Query 028606
Match_columns 206
No_of_seqs 168 out of 1501
Neff 9.7
Searched_HMMs 46136
Date Fri Mar 29 14:08:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028606.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028606hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 4.5E-37 9.8E-42 272.1 15.1 192 1-199 206-424 (889)
2 PF00931 NB-ARC: NB-ARC domain 100.0 7.9E-30 1.7E-34 202.8 9.4 192 2-200 46-264 (287)
3 PLN03210 Resistant to P. syrin 99.9 8.1E-23 1.8E-27 188.4 16.9 187 2-199 232-450 (1153)
4 PF05729 NACHT: NACHT domain 97.4 0.0018 3.9E-08 46.7 8.7 74 53-126 79-163 (166)
5 PRK06893 DNA replication initi 97.2 0.0014 3E-08 50.6 6.9 103 57-162 93-207 (229)
6 PRK04841 transcriptional regul 97.0 0.061 1.3E-06 49.6 17.0 188 5-201 56-281 (903)
7 PRK00411 cdc6 cell division co 96.2 0.16 3.4E-06 42.3 12.5 116 8-126 88-220 (394)
8 PF13173 AAA_14: AAA domain 96.1 0.02 4.4E-07 39.8 5.8 69 46-117 52-126 (128)
9 TIGR03015 pepcterm_ATPase puta 96.1 0.5 1.1E-05 37.0 14.7 111 14-127 79-206 (269)
10 PF13401 AAA_22: AAA domain; P 95.9 0.025 5.4E-07 39.1 5.6 85 7-95 39-125 (131)
11 COG2909 MalT ATP-dependent tra 95.3 0.36 7.9E-06 43.7 11.6 118 7-126 66-207 (894)
12 TIGR02928 orc1/cdc6 family rep 94.8 1.3 2.8E-05 36.4 13.1 119 8-126 77-212 (365)
13 PRK09087 hypothetical protein; 93.6 0.56 1.2E-05 36.1 8.0 68 57-127 89-167 (226)
14 PRK05564 DNA polymerase III su 92.9 1.8 3.9E-05 35.0 10.3 71 54-125 92-164 (313)
15 cd01128 rho_factor Transcripti 92.6 0.15 3.2E-06 39.9 3.5 62 3-65 43-113 (249)
16 PRK08084 DNA replication initi 91.6 0.99 2.1E-05 34.9 7.1 103 57-162 99-213 (235)
17 TIGR03420 DnaA_homol_Hda DnaA 91.5 0.91 2E-05 34.5 6.8 103 57-162 92-205 (226)
18 PRK05642 DNA replication initi 90.7 1.4 3.1E-05 34.0 7.2 102 58-162 100-212 (234)
19 TIGR02903 spore_lon_C ATP-depe 90.2 0.79 1.7E-05 40.7 6.0 83 44-127 281-367 (615)
20 TIGR00767 rho transcription te 90.2 1.2 2.5E-05 37.5 6.5 63 3-65 195-265 (415)
21 PRK08727 hypothetical protein; 89.9 2.4 5.2E-05 32.7 7.8 73 56-128 94-177 (233)
22 PRK06620 hypothetical protein; 89.6 3.6 7.9E-05 31.3 8.5 101 56-162 86-193 (214)
23 PRK09376 rho transcription ter 89.4 0.9 1.9E-05 38.0 5.3 62 3-65 196-266 (416)
24 PF00308 Bac_DnaA: Bacterial d 88.1 0.81 1.8E-05 35.0 4.1 149 9-162 37-212 (219)
25 PF01637 Arch_ATPase: Archaeal 88.1 2.7 5.8E-05 31.7 7.0 73 54-126 117-204 (234)
26 PRK13342 recombination factor 87.1 3.6 7.8E-05 34.7 7.7 70 53-126 90-164 (413)
27 PRK07471 DNA polymerase III su 87.0 3.3 7.2E-05 34.4 7.3 72 54-126 140-213 (365)
28 PRK06645 DNA polymerase III su 86.6 3.2 7E-05 36.0 7.2 74 53-127 126-201 (507)
29 PF02463 SMC_N: RecF/RecN/SMC 86.1 0.83 1.8E-05 34.7 3.1 47 55-102 158-205 (220)
30 cd00561 CobA_CobO_BtuR ATP:cor 85.9 2.4 5.2E-05 30.8 5.2 52 45-97 84-139 (159)
31 PRK14087 dnaA chromosomal repl 85.2 5.9 0.00013 33.9 8.1 72 56-127 207-289 (450)
32 PRK14086 dnaA chromosomal repl 84.7 7.1 0.00015 34.8 8.4 70 58-127 380-460 (617)
33 PTZ00112 origin recognition co 84.7 21 0.00045 33.7 11.3 119 9-128 820-951 (1164)
34 COG1373 Predicted ATPase (AAA+ 83.9 19 0.00042 30.3 10.5 108 8-120 39-161 (398)
