% Similarity=0.325 Sum_probs=82.4
Q ss_pred HHHHHHhHHcCCCCCcccHHHHHHHHHhhCCCCChHHHHHHHHhhhCCCCCCcccHHHHHHHHHHHHHhcCCCCCHHHHH
Q 028605 66 LINKVFDLFDTKHNGILDFEEFARALSIFHPNSPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLTESGMNLSDDVIE 145 (206)
Q Consensus 66 ~i~~lf~~~d~~~~g~i~f~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~It~~Ef~~~l~~~~~~~~~~~~~~~~~ 145 (206)
.+...|..+|.+++|.|+++||..++...... ...+.+..+|+.+|.+++|.|+++||..++..... ... ..
T Consensus 12 ~~~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~-~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~---~~~----~~ 83 (149)
T PTZ00184 12 EFKEAFSLFDKDGDGTITTKELGTVMRSLGQN-PTEAELQDMINEVDADGNGTIDFPEFLTLMARKMK---DTD----SE 83 (149)
T ss_pred HHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCC-CCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhcc---CCc----HH
Confidence 45568999999999999999999998776543 55778999999999999999999999998754311 111 22
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHhh
Q 028605 146 SIIDKTFEEADTKHDGKIDKEEWRNLVLR 174 (206)
Q Consensus 146 ~~~~~~f~~~d~d~~g~Is~~eF~~~l~~ 174 (206)
..+..+|..+|.+++|.|+.++|..++..
T Consensus 84 ~~~~~~F~~~D~~~~g~i~~~e~~~~l~~ 112 (149)
T PTZ00184 84 EEIKEAFKVFDRDGNGFISAAELRHVMTN 112 (149)
T ss_pred HHHHHHHHhhCCCCCCeEeHHHHHHHHHH
Confidence 34677889999999999999999998865
No 17
>PTZ00183 centrin; Provisional
Probab=99.16 E-value=1e-09 Score=81.38 Aligned_cols=101 Identities=26% Similarity=0.341 Sum_probs=82.2
Q ss_pred HHHHHHhHHcCCCCCcccHHHHHHHHHhhCCCCChHHHHHHHHhhhCCCCCCcccHHHHHHHHHHHHHhcCCCCCHHHHH
Q 028605 66 LINKVFDLFDTKHNGILDFEEFARALSIFHPNSPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLTESGMNLSDDVIE 145 (206)
Q Consensus 66 ~i~~lf~~~d~~~~g~i~f~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~It~~Ef~~~l~~~~~~~~~~~~~~~~~ 145 (206)
.+...|..+|.+++|.|++.||..++..+... .....+..+|+.+|.+++|.|+++||..++.... ......
T Consensus 18 ~~~~~F~~~D~~~~G~i~~~e~~~~l~~~g~~-~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~~~---~~~~~~---- 89 (158)
T PTZ00183 18 EIREAFDLFDTDGSGTIDPKELKVAMRSLGFE-PKKEEIKQMIADVDKDGSGKIDFEEFLDIMTKKL---GERDPR---- 89 (158)
T ss_pred HHHHHHHHhCCCCCCcccHHHHHHHHHHhCCC-CCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHHh---cCCCcH----
Confidence 45558999999999999999999999876542 5667799999999999999999999999865431 122232
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHhh
Q 028605 146 SIIDKTFEEADTKHDGKIDKEEWRNLVLR 174 (206)
Q Consensus 146 ~~~~~~f~~~d~d~~g~Is~~eF~~~l~~ 174 (206)
..+..+|+.+|.+++|.|+.+||..++..
T Consensus 90 ~~l~~~F~~~D~~~~G~i~~~e~~~~l~~ 118 (158)
T PTZ00183 90 EEILKAFRLFDDDKTGKISLKNLKRVAKE 118 (158)
T ss_pred HHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 33567789999999999999999999875
No 18
>PLN02964 phosphatidylserine decarboxylase
Probab=99.15 E-value=5e-10 Score=99.47 Aligned_cols=102 Identities=19% Similarity=0.274 Sum_probs=88.2
Q ss_pred CCCCCCcHHHHHhh--cCCCHHHHHHHHHHHHhhccCCcCccH---------------------HHHHHhHHcCCCCCcc
Q 028605 26 QPRGLEDPEALARE--TVFSVSEIEALYELFKKISSAVIDDGL---------------------INKVFDLFDTKHNGIL 82 (206)
Q Consensus 26 ~~~~~~~~~~l~~~--~~~s~~e~~~l~~~F~~~d~~~~~~g~---------------------i~~lf~~~d~~~~g~i 82 (206)
.+..++.+..+... ++|+.+|+.++++.|+.+|++ ++|. +..+|..+|.+++|.|
T Consensus 119 ~~~s~n~lv~~~e~~~t~f~~kqi~elkeaF~lfD~d--gdG~iLg~ilrslG~~~pte~e~~fi~~mf~~~D~DgdG~I 196 (644)
T PLN02964 119 NRLSKNTLVGYCELDLFDFVTQEPESACESFDLLDPS--SSNKVVGSIFVSCSIEDPVETERSFARRILAIVDYDEDGQL 196 (644)
T ss_pred CCCCHHHhhhheeecHhhccHHHHHHHHHHHHHHCCC--CCCcCHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCCCeE
Confidence 34445778888888 899999999999999999998 6542 4558999999999999
Q ss_pred cHHHHHHHHHhhCCCCChHHHHHHHHhhhCCCCCCcccHHHHHHHHHH
Q 028605 83 DFEEFARALSIFHPNSPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVA 130 (206)
Q Consensus 83 ~f~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~It~~Ef~~~l~~ 130 (206)
+|.||+.++..+.. ...+++++.+|+.+|.|++|.|+.+||..++..
T Consensus 197 dfdEFl~lL~~lg~-~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~ 243 (644)
T PLN02964 197 SFSEFSDLIKAFGN-LVAANKKEELFKAADLNGDGVVTIDELAALLAL 243 (644)
T ss_pred cHHHHHHHHHHhcc-CCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHh
Confidence 99999999987654 467888999999999999999999999999765
No 19
>KOG0044 consensus Ca2+ sensor (EF-Hand superfamily) [Signal transduction mechanisms]
Probab=99.12 E-value=8.4e-10 Score=84.30 Aligned_cols=107 Identities=24% Similarity=0.324 Sum_probs=89.5
Q ss_pred HHHHHHhHHcCC-CCCcccHHHHHHHHHhhCCCCChHHHHHHHHhhhCCCCCCcccHHHHHHHHHHHHHhcCCCCCHHHH
Q 028605 66 LINKVFDLFDTK-HNGILDFEEFARALSIFHPNSPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLTESGMNLSDDVI 144 (206)
Q Consensus 66 ~i~~lf~~~d~~-~~g~i~f~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~It~~Ef~~~l~~~~~~~~~~~~~~~~ 144 (206)
.|..++..|-.+ .+|.++-++|..++..+.+.+........+|+.||++++|.|++.||..++..+.+. .+
T Consensus 27 ei~~~Yr~Fk~~cP~G~~~~~~F~~i~~~~fp~gd~~~y~~~vF~~fD~~~dg~i~F~Efi~als~~~rG--------t~ 98 (193)
T KOG0044|consen 27 EIQQWYRGFKNECPSGRLTLEEFREIYASFFPDGDASKYAELVFRTFDKNKDGTIDFLEFICALSLTSRG--------TL 98 (193)
T ss_pred HHHHHHHHhcccCCCCccCHHHHHHHHHHHCCCCCHHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHcCC--------cH
Confidence 666677776655 589999999999999999877888899999999999999999999999998766443 24
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHhhChhHHh
Q 028605 145 ESIIDKTFEEADTKHDGKIDKEEWRNLVLRHPSLLK 180 (206)
Q Consensus 145 ~~~~~~~f~~~d~d~~g~Is~~eF~~~l~~~~~~~~ 180 (206)
++.++.+|+.+|.|++|+|+++|+..++.....+..
T Consensus 99 eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~ 134 (193)
T KOG0044|consen 99 EEKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTG 134 (193)
T ss_pred HHHhhhhheeecCCCCceEcHHHHHHHHHHHHHHcc
Confidence 556778899999999999999999999887544433
No 20
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=99.10 E-value=4.3e-10 Score=75.75 Aligned_cols=67 Identities=16% Similarity=0.268 Sum_probs=55.1
Q ss_pred HHHHHHHhhhCC-CCCCcccHHHHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhhC
Q 028605 102 DKIEFSFQLYDL-KQQGFIERQEVKQMVVATLTESGMNLSD-DVIESIIDKTFEEADTKHDGKIDKEEWRNLVLRH 175 (206)
Q Consensus 102 ~~~~~~F~~~D~-~~~g~It~~Ef~~~l~~~~~~~~~~~~~-~~~~~~~~~~f~~~d~d~~g~Is~~eF~~~l~~~ 175 (206)
..+..+|+.||+ +++|+|+..||+.++.. +.|..+++ ++++.++ +..|.|+||.|+|+||..++...
T Consensus 8 ~~l~~~F~~fd~~~~~g~i~~~ELk~ll~~---elg~~ls~~~~v~~mi----~~~D~d~DG~I~F~EF~~l~~~l 76 (89)
T cd05022 8 ETLVSNFHKASVKGGKESLTASEFQELLTQ---QLPHLLKDVEGLEEKM----KNLDVNQDSKLSFEEFWELIGEL 76 (89)
T ss_pred HHHHHHHHHHhCCCCCCeECHHHHHHHHHH---HhhhhccCHHHHHHHH----HHhCCCCCCCCcHHHHHHHHHHH
Confidence 447889999999 99999999999999865 13555666 5555554 89999999999999999988764
No 21
>KOG0028 consensus Ca2+-binding protein (centrin/caltractin), EF-Hand superfamily protein [Cytoskeleton; Cell cycle control, cell division, chromosome partitioning]
Probab=99.01 E-value=6.8e-09 Score=75.74 Aligned_cols=122 Identities=22% Similarity=0.310 Sum_probs=94.9
Q ss_pred cHHHHHHhHHcCCCCCcccHHHHHHHHHhhCCCCChHHHHHHHHhhhCCCCCCcccHHHHHHHHHHHHHhcCCCCCHHHH
Q 028605 65 GLINKVFDLFDTKHNGILDFEEFARALSIFHPNSPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLTESGMNLSDDVI 144 (206)
Q Consensus 65 g~i~~lf~~~d~~~~g~i~f~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~It~~Ef~~~l~~~~~~~~~~~~~~~~ 144 (206)
..|...|..||++++|.|++.|+...+..+.. .+..+++..+..-+|++|.|.|++++|+.++...+ +..-+.+++
T Consensus 33 q~i~e~f~lfd~~~~g~iD~~EL~vAmralGF-E~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~k~---~e~dt~eEi 108 (172)
T KOG0028|consen 33 QEIKEAFELFDPDMAGKIDVEELKVAMRALGF-EPKKEEILKLLADVDKEGSGKITFEDFRRVMTVKL---GERDTKEEI 108 (172)
T ss_pred hhHHHHHHhhccCCCCcccHHHHHHHHHHcCC-CcchHHHHHHHHhhhhccCceechHHHHHHHHHHH---hccCcHHHH
Confidence 34555999999999999999999888866665 47778888899999999999999999999975443 333466664
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHhhChhHHhhhhhhhhhhhhhccCcc
Q 028605 145 ESIIDKTFEEADTKHDGKIDKEEWRNLVLRHPSLLKNMTLQYLKDITTTFPSF 197 (206)
Q Consensus 145 ~~~~~~~f~~~d~d~~g~Is~~eF~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (206)
..+|+.+|.|++|.||+.+|+.+..... ..++-.-+-+|+.++-+|
T Consensus 109 ----~~afrl~D~D~~Gkis~~~lkrvakeLg---enltD~El~eMIeEAd~d 154 (172)
T KOG0028|consen 109 ----KKAFRLFDDDKTGKISQRNLKRVAKELG---ENLTDEELMEMIEEADRD 154 (172)
T ss_pred ----HHHHHcccccCCCCcCHHHHHHHHHHhC---ccccHHHHHHHHHHhccc
Confidence 4555899999999999999999988743 334445555666665554
No 22
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=99.00 E-value=3.1e-09 Score=71.58 Aligned_cols=69 Identities=19% Similarity=0.319 Sum_probs=56.3
Q ss_pred HHHHHHHhhhC-CCCCC-cccHHHHHHHHHHHHHh-cCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhh
Q 028605 102 DKIEFSFQLYD-LKQQG-FIERQEVKQMVVATLTE-SGMNLSDDVIESIIDKTFEEADTKHDGKIDKEEWRNLVLR 174 (206)
Q Consensus 102 ~~~~~~F~~~D-~~~~g-~It~~Ef~~~l~~~~~~-~~~~~~~~~~~~~~~~~f~~~d~d~~g~Is~~eF~~~l~~ 174 (206)
..++.+|+.|| .+|+| .|+.+||+.++..-+.. .|...++++++.++ +..|.|++|.|+|++|+.++..
T Consensus 8 ~~l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i----~~~D~n~dG~v~f~eF~~li~~ 79 (88)
T cd05027 8 VALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVM----ETLDSDGDGECDFQEFMAFVAM 79 (88)
T ss_pred HHHHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHH----HHhCCCCCCcCcHHHHHHHHHH
Confidence 45788999998 89999 59999999998662211 36677887777776 7889999999999999988765
No 23
>PLN02964 phosphatidylserine decarboxylase
Probab=98.97 E-value=7.8e-09 Score=91.99 Aligned_cols=123 Identities=16% Similarity=0.268 Sum_probs=89.5
Q ss_pred hcCCCHHHHHHHHHH-HHhhccCCcCccHHHHHHhHHcCCCCCcccHHHHHHHHHhhCCCCChHHH---HHHHHhhhCCC
Q 028605 39 ETVFSVSEIEALYEL-FKKISSAVIDDGLINKVFDLFDTKHNGILDFEEFARALSIFHPNSPIDDK---IEFSFQLYDLK 114 (206)
Q Consensus 39 ~~~~s~~e~~~l~~~-F~~~d~~~~~~g~i~~lf~~~d~~~~g~i~f~ef~~~~~~~~~~~~~~~~---~~~~F~~~D~~ 114 (206)
...+++.++...-+. +..+... ....+...|..+|+|++|.+ +..++..+....+.+++ ++.+|+.+|.+
T Consensus 118 ~~~~s~n~lv~~~e~~~t~f~~k--qi~elkeaF~lfD~dgdG~i----Lg~ilrslG~~~pte~e~~fi~~mf~~~D~D 191 (644)
T PLN02964 118 TNRLSKNTLVGYCELDLFDFVTQ--EPESACESFDLLDPSSSNKV----VGSIFVSCSIEDPVETERSFARRILAIVDYD 191 (644)
T ss_pred cCCCCHHHhhhheeecHhhccHH--HHHHHHHHHHHHCCCCCCcC----HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCC
Confidence 456788888776655 2223322 34566679999999999987 33344444311244444 89999999999
Q ss_pred CCCcccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhhC
Q 028605 115 QQGFIERQEVKQMVVATLTESGMNLSDDVIESIIDKTFEEADTKHDGKIDKEEWRNLVLRH 175 (206)
Q Consensus 115 ~~g~It~~Ef~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~d~~g~Is~~eF~~~l~~~ 175 (206)
++|.|+++||..++..+ +...++++ +..+|+.+|.|++|.|+++||..++...
T Consensus 192 gdG~IdfdEFl~lL~~l----g~~~seEE----L~eaFk~fDkDgdG~Is~dEL~~vL~~~ 244 (644)
T PLN02964 192 EDGQLSFSEFSDLIKAF----GNLVAANK----KEELFKAADLNGDGVVTIDELAALLALQ 244 (644)
T ss_pred CCCeEcHHHHHHHHHHh----ccCCCHHH----HHHHHHHhCCCCCCcCCHHHHHHHHHhc
Confidence 99999999999997653 44555555 4566689999999999999999998874
No 24
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=98.95 E-value=5.4e-09 Score=71.59 Aligned_cols=86 Identities=21% Similarity=0.302 Sum_probs=67.9
Q ss_pred hHHHHHHHHhhhCCCCCCcccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhhChhHH
Q 028605 100 IDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLTESGMNLSDDVIESIIDKTFEEADTKHDGKIDKEEWRNLVLRHPSLL 179 (206)
Q Consensus 100 ~~~~~~~~F~~~D~~~~g~It~~Ef~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~d~~g~Is~~eF~~~l~~~~~~~ 179 (206)
....++.+|+.+|.+++|.|+.+|+..++... .++.+++..+ +..+|.+++|.|+++||+.++....
T Consensus 8 ~~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~------~~~~~ev~~i----~~~~d~~~~g~I~~~eF~~~~~~~~--- 74 (96)
T smart00027 8 DKAKYEQIFRSLDKNQDGTVTGAQAKPILLKS------GLPQTLLAKI----WNLADIDNDGELDKDEFALAMHLIY--- 74 (96)
T ss_pred HHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHc------CCCHHHHHHH----HHHhcCCCCCCcCHHHHHHHHHHHH---
Confidence 34568899999999999999999999997542 3566665554 4789999999999999998887643
Q ss_pred hhhhhhhhhhhhhccCcceecc
Q 028605 180 KNMTLQYLKDITTTFPSFVFHS 201 (206)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~ 201 (206)
.+....+|..++|+.|.++
T Consensus 75 ---~~~~g~~~~~~~~~~~~~~ 93 (96)
T smart00027 75 ---RKLNGYPIPASLPPSLIPP 93 (96)
T ss_pred ---HHHcCCCCCccCCHhhcCC
Confidence 2334678888888888765
No 25
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=98.94 E-value=7.1e-09 Score=70.60 Aligned_cols=71 Identities=20% Similarity=0.329 Sum_probs=53.9
Q ss_pred HHHHHHHhhhC-CCCCC-cccHHHHHHHHHHHHHh-cCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhhCh
Q 028605 102 DKIEFSFQLYD-LKQQG-FIERQEVKQMVVATLTE-SGMNLSDDVIESIIDKTFEEADTKHDGKIDKEEWRNLVLRHP 176 (206)
Q Consensus 102 ~~~~~~F~~~D-~~~~g-~It~~Ef~~~l~~~~~~-~~~~~~~~~~~~~~~~~f~~~d~d~~g~Is~~eF~~~l~~~~ 176 (206)
..+..+|+.|| +||+| .|+.+||+.++...+.. .+...++.+++.++ +.+|.|++|.|+|+||+.++....
T Consensus 10 ~~~~~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~----~elD~n~dG~Idf~EF~~l~~~l~ 83 (93)
T cd05026 10 DTLIRIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIM----NDLDSNKDNEVDFNEFVVLVAALT 83 (93)
T ss_pred HHHHHHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHH----HHhCCCCCCCCCHHHHHHHHHHHH
Confidence 34677899998 78998 59999999998653221 23334555555544 899999999999999999987643
No 26
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.93 E-value=1.2e-08 Score=82.39 Aligned_cols=122 Identities=25% Similarity=0.357 Sum_probs=92.4
Q ss_pred HHHHHHHHHHhhccCCcCccHHHH---------------------HHhHHcCCCCCcccHHHHHHHHHhhC------CCC
Q 028605 46 EIEALYELFKKISSAVIDDGLINK---------------------VFDLFDTKHNGILDFEEFARALSIFH------PNS 98 (206)
Q Consensus 46 e~~~l~~~F~~~d~~~~~~g~i~~---------------------lf~~~d~~~~g~i~f~ef~~~~~~~~------~~~ 98 (206)
.-.++...+..+|.+ ++|.|+. -+...|.|.+|.|+|++|...+.... ...
T Consensus 75 ~~~rl~~l~~~iD~~--~Dgfv~~~El~~wi~~s~k~~v~~~~~~~~~~~d~~~Dg~i~~eey~~~~~~~~~~~~~~~d~ 152 (325)
T KOG4223|consen 75 SQERLGKLVPKIDSD--SDGFVTESELKAWIMQSQKKYVVEEAARRWDEYDKNKDGFITWEEYLPQTYGRVDLPDEFPDE 152 (325)
T ss_pred hHHHHHHHHhhhcCC--CCCceeHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeHHHhhhhhhhcccCccccccc
Confidence 566788888999987 8888876 66778899999999999999886431 100
Q ss_pred C---h----HHHHHHHHhhhCCCCCCcccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHH
Q 028605 99 P---I----DDKIEFSFQLYDLKQQGFIERQEVKQMVVATLTESGMNLSDDVIESIIDKTFEEADTKHDGKIDKEEWRNL 171 (206)
Q Consensus 99 ~---~----~~~~~~~F~~~D~~~~g~It~~Ef~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~d~~g~Is~~eF~~~ 171 (206)
. . ..+-+.-|+..|.|++|.+|++||..++ .+.-.+....-++...+...|+|+||.|+++||+.-
T Consensus 153 e~~~~~~km~~rDe~rFk~AD~d~dg~lt~EEF~aFL-------HPEe~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd 225 (325)
T KOG4223|consen 153 EDNEEYKKMIARDEERFKAADQDGDGSLTLEEFTAFL-------HPEEHPHMKDIVIAETLEDIDKNGDGKISLEEFIGD 225 (325)
T ss_pred hhcHHHHHHHHHHHHHHhhcccCCCCcccHHHHHhcc-------ChhhcchHHHHHHHHHHhhcccCCCCceeHHHHHhH
Confidence 1 1 1223557999999999999999999985 333333444445666668899999999999999988
Q ss_pred HhhCh
Q 028605 172 VLRHP 176 (206)
Q Consensus 172 l~~~~ 176 (206)
+..++
T Consensus 226 ~~~~~ 230 (325)
T KOG4223|consen 226 LYSHE 230 (325)
T ss_pred Hhhcc
Confidence 87655
No 27
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=98.91 E-value=3.5e-08 Score=82.71 Aligned_cols=120 Identities=20% Similarity=0.250 Sum_probs=86.1
Q ss_pred HHHHHHHhhccCCcCccHHHH------------------HH--hHHcCCCCCcccHHHHHHHHHhhCCC-----------
Q 028605 49 ALYELFKKISSAVIDDGLINK------------------VF--DLFDTKHNGILDFEEFARALSIFHPN----------- 97 (206)
Q Consensus 49 ~l~~~F~~~d~~~~~~g~i~~------------------lf--~~~d~~~~g~i~f~ef~~~~~~~~~~----------- 97 (206)
.+.+.|+..|.. ++|+++. +. +....+.+|.+.|.+....+..-...
T Consensus 465 dL~~eF~~~D~~--ksG~lsis~Wa~~mE~i~~L~LPWr~L~~kla~~s~d~~v~Y~~~~~~l~~e~~~~ea~~slvetL 542 (631)
T KOG0377|consen 465 DLEDEFRKYDPK--KSGKLSISHWAKCMENITGLNLPWRLLRPKLANGSDDGKVEYKSTLDNLDTEVILEEAGSSLVETL 542 (631)
T ss_pred HHHHHHHhcChh--hcCeeeHHHHHHHHHHHhcCCCcHHHhhhhccCCCcCcceehHhHHHHhhhhhHHHHHHhHHHHHH
Confidence 344667777776 6666654 11 11223345667776655554321100
Q ss_pred CChHHHHHHHHhhhCCCCCCcccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhh
Q 028605 98 SPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLTESGMNLSDDVIESIIDKTFEEADTKHDGKIDKEEWRNLVLR 174 (206)
Q Consensus 98 ~~~~~~~~~~F~~~D~~~~g~It~~Ef~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~d~~g~Is~~eF~~~l~~ 174 (206)
......++.+|+.+|+|++|.|+.+||+.+++-+.......++++++.++. +.+|.|+||.|++.||..+++-
T Consensus 543 Yr~ks~LetiF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la----~~mD~NkDG~IDlNEfLeAFrl 615 (631)
T KOG0377|consen 543 YRNKSSLETIFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELA----RSMDLNKDGKIDLNEFLEAFRL 615 (631)
T ss_pred HhchhhHHHHHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHH----HhhccCCCCcccHHHHHHHHhh
Confidence 012233678999999999999999999999998888888899999888877 7999999999999999999875
No 28
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=98.90 E-value=1.7e-08 Score=68.57 Aligned_cols=74 Identities=19% Similarity=0.349 Sum_probs=56.7
Q ss_pred hHHHHHHHHhhhC-CCCCCc-ccHHHHHHHHHHHHHh-cCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhhCh
Q 028605 100 IDDKIEFSFQLYD-LKQQGF-IERQEVKQMVVATLTE-SGMNLSDDVIESIIDKTFEEADTKHDGKIDKEEWRNLVLRHP 176 (206)
Q Consensus 100 ~~~~~~~~F~~~D-~~~~g~-It~~Ef~~~l~~~~~~-~~~~~~~~~~~~~~~~~f~~~d~d~~g~Is~~eF~~~l~~~~ 176 (206)
..+.++.+|+.|| .+++|+ |+.+||+.++...+.. .+...+.++++.++ ..+|.|++|.|+|++|+.++....
T Consensus 7 ~~~~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~----~~~D~d~~G~I~f~eF~~l~~~~~ 82 (92)
T cd05025 7 AMETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIM----KELDENGDGEVDFQEFVVLVAALT 82 (92)
T ss_pred HHHHHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHH----HHHCCCCCCcCcHHHHHHHHHHHH
Confidence 3456889999997 999995 9999999998652221 23345666655555 789999999999999999887644
Q ss_pred h
Q 028605 177 S 177 (206)
Q Consensus 177 ~ 177 (206)
.
T Consensus 83 ~ 83 (92)
T cd05025 83 V 83 (92)
T ss_pred H
Confidence 3
No 29
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.89 E-value=1.2e-08 Score=69.66 Aligned_cols=72 Identities=21% Similarity=0.352 Sum_probs=56.9
Q ss_pred HHHHHHHHhhhCC-CC-CCcccHHHHHHHHHHHHH-hcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhhCh
Q 028605 101 DDKIEFSFQLYDL-KQ-QGFIERQEVKQMVVATLT-ESGMNLSDDVIESIIDKTFEEADTKHDGKIDKEEWRNLVLRHP 176 (206)
Q Consensus 101 ~~~~~~~F~~~D~-~~-~g~It~~Ef~~~l~~~~~-~~~~~~~~~~~~~~~~~~f~~~d~d~~g~Is~~eF~~~l~~~~ 176 (206)
...+..+|+.||. ++ +|.|+.+|++.++..... ..+...+.++++.++ ..+|.+++|.|+|++|+.++....
T Consensus 7 ~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~----~~~D~~~dg~I~f~eF~~l~~~~~ 81 (94)
T cd05031 7 MESLILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIM----KDLDQNRDGKVNFEEFVSLVAGLS 81 (94)
T ss_pred HHHHHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHH----HHhCCCCCCcCcHHHHHHHHHHHH
Confidence 4558889999997 97 699999999999865222 145566777666655 789999999999999999887543
No 30
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=98.87 E-value=6.8e-09 Score=65.88 Aligned_cols=61 Identities=26% Similarity=0.432 Sum_probs=52.1
Q ss_pred HHHHHhHHcCCCCCcccHHHHHHHHHhhCCC---CChHHHHHHHHhhhCCCCCCcccHHHHHHH
Q 028605 67 INKVFDLFDTKHNGILDFEEFARALSIFHPN---SPIDDKIEFSFQLYDLKQQGFIERQEVKQM 127 (206)
Q Consensus 67 i~~lf~~~d~~~~g~i~f~ef~~~~~~~~~~---~~~~~~~~~~F~~~D~~~~g~It~~Ef~~~ 127 (206)
+..+|..+|.+++|.|+.+|+..++...... ....+.+..+|+.+|++++|.|+++||..+
T Consensus 2 l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~ 65 (66)
T PF13499_consen 2 LKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNF 65 (66)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHH
T ss_pred HHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhcc
Confidence 5668999999999999999999999887642 234456777899999999999999999986
No 31
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=98.83 E-value=3e-08 Score=66.73 Aligned_cols=68 Identities=18% Similarity=0.333 Sum_probs=55.7
Q ss_pred HHHHHHhhhCC-CC-CCcccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhhC
Q 028605 103 KIEFSFQLYDL-KQ-QGFIERQEVKQMVVATLTESGMNLSDDVIESIIDKTFEEADTKHDGKIDKEEWRNLVLRH 175 (206)
Q Consensus 103 ~~~~~F~~~D~-~~-~g~It~~Ef~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~d~~g~Is~~eF~~~l~~~ 175 (206)
.+..+|..||. +| +|+|+.+||+.++... ...|..++++++++++ +..|.|++|.|+|+||+.++...
T Consensus 11 ~~i~~F~~y~~~~~~~g~Is~~EL~~~l~~~-~~lg~k~t~~ev~~m~----~~~D~d~dG~Idf~EFv~lm~~l 80 (88)
T cd05029 11 LLVAIFHKYSGREGDKNTLSKKELKELIQKE-LTIGSKLQDAEIAKLM----EDLDRNKDQEVNFQEYVTFLGAL 80 (88)
T ss_pred HHHHHHHHHHccCCCCCEECHHHHHHHHHHH-HhcCCCCCHHHHHHHH----HHhcCCCCCCCcHHHHHHHHHHH
Confidence 36778999998 77 8999999999998531 1247788988877766 78899999999999999888763
No 32
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=98.82 E-value=5.5e-08 Score=74.60 Aligned_cols=96 Identities=20% Similarity=0.216 Sum_probs=84.7
Q ss_pred cHHHHHHhHHcCCCCCcccHHHHHHHHHhhCCCCChHHHHHHHHhhhCCCCCCcccHHHHHHHHHHHHHhcCCCCCHHHH
Q 028605 65 GLINKVFDLFDTKHNGILDFEEFARALSIFHPNSPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLTESGMNLSDDVI 144 (206)
Q Consensus 65 g~i~~lf~~~d~~~~g~i~f~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~It~~Ef~~~l~~~~~~~~~~~~~~~~ 144 (206)
..+...|..+|.++.|.|+=+|...++.......-+.+-++.+..+||.+++|.|.++||+.+|+.+
T Consensus 57 ~~~~~~f~~vD~d~sg~i~~~eLq~aLsn~~~~~Fs~~TcrlmI~mfd~~~~G~i~f~EF~~Lw~~i------------- 123 (221)
T KOG0037|consen 57 PQLAGWFQSVDRDRSGRILAKELQQALSNGTWSPFSIETCRLMISMFDRDNSGTIGFKEFKALWKYI------------- 123 (221)
T ss_pred HHHHHHHHhhCccccccccHHHHHHHhhcCCCCCCCHHHHHHHHHHhcCCCCCccCHHHHHHHHHHH-------------
Confidence 3566799999999999999999999997555545677889999999999999999999999998775
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHhh
Q 028605 145 ESIIDKTFEEADTKHDGKIDKEEWRNLVLR 174 (206)
Q Consensus 145 ~~~~~~~f~~~d~d~~g~Is~~eF~~~l~~ 174 (206)
.-++.+|+.+|.|+.|.|+..|+.++|..
T Consensus 124 -~~Wr~vF~~~D~D~SG~I~~sEL~~Al~~ 152 (221)
T KOG0037|consen 124 -NQWRNVFRTYDRDRSGTIDSSELRQALTQ 152 (221)
T ss_pred -HHHHHHHHhcccCCCCcccHHHHHHHHHH
Confidence 23788999999999999999999999976
No 33
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.80 E-value=1.8e-08 Score=71.13 Aligned_cols=64 Identities=23% Similarity=0.392 Sum_probs=52.6
Q ss_pred ChHHHHHHHHhhhCCCCCCcccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhh
Q 028605 99 PIDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLTESGMNLSDDVIESIIDKTFEEADTKHDGKIDKEEWRNLVLR 174 (206)
Q Consensus 99 ~~~~~~~~~F~~~D~~~~g~It~~Ef~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~d~~g~Is~~eF~~~l~~ 174 (206)
.....+.++|..+|.|+||.|+.+|+..+. . .. .+..+..+|..+|.|+||.||++||+..+.+
T Consensus 45 ~~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~------l--~~----~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl~~ 108 (116)
T cd00252 45 MCKDPVGWMFNQLDGNYDGKLSHHELAPIR------L--DP----NEHCIKPFFESCDLDKDGSISLDEWCYCFIK 108 (116)
T ss_pred HHHHHHHHHHHHHCCCCCCcCCHHHHHHHH------c--cc----hHHHHHHHHHHHCCCCCCCCCHHHHHHHHhC
Confidence 455679999999999999999999999863 1 11 2345667779999999999999999999943
No 34
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=98.76 E-value=8e-08 Score=64.60 Aligned_cols=71 Identities=20% Similarity=0.343 Sum_probs=54.4
Q ss_pred HHHHHHHHhhhCC--CCCCcccHHHHHHHHHHHHHh-cCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhhC
Q 028605 101 DDKIEFSFQLYDL--KQQGFIERQEVKQMVVATLTE-SGMNLSDDVIESIIDKTFEEADTKHDGKIDKEEWRNLVLRH 175 (206)
Q Consensus 101 ~~~~~~~F~~~D~--~~~g~It~~Ef~~~l~~~~~~-~~~~~~~~~~~~~~~~~f~~~d~d~~g~Is~~eF~~~l~~~ 175 (206)
.+.++.+|..||+ +++|.|+.+||..++...+.. .+...+.++++.+ +..+|.+++|.|+|++|+.++...
T Consensus 7 ~~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i----~~~~d~~~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 7 IETIIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKI----MKDLDVNKDGKVDFQEFLVLIGKL 80 (88)
T ss_pred HHHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHH----HHHhccCCCCcCcHHHHHHHHHHH
Confidence 4558889999999 899999999999997642211 1123446665554 488999999999999999988754
No 35
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=98.75 E-value=4.7e-08 Score=61.91 Aligned_cols=62 Identities=29% Similarity=0.469 Sum_probs=49.9
Q ss_pred HHHHhhhCCCCCCcccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhhCh
Q 028605 105 EFSFQLYDLKQQGFIERQEVKQMVVATLTESGMNLSDDVIESIIDKTFEEADTKHDGKIDKEEWRNLVLRHP 176 (206)
Q Consensus 105 ~~~F~~~D~~~~g~It~~Ef~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~d~~g~Is~~eF~~~l~~~~ 176 (206)
+.+|+.+|.+++|.|+.+|+..++..+ | .+.+++. .++..+|.+++|.|+++||+.++...+
T Consensus 2 ~~~F~~~D~~~~G~i~~~el~~~l~~~----g--~~~~~~~----~i~~~~d~~~~g~i~~~ef~~~~~~~~ 63 (67)
T cd00052 2 DQIFRSLDPDGDGLISGDEARPFLGKS----G--LPRSVLA----QIWDLADTDKDGKLDKEEFAIAMHLIA 63 (67)
T ss_pred hHHHHHhCCCCCCcCcHHHHHHHHHHc----C--CCHHHHH----HHHHHhcCCCCCcCCHHHHHHHHHHHH
Confidence 468999999999999999999987543 3 3555544 445899999999999999999887543
No 36
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=98.71 E-value=1.3e-07 Score=63.75 Aligned_cols=71 Identities=17% Similarity=0.256 Sum_probs=53.8
Q ss_pred HHHHHHHHhh-hCCCCCC-cccHHHHHHHHHHHHHh-cCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhhC
Q 028605 101 DDKIEFSFQL-YDLKQQG-FIERQEVKQMVVATLTE-SGMNLSDDVIESIIDKTFEEADTKHDGKIDKEEWRNLVLRH 175 (206)
Q Consensus 101 ~~~~~~~F~~-~D~~~~g-~It~~Ef~~~l~~~~~~-~~~~~~~~~~~~~~~~~f~~~d~d~~g~Is~~eF~~~l~~~ 175 (206)
...+..+|+. +|++|+| .|+.+||+.++..-+.. .+...++.+++.++ +.+|.|+||.|+|+||+.++...