35 PRK14963 DNA polymerase III su 83.8 4.9 0.00011 34.9 7.0 73 54-127 115-189 (504)
36 COG2256 MGS1 ATPase related to 82.1 8.2 0.00018 32.4 7.3 84 39-126 87-176 (436)
37 PRK14961 DNA polymerase III su 81.1 9.2 0.0002 31.7 7.5 72 54-126 118-191 (363)
38 PRK12402 replication factor C 81.1 6.1 0.00013 31.9 6.4 72 54-126 124-197 (337)
39 PRK13341 recombination factor 80.7 10 0.00022 34.6 8.0 69 54-126 108-181 (725)
40 COG1474 CDC6 Cdc6-related prot 80.4 33 0.00071 28.6 11.9 119 8-128 75-205 (366)
41 PRK07003 DNA polymerase III su 80.2 13 0.00027 34.2 8.3 72 54-126 118-191 (830)
42 TIGR00678 holB DNA polymerase 80.0 21 0.00046 26.2 13.8 71 54-125 95-167 (188)
43 PRK09112 DNA polymerase III su 78.4 8.8 0.00019 31.7 6.5 71 54-125 140-212 (351)
44 PRK05707 DNA polymerase III su 78.2 12 0.00027 30.5 7.2 71 54-125 105-177 (328)
45 PRK07940 DNA polymerase III su 76.7 14 0.0003 31.1 7.3 71 54-125 116-188 (394)
46 PLN03025 replication factor C 76.3 22 0.00047 28.8 8.2 72 54-126 98-171 (319)
47 TIGR02397 dnaX_nterm DNA polym 76.1 15 0.00034 29.9 7.4 72 54-126 116-189 (355)
48 TIGR00708 cobA cob(I)alamin ad 75.5 12 0.00025 27.7 5.8 53 44-97 85-141 (173)
49 PRK12323 DNA polymerase III su 75.4 21 0.00045 32.3 8.2 73 53-126 122-196 (700)
50 COG0593 DnaA ATPase involved i 75.2 16 0.00036 30.8 7.3 68 56-126 176-257 (408)
51 PRK05986 cob(I)alamin adenolsy 75.2 13 0.00028 27.9 6.0 53 44-97 103-159 (191)
52 TIGR01242 26Sp45 26S proteasom 74.5 24 0.00053 29.1 8.2 76 54-129 214-309 (364)
53 PF02562 PhoH: PhoH-like prote 74.2 6.3 0.00014 29.9 4.3 42 51-96 112-156 (205)
54 PRK06964 DNA polymerase III su 73.9 17 0.00036 30.0 7.0 71 54-125 131-203 (342)
55 PF13177 DNA_pol3_delta2: DNA 73.6 7.9 0.00017 28.0 4.6 59 55-114 102-162 (162)
56 PRK07414 cob(I)yrinic acid a,c 72.0 16 0.00034 27.1 5.8 53 44-97 103-159 (178)
57 cd00009 AAA The AAA+ (ATPases 71.9 11 0.00023 25.6 4.9 46 52-97 81-131 (151)
58 PRK08903 DnaA regulatory inact 71.4 17 0.00038 27.6 6.3 104 56-162 91-203 (227)
59 TIGR00362 DnaA chromosomal rep 70.8 16 0.00035 30.7 6.4 71 57-127 201-282 (405)
60 TIGR02880 cbbX_cfxQ probable R 70.6 19 0.00042 28.6 6.6 70 56-126 122-208 (284)
61 KOG2543 Origin recognition com 68.9 64 0.0014 27.2 9.1 113 7-125 57-192 (438)
62 PRK14960 DNA polymerase III su 68.6 50 0.0011 30.0 9.0 73 53-126 116-190 (702)
63 PRK07994 DNA polymerase III su 68.6 30 0.00066 31.2 7.8 73 53-126 117-191 (647)
64 PRK00149 dnaA chromosomal repl 68.3 27 0.00059 29.8 7.3 71 57-127 213-294 (450)
65 PRK14955 DNA polymerase III su 68.1 27 0.00058 29.3 7.1 72 54-126 126-199 (397)
66 PRK14949 DNA polymerase III su 67.8 23 0.00049 33.2 7.0 73 53-126 117-191 (944)
67 PRK08691 DNA polymerase III su 67.6 34 0.00074 31.1 7.9 72 54-126 118-191 (709)
68 PRK14959 DNA polymerase III su 67.3 26 0.00056 31.4 7.0 73 53-126 117-191 (624)
69 PRK08116 hypothetical protein; 67.1 14 0.0003 29.3 5.0 47 49-96 173-221 (268)
70 PRK12422 chromosomal replicati 66.6 32 0.00069 29.5 7.3 72 56-127 203-285 (445)
71 PRK14957 DNA polymerase III su 66.4 29 0.00062 30.6 7.1 73 53-126 117-191 (546)
72 PF07693 KAP_NTPase: KAP famil 66.3 45 0.00097 26.7 8.0 58 42-102 157-220 (325)
73 PRK07764 DNA polymerase III su 66.3 39 0.00085 31.4 8.3 73 53-126 118-192 (824)
74 PRK14951 DNA polymerase III su 66.3 31 0.00067 30.9 7.4 72 54-126 123-196 (618)
75 PRK06581 DNA polymerase III su 65.8 48 0.001 26.1 7.5 102 53-161 87-190 (263)
76 PRK04132 replication factor C 65.0 70 0.0015 29.9 9.5 86 40-126 609-702 (846)
77 COG2109 BtuR ATP:corrinoid ade 64.8 17 0.00037 27.3 4.7 53 44-97 110-166 (198)
78 PF02572 CobA_CobO_BtuR: ATP:c 64.1 20 0.00043 26.4 5.0 54 43-97 83-140 (172)
79 PRK10536 hypothetical protein; 62.8 15 0.00033 29.0 4.3 41 51-95 169-212 (262)
80 PRK14954 DNA polymerase III su 61.7 92 0.002 28.0 9.5 73 53-126 125-199 (620)
81 PRK14088 dnaA chromosomal repl 61.6 90 0.0019 26.7 9.2 73 55-127 194-277 (440)
82 PF14024 DUF4240: Protein of u 61.2 20 0.00042 24.9 4.3 81 113-197 1-81 (128)
83 PRK06871 DNA polymerase III su 61.1 47 0.001 27.2 7.1 72 54-126 106-179 (325)
84 PRK14962 DNA polymerase III su 60.7 29 0.00063 30.0 6.1 72 54-126 116-189 (472)
85 PRK06090 DNA polymerase III su 60.2 52 0.0011 26.8 7.2 71 54-125 107-179 (319)
86 PRK07399 DNA polymerase III su 59.7 41 0.00088 27.3 6.5 72 53-126 122-195 (314)
87 COG0396 sufC Cysteine desulfur 59.7 30 0.00065 26.9 5.3 65 44-108 151-216 (251)
88 PRK14971 DNA polymerase III su 58.0 1.2E+02 0.0026 27.3 9.6 72 54-126 120-193 (614)
89 PF05621 TniB: Bacterial TniB 57.9 45 0.00097 27.0 6.3 156 8-165 98-268 (302)
90 CHL00181 cbbX CbbX; Provisiona 57.4 65 0.0014 25.7 7.3 70 57-127 124-210 (287)
91 TIGR00340 zpr1_rel ZPR1-relate 56.7 30 0.00064 25.3 4.7 47 18-65 95-148 (163)
92 TIGR00611 recf recF protein. A 56.3 18 0.00039 30.1 4.0 44 53-99 300-344 (365)
93 PRK08769 DNA polymerase III su 55.9 53 0.0012 26.8 6.6 70 54-124 112-183 (319)
94 PRK14956 DNA polymerase III su 55.5 55 0.0012 28.4 6.8 73 53-126 119-193 (484)
95 KOG2028 ATPase related to the 55.1 1.3E+02 0.0027 25.6 8.4 83 40-126 205-294 (554)
96 PRK14969 DNA polymerase III su 53.9 63 0.0014 28.4 7.1 72 54-126 118-191 (527)
97 PRK06305 DNA polymerase III su 52.5 97 0.0021 26.6 7.9 72 54-126 120-193 (451)
98 PHA02544 44 clamp loader, smal 50.5 1.3E+02 0.0028 24.0 11.2 69 54-123 99-170 (316)
99 PRK13539 cytochrome c biogenes 49.7 34 0.00073 25.6 4.3 62 48-112 138-200 (207)
100 PRK14964 DNA polymerase III su 49.5 78 0.0017 27.6 6.9 72 54-126 115-188 (491)
101 KOG2227 Pre-initiation complex 48.4 49 0.0011 28.6 5.3 110 18-128 218-340 (529)
102 PRK07993 DNA polymerase III su 48.1 1E+02 0.0022 25.3 7.1 71 54-125 107-179 (334)
103 TIGR02881 spore_V_K stage V sp 47.9 83 0.0018 24.5 6.4 70 56-126 106-191 (261)
104 PRK08699 DNA polymerase III su 47.9 90 0.0019 25.5 6.8 70 55-125 113-184 (325)
105 cd03228 ABCC_MRP_Like The MRP 46.9 89 0.0019 22.5 6.1 53 48-101 107-160 (171)
106 PRK14958 DNA polymerase III su 45.9 80 0.0017 27.6 6.5 72 54-126 118-191 (509)
107 PRK00440 rfc replication facto 45.8 1.5E+02 0.0033 23.5 12.6 71 55-126 102-174 (319)
108 smart00709 Zpr1 Duplicated dom 45.7 25 0.00053 25.6 2.9 47 18-65 97-153 (160)
109 PRK14952 DNA polymerase III su 45.3 1E+02 0.0022 27.5 7.1 72 54-126 117-190 (584)
110 TIGR00635 ruvB Holliday juncti 45.0 50 0.0011 26.3 4.9 42 86-127 130-173 (305)