T Consensus 8 i~~l~~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll----~~~D~d~DG~I~f~EF~~l~~~l 81 (89)
T cd05023 8 IESLIAVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMM----KKLDLNSDGQLDFQEFLNLIGGL 81 (89)
T ss_pred HHHHHHHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHH----HHcCCCCCCcCcHHHHHHHHHHH
Confidence 3457889999 6888976 99999999998653221 12344556665555 89999999999999999988763
No 37
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=98.69 E-value=1.2e-07 Score=58.19 Aligned_cols=61 Identities=34% Similarity=0.566 Sum_probs=50.5
Q ss_pred HHHHHhhhCCCCCCcccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHH
Q 028605 104 IEFSFQLYDLKQQGFIERQEVKQMVVATLTESGMNLSDDVIESIIDKTFEEADTKHDGKIDKEEWRNLV 172 (206)
Q Consensus 104 ~~~~F~~~D~~~~g~It~~Ef~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~d~~g~Is~~eF~~~l 172 (206)
+..+|..+|.+++|.|+.+||..++..+ +...+.+.+. .+|..++.+++|.|++++|..++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~----~~~~~~~~~~----~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSL----GEGLSEEEID----EMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHh----CCCCCHHHHH----HHHHHhCCCCCCeEeHHHHHHHh
Confidence 5678999999999999999999997654 6666665544 45588999999999999998865
No 38
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=98.68 E-value=8.2e-08 Score=58.40 Aligned_cols=52 Identities=29% Similarity=0.544 Sum_probs=43.4
Q ss_pred CCCcccHHHHHHHHHHHHHhcCCC-CCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhh
Q 028605 115 QQGFIERQEVKQMVVATLTESGMN-LSDDVIESIIDKTFEEADTKHDGKIDKEEWRNLVLR 174 (206)
Q Consensus 115 ~~g~It~~Ef~~~l~~~~~~~~~~-~~~~~~~~~~~~~f~~~d~d~~g~Is~~eF~~~l~~ 174 (206)
.+|.|+.+||+.++.. .|.. ++++++..++ ..+|.|++|.|+|+||+.++..
T Consensus 1 ~~G~i~~~~~~~~l~~----~g~~~~s~~e~~~l~----~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 1 KDGKITREEFRRALSK----LGIKDLSEEEVDRLF----REFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSSEEEHHHHHHHHHH----TTSSSSCHHHHHHHH----HHHTTSSSSSEEHHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHH----hCCCCCCHHHHHHHH----HhcccCCCCCCCHHHHHHHHHh
Confidence 3799999999999743 3777 9988865555 8999999999999999998753
No 39
>KOG4223 consensus Reticulocalbin, calumenin, DNA supercoiling factor, and related Ca2+-binding proteins of the CREC family (EF-Hand protein superfamily) [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.62 E-value=2e-07 Score=75.48 Aligned_cols=116 Identities=24% Similarity=0.298 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHHhhccCCcCccHHHH----------------------HHhHHcCCCCCcccHHHHHHHHHhhCCCC---
Q 028605 44 VSEIEALYELFKKISSAVIDDGLINK----------------------VFDLFDTKHNGILDFEEFARALSIFHPNS--- 98 (206)
Q Consensus 44 ~~e~~~l~~~F~~~d~~~~~~g~i~~----------------------lf~~~d~~~~g~i~f~ef~~~~~~~~~~~--- 98 (206)
.+.+.+-..+|+.-|.+ ++|.++. =+.-+|+|++|.|+++||+.-+.....++
T Consensus 159 ~km~~rDe~rFk~AD~d--~dg~lt~EEF~aFLHPEe~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~~~~~~~ep 236 (325)
T KOG4223|consen 159 KKMIARDEERFKAADQD--GDGSLTLEEFTAFLHPEEHPHMKDIVIAETLEDIDKNGDGKISLEEFIGDLYSHEGNEEEP 236 (325)
T ss_pred HHHHHHHHHHHhhcccC--CCCcccHHHHHhccChhhcchHHHHHHHHHHhhcccCCCCceeHHHHHhHHhhccCCCCCc
Confidence 45677778899999998 8887776 34558899999999999998876554321
Q ss_pred -ChHHHHHHHHhhhCCCCCCcccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHH
Q 028605 99 -PIDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLTESGMNLSDDVIESIIDKTFEEADTKHDGKIDKEEWR 169 (206)
Q Consensus 99 -~~~~~~~~~F~~~D~~~~g~It~~Ef~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~d~~g~Is~~eF~ 169 (206)
....+-+..+...|+|++|+++.+|+..-+ .=.+......++ ..++-..|.|+||++|++|.+
T Consensus 237 eWv~~Ere~F~~~~DknkDG~L~~dEl~~WI----~P~~~d~A~~EA----~hL~~eaD~dkD~kLs~eEIl 300 (325)
T KOG4223|consen 237 EWVLTEREQFFEFRDKNKDGKLDGDELLDWI----LPSEQDHAKAEA----RHLLHEADEDKDGKLSKEEIL 300 (325)
T ss_pred ccccccHHHHHHHhhcCCCCccCHHHHhccc----CCCCccHHHHHH----HHHhhhhccCccccccHHHHh
Confidence 122223567777799999999999999642 111223333444 444478999999999999964
No 40
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.58 E-value=4.9e-07 Score=65.73 Aligned_cols=129 Identities=20% Similarity=0.321 Sum_probs=99.3
Q ss_pred HHHHHhhccCCcCccHHHHHHhHHcCCCCCcccHHHHHHHHHhhCCCCChHHHHHHHHhhhCCCCCCcccHHHHHHHHHH
Q 028605 51 YELFKKISSAVIDDGLINKVFDLFDTKHNGILDFEEFARALSIFHPNSPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVA 130 (206)
Q Consensus 51 ~~~F~~~d~~~~~~g~i~~lf~~~d~~~~g~i~f~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~It~~Ef~~~l~~ 130 (206)
...|..++.. .-.....-|+.+|.|+||.|+-++...++..+... .+++.+..++. ++.|.|.+--|..+.
T Consensus 20 SnvFamf~q~--QIqEfKEAF~~mDqnrDG~IdkeDL~d~~aSlGk~-~~d~elDaM~~----Ea~gPINft~FLTmf-- 90 (171)
T KOG0031|consen 20 SNVFAMFDQS--QIQEFKEAFNLMDQNRDGFIDKEDLRDMLASLGKI-ASDEELDAMMK----EAPGPINFTVFLTMF-- 90 (171)
T ss_pred chHHHHhhHH--HHHHHHHHHHHHhccCCCcccHHHHHHHHHHcCCC-CCHHHHHHHHH----hCCCCeeHHHHHHHH--
Confidence 3567777755 44455569999999999999999999999988875 77777777775 578899999888875
Q ss_pred HHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhhChhHHhhhhhhhhhhhhhccCc
Q 028605 131 TLTESGMNLSDDVIESIIDKTFEEADTKHDGKIDKEEWRNLVLRHPSLLKNMTLQYLKDITTTFPS 196 (206)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~f~~~d~d~~g~Is~~eF~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 196 (206)
|..++-...++.+..+|+.||.++.|.|.-+.++.+|...- .-|...-+++|...+|+
T Consensus 91 -----GekL~gtdpe~~I~~AF~~FD~~~~G~I~~d~lre~Ltt~g---Dr~~~eEV~~m~r~~p~ 148 (171)
T KOG0031|consen 91 -----GEKLNGTDPEEVILNAFKTFDDEGSGKIDEDYLRELLTTMG---DRFTDEEVDEMYREAPI 148 (171)
T ss_pred -----HHHhcCCCHHHHHHHHHHhcCccCCCccCHHHHHHHHHHhc---ccCCHHHHHHHHHhCCc
Confidence 33333334566788899999999999999999999998732 34666666677777665
No 41
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=98.55 E-value=2.4e-07 Score=74.94 Aligned_cols=104 Identities=20% Similarity=0.346 Sum_probs=87.9
Q ss_pred HHhHHcCCCCCcccHHHHHHHHHhhCCCCChHHHHHHHHhhhCCCCCCcccHHHHHHHHHHHHHhcCCCCCHHHHHHHHH
Q 028605 70 VFDLFDTKHNGILDFEEFARALSIFHPNSPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLTESGMNLSDDVIESIID 149 (206)
Q Consensus 70 lf~~~d~~~~g~i~f~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~It~~Ef~~~l~~~~~~~~~~~~~~~~~~~~~ 149 (206)
+|..||.+++|.++|.|++..++.+|........++.+|++|+...||++...+|..++...+.-. .+. +-
T Consensus 264 ~f~LFde~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~v~eDg~~ge~~ls~ilq~~lgv~--~l~-------v~ 334 (412)
T KOG4666|consen 264 TFMLFDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFSVAEDGISGEHILSLILQVVLGVE--VLR-------VP 334 (412)
T ss_pred hhheecCCCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcccccccccchHHHHHHHHHhcCcc--eee-------cc
Confidence 999999999999999999999999998778889999999999999999999999988876542211 111 33
Q ss_pred HHHHHhCCCCCCcccHHHHHHHHhhChhHHhhh
Q 028605 150 KTFEEADTKHDGKIDKEEWRNLVLRHPSLLKNM 182 (206)
Q Consensus 150 ~~f~~~d~d~~g~Is~~eF~~~l~~~~~~~~~~ 182 (206)
.+|...+...+|.|++.+|.++...+|.+...+
T Consensus 335 ~lf~~i~q~d~~ki~~~~f~~fa~~~p~~a~~~ 367 (412)
T KOG4666|consen 335 VLFPSIEQKDDPKIYASNFRKFAATEPNLALSE 367 (412)
T ss_pred ccchhhhcccCcceeHHHHHHHHHhCchhhhhh
Confidence 466888888899999999999999999987544
No 42
>KOG0030 consensus Myosin essential light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=98.52 E-value=1.8e-06 Score=61.75 Aligned_cols=105 Identities=14% Similarity=0.136 Sum_probs=85.3
Q ss_pred cHHHHHHhHHcCCCCCcccHHHHHHHHHhhCCCCChHHHHHHHHhhhCCC--CCCcccHHHHHHHHHHHHHhcCCCCCHH
Q 028605 65 GLINKVFDLFDTKHNGILDFEEFARALSIFHPNSPIDDKIEFSFQLYDLK--QQGFIERQEVKQMVVATLTESGMNLSDD 142 (206)
Q Consensus 65 g~i~~lf~~~d~~~~g~i~f~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~--~~g~It~~Ef~~~l~~~~~~~~~~~~~~ 142 (206)
..+..+|..||..+||+|++.+.-.++..+..+ |+...+......++.+ +-..|++++|.-++.++.+. ...-+.+
T Consensus 11 ~e~ke~F~lfD~~gD~ki~~~q~gdvlRalG~n-PT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vakn-k~q~t~e 88 (152)
T KOG0030|consen 11 EEFKEAFLLFDRTGDGKISGSQVGDVLRALGQN-PTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKN-KDQGTYE 88 (152)
T ss_pred HHHHHHHHHHhccCcccccHHHHHHHHHHhcCC-CcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhc-cccCcHH
Confidence 445569999999999999999999999888875 8888888898888777 56789999999998876444 3344444
Q ss_pred HHHHHHHHHHHHhCCCCCCcccHHHHHHHHhhC
Q 028605 143 VIESIIDKTFEEADTKHDGKIDKEEWRNLVLRH 175 (206)
Q Consensus 143 ~~~~~~~~~f~~~d~d~~g~Is~~eF~~~l~~~ 175 (206)
+.-+- ++.||++++|.|.+.|++++|...
T Consensus 89 dfveg----LrvFDkeg~G~i~~aeLRhvLttl 117 (152)
T KOG0030|consen 89 DFVEG----LRVFDKEGNGTIMGAELRHVLTTL 117 (152)
T ss_pred HHHHH----HHhhcccCCcceeHHHHHHHHHHH
Confidence 43333 389999999999999999999773
No 43
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=98.50 E-value=6.8e-07 Score=60.18 Aligned_cols=65 Identities=17% Similarity=0.168 Sum_probs=53.7
Q ss_pred HHHHHhHHcC-CCCCcccHHHHHHHHHhhCCCCChH-HHHHHHHhhhCCCCCCcccHHHHHHHHHHH
Q 028605 67 INKVFDLFDT-KHNGILDFEEFARALSIFHPNSPID-DKIEFSFQLYDLKQQGFIERQEVKQMVVAT 131 (206)
Q Consensus 67 i~~lf~~~d~-~~~g~i~f~ef~~~~~~~~~~~~~~-~~~~~~F~~~D~~~~g~It~~Ef~~~l~~~ 131 (206)
+...|..+|+ +++|.|+..|+..++....+...+. +.+..+++.+|.|++|.|+++||..++.++
T Consensus 10 l~~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l 76 (89)
T cd05022 10 LVSNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGEL 76 (89)
T ss_pred HHHHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 4457888888 8999999999999998833222334 789999999999999999999999998665
No 44
>KOG0036 consensus Predicted mitochondrial carrier protein [Nucleotide transport and metabolism]
Probab=98.45 E-value=2.9e-06 Score=70.80 Aligned_cols=99 Identities=24% Similarity=0.398 Sum_probs=84.9
Q ss_pred CccHHHHHHhHHcCCCCCcccHHHHHHHHHhhCCCCChHHHHHHHHhhhCCCCCCcccHHHHHHHHHHHHHhcCCCCCHH
Q 028605 63 DDGLINKVFDLFDTKHNGILDFEEFARALSIFHPNSPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLTESGMNLSDD 142 (206)
Q Consensus 63 ~~g~i~~lf~~~d~~~~g~i~f~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~It~~Ef~~~l~~~~~~~~~~~~~~ 142 (206)
....+..+|..+|.+++|.++..+....+..+....+..+.+..+|+..|.|.+|.++++||++-+..
T Consensus 12 r~~r~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~------------ 79 (463)
T KOG0036|consen 12 RDIRIRCLFKELDSKNDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDN------------ 79 (463)
T ss_pred HHHHHHHHHHHhccCCCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHHH------------
Confidence 45677889999999999999999999998887765577888899999999999999999999998632
Q ss_pred HHHHHHHHHHHHhCCCCCCcccHHHHHHHHhh
Q 028605 143 VIESIIDKTFEEADTKHDGKIDKEEWRNLVLR 174 (206)
Q Consensus 143 ~~~~~~~~~f~~~d~d~~g~Is~~eF~~~l~~ 174 (206)
-+.-+..+|...|.+.||.|..+|..+.++.
T Consensus 80 -~E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~ 110 (463)
T KOG0036|consen 80 -KELELYRIFQSIDLEHDGKIDPNEIWRYLKD 110 (463)
T ss_pred -hHHHHHHHHhhhccccCCccCHHHHHHHHHH
Confidence 1223567889999999999999999888876
No 45
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=98.44 E-value=1.1e-06 Score=74.21 Aligned_cols=127 Identities=20% Similarity=0.368 Sum_probs=98.8
Q ss_pred CCCHHHHHHHHHHHHhhccCCcCccHHHH------------------HHhH----HcCCCCCcccHHHHHHHHHhhCCCC
Q 028605 41 VFSVSEIEALYELFKKISSAVIDDGLINK------------------VFDL----FDTKHNGILDFEEFARALSIFHPNS 98 (206)
Q Consensus 41 ~~s~~e~~~l~~~F~~~d~~~~~~g~i~~------------------lf~~----~d~~~~g~i~f~ef~~~~~~~~~~~ 98 (206)
.||-+....++-.|-.+|.+ .+|.+++ +|.. +-...+|+++|++|+.++..... .
T Consensus 271 ~FS~e~f~viy~kFweLD~D--hd~lidk~~L~ry~d~tlt~~ivdRIFs~v~r~~~~~~eGrmdykdFv~FilA~e~-k 347 (493)
T KOG2562|consen 271 YFSYEHFYVIYCKFWELDTD--HDGLIDKEDLKRYGDHTLTERIVDRIFSQVPRGFTVKVEGRMDYKDFVDFILAEED-K 347 (493)
T ss_pred heeHHHHHHHHHHHhhhccc--cccccCHHHHHHHhccchhhHHHHHHHhhccccceeeecCcccHHHHHHHHHHhcc-C
Confidence 47888899999999999999 8887776 6662 22345899999999999987766 3
Q ss_pred ChHHHHHHHHhhhCCCCCCcccHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHH
Q 028605 99 PIDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLTESG-MNLSDDVIESIIDKTFEEADTKHDGKIDKEEWRN 170 (206)
Q Consensus 99 ~~~~~~~~~F~~~D~~~~g~It~~Ef~~~l~~~~~~~~-~~~~~~~~~~~~~~~f~~~d~d~~g~Is~~eF~~ 170 (206)
.+.+-++..|+.+|-+|+|.|+..|+.-+.....+.+- ....+--++.++.+++....+...+.|+.++|..
T Consensus 348 ~t~~SleYwFrclDld~~G~Lt~~el~~fyeeq~~rm~~~~~e~l~fed~l~qi~DMvkP~~~~kItLqDlk~ 420 (493)
T KOG2562|consen 348 DTPASLEYWFRCLDLDGDGILTLNELRYFYEEQLQRMECMGQEALPFEDALCQIRDMVKPEDENKITLQDLKG 420 (493)
T ss_pred CCccchhhheeeeeccCCCcccHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHhCccCCCceeHHHHhh
Confidence 66677999999999999999999999988765554321 1111122566677778888888889999999987
No 46
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=98.43 E-value=1.4e-06 Score=53.28 Aligned_cols=61 Identities=21% Similarity=0.381 Sum_probs=53.3
Q ss_pred HHHHHhHHcCCCCCcccHHHHHHHHHhhCCCCChHHHHHHHHhhhCCCCCCcccHHHHHHHH
Q 028605 67 INKVFDLFDTKHNGILDFEEFARALSIFHPNSPIDDKIEFSFQLYDLKQQGFIERQEVKQMV 128 (206)
Q Consensus 67 i~~lf~~~d~~~~g~i~f~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~It~~Ef~~~l 128 (206)
+..+|..+|.+++|.|++++|..++..... ....+.+..+|+.+|.+++|.|+.+||..++
T Consensus 2 ~~~~f~~~d~~~~g~l~~~e~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 2 LREAFRLFDKDGDGTISADELKAALKSLGE-GLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHHhCCCCCCcCcHHHHHHHHHHhCC-CCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 455788999999999999999999988765 3677888899999999999999999998763
No 47
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.41 E-value=3.5e-07 Score=48.26 Aligned_cols=28 Identities=25% Similarity=0.443 Sum_probs=23.8
Q ss_pred HHHHHHhhhCCCCCCcccHHHHHHHHHH
Q 028605 103 KIEFSFQLYDLKQQGFIERQEVKQMVVA 130 (206)
Q Consensus 103 ~~~~~F~~~D~~~~g~It~~Ef~~~l~~ 130 (206)
+++.+|+.+|+|++|+|+++||..++.+
T Consensus 1 E~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 1 ELKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 3678999999999999999999988653
No 48
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=98.40 E-value=2.8e-06 Score=58.03 Aligned_cols=70 Identities=13% Similarity=0.219 Sum_probs=54.0
Q ss_pred HHHhHHcCCCCCcccHHHHHHHHHhhCCCCChHHHHHHHHhhhCCCCCCcccHHHHHHHHHHHHHh-cCCCCCH
Q 028605 69 KVFDLFDTKHNGILDFEEFARALSIFHPNSPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLTE-SGMNLSD 141 (206)
Q Consensus 69 ~lf~~~d~~~~g~i~f~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~It~~Ef~~~l~~~~~~-~~~~~~~ 141 (206)
.+|..+|.+++|.|+++++..++... +.+.+.+..+++.+|.+++|.|+++||..++..+.+. .|.+++.
T Consensus 14 ~~F~~~D~d~~G~Is~~el~~~l~~~---~~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~~~~~~g~~~~~ 84 (96)
T smart00027 14 QIFRSLDKNQDGTVTGAQAKPILLKS---GLPQTLLAKIWNLADIDNDGELDKDEFALAMHLIYRKLNGYPIPA 84 (96)
T ss_pred HHHHHhCCCCCCeEeHHHHHHHHHHc---CCCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHHHHHcCCCCCc
Confidence 35555566778899999999999763 2556789999999999999999999999987655432 3555543
No 49
>KOG0034 consensus Ca2+/calmodulin-dependent protein phosphatase (calcineurin subunit B), EF-Hand superfamily protein [Signal transduction mechanisms]
Probab=98.40 E-value=4.2e-06 Score=63.98 Aligned_cols=93 Identities=20% Similarity=0.279 Sum_probs=74.8
Q ss_pred HHhHHcCC-CCCcccHHHHHHHHHhhCCCCChHHHHHHHHhhhCCCCCCc-ccHHHHHHHHHHHHHhcCCCCCHHHHHHH
Q 028605 70 VFDLFDTK-HNGILDFEEFARALSIFHPNSPIDDKIEFSFQLYDLKQQGF-IERQEVKQMVVATLTESGMNLSDDVIESI 147 (206)
Q Consensus 70 lf~~~d~~-~~g~i~f~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~-It~~Ef~~~l~~~~~~~~~~~~~~~~~~~ 147 (206)
.|..++.+ ++|.++.+||..+.....+ + -...+++.++.+++|. |++++|.+++... .+.-..+ .-
T Consensus 38 rF~kl~~~~~~g~lt~eef~~i~~~~~N--p---~~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f----~~~~~~~---~K 105 (187)
T KOG0034|consen 38 RFKKLDRNNGDGYLTKEEFLSIPELALN--P---LADRIIDRFDTDGNGDPVDFEEFVRLLSVF----SPKASKR---EK 105 (187)
T ss_pred HHHHhccccccCccCHHHHHHHHHHhcC--c---HHHHHHHHHhccCCCCccCHHHHHHHHhhh----cCCccHH---HH
Confidence 78888888 9999999999999844333 2 2567899999999998 9999999997665 2233322 34
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHHhh
Q 028605 148 IDKTFEEADTKHDGKIDKEEWRNLVLR 174 (206)
Q Consensus 148 ~~~~f~~~d~d~~g~Is~~eF~~~l~~ 174 (206)
++-+|+.+|.+++|.|+.+|+.+++..
T Consensus 106 l~faF~vYD~~~~G~I~reel~~iv~~ 132 (187)
T KOG0034|consen 106 LRFAFRVYDLDGDGFISREELKQILRM 132 (187)
T ss_pred HHHHHHHhcCCCCCcCcHHHHHHHHHH
Confidence 667889999999999999999998876
No 50
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=98.39 E-value=2.6e-06 Score=57.32 Aligned_cols=64 Identities=14% Similarity=0.190 Sum_probs=53.4
Q ss_pred HHHHHhHHc-CCCCC-cccHHHHHHHHHh-----hCCCCChHHHHHHHHhhhCCCCCCcccHHHHHHHHHHH
Q 028605 67 INKVFDLFD-TKHNG-ILDFEEFARALSI-----FHPNSPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVAT 131 (206)
Q Consensus 67 i~~lf~~~d-~~~~g-~i~f~ef~~~~~~-----~~~~~~~~~~~~~~F~~~D~~~~g~It~~Ef~~~l~~~ 131 (206)
+...|..+| ++++| .|+..|+..++.. ... ..+.+.+..+++.+|.+++|.|+++||..++..+
T Consensus 10 l~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~-~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~ 80 (88)
T cd05027 10 LIDVFHQYSGREGDKHKLKKSELKELINNELSHFLEE-IKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMV 80 (88)
T ss_pred HHHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcC-CCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 344777887 68999 6999999999987 433 3677789999999999999999999999987654
No 51
>PF14658 EF-hand_9: EF-hand domain
Probab=98.38 E-value=2.1e-06 Score=53.91 Aligned_cols=61 Identities=13% Similarity=0.301 Sum_probs=52.7
Q ss_pred HHHhhhCCCCCCcccHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHHHhCCCCC-CcccHHHHHHHHhh
Q 028605 106 FSFQLYDLKQQGFIERQEVKQMVVATLTESGM-NLSDDVIESIIDKTFEEADTKHD-GKIDKEEWRNLVLR 174 (206)
Q Consensus 106 ~~F~~~D~~~~g~It~~Ef~~~l~~~~~~~~~-~~~~~~~~~~~~~~f~~~d~d~~-g~Is~~eF~~~l~~ 174 (206)
.+|.+||.++.|.|...++...|+++ +. ..++.+++.+. .+.|+++. |.|+++.|+.+|+.
T Consensus 2 ~~F~~fD~~~tG~V~v~~l~~~Lra~----~~~~p~e~~Lq~l~----~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 2 TAFDAFDTQKTGRVPVSDLITYLRAV----TGRSPEESELQDLI----NELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred cchhhcCCcCCceEeHHHHHHHHHHH----cCCCCcHHHHHHHH----HHhCCCCCCceEeHHHHHHHHHH
Confidence 37999999999999999999997766 54 67777777777 79999987 99999999999874
No 52
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=98.37 E-value=1.7e-06 Score=52.49 Aligned_cols=52 Identities=27% Similarity=0.439 Sum_probs=44.1
Q ss_pred CCCcccHHHHHHHHHhhCCCCChHHHHHHHHhhhCCCCCCcccHHHHHHHHH
Q 028605 78 HNGILDFEEFARALSIFHPNSPIDDKIEFSFQLYDLKQQGFIERQEVKQMVV 129 (206)
Q Consensus 78 ~~g~i~f~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~It~~Ef~~~l~ 129 (206)
.+|.|+.++|..++..+.....+.+.+..+|..+|.+++|.|+++||..++.
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~ 52 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQ 52 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHH
Confidence 3689999999999965544216777799999999999999999999999864
No 53
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=98.36 E-value=3.4e-06 Score=53.23 Aligned_cols=60 Identities=15% Similarity=0.221 Sum_probs=51.8
Q ss_pred HHHhHHcCCCCCcccHHHHHHHHHhhCCCCChHHHHHHHHhhhCCCCCCcccHHHHHHHHHHH
Q 028605 69 KVFDLFDTKHNGILDFEEFARALSIFHPNSPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVAT 131 (206)
Q Consensus 69 ~lf~~~d~~~~g~i~f~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~It~~Ef~~~l~~~ 131 (206)
.+|..+|.+++|.|+.+|+..++.... .+.+.+..+|+.+|.+++|.|+++||..++..+
T Consensus 3 ~~F~~~D~~~~G~i~~~el~~~l~~~g---~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~ 62 (67)
T cd00052 3 QIFRSLDPDGDGLISGDEARPFLGKSG---LPRSVLAQIWDLADTDKDGKLDKEEFAIAMHLI 62 (67)
T ss_pred HHHHHhCCCCCCcCcHHHHHHHHHHcC---CCHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHH
Confidence 368889999999999999999987652 356678999999999999999999999987544
No 54
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.34 E-value=2.5e-06 Score=57.41 Aligned_cols=66 Identities=30% Similarity=0.482 Sum_probs=50.0
Q ss_pred HHHHHHHhhhCCC--CCCcccHHHHHHHHHHHHHhcCCCCC----HHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhh
Q 028605 102 DKIEFSFQLYDLK--QQGFIERQEVKQMVVATLTESGMNLS----DDVIESIIDKTFEEADTKHDGKIDKEEWRNLVLR 174 (206)
Q Consensus 102 ~~~~~~F~~~D~~--~~g~It~~Ef~~~l~~~~~~~~~~~~----~~~~~~~~~~~f~~~d~d~~g~Is~~eF~~~l~~ 174 (206)
..+...|+.|+.. .+|.|+.+||+.++... .+..++ ++++. .+|..+|.|++|.|+|++|+.++..
T Consensus 8 ~~~~~~f~~y~~~~~~~~~Is~~El~~ll~~~---~g~~~t~~~~~~~v~----~i~~~~D~d~dG~I~f~eF~~~~~~ 79 (88)
T cd05030 8 ETIINVFHQYSVRKGHPDTLYKKEFKQLVEKE---LPNFLKKEKNQKAID----KIFEDLDTNQDGQLSFEEFLVLVIK 79 (88)
T ss_pred HHHHHHHHHHhccCCCcccCCHHHHHHHHHHH---hhHhhccCCCHHHHH----HHHHHcCCCCCCcCcHHHHHHHHHH
Confidence 4467789999765 47999999999998543 233333 55544 4558999999999999999998875
No 55
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=98.32 E-value=1e-06 Score=73.92 Aligned_cols=94 Identities=16% Similarity=0.323 Sum_probs=62.2
Q ss_pred CCCCcccHHHHHHHHHhhCCCCChHHHHHHHHhhhCCCCCCcccHHHHHHHHHHHHHhc--CC--------CCCH-HHHH
Q 028605 77 KHNGILDFEEFARALSIFHPNSPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLTES--GM--------NLSD-DVIE 145 (206)
Q Consensus 77 ~~~g~i~f~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~It~~Ef~~~l~~~~~~~--~~--------~~~~-~~~~ 145 (206)
+.+|.|+|.||+-+++.++. ++..++.+|++||.||||-|+.+||..+..-+.... |. ..+- -++.
T Consensus 211 g~~GLIsfSdYiFLlTlLS~---p~~~F~IAFKMFD~dgnG~IdkeEF~~v~~li~sQ~~~g~~hrd~~tt~~s~~~~~n 287 (489)
T KOG2643|consen 211 GESGLISFSDYIFLLTLLSI---PERNFRIAFKMFDLDGNGEIDKEEFETVQQLIRSQTSVGVRHRDHFTTGNSFKVEVN 287 (489)
T ss_pred CCCCeeeHHHHHHHHHHHcc---CcccceeeeeeeecCCCCcccHHHHHHHHHHHHhccccceecccCccccceehhhhh
Confidence 45799999999999887764 445588899999999999999999999864332211 10 1111 1222
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHhhC
Q 028605 146 SIIDKTFEEADTKHDGKIDKEEWRNLVLRH 175 (206)
Q Consensus 146 ~~~~~~f~~~d~d~~g~Is~~eF~~~l~~~ 175 (206)
..+.. --|..++++.+++++|..++.+.
T Consensus 288 saL~~--yFFG~rg~~kLs~deF~~F~e~L 315 (489)
T KOG2643|consen 288 SALLT--YFFGKRGNGKLSIDEFLKFQENL 315 (489)
T ss_pred hhHHH--HhhccCCCccccHHHHHHHHHHH
Confidence 22211 23666777777777777777664
No 56
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=98.30 E-value=5.1e-06 Score=56.46 Aligned_cols=62 Identities=13% Similarity=0.092 Sum_probs=50.3
Q ss_pred HHhHHc-CCCCC-cccHHHHHHHHHhhC----CCCChHHHHHHHHhhhCCCCCCcccHHHHHHHHHHH
Q 028605 70 VFDLFD-TKHNG-ILDFEEFARALSIFH----PNSPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVAT 131 (206)
Q Consensus 70 lf~~~d-~~~~g-~i~f~ef~~~~~~~~----~~~~~~~~~~~~F~~~D~~~~g~It~~Ef~~~l~~~ 131 (206)
+|..+| .+++| .|+..|+..++.... ........+..+++.+|.+++|.|+++||..++..+
T Consensus 15 ~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l 82 (93)
T cd05026 15 IFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAAL 82 (93)
T ss_pred HHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence 567777 67888 599999999996632 112466789999999999999999999999998665
No 57
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=98.27 E-value=5.8e-06 Score=55.44 Aligned_cols=65 Identities=18% Similarity=0.243 Sum_probs=52.1
Q ss_pred HHHHHhHHcC--CCCCcccHHHHHHHHHhhCCC----CChHHHHHHHHhhhCCCCCCcccHHHHHHHHHHH
Q 028605 67 INKVFDLFDT--KHNGILDFEEFARALSIFHPN----SPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVAT 131 (206)
Q Consensus 67 i~~lf~~~d~--~~~g~i~f~ef~~~~~~~~~~----~~~~~~~~~~F~~~D~~~~g~It~~Ef~~~l~~~ 131 (206)
+...|..+|. +++|.|+..++..++...... ....+.+..+++.+|.+++|.|+++||..++..+
T Consensus 10 l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 10 IIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKL 80 (88)
T ss_pred HHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHH
Confidence 4446777778 789999999999998653221 1347789999999999999999999999987554
No 58
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=98.25 E-value=1e-05 Score=76.57 Aligned_cols=74 Identities=18% Similarity=0.324 Sum_probs=36.4
Q ss_pred hhcCCCHHHHHHHHHHHHhhccCCcCccHHHHHHhHHcCCCCCcccHHHHHHHHHhhCCCC------ChHHHHHHHHhhh
Q 028605 38 RETVFSVSEIEALYELFKKISSAVIDDGLINKVFDLFDTKHNGILDFEEFARALSIFHPNS------PIDDKIEFSFQLY 111 (206)
Q Consensus 38 ~~~~~s~~e~~~l~~~F~~~d~~~~~~g~i~~lf~~~d~~~~g~i~f~ef~~~~~~~~~~~------~~~~~~~~~F~~~ 111 (206)
..+..|++.+.++.-.|+.+|.+ .+|.+++.+|..++......- .++..++.+..+.