111 PRK08058 DNA polymerase III su 44.7 1.7E+02 0.0037 23.8 13.4 70 54-124 109-180 (329)
112 PRK07133 DNA polymerase III su 44.6 99 0.0022 28.4 7.0 72 54-126 117-190 (725)
113 PRK05896 DNA polymerase III su 44.3 1E+02 0.0023 27.6 7.0 71 55-126 119-191 (605)
114 PRK14953 DNA polymerase III su 44.1 1.4E+02 0.003 26.0 7.6 73 53-126 117-191 (486)
115 PRK07276 DNA polymerase III su 44.0 1.2E+02 0.0026 24.4 6.8 69 53-123 102-172 (290)
116 PRK07413 hypothetical protein; 43.8 79 0.0017 26.5 5.8 51 44-95 293-347 (382)
117 cd03253 ABCC_ATM1_transporter 43.5 92 0.002 23.6 6.0 61 47-110 147-208 (236)
118 PF05673 DUF815: Protein of un 43.5 1.3E+02 0.0027 23.7 6.6 48 53-100 104-155 (249)
119 cd03249 ABC_MTABC3_MDL1_MDL2 M 43.5 91 0.002 23.7 6.0 53 48-101 150-203 (238)
120 PRK07413 hypothetical protein; 43.4 61 0.0013 27.2 5.1 52 45-97 114-169 (382)
121 PRK09111 DNA polymerase III su 43.2 89 0.0019 28.0 6.4 72 54-126 131-204 (598)
122 PRK09162 hypoxanthine-guanine 43.0 46 0.00099 24.6 4.0 33 51-86 94-126 (181)
123 cd03227 ABC_Class2 ABC-type Cl 43.0 61 0.0013 23.2 4.7 55 55-111 99-154 (162)
124 cd03251 ABCC_MsbA MsbA is an e 42.6 99 0.0022 23.4 6.1 61 47-110 148-209 (234)
125 PF00004 AAA: ATPase family as 42.2 1E+02 0.0022 20.5 5.5 40 56-95 59-111 (132)
126 PF13304 AAA_21: AAA domain; P 41.8 56 0.0012 24.4 4.6 41 57-98 259-301 (303)
127 cd03247 ABCC_cytochrome_bd The 41.3 1.1E+02 0.0023 22.2 5.8 54 47-101 108-162 (178)
128 PF01695 IstB_IS21: IstB-like 41.3 9.1 0.0002 28.2 0.1 39 57-96 110-150 (178)
129 TIGR02639 ClpA ATP-dependent C 40.9 1.5E+02 0.0032 27.3 7.7 33 48-80 545-578 (731)
130 PRK14970 DNA polymerase III su 40.2 2.1E+02 0.0045 23.5 13.3 72 54-126 107-180 (367)
131 KOG4354 N-acetyl-gamma-glutamy 40.2 29 0.00063 27.3 2.6 85 12-98 223-309 (340)
132 cd03244 ABCC_MRP_domain2 Domai 39.4 1.1E+02 0.0025 22.8 5.9 53 48-101 150-203 (221)
133 PRK06921 hypothetical protein; 38.6 23 0.0005 28.0 2.0 40 56-95 178-224 (266)
134 TIGR02324 CP_lyasePhnL phospho 38.1 1.1E+02 0.0025 22.9 5.7 55 48-102 160-215 (224)
135 COG2204 AtoC Response regulato 37.9 2.2E+02 0.0048 24.7 7.8 111 8-126 6-120 (464)
136 PF05707 Zot: Zonular occluden 37.9 47 0.001 24.6 3.5 43 55-97 79-127 (193)
137 KOG0989 Replication factor C, 37.6 73 0.0016 26.0 4.5 68 58-126 132-201 (346)
138 PRK08181 transposase; Validate 37.1 25 0.00055 27.8 2.0 39 57-96 169-209 (269)
139 PRK00080 ruvB Holliday junctio 36.8 69 0.0015 26.0 4.5 41 87-127 152-194 (328)
140 TIGR02759 TraD_Ftype type IV c 36.4 1.1E+02 0.0024 27.2 5.9 42 54-97 406-447 (566)
141 cd03252 ABCC_Hemolysin The ABC 36.1 1.3E+02 0.0029 22.8 5.9 53 48-101 149-202 (237)
142 PRK00304 hypothetical protein; 36.0 1.1E+02 0.0024 19.2 5.5 29 37-65 30-58 (75)
143 PRK06647 DNA polymerase III su 35.7 2.3E+02 0.0049 25.3 7.7 73 53-126 117-191 (563)
144 PRK14950 DNA polymerase III su 35.6 2E+02 0.0043 25.7 7.5 72 54-126 119-192 (585)
145 CHL00131 ycf16 sulfate ABC tra 35.2 1E+02 0.0022 23.7 5.2 55 47-101 161-216 (252)
146 TIGR03346 chaperone_ClpB ATP-d 35.2 2E+02 0.0044 27.0 7.7 47 48-95 659-717 (852)
147 TIGR00310 ZPR1_znf ZPR1 zinc f 35.0 41 0.00089 25.3 2.7 47 18-65 97-151 (192)
148 PRK14965 DNA polymerase III su 34.2 1.5E+02 0.0033 26.3 6.5 72 54-126 118-191 (576)
149 cd03254 ABCC_Glucan_exporter_l 33.9 1.6E+02 0.0034 22.2 6.0 54 47-101 149-203 (229)
150 cd03369 ABCC_NFT1 Domain 2 of 33.9 1.5E+02 0.0033 21.9 5.8 53 48-101 136-189 (207)
151 TIGR03740 galliderm_ABC gallid 33.7 1.3E+02 0.0029 22.5 5.5 55 48-102 135-190 (223)
152 COG1875 NYN ribonuclease and A 33.7 55 0.0012 27.5 3.4 40 52-95 345-387 (436)
153 PRK06835 DNA replication prote 33.6 33 0.00072 28.1 2.2 39 57-95 248-288 (329)
154 cd03216 ABC_Carb_Monos_I This 33.6 1.4E+02 0.0031 21.3 5.3 54 48-101 93-147 (163)
155 cd01127 TrwB Bacterial conjuga 33.6 1.3E+02 0.0029 25.3 5.9 41 54-96 269-309 (410)
156 cd03215 ABC_Carb_Monos_II This 33.5 1.4E+02 0.0031 21.7 5.4 54 48-101 115-169 (182)
157 PRK14266 phosphate ABC transpo 32.9 1.3E+02 0.0028 23.1 5.4 54 48-102 157-211 (250)
158 PF04665 Pox_A32: Poxvirus A32 32.8 1.4E+02 0.0031 23.3 5.4 39 56-95 99-137 (241)
159 TIGR01978 sufC FeS assembly AT 32.5 1.3E+02 0.0027 23.0 5.2 55 48-102 155-210 (243)
160 PRK08939 primosomal protein Dn 32.2 36 0.00078 27.5 2.2 39 55-94 217-259 (306)
161 cd03248 ABCC_TAP TAP, the Tran 31.4 1.9E+02 0.004 21.8 6.0 60 48-110 161-221 (226)
162 cd03245 ABCC_bacteriocin_expor 31.2 1.8E+02 0.0038 21.8 5.8 52 48-100 151-203 (220)
163 cd03230 ABC_DR_subfamily_A Thi 31.1 1.6E+02 0.0035 21.1 5.3 56 47-102 105-161 (173)
164 cd03246 ABCC_Protease_Secretio 31.0 1.5E+02 0.0033 21.3 5.2 53 48-100 107-160 (173)
165 PRK14948 DNA polymerase III su 31.0 2.6E+02 0.0056 25.3 7.4 72 54-126 120-193 (620)
166 PRK14249 phosphate ABC transpo 30.8 1.7E+02 0.0036 22.6 5.7 54 48-102 158-212 (251)
167 PRK09580 sufC cysteine desulfu 30.8 1.3E+02 0.0028 23.0 5.0 56 47-102 155-211 (248)
168 PF08121 Toxin_33: Waglerin fa 30.5 6.8 0.00015 17.5 -1.3 14 187-200 6-19 (22)
169 PRK08451 DNA polymerase III su 30.2 3.9E+02 0.0085 23.7 13.7 72 54-126 116-189 (535)
170 PF04835 Pox_A9: A9 protein co 30.2 34 0.00074 19.8 1.2 9 187-195 5-13 (54)
171 cd03268 ABC_BcrA_bacitracin_re 30.2 1.7E+02 0.0036 21.7 5.5 55 48-102 137-192 (208)
172 PRK12377 putative replication 30.2 48 0.001 25.9 2.5 41 55-95 163-205 (248)
173 cd03263 ABC_subfamily_A The AB 29.6 2E+02 0.0042 21.5 5.8 54 48-102 144-198 (220)
174 cd03240 ABC_Rad50 The catalyti 28.9 1E+02 0.0022 23.0 4.1 61 48-110 132-195 (204)
175 PRK14247 phosphate ABC transpo 28.8 1.9E+02 0.0041 22.2 5.7 53 48-101 157-210 (250)
176 cd03274 ABC_SMC4_euk Eukaryoti 28.6 1.1E+02 0.0025 23.0 4.3 46 56-102 150-196 (212)
177 PRK05563 DNA polymerase III su 28.5 3.3E+02 0.0071 24.2 7.6 73 53-126 117-191 (559)
178 TIGR03411 urea_trans_UrtD urea 28.0 1.9E+02 0.0041 22.0 5.5 54 48-102 154-208 (242)
179 cd03278 ABC_SMC_barmotin Barmo 27.7 1.2E+02 0.0026 22.6 4.2 47 54-101 134-181 (197)
180 PRK14246 phosphate ABC transpo 27.5 2E+02 0.0043 22.4 5.6 54 48-102 164-218 (257)
181 PRK14253 phosphate ABC transpo 27.4 1.8E+02 0.004 22.2 5.4 54 48-102 156-210 (249)
182 TIGR03608 L_ocin_972_ABC putat 27.3 1.7E+02 0.0037 21.5 5.1 54 47-100 144-198 (206)
183 cd03225 ABC_cobalt_CbiO_domain 27.3 1.8E+02 0.0038 21.6 5.2 55 48-102 145-200 (211)
184 PF03367 zf-ZPR1: ZPR1 zinc-fi 27.3 34 0.00074 24.9 1.1 47 18-65 99-154 (161)