T Consensus 2243 n~~GVtEe~L~EFs~~fkhFDke-----------------k~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~ld~v 2305 (2399)
T KOG0040|consen 2243 NHNGVTEEQLKEFSMMFKHFDKE-----------------KNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEILDLV 2305 (2399)
T ss_pred ccCCCCHHHHHHHHHHHHHhchh-----------------hccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHHHhc
Confidence 34456666666666666666654 444455555555544333211 1223444444555
Q ss_pred CCCCCCcccHHHHHHHH
Q 028605 112 DLKQQGFIERQEVKQMV 128 (206)
Q Consensus 112 D~~~~g~It~~Ef~~~l 128 (206)
|.+.+|+|+..+....|
T Consensus 2306 DP~r~G~Vsl~dY~afm 2322 (2399)
T KOG0040|consen 2306 DPNRDGYVSLQDYMAFM 2322 (2399)
T ss_pred CCCCcCcccHHHHHHHH
Confidence 55555555555544443
No 59
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=98.23 E-value=8.8e-06 Score=55.35 Aligned_cols=64 Identities=13% Similarity=0.141 Sum_probs=52.0
Q ss_pred HHHHHhHHcC-CC-CCcccHHHHHHHHHhhC----CCCChHHHHHHHHhhhCCCCCCcccHHHHHHHHHH
Q 028605 67 INKVFDLFDT-KH-NGILDFEEFARALSIFH----PNSPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVA 130 (206)
Q Consensus 67 i~~lf~~~d~-~~-~g~i~f~ef~~~~~~~~----~~~~~~~~~~~~F~~~D~~~~g~It~~Ef~~~l~~ 130 (206)
+...|..+|. ++ +|.|+..|+..++.... ....+.+.+..+++.+|.+++|.|+++||..++..
T Consensus 10 l~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~ 79 (94)
T cd05031 10 LILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAG 79 (94)
T ss_pred HHHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 4457888886 87 69999999999986521 22356778999999999999999999999998754
No 60
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=98.22 E-value=1e-05 Score=54.76 Aligned_cols=66 Identities=18% Similarity=0.186 Sum_probs=53.6
Q ss_pred HHHHHHhHHc-CCCCC-cccHHHHHHHHHh-h---CCCCChHHHHHHHHhhhCCCCCCcccHHHHHHHHHHH
Q 028605 66 LINKVFDLFD-TKHNG-ILDFEEFARALSI-F---HPNSPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVAT 131 (206)
Q Consensus 66 ~i~~lf~~~d-~~~~g-~i~f~ef~~~~~~-~---~~~~~~~~~~~~~F~~~D~~~~g~It~~Ef~~~l~~~ 131 (206)
.+...|..+| .+++| .|+..|+..++.. + ....++.+.+..+++.+|.+++|.|+++||..++..+
T Consensus 10 ~l~~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~ 81 (92)
T cd05025 10 TLINVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAAL 81 (92)
T ss_pred HHHHHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHH
Confidence 3555888886 89999 5999999999965 2 1113567789999999999999999999999987654
No 61
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=98.20 E-value=1.1e-05 Score=54.21 Aligned_cols=62 Identities=15% Similarity=0.109 Sum_probs=50.5
Q ss_pred HHhHHcC-CC-CCcccHHHHHHHHHhh--CCCCChHHHHHHHHhhhCCCCCCcccHHHHHHHHHHH
Q 028605 70 VFDLFDT-KH-NGILDFEEFARALSIF--HPNSPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVAT 131 (206)
Q Consensus 70 lf~~~d~-~~-~g~i~f~ef~~~~~~~--~~~~~~~~~~~~~F~~~D~~~~g~It~~Ef~~~l~~~ 131 (206)
+|..++. ++ +|.|+..|+..++... .....+.+.+..+++.+|.+++|.|+++||..++..+
T Consensus 15 ~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l 80 (88)
T cd05029 15 IFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGAL 80 (88)
T ss_pred HHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH
Confidence 5666665 56 7899999999999642 2333677889999999999999999999999987655
No 62
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=98.16 E-value=5.4e-06 Score=64.87 Aligned_cols=118 Identities=14% Similarity=0.188 Sum_probs=83.9
Q ss_pred HHHHHHHHHHhhccCCcCccHHHH------------------------HHhHHcCCCCCcccHHHHHHHHHhhCCCCChH
Q 028605 46 EIEALYELFKKISSAVIDDGLINK------------------------VFDLFDTKHNGILDFEEFARALSIFHPNSPID 101 (206)
Q Consensus 46 e~~~l~~~F~~~d~~~~~~g~i~~------------------------lf~~~d~~~~g~i~f~ef~~~~~~~~~~~~~~ 101 (206)
.-+.+..+|.+.|.+ .++.|+. .|...|+|++|.|+|+||..-+...-.....+
T Consensus 99 srrklmviFsKvDVN--tDrkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEykvkFlaskghseke 176 (362)
T KOG4251|consen 99 SRRKLMVIFSKVDVN--TDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYKVKFLASKGHSEKE 176 (362)
T ss_pred HHHHHHHHHhhcccC--ccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhhhhHHHhhcCcchHH
Confidence 456677889998888 7777765 88899999999999999998876543211100
Q ss_pred -------------HHHHHHHhhhCCCCCCc---------ccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCC
Q 028605 102 -------------DKIEFSFQLYDLKQQGF---------IERQEVKQMVVATLTESGMNLSDDVIESIIDKTFEEADTKH 159 (206)
Q Consensus 102 -------------~~~~~~F~~~D~~~~g~---------It~~Ef~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~d~ 159 (206)
..-...|..-+++..|. +|-+||..++ .+..+...+..+++.+....|+|+
T Consensus 177 vadairlneelkVDeEtqevlenlkdRwyqaDsppadlllteeEflsFL-------HPEhSrgmLrfmVkeivrdlDqdg 249 (362)
T KOG4251|consen 177 VADAIRLNEELKVDEETQEVLENLKDRWYQADSPPADLLLTEEEFLSFL-------HPEHSRGMLRFMVKEIVRDLDQDG 249 (362)
T ss_pred HHHHhhccCcccccHHHHHHHHhhhhhhccccCchhhhhhhHHHHHHHc-------ChHhhhhhHHHHHHHHHHHhccCC
Confidence 01122333334455444 4447777764 566777778888999999999999
Q ss_pred CCcccHHHHHHHH
Q 028605 160 DGKIDKEEWRNLV 172 (206)
Q Consensus 160 ~g~Is~~eF~~~l 172 (206)
|.++|..+|+...
T Consensus 250 DkqlSvpeFislp 262 (362)
T KOG4251|consen 250 DKQLSVPEFISLP 262 (362)
T ss_pred CeeecchhhhcCC
Confidence 9999999997654
No 63
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=98.14 E-value=9.3e-06 Score=57.38 Aligned_cols=58 Identities=24% Similarity=0.306 Sum_probs=49.5
Q ss_pred HHHHHHhHHcCCCCCcccHHHHHHHHHhhCCCCChHHHHHHHHhhhCCCCCCcccHHHHHHHH
Q 028605 66 LINKVFDLFDTKHNGILDFEEFARALSIFHPNSPIDDKIEFSFQLYDLKQQGFIERQEVKQMV 128 (206)
Q Consensus 66 ~i~~lf~~~d~~~~g~i~f~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~It~~Ef~~~l 128 (206)
.+.-.|..+|.|++|.|+..|+..+. + .+.+..+...|..+|.|++|.||.+||...+
T Consensus 49 ~l~w~F~~lD~d~DG~Ls~~EL~~~~--l---~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 49 PVGWMFNQLDGNYDGKLSHHELAPIR--L---DPNEHCIKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred HHHHHHHHHCCCCCCcCCHHHHHHHH--c---cchHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 45568889999999999999998776 1 3556668889999999999999999999986
No 64
>KOG2643 consensus Ca2+ binding protein, contains EF-hand motifs [Inorganic ion transport and metabolism]
Probab=98.14 E-value=1.6e-05 Score=66.93 Aligned_cols=82 Identities=20% Similarity=0.391 Sum_probs=56.6
Q ss_pred cccHHHHHHHHHhhCCCCChHHHHHHHHhhhCCCCCCcccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCC
Q 028605 81 ILDFEEFARALSIFHPNSPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLTESGMNLSDDVIESIIDKTFEEADTKHD 160 (206)
Q Consensus 81 ~i~f~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~It~~Ef~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~d~~ 160 (206)
.|++.||..++..+..- .. +..+...| ....+.|+..+|.++.... .|.++++.. +..+|..||.|+|
T Consensus 372 gISl~Ef~~Ff~Fl~~l-~d---fd~Al~fy-~~Ag~~i~~~~f~raa~~v---tGveLSdhV----vdvvF~IFD~N~D 439 (489)
T KOG2643|consen 372 GISLQEFKAFFRFLNNL-ND---FDIALRFY-HMAGASIDEKTFQRAAKVV---TGVELSDHV----VDVVFTIFDENND 439 (489)
T ss_pred CcCHHHHHHHHHHHhhh-hH---HHHHHHHH-HHcCCCCCHHHHHHHHHHh---cCcccccce----eeeEEEEEccCCC
Confidence 38888888887665432 22 33333333 2345678888888886443 577787653 4455689999999
Q ss_pred CcccHHHHHHHHhh
Q 028605 161 GKIDKEEWRNLVLR 174 (206)
Q Consensus 161 g~Is~~eF~~~l~~ 174 (206)
|.+|++||+.++++
T Consensus 440 g~LS~~EFl~Vmk~ 453 (489)
T KOG2643|consen 440 GTLSHKEFLAVMKR 453 (489)
T ss_pred CcccHHHHHHHHHH
Confidence 99999999998866
No 65
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=98.14 E-value=3.2e-06 Score=44.55 Aligned_cols=27 Identities=37% Similarity=0.704 Sum_probs=24.0
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHHhh
Q 028605 148 IDKTFEEADTKHDGKIDKEEWRNLVLR 174 (206)
Q Consensus 148 ~~~~f~~~d~d~~g~Is~~eF~~~l~~ 174 (206)
++.+|+.+|.|++|.|+++||+.++++
T Consensus 2 ~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 456779999999999999999999875
No 66
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=98.12 E-value=2.4e-05 Score=66.82 Aligned_cols=102 Identities=21% Similarity=0.360 Sum_probs=74.6
Q ss_pred HHhHHcCCCCCcccHHHHHHHHHhhCCCCChHHHHHHHHhhhCCCCCCcccHHHHHHHHHHHHHhcCC------------
Q 028605 70 VFDLFDTKHNGILDFEEFARALSIFHPNSPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLTESGM------------ 137 (206)
Q Consensus 70 lf~~~d~~~~g~i~f~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~It~~Ef~~~l~~~~~~~~~------------ 137 (206)
+....|..+||.|+|+||..+-..+|. ++...+.+|..||+.++|.+|.+++.++..+.--....
T Consensus 79 la~iaD~tKDglisf~eF~afe~~lC~---pDal~~~aFqlFDr~~~~~vs~~~~~~if~~t~l~~~~~f~~d~efI~~~ 155 (694)
T KOG0751|consen 79 LASIADQTKDGLISFQEFRAFESVLCA---PDALFEVAFQLFDRLGNGEVSFEDVADIFGQTNLHHHIPFNWDSEFIKLH 155 (694)
T ss_pred HHhhhhhcccccccHHHHHHHHhhccC---chHHHHHHHHHhcccCCCceehHHHHHHHhccccccCCCccCCcchHHHH
Confidence 555667778999999999999887774 46778899999999999999999999986543211000
Q ss_pred -------CCCHHH--------HHHHHHHHHHHhCCCCCCcccHHHHHHHHhh
Q 028605 138 -------NLSDDV--------IESIIDKTFEEADTKHDGKIDKEEWRNLVLR 174 (206)
Q Consensus 138 -------~~~~~~--------~~~~~~~~f~~~d~d~~g~Is~~eF~~~l~~ 174 (206)
.++.++ ..+...+.|+.-|..++|.||--+|...+.+
T Consensus 156 Fg~~~~r~~ny~~f~Q~lh~~~~E~~~qafr~~d~~~ng~is~Ldfq~imvt 207 (694)
T KOG0751|consen 156 FGDIRKRHLNYAEFTQFLHEFQLEHAEQAFREKDKAKNGFISVLDFQDIMVT 207 (694)
T ss_pred hhhHHHHhccHHHHHHHHHHHHHHHHHHHHHHhcccCCCeeeeechHhhhhh
Confidence 111122 2233456778888888999988888887765
No 67
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=98.07 E-value=1.8e-05 Score=67.18 Aligned_cols=60 Identities=35% Similarity=0.508 Sum_probs=50.7
Q ss_pred hCCCCChHHHHHHHHhhhCCCCCCcccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHh
Q 028605 94 FHPNSPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLTESGMNLSDDVIESIIDKTFEEADTKHDGKIDKEEWRNLVL 173 (206)
Q Consensus 94 ~~~~~~~~~~~~~~F~~~D~~~~g~It~~Ef~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~d~~g~Is~~eF~~~l~ 173 (206)
..........++.+|+.+|.+++|.|+.+||.. ...+|..+|.|++|.|+++||...+.
T Consensus 326 ~~~~~~~~~~l~~aF~~~D~dgdG~Is~~E~~~---------------------~~~~F~~~D~d~DG~Is~eEf~~~~~ 384 (391)
T PRK12309 326 LEGGEAFTHAAQEIFRLYDLDGDGFITREEWLG---------------------SDAVFDALDLNHDGKITPEEMRAGLG 384 (391)
T ss_pred hhccChhhHHHHHHHHHhCCCCCCcCcHHHHHH---------------------HHHHHHHhCCCCCCCCcHHHHHHHHH
Confidence 444457778899999999999999999999942 24567999999999999999999886
Q ss_pred h
Q 028605 174 R 174 (206)
Q Consensus 174 ~ 174 (206)
.
T Consensus 385 ~ 385 (391)
T PRK12309 385 A 385 (391)
T ss_pred H
Confidence 4
No 68
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=98.04 E-value=1.9e-05 Score=59.96 Aligned_cols=67 Identities=25% Similarity=0.377 Sum_probs=54.0
Q ss_pred hHHHHHHHHhhhCCCCCCcccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhh
Q 028605 100 IDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLTESGMNLSDDVIESIIDKTFEEADTKHDGKIDKEEWRNLVLR 174 (206)
Q Consensus 100 ~~~~~~~~F~~~D~~~~g~It~~Ef~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~d~~g~Is~~eF~~~l~~ 174 (206)
....+..+|+.||.+.||+|+..|++.++.++ |.+-+---+ +.+....|.|.+|.||+-+|.-++++
T Consensus 97 qIk~~~~~Fk~yDe~rDgfIdl~ELK~mmEKL----gapQTHL~l----K~mikeVded~dgklSfreflLIfrk 163 (244)
T KOG0041|consen 97 QIKDAESMFKQYDEDRDGFIDLMELKRMMEKL----GAPQTHLGL----KNMIKEVDEDFDGKLSFREFLLIFRK 163 (244)
T ss_pred HHHHHHHHHHHhcccccccccHHHHHHHHHHh----CCchhhHHH----HHHHHHhhcccccchhHHHHHHHHHH
Confidence 44557889999999999999999999998775 555444333 44448899999999999999888766
No 69
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=98.02 E-value=4.5e-05 Score=51.36 Aligned_cols=62 Identities=18% Similarity=0.192 Sum_probs=48.6
Q ss_pred HHhH-HcCCCCC-cccHHHHHHHHHhhCC----CCChHHHHHHHHhhhCCCCCCcccHHHHHHHHHHH
Q 028605 70 VFDL-FDTKHNG-ILDFEEFARALSIFHP----NSPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVAT 131 (206)
Q Consensus 70 lf~~-~d~~~~g-~i~f~ef~~~~~~~~~----~~~~~~~~~~~F~~~D~~~~g~It~~Ef~~~l~~~ 131 (206)
+|.. ++.+++| .|+..||..++....+ .......+..+++.+|.|++|.|+++||..++..+
T Consensus 14 ~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l 81 (89)
T cd05023 14 VFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGL 81 (89)
T ss_pred HHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 4444 4456655 8999999999987642 22445779999999999999999999999987654
No 70
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=98.01 E-value=6.4e-05 Score=50.50 Aligned_cols=62 Identities=24% Similarity=0.322 Sum_probs=47.8
Q ss_pred HHhHHcCC--CCCcccHHHHHHHHHhhCCCCCh----HHHHHHHHhhhCCCCCCcccHHHHHHHHHHH
Q 028605 70 VFDLFDTK--HNGILDFEEFARALSIFHPNSPI----DDKIEFSFQLYDLKQQGFIERQEVKQMVVAT 131 (206)
Q Consensus 70 lf~~~d~~--~~g~i~f~ef~~~~~~~~~~~~~----~~~~~~~F~~~D~~~~g~It~~Ef~~~l~~~ 131 (206)
+|..++.+ .+|.|+.+|+..++........+ .+.+..+|+.+|.+++|.|+++||..++..+
T Consensus 13 ~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 13 VFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKV 80 (88)
T ss_pred HHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 44444433 47899999999999744332233 7889999999999999999999999987654
No 71
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=97.98 E-value=8.9e-06 Score=43.50 Aligned_cols=27 Identities=22% Similarity=0.636 Sum_probs=23.6
Q ss_pred HHHHHHhhhCCCCCCcccHHHHHHHHH
Q 028605 103 KIEFSFQLYDLKQQGFIERQEVKQMVV 129 (206)
Q Consensus 103 ~~~~~F~~~D~~~~g~It~~Ef~~~l~ 129 (206)
+++.+|+.+|.+++|.|+.+||..++.
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILR 27 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 478899999999999999999999976
No 72
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=97.92 E-value=2.6e-05 Score=52.41 Aligned_cols=68 Identities=16% Similarity=0.387 Sum_probs=49.2
Q ss_pred HHHHHHhhhCCCCCCcccHHHHHHHHHHHHHh-cCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhhC
Q 028605 103 KIEFSFQLYDLKQQGFIERQEVKQMVVATLTE-SGMNLSDDVIESIIDKTFEEADTKHDGKIDKEEWRNLVLRH 175 (206)
Q Consensus 103 ~~~~~F~~~D~~~~g~It~~Ef~~~l~~~~~~-~~~~~~~~~~~~~~~~~f~~~d~d~~g~Is~~eF~~~l~~~ 175 (206)
.+..+|..|. .+.+.+++.||+.++..=+.. ++..-+++. +..+|+..|.|+||.|+|.||...+...
T Consensus 9 ~lI~~FhkYa-G~~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~----vd~im~~LD~n~Dg~vdF~EF~~Lv~~l 77 (91)
T cd05024 9 KMMLTFHKFA-GEKNYLNRDDLQKLMEKEFSEFLKNQNDPMA----VDKIMKDLDDCRDGKVGFQSFFSLIAGL 77 (91)
T ss_pred HHHHHHHHHc-CCCCcCCHHHHHHHHHHHhHHHHcCCCCHHH----HHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 3667888887 345699999999998532221 223334443 5556689999999999999999988764
No 73
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.90 E-value=4.7e-05 Score=52.80 Aligned_cols=66 Identities=24% Similarity=0.378 Sum_probs=55.9
Q ss_pred HHHhhhCCCCCCcccHHHHHHHHHHHHH--h----cCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHH
Q 028605 106 FSFQLYDLKQQGFIERQEVKQMVVATLT--E----SGMNLSDDVIESIIDKTFEEADTKHDGKIDKEEWRNL 171 (206)
Q Consensus 106 ~~F~~~D~~~~g~It~~Ef~~~l~~~~~--~----~~~~~~~~~~~~~~~~~f~~~d~d~~g~Is~~eF~~~ 171 (206)
.-|++.|-|++|.|+--|+..++...-. . +.+-.++.+++.++..+++.-|.|+||.|+|.||...
T Consensus 71 HYF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 71 HYFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLKR 142 (144)
T ss_pred hhhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHhh
Confidence 4689999999999999999999876544 2 2345688899999999999999999999999999764
No 74
>PF14658 EF-hand_9: EF-hand domain
Probab=97.90 E-value=6.8e-05 Score=47.13 Aligned_cols=60 Identities=18% Similarity=0.300 Sum_probs=55.7
Q ss_pred HHhHHcCCCCCcccHHHHHHHHHhhCCCCChHHHHHHHHhhhCCCCC-CcccHHHHHHHHH
Q 028605 70 VFDLFDTKHNGILDFEEFARALSIFHPNSPIDDKIEFSFQLYDLKQQ-GFIERQEVKQMVV 129 (206)
Q Consensus 70 lf~~~d~~~~g~i~f~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~-g~It~~Ef~~~l~ 129 (206)
.|..||.++.|.|.-.+++.++..+..+.+.+.+++.+.+.+|.+|. |.|+++.|..+++
T Consensus 3 ~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~ 63 (66)
T PF14658_consen 3 AFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMR 63 (66)
T ss_pred chhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHH
Confidence 58899999999999999999999888767999999999999999998 9999999999874
No 75
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=97.82 E-value=2.6e-05 Score=39.52 Aligned_cols=24 Identities=25% Similarity=0.461 Sum_probs=19.5
Q ss_pred HHHHHhhhCCCCCCcccHHHHHHH
Q 028605 104 IEFSFQLYDLKQQGFIERQEVKQM 127 (206)
Q Consensus 104 ~~~~F~~~D~~~~g~It~~Ef~~~ 127 (206)
++.+|+.+|.|++|.|+.+||.++
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~ 24 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRL 24 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHH
Confidence 356788888888888888888875
No 76
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=97.79 E-value=0.00013 Score=61.99 Aligned_cols=55 Identities=25% Similarity=0.433 Sum_probs=46.8
Q ss_pred cHHHHHHhHHcCCCCCcccHHHHHHHHHhhCCCCChHHHHHHHHhhhCCCCCCcccHHHHHHHHHHHHH
Q 028605 65 GLINKVFDLFDTKHNGILDFEEFARALSIFHPNSPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLT 133 (206)
Q Consensus 65 g~i~~lf~~~d~~~~g~i~f~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~It~~Ef~~~l~~~~~ 133 (206)
.++..+|..+|.+++|.|+++||.. ...+|..+|.|++|.|+++||..++...++
T Consensus 334 ~~l~~aF~~~D~dgdG~Is~~E~~~--------------~~~~F~~~D~d~DG~Is~eEf~~~~~~~~~ 388 (391)
T PRK12309 334 HAAQEIFRLYDLDGDGFITREEWLG--------------SDAVFDALDLNHDGKITPEEMRAGLGAALR 388 (391)
T ss_pred HHHHHHHHHhCCCCCCcCcHHHHHH--------------HHHHHHHhCCCCCCCCcHHHHHHHHHHHHH
Confidence 3455599999999999999999942 467899999999999999999999766543
No 77
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=97.71 E-value=0.00045 Score=47.84 Aligned_cols=88 Identities=25% Similarity=0.322 Sum_probs=60.8
Q ss_pred ChHHHHHHHHhhhCCCCCCcccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhhChhH
Q 028605 99 PIDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLTESGMNLSDDVIESIIDKTFEEADTKHDGKIDKEEWRNLVLRHPSL 178 (206)
Q Consensus 99 ~~~~~~~~~F~~~D~~~~g~It~~Ef~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~d~~g~Is~~eF~~~l~~~~~~ 178 (206)
....++..+|...|. ++|.|+.++.+.++.. ..++.+.+..++ ...|.|++|.++.+||+-+++-....
T Consensus 7 ~e~~~y~~~F~~l~~-~~g~isg~~a~~~f~~------S~L~~~~L~~IW----~LaD~~~dG~L~~~EF~iAm~Li~~~ 75 (104)
T PF12763_consen 7 EEKQKYDQIFQSLDP-QDGKISGDQAREFFMK------SGLPRDVLAQIW----NLADIDNDGKLDFEEFAIAMHLINRK 75 (104)
T ss_dssp CHHHHHHHHHHCTSS-STTEEEHHHHHHHHHH------TTSSHHHHHHHH----HHH-SSSSSEEEHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCC-CCCeEeHHHHHHHHHH------cCCCHHHHHHHH----hhhcCCCCCcCCHHHHHHHHHHHHHH
Confidence 456678889999985 6899999999998643 267766655555 89999999999999999988753322
Q ss_pred HhhhhhhhhhhhhhccCcceecc
Q 028605 179 LKNMTLQYLKDITTTFPSFVFHS 201 (206)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~ 201 (206)
.. -...++=.+.|+.++.+
T Consensus 76 ~~----~~~~~lP~~LP~~L~p~ 94 (104)
T PF12763_consen 76 LN----GNGKPLPSSLPPSLIPP 94 (104)
T ss_dssp HH----HTTS---SSSSGGGSSS
T ss_pred hc----CCCCCCchhcCHHHCCC
Confidence 21 12235556677777665
No 78
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=97.63 E-value=8.1e-05 Score=37.70 Aligned_cols=24 Identities=46% Similarity=0.718 Sum_probs=21.0
Q ss_pred HHHHHHhCCCCCCcccHHHHHHHH
Q 028605 149 DKTFEEADTKHDGKIDKEEWRNLV 172 (206)
Q Consensus 149 ~~~f~~~d~d~~g~Is~~eF~~~l 172 (206)
+.+|..+|.|++|.|+++||.+++
T Consensus 2 ~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 2 KDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred HHHHHHHcCCCCCcCCHHHHHHHC
Confidence 457799999999999999998854
No 79
>KOG0377 consensus Protein serine/threonine phosphatase RDGC/PPEF, contains STphosphatase and EF-hand domains [Signal transduction mechanisms]
Probab=97.60 E-value=0.0002 Score=60.65 Aligned_cols=59 Identities=24% Similarity=0.432 Sum_probs=51.6
Q ss_pred HHhHHcCCCCCcccHHHHHHHHHhhCCC---CChHHHHHHHHhhhCCCCCCcccHHHHHHHH
Q 028605 70 VFDLFDTKHNGILDFEEFARALSIFHPN---SPIDDKIEFSFQLYDLKQQGFIERQEVKQMV 128 (206)
Q Consensus 70 lf~~~d~~~~g~i~f~ef~~~~~~~~~~---~~~~~~~~~~F~~~D~~~~g~It~~Ef~~~l 128 (206)
+|+.+|.|.+|.|+.+||..++..+... .-....+..+-+..|-|+||.|+..||..+.
T Consensus 552 iF~~iD~D~SG~isldEF~~a~~l~~sh~~~~i~~~~i~~la~~mD~NkDG~IDlNEfLeAF 613 (631)
T KOG0377|consen 552 IFNIIDADNSGEISLDEFRTAWKLLSSHMNGAISDDEILELARSMDLNKDGKIDLNEFLEAF 613 (631)
T ss_pred HHHHhccCCCCceeHHHHHHHHHHHHhhcCCCcCHHHHHHHHHhhccCCCCcccHHHHHHHH
Confidence 9999999999999999999998776542 2456778889999999999999999999874
No 80
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=97.51 E-value=0.00055 Score=40.66 Aligned_cols=50 Identities=22% Similarity=0.276 Sum_probs=39.0
Q ss_pred cccHHHHHHHHHhhCCCCChHHHHHHHHhhhCCCCCCcccHHHHHHHHHHH
Q 028605 81 ILDFEEFARALSIFHPNSPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVAT 131 (206)
Q Consensus 81 ~i~f~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~It~~Ef~~~l~~~ 131 (206)
+++|.|...++..+.- ...+..+..+|+..|++++|.+..+||..+++.+
T Consensus 1 kmsf~Evk~lLk~~NI-~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 1 KMSFKEVKKLLKMMNI-EMDDEYARQLFQECDKSQSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp EBEHHHHHHHHHHTT-----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHcc-CcCHHHHHHHHHHhcccCCCCccHHHHHHHHHHh
Confidence 4789999999877665 3778889999999999999999999999987543
No 81
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=97.45 E-value=4.4e-05 Score=53.73 Aligned_cols=62 Identities=26% Similarity=0.434 Sum_probs=43.3
Q ss_pred ChHHHHHHHHhhhCCCCCCcccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHH
Q 028605 99 PIDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLTESGMNLSDDVIESIIDKTFEEADTKHDGKIDKEEWRN 170 (206)
Q Consensus 99 ~~~~~~~~~F~~~D~~~~g~It~~Ef~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~d~~g~Is~~eF~~ 170 (206)
.....+.+.|..+|.|+||.|+..|+..+...+ .. .+..+..+|..+|.|+||.||..||..
T Consensus 51 ~~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l------~~----~e~C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 51 ECKRVVHWKFCQLDRNKDGVLDRSELKPLRRPL------MP----PEHCARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp GGHHHHHHHHHHH--T-SSEE-TTTTGGGGSTT------ST----TGGGHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred hhhhhhhhhHhhhcCCCCCccCHHHHHHHHHHH------hh----hHHHHHHHHHHcCCCCCCCCCHHHHcc
Confidence 456678999999999999999999999863211 11 234466777999999999999999975
No 82
>KOG0041 consensus Predicted Ca2+-binding protein, EF-Hand protein superfamily [General function prediction only]
Probab=97.43 E-value=0.0017 Score=49.59 Aligned_cols=100 Identities=14% Similarity=0.215 Sum_probs=69.3
Q ss_pred HHHHHHhHHcCCCCCcccHHHHHHHHHhhCCCCChHHHHHHHHhhhCCCCCCcccHHHHHHHHHHHHHhcCCCCCHHHHH
Q 028605 66 LINKVFDLFDTKHNGILDFEEFARALSIFHPNSPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLTESGMNLSDDVIE 145 (206)
Q Consensus 66 ~i~~lf~~~d~~~~g~i~f~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~It~~Ef~~~l~~~~~~~~~~~~~~~~~ 145 (206)
....+|..+|.+.||.|++.|...++-.+... .+.--++.+.+..|.|.+|.|++.||.-+...... |.--.+....
T Consensus 100 ~~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgap-QTHL~lK~mikeVded~dgklSfreflLIfrkaaa--gEL~~ds~~~ 176 (244)
T KOG0041|consen 100 DAESMFKQYDEDRDGFIDLMELKRMMEKLGAP-QTHLGLKNMIKEVDEDFDGKLSFREFLLIFRKAAA--GELQEDSGLL 176 (244)
T ss_pred HHHHHHHHhcccccccccHHHHHHHHHHhCCc-hhhHHHHHHHHHhhcccccchhHHHHHHHHHHHhc--cccccchHHH
Confidence 33448888899999999999999999887752 55566888999999999999999999988654422 2222222333
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHH
Q 028605 146 SIIDKTFEEADTKHDGKIDKEEWRN 170 (206)
Q Consensus 146 ~~~~~~f~~~d~d~~g~Is~~eF~~ 170 (206)
.+++ ....|....|.---..|-.
T Consensus 177 ~LAr--~~eVDVskeGV~GAknFFe 199 (244)
T KOG0041|consen 177 RLAR--LSEVDVSKEGVSGAKNFFE 199 (244)
T ss_pred HHHH--hcccchhhhhhhhHHHHHH
Confidence 3331 1346776677655555543
No 83
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=97.29 E-value=0.00035 Score=37.16 Aligned_cols=27 Identities=33% Similarity=0.513 Sum_probs=23.1
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHHhh
Q 028605 148 IDKTFEEADTKHDGKIDKEEWRNLVLR 174 (206)
Q Consensus 148 ~~~~f~~~d~d~~g~Is~~eF~~~l~~ 174 (206)
+..+|..+|.|++|.|+.+||..++++
T Consensus 2 l~~~F~~~D~d~dG~I~~~el~~~l~~ 28 (31)
T PF13405_consen 2 LREAFKMFDKDGDGFIDFEELRAILRK 28 (31)
T ss_dssp HHHHHHHH-TTSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCcHHHHHHHHHH
Confidence 356789999999999999999999984
No 84
>KOG0040 consensus Ca2+-binding actin-bundling protein (spectrin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=97.14 E-value=0.0021 Score=61.64 Aligned_cols=66 Identities=15% Similarity=0.327 Sum_probs=50.9
Q ss_pred HHHHHHhhhCCCCCCcccHHHHHHHHHHHHHh---cCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHH
Q 028605 103 KIEFSFQLYDLKQQGFIERQEVKQMVVATLTE---SGMNLSDDVIESIIDKTFEEADTKHDGKIDKEEWRNLV 172 (206)
Q Consensus 103 ~~~~~F~~~D~~~~g~It~~Ef~~~l~~~~~~---~~~~~~~~~~~~~~~~~f~~~d~d~~g~Is~~eF~~~l 172 (206)
++..+|+.||++.+|.++..+|+..|+++-=. ...+-+++++++++ ...|++.+|+|+..+|..+|
T Consensus 2254 EFs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe~~l----d~vDP~r~G~Vsl~dY~afm 2322 (2399)
T KOG0040|consen 2254 EFSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFEEIL----DLVDPNRDGYVSLQDYMAFM 2322 (2399)
T ss_pred HHHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHHHHH----HhcCCCCcCcccHHHHHHHH
Confidence 46679999999999999999999998864111 11223345788877 68999999999999998876
No 85
>KOG0751 consensus Mitochondrial aspartate/glutamate carrier protein Aralar/Citrin (contains EF-hand Ca2+-binding domains) [Energy production and conversion]
Probab=97.06 E-value=0.0084 Score=51.77 Aligned_cols=92 Identities=16% Similarity=0.249 Sum_probs=68.5
Q ss_pred HHcCCCCCcccHHHHHHHHHhhCCCC-ChHHHHHHHHhhhCCCCCCcccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Q 028605 73 LFDTKHNGILDFEEFARALSIFHPNS-PIDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLTESGMNLSDDVIESIIDKT 151 (206)
Q Consensus 73 ~~d~~~~g~i~f~ef~~~~~~~~~~~-~~~~~~~~~F~~~D~~~~g~It~~Ef~~~l~~~~~~~~~~~~~~~~~~~~~~~ 151 (206)
..+.++...++-++|+.....+.... .+.+..+..-..-|.-+||.|+++||..+ +.++. .+ +.+...+
T Consensus 44 s~e~~ge~~mt~edFv~~ylgL~~e~~~n~~~v~Lla~iaD~tKDglisf~eF~af-e~~lC---~p------Dal~~~a 113 (694)
T KOG0751|consen 44 SIEKNGESYMTPEDFVRRYLGLYNESNFNDKIVRLLASIADQTKDGLISFQEFRAF-ESVLC---AP------DALFEVA 113 (694)
T ss_pred HHhhccccccCHHHHHHHHHhhcccccCChHHHHHHHhhhhhcccccccHHHHHHH-Hhhcc---Cc------hHHHHHH
Confidence 44566777899999999887766533 34455566666679999999999999985 22211 11 3456778
Q ss_pred HHHhCCCCCCcccHHHHHHHHhh
Q 028605 152 FEEADTKHDGKIDKEEWRNLVLR 174 (206)
Q Consensus 152 f~~~d~d~~g~Is~~eF~~~l~~ 174 (206)
|..||+.++|.+|++++..++.+
T Consensus 114 FqlFDr~~~~~vs~~~~~~if~~ 136 (694)
T KOG0751|consen 114 FQLFDRLGNGEVSFEDVADIFGQ 136 (694)
T ss_pred HHHhcccCCCceehHHHHHHHhc
Confidence 89999999999999999998865
No 86
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=97.01 E-value=0.0055 Score=41.20 Aligned_cols=53 Identities=9% Similarity=0.073 Sum_probs=42.8
Q ss_pred CCcccHHHHHHHHHhhC----CCCChHHHHHHHHhhhCCCCCCcccHHHHHHHHHHH
Q 028605 79 NGILDFEEFARALSIFH----PNSPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVAT 131 (206)
Q Consensus 79 ~g~i~f~ef~~~~~~~~----~~~~~~~~~~~~F~~~D~~~~g~It~~Ef~~~l~~~ 131 (206)
.+.++..||..++..-. ........+..+++..|.|+||.|++.||..++..+
T Consensus 21 ~~tLsk~Elk~Ll~~Elp~~l~~~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv~~l 77 (91)
T cd05024 21 KNYLNRDDLQKLMEKEFSEFLKNQNDPMAVDKIMKDLDDCRDGKVGFQSFFSLIAGL 77 (91)
T ss_pred CCcCCHHHHHHHHHHHhHHHHcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 35799999999985533 333456678999999999999999999999987655
No 87
>KOG4251 consensus Calcium binding protein [General function prediction only]
Probab=96.98 E-value=0.0014 Score=51.59 Aligned_cols=91 Identities=22% Similarity=0.246 Sum_probs=66.6
Q ss_pred ccHHHHHHHHHhhCCCCChHHHHHHHHhhhCCCCCCcccHHHHHHHHHHHHHh-cCCCCCHHHHHHHHHHHHHHhCCCCC
Q 028605 82 LDFEEFARALSIFHPNSPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLTE-SGMNLSDDVIESIIDKTFEEADTKHD 160 (206)
Q Consensus 82 i~f~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~It~~Ef~~~l~~~~~~-~~~~~~~~~~~~~~~~~f~~~d~d~~ 160 (206)
++-+||..++.--...+.-..-+..+.+.+|.+|+..++..||.......... -|..+.+-.++.-.+.+-+.+|.|.|
T Consensus 216 lteeEflsFLHPEhSrgmLrfmVkeivrdlDqdgDkqlSvpeFislpvGTVenqqgqdiddnwvkdRkkEFeElIDsNhD 295 (362)
T KOG4251|consen 216 LTEEEFLSFLHPEHSRGMLRFMVKEIVRDLDQDGDKQLSVPEFISLPVGTVENQQGQDIDDNWVKDRKKEFEELIDSNHD 295 (362)
T ss_pred hhHHHHHHHcChHhhhhhHHHHHHHHHHHhccCCCeeecchhhhcCCCcchhhhhccchHHHHHHHHHHHHHHHhhcCCc
Confidence 44488888886544434555667888999999999999999999864322221 24556666666666666678999999
Q ss_pred CcccHHHHHHHH
Q 028605 161 GKIDKEEWRNLV 172 (206)
Q Consensus 161 g~Is~~eF~~~l 172 (206)
|.+|++|+...+
T Consensus 296 GivTaeELe~y~ 307 (362)
T KOG4251|consen 296 GIVTAEELEDYV 307 (362)
T ss_pred cceeHHHHHhhc
Confidence 999999887764
No 88
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=96.76 E-value=0.0096 Score=39.95 Aligned_cols=79 Identities=18% Similarity=0.344 Sum_probs=51.3
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHHHHHHh---cCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhhChh
Q 028605 101 DDKIEFSFQLYDLKQQGFIERQEVKQMVVATLTE---SGMNLSDDVIESIIDKTFEEADTKHDGKIDKEEWRNLVLRHPS 177 (206)
Q Consensus 101 ~~~~~~~F~~~D~~~~g~It~~Ef~~~l~~~~~~---~~~~~~~~~~~~~~~~~f~~~d~d~~g~Is~~eF~~~l~~~~~ 177 (206)
.++++.+|+.+ .|++|.++...|..++..+++- .|+..+-.-++..++..|.... ....|+.++|..|+...|-
T Consensus 2 ~dKyRylFsli-sd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~~--~~~~I~~~~Fl~wl~~ePq 78 (90)
T PF09069_consen 2 EDKYRYLFSLI-SDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQVQ--LSPKITENQFLDWLMSEPQ 78 (90)
T ss_dssp HHHHHHHHHHH-S-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHTT--T-S-B-HHHHHHHHHT--T
T ss_pred hHHHHHHHHHH-cCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhcccC--CCCccCHHHHHHHHHhCCC
Confidence 46789999999 8889999999999998766652 3433333336777777777652 3457999999999999987
Q ss_pred HHhhh
Q 028605 178 LLKNM 182 (206)
Q Consensus 178 ~~~~~ 182 (206)
.+-|+
T Consensus 79 ~lVWL 83 (90)
T PF09069_consen 79 SLVWL 83 (90)
T ss_dssp TTTHH
T ss_pred eeeHH
Confidence 66555
No 89
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=96.75 E-value=0.0062 Score=36.17 Aligned_cols=48 Identities=23% Similarity=0.520 Sum_probs=34.1
Q ss_pred ccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhh
Q 028605 119 IERQEVKQMVVATLTESGMNLSDDVIESIIDKTFEEADTKHDGKIDKEEWRNLVLR 174 (206)
Q Consensus 119 It~~Ef~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~d~~g~Is~~eF~~~l~~ 174 (206)
+++.|++.+++. ....+++.. +..+|+.+|.+++|.+..+||..+++.