185 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 27.3 2E+02 0.0042 21.8 5.4 56 47-102 152-208 (224)
186 COG2236 Predicted phosphoribos 27.2 41 0.00089 25.3 1.6 23 52-76 85-107 (192)
187 TIGR03522 GldA_ABC_ATP gliding 27.2 2.6E+02 0.0056 22.3 6.3 54 48-102 144-198 (301)
188 PRK12608 transcription termina 27.1 3.3E+02 0.0071 23.0 6.9 57 8-65 166-230 (380)
189 PRK13543 cytochrome c biogenes 27.1 1.5E+02 0.0034 22.1 4.8 56 48-103 148-204 (214)
190 PRK14272 phosphate ABC transpo 27.1 2E+02 0.0044 22.0 5.6 53 48-101 159-212 (252)
191 cd03272 ABC_SMC3_euk Eukaryoti 26.9 1.1E+02 0.0024 23.3 4.0 47 55-102 180-227 (243)
192 TIGR00960 3a0501s02 Type II (G 26.6 2.1E+02 0.0045 21.3 5.4 56 47-102 148-204 (216)
193 PRK14245 phosphate ABC transpo 26.5 2.1E+02 0.0045 22.0 5.6 53 48-101 157-210 (250)
194 PRK07952 DNA replication prote 26.5 50 0.0011 25.8 2.0 45 50-95 158-204 (244)
195 cd03224 ABC_TM1139_LivF_branch 26.4 1.9E+02 0.0042 21.6 5.3 55 48-102 143-198 (222)
196 cd05141 Barstar_evA4336-like B 26.3 1.7E+02 0.0037 18.3 6.9 68 11-79 3-75 (81)
197 cd03287 ABC_MSH3_euk MutS3 hom 26.1 2.2E+02 0.0047 21.8 5.4 47 54-102 109-160 (222)
198 cd03213 ABCG_EPDR ABCG transpo 25.4 2.1E+02 0.0044 21.1 5.1 51 47-97 121-172 (194)
199 cd03275 ABC_SMC1_euk Eukaryoti 25.4 1.3E+02 0.0028 23.2 4.2 46 56-101 178-224 (247)
200 PHA01159 hypothetical protein 25.4 74 0.0016 21.7 2.4 24 170-194 67-90 (114)
201 cd03250 ABCC_MRP_domain1 Domai 25.2 2.8E+02 0.0061 20.4 6.1 56 46-101 136-193 (204)
202 PRK14269 phosphate ABC transpo 25.2 2.5E+02 0.0053 21.5 5.7 54 47-101 152-206 (246)
203 PRK13538 cytochrome c biogenes 25.1 1.6E+02 0.0035 21.8 4.6 56 48-103 140-196 (204)
204 PRK14267 phosphate ABC transpo 25.1 2.2E+02 0.0048 21.8 5.5 53 48-101 160-213 (253)
205 PF09675 Chlamy_scaf: Chlamydi 25.1 29 0.00063 23.4 0.4 15 178-193 46-60 (114)
206 TIGR03689 pup_AAA proteasome A 25.0 3.6E+02 0.0078 23.8 7.0 73 54-126 288-378 (512)
207 PRK04966 hypothetical protein; 25.0 1.8E+02 0.0039 18.1 5.4 29 37-65 31-59 (72)
208 PRK14244 phosphate ABC transpo 24.9 2.2E+02 0.0047 21.9 5.4 53 48-101 160-213 (251)
209 PRK09183 transposase/IS protei 24.9 57 0.0012 25.6 2.1 40 55-95 164-205 (259)
210 PRK06526 transposase; Provisio 24.8 62 0.0013 25.4 2.3 40 56-96 160-201 (254)
211 cd03269 ABC_putative_ATPase Th 24.7 2.1E+02 0.0046 21.2 5.2 55 48-102 139-194 (210)
212 cd03264 ABC_drug_resistance_li 24.7 2.9E+02 0.0062 20.5 5.9 55 47-102 140-195 (211)
213 PRK13700 conjugal transfer pro 24.7 2.1E+02 0.0046 26.4 5.7 42 53-96 416-457 (732)
214 PRK14258 phosphate ABC transpo 24.4 2.5E+02 0.0054 21.8 5.7 54 48-102 161-217 (261)
215 PRK04195 replication factor C 24.4 2.1E+02 0.0046 24.7 5.6 69 55-126 98-173 (482)
216 cd03300 ABC_PotA_N PotA is an 24.3 1.8E+02 0.0038 22.1 4.7 53 48-101 141-196 (232)
217 PRK10744 pstB phosphate transp 24.2 2.5E+02 0.0054 21.8 5.6 53 48-101 167-220 (260)
218 TIGR03771 anch_rpt_ABC anchore 24.2 2.2E+02 0.0048 21.4 5.2 55 47-101 123-178 (223)
219 KOG2634 Initiator tRNA phospho 24.1 1.4E+02 0.003 24.8 4.1 93 10-120 161-260 (476)
220 cd03214 ABC_Iron-Siderophores_ 24.1 2E+02 0.0043 20.8 4.8 55 47-101 107-163 (180)
221 cd03217 ABC_FeS_Assembly ABC-t 24.0 2.1E+02 0.0045 21.1 5.0 55 47-101 114-169 (200)
222 PRK14235 phosphate transporter 24.0 2.2E+02 0.0048 22.2 5.3 54 48-102 174-228 (267)
223 PRK14273 phosphate ABC transpo 24.0 2.5E+02 0.0053 21.6 5.5 54 48-102 161-215 (254)
224 cd03288 ABCC_SUR2 The SUR doma 24.0 2.7E+02 0.0059 21.5 5.8 54 47-101 166-220 (257)
225 cd03231 ABC_CcmA_heme_exporter 24.0 2.1E+02 0.0045 21.2 4.9 54 48-101 136-190 (201)
226 PRK14265 phosphate ABC transpo 23.9 2.5E+02 0.0054 22.0 5.6 61 48-110 172-233 (274)
227 PF14532 Sigma54_activ_2: Sigm 23.9 1.1E+02 0.0024 21.1 3.2 41 55-95 69-109 (138)
228 cd03267 ABC_NatA_like Similar 23.9 2.3E+02 0.005 21.6 5.3 55 48-102 164-220 (236)
229 PRK14237 phosphate transporter 23.8 2.3E+02 0.005 22.1 5.4 53 48-101 174-227 (267)
230 PRK14268 phosphate ABC transpo 23.7 2.3E+02 0.005 21.9 5.3 53 48-101 165-218 (258)
231 PF04084 ORC2: Origin recognit 23.6 4.1E+02 0.009 21.8 8.3 51 15-65 93-147 (326)
232 PRK11124 artP arginine transpo 23.6 2.5E+02 0.0055 21.3 5.5 54 48-101 152-206 (242)
233 PRK14236 phosphate transporter 23.6 2.3E+02 0.0049 22.2 5.3 53 48-101 179-232 (272)
234 CHL00095 clpC Clp protease ATP 23.5 1.3E+02 0.0027 28.1 4.3 48 47-95 602-661 (821)
235 PRK10908 cell division protein 23.3 2.3E+02 0.005 21.2 5.2 55 48-102 148-203 (222)
236 PF00910 RNA_helicase: RNA hel 23.2 2.1E+02 0.0046 18.7 4.4 21 46-67 41-61 (107)
237 TIGR01166 cbiO cobalt transpor 23.2 1.1E+02 0.0023 22.4 3.2 50 48-97 138-188 (190)
238 cd03266 ABC_NatA_sodium_export 23.2 2.5E+02 0.0054 20.9 5.3 55 48-102 147-202 (218)
239 cd03226 ABC_cobalt_CbiO_domain 22.8 2.4E+02 0.0051 20.8 5.1 55 48-102 137-192 (205)
240 cd03282 ABC_MSH4_euk MutS4 hom 22.8 2.8E+02 0.0061 20.8 5.4 49 53-104 106-159 (204)
241 PRK14262 phosphate ABC transpo 22.7 2.8E+02 0.0061 21.2 5.6 53 48-101 157-210 (250)
242 cd03235 ABC_Metallic_Cations A 22.6 2.3E+02 0.0051 21.0 5.0 55 48-102 143-198 (213)
243 PRK13540 cytochrome c biogenes 22.6 1.5E+02 0.0033 21.8 4.0 55 47-101 137-192 (200)
244 TIGR03873 F420-0_ABC_ATP propo 22.6 2.4E+02 0.0053 21.7 5.3 56 47-102 147-203 (256)
245 PRK14242 phosphate transporter 22.5 2.5E+02 0.0054 21.5 5.3 53 48-101 160-213 (253)
246 cd03262 ABC_HisP_GlnQ_permease 22.4 2.5E+02 0.0055 20.7 5.2 54 48-101 146-200 (213)
247 PRK14274 phosphate ABC transpo 22.4 2.8E+02 0.006 21.4 5.6 53 48-101 166-219 (259)
248 TIGR02858 spore_III_AA stage I 22.2 1.8E+02 0.004 23.0 4.5 42 54-101 193-234 (270)
249 PRK09493 glnQ glutamine ABC tr 22.1 2.5E+02 0.0055 21.3 5.2 55 48-102 147-202 (240)
250 PRK11614 livF leucine/isoleuci 22.0 2.2E+02 0.0048 21.6 4.9 54 48-101 148-202 (237)
251 COG4618 ArpD ABC-type protease 22.0 1.5E+02 0.0033 26.1 4.1 55 47-102 482-538 (580)
252 cd03241 ABC_RecN RecN ATPase i 21.9 1.5E+02 0.0032 23.4 3.9 47 55-102 192-239 (276)
253 smart00534 MUTSac ATPase domai 21.9 3.2E+02 0.007 19.9 5.9 57 45-103 66-129 (185)
254 PRK14238 phosphate transporter 21.8 2.5E+02 0.0054 22.0 5.2 54 48-102 178-232 (271)
255 cd03285 ABC_MSH2_euk MutS2 hom 21.7 3.7E+02 0.0079 20.5 6.5 48 53-103 107-160 (222)
256 PRK10869 recombination and rep 21.6 1.4E+02 0.003 26.4 4.0 46 56-102 453-499 (553)