T Consensus 2 msf~Evk~lLk~----~NI~~~~~y----A~~LFq~~D~s~~g~Le~~Ef~~Fy~~ 49 (51)
T PF14788_consen 2 MSFKEVKKLLKM----MNIEMDDEY----ARQLFQECDKSQSGRLEGEEFEEFYKR 49 (51)
T ss_dssp BEHHHHHHHHHH----TT----HHH----HHHHHHHH-SSSSSEBEHHHHHHHHHH
T ss_pred CCHHHHHHHHHH----HccCcCHHH----HHHHHHHhcccCCCCccHHHHHHHHHH
Confidence 678888888544 466676654 556679999999999999999988764
No 90
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=96.69 E-value=0.0011 Score=45.90 Aligned_cols=58 Identities=14% Similarity=0.204 Sum_probs=44.1
Q ss_pred HHhHHcCCCCCcccHHHHHHHHHhhCCCCChHHHHHHHHhhhCCCCCCcccHHHHHHHHHHH
Q 028605 70 VFDLFDTKHNGILDFEEFARALSIFHPNSPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVAT 131 (206)
Q Consensus 70 lf~~~d~~~~g~i~f~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~It~~Ef~~~l~~~ 131 (206)
+|...++ ++|.|+-.+-..++..- +...+.+..++.+.|.+++|.++.+||.-++.-+
T Consensus 15 ~F~~l~~-~~g~isg~~a~~~f~~S---~L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~Li 72 (104)
T PF12763_consen 15 IFQSLDP-QDGKISGDQAREFFMKS---GLPRDVLAQIWNLADIDNDGKLDFEEFAIAMHLI 72 (104)
T ss_dssp HHHCTSS-STTEEEHHHHHHHHHHT---TSSHHHHHHHHHHH-SSSSSEEEHHHHHHHHHHH
T ss_pred HHHhcCC-CCCeEeHHHHHHHHHHc---CCCHHHHHHHHhhhcCCCCCcCCHHHHHHHHHHH
Confidence 4554443 46889999988766433 3566889999999999999999999999987644
No 91
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=96.44 E-value=0.0061 Score=30.43 Aligned_cols=26 Identities=38% Similarity=0.606 Sum_probs=22.6
Q ss_pred HHHHHHhCCCCCCcccHHHHHHHHhh
Q 028605 149 DKTFEEADTKHDGKIDKEEWRNLVLR 174 (206)
Q Consensus 149 ~~~f~~~d~d~~g~Is~~eF~~~l~~ 174 (206)
..+|..+|.+++|.|++.+|..++..
T Consensus 3 ~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 3 KEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 45678999999999999999998864
No 92
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=96.41 E-value=0.0036 Score=31.32 Aligned_cols=26 Identities=27% Similarity=0.526 Sum_probs=20.1
Q ss_pred HHHHHhhhCCCCCCcccHHHHHHHHH
Q 028605 104 IEFSFQLYDLKQQGFIERQEVKQMVV 129 (206)
Q Consensus 104 ~~~~F~~~D~~~~g~It~~Ef~~~l~ 129 (206)
++.+|+.+|.+++|.|+..||..++.
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~ 27 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLK 27 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHH
Confidence 45678888888888888888887753
No 93
>KOG0038 consensus Ca2+-binding kinase interacting protein (KIP) (EF-Hand protein superfamily) [General function prediction only]
Probab=96.30 E-value=0.022 Score=41.48 Aligned_cols=59 Identities=15% Similarity=0.411 Sum_probs=49.6
Q ss_pred HHhHHcCCCCCcccHHHHHHHHHhhCCCCChHHHHHH----HHhhhCCCCCCcccHHHHHHHH
Q 028605 70 VFDLFDTKHNGILDFEEFARALSIFHPNSPIDDKIEF----SFQLYDLKQQGFIERQEVKQMV 128 (206)
Q Consensus 70 lf~~~d~~~~g~i~f~ef~~~~~~~~~~~~~~~~~~~----~F~~~D~~~~g~It~~Ef~~~l 128 (206)
.|..+|-|+++.|.-.+.-..++.+.+.+.+.+++.. +..-.|.||+|.++..||.+++
T Consensus 113 AFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ekvieEAD~DgDgkl~~~eFe~~i 175 (189)
T KOG0038|consen 113 AFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELICEKVIEEADLDGDGKLSFAEFEHVI 175 (189)
T ss_pred eeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHH
Confidence 6778889999999999999999888776677766655 4555699999999999999986
No 94
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=96.12 E-value=0.023 Score=49.41 Aligned_cols=67 Identities=19% Similarity=0.374 Sum_probs=50.0
Q ss_pred HHHHHHhhhCCCCCCcccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhhC
Q 028605 103 KIEFSFQLYDLKQQGFIERQEVKQMVVATLTESGMNLSDDVIESIIDKTFEEADTKHDGKIDKEEWRNLVLRH 175 (206)
Q Consensus 103 ~~~~~F~~~D~~~~g~It~~Ef~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~d~~g~Is~~eF~~~l~~~ 175 (206)
.++..|...| +++|+|+..|+..++... +... .-.+++.++.++...+.|.+|+|++++|+.++...
T Consensus 20 ~l~~kF~~~d-~~~G~v~~~~l~~~f~k~----~~~~-g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~~l 86 (627)
T KOG0046|consen 20 ELKEKFNKLD-DQKGYVTVYELPDAFKKA----KLPL-GYFVREEIKEILGEVGVDADGRVEFEEFVGIFLNL 86 (627)
T ss_pred HHHHHHHhhc-CCCCeeehHHhHHHHHHh----cccc-cchhHHHHHHHHhccCCCcCCccCHHHHHHHHHhh
Confidence 3677899999 999999999999997654 2222 12233344555589999999999999999977653
No 95
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=96.11 E-value=0.011 Score=48.92 Aligned_cols=65 Identities=22% Similarity=0.417 Sum_probs=52.5
Q ss_pred ChHHHHHHHHhhhCCCCCCcccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhhC
Q 028605 99 PIDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLTESGMNLSDDVIESIIDKTFEEADTKHDGKIDKEEWRNLVLRH 175 (206)
Q Consensus 99 ~~~~~~~~~F~~~D~~~~g~It~~Ef~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~d~~g~Is~~eF~~~l~~~ 175 (206)
.....+-++|..+|.|.+|.++..|+..+-. .-. +..++.+|..+|...||.||-.||+..+.+.
T Consensus 247 ~CKds~gWMFnklD~N~Dl~Ld~sEl~~I~l--------dkn----E~CikpFfnsCD~~kDg~iS~~EWC~CF~k~ 311 (434)
T KOG3555|consen 247 ICKDSLGWMFNKLDTNYDLLLDQSELRAIEL--------DKN----EACIKPFFNSCDTYKDGSISTNEWCYCFQKS 311 (434)
T ss_pred chhhhhhhhhhccccccccccCHHHhhhhhc--------cCc----hhHHHHHHhhhcccccCccccchhhhhhccC
Confidence 4455689999999999999999999998731 122 2346667799999999999999999988663
No 96
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=95.94 E-value=0.01 Score=41.72 Aligned_cols=60 Identities=20% Similarity=0.257 Sum_probs=41.3
Q ss_pred ccHHHHHHhHHcCCCCCcccHHHHHHHHHhhCCCCChHHHHHHHHhhhCCCCCCcccHHHHHH
Q 028605 64 DGLINKVFDLFDTKHNGILDFEEFARALSIFHPNSPIDDKIEFSFQLYDLKQQGFIERQEVKQ 126 (206)
Q Consensus 64 ~g~i~~lf~~~d~~~~g~i~f~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~It~~Ef~~ 126 (206)
...+.-.|..+|.|+||.++-.|+..+...+. +.+.=++..|+..|.|+||.||..|...
T Consensus 53 ~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l~---~~e~C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 53 KRVVHWKFCQLDRNKDGVLDRSELKPLRRPLM---PPEHCARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp HHHHHHHHHHH--T-SSEE-TTTTGGGGSTTS---TTGGGHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred hhhhhhhHhhhcCCCCCccCHHHHHHHHHHHh---hhHHHHHHHHHHcCCCCCCCCCHHHHcc
Confidence 34455589999999999999999888876443 3333367788999999999999999753
No 97
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=95.80 E-value=0.06 Score=35.33 Aligned_cols=67 Identities=19% Similarity=0.444 Sum_probs=47.5
Q ss_pred HHHHHhhhCCCCCCcccHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhh
Q 028605 104 IEFSFQLYDLKQQGFIERQEVKQMVVATLTESGM-NLSDDVIESIIDKTFEEADTKHDGKIDKEEWRNLVLR 174 (206)
Q Consensus 104 ~~~~F~~~D~~~~g~It~~Ef~~~l~~~~~~~~~-~~~~~~~~~~~~~~f~~~d~d~~g~Is~~eF~~~l~~ 174 (206)
+..+|+.+-. +.+.+|.++|...|.. +-+. ..+.+++..++.+.-........+.+|+++|..+|..
T Consensus 2 i~~if~~ys~-~~~~mt~~~f~~FL~~---eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S 69 (83)
T PF09279_consen 2 IEEIFRKYSS-DKEYMTAEEFRRFLRE---EQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFS 69 (83)
T ss_dssp HHHHHHHHCT-TSSSEEHHHHHHHHHH---TSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHS
T ss_pred HHHHHHHHhC-CCCcCCHHHHHHHHHH---HhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCC
Confidence 6788999955 7899999999999643 2233 4678888877754322222224689999999999965
No 98
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=95.78 E-value=0.016 Score=51.51 Aligned_cols=92 Identities=25% Similarity=0.467 Sum_probs=72.8
Q ss_pred CcHHHHHhhcCCCHHHHHHHHHHHHhhcc-CCc---------------------------------CccHHHHHHhHHcC
Q 028605 31 EDPEALARETVFSVSEIEALYELFKKISS-AVI---------------------------------DDGLINKVFDLFDT 76 (206)
Q Consensus 31 ~~~~~l~~~~~~s~~e~~~l~~~F~~~d~-~~~---------------------------------~~g~i~~lf~~~d~ 76 (206)
..++.+.+...+|..++..++.+|+.--. +.. ..-.+.++|...|.
T Consensus 487 t~lrs~~~~~~lt~~dL~~lYd~f~~e~~~~~~~~~~~~p~~~~~eqyi~~~~f~~~f~~l~pw~~s~~~~~rlF~l~D~ 566 (671)
T KOG4347|consen 487 TILRSVVQTTSLTNTDLENLYDLFKEEHLTNSIGLGRSDPDFEAFEQYIDYAQFLEVFRELLPWAVSLIFLERLFRLLDD 566 (671)
T ss_pred HHHHhhcccCccCHHHHHHHHHHHHHHHhccCcccCCCCCCchHHHHHHHHhhHHHHhhccCchhHHHHHHHHHHHhccc
Confidence 34667777888999999999999985211 100 01122229999999
Q ss_pred CCCCcccHHHHHHHHHhhCCCCChHHHHHHHHhhhCCCCCCcccHHHH
Q 028605 77 KHNGILDFEEFARALSIFHPNSPIDDKIEFSFQLYDLKQQGFIERQEV 124 (206)
Q Consensus 77 ~~~g~i~f~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~It~~Ef 124 (206)
+.+|.++|.+++.++..++. +..-+++..+|+++|..++ ..+.+|.
T Consensus 567 s~~g~Ltf~~lv~gL~~l~~-~~~~ek~~l~y~lh~~p~~-~~d~e~~ 612 (671)
T KOG4347|consen 567 SMTGLLTFKDLVSGLSILKA-GDALEKLKLLYKLHDPPAD-ELDREEV 612 (671)
T ss_pred CCcceeEHHHHHHHHHHHHh-hhHHHHHHHHHhhccCCcc-ccccccc
Confidence 99999999999999998887 4788899999999999999 8998888
No 99
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.95 E-value=0.17 Score=46.33 Aligned_cols=62 Identities=18% Similarity=0.317 Sum_probs=47.8
Q ss_pred HHHHHHhhhCCCCCCcccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhh
Q 028605 103 KIEFSFQLYDLKQQGFIERQEVKQMVVATLTESGMNLSDDVIESIIDKTFEEADTKHDGKIDKEEWRNLVLR 174 (206)
Q Consensus 103 ~~~~~F~~~D~~~~g~It~~Ef~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~d~~g~Is~~eF~~~l~~ 174 (206)
+++.+|..+|+...|++|-..=+.+|. ...++...+. .+...-|.|+||+++-+||+-++.-
T Consensus 196 KY~QlFNa~DktrsG~Lsg~qaR~aL~------qS~Lpq~~LA----~IW~LsDvd~DGkL~~dEfilam~l 257 (1118)
T KOG1029|consen 196 KYRQLFNALDKTRSGYLSGQQARSALG------QSGLPQNQLA----HIWTLSDVDGDGKLSADEFILAMHL 257 (1118)
T ss_pred HHHHHhhhcccccccccccHHHHHHHH------hcCCchhhHh----hheeeeccCCCCcccHHHHHHHHHH
Confidence 367799999999999999988888753 2245544444 4447899999999999999877754
No 100
>KOG0039 consensus Ferric reductase, NADH/NADPH oxidase and related proteins [Inorganic ion transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=94.88 E-value=0.11 Score=47.52 Aligned_cols=96 Identities=27% Similarity=0.520 Sum_probs=78.0
Q ss_pred CCcccHHHHHHHHHhhCCCCChHHHHHHHHhhhCCCCCCcccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCC
Q 028605 79 NGILDFEEFARALSIFHPNSPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLTESGMNLSDDVIESIIDKTFEEADTK 158 (206)
Q Consensus 79 ~g~i~f~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~It~~Ef~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~d 158 (206)
++ ++++|+. ....+.+.+++..|.++|. ++|.++.+|+..++..+..............+....+++..|.+
T Consensus 2 ~~-~~~~~~~------~~~~~~d~~l~~~f~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (646)
T KOG0039|consen 2 EG-ISFQELK------ITDCSYDDKLQTFFDMYDK-GDGKLTEEEVRELIMSSISANWLSLIKKQTEEYAALIMEELDPD 73 (646)
T ss_pred CC-cchhhhc------ccCCChhHHHHHHHHHHhh-hcCCccHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHhhhhcccc
Confidence 56 8999988 2235788899999999999 99999999999998776665554555667777788888999999
Q ss_pred CCCcccHHHHHHHHhhChhHHhhh
Q 028605 159 HDGKIDKEEWRNLVLRHPSLLKNM 182 (206)
Q Consensus 159 ~~g~Is~~eF~~~l~~~~~~~~~~ 182 (206)
..|.+.+.++...+...|......
T Consensus 74 ~~~y~~~~~~~~ll~~~~~~~~~~ 97 (646)
T KOG0039|consen 74 HKGYITNEDLEILLLQIPTLLFAI 97 (646)
T ss_pred ccceeeecchhHHHHhchHHHHHH
Confidence 999999999999999888655543
No 101
>KOG0046 consensus Ca2+-binding actin-bundling protein (fimbrin/plastin), EF-Hand protein superfamily [Cytoskeleton]
Probab=94.68 E-value=0.18 Score=44.08 Aligned_cols=73 Identities=16% Similarity=0.241 Sum_probs=50.9
Q ss_pred hcCCCHHHHHHHHHHHHhhccCCcCccHHHHHHhHHcCCCCCcccHHHHHHHHHhhCCC--CChHHHHHHHHhhhCCCCC
Q 028605 39 ETVFSVSEIEALYELFKKISSAVIDDGLINKVFDLFDTKHNGILDFEEFARALSIFHPN--SPIDDKIEFSFQLYDLKQQ 116 (206)
Q Consensus 39 ~~~~s~~e~~~l~~~F~~~d~~~~~~g~i~~lf~~~d~~~~g~i~f~ef~~~~~~~~~~--~~~~~~~~~~F~~~D~~~~ 116 (206)
.+.+|++|+..+...|..++ + ++ |.|+..+....+...... ....++++.+....+.+.+
T Consensus 10 ~~~~tq~El~~l~~kF~~~d-~--~~---------------G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~ 71 (627)
T KOG0046|consen 10 QSQLTQEELRELKEKFNKLD-D--QK---------------GYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDAD 71 (627)
T ss_pred cccccHHHHHHHHHHHHhhc-C--CC---------------CeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcC
Confidence 35689999999999999888 4 34 456666666655443321 1235667777777788888
Q ss_pred CcccHHHHHHHHH
Q 028605 117 GFIERQEVKQMVV 129 (206)
Q Consensus 117 g~It~~Ef~~~l~ 129 (206)
|.|+++||..+.-
T Consensus 72 g~v~fe~f~~~~~ 84 (627)
T KOG0046|consen 72 GRVEFEEFVGIFL 84 (627)
T ss_pred CccCHHHHHHHHH
Confidence 8888888888643
No 102
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=94.60 E-value=0.24 Score=45.14 Aligned_cols=116 Identities=16% Similarity=0.210 Sum_probs=83.4
Q ss_pred HHHHHhHHcCCCCCcccHHHHHHHHHhhCCCCChHHHHHHHHhhhCCCCCCcccHHHHHHHHHHHHHhcCCCCCHHHHHH
Q 028605 67 INKVFDLFDTKHNGILDFEEFARALSIFHPNSPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLTESGMNLSDDVIES 146 (206)
Q Consensus 67 i~~lf~~~d~~~~g~i~f~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~It~~Ef~~~l~~~~~~~~~~~~~~~~~~ 146 (206)
+..+|...|.+++|.+++.+-..++..+... -...+++..|+-.+..+++.+..+++....... +... +
T Consensus 138 i~~~~~~ad~~~~~~~~~~~~~~~~~~~n~~-l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~----~~rp---e--- 206 (746)
T KOG0169|consen 138 IHSIFQEADKNKNGHMSFDEVLDLLKQLNVQ-LSESKARRLFKESDNSQTGKLEEEEFVKFRKEL----TKRP---E--- 206 (746)
T ss_pred HHHHHHHHccccccccchhhHHHHHHHHHHh-hhHHHHHHHHHHHHhhccceehHHHHHHHHHhh----ccCc---h---
Confidence 3349999999999999999999998776653 677788899999999999999999999974332 2222 2
Q ss_pred HHHHHHHHhCCCCCCcccHHHHHHHHhhChhHHhhhhhhhhhhhhhccCc
Q 028605 147 IIDKTFEEADTKHDGKIDKEEWRNLVLRHPSLLKNMTLQYLKDITTTFPS 196 (206)
Q Consensus 147 ~~~~~f~~~d~d~~g~Is~~eF~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 196 (206)
+..+|.....+ .+.++.+++..++...... ...++....+|+..|.+
T Consensus 207 -v~~~f~~~s~~-~~~ls~~~L~~Fl~~~q~e-~~~~~~~ae~ii~~~e~ 253 (746)
T KOG0169|consen 207 -VYFLFVQYSHG-KEYLSTDDLLRFLEEEQGE-DGATLDEAEEIIERYEP 253 (746)
T ss_pred -HHHHHHHHhCC-CCccCHHHHHHHHHHhccc-ccccHHHHHHHHHHhhh
Confidence 23333444433 6778888888777665322 34677777778777733
No 103
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=94.54 E-value=0.027 Score=46.26 Aligned_cols=68 Identities=25% Similarity=0.310 Sum_probs=53.7
Q ss_pred HHHHHHhhhCCCCCCcccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhhChh
Q 028605 103 KIEFSFQLYDLKQQGFIERQEVKQMVVATLTESGMNLSDDVIESIIDKTFEEADTKHDGKIDKEEWRNLVLRHPS 177 (206)
Q Consensus 103 ~~~~~F~~~D~~~~g~It~~Ef~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~d~~g~Is~~eF~~~l~~~~~ 177 (206)
.+.+-|..+|+|.++.|.+.|++.+=..+.. ...+....+.+|+.+|.|+|..||++||...|-..++
T Consensus 334 vv~w~F~qLdkN~nn~i~rrEwKpFK~~l~k-------~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~~~~ 401 (421)
T KOG4578|consen 334 VVHWYFNQLDKNSNNDIERREWKPFKRVLLK-------KSKPRKCSRKFFKYCDLNKDKKISLDEWRGCLGVEKE 401 (421)
T ss_pred eeeeeeeeecccccCccchhhcchHHHHHHh-------hccHHHHhhhcchhcccCCCceecHHHHhhhhccccc
Confidence 5778899999999999999998875322211 1235567788889999999999999999998876554
No 104
>KOG0169 consensus Phosphoinositide-specific phospholipase C [Signal transduction mechanisms]
Probab=94.17 E-value=0.87 Score=41.67 Aligned_cols=124 Identities=15% Similarity=0.279 Sum_probs=88.6
Q ss_pred CCHHHHHHHHHHHHhhccCCcCccHHHH---------------------HHhHHcCCCCCcccHHHHHHHHHhhCCCCCh
Q 028605 42 FSVSEIEALYELFKKISSAVIDDGLINK---------------------VFDLFDTKHNGILDFEEFARALSIFHPNSPI 100 (206)
Q Consensus 42 ~s~~e~~~l~~~F~~~d~~~~~~g~i~~---------------------lf~~~d~~~~g~i~f~ef~~~~~~~~~~~~~ 100 (206)
.......-+...|+..|++ .+|.+.. +|...+..+++++.+.++..+....... +
T Consensus 130 ~~~~~~~wi~~~~~~ad~~--~~~~~~~~~~~~~~~~~n~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~r-p- 205 (746)
T KOG0169|consen 130 QRSRREHWIHSIFQEADKN--KNGHMSFDEVLDLLKQLNVQLSESKARRLFKESDNSQTGKLEEEEFVKFRKELTKR-P- 205 (746)
T ss_pred hcchHHHHHHHHHHHHccc--cccccchhhHHHHHHHHHHhhhHHHHHHHHHHHHhhccceehHHHHHHHHHhhccC-c-
Confidence 4445556667788888888 6665554 8888888889999999999998777653 2
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhh
Q 028605 101 DDKIEFSFQLYDLKQQGFIERQEVKQMVVATLTESGMNLSDDVIESIIDKTFEEADTKHDGKIDKEEWRNLVLR 174 (206)
Q Consensus 101 ~~~~~~~F~~~D~~~~g~It~~Ef~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~d~~g~Is~~eF~~~l~~ 174 (206)
++..+|..+-.+ .+.++.+++..++... + -....+.+.++++++..=..-..-..+.++.+.|.+.|..
T Consensus 206 --ev~~~f~~~s~~-~~~ls~~~L~~Fl~~~-q-~e~~~~~~~ae~ii~~~e~~k~~~~~~~l~ldgF~~yL~S 274 (746)
T KOG0169|consen 206 --EVYFLFVQYSHG-KEYLSTDDLLRFLEEE-Q-GEDGATLDEAEEIIERYEPSKEFRRHGLLSLDGFTRYLFS 274 (746)
T ss_pred --hHHHHHHHHhCC-CCccCHHHHHHHHHHh-c-ccccccHHHHHHHHHHhhhhhhccccceecHHHHHHHhcC
Confidence 577778777444 8899999999997543 1 1235666777777754322222335667999999999865
No 105
>PLN02952 phosphoinositide phospholipase C
Probab=94.11 E-value=0.66 Score=41.87 Aligned_cols=93 Identities=10% Similarity=0.251 Sum_probs=64.1
Q ss_pred CCCcccHHHHHHHHHhhCC-CCChHHHHHHHHhhhCCCCCCcccHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHh
Q 028605 78 HNGILDFEEFARALSIFHP-NSPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLTESG-MNLSDDVIESIIDKTFEEA 155 (206)
Q Consensus 78 ~~g~i~f~ef~~~~~~~~~-~~~~~~~~~~~F~~~D~~~~g~It~~Ef~~~l~~~~~~~~-~~~~~~~~~~~~~~~f~~~ 155 (206)
..|.++|++|..+...+-. ......++..+|..+-. +.+.++.++|..+|... -+ ...+.+.++.++..++...
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~-~~~~mt~~~l~~FL~~~---Q~e~~~~~~~~~~i~~~~~~~~ 88 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSV-GGGHMGADQLRRFLVLH---QDELDCTLAEAQRIVEEVINRR 88 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhC-CCCccCHHHHHHHHHHh---CCCcCCCHHHHHHHHHHHHhhc
Confidence 4589999999888766542 22356779999999954 44689999999997543 22 2356666777766544332
Q ss_pred C---CCCCCcccHHHHHHHHhh
Q 028605 156 D---TKHDGKIDKEEWRNLVLR 174 (206)
Q Consensus 156 d---~d~~g~Is~~eF~~~l~~ 174 (206)
. ..+.+.++++.|..+|..
T Consensus 89 ~~~~~~~~~~l~~~~F~~~l~s 110 (599)
T PLN02952 89 HHVTRYTRHGLNLDDFFHFLLY 110 (599)
T ss_pred cccccccccCcCHHHHHHHHcC
Confidence 2 123346899999999974
No 106
>KOG2562 consensus Protein phosphatase 2 regulatory subunit [RNA processing and modification]
Probab=93.87 E-value=0.32 Score=41.96 Aligned_cols=99 Identities=13% Similarity=0.191 Sum_probs=76.9
Q ss_pred HHhHHcCCCCCcccHHHHHHHHHhhCCCCChHHHHHHHHhhhCCCCCCcccHHHHHHHHHHHHHhcC-------CCCCHH
Q 028605 70 VFDLFDTKHNGILDFEEFARALSIFHPNSPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLTESG-------MNLSDD 142 (206)
Q Consensus 70 lf~~~d~~~~g~i~f~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~It~~Ef~~~l~~~~~~~~-------~~~~~~ 142 (206)
+|..++.+..|.|+-..|+..+..... .....+...++.++..+.|++..++|+..+..++.... +.....
T Consensus 144 ~f~k~~~d~~g~it~~~Fi~~~~~~~~--l~~t~~~~~v~~l~~~~~~yl~q~df~~~Lqeli~Thpl~~l~~~pEf~~~ 221 (493)
T KOG2562|consen 144 TFRKIDGDDTGHITRDKFINYWMRGLM--LTHTRLEQFVNLLIQAGCSYLRQDDFKPYLQELIATHPLEFLDEEPEFQER 221 (493)
T ss_pred hhhhhccCcCCceeHHHHHHHHHhhhh--HHHHHHHHHHHHHhccCccceeccccHHHHHHHHhcCCchhhccChhHHHH
Confidence 899999999999999999999866543 56667888999999999999999999998776554322 111223
Q ss_pred HHHHHHHHHHHHhCCCCCCcccHHHHHH
Q 028605 143 VIESIIDKTFEEADTKHDGKIDKEEWRN 170 (206)
Q Consensus 143 ~~~~~~~~~f~~~d~d~~g~Is~~eF~~ 170 (206)
-+...+.++|=.++....|+|+..+...
T Consensus 222 Y~~tvi~rIFy~~nrs~tG~iti~el~~ 249 (493)
T KOG2562|consen 222 YAETVIQRIFYYLNRSRTGRITIQELLR 249 (493)
T ss_pred HHHHHhhhhheeeCCccCCceeHHHHHH
Confidence 3445567777788999999999987754
No 107
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=93.42 E-value=0.38 Score=44.91 Aligned_cols=59 Identities=22% Similarity=0.183 Sum_probs=25.3
Q ss_pred HHhHHcCCCCCcccHHHHHHHHHhhCCCCCh-HHHHHHHHhhh---CCCCCCcccHHHHHHHH
Q 028605 70 VFDLFDTKHNGILDFEEFARALSIFHPNSPI-DDKIEFSFQLY---DLKQQGFIERQEVKQMV 128 (206)
Q Consensus 70 lf~~~d~~~~g~i~f~ef~~~~~~~~~~~~~-~~~~~~~F~~~---D~~~~g~It~~Ef~~~l 128 (206)
+|+.++....|..++++|..++-........ ++-+...|++. |.++.|.+++.+|.+.+
T Consensus 752 le~~~~~~d~~aa~~e~~~~~Lmslg~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl 814 (890)
T KOG0035|consen 752 LENEQDKIDGGAASPEELLRCLMSLGYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDL 814 (890)
T ss_pred HHhHHHHhhcccCCHHHHHHHHHhcCcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHh
Confidence 4444444444445555555555444332111 22223333333 33334555555555543
No 108
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=92.00 E-value=0.37 Score=31.50 Aligned_cols=61 Identities=16% Similarity=0.309 Sum_probs=48.0
Q ss_pred HHHHHhHHcCCCCCcccHHHHHHHHHhhCCC-CChHHHHHHHHhhhCCC----CCCcccHHHHHHHH
Q 028605 67 INKVFDLFDTKHNGILDFEEFARALSIFHPN-SPIDDKIEFSFQLYDLK----QQGFIERQEVKQMV 128 (206)
Q Consensus 67 i~~lf~~~d~~~~g~i~f~ef~~~~~~~~~~-~~~~~~~~~~F~~~D~~----~~g~It~~Ef~~~l 128 (206)
|..+|..+.. +.+.++.++|..++...... ..+.+.+..+++.|..+ ..+.+|.++|...|
T Consensus 2 i~~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL 67 (83)
T PF09279_consen 2 IEEIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFL 67 (83)
T ss_dssp HHHHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHH
T ss_pred HHHHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHH
Confidence 4567888855 67789999999999876654 24678888899988654 47899999999987
No 109
>KOG4286 consensus Dystrophin-like protein [Cell motility; Signal transduction mechanisms; Cytoskeleton]
Probab=91.01 E-value=0.58 Score=42.76 Aligned_cols=109 Identities=12% Similarity=0.236 Sum_probs=77.0
Q ss_pred HHhHHcCCCCCcccHHHHHHHHHhhCCCCChHHHHHHHHhhhCCCCCCcccHHHHHHHHHHHHH---hcCCC--CCHHHH
Q 028605 70 VFDLFDTKHNGILDFEEFARALSIFHPNSPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLT---ESGMN--LSDDVI 144 (206)
Q Consensus 70 lf~~~d~~~~g~i~f~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~It~~Ef~~~l~~~~~---~~~~~--~~~~~~ 144 (206)
++++||+..+|.|..-+|...+..+|+ ...+++++.+|+.....+...+ ...|..++..+.+ .+|+. ..-..+
T Consensus 475 llNvyD~~R~g~irvls~ki~~i~lck-~~leek~~ylF~~vA~~~sq~~-q~~l~lLL~dliqipr~lGE~aAfGgsNv 552 (966)
T KOG4286|consen 475 LLNVYDTGRTGRIRVLSFKIGIISLCK-AHLEDKYRYLFKQVASSTSQCD-QRRLGLLLHDLIQIPRQLGEVAAFGGSNI 552 (966)
T ss_pred HHHhcccCCCcceEEeeehhhHHHHhc-chhHHHHHHHHHHHcCchhhHH-HHHHHHHHHHHHHHHHHHhHHHhhcCCCC
Confidence 999999999999999999999999988 5889999999999976666544 6666666543332 22210 000112
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHhhChhHHhhh
Q 028605 145 ESIIDKTFEEADTKHDGKIDKEEWRNLVLRHPSLLKNM 182 (206)
Q Consensus 145 ~~~~~~~f~~~d~d~~g~Is~~eF~~~l~~~~~~~~~~ 182 (206)
+..++..|+ ..++.-.|++..|..|+...|-.+-|+
T Consensus 553 epsvrsCF~--~v~~~pei~~~~f~dw~~~epqsmVwL 588 (966)
T KOG4286|consen 553 EPSVRSCFQ--FVNNKPEIEAALFLDWMRLEPQSMVWL 588 (966)
T ss_pred ChHHHHHHH--hcCCCCcchHHHHHHHhccCcchhhHH
Confidence 334555555 234566899999999999988766554
No 110
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=89.76 E-value=0.27 Score=40.65 Aligned_cols=59 Identities=17% Similarity=0.186 Sum_probs=48.1
Q ss_pred HHhHHcCCCCCcccHHHHHHHHHhhCCCCChHHHHHHHHhhhCCCCCCcccHHHHHHHH
Q 028605 70 VFDLFDTKHNGILDFEEFARALSIFHPNSPIDDKIEFSFQLYDLKQQGFIERQEVKQMV 128 (206)
Q Consensus 70 lf~~~d~~~~g~i~f~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~It~~Ef~~~l 128 (206)
-|..+|+|.++.|+-.|+..+-..+........=.+.+|+..|.|+|..|+..|++.-|
T Consensus 338 ~F~qLdkN~nn~i~rrEwKpFK~~l~k~s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL 396 (421)
T KOG4578|consen 338 YFNQLDKNSNNDIERREWKPFKRVLLKKSKPRKCSRKFFKYCDLNKDKKISLDEWRGCL 396 (421)
T ss_pred eeeeecccccCccchhhcchHHHHHHhhccHHHHhhhcchhcccCCCceecHHHHhhhh
Confidence 78899999999999999887776655433344446778999999999999999999875
No 111
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=89.73 E-value=1.6 Score=35.96 Aligned_cols=70 Identities=23% Similarity=0.339 Sum_probs=48.3
Q ss_pred HHHHhhhCCCCCCcccHHHHHHHHHHHHHhc-CCCCCHH-------HHHHHHHHHHHHhCCCCCCcccHHHHHHHHhh
Q 028605 105 EFSFQLYDLKQQGFIERQEVKQMVVATLTES-GMNLSDD-------VIESIIDKTFEEADTKHDGKIDKEEWRNLVLR 174 (206)
Q Consensus 105 ~~~F~~~D~~~~g~It~~Ef~~~l~~~~~~~-~~~~~~~-------~~~~~~~~~f~~~d~d~~g~Is~~eF~~~l~~ 174 (206)
+..|.+.|.|++|.++-.|+..+...=+... .+.-.++ +.-.+=..++...|.|.|.-||.+||...--+
T Consensus 247 KTFF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHVMk~vDtNqDRlvtleEFL~~t~~ 324 (442)
T KOG3866|consen 247 KTFFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHVMKQVDTNQDRLVTLEEFLNDTDN 324 (442)
T ss_pred chheeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHHHHhcccchhhhhhHHHHHhhhhh
Confidence 4578899999999999999998764333221 2221122 22233455778899999999999999876543
No 112
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=89.35 E-value=1.1 Score=40.35 Aligned_cols=78 Identities=17% Similarity=0.208 Sum_probs=50.6
Q ss_pred ccHHHHHHHHHhhCCCCChHHHHHHHHhhhCCCCCCcccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCCC
Q 028605 82 LDFEEFARALSIFHPNSPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLTESGMNLSDDVIESIIDKTFEEADTKHDG 161 (206)
Q Consensus 82 i~f~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~It~~Ef~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~d~~g 161 (206)
|+|..|...+..+.+-.....-++.+|+.+|.+++|.|++.+|...+..+.. .++-+-+.-+|+.+|.+++
T Consensus 535 i~~~~f~~~f~~l~pw~~s~~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~--------~~~~ek~~l~y~lh~~p~~- 605 (671)
T KOG4347|consen 535 IDYAQFLEVFRELLPWAVSLIFLERLFRLLDDSMTGLLTFKDLVSGLSILKA--------GDALEKLKLLYKLHDPPAD- 605 (671)
T ss_pred HHHhhHHHHhhccCchhHHHHHHHHHHHhcccCCcceeEHHHHHHHHHHHHh--------hhHHHHHHHHHhhccCCcc-
Confidence 3444444444433331123344678999999999999999999998766522 1233445677888888877
Q ss_pred cccHHHH
Q 028605 162 KIDKEEW 168 (206)
Q Consensus 162 ~Is~~eF 168 (206)
....++-
T Consensus 606 ~~d~e~~ 612 (671)
T KOG4347|consen 606 ELDREEV 612 (671)
T ss_pred ccccccc
Confidence 6666554
No 113
>KOG4666 consensus Predicted phosphate acyltransferase, contains PlsC domain [Lipid transport and metabolism]
Probab=88.44 E-value=1.1 Score=37.06 Aligned_cols=84 Identities=21% Similarity=0.310 Sum_probs=59.7
Q ss_pred CCcccHHHHHHHHHhhCCCCChHHHHHHHHhhhCCCCCCcccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCC
Q 028605 79 NGILDFEEFARALSIFHPNSPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLTESGMNLSDDVIESIIDKTFEEADTK 158 (206)
Q Consensus 79 ~g~i~f~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~It~~Ef~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~d 158 (206)
.+.|.-.||...+.. +....+...|.+||.+++|.+++.|-...+..+ .++..+. .++...|+.++..
T Consensus 241 g~~igi~efa~~l~v-----pvsd~l~~~f~LFde~~tg~~D~re~v~~lavl---c~p~~t~----~iiq~afk~f~v~ 308 (412)
T KOG4666|consen 241 GPDIGIVEFAVNLRV-----PVSDKLAPTFMLFDEGTTGNGDYRETVKTLAVL---CGPPVTP----VIIQYAFKRFSVA 308 (412)
T ss_pred CCCcceeEeeeeeec-----chhhhhhhhhheecCCCCCcccHHHHhhhheee---eCCCCcH----HHHHHHHHhcccc
Confidence 344545555444422 334568889999999999999999888765332 4555554 3566777999999
Q ss_pred CCCcccHHHHHHHHhh
Q 028605 159 HDGKIDKEEWRNLVLR 174 (206)
Q Consensus 159 ~~g~Is~~eF~~~l~~ 174 (206)
.||.+.-.+|..++..
T Consensus 309 eDg~~ge~~ls~ilq~ 324 (412)
T KOG4666|consen 309 EDGISGEHILSLILQV 324 (412)
T ss_pred cccccchHHHHHHHHH
Confidence 9999998888777754
No 114
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.95 E-value=0.61 Score=40.71 Aligned_cols=28 Identities=14% Similarity=0.248 Sum_probs=20.5
Q ss_pred hcCCCHHHHHHHHHHHHhhccCCcCccHHH
Q 028605 39 ETVFSVSEIEALYELFKKISSAVIDDGLIN 68 (206)
Q Consensus 39 ~~~~s~~e~~~l~~~F~~~d~~~~~~g~i~ 68 (206)
-..+|+++-++-.+.|+.+.+| .+|+|.
T Consensus 222 pw~IT~EQReYYvnQFrtvQpD--p~gfis 249 (737)
T KOG1955|consen 222 PWQITPEQREYYVNQFRTVQPD--PHGFIS 249 (737)
T ss_pred ccccCHHHHHHHHhhhhcccCC--cccccc
Confidence 3467788888888888888777 666654
No 115
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=87.28 E-value=1.9 Score=32.52 Aligned_cols=30 Identities=20% Similarity=0.222 Sum_probs=25.4
Q ss_pred HHHHHHHHhhhCCCCCCcccHHHHHHHHHH
Q 028605 101 DDKIEFSFQLYDLKQQGFIERQEVKQMVVA 130 (206)
Q Consensus 101 ~~~~~~~F~~~D~~~~g~It~~Ef~~~l~~ 130 (206)
.++++.+|..+++.+.+.+|..|+..++..
T Consensus 95 p~kFe~iF~kya~~~~d~LT~~E~~~m~~~ 124 (174)
T PF05042_consen 95 PQKFEEIFSKYAKTGPDALTLRELWRMLKG 124 (174)
T ss_pred HHHHHHHHHHhCCCCCCCcCHHHHHHHHHh
Confidence 467888999999888889999999998753
No 116
>KOG4301 consensus Beta-dystrobrevin [Cytoskeleton]
Probab=87.01 E-value=4.4 Score=33.87 Aligned_cols=120 Identities=17% Similarity=0.246 Sum_probs=78.1
Q ss_pred HHhHHcCCCCCcccHHHHHHHHHhhCCCCChHHHHHHHHhhhCCCCCCcccHHHHHHHHHHHHHhcCC---CCCHHHHHH
Q 028605 70 VFDLFDTKHNGILDFEEFARALSIFHPNSPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLTESGM---NLSDDVIES 146 (206)
Q Consensus 70 lf~~~d~~~~g~i~f~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~It~~Ef~~~l~~~~~~~~~---~~~~~~~~~ 146 (206)
++.++|+.+.|.++.--....+..+|. +.-.++++.+|.+. .+++|.+....+.+++...+..+.+ ..+..--+.
T Consensus 115 lLaA~ds~~~g~~~vfavkialatlc~-gk~~dklryIfs~i-sds~gim~~i~~~~fl~evlslpT~v~e~psfg~te~ 192 (434)
T KOG4301|consen 115 LLAAEDSEGQGKQQVFAVKIALATLCG-GKIKDKLRYIFSLI-SDSRGIMQEIQRDQFLHEVLSLPTAVFEGPSFGYTEL 192 (434)
T ss_pred HHhhcCccCCCCceeecchhhhhhhcc-chHHHHHHHHHHHH-ccchHHHHHHHHHHHHHHHHcCCchhhcCCCcchHHH
Confidence 788899999999988888888888887 57888999999998 4567777777777766544443221 111111122
Q ss_pred HHHHHHHHhCCCCCCcccHHHHHHHHhhChh--HHhhh-hhhhhhhhhhccCc
Q 028605 147 IIDKTFEEADTKHDGKIDKEEWRNLVLRHPS--LLKNM-TLQYLKDITTTFPS 196 (206)
Q Consensus 147 ~~~~~f~~~d~d~~g~Is~~eF~~~l~~~~~--~~~~~-~~~~~~~~~~~~~~ 196 (206)
.++.-|. .+..++.+.|...+...|. .+.|+ .+.-++.....||+
T Consensus 193 ~a~~cf~-----qqrKv~Ln~fldtl~sdp~p~cl~wlpLmhrla~v~nv~hp 240 (434)
T KOG4301|consen 193 SARLCFL-----QQRKVELNQFLDTLMSDPPPQCLVWLPLMHRLATVENVFHP 240 (434)
T ss_pred HHHHHHH-----HHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhhcccCCC
Confidence 3332221 2356899999999988754 44444 34555666666643
No 117
>KOG1955 consensus Ral-GTPase effector RALBP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.11 E-value=2.3 Score=37.27 Aligned_cols=63 Identities=19% Similarity=0.258 Sum_probs=48.2
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhh
Q 028605 102 DKIEFSFQLYDLKQQGFIERQEVKQMVVATLTESGMNLSDDVIESIIDKTFEEADTKHDGKIDKEEWRNLVLR 174 (206)
Q Consensus 102 ~~~~~~F~~~D~~~~g~It~~Ef~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~d~~g~Is~~eF~~~l~~ 174 (206)
+.+..-|+.+-.|-.|.|+-.--+++..+ ..+.-+++.+++ +..|.|.||.+++.||+.++.-
T Consensus 231 eYYvnQFrtvQpDp~gfisGsaAknFFtK------Sklpi~ELshIW----eLsD~d~DGALtL~EFcAAfHL 293 (737)
T KOG1955|consen 231 EYYVNQFRTVQPDPHGFISGSAAKNFFTK------SKLPIEELSHIW----ELSDVDRDGALTLSEFCAAFHL 293 (737)
T ss_pred HHHHhhhhcccCCcccccccHHHHhhhhh------ccCchHHHHHHH----hhcccCccccccHHHHHhhHhh
Confidence 44566788888899999998776666432 356656665555 8999999999999999998853
No 118
>KOG4065 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.87 E-value=3 Score=29.30 Aligned_cols=58 Identities=22% Similarity=0.296 Sum_probs=39.8
Q ss_pred HHhHHcCCCCCcccHHHHHHHHHhhCC---------CCChHHHHHH----HHhhhCCCCCCcccHHHHHHH
Q 028605 70 VFDLFDTKHNGILDFEEFARALSIFHP---------NSPIDDKIEF----SFQLYDLKQQGFIERQEVKQM 127 (206)
Q Consensus 70 lf~~~d~~~~g~i~f~ef~~~~~~~~~---------~~~~~~~~~~----~F~~~D~~~~g~It~~Ef~~~ 127 (206)
.|...|-|+++.++=-|...+++..-. ..+++.++.. +.+--|.|++|+|++.||...
T Consensus 72 YF~MHDldknn~lDGiEl~kAiTH~H~~h~~ghep~Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 72 YFSMHDLDKNNFLDGIELLKAITHTHDAHDSGHEPVPLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLKR 142 (144)
T ss_pred hhhhhccCcCCcchHHHHHHHHHHHhhhhhcCCCCCCCCCHHHHHHHHHHHhcccccCCCceeeHHHHHhh
Confidence 677777888888888887777754432 1123444444 455568999999999999763
No 119
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=85.66 E-value=6.1 Score=28.76 Aligned_cols=70 Identities=17% Similarity=0.216 Sum_probs=40.3
Q ss_pred cCCCHHHHHHHHHHHHhhccCCcCccHHHHHHhHHcCC-------CCCcccHHHHHHHHHhhCCCCChHHHHHHHHhhhC
Q 028605 40 TVFSVSEIEALYELFKKISSAVIDDGLINKVFDLFDTK-------HNGILDFEEFARALSIFHPNSPIDDKIEFSFQLYD 112 (206)
Q Consensus 40 ~~~s~~e~~~l~~~F~~~d~~~~~~g~i~~lf~~~d~~-------~~g~i~f~ef~~~~~~~~~~~~~~~~~~~~F~~~D 112 (206)
..+|+.|..++.+-... + ...+..++..|..+ ..+.|+|+.|..++........+++-.+.+|..|-
T Consensus 6 ~~lsp~eF~qLq~y~ey-s-----~kklkdvl~eF~~~g~~~~~~~~~~Id~egF~~Fm~~yLe~d~P~~lc~hLF~sF~ 79 (138)
T PF14513_consen 6 VSLSPEEFAQLQKYSEY-S-----TKKLKDVLKEFHGDGSLAKYNPEEPIDYEGFKLFMKTYLEVDLPEDLCQHLFLSFQ 79 (138)
T ss_dssp S-S-HHHHHHHHHHHHH----------HHHHHHHH-HTSGGGGGEETTEE-HHHHHHHHHHHTT-S--HHHHHHHHHHS-
T ss_pred eccCHHHHHHHHHHHHH-H-----HHHHHHHHHHHhcCCcccccCCCCCcCHHHHHHHHHHHHcCCCCHHHHHHHHHHHh
Confidence 44677777777654432 2 12455555555333 35689999999999998876677888899999995
Q ss_pred CCC
Q 028605 113 LKQ 115 (206)
Q Consensus 113 ~~~ 115 (206)
...
T Consensus 80 ~~~ 82 (138)
T PF14513_consen 80 KKP 82 (138)
T ss_dssp ---
T ss_pred Ccc
Confidence 444
No 120
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=83.55 E-value=1.1 Score=42.29 Aligned_cols=123 Identities=24% Similarity=0.391 Sum_probs=90.3
Q ss_pred CCCHHHHHHHHHHHHhhccCCcCccHHHH-------------------HHhHHcCCCCCcccHHHHHHHHHhhCC--C--
Q 028605 41 VFSVSEIEALYELFKKISSAVIDDGLINK-------------------VFDLFDTKHNGILDFEEFARALSIFHP--N-- 97 (206)
Q Consensus 41 ~~s~~e~~~l~~~F~~~d~~~~~~g~i~~-------------------lf~~~d~~~~g~i~f~ef~~~~~~~~~--~-- 97 (206)
.++..+.......|..+.+. +|.+.. ++...|.+.+|.+++.||...++.... +
T Consensus 122 ~~~~qe~aky~q~f~s~~p~---~g~~sg~~~~pil~~s~Lp~~~l~~iw~l~d~d~~g~Ld~~ef~~am~l~~~~l~~~ 198 (847)
T KOG0998|consen 122 AITPQEQAKYDQIFRSLSPS---NGLLSGDKAKPILLNSKLPSDVLGRIWELSDIDKDGNLDRDEFAVAMHLINDLLNGN 198 (847)
T ss_pred CCCHHHHHHHHHHHhccCCC---CCccccchhhhhhhcCCCChhhhccccccccccccCCCChhhhhhhhhHHHHHhhcc
Confidence 46788888888889998885 443332 888999999999999999988754211 0
Q ss_pred ------------------------------------------------------------------------------C-
Q 028605 98 ------------------------------------------------------------------------------S- 98 (206)
Q Consensus 98 ------------------------------------------------------------------------------~- 98 (206)
.
T Consensus 199 ~~p~P~~~p~~lIpps~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~s~~~~~~s~~~~~~~~~~q~~~s~~~~vs 278 (847)
T KOG0998|consen 199 SEPVPSRLPPSLIPPSKSELSANSSSKAIPFSQPFLASMASPTTLSSLVDLSALNSNPSLSSLSLASSMQLIVSWSPKVS 278 (847)
T ss_pred cCCCCccCCcccCCcchhcccccCcccccccccccccccccccccccccchhcccCCccccccccccccccccccCcccC
Confidence 0
Q ss_pred -ChHHHHHHHHhhhCCCCCCcccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhhCh
Q 028605 99 -PIDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLTESGMNLSDDVIESIIDKTFEEADTKHDGKIDKEEWRNLVLRHP 176 (206)
Q Consensus 99 -~~~~~~~~~F~~~D~~~~g~It~~Ef~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~d~~g~Is~~eF~~~l~~~~ 176 (206)
.....+..+|...|.+++|.|+..+....+.. ..++...++..+ ...|..+.|.+++.+|.-.+....
T Consensus 279 p~d~~~~~~if~q~d~~~dG~I~s~~~~~~f~~------~gl~~~~l~~~w----~l~d~~n~~~ls~~ef~~~~~~~~ 347 (847)
T KOG0998|consen 279 PSDKQKYSKIFSQVDKDNDGSISSNEARNIFLP------FGLSKPRLAHVW----LLADTQNTGTLSKDEFALAMHLLE 347 (847)
T ss_pred hHHHHHHHHHHHhccccCCCccccccccccccc------CCCChhhhhhhh----hhcchhccCcccccccchhhhhhh
Confidence 01233555789999999999999999987422 355555555555 789999999999998877765543
No 121
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=82.81 E-value=3.1 Score=31.40 Aligned_cols=35 Identities=6% Similarity=0.077 Sum_probs=26.6
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHhhChhHHh
Q 028605 146 SIIDKTFEEADTKHDGKIDKEEWRNLVLRHPSLLK 180 (206)
Q Consensus 146 ~~~~~~f~~~d~d~~g~Is~~eF~~~l~~~~~~~~ 180 (206)
.-++.+|..++..+.+.+|+.|..++++.+.+...
T Consensus 96 ~kFe~iF~kya~~~~d~LT~~E~~~m~~~nr~~~D 130 (174)
T PF05042_consen 96 QKFEEIFSKYAKTGPDALTLRELWRMLKGNRNAND 130 (174)
T ss_pred HHHHHHHHHhCCCCCCCcCHHHHHHHHHhccccCC
Confidence 34566678888877788999999999888666444
No 122
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=82.80 E-value=2.3 Score=35.10 Aligned_cols=82 Identities=16% Similarity=0.236 Sum_probs=55.5
Q ss_pred CHHHHHHHHHHHHhhccCCcCccHHHHHHhHHcCCCCCcccHHHHHHHHHhh----CCCCChH--------HHH---HHH
Q 028605 43 SVSEIEALYELFKKISSAVIDDGLINKVFDLFDTKHNGILDFEEFARALSIF----HPNSPID--------DKI---EFS 107 (206)
Q Consensus 43 s~~e~~~l~~~F~~~d~~~~~~g~i~~lf~~~d~~~~g~i~f~ef~~~~~~~----~~~~~~~--------~~~---~~~ 107 (206)
|..++.+.|.--+.++++ .-. -...|...|.|++|.++-.|.-+++..- ....+.+ +++ ..+
T Consensus 225 SkdQLkEVWEE~DgLdpn--~fd-PKTFF~LHD~NsDGfldeqELEaLFtkELEKvYdpkNeeDDM~EmeEErlRMREHV 301 (442)
T KOG3866|consen 225 SKDQLKEVWEESDGLDPN--QFD-PKTFFALHDLNSDGFLDEQELEALFTKELEKVYDPKNEEDDMKEMEEERLRMREHV 301 (442)
T ss_pred cHHHHHHHHHHhcCCCcc--cCC-cchheeeeccCCcccccHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHH
Confidence 566666666666666654 111 1228899999999999999988887643 2211211 112 336
Q ss_pred HhhhCCCCCCcccHHHHHHH
Q 028605 108 FQLYDLKQQGFIERQEVKQM 127 (206)
Q Consensus 108 F~~~D~~~~g~It~~Ef~~~ 127 (206)
.+..|+|.+..||.+||...
T Consensus 302 Mk~vDtNqDRlvtleEFL~~ 321 (442)
T KOG3866|consen 302 MKQVDTNQDRLVTLEEFLND 321 (442)
T ss_pred HHhcccchhhhhhHHHHHhh
Confidence 77789999999999999886
No 123
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=82.57 E-value=2.7 Score=41.54 Aligned_cols=59 Identities=15% Similarity=0.354 Sum_probs=44.8
Q ss_pred HHhhhCCCCCCcccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhh
Q 028605 107 SFQLYDLKQQGFIERQEVKQMVVATLTESGMNLSDDVIESIIDKTFEEADTKHDGKIDKEEWRNLVLR 174 (206)
Q Consensus 107 ~F~~~D~~~~g~It~~Ef~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~d~~g~Is~~eF~~~l~~ 174 (206)
.|+-||.||.|.|+..+|..++.. ....+.-+++-++ .....|.+...+|++|+.-+..
T Consensus 4062 tfkeydpdgkgiiskkdf~kame~-----~k~ytqse~dfll----scae~dend~~~y~dfv~rfhe 4120 (5019)
T KOG2243|consen 4062 TFKEYDPDGKGIISKKDFHKAMEG-----HKHYTQSEIDFLL----SCAEADENDMFDYEDFVDRFHE 4120 (5019)
T ss_pred cchhcCCCCCccccHHHHHHHHhc-----cccchhHHHHHHH----HhhccCccccccHHHHHHHhcC
Confidence 578899999999999999998643 3445555555444 5667777888999999887754
No 124
>KOG1265 consensus Phospholipase C [Lipid transport and metabolism]
Probab=80.00 E-value=16 Score=34.62 Aligned_cols=85 Identities=16% Similarity=0.313 Sum_probs=65.1
Q ss_pred ccHHHHHHHHHhhCCCCChHHHHHHHHhhhCCCCCCcccHHHHHHHHHHHHHh------cCCCCCHHHHHHHHHHHHHHh
Q 028605 82 LDFEEFARALSIFHPNSPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLTE------SGMNLSDDVIESIIDKTFEEA 155 (206)
Q Consensus 82 i~f~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~It~~Ef~~~l~~~~~~------~~~~~~~~~~~~~~~~~f~~~ 155 (206)
.+++.|..++..+|.. .++..+|+.+..++.-++|.++|...+..-=+. +-+...+..+..++ +.+
T Consensus 205 f~~e~f~~~l~klcpR----~eie~iF~ki~~~~kpylT~~ql~dfln~~QrDpRLNeilfp~~~~~r~~~li----eky 276 (1189)
T KOG1265|consen 205 FTLEKFYRLLNKLCPR----PEIEEIFRKISGKKKPYLTKEQLVDFLNKKQRDPRLNEILFPPADPRRIQSLI----EKY 276 (1189)
T ss_pred ccHHHHHHHHHhcCCc----hhHHHHHHHhccCCCccccHHHHHHHHhhhccCcchhhhhcCCCCHHHHHHHH----HHc
Confidence 5788888888888763 248899999998888999999999997642111 23556667776666 677
Q ss_pred CCCC----CCcccHHHHHHHHhh
Q 028605 156 DTKH----DGKIDKEEWRNLVLR 174 (206)
Q Consensus 156 d~d~----~g~Is~~eF~~~l~~ 174 (206)
..|+ .|.++.+-|++.+..
T Consensus 277 Ep~~~~a~~gqms~dgf~ryl~g 299 (1189)
T KOG1265|consen 277 EPNSDNAEKGQMSTDGFVRYLMG 299 (1189)
T ss_pred CCchhhhhccccchhhhHHHhhC
Confidence 6654 789999999999987
No 125
>KOG0035 consensus Ca2+-binding actin-bundling protein (actinin), alpha chain (EF-Hand protein superfamily) [Cytoskeleton]
Probab=78.28 E-value=6.9 Score=36.94 Aligned_cols=72 Identities=13% Similarity=0.110 Sum_probs=55.5
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHHHHHHHHHHhcCCCCCH-HHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhhChh
Q 028605 102 DKIEFSFQLYDLKQQGFIERQEVKQMVVATLTESGMNLSD-DVIESIIDKTFEEADTKHDGKIDKEEWRNLVLRHPS 177 (206)
Q Consensus 102 ~~~~~~F~~~D~~~~g~It~~Ef~~~l~~~~~~~~~~~~~-~~~~~~~~~~f~~~d~d~~g~Is~~eF~~~l~~~~~ 177 (206)
.+++.+|+.+++...|.++.+++...+..+ |....+ ++...-+.++....|.+.-|++++.+|...|.+..+
T Consensus 747 ~ElrAle~~~~~~d~~aa~~e~~~~~Lmsl----g~~~e~ee~~~~e~~~lvn~~n~l~~~qv~~~e~~ddl~R~~e 819 (890)
T KOG0035|consen 747 DELRALENEQDKIDGGAASPEELLRCLMSL----GYNTEEEEQGIAEWFRLVNKKNPLIQGQVQLLEFEDDLEREYE 819 (890)
T ss_pred HHHHHHHhHHHHhhcccCCHHHHHHHHHhc----CcccchhHHHHHHHHHHHhccCcccccceeHHHHHhHhhhhhh
Confidence 457889999999999999999999986543 666554 455555556667778777899999999988866443
No 126
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=77.18 E-value=2.9 Score=26.56 Aligned_cols=29 Identities=7% Similarity=0.329 Sum_probs=25.1
Q ss_pred ChHHHHHHHHhhhCCCCCCcccHHHHHHHH
Q 028605 99 PIDDKIEFSFQLYDLKQQGFIERQEVKQMV 128 (206)
Q Consensus 99 ~~~~~~~~~F~~~D~~~~g~It~~Ef~~~l 128 (206)
.+.+.+..+|+.+ .++.++||.+||++.+
T Consensus 3 ~s~eqv~~aFr~l-A~~KpyVT~~dLr~~l 31 (69)
T PF08726_consen 3 DSAEQVEEAFRAL-AGGKPYVTEEDLRRSL 31 (69)
T ss_dssp STCHHHHHHHHHH-CTSSSCEEHHHHHHHS
T ss_pred CCHHHHHHHHHHH-HcCCCcccHHHHHHHc
Confidence 4567899999999 8888999999999974
No 127
>TIGR01848 PHA_reg_PhaR polyhydroxyalkanoate synthesis repressor PhaR. Poly-B-hydroxyalkanoates are lipidlike carbon/energy storage polymers found in granular inclusions. PhaR is a regulatory protein found in general near other proteins associated with polyhydroxyalkanoate (PHA) granule biosynthesis and utilization. It is found to be a DNA-binding homotetramer that is also capable of binding short chain hydroxyalkanoic acids and PHA granules. PhaR may regulate the expression of itself, of the phasins that coat granules, and of enzymes that direct carbon flux into polymers stored in granules.
Probab=75.22 E-value=20 Score=24.82 Aligned_cols=70 Identities=14% Similarity=0.324 Sum_probs=43.2
Q ss_pred hhhCCCCCCcccHHHHHHHHHHHH------HhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhhChhHHhhh
Q 028605 109 QLYDLKQQGFIERQEVKQMVVATL------TESGMNLSDDVIESIIDKTFEEADTKHDGKIDKEEWRNLVLRHPSLLKNM 182 (206)
Q Consensus 109 ~~~D~~~~g~It~~Ef~~~l~~~~------~~~~~~~~~~~~~~~~~~~f~~~d~d~~g~Is~~eF~~~l~~~~~~~~~~ 182 (206)
++||+..+.+||.+++..++..=. ...|.+++. .++.++..+-...+...++..=..++++-.-..++.+
T Consensus 10 RLYDT~tS~YITLedi~~lV~~g~~f~V~DakTgeDiT~----~iL~QII~E~E~~g~~~lp~~~L~qlIr~yg~~~q~~ 85 (107)
T TIGR01848 10 RLYDTETSSYVTLEDIRDLVREGREFQVVDSKSGDDLTR----SILLQIIAEEESGGEPVLSTDFLTQIIRFYGGSMQSF 85 (107)
T ss_pred cccCCCccceeeHHHHHHHHHCCCeEEEEECCCCchhHH----HHHHHHHHHHHhCCCCCCCHHHHHHHHHHhChhHHHH
Confidence 578999999999999999864200 013344444 3344444555556666777776777776655544444
No 128
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=73.69 E-value=11 Score=34.04 Aligned_cols=35 Identities=26% Similarity=0.418 Sum_probs=29.9
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHhhChhHH
Q 028605 145 ESIIDKTFEEADTKHDGKIDKEEWRNLVLRHPSLL 179 (206)
Q Consensus 145 ~~~~~~~f~~~d~d~~g~Is~~eF~~~l~~~~~~~ 179 (206)
...+..+|..+|.|+||.++-.|+...+..-|...
T Consensus 314 ~~Fl~~~f~~~D~d~Dg~L~p~El~~LF~~~P~~p 348 (625)
T KOG1707|consen 314 YRFLVDVFEKFDRDNDGALSPEELKDLFSTAPGSP 348 (625)
T ss_pred HHHHHHHHHhccCCCCCCcCHHHHHHHhhhCCCCC
Confidence 34567899999999999999999999998877654
No 129
>KOG3555 consensus Ca2+-binding proteoglycan Testican [General function prediction only]
Probab=71.73 E-value=5.6 Score=33.35 Aligned_cols=53 Identities=23% Similarity=0.192 Sum_probs=45.0
Q ss_pred HHhHHcCCCCCcccHHHHHHHHHhhCCCCChHHHHHHHHhhhCCCCCCcccHHHHHHH
Q 028605 70 VFDLFDTKHNGILDFEEFARALSIFHPNSPIDDKIEFSFQLYDLKQQGFIERQEVKQM 127 (206)
Q Consensus 70 lf~~~d~~~~g~i~f~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~It~~Ef~~~ 127 (206)
||+..|.|.++.++-.|...+.. ...+.=++-.|...|...+|.|+-.|.-.-
T Consensus 255 MFnklD~N~Dl~Ld~sEl~~I~l-----dknE~CikpFfnsCD~~kDg~iS~~EWC~C 307 (434)
T KOG3555|consen 255 MFNKLDTNYDLLLDQSELRAIEL-----DKNEACIKPFFNSCDTYKDGSISTNEWCYC 307 (434)
T ss_pred hhhccccccccccCHHHhhhhhc-----cCchhHHHHHHhhhcccccCccccchhhhh
Confidence 99999999999999999777653 245555888999999999999999998764
No 130
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=71.20 E-value=35 Score=24.37 Aligned_cols=93 Identities=11% Similarity=0.143 Sum_probs=55.6
Q ss_pred cccHHHHHHHHHhh-----C-CCCChHHHHHHHHhhhCCCC--CCcccHHHHHHHHHHHHHh----cCCCCC------HH
Q 028605 81 ILDFEEFARALSIF-----H-PNSPIDDKIEFSFQLYDLKQ--QGFIERQEVKQMVVATLTE----SGMNLS------DD 142 (206)
Q Consensus 81 ~i~f~ef~~~~~~~-----~-~~~~~~~~~~~~F~~~D~~~--~g~It~~Ef~~~l~~~~~~----~~~~~~------~~ 142 (206)
.|-|.-|..++..- + -..-.-..+..+|+.+.-+. +..|+..|+..++..++.. .+.... +.
T Consensus 14 ~IrfsaYRtA~KLR~lQk~~~l~lv~l~~v~~~f~~~~l~~~~d~~l~v~~l~~~L~~iy~~l~~~~p~~~~i~~~~v~~ 93 (127)
T PF09068_consen 14 NIRFSAYRTAMKLRFLQKRLCLDLVDLSNVIEAFREHGLNQSNDSSLSVSQLETLLSSIYEFLNKRLPTLHQIPSRPVDL 93 (127)
T ss_dssp T-SSHHHHHHHHHHHHHHHTTGGG--HHHHHHHHHHTT---T-TSEEEHHHHHHHHHHHHHHHHHHSTTS--HH-----H
T ss_pred hHHHHHhHHHHHHHHHHHHHhheeeeHHHHHHHHHHcCCCcccCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCchhHHH
Confidence 46677777665321 1 11123444667777775444 4679999999999888732 222111 24
Q ss_pred HHHHHHHHHHHHhCCCCCCcccHHHHHHHHh
Q 028605 143 VIESIIDKTFEEADTKHDGKIDKEEWRNLVL 173 (206)
Q Consensus 143 ~~~~~~~~~f~~~d~d~~g~Is~~eF~~~l~ 173 (206)
.++-.+..++..+|+++.|.|+.-.|.-.+.
T Consensus 94 a~~L~ln~Ll~vyD~~rtG~I~vls~KvaL~ 124 (127)
T PF09068_consen 94 AVDLLLNWLLNVYDSQRTGKIRVLSFKVALI 124 (127)
T ss_dssp HHHHHHHHHHHHH-TT--SEEEHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCCeeehhHHHHHHH
Confidence 5566677888899999999999999987664
No 131
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=70.18 E-value=6 Score=36.73 Aligned_cols=60 Identities=17% Similarity=0.272 Sum_probs=45.6
Q ss_pred HHHHHhHHcCCCCCcccHHHHHHHHHhhCCCCChHHHHHHHHhhhCCCCCCcccHHHHHHHHH
Q 028605 67 INKVFDLFDTKHNGILDFEEFARALSIFHPNSPIDDKIEFSFQLYDLKQQGFIERQEVKQMVV 129 (206)
Q Consensus 67 i~~lf~~~d~~~~g~i~f~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~It~~Ef~~~l~ 129 (206)
.+.+|+..|+..+|.++=.+=...+.. + +.+...+-.++.+-|.|+||.++.+||.-++.
T Consensus 197 Y~QlFNa~DktrsG~Lsg~qaR~aL~q-S--~Lpq~~LA~IW~LsDvd~DGkL~~dEfilam~ 256 (1118)
T KOG1029|consen 197 YRQLFNALDKTRSGYLSGQQARSALGQ-S--GLPQNQLAHIWTLSDVDGDGKLSADEFILAMH 256 (1118)
T ss_pred HHHHhhhcccccccccccHHHHHHHHh-c--CCchhhHhhheeeeccCCCCcccHHHHHHHHH
Confidence 344999999999998877665544422 2 24555677899999999999999999998754
No 132
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=69.08 E-value=19 Score=26.59 Aligned_cols=59 Identities=12% Similarity=0.181 Sum_probs=37.1
Q ss_pred hCCCCCCcccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhh
Q 028605 111 YDLKQQGFIERQEVKQMVVATLTESGMNLSDDVIESIIDKTFEEADTKHDGKIDKEEWRNLVLR 174 (206)
Q Consensus 111 ~D~~~~g~It~~Ef~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~d~~g~Is~~eF~~~l~~ 174 (206)
|-..+...++-..|..+++.+ .-.+..++...++- +|..+-..+...|+|++|..+|..
T Consensus 11 fG~~~~~~m~~~~F~Kl~kD~-~i~d~k~t~tdvDi----iF~Kvk~k~~~~I~f~~F~~aL~~ 69 (154)
T PF05517_consen 11 FGKKNGTEMDSKNFAKLCKDC-GIIDKKLTSTDVDI----IFSKVKAKGARKITFEQFLEALAE 69 (154)
T ss_dssp SSTSTSSEEEHHHHHHHHHHT-SS--SSS-HHHHHH----HHHHHT-SS-SEEEHHHHHHHHHH
T ss_pred hcCCccccccHHHHHHHHHHc-CCCCCCCchHHHHH----HHHHhhcCCCcccCHHHHHHHHHH
Confidence 345556679999999987654 22234466655544 446655555667999999999865
No 133
>KOG4004 consensus Matricellular protein Osteonectin/SPARC/BM-40 [Extracellular structures]
Probab=65.74 E-value=3.6 Score=31.74 Aligned_cols=57 Identities=21% Similarity=0.427 Sum_probs=40.0
Q ss_pred HHHhhhCCC-CCCcccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHH
Q 028605 106 FSFQLYDLK-QQGFIERQEVKQMVVATLTESGMNLSDDVIESIIDKTFEEADTKHDGKIDKEEWRNLV 172 (206)
Q Consensus 106 ~~F~~~D~~-~~g~It~~Ef~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~d~~g~Is~~eF~~~l 172 (206)
+-|-.+|.. .||+++--|+.-+- .+-+. .+..+..+|+.+|.|+||+|+.+||...+
T Consensus 191 wqf~qld~~p~d~~~sh~el~pl~-------ap~ip---me~c~~~f~e~cd~~nd~~ial~ew~~c~ 248 (259)
T KOG4004|consen 191 WQFGQLDQHPIDGYLSHTELAPLR-------APLIP---MEHCTTRFFETCDLDNDKYIALDEWAGCF 248 (259)
T ss_pred eeeccccCCCcccccccccccccc-------CCccc---HHhhchhhhhcccCCCCCceeHHHhhccc
Confidence 345556543 48899888877641 12222 34567788899999999999999997654
No 134
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=64.87 E-value=16 Score=32.87 Aligned_cols=64 Identities=16% Similarity=0.338 Sum_probs=50.1
Q ss_pred HHHHHHhhhCCCCCCcccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhh
Q 028605 103 KIEFSFQLYDLKQQGFIERQEVKQMVVATLTESGMNLSDDVIESIIDKTFEEADTKHDGKIDKEEWRNLVLR 174 (206)
Q Consensus 103 ~~~~~F~~~D~~~~g~It~~Ef~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~d~~g~Is~~eF~~~l~~ 174 (206)
..+.-|..+|.++.|+++...+..+++.. +...+++...+.+ ++.+.+-+|.+...||.+.+..
T Consensus 594 ~~~~rf~~lD~~k~~~~~i~~v~~vlk~~----~~~~d~~~~~~~l----~ea~~~~~g~v~l~e~~q~~s~ 657 (680)
T KOG0042|consen 594 RRKTRFAFLDADKKAYQAIADVLKVLKSE----NVGWDEDRLHEEL----QEADENLNGFVELREFLQLMSA 657 (680)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHHHHHh----cCCCCHHHHHHHH----HHHHHhhcceeeHHHHHHHHHH
Confidence 34567899999999999999999987654 4566666655555 6777777899999999887754
No 135
>PF00427 PBS_linker_poly: Phycobilisome Linker polypeptide; InterPro: IPR001297 Phycobilisomes (PBSs) are the major light-harvesting systems in cyanobacteria and red algae. PBS is a supercomplex that is composed of a core complex and multiple peripheral rod complexes. Typically, the core consists of two or five cylinders lying on the membrane with, in most cases, multiple rods radiating from the core to form a hemidiscoidal structure. The building units of the core cylinders and the peripheral rods are trimeric and hexameric discs, in which a monomer consists of a pair of related phycobiliproteins (PBPs), such as phycorerythrins, phycoerythrocyanins, phycocyanins, and allophycocyanins. The discs are connected to each other via specific linker polypeptides to form peripheral rods or core cylinders. Linker polypeptides share a conserved domain of ~180 residues, which can be present in one or multiple copies [, , , , ].; GO: 0015979 photosynthesis, 0030089 phycobilisome; PDB: 2L8V_A 2KY4_A 3OSJ_D 2L06_A 3NPH_B 2L3W_A 3PRU_C 3OHW_A.
Probab=63.90 E-value=19 Score=25.93 Aligned_cols=24 Identities=17% Similarity=0.266 Sum_probs=19.7
Q ss_pred CCcccHHHHHHHHhhChhHHhhhh
Q 028605 160 DGKIDKEEWRNLVLRHPSLLKNMT 183 (206)
Q Consensus 160 ~g~Is~~eF~~~l~~~~~~~~~~~ 183 (206)
+|.||..||++.|.+...+.+.+-
T Consensus 42 ng~IsVreFVr~La~S~~yr~~f~ 65 (131)
T PF00427_consen 42 NGQISVREFVRALAKSELYRKRFF 65 (131)
T ss_dssp TTSS-HHHHHHHHHTSHHHHHHHT
T ss_pred cCCCcHHHHHHHHHcCHHHHHHHc
Confidence 688999999999999888877663
No 136
>KOG2557 consensus Uncharacterized conserved protein, contains TLDc domain [Function unknown]
Probab=62.64 E-value=99 Score=26.46 Aligned_cols=54 Identities=20% Similarity=0.397 Sum_probs=43.9
Q ss_pred CCcccHHHHHHHHHhhCCCCChHHHHHHHHhhhCCCCCCcccHHHHHHHHHHHHH
Q 028605 79 NGILDFEEFARALSIFHPNSPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLT 133 (206)
Q Consensus 79 ~g~i~f~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~It~~Ef~~~l~~~~~ 133 (206)
+..++++.+......... +..++..+.++...|.+++|......+.+.+...++
T Consensus 72 ~~~~~l~k~~~~~~~~~~-gt~dq~a~mL~~~~~~sgn~~~~~~q~eQ~~~~vlk 125 (427)
T KOG2557|consen 72 DDKMTLEKLVIAKATYEK-GTDDQIAEMLYQTLDVNGNGVLSRSQLEQFLVVVLK 125 (427)
T ss_pred CccchHHHHhhHHhhhcc-CcccHHHHHHHHHHhhccccccchhHHHHHHHHHhh
Confidence 346889998877766555 577888999999999999999999999998765554
No 137
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=62.14 E-value=45 Score=22.31 Aligned_cols=83 Identities=11% Similarity=0.091 Sum_probs=51.6
Q ss_pred cCCCHHHHHHHHHHHHhh-ccCCcCccHHHHHHhHHcCCCCCcccHHHHHHHHHhhCCCCChHHHHHHHHhhhCCCCCCc
Q 028605 40 TVFSVSEIEALYELFKKI-SSAVIDDGLINKVFDLFDTKHNGILDFEEFARALSIFHPNSPIDDKIEFSFQLYDLKQQGF 118 (206)
Q Consensus 40 ~~~s~~e~~~l~~~F~~~-d~~~~~~g~i~~lf~~~d~~~~g~i~f~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~ 118 (206)
-.+++.|...+...+... .-+ ......+...+........++.+|...+...+.......-+..++++. ..||.
T Consensus 14 G~v~~~E~~~i~~~l~~~~~l~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~L~~vA--~ADG~ 88 (104)
T cd07313 14 GEYDEEERAAIDRLLAERFGLD---AEEAAELLAEAEALEEEAPDLYEFTSLIKEHFDYEERLELVEALWEVA--YADGE 88 (104)
T ss_pred CCCCHHHHHHHHHHHHHHhCcC---HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCHHHHHHHHHHHHHHH--HhcCC
Confidence 347888888888888774 432 445566666665554556778888888766542222333355566663 34567
Q ss_pred ccHHHHHHH
Q 028605 119 IERQEVKQM 127 (206)
Q Consensus 119 It~~Ef~~~ 127 (206)
++..|-.-+
T Consensus 89 ~~~~E~~~l 97 (104)
T cd07313 89 LDEYEEHLI 97 (104)
T ss_pred CCHHHHHHH
Confidence 777776654
No 138
>PF08976 DUF1880: Domain of unknown function (DUF1880); InterPro: IPR015070 This entry represents EF-hand calcium-binding domain-containing protein 6 that negatively regulates the androgen receptor by recruiting histone deacetylase complex, and protein DJ-1 antagonises this inhibition by abrogation of this complex [].; PDB: 1WLZ_C.
Probab=61.27 E-value=7.8 Score=27.20 Aligned_cols=32 Identities=16% Similarity=0.348 Sum_probs=20.3
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhh
Q 028605 139 LSDDVIESIIDKTFEEADTKHDGKIDKEEWRNLVLR 174 (206)
Q Consensus 139 ~~~~~~~~~~~~~f~~~d~d~~g~Is~~eF~~~l~~ 174 (206)
+++++++.+. .++-.|..|+|.|.||..-+..
T Consensus 4 LtDeQFdrLW----~e~Pvn~~GrLkY~eFL~kfs~ 35 (118)
T PF08976_consen 4 LTDEQFDRLW----NEMPVNAKGRLKYQEFLSKFSS 35 (118)
T ss_dssp --HHHHHHHH----TTS-B-TTS-EEHHHHHHHT--
T ss_pred ccHHHhhhhh----hhCcCCccCCEeHHHHHHHccc
Confidence 5667766665 6888899999999999877654
No 139
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=59.93 E-value=25 Score=25.09 Aligned_cols=26 Identities=19% Similarity=0.429 Sum_probs=19.9
Q ss_pred HHHHHhhhCCCCCCcccHHHHHHHHH
Q 028605 104 IEFSFQLYDLKQQGFIERQEVKQMVV 129 (206)
Q Consensus 104 ~~~~F~~~D~~~~g~It~~Ef~~~l~ 129 (206)
+.++...||.+++|.|+.-+|+.++.
T Consensus 99 ln~Ll~vyD~~rtG~I~vls~KvaL~ 124 (127)
T PF09068_consen 99 LNWLLNVYDSQRTGKIRVLSFKVALI 124 (127)
T ss_dssp HHHHHHHH-TT--SEEEHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCeeehhHHHHHHH
Confidence 57789999999999999999988763
No 140
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=59.91 E-value=11 Score=23.96 Aligned_cols=48 Identities=21% Similarity=0.242 Sum_probs=34.8
Q ss_pred CcccHHHHHHHHHhhCCCCChHHHHHHHHhhhCCCCCCcccHHHHHHHHHHH
Q 028605 80 GILDFEEFARALSIFHPNSPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVAT 131 (206)
Q Consensus 80 g~i~f~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~It~~Ef~~~l~~~ 131 (206)
-.+.|......+....+ ..+...+...|+.=..+.|+++||.+.++.+
T Consensus 7 p~~~F~~L~~~l~~~l~----~~~~~~l~~~Y~~~k~~kIsR~~fvr~lR~I 54 (70)
T PF12174_consen 7 PWMPFPMLFSALSKHLP----PSKMDLLQKHYEEFKKKKISREEFVRKLRQI 54 (70)
T ss_pred CcccHHHHHHHHHHHCC----HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 35777777777665543 3346666777766678899999999998776
No 141
>PF05872 DUF853: Bacterial protein of unknown function (DUF853); InterPro: IPR008571 Members of this family have a P-loop containing nucleotide triphosphate hydrolases fold. This family is restricted to bacterial proteins, none of which have currently been characterised.
Probab=58.82 E-value=46 Score=29.42 Aligned_cols=116 Identities=22% Similarity=0.338 Sum_probs=67.2
Q ss_pred CccHHHHHHhHHcCCCCCcccHHHHHHHHHhhCCCCChHHHHHHHHhhhCCCCCCcccHHHHHHHHHHHHHhc--C----
Q 028605 63 DDGLINKVFDLFDTKHNGILDFEEFARALSIFHPNSPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLTES--G---- 136 (206)
Q Consensus 63 ~~g~i~~lf~~~d~~~~g~i~f~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~It~~Ef~~~l~~~~~~~--~---- 136 (206)
..|.+..+|...|.++-=.++..++..++..+..+ ..++. ..-|.|+...+-.++++++..- |
T Consensus 126 Q~gvL~i~F~~ADd~gLlLlDLkDLra~l~~v~e~---~~e~~--------~~yG~is~aS~gaI~R~ll~LE~qG~d~F 194 (502)
T PF05872_consen 126 QEGVLNIVFRIADDEGLLLLDLKDLRAMLQYVSEN---AKELS--------AEYGNISSASIGAIQRALLVLEQQGGDQF 194 (502)
T ss_pred HHHHHHHHHHHhccCCCccccHHHHHHHHHHHHhh---HHHHH--------HHcCCccHHHHHHHHHHHHHHHHcchHhh
Confidence 45566667777777666667777777777655321 11111 1235566666666665554311 1
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhhChhHHhhhhhhhhhhhhhccC
Q 028605 137 MNLSDDVIESIIDKTFEEADTKHDGKIDKEEWRNLVLRHPSLLKNMTLQYLKDITTTFP 195 (206)
Q Consensus 137 ~~~~~~~~~~~~~~~f~~~d~d~~g~Is~~eF~~~l~~~~~~~~~~~~~~~~~~~~~~~ 195 (206)
.....-++.+++ ..|.|+.|.|+.-+.-..+. .|.++..|-+-.+.|+.+.+|
T Consensus 195 FGEPaldi~Dl~-----r~~~~GrG~IniL~a~~l~~-~P~LysTFLLwLLsELfe~LP 247 (502)
T PF05872_consen 195 FGEPALDIEDLM-----RTDADGRGVINILAADKLMN-SPKLYSTFLLWLLSELFEQLP 247 (502)
T ss_pred CCCccCCHHHHh-----ccCCCCCEEEEEEEhHhhhh-CcHHHHHHHHHHHHHHHHhCc
Confidence 000111122222 46778889998877766665 787777777777777777665
No 142
>PLN02230 phosphoinositide phospholipase C 4
Probab=57.00 E-value=69 Score=29.29 Aligned_cols=74 Identities=8% Similarity=0.156 Sum_probs=48.6
Q ss_pred ChHHHHHHHHhhhCCCCCCcccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhC---CCCCCcccHHHHHHHHhh
Q 028605 99 PIDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLTESGMNLSDDVIESIIDKTFEEAD---TKHDGKIDKEEWRNLVLR 174 (206)
Q Consensus 99 ~~~~~~~~~F~~~D~~~~g~It~~Ef~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d---~d~~g~Is~~eF~~~l~~ 174 (206)
....++..+|..|..++ +.++.++|..+|..- +......+.+.++.++..+..... .-+.+.++.+.|..+|..
T Consensus 26 ~p~~ei~~lf~~~s~~~-~~mt~~~l~~FL~~~-Q~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~s 102 (598)
T PLN02230 26 GPVADVRDLFEKYADGD-AHMSPEQLQKLMAEE-GGGEGETSLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLFS 102 (598)
T ss_pred CCcHHHHHHHHHHhCCC-CccCHHHHHHHHHHh-CCCcccCCHHHHHHHHHHHHhhccccccccccccCHHHHHHHHcC
Confidence 34567999999995444 799999999997542 111113355666666665543332 223457999999998865
No 143
>PF04876 Tenui_NCP: Tenuivirus major non-capsid protein; InterPro: IPR006960 This entry contains the tenuivirus major non-capsid protein. Proteins accumulate in large amounts in tenuivirus infected cells. They are found in the inclusion bodies that are formed after infection [].
Probab=56.59 E-value=78 Score=23.35 Aligned_cols=48 Identities=23% Similarity=0.435 Sum_probs=33.3
Q ss_pred CCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhhChhHHhhhhhhhh
Q 028605 137 MNLSDDVIESIIDKTFEEADTKHDGKIDKEEWRNLVLRHPSLLKNMTLQYL 187 (206)
Q Consensus 137 ~~~~~~~~~~~~~~~f~~~d~d~~g~Is~~eF~~~l~~~~~~~~~~~~~~~ 187 (206)
..++.+++..++..+.+.+..++ +.-+++.....+.|.+...+..+++
T Consensus 126 n~MSk~Qik~L~~~Ii~~akae~---~dtE~Ye~vwkKmPaY~~nil~~~l 173 (175)
T PF04876_consen 126 NRMSKDQIKTLCEQIIEMAKAES---SDTEHYEKVWKKMPAYFSNILQPYL 173 (175)
T ss_pred chhhHHHHHHHHHHHHHHHhccC---CchHHHHHHHHHhhHHHHHHHHHHh
Confidence 45677777777777767765543 3457788888888888777766654
No 144
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=55.82 E-value=34 Score=24.87 Aligned_cols=68 Identities=15% Similarity=0.124 Sum_probs=35.1
Q ss_pred CcccHHHHHHHHHhhCCCCChHHHHHHHHhhhCCCC-------CCcccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH
Q 028605 80 GILDFEEFARALSIFHPNSPIDDKIEFSFQLYDLKQ-------QGFIERQEVKQMVVATLTESGMNLSDDVIESIIDKTF 152 (206)
Q Consensus 80 g~i~f~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~-------~g~It~~Ef~~~l~~~~~~~~~~~~~~~~~~~~~~~f 152 (206)
+.++.+||..+-.-.. ....+++.+...|..+| .+.|+++.|+.+|+.. +..++.+ ++..++|
T Consensus 6 ~~lsp~eF~qLq~y~e---ys~kklkdvl~eF~~~g~~~~~~~~~~Id~egF~~Fm~~y---Le~d~P~----~lc~hLF 75 (138)
T PF14513_consen 6 VSLSPEEFAQLQKYSE---YSTKKLKDVLKEFHGDGSLAKYNPEEPIDYEGFKLFMKTY---LEVDLPE----DLCQHLF 75 (138)
T ss_dssp S-S-HHHHHHHHHHHH---H----HHHHHHHH-HTSGGGGGEETTEE-HHHHHHHHHHH---TT-S--H----HHHHHHH
T ss_pred eccCHHHHHHHHHHHH---HHHHHHHHHHHHHhcCCcccccCCCCCcCHHHHHHHHHHH---HcCCCCH----HHHHHHH
Confidence 4677888877643322 12234666666664433 5689999999998765 3334444 4455566
Q ss_pred HHhCC
Q 028605 153 EEADT 157 (206)
Q Consensus 153 ~~~d~ 157 (206)
..|-.
T Consensus 76 ~sF~~ 80 (138)
T PF14513_consen 76 LSFQK 80 (138)
T ss_dssp HHS--
T ss_pred HHHhC
Confidence 66654
No 145
>COG5394 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=54.24 E-value=29 Score=25.94 Aligned_cols=21 Identities=24% Similarity=0.518 Sum_probs=16.5
Q ss_pred hhhCCCCCCcccHHHHHHHHH
Q 028605 109 QLYDLKQQGFIERQEVKQMVV 129 (206)
Q Consensus 109 ~~~D~~~~g~It~~Ef~~~l~ 129 (206)
++||+.-+-+||.+++..+++
T Consensus 19 RLYnT~TSTYVTL~dla~mVk 39 (193)
T COG5394 19 RLYNTGTSTYVTLEDLAQMVK 39 (193)
T ss_pred hhcccCCceeeeHHHHHHHHh
Confidence 456777788899999988864
No 146
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=50.01 E-value=42 Score=30.39 Aligned_cols=73 Identities=15% Similarity=0.165 Sum_probs=45.6
Q ss_pred CCCHHHHHHHHHHHHhhccCCcCccHHHHHHhHHcCCCCCcccHHHHHHHHHhhCCCCChHHHHHHHHhhhCCCCCCccc
Q 028605 41 VFSVSEIEALYELFKKISSAVIDDGLINKVFDLFDTKHNGILDFEEFARALSIFHPNSPIDDKIEFSFQLYDLKQQGFIE 120 (206)
Q Consensus 41 ~~s~~e~~~l~~~F~~~d~~~~~~g~i~~lf~~~d~~~~g~i~f~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~It 120 (206)
.++++++...+.+|..+|.+ +.|++. .......+..... ...+..+....+-.|.+-+|.+.
T Consensus 586 ~~~~~~~~~~~~rf~~lD~~--k~~~~~---------------i~~v~~vlk~~~~-~~d~~~~~~~l~ea~~~~~g~v~ 647 (680)
T KOG0042|consen 586 KLTPEDFLRRKTRFAFLDAD--KKAYQA---------------IADVLKVLKSENV-GWDEDRLHEELQEADENLNGFVE 647 (680)
T ss_pred ccCHHHHHHHHHHHHhhcch--HHHHHH---------------HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhhcceee
Confidence 47888888888888888876 555443 3333333333221 24555566666666666677777
Q ss_pred HHHHHHHHHHH
Q 028605 121 RQEVKQMVVAT 131 (206)
Q Consensus 121 ~~Ef~~~l~~~ 131 (206)
.+||.+++..+
T Consensus 648 l~e~~q~~s~~ 658 (680)
T KOG0042|consen 648 LREFLQLMSAI 658 (680)
T ss_pred HHHHHHHHHHH
Confidence 77777776554
No 147
>PF08414 NADPH_Ox: Respiratory burst NADPH oxidase; InterPro: IPR013623 This domain is found in plant proteins such as respiratory burst NADPH oxidase proteins which produce reactive oxygen species as a defence mechanism. It tends to occur to the N terminus of an EF-hand (IPR002048 from INTERPRO), which suggests a direct regulatory effect of Ca2+ on the activity of the NADPH oxidase in plants []. ; GO: 0004601 peroxidase activity, 0050664 oxidoreductase activity, acting on NADH or NADPH, oxygen as acceptor, 0055114 oxidation-reduction process; PDB: 3A8R_A.
Probab=47.75 E-value=88 Score=21.36 Aligned_cols=61 Identities=20% Similarity=0.345 Sum_probs=33.4
Q ss_pred HHHHHhhhCCCCCCcccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhh
Q 028605 104 IEFSFQLYDLKQQGFIERQEVKQMVVATLTESGMNLSDDVIESIIDKTFEEADTKHDGKIDKEEWRNLVLR 174 (206)
Q Consensus 104 ~~~~F~~~D~~~~g~It~~Ef~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~d~~g~Is~~eF~~~l~~ 174 (206)
++.-|..+.. +|+++++.|-..+ |..-+.+-..+++..+-+.-... .+.|+.+|+..+..+
T Consensus 32 VE~RFd~La~--dG~L~rs~Fg~CI-------GM~dSkeFA~eLFdALaRrr~i~-~~~I~k~eL~efW~q 92 (100)
T PF08414_consen 32 VEKRFDKLAK--DGLLPRSDFGECI-------GMKDSKEFAGELFDALARRRGIK-GDSITKDELKEFWEQ 92 (100)
T ss_dssp HHHHHHHH-B--TTBEEGGGHHHHH-------T--S-HHHHHHHHHHHHHHTT---SSEE-HHHHHHHHHH
T ss_pred HHHHHHHhCc--CCcccHHHHHHhc-------CCcccHHHHHHHHHHHHHhcCCc-cCCcCHHHHHHHHHH
Confidence 5555666655 7788888888764 44455555555554444444333 456888877665544
No 148
>PLN02952 phosphoinositide phospholipase C
Probab=47.70 E-value=1.9e+02 Score=26.54 Aligned_cols=86 Identities=9% Similarity=0.094 Sum_probs=57.8
Q ss_pred CCCHHHHHHHHHHHHhhccCCcCccHHHHHHhHHcCCCCCcccHHHHHHHHHhhCCCC-ChHHHHHHHHhhh-------C
Q 028605 41 VFSVSEIEALYELFKKISSAVIDDGLINKVFDLFDTKHNGILDFEEFARALSIFHPNS-PIDDKIEFSFQLY-------D 112 (206)
Q Consensus 41 ~~s~~e~~~l~~~F~~~d~~~~~~g~i~~lf~~~d~~~~g~i~f~ef~~~~~~~~~~~-~~~~~~~~~F~~~-------D 112 (206)
.++-++...+.+.|..-... ....|..+|..+..++ +.++.++|..++....... .+.+.+..++..+ .
T Consensus 16 ~l~f~~f~~f~~~~k~~~~~--~r~ei~~lf~~~~~~~-~~mt~~~l~~FL~~~Q~e~~~~~~~~~~i~~~~~~~~~~~~ 92 (599)
T PLN02952 16 SYNYKMFNLFNRKFKITEAE--PPDDVKDVFCKFSVGG-GHMGADQLRRFLVLHQDELDCTLAEAQRIVEEVINRRHHVT 92 (599)
T ss_pred CcCHHHHHHHHHHhccccCC--ChHHHHHHHHHHhCCC-CccCHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHhhccccc
Confidence 46667777777777654433 5678999999986544 6799999999998776532 3344455554432 1
Q ss_pred CCCCCcccHHHHHHHHH
Q 028605 113 LKQQGFIERQEVKQMVV 129 (206)
Q Consensus 113 ~~~~g~It~~Ef~~~l~ 129 (206)
..+.+.++.+.|...|.
T Consensus 93 ~~~~~~l~~~~F~~~l~ 109 (599)
T PLN02952 93 RYTRHGLNLDDFFHFLL 109 (599)
T ss_pred cccccCcCHHHHHHHHc
Confidence 12335689999999874
No 149
>PLN02223 phosphoinositide phospholipase C
Probab=46.73 E-value=1.4e+02 Score=26.98 Aligned_cols=75 Identities=9% Similarity=-0.038 Sum_probs=53.3
Q ss_pred ChHHHHHHHHhhhCCCCCCcccHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHhCC----CCCCcccHHHHHHHHh
Q 028605 99 PIDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLTESG-MNLSDDVIESIIDKTFEEADT----KHDGKIDKEEWRNLVL 173 (206)
Q Consensus 99 ~~~~~~~~~F~~~D~~~~g~It~~Ef~~~l~~~~~~~~-~~~~~~~~~~~~~~~f~~~d~----d~~g~Is~~eF~~~l~ 173 (206)
...+.++.+|..+ .++.|.++.+.+.+++.-+...-| ...+.++++.++..++..... ...+.++.+.|..+|.
T Consensus 13 ~~p~~v~~~f~~~-~~~~~~m~~~~l~~fl~~l~~~q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~L~ 91 (537)
T PLN02223 13 NQPDLILNFFGNE-FHGYDDDMPELLPRFIELLDTEKDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEFLF 91 (537)
T ss_pred CCcHHHHHHHHHh-hcCCCCCCHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHHhc
Confidence 3456788999998 477889999999998744333333 346677888888777654421 2236799999999997
Q ss_pred h
Q 028605 174 R 174 (206)
Q Consensus 174 ~ 174 (206)
.
T Consensus 92 s 92 (537)
T PLN02223 92 S 92 (537)
T ss_pred C
Confidence 6
No 150
>PF11829 DUF3349: Protein of unknown function (DUF3349); InterPro: IPR021784 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 99 to 124 amino acids in length. ; PDB: 2KVC_A 3OL3_B 3OL4_A 2LKY_A.
Probab=46.66 E-value=76 Score=21.53 Aligned_cols=65 Identities=9% Similarity=0.147 Sum_probs=45.2
Q ss_pred ccHHHHHHHHHhhCCCCChHHHHHHHHhhhCCCCCCcccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 028605 82 LDFEEFARALSIFHPNSPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLTESGMNLSDDVIESIIDK 150 (206)
Q Consensus 82 i~f~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~It~~Ef~~~l~~~~~~~~~~~~~~~~~~~~~~ 150 (206)
|.-.+|..++..+... .+++++..+-..+-.++...++..++..++..+ .+...++++++.+...
T Consensus 20 vP~~Dy~PLlALL~r~-Ltd~ev~~Va~~L~~~~~~~~~~~dI~~~I~~v---t~~~P~~~di~RV~~~ 84 (96)
T PF11829_consen 20 VPPTDYVPLLALLRRR-LTDDEVAEVAAELAARGDPPVDRIDIGVAITRV---TDELPTPEDIERVRAR 84 (96)
T ss_dssp B-HHHHHHHHHHHTTT-S-HHHHHHHHHHHHHHTSS-BSCCHHHHHHHHH---CSS-S-HHHHHHHHHH
T ss_pred CCCCccHHHHHHhccc-CCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHH---HcCCcCHHHHHHHHHH
Confidence 6667888888877775 788888888888866777667888888887544 5667788888777643
No 151
>PF07879 PHB_acc_N: PHB/PHA accumulation regulator DNA-binding domain; InterPro: IPR012909 This domain is found at the N terminus of the polyhydroxyalkanoate (PHA) synthesis regulators. These regulators have been shown to directly bind DNA and PHA []. The invariant nature of this domain compared to the C-terminal IPR007897 from INTERPRO domain(s) suggests that it contains the DNA-binding function.
Probab=43.92 E-value=20 Score=22.33 Aligned_cols=21 Identities=29% Similarity=0.624 Sum_probs=18.7
Q ss_pred hhhCCCCCCcccHHHHHHHHH
Q 028605 109 QLYDLKQQGFIERQEVKQMVV 129 (206)
Q Consensus 109 ~~~D~~~~g~It~~Ef~~~l~ 129 (206)
++||+..+.+||.+++.+++.
T Consensus 10 RLYDT~~s~YiTL~di~~lV~ 30 (64)
T PF07879_consen 10 RLYDTETSSYITLEDIAQLVR 30 (64)
T ss_pred ccccCCCceeEeHHHHHHHHH
Confidence 578999999999999999863
No 152
>PLN02508 magnesium-protoporphyrin IX monomethyl ester [oxidative] cyclase
Probab=43.89 E-value=1.1e+02 Score=25.71 Aligned_cols=16 Identities=19% Similarity=0.339 Sum_probs=7.7
Q ss_pred hCCCCCCcccHHHHHH
Q 028605 111 YDLKQQGFIERQEVKQ 126 (206)
Q Consensus 111 ~D~~~~g~It~~Ef~~ 126 (206)
+-.+=+|.+-+.|+.+
T Consensus 88 ctaEFSGflLYKEl~r 103 (357)
T PLN02508 88 CTAEFSGFLLYKELGR 103 (357)
T ss_pred hhhhcccchHHHHHHH
Confidence 3344455555555544
No 153
>PF04614 Pex19: Pex19 protein family; InterPro: IPR006708 Peroxisome(s) form an intracellular compartment, bounded by a typical lipid bilayer membrane. Peroxisome functions are often specialised by organism and cell type; two widely distributed and well-conserved functions are H2O2-based respiration and fatty acid beta-oxidation. Other functions include ether lipid (plasmalogen) synthesis and cholesterol synthesis in animals, the glyoxylate cycle in germinating seeds ("glyoxysomes"), photorespiration in leaves, glycolysis in trypanosomes ("glycosomes"), and methanol and/or amine oxidation and assimilation in some yeasts. PEX genes encode the machinery ("peroxins") required to assemble the peroxisome. Membrane assembly and maintenance requires three of these (peroxins 3, 16, and 19) and may occur without the import of the matrix (lumen) enzymes. Matrix protein import follows a branched pathway of soluble recycling receptors, with one branch for each class of peroxisome targeting sequence (two are well characterised), and a common trunk for all. At least one of these receptors, Pex5p, enters and exits peroxisomes as it functions. Proliferation of the organelle is regulated by Pex11p. Peroxisome biogenesis is remarkably conserved among eukaryotes. A group of fatal, inherited neuropathologies are recognised as peroxisome biogenesis diseases. ; GO: 0005777 peroxisome; PDB: 2WL8_B 2W85_B.
Probab=43.28 E-value=5.6 Score=31.92 Aligned_cols=56 Identities=11% Similarity=0.292 Sum_probs=20.6
Q ss_pred HHHHHHHHHHhCCCC----CCcccHHHHHHHHhhChhHHhhhhhhhhhhhhhccCcceecc
Q 028605 145 ESIIDKTFEEADTKH----DGKIDKEEWRNLVLRHPSLLKNMTLQYLKDITTTFPSFVFHS 201 (206)
Q Consensus 145 ~~~~~~~f~~~d~d~----~g~Is~~eF~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (206)
++.+..+|..+...+ .|.=.+..++.-+...= +-+=+.++-+++|...||.||..-
T Consensus 100 dd~l~~ll~~m~~~~~~~~~~~~~~~~~l~~mm~qL-~SKevLYePmKel~~kyP~wL~~n 159 (248)
T PF04614_consen 100 DDMLAQLLKQMGGGGDGGGGGDEDFDKMLQGMMQQL-LSKEVLYEPMKELRDKYPEWLEEN 159 (248)
T ss_dssp -------------------------HHHHHHHHHHH-TSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccCCCchhHHHHHHHHHHHh-ccHhhhhhhHHHHHHHhHHHHHhC
Confidence 345555666665543 22333333333332211 112245688899999999999543
No 154
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=42.58 E-value=37 Score=16.11 Aligned_cols=16 Identities=13% Similarity=0.362 Sum_probs=9.2
Q ss_pred CCCCCCcccHHHHHHH
Q 028605 112 DLKQQGFIERQEVKQM 127 (206)
Q Consensus 112 D~~~~g~It~~Ef~~~ 127 (206)
|.|++|.|+.-++..+
T Consensus 1 DvN~DG~vna~D~~~l 16 (21)
T PF00404_consen 1 DVNGDGKVNAIDLALL 16 (21)
T ss_dssp -TTSSSSSSHHHHHHH
T ss_pred CCCCCCcCCHHHHHHH
Confidence 4566777666655543
No 155
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=40.74 E-value=1.5e+02 Score=21.85 Aligned_cols=59 Identities=12% Similarity=0.116 Sum_probs=36.6
Q ss_pred CCcccHHHHHHHHHhhC--CCCChHHHHHHHHhhhCCCCCCcccHHHHHHHHHHHHHhcCC
Q 028605 79 NGILDFEEFARALSIFH--PNSPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLTESGM 137 (206)
Q Consensus 79 ~g~i~f~ef~~~~~~~~--~~~~~~~~~~~~F~~~D~~~~g~It~~Ef~~~l~~~~~~~~~ 137 (206)
...++=..|..++.... ...-+...+-.+|..+-..+...|++++|..+|..+....+.
T Consensus 16 ~~~m~~~~F~Kl~kD~~i~d~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~~lA~~~~~ 76 (154)
T PF05517_consen 16 GTEMDSKNFAKLCKDCGIIDKKLTSTDVDIIFSKVKAKGARKITFEQFLEALAELAEKKGK 76 (154)
T ss_dssp SSEEEHHHHHHHHHHTSS--SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHHHHHHHHSC
T ss_pred cccccHHHHHHHHHHcCCCCCCCchHHHHHHHHHhhcCCCcccCHHHHHHHHHHHHHHhhc
Confidence 34577777777775322 222456667778888766666678888888887766555444
No 156
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=40.56 E-value=52 Score=29.88 Aligned_cols=89 Identities=11% Similarity=0.189 Sum_probs=55.0
Q ss_pred HHHHHHHhhhCCCCCCcccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCC--CCcccHHHHHHHHhhChh--
Q 028605 102 DKIEFSFQLYDLKQQGFIERQEVKQMVVATLTESGMNLSDDVIESIIDKTFEEADTKH--DGKIDKEEWRNLVLRHPS-- 177 (206)
Q Consensus 102 ~~~~~~F~~~D~~~~g~It~~Ef~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~d~--~g~Is~~eF~~~l~~~~~-- 177 (206)
..+..+|++.|.|+||.++-.|+-..-+.|+ +.++...+++.+.. .....-+++ ++.++..-|.-.-....+
T Consensus 195 ~al~RIFki~D~d~D~~Lsd~Eln~fQ~~CF---~~pl~p~~l~~vk~-vv~e~~p~gv~~~~ltl~GFLfL~~lfierg 270 (625)
T KOG1707|consen 195 KALKRIFKISDSDNDGALSDAELNDFQKKCF---NTPLDPQELEDVKN-VVQEICPDGVYERGLTLPGFLFLNTLFIERG 270 (625)
T ss_pred HHHHHHHhhhccccccccchhhhhHHHHHhc---CCCCCHHHHHHHHH-HHHhhcCchhhhccccccchHHHHHHHHHhc
Confidence 4467789999999999999999999876664 44566555554432 223333333 445666666433222111
Q ss_pred -------HHhhhhhhhhhhhhhcc
Q 028605 178 -------LLKNMTLQYLKDITTTF 194 (206)
Q Consensus 178 -------~~~~~~~~~~~~~~~~~ 194 (206)
++..+|+..--++...|
T Consensus 271 r~EttW~iLR~fgY~DsleL~~~~ 294 (625)
T KOG1707|consen 271 RHETTWTILRKFGYTDSLELTDEY 294 (625)
T ss_pred cccchhhhhhhcCCcchhhhhhhh
Confidence 44556777667777777
No 157
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms]
Probab=38.66 E-value=56 Score=33.20 Aligned_cols=56 Identities=14% Similarity=0.342 Sum_probs=46.0
Q ss_pred HHhHHcCCCCCcccHHHHHHHHHhhCCCCChHHHHHHHHhhhCCCCCCcccHHHHHHH
Q 028605 70 VFDLFDTKHNGILDFEEFARALSIFHPNSPIDDKIEFSFQLYDLKQQGFIERQEVKQM 127 (206)
Q Consensus 70 lf~~~d~~~~g~i~f~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~It~~Ef~~~ 127 (206)
-|..+|+++.|.|+-.+|...+..--. .+..++..+..-...|.+...++++|..-
T Consensus 4062 tfkeydpdgkgiiskkdf~kame~~k~--ytqse~dfllscae~dend~~~y~dfv~r 4117 (5019)
T KOG2243|consen 4062 TFKEYDPDGKGIISKKDFHKAMEGHKH--YTQSEIDFLLSCAEADENDMFDYEDFVDR 4117 (5019)
T ss_pred cchhcCCCCCccccHHHHHHHHhcccc--chhHHHHHHHHhhccCccccccHHHHHHH
Confidence 688999999999999999999854332 45566777778888888899999999886
No 158
>PRK08570 rpl19e 50S ribosomal protein L19e; Reviewed
Probab=38.26 E-value=39 Score=24.90 Aligned_cols=42 Identities=17% Similarity=0.204 Sum_probs=32.4
Q ss_pred ccccchhhHHHHhccccCC--CCCCCCCCCcHHHHHhhcCCCHHHHHHHHH
Q 028605 4 CLDGLKHFCVVVVNCCDAD--LYKQPRGLEDPEALARETVFSVSEIEALYE 52 (206)
Q Consensus 4 ~~~~~~~~~~~~m~~~~s~--~~~~~~~~~~~~~l~~~~~~s~~e~~~l~~ 52 (206)
+|..++-++..+++|..++ ..| +.+++++.. .|.+++..|.+
T Consensus 3 ~l~~qkRLAA~iL~~G~~rVw~DP-----~~~~eI~~A--~tR~dIR~LI~ 46 (150)
T PRK08570 3 DLSAQKRLAADILGVGVSRVWIDP-----EALEDVAEA--ITREDIRELIK 46 (150)
T ss_pred chHHHHHHHHHHHCCCccceeeCH-----HHHHHHHHH--hhHHHHHHHHH
Confidence 5667788999999999998 344 677777777 77888877753
No 159
>COG2147 RPL19A Ribosomal protein L19E [Translation, ribosomal structure and biogenesis]
Probab=37.20 E-value=39 Score=24.75 Aligned_cols=42 Identities=17% Similarity=0.246 Sum_probs=33.6
Q ss_pred ccccchhhHHHHhccccCCC--CCCCCCCCcHHHHHhhcCCCHHHHHHHHH
Q 028605 4 CLDGLKHFCVVVVNCCDADL--YKQPRGLEDPEALARETVFSVSEIEALYE 52 (206)
Q Consensus 4 ~~~~~~~~~~~~m~~~~s~~--~~~~~~~~~~~~l~~~~~~s~~e~~~l~~ 52 (206)
++..++-++..++||.-++- .| +.+++++.. .|.+++..|.+
T Consensus 3 nl~~qkRLAA~il~vG~~Rvwidp-----~~~eei~~A--~TR~dIr~LIk 46 (150)
T COG2147 3 NLRTQKRLAADILGVGENRVWIDP-----NEIEEIASA--ITREDIRALIK 46 (150)
T ss_pred hHHHHHHHHHHHHccCcceeeeCh-----HHHHHHHHh--hhHHHHHHHHH
Confidence 46778899999999999983 44 778888877 88899888754
No 160
>COG3793 TerB Tellurite resistance protein [Inorganic ion transport and metabolism]
Probab=36.90 E-value=1.3e+02 Score=22.10 Aligned_cols=66 Identities=15% Similarity=0.208 Sum_probs=35.8
Q ss_pred CCCcccHHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHHHHhCCCCC-CcccHHHHHHHHhhChhHHh
Q 028605 115 QQGFIERQEVKQMVVATLTESGMNLS-DDVIESIIDKTFEEADTKHD-GKIDKEEWRNLVLRHPSLLK 180 (206)
Q Consensus 115 ~~g~It~~Ef~~~l~~~~~~~~~~~~-~~~~~~~~~~~f~~~d~d~~-g~Is~~eF~~~l~~~~~~~~ 180 (206)
-+|-++.+|...++..+-........ ...+-.....+-..++.|.. |.+...+.+..++..++..+
T Consensus 37 adg~~~~~e~~~~~~~~~s~~~L~~f~~~~i~~~~~~~~~~~~~d~~~gk~ea~~~I~~lk~d~e~Ae 104 (144)
T COG3793 37 ADGEVDSEEKQKMVQFLRSSAALSVFDSNEINEIFETLVGSFDTDFEIGKREAMKEIEDLKHDTEAAE 104 (144)
T ss_pred cccccChHHHHHHHHHHHcChhhhhccHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhcCChHHHH
Confidence 35667777777766544222221111 12334444444456666665 67777777777777766444
No 161
>PF02864 STAT_bind: STAT protein, DNA binding domain; InterPro: IPR013801 The STAT protein (Signal Transducers and Activators of Transcription) family contains transcription factors that are specifically activated to regulate gene transcription when cells encounter cytokines and growth factors, hence they act as signal transducers in the cytoplasm and transcription activators in the nucleus []. Binding of these factors to cell-surface receptors leads to receptor autophosphorylation at a tyrosine, the phosphotyrosine being recognised by the STAT SH2 domain, which mediates the recruitment of STAT proteins from the cytosol and their association with the activated receptor. The STAT proteins are then activated by phosphorylation via members of the JAK family of protein kinases, causing them to dimerise and translocated to the nucleus, where they bind to specific promoter sequences in target genes. In mammals, STATs comprise a family of seven structurally and functionally related proteins: Stat1, Stat2, Stat3, Stat4, Stat5a and Stat5b, Stat6. STAT proteins play a critical role in regulating innate and acquired host immune responses. Dysregulation of at least two STAT signalling cascades (i.e. Stat3 and Stat5) is associated with cellular transformation. Signalling through the JAK/STAT pathway is initiated when a cytokine binds to its corresponding receptor. This leads to conformational changes in the cytoplasmic portion of the receptor, initiating activation of receptor associated members of the JAK family of kinases. The JAKs, in turn, mediate phosphorylation at the specific receptor tyrosine residues, which then serve as docking sites for STATs and other signalling molecules. Once recruited to the receptor, STATs also become phosphorylated by JAKs, on a single tyrosine residue. Activated STATs dissociate from the receptor, dimerise, translocate to the nucleus and bind to members of the GAS (gamma activated site) family of enhancers. The seven STAT proteins identified in mammals range in size from 750 and 850 amino acids. The chromosomal distribution of these STATs, as well as the identification of STATs in more primitive eukaryotes, suggest that this family arose from a single primordial gene. STATs share structurally and functionally conserved domains including: an N-terminal domain that strengthens interactions between STAT dimers on adjacent DNA-binding sites; a coiled-coil STAT domain that is implicated in protein-protein interactions; a DNA-binding domain with an immunoglobulin-like fold similar to p53 tumour suppressor protein; an EF-hand-like linker domain connecting the DNA-binding and SH2 domains; an SH2 domain (IPR000980 from INTERPRO) that acts as a phosphorylation-dependent switch to control receptor recognition and DNA-binding; and a C-terminal transactivation domain []. The crystal structure of the N terminus of Stat4 reveals a dimer. The interface of this dimer is formed by a ring-shaped element consisting of five short helices. Several studies suggest that this N-terminal dimerisation promotes cooperativity of binding to tandem GAS elements and with the transcriptional coactivator CBP/p300. This entry represents the DNA-binding domain, which has an immunoglobulin-like structural fold.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0004871 signal transducer activity, 0006355 regulation of transcription, DNA-dependent, 0007165 signal transduction, 0005634 nucleus; PDB: 1YVL_A 1BF5_A 1Y1U_B 3CWG_B 1BG1_A.
Probab=36.35 E-value=73 Score=25.75 Aligned_cols=53 Identities=13% Similarity=0.240 Sum_probs=36.8
Q ss_pred cccHHHHHHHHHH-HHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHH
Q 028605 118 FIERQEVKQMVVA-TLTESGMNLSDDVIESIIDKTFEEADTKHDGKIDKEEWRN 170 (206)
Q Consensus 118 ~It~~Ef~~~l~~-~~~~~~~~~~~~~~~~~~~~~f~~~d~d~~g~Is~~eF~~ 170 (206)
.++..++..+|.. +....|-.++++++..+...+|..-....++.||..+|..
T Consensus 178 ~v~W~ql~~~L~~~F~~~~~R~L~~~~L~~L~~Kl~~~~~~~~~~~isw~~F~K 231 (254)
T PF02864_consen 178 KVPWPQLSEALSWQFSSETGRGLTDEQLQYLAEKLFGQNSSYNNMLISWSQFCK 231 (254)
T ss_dssp EEEHHHHHHHHHHHHHHHSS----HHHHHHHHHHHHTSSS-GCC-EEEHHHHHT
T ss_pred cccHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHhCCcccCCCceeEHHHhhh
Confidence 5889999999853 4556788999999999988777655555678999999954
No 162
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=35.76 E-value=82 Score=27.50 Aligned_cols=53 Identities=13% Similarity=0.041 Sum_probs=31.7
Q ss_pred CCCCcccHHHHHHHHHhhCCC---CChHHHHHHHHhhhCCCCCCcccHHHHHHHHH
Q 028605 77 KHNGILDFEEFARALSIFHPN---SPIDDKIEFSFQLYDLKQQGFIERQEVKQMVV 129 (206)
Q Consensus 77 ~~~g~i~f~ef~~~~~~~~~~---~~~~~~~~~~F~~~D~~~~g~It~~Ef~~~l~ 129 (206)
.|+...+-+||+....-.|.. ....+.++.+-+..|.|.+|.|+.+|=-.+++
T Consensus 40 agds~at~nefc~~~~~~c~s~~dklg~EAir~iHrqmDDD~nG~Id~~ESdeFlr 95 (575)
T KOG4403|consen 40 AGDSRATRNEFCEVDAPECKSEQDKLGYEAIRDIHRQMDDDHNGSIDVEESDEFLR 95 (575)
T ss_pred cCCchhhhccchhcCCchhhcccchhhHHHHHHHHHhcccccCCCcccccchHHHH
Confidence 344456666665544433331 12345567777777888888888777666653
No 163
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=33.85 E-value=87 Score=21.01 Aligned_cols=55 Identities=20% Similarity=0.451 Sum_probs=33.4
Q ss_pred CcccHHHHHHHHHHHHHhcCCCCCHHHHHHHHH---HHHHHhCCCCCCcccHHHHHHHHhhChhHHh
Q 028605 117 GFIERQEVKQMVVATLTESGMNLSDDVIESIID---KTFEEADTKHDGKIDKEEWRNLVLRHPSLLK 180 (206)
Q Consensus 117 g~It~~Ef~~~l~~~~~~~~~~~~~~~~~~~~~---~~f~~~d~d~~g~Is~~eF~~~l~~~~~~~~ 180 (206)
...+.+++..++... +.. +..++. ..++..+.+....++-+|+..++.++|.+++
T Consensus 34 ~~~~~~~l~~~~~~~----~~~-----~~~li~~~~~~~~~l~~~~~~~ls~~e~~~~l~~~p~Lik 91 (105)
T cd02977 34 EPPTKEELKELLAKL----GLG-----VEDLFNTRGTPYRKLGLADKDELSDEEALELMAEHPKLIK 91 (105)
T ss_pred CCCCHHHHHHHHHhc----CCC-----HHHHHhcCCchHHHcCCccccCCCHHHHHHHHHhCcCeee
Confidence 457778888875332 211 222332 3334444443457899999999999997644
No 164
>PF01280 Ribosomal_L19e: Ribosomal protein L19e; InterPro: IPR000196 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents structural domain of the ribosomal protein L19 from eukaryotes, as well as L19e from archaea []. L19/L19e is absent in bacteria. L19/L19e is part of the large ribosomal subunit, whose structure has been determined in a number of eukaryotic and archaeal species []. L19/L19e is a multi-helical protein consisting of two different 3-helical domains connected by a long, partly helical linker.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3IZR_T 3O58_S 3O5H_S 3IZS_T 2WWA_J 1S1I_P 2WW9_J 2ZKR_7 4A1A_O 4A1C_O ....
Probab=33.35 E-value=59 Score=23.96 Aligned_cols=41 Identities=20% Similarity=0.332 Sum_probs=29.2
Q ss_pred cccchhhHHHHhccccCC--CCCCCCCCCcHHHHHhhcCCCHHHHHHHHH
Q 028605 5 LDGLKHFCVVVVNCCDAD--LYKQPRGLEDPEALARETVFSVSEIEALYE 52 (206)
Q Consensus 5 ~~~~~~~~~~~m~~~~s~--~~~~~~~~~~~~~l~~~~~~s~~e~~~l~~ 52 (206)
|..++-++..+++|+.++ ..| +.+++++.. .|.+++..|.+
T Consensus 3 l~~QKRLAa~vL~~G~~rVw~DP-----~~~~eI~~A--~tR~~IR~LIk 45 (148)
T PF01280_consen 3 LKLQKRLAASVLGCGKNRVWIDP-----NELEEIANA--ITREDIRKLIK 45 (148)
T ss_dssp THHHHHHHHHHHTS-GGGEEE-S-----TTHHHHHH----SHHHHHHHHH
T ss_pred cHHHHHHHHHHHCCCCCcEEeCH-----HHHHHHHhh--hhHHHHHHHHH
Confidence 455678999999999997 344 778888887 77888877643
No 165
>PF03979 Sigma70_r1_1: Sigma-70 factor, region 1.1; InterPro: IPR007127 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This entry represents Region 1.1 which modulates DNA binding by region 2 and 4 when sigma is unbound by the core RNA polymerase [, ]. Region 1.1 is also involved in promoter binding.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2K6X_A.
Probab=32.77 E-value=81 Score=20.41 Aligned_cols=28 Identities=18% Similarity=0.451 Sum_probs=16.4
Q ss_pred CCCcccHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Q 028605 115 QQGFIERQEVKQMVVATLTESGMNLSDDVIESII 148 (206)
Q Consensus 115 ~~g~It~~Ef~~~l~~~~~~~~~~~~~~~~~~~~ 148 (206)
..|+||++|+..++. ...++.+.++.++
T Consensus 18 ~~G~lT~~eI~~~L~------~~~~~~e~id~i~ 45 (82)
T PF03979_consen 18 KKGYLTYDEINDALP------EDDLDPEQIDEIY 45 (82)
T ss_dssp HHSS-BHHHHHHH-S-------S---HHHHHHHH
T ss_pred hcCcCCHHHHHHHcC------ccCCCHHHHHHHH
Confidence 468899999998852 3456777776666
No 166
>PF12872 OST-HTH: OST-HTH/LOTUS domain; PDB: 2KPM_A 3S93_B 3RCO_A 2KZV_A.
Probab=32.14 E-value=1.3e+02 Score=18.57 Aligned_cols=36 Identities=8% Similarity=0.135 Sum_probs=14.9
Q ss_pred CcccHHHHHHHHhhCh--hHHhhhhhhhhhhhhhccCc
Q 028605 161 GKIDKEEWRNLVLRHP--SLLKNMTLQYLKDITTTFPS 196 (206)
Q Consensus 161 g~Is~~eF~~~l~~~~--~~~~~~~~~~~~~~~~~~~~ 196 (206)
|.++..++...+.+.. --.+.+|+..+.++..+.|.
T Consensus 22 g~v~ls~l~~~~~~~~~~f~~~~yG~~~l~~ll~~~~~ 59 (74)
T PF12872_consen 22 GWVSLSQLGQEYKKKYPDFDPRDYGFSSLSELLESLPD 59 (74)
T ss_dssp SSEEHHHHHHHHHHHHTT--TCCTTSSSHHHHHHT-TT
T ss_pred ceEEHHHHHHHHHHHCCCCCccccCCCcHHHHHHhCCC
Confidence 3455555555444422 12233455444444444443
No 167
>PTZ00436 60S ribosomal protein L19-like protein; Provisional
Probab=31.67 E-value=53 Score=27.14 Aligned_cols=42 Identities=10% Similarity=0.188 Sum_probs=32.4
Q ss_pred ccccchhhHHHHhccccCCC--CCCCCCCCcHHHHHhhcCCCHHHHHHHHH
Q 028605 4 CLDGLKHFCVVVVNCCDADL--YKQPRGLEDPEALARETVFSVSEIEALYE 52 (206)
Q Consensus 4 ~~~~~~~~~~~~m~~~~s~~--~~~~~~~~~~~~l~~~~~~s~~e~~~l~~ 52 (206)
+|..++-|...++||+.++- .+ +.++++... .|.++++.|.+
T Consensus 3 dLklQKRLAAsVL~cGk~RVWiDP-----nel~eIa~A--iTReDIRkLIk 46 (357)
T PTZ00436 3 SLKLQARLAADILRCGRHRVWLDP-----NEASEISNA--NSRKSVRKLIK 46 (357)
T ss_pred chHHHHHHHHHHhCCCCCceeeCH-----HHHHHHHHh--hhHHHHHHHHH
Confidence 56667789999999999983 44 677777776 77888887753
No 168
>PF05099 TerB: Tellurite resistance protein TerB; InterPro: IPR007791 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Direct interaction between DnaK and djlA is needed for the induction of the wcaABCDE operon which is involved in the synthesis of a colanic acid polysaccharide capsule. The colanic acid capsule may help the bacterium survive conditions outside the host [, ]; PDB: 2H5N_D 2JXU_A.
Probab=31.61 E-value=1.6e+02 Score=20.60 Aligned_cols=74 Identities=19% Similarity=0.136 Sum_probs=32.4
Q ss_pred CCcccHHHHHHHHHhhC-CCCChHHHHHHHHhhhCCCCCCcccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCC
Q 028605 79 NGILDFEEFARALSIFH-PNSPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLTESGMNLSDDVIESIIDKTFEEADT 157 (206)
Q Consensus 79 ~g~i~f~ef~~~~~~~~-~~~~~~~~~~~~F~~~D~~~~g~It~~Ef~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~ 157 (206)
||.++-+|-..+...+. ....+......+...++.-....++..++...+ ...++.++...++..++.....
T Consensus 37 DG~v~~~E~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~r~~ll~~l~~ia~A 109 (140)
T PF05099_consen 37 DGEVDPEEIEAIRQLLAERFGLSPEEAEELIELADELKQEPIDLEELLREL-------RDSLSPEEREDLLRMLIAIAYA 109 (140)
T ss_dssp TSS--CHHHHHHHHHHHHCGCGSCHHHHHHHHHHCHHHHHCCHHHHHHHHH-------CTS--HHHHHHHHHHHHHHCTC
T ss_pred CCCCCHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHhccccHHHHHHHH-------HHhhchHHHHHHHHHHHHHHhc
Confidence 56677777554443331 111122223344444433333334444443332 4445566666777766666665
Q ss_pred CC
Q 028605 158 KH 159 (206)
Q Consensus 158 d~ 159 (206)
||
T Consensus 110 DG 111 (140)
T PF05099_consen 110 DG 111 (140)
T ss_dssp TT
T ss_pred CC
Confidence 54
No 169
>COG4359 Uncharacterized conserved protein [Function unknown]
Probab=31.15 E-value=2.5e+02 Score=21.84 Aligned_cols=80 Identities=11% Similarity=0.111 Sum_probs=46.5
Q ss_pred CCCCCcccHHHHHHHHHhhCCCCChHHHHHHHHhhhCCCCCCcccHHH-HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Q 028605 76 TKHNGILDFEEFARALSIFHPNSPIDDKIEFSFQLYDLKQQGFIERQE-VKQMVVATLTESGMNLSDDVIESIIDKTFEE 154 (206)
Q Consensus 76 ~~~~g~i~f~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~It~~E-f~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~ 154 (206)
.+=||.||.+++...+...... .+ +. .+++.=-++.||..+ |..++.++ ..+.+++-+.+ .+.
T Consensus 8 sDFDGTITl~Ds~~~itdtf~~--~e--~k---~l~~~vls~tiS~rd~~g~mf~~i------~~s~~Eile~l---lk~ 71 (220)
T COG4359 8 SDFDGTITLNDSNDYITDTFGP--GE--WK---ALKDGVLSKTISFRDGFGRMFGSI------HSSLEEILEFL---LKD 71 (220)
T ss_pred ecCCCceEecchhHHHHhccCc--hH--HH---HHHHHHhhCceeHHHHHHHHHHhc------CCCHHHHHHHH---Hhh
Confidence 3557999999999998766542 22 33 444444567777544 44454333 33434444433 233
Q ss_pred hCCCCCCcccHHHHHHHHhhC
Q 028605 155 ADTKHDGKIDKEEWRNLVLRH 175 (206)
Q Consensus 155 ~d~d~~g~Is~~eF~~~l~~~ 175 (206)
.-.+ =.+.+|..|++.+
T Consensus 72 i~Id----p~fKef~e~ike~ 88 (220)
T COG4359 72 IKID----PGFKEFVEWIKEH 88 (220)
T ss_pred cccC----ccHHHHHHHHHHc
Confidence 3332 2578999999874
No 170
>KOG3442 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.91 E-value=1e+02 Score=21.98 Aligned_cols=43 Identities=28% Similarity=0.375 Sum_probs=34.7
Q ss_pred CCcccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcc
Q 028605 116 QGFIERQEVKQMVVATLTESGMNLSDDVIESIIDKTFEEADTKHDGKI 163 (206)
Q Consensus 116 ~g~It~~Ef~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~d~~g~I 163 (206)
.|.||.+|=.++|.. ..+++.++++.-...+|+.-|+.+-|..
T Consensus 53 ~~~iTlqEa~qILnV-----~~~ln~eei~k~yehLFevNdkskGGSF 95 (132)
T KOG3442|consen 53 NGKITLQEAQQILNV-----KEPLNREEIEKRYEHLFEVNDKSKGGSF 95 (132)
T ss_pred cccccHHHHhhHhCC-----CCCCCHHHHHHHHHHHHhccCcccCcce
Confidence 467999999998642 4578999999999999999888766643
No 171
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=30.08 E-value=84 Score=22.46 Aligned_cols=57 Identities=18% Similarity=0.238 Sum_probs=33.3
Q ss_pred CcccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhhChhHHh
Q 028605 117 GFIERQEVKQMVVATLTESGMNLSDDVIESIIDKTFEEADTKHDGKIDKEEWRNLVLRHPSLLK 180 (206)
Q Consensus 117 g~It~~Ef~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~d~~g~Is~~eF~~~l~~~~~~~~ 180 (206)
..++.+|+..++..+ +.. .+.+-.--...++..+.+. ..++-++...++..+|.+++
T Consensus 35 ~~~s~~eL~~~l~~~----~~~--~~~lin~~~~~~k~L~~~~-~~ls~~e~i~ll~~~P~Lik 91 (132)
T PRK13344 35 EPLTKEEILAILTKT----ENG--IESIVSSKNRYAKALDCDI-EELSVNEVIDLIQENPRILK 91 (132)
T ss_pred CCCCHHHHHHHHHHh----CCC--HHHhhccCcHHHHhCCcch-hcCCHHHHHHHHHhCcccee
Confidence 358888998886543 211 1111111122334444332 46788999999999998755
No 172
>PLN02228 Phosphoinositide phospholipase C
Probab=29.92 E-value=2.7e+02 Score=25.44 Aligned_cols=67 Identities=16% Similarity=0.279 Sum_probs=44.2
Q ss_pred ChHHHHHHHHhhhCCCCCCcccHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHHHhCCC----CCCcccHHHHHHHHh
Q 028605 99 PIDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLTESGM-NLSDDVIESIIDKTFEEADTK----HDGKIDKEEWRNLVL 173 (206)
Q Consensus 99 ~~~~~~~~~F~~~D~~~~g~It~~Ef~~~l~~~~~~~~~-~~~~~~~~~~~~~~f~~~d~d----~~g~Is~~eF~~~l~ 173 (206)
...+++..+|..+-.+ +.++.++|..+|... -+. ..+.+.++.++ ..+... ..|.++.+.|..+|.
T Consensus 21 ~~~~ei~~if~~~s~~--~~~t~~~~~~FL~~~---Q~~~~~~~~~~~~i~----~~~~~~~~~~~~~~~~~~gF~~yl~ 91 (567)
T PLN02228 21 EPPVSIKRLFEAYSRN--GKMSFDELLRFVSEV---QGERHAGLDYVQDIF----HSVKHHNVFHHHGLVHLNAFYRYLF 91 (567)
T ss_pred CCcHHHHHHHHHhcCC--CccCHHHHHHHHHHh---cCCccCCHHHHHHHH----HHhccchhhcccCccCHHHHHHHhc
Confidence 3567789999998643 579999999987543 122 23334444444 444332 346799999999997
Q ss_pred h
Q 028605 174 R 174 (206)
Q Consensus 174 ~ 174 (206)
.
T Consensus 92 s 92 (567)
T PLN02228 92 S 92 (567)
T ss_pred C
Confidence 5
No 173
>PF09373 PMBR: Pseudomurein-binding repeat; InterPro: IPR018975 Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) is a methanogenic Gram-positive microorganism with a cell wall consisting of pseudomurein. This repeat specifically binds to pseudomurein. This repeat is found at the N terminus of PeiW and PeiP which are pseudomurein binding phage proteins.
Probab=29.18 E-value=86 Score=16.48 Aligned_cols=21 Identities=29% Similarity=0.523 Sum_probs=14.7
Q ss_pred CCcccHHHHHHHHhhChhHHh
Q 028605 160 DGKIDKEEWRNLVLRHPSLLK 180 (206)
Q Consensus 160 ~g~Is~~eF~~~l~~~~~~~~ 180 (206)
.|.|++++++.+..+...+..
T Consensus 2 ~~~i~~~~~~d~a~rv~~f~~ 22 (33)
T PF09373_consen 2 SGTISKEEYLDMASRVNNFYE 22 (33)
T ss_pred CceecHHHHHHHHHHHHHHHH
Confidence 467888888888877554443
No 174
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=27.98 E-value=1.8e+02 Score=19.19 Aligned_cols=81 Identities=14% Similarity=0.110 Sum_probs=43.6
Q ss_pred CCCcccHHHHHHHHHhhCC-CCChHHHHHHHHhhhCCCCCCcccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhC
Q 028605 78 HNGILDFEEFARALSIFHP-NSPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLTESGMNLSDDVIESIIDKTFEEAD 156 (206)
Q Consensus 78 ~~g~i~f~ef~~~~~~~~~-~~~~~~~~~~~F~~~D~~~~g~It~~Ef~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d 156 (206)
.||.++-.|-...-..+.. .+.+......+...+........+..++...+.. ..+.+....++..++...-
T Consensus 12 aDG~v~~~E~~~i~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~r~~~l~~L~~vA~ 84 (104)
T cd07313 12 ADGEYDEEERAAIDRLLAERFGLDAEEAAELLAEAEALEEEAPDLYEFTSLIKE-------HFDYEERLELVEALWEVAY 84 (104)
T ss_pred HcCCCCHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH-------hCCHHHHHHHHHHHHHHHH
Confidence 3677777774444332211 0233444555556555544555667777665432 2355666667766666655
Q ss_pred CCCCCcccHHH
Q 028605 157 TKHDGKIDKEE 167 (206)
Q Consensus 157 ~d~~g~Is~~e 167 (206)
.| |.++-.|
T Consensus 85 AD--G~~~~~E 93 (104)
T cd07313 85 AD--GELDEYE 93 (104)
T ss_pred hc--CCCCHHH
Confidence 43 5565554
No 175
>PRK13654 magnesium-protoporphyrin IX monomethyl ester cyclase; Provisional
Probab=27.68 E-value=2.5e+02 Score=23.80 Aligned_cols=61 Identities=15% Similarity=0.281 Sum_probs=25.0
Q ss_pred HHHHHHhHHcC--CCCCcccHHHHHHHHHhhCCCCChHHHHHHHHhhhCCCCCCcccHHHHHHH
Q 028605 66 LINKVFDLFDT--KHNGILDFEEFARALSIFHPNSPIDDKIEFSFQLYDLKQQGFIERQEVKQM 127 (206)
Q Consensus 66 ~i~~lf~~~d~--~~~g~i~f~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~It~~Ef~~~ 127 (206)
.+..|+..+-. |..-.+-=++|...+..+.. .....-+..+-+.+-.+=+|.+-+.|+.+-
T Consensus 46 e~~A~l~E~r~DyNr~HF~R~~ef~~~~d~l~~-e~r~~FidFLerSctaEFSGflLYKEl~rr 108 (355)
T PRK13654 46 ELDAILEEMRADYNRHHFVRDEEFDQDWDHLDP-ETRKEFIDFLERSCTAEFSGFLLYKELSRR 108 (355)
T ss_pred HHHHHHHHHHhCcccccccCChhhhhchhhCCH-HHHHHHHHHHHHHhhhhhhhHHHHHHHHHh
Confidence 34445555433 33333444444443332211 112222333333334444555555555553
No 176
>PF09824 ArsR: ArsR transcriptional regulator; InterPro: IPR014517 Members of this family of archaeal proteins are conserved transcriptional regulators belonging to the ArsR family.
Probab=27.47 E-value=2.4e+02 Score=21.03 Aligned_cols=75 Identities=9% Similarity=0.209 Sum_probs=53.0
Q ss_pred hHHHHHHHHhhhCCCCCCcccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhhChhHH
Q 028605 100 IDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLTESGMNLSDDVIESIIDKTFEEADTKHDGKIDKEEWRNLVLRHPSLL 179 (206)
Q Consensus 100 ~~~~~~~~F~~~D~~~~g~It~~Ef~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~d~~g~Is~~eF~~~l~~~~~~~ 179 (206)
++.+.+..|..+- .+=+.+.+|+..++... -.+++++.+.+..+-++... |..+..+..+.+...|-++
T Consensus 70 PeKEYhtsYs~vq--aNFqcs~~DLsdii~i~------f~~deel~~~~e~i~~~v~~---Gn~Sl~~lsr~l~~sp~fi 138 (160)
T PF09824_consen 70 PEKEYHTSYSKVQ--ANFQCSMEDLSDIIYIA------FMSDEELRDYVEKIEKEVEA---GNTSLSDLSRKLGISPVFI 138 (160)
T ss_pred chHHHHhhHhhee--eeeEeeHHHHHHHHhee------ecCHHHHHHHHHHHHHHHHc---CCCcHHHHHHHhCCCHHHH
Confidence 4455555665543 33467888888876432 46788888888877777753 7889999999998888877
Q ss_pred hhhhhh
Q 028605 180 KNMTLQ 185 (206)
Q Consensus 180 ~~~~~~ 185 (206)
+.+-.+
T Consensus 139 rglAKR 144 (160)
T PF09824_consen 139 RGLAKR 144 (160)
T ss_pred HHHHHh
Confidence 766443
No 177
>PF04558 tRNA_synt_1c_R1: Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1 ; InterPro: IPR007639 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This is a domain found N-terminal to the catalytic domain of glutaminyl-tRNA synthetase (6.1.1.18 from EC) in eukaryotes but not in Escherichia coli. This domain is thought to bind RNA in a non-specific manner, enhancing interactions between the tRNA and enzyme, but is not essential for enzyme function [].; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3TL4_X.
Probab=27.15 E-value=73 Score=23.84 Aligned_cols=51 Identities=16% Similarity=0.275 Sum_probs=33.7
Q ss_pred ChHHHHHHHHhhhCCCCCCcccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHH
Q 028605 99 PIDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLTESGMNLSDDVIESIIDKTFEE 154 (206)
Q Consensus 99 ~~~~~~~~~F~~~D~~~~g~It~~Ef~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~ 154 (206)
.+..++..+++.+-.++...++..+|... ...|..+++++++..+...+..
T Consensus 82 kt~~Ql~AA~~Yl~~~~~~~~d~~~Fe~~-----cGVGV~VT~E~I~~~V~~~i~~ 132 (164)
T PF04558_consen 82 KTNLQLDAALKYLKSNPSEPIDVAEFEKA-----CGVGVVVTPEQIEAAVEKYIEE 132 (164)
T ss_dssp -SHHHHHHHHHHHHHHGG-G--HHHHHHT-----TTTT----HHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCCCCCHHHHHHH-----cCCCeEECHHHHHHHHHHHHHH
Confidence 56778888999987777778999999985 4557889999999988765543
No 178
>KOG2871 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.06 E-value=53 Score=28.06 Aligned_cols=32 Identities=19% Similarity=0.392 Sum_probs=27.4
Q ss_pred hHHHHHHHHhhhCCCCCCcccHHHHHHHHHHH
Q 028605 100 IDDKIEFSFQLYDLKQQGFIERQEVKQMVVAT 131 (206)
Q Consensus 100 ~~~~~~~~F~~~D~~~~g~It~~Ef~~~l~~~ 131 (206)
..+.++.+|+.+|..++|+|+.+-+..++..+
T Consensus 307 ~s~q~rR~f~a~d~~d~nfis~s~~~~vm~~~ 338 (449)
T KOG2871|consen 307 PSEQLRRNFHAYDPEDNNFISCSGLQIVMTAL 338 (449)
T ss_pred CCHHHHhhhhccCccCCCeeecHHHHHHHHHh
Confidence 46779999999999999999999888886543
No 179
>PF03705 CheR_N: CheR methyltransferase, all-alpha domain; InterPro: IPR022641 CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the N-terminal domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF01739 from PFAM. Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region [].; PDB: 1AF7_A 1BC5_A.
Probab=27.06 E-value=1.4e+02 Score=17.38 Aligned_cols=51 Identities=18% Similarity=0.347 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHhcCCCCCH---HHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhhCh
Q 028605 121 RQEVKQMVVATLTESGMNLSD---DVIESIIDKTFEEADTKHDGKIDKEEWRNLVLRHP 176 (206)
Q Consensus 121 ~~Ef~~~l~~~~~~~~~~~~~---~~~~~~~~~~f~~~d~d~~g~Is~~eF~~~l~~~~ 176 (206)
.++|..+...+....|..++. ..++.-+...+... |.=+|.+|...+...|
T Consensus 2 d~~f~~~~~~i~~~~Gi~l~~~K~~~l~rRl~~rm~~~-----~~~~~~~y~~~L~~d~ 55 (57)
T PF03705_consen 2 DAEFERFRELIYRRTGIDLSEYKRSLLERRLARRMRAL-----GLPSFAEYYELLRSDP 55 (57)
T ss_dssp HHHHHHHHHHHHHHH-----GGGHHHHHHHHHHHHHHH-----T---HHHHHHHHHH-T
T ss_pred HHHHHHHHHHHHHHHCCCCchhhHHHHHHHHHHHHHHc-----CCCCHHHHHHHHHhCC
Confidence 345555555556666766654 34444444444444 3448899998888766
No 180
>PLN02222 phosphoinositide phospholipase C 2
Probab=26.47 E-value=3.3e+02 Score=24.96 Aligned_cols=67 Identities=12% Similarity=0.273 Sum_probs=45.3
Q ss_pred hHHHHHHHHhhhCCCCCCcccHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhh
Q 028605 100 IDDKIEFSFQLYDLKQQGFIERQEVKQMVVATLTESGM-NLSDDVIESIIDKTFEEADTKHDGKIDKEEWRNLVLR 174 (206)
Q Consensus 100 ~~~~~~~~F~~~D~~~~g~It~~Ef~~~l~~~~~~~~~-~~~~~~~~~~~~~~f~~~d~d~~g~Is~~eF~~~l~~ 174 (206)
...++..+|..+.. ++.++.++|..+|... -+. ..+.+.+..++... ... -..+.++++.|..+|..
T Consensus 23 ~~~ei~~if~~~~~--~~~mt~~~l~~FL~~~---Q~~~~~~~~~~~~ii~~~-~~~--~~~~~~~~~gF~~yL~s 90 (581)
T PLN02222 23 APREIKTIFEKYSE--NGVMTVDHLHRFLIDV---QKQDKATREDAQSIINSA-SSL--LHRNGLHLDAFFKYLFG 90 (581)
T ss_pred CcHHHHHHHHHhcC--CCCcCHHHHHHHHHHh---cCCccCCHHHHHHHHHhh-hhh--hhccCcCHHHHHHHhcC
Confidence 44578999999854 4799999999987543 222 34566666666432 111 23567999999999975
No 181
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=26.16 E-value=1.7e+02 Score=19.29 Aligned_cols=17 Identities=12% Similarity=0.180 Sum_probs=13.3
Q ss_pred CcccHHHHHHHHHhhCC
Q 028605 80 GILDFEEFARALSIFHP 96 (206)
Q Consensus 80 g~i~f~ef~~~~~~~~~ 96 (206)
..++|+++..-+...++
T Consensus 18 ~~~s~e~L~~~v~~~c~ 34 (83)
T cd06404 18 PSISLEELCNEVRDMCR 34 (83)
T ss_pred CCcCHHHHHHHHHHHhC
Confidence 35889998888877765
No 182
>PF12486 DUF3702: ImpA domain protein ; InterPro: IPR021069 This entry represents a conserved region located towards the C-terminal end of ImpA and related proteins. ImpA is an inner membrane protein, which has been suggested to be involved with proteins that are exported and associated with colony variations in Actinobacillus actinomycetemcomitans []. Note that many members are hypothetical proteins.
Probab=26.15 E-value=1.7e+02 Score=21.59 Aligned_cols=37 Identities=8% Similarity=0.125 Sum_probs=26.3
Q ss_pred HHHHHhhhCCCCCCcccHHHHHHHHHHHHHhcCCCCC
Q 028605 104 IEFSFQLYDLKQQGFIERQEVKQMVVATLTESGMNLS 140 (206)
Q Consensus 104 ~~~~F~~~D~~~~g~It~~Ef~~~l~~~~~~~~~~~~ 140 (206)
+..-....|+.+.+++|.+|++.++..+-+.....+.
T Consensus 71 L~~rL~~le~~rg~Y~TiSeLKT~vy~i~q~l~~~~P 107 (148)
T PF12486_consen 71 LADRLNQLEEQRGKYMTISELKTAVYQIQQSLNQSVP 107 (148)
T ss_pred HHHHHHHHHHhcCCceeHHHHHHHHHHHHHHhcCCCC
Confidence 3444556688888899999999998776655544443
No 183
>PF11569 Homez: Homeodomain leucine-zipper encoding, Homez; PDB: 2YS9_A.
Probab=25.88 E-value=1.1e+02 Score=18.55 Aligned_cols=24 Identities=17% Similarity=0.282 Sum_probs=18.6
Q ss_pred CCcHHHHHhhcCCCHHHHHHHHHH
Q 028605 30 LEDPEALARETVFSVSEIEALYEL 53 (206)
Q Consensus 30 ~~~~~~l~~~~~~s~~e~~~l~~~ 53 (206)
-.++..|...+++|.++++.|+..
T Consensus 25 E~DL~~L~~kS~ms~qqVr~WFa~ 48 (56)
T PF11569_consen 25 EEDLDELCDKSRMSYQQVRDWFAE 48 (56)
T ss_dssp TTHHHHHHHHTT--HHHHHHHHHH
T ss_pred HhhHHHHHHHHCCCHHHHHHHHHH
Confidence 478999999999999999988643
No 184
>PF09682 Holin_LLH: Phage holin protein (Holin_LLH); InterPro: IPR010026 This entry represents the Bacteriophage LL-H, Orf107, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=25.63 E-value=2.3e+02 Score=19.42 Aligned_cols=50 Identities=24% Similarity=0.329 Sum_probs=37.9
Q ss_pred HHhhhCCCCCCcccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhC
Q 028605 107 SFQLYDLKQQGFIERQEVKQMVVATLTESGMNLSDDVIESIIDKTFEEAD 156 (206)
Q Consensus 107 ~F~~~D~~~~g~It~~Ef~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d 156 (206)
+-+.....++|.--+++-...+...+...|..+++++++..++.....+.
T Consensus 56 veq~~~~~~~G~~K~~~A~~~v~~~L~~~gi~~t~~~i~~~IEaAV~~m~ 105 (108)
T PF09682_consen 56 VEQVAKEGGKGEEKKAEAVQYVKERLKKKGIKVTDEQIEGAIEAAVKEMN 105 (108)
T ss_pred HHHHHhccCCcHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHh
Confidence 34445455588888888888877778888899999999999887666553
No 185
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=25.10 E-value=2.3e+02 Score=19.37 Aligned_cols=57 Identities=25% Similarity=0.349 Sum_probs=32.7
Q ss_pred CcccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhhChhHHh
Q 028605 117 GFIERQEVKQMVVATLTESGMNLSDDVIESIIDKTFEEADTKHDGKIDKEEWRNLVLRHPSLLK 180 (206)
Q Consensus 117 g~It~~Ef~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~d~~g~Is~~eF~~~l~~~~~~~~ 180 (206)
...+.+|+..++..+ +.+ .+.+-.-=...++..+.+. ..++-+++..++.++|.+++
T Consensus 35 ~~~~~~el~~~~~~~----~~~--~~~l~n~~~~~~k~l~~~~-~~ls~~e~i~~l~~~p~Lik 91 (115)
T cd03032 35 QPLTKEELKEILSLT----ENG--VEDIISTRSKAFKNLNIDI-DELSLSELIRLISEHPSLLR 91 (115)
T ss_pred CcchHHHHHHHHHHh----cCC--HHHHHhcCcHHHHHcCCCc-ccCCHHHHHHHHHhChhhee
Confidence 357788888876433 211 1111111122334444333 45788999999999998755
No 186
>PTZ00097 60S ribosomal protein L19; Provisional
Probab=24.51 E-value=92 Score=23.59 Aligned_cols=41 Identities=20% Similarity=0.229 Sum_probs=30.7
Q ss_pred cccchhhHHHHhccccCC--CCCCCCCCCcHHHHHhhcCCCHHHHHHHHH
Q 028605 5 LDGLKHFCVVVVNCCDAD--LYKQPRGLEDPEALARETVFSVSEIEALYE 52 (206)
Q Consensus 5 ~~~~~~~~~~~m~~~~s~--~~~~~~~~~~~~~l~~~~~~s~~e~~~l~~ 52 (206)
|...+-++..+++|+.++ ..| +.+++++.. .|.+++..|.+
T Consensus 2 l~~QKRLAA~vL~cG~~rVWiDP-----~~~~eI~~A--~tR~dIR~LIk 44 (175)
T PTZ00097 2 LRLQKRLAASVLKCGKNRVWLDP-----NEASEISLA--NSRFSIRKLIK 44 (175)
T ss_pred chHHHHHHHHHHCCCCCceeeCH-----HHHHHHHHh--hhHHHHHHHHH
Confidence 445678899999999998 344 677777777 77888877753
No 187
>cd00481 Ribosomal_L19e Ribosomal protein L19e. L19e is found in the large ribosomal subunit of eukaryotes and archaea. L19e is distinct from the ribosomal subunit L19, which is found in prokaryotes. It consists of two small globular domains connected by an extended segment. It is located toward the surface of the large subunit, with one exposed end involved in forming the intersubunit bridge with the small subunit. The other exposed end is involved in forming the translocon binding site, along with L22, L23, L24, L29, and L31e subunits.
Probab=24.44 E-value=98 Score=22.70 Aligned_cols=39 Identities=15% Similarity=0.260 Sum_probs=29.2
Q ss_pred cchhhHHHHhccccCC--CCCCCCCCCcHHHHHhhcCCCHHHHHHHHH
Q 028605 7 GLKHFCVVVVNCCDAD--LYKQPRGLEDPEALARETVFSVSEIEALYE 52 (206)
Q Consensus 7 ~~~~~~~~~m~~~~s~--~~~~~~~~~~~~~l~~~~~~s~~e~~~l~~ 52 (206)
.++-++..+++|..++ ..| +.+++++.. .|.+++..|.+
T Consensus 3 ~QkRLAA~vL~~G~~rVW~DP-----~~~~eI~~A--~tR~dIR~LIk 43 (145)
T cd00481 3 LQKRLAADILKCGKNRVWIDP-----NELEEIANA--NTREDIRKLIK 43 (145)
T ss_pred HHHHHHHHHHCCCCCceeeCH-----HHHHHHHHh--hhHHHHHHHHH
Confidence 3567889999999998 344 677777776 77888877753
No 188
>KOG0998 consensus Synaptic vesicle protein EHS-1 and related EH domain proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=24.35 E-value=25 Score=33.50 Aligned_cols=62 Identities=15% Similarity=0.210 Sum_probs=50.2
Q ss_pred HHHHhHHcCCCCCcccHHHHHHHHHhhCCCCChHHHHHHHHhhhCCCCCCcccHHHHHHHHHHHH
Q 028605 68 NKVFDLFDTKHNGILDFEEFARALSIFHPNSPIDDKIEFSFQLYDLKQQGFIERQEVKQMVVATL 132 (206)
Q Consensus 68 ~~lf~~~d~~~~g~i~f~ef~~~~~~~~~~~~~~~~~~~~F~~~D~~~~g~It~~Ef~~~l~~~~ 132 (206)
..+|...|.+.+|.|+..+....+.. .+.....+..++...|.++.|.|++.+|.-.+..+.
T Consensus 286 ~~if~q~d~~~dG~I~s~~~~~~f~~---~gl~~~~l~~~w~l~d~~n~~~ls~~ef~~~~~~~~ 347 (847)
T KOG0998|consen 286 SKIFSQVDKDNDGSISSNEARNIFLP---FGLSKPRLAHVWLLADTQNTGTLSKDEFALAMHLLE 347 (847)
T ss_pred HHHHHhccccCCCccccccccccccc---CCCChhhhhhhhhhcchhccCcccccccchhhhhhh
Confidence 33788888889999999998777755 356777899999999999999999998887765443
No 189
>PF04282 DUF438: Family of unknown function (DUF438); InterPro: IPR007380 This is a a group of uncharacterised proteins.
Probab=23.98 E-value=1.5e+02 Score=18.82 Aligned_cols=18 Identities=33% Similarity=0.416 Sum_probs=11.5
Q ss_pred ccHHHHHHHHhhChhHHh
Q 028605 163 IDKEEWRNLVLRHPSLLK 180 (206)
Q Consensus 163 Is~~eF~~~l~~~~~~~~ 180 (206)
++.+|-.+.+.-+..+++
T Consensus 46 ~~~eeiq~LCdvH~~lf~ 63 (71)
T PF04282_consen 46 MPVEEIQKLCDVHAALFK 63 (71)
T ss_pred CCHHHHHHHhHHHHHHHH
Confidence 677777777666655443
No 190
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=23.92 E-value=1.9e+02 Score=19.79 Aligned_cols=54 Identities=15% Similarity=0.334 Sum_probs=33.2
Q ss_pred CcccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH---HHHHhCCCCCCcccHHHHHHHHhhChhHHh
Q 028605 117 GFIERQEVKQMVVATLTESGMNLSDDVIESIIDK---TFEEADTKHDGKIDKEEWRNLVLRHPSLLK 180 (206)
Q Consensus 117 g~It~~Ef~~~l~~~~~~~~~~~~~~~~~~~~~~---~f~~~d~d~~g~Is~~eF~~~l~~~~~~~~ 180 (206)
..+|.+|+..++..+ +.. +++++.. .++....+. ..++-+++..++.++|.+++
T Consensus 34 ~~~t~~el~~~l~~~----~~~-----~~~lin~~~~~y~~l~~~~-~~ls~~e~i~ll~~~P~Lik 90 (112)
T cd03034 34 TPPTAAELRELLAKL----GIS-----PRDLLRTKEAPYKELGLAD-PELSDEELIDAMAAHPILIE 90 (112)
T ss_pred CCcCHHHHHHHHHHc----CCC-----HHHHHhcCCchHHHcCCCc-cCCCHHHHHHHHHhCcCccc
Confidence 358888888875433 322 2223322 233443332 46889999999999998765
No 191
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=23.69 E-value=1.2e+02 Score=20.61 Aligned_cols=52 Identities=23% Similarity=0.453 Sum_probs=31.2
Q ss_pred cccHHHHHHHHHHHHHhcCCCCCHHHHHHHH---HHHHHHhCCCCCCcccHHHHHHHHhhChhHHh
Q 028605 118 FIERQEVKQMVVATLTESGMNLSDDVIESII---DKTFEEADTKHDGKIDKEEWRNLVLRHPSLLK 180 (206)
Q Consensus 118 ~It~~Ef~~~l~~~~~~~~~~~~~~~~~~~~---~~~f~~~d~d~~g~Is~~eF~~~l~~~~~~~~ 180 (206)
.+|.+|+..++... | +..++ ...++..+.+....++-+++..+|.++|.+++
T Consensus 35 p~s~~eL~~~l~~~----g-------~~~li~~~~~~yk~l~l~~~~~~s~~e~~~~l~~~p~Lik 89 (105)
T cd03035 35 GLDAATLERWLAKV----G-------WETLLNKRGTTWRKLDDAQKAALDAAKAIALMLEHPSLIK 89 (105)
T ss_pred CCCHHHHHHHHHHh----C-------hHHHHccCchHHHhCChhhhccCCHHHHHHHHHhCcCeee
Confidence 47888888875432 3 11222 12334444332235788999999999997654
No 192
>cd04790 HTH_Cfa-like_unk Helix-Turn-Helix DNA binding domain of putative Cfa-like transcription regulators. Putative helix-turn-helix (HTH) MerR-like transcription regulator; conserved, Cfa-like, unknown proteins (~172 a.a.). The N-terminal domain of these proteins appears to be related to the HTH domain of Cfa, a cyclopropane fatty acid synthase. These Cfa-like proteins have a unique C-terminal domain with conserved histidines (motif HXXFX7HXXF). Based on sequence similarity of the N-terminal domains, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domain
Probab=23.12 E-value=97 Score=23.26 Aligned_cols=53 Identities=8% Similarity=-0.028 Sum_probs=34.6
Q ss_pred chhhHHHHhccccCCCCCCCCCCCcHHHHHhhcCCCHHHHHHHHHHHHhhccC
Q 028605 8 LKHFCVVVVNCCDADLYKQPRGLEDPEALARETVFSVSEIEALYELFKKISSA 60 (206)
Q Consensus 8 ~~~~~~~~m~~~~s~~~~~~~~~~~~~~l~~~~~~s~~e~~~l~~~F~~~d~~ 60 (206)
.+..+..++.+.....+...+.......+.....+++.+...|...|....|+
T Consensus 96 ~~~~l~~ll~~~~~~~~~~~V~~~~w~~l~~~~g~~~~~m~~wh~~fe~~~p~ 148 (172)
T cd04790 96 QQRAIATLLKQPTLLKEQRLVTKEKWVAILKAAGMDEADMRRWHIEFEKMEPE 148 (172)
T ss_pred HHHHHHHHHHHHhhccccccCCHHHHHHHHHHcCCChHHHHHHHHHHHHhCcH
Confidence 33344444444333333444455666777788889999999999999988854
No 193
>cd01418 Ribosomal_L19e_A Ribosomal protein L19e, archaeal. L19e is found in the large ribosomal subunit of eukaryotes and archaea. L19e is distinct from the ribosomal subunit L19, which is found in prokaryotes. It consists of two small globular domains connected by an extended segment. It is located toward the surface of the large subunit, with one exposed end involved in forming the intersubunit bridge with the small subunit. The other exposed end is involved in forming the translocon binding site, along with L22, L23, L24, L29, and L31e subunits.
Probab=22.81 E-value=1.1e+02 Score=22.35 Aligned_cols=39 Identities=15% Similarity=0.210 Sum_probs=29.2
Q ss_pred cchhhHHHHhccccCC--CCCCCCCCCcHHHHHhhcCCCHHHHHHHHH
Q 028605 7 GLKHFCVVVVNCCDAD--LYKQPRGLEDPEALARETVFSVSEIEALYE 52 (206)
Q Consensus 7 ~~~~~~~~~m~~~~s~--~~~~~~~~~~~~~l~~~~~~s~~e~~~l~~ 52 (206)
.++-++..+++|..++ ..| +.+++++.. .|.+++..|.+
T Consensus 3 ~QkRLAA~iL~~G~~rVw~DP-----~~~~eI~~A--~tR~dIR~LI~ 43 (145)
T cd01418 3 SQRRLAADILGVGINRVWIDP-----ERLEEVAEA--ITRDDIRALIK 43 (145)
T ss_pred HHHHHHHHHHCCCCCeeeeCh-----HHHHHHHHh--hhHHHHHHHHH
Confidence 3567889999999997 344 677777777 77888877753
No 194
>PRK10026 arsenate reductase; Provisional
Probab=22.61 E-value=1.5e+02 Score=21.52 Aligned_cols=56 Identities=21% Similarity=0.373 Sum_probs=32.9
Q ss_pred cccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhhChhHHh
Q 028605 118 FIERQEVKQMVVATLTESGMNLSDDVIESIIDKTFEEADTKHDGKIDKEEWRNLVLRHPSLLK 180 (206)
Q Consensus 118 ~It~~Ef~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~d~~g~Is~~eF~~~l~~~~~~~~ 180 (206)
.+|.+|+..++..+ | .....+-.--...++....+.+ .++.++...+|.++|.+++
T Consensus 38 ppt~~eL~~~l~~~----g--~~~~~lint~~~~yr~L~~~~~-~ls~~e~l~ll~~~P~LIK 93 (141)
T PRK10026 38 PPTRDELVKLIADM----G--ISVRALLRKNVEPYEELGLAED-KFTDDQLIDFMLQHPILIN 93 (141)
T ss_pred CcCHHHHHHHHHhC----C--CCHHHHHHcCCchHHHcCCCcc-CCCHHHHHHHHHhCcccee
Confidence 47888888876432 3 2111111111224455544433 4799999999999997655
No 195
>PF08349 DUF1722: Protein of unknown function (DUF1722); InterPro: IPR013560 This domain of unknown function is found in bacteria and archaea and is homologous to the hypothetical protein ybgA from Escherichia coli.
Probab=22.43 E-value=2.7e+02 Score=19.23 Aligned_cols=50 Identities=14% Similarity=0.104 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhh
Q 028605 121 RQEVKQMVVATLTESGMNLSDDVIESIIDKTFEEADTKHDGKIDKEEWRNLVLR 174 (206)
Q Consensus 121 ~~Ef~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~d~~g~Is~~eF~~~l~~ 174 (206)
.....+++..+.......++.++.+.+. ...+.-.+|.|+.......++.
T Consensus 48 ~~~~~Nvl~Hi~Gyfk~~ls~~EK~~~~----~~i~~yr~g~i~l~~~l~~L~~ 97 (117)
T PF08349_consen 48 RGSHINVLQHIFGYFKKKLSSEEKQHFL----DLIEDYREGKIPLSVPLTLLKH 97 (117)
T ss_pred chhHHHHHHHHHHHHHHhCCHHHHHHHH----HHHHHHHcCCccHHHHHHHHHH
Confidence 3334444444444444566776666655 3444445677887776666644
No 196
>PF06992 Phage_lambda_P: Replication protein P; InterPro: IPR009731 This family consists of several Bacteriophage lambda replication protein P like proteins. The bacteriophage lambda P protein promoters replication of the phage chromosome by recruiting a key component of the cellular replication machinery to the viral origin. Specifically, P protein delivers one or more molecules of Escherichia coli DnaB helicase to a nucleoprotein structure formed by the lambda O initiator at the lambda replication origin [].; GO: 0006270 DNA-dependent DNA replication initiation
Probab=22.33 E-value=2.9e+02 Score=22.07 Aligned_cols=37 Identities=3% Similarity=0.035 Sum_probs=26.6
Q ss_pred CCCCCcc-cHHHHHHHHhhChhHHhhhhhhhhhhhhhccC
Q 028605 157 TKHDGKI-DKEEWRNLVLRHPSLLKNMTLQYLKDITTTFP 195 (206)
Q Consensus 157 ~d~~g~I-s~~eF~~~l~~~~~~~~~~~~~~~~~~~~~~~ 195 (206)
..++.++ |..+|+.|++.... ..+|+|+..++...|.
T Consensus 94 ~~~spF~PS~GqFI~WCk~~~~--~~lGLP~~del~~~~~ 131 (233)
T PF06992_consen 94 ASESPFWPSPGQFIAWCKPGDY--EALGLPSVDELYQRYK 131 (233)
T ss_pred hcCCCCCCChhHHHHHHhcchH--HhcCCCCHHHHHHHHH
Confidence 3344444 88999999987654 4589999988777653
No 197
>PF05920 Homeobox_KN: Homeobox KN domain; InterPro: IPR008422 This entry represents a homeobox transcription factor KN domain conserved from fungi to human and plants [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 3K2A_B 2LK2_A 1X2N_A 2DMN_A.
Probab=20.94 E-value=60 Score=18.02 Aligned_cols=26 Identities=27% Similarity=0.299 Sum_probs=18.7
Q ss_pred CCCCCcHHHHHhhcCCCHHHHHHHHH
Q 028605 27 PRGLEDPEALARETVFSVSEIEALYE 52 (206)
Q Consensus 27 ~~~~~~~~~l~~~~~~s~~e~~~l~~ 52 (206)
.+..++...++..+.+|..++..+..
T Consensus 10 YPs~~ek~~L~~~tgls~~Qi~~WF~ 35 (40)
T PF05920_consen 10 YPSKEEKEELAKQTGLSRKQISNWFI 35 (40)
T ss_dssp S--HHHHHHHHHHHTS-HHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 34457788899999999999887754
No 198
>PF08557 Lipid_DES: Sphingolipid Delta4-desaturase (DES); InterPro: IPR013866 Sphingolipids are important membrane signalling molecules involved in many different cellular functions in eukaryotes. Sphingolipid delta 4-desaturase catalyses the formation of (E)-sphing-4-enine []. Some proteins in this entry have bifunctional delta 4-desaturase/C-4-hydroxylase activity. Delta 4-desaturated sphingolipids may play a role in early signalling required for entry into meiotic and spermatid differentiation pathways during Drosophila spermatogenesis []. This small protein associates with FA_desaturase IPR005804 from INTERPRO and appears to be specific to sphingolipid delta 4-desaturase. ; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0006633 fatty acid biosynthetic process, 0055114 oxidation-reduction process, 0016021 integral to membrane
Probab=20.76 E-value=81 Score=17.57 Aligned_cols=16 Identities=25% Similarity=0.509 Sum_probs=12.9
Q ss_pred HHHHhhChhHHhhhhh
Q 028605 169 RNLVLRHPSLLKNMTL 184 (206)
Q Consensus 169 ~~~l~~~~~~~~~~~~ 184 (206)
..+|.++|++.+++|.
T Consensus 20 k~IL~k~PeIk~L~G~ 35 (39)
T PF08557_consen 20 KEILKKHPEIKKLMGP 35 (39)
T ss_pred HHHHHhChHHHHHhCC
Confidence 4578889999998874
No 199
>PF11363 DUF3164: Protein of unknown function (DUF3164); InterPro: IPR021505 This entry is represented by Bacteriophage B3, Orf6. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=20.39 E-value=3.8e+02 Score=20.68 Aligned_cols=59 Identities=12% Similarity=0.158 Sum_probs=32.7
Q ss_pred HHhcCCCCCHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhhChhHHhhh-hhhhhhhhhhcc
Q 028605 132 LTESGMNLSDDVIESIIDKTFEEADTKHDGKIDKEEWRNLVLRHPSLLKNM-TLQYLKDITTTF 194 (206)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~f~~~d~d~~g~Is~~eF~~~l~~~~~~~~~~-~~~~~~~~~~~~ 194 (206)
+.++.... ++++..++. ..|..|+.|.|+........+-.-.--.|. ++....|-++..
T Consensus 109 l~~w~~g~-~~~l~~lV~---~af~~dk~G~l~~~rIl~Lrrl~i~D~~w~~am~aI~dsi~v~ 168 (195)
T PF11363_consen 109 LNEWAKGA-DPELRALVN---RAFQVDKEGNLNTSRILGLRRLEIDDERWQEAMDAIKDSIQVV 168 (195)
T ss_pred HHHHhcCC-ChHHHHHHH---HHHhcCCCCCcCHHHHHHHHhccCCCHHHHHHHHHHHhceEec
Confidence 44444443 345666665 456778899999987776665432222222 445555555444
No 200
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=20.15 E-value=1.8e+02 Score=16.38 Aligned_cols=30 Identities=27% Similarity=0.393 Sum_probs=19.1
Q ss_pred HHHHHHHHHHhCCCC-CCcccHHHHHHHHhh
Q 028605 145 ESIIDKTFEEADTKH-DGKIDKEEWRNLVLR 174 (206)
Q Consensus 145 ~~~~~~~f~~~d~d~-~g~Is~~eF~~~l~~ 174 (206)
..++..+.+....+| ...++..||...+.+
T Consensus 6 ~~iI~vFhkYa~~~Gd~~~Lsk~Elk~Ll~~ 36 (44)
T PF01023_consen 6 ETIIDVFHKYAGKEGDKDTLSKKELKELLEK 36 (44)
T ss_dssp HHHHHHHHHHHTSSSSTTSEEHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCCCCCeEcHHHHHHHHHH
Confidence 344533334444444 558999999999875
No 201
>PF08672 APC2: Anaphase promoting complex (APC) subunit 2; InterPro: IPR014786 The anaphase-promoting complex (APC) or cyclosome is a multi-subunit E3 protein ubiquitin ligase that regulates important events in mitosis such as the initiation of anaphase and exit from telophase. The APC, in conjunction with other enzymes, assembles multi-ubiquitin chains on a variety of regulatory proteins, thereby targeting them for proteolysis by the 26S proteasome. Anaphase is initiated when the APC triggers the destruction of securin, thereby allowing the protease, separase, to disrupt sister-chromatid cohesion. Securin ubiquitination by the APC is inhibited by cyclin-dependent kinase 1 (Cdk1)-dependent phosphorylation []. Forkhead Box M1 (FoxM1), which is a transcription factor that is over-expressed in many cancers, is degraded in late mitosis and early G1 phase by the APC/cyclosome (APC/C) E3 ubiquitin ligase []. The APC/C targets mitotic cyclins for destruction in mitosis and G1 phase and is then inactivated at S phase. It thereby generates alternating states of high and low cyclin-Cdk activity, which is required for the alternation of mitosis and DNA replication []. The APC/C is composed of at least 13 subunits that stay tightly associated throughout the cell cycle: APC1, APC2, APC4, APC5, APC9, APC11, CDC16, CDC23, CDC26, CDC27, DOC1, MND2 and SWM1[], []. In fission yeast the 13 subunits are known as: Apc1, Apc2, Nuc2, Apc4, Apc5, Cut9, Apc8, Apc10, Apc11, Hcn1, Apc13, Apc14 and Apc15 []. This entry represents a C-terminal domain found in APC subunit 2. ; PDB: 1LDD_A.
Probab=20.15 E-value=2.2e+02 Score=17.32 Aligned_cols=32 Identities=16% Similarity=0.136 Sum_probs=18.4
Q ss_pred ChHHHHHHHHhhh--CCCCCCcccHHHHHHHHHHH
Q 028605 99 PIDDKIEFSFQLY--DLKQQGFIERQEVKQMVVAT 131 (206)
Q Consensus 99 ~~~~~~~~~F~~~--D~~~~g~It~~Ef~~~l~~~ 131 (206)
-+-+++..+.+++ +. +...++.+|+..++..+
T Consensus 12 l~l~RIh~mLkmf~~~~-~~~~~s~~eL~~fL~~l 45 (60)
T PF08672_consen 12 LPLDRIHSMLKMFPKDP-GGYDISLEELQEFLDRL 45 (60)
T ss_dssp EEHHHHHHHHHHH-GGG---TT--HHHHHHHHHHH
T ss_pred CCHHHHHHHHHhccCCC-CCCCCCHHHHHHHHHHH
Confidence 4566777777777 33 34457777777776554
No 202
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=20.05 E-value=1.6e+02 Score=20.04 Aligned_cols=57 Identities=21% Similarity=0.276 Sum_probs=31.0
Q ss_pred cccHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCCCC-CcccHHHHHHHHhhChhHHh
Q 028605 118 FIERQEVKQMVVATLTESGMNLSDDVIESIIDKTFEEADTKHD-GKIDKEEWRNLVLRHPSLLK 180 (206)
Q Consensus 118 ~It~~Ef~~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~d~d~~-g~Is~~eF~~~l~~~~~~~~ 180 (206)
..+.+|+..++... +.+. ..+-.--...++....+.. ..++-++...+|.++|.+++
T Consensus 35 ~~~~~el~~~~~~~----~~~~--~~l~~~~~~~~~~l~~~~~~~~~s~~e~~~~l~~~p~Lik 92 (111)
T cd03036 35 PPSKEELKKWLEKS----GLPL--KKFFNTSGKSYRELGLKDKLPSLSEEEALELLSSDGMLIK 92 (111)
T ss_pred cccHHHHHHHHHHc----CCCH--HHHHhcCCchHHhCCcccccccCCHHHHHHHHHhCcCeee
Confidence 47788888875432 3211 1111111123344443322 24688999999999997654
Done!