257 cd03257 ABC_NikE_OppD_transpor 21.5 2.3E+02 0.0049 21.3 4.8 55 48-102 156-212 (228)
258 PRK14264 phosphate ABC transpo 21.5 2.9E+02 0.0062 22.2 5.6 55 47-102 210-265 (305)
259 PRK15056 manganese/iron transp 21.5 2.8E+02 0.0061 21.7 5.5 55 48-102 153-208 (272)
260 COG1195 RecF Recombinational D 21.4 1.9E+02 0.0041 24.2 4.5 49 46-99 293-343 (363)
261 TIGR03864 PQQ_ABC_ATP ABC tran 21.3 2.3E+02 0.0051 21.5 4.9 60 48-110 143-205 (236)
262 PRK11081 tRNA guanosine-2'-O-m 21.2 1.9E+02 0.0042 22.3 4.3 33 46-80 7-41 (229)
263 PRK14239 phosphate transporter 21.2 2.9E+02 0.0063 21.1 5.4 52 48-100 159-211 (252)
264 PRK13649 cbiO cobalt transport 21.0 2.5E+02 0.0054 22.0 5.1 55 48-102 156-211 (280)
265 PRK14263 phosphate ABC transpo 20.8 3.2E+02 0.007 21.2 5.6 53 48-101 160-213 (261)
266 PRK10771 thiQ thiamine transpo 20.7 2.4E+02 0.0052 21.3 4.8 55 48-102 140-196 (232)
267 cd03286 ABC_MSH6_euk MutS6 hom 20.5 2.4E+02 0.0053 21.5 4.7 57 45-103 97-160 (218)
268 PRK14252 phosphate ABC transpo 20.4 2.8E+02 0.0061 21.5 5.3 53 48-101 172-225 (265)
269 PRK14240 phosphate transporter 20.4 3.1E+02 0.0067 21.0 5.4 54 48-102 157-211 (250)
270 cd03255 ABC_MJ0796_Lo1CDE_FtsE 20.4 2.3E+02 0.005 21.1 4.6 53 48-100 151-205 (218)
271 cd03229 ABC_Class3 This class 20.3 2.8E+02 0.006 20.0 4.9 54 48-101 111-166 (178)
272 PRK07132 DNA polymerase III su 20.3 4.7E+02 0.01 21.1 14.2 71 54-125 89-161 (299)
273 PRK00409 recombination and DNA 20.3 5.8E+02 0.013 23.9 7.8 47 54-103 406-457 (782)
274 PRK10865 protein disaggregatio 20.1 2.9E+02 0.0064 26.0 5.9 38 57-95 672-720 (857)
275 PRK13647 cbiO cobalt transport 20.1 2.6E+02 0.0057 21.9 5.0 55 47-101 148-203 (274)
276 PRK14251 phosphate ABC transpo 20.0 2.9E+02 0.0063 21.1 5.2 53 48-101 158-211 (251)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=4.5e-37 Score=272.11 Aligned_cols=192 Identities=24% Similarity=0.349 Sum_probs=166.2
Q ss_pred CcCCCCeeEEEEeCCCCCHHHHHHHHHHHhhcCCCC--CCCCHHHHHHHHHHHcCCCcEEEEEcCCCCCChhhHHHHhhh
Q 028606 1 MQDHFDLQASTYVGGDFDALKVTKSILKSIATDQPV--DDNDLNLLQGKLKKQFSGKKFLLFLDDLWNVNYDLWSYLCRP 78 (206)
Q Consensus 1 v~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~--~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~~~~~~~l~~~ 78 (206)
|+++||.++||+||++|+...++++|++.+ +.... .....++++..|.+.|++||||||||||| +...|+.|+.+
T Consensus 206 v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l-~~~~~~~~~~~~~~~~~~i~~~L~~krfllvLDDIW--~~~dw~~I~~~ 282 (889)
T KOG4658|consen 206 VGNHFDGVIWVVVSKEFTTRKIQQTILERL-GLLDEEWEDKEEDELASKLLNLLEGKRFLLVLDDIW--EEVDWDKIGVP 282 (889)
T ss_pred hcccCceEEEEEEcccccHHhHHHHHHHHh-ccCCcccchhhHHHHHHHHHHHhccCceEEEEeccc--ccccHHhcCCC
Confidence 578999999999999999999999999998 54332 23344789999999999999999999999 88999999999
Q ss_pred ccCCCCCCcEEEEeCCChHHHHh-hCCCCceeCCCCCHHHHHHHHHHhhcCCCCCCC-C-ch----------------hh
Q 028606 79 LVESCAPGSKDIITARFTDVATM-VATTSTYPLECLSDEDCLRILAEQSLGTTDFSN-D-TE----------------PI 139 (206)
Q Consensus 79 l~~~~~~gs~IivTTr~~~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~af~~~~~~~-~-~~----------------~~ 139 (206)
+| ....||+|++|||+++||.. |++...++++.|+.++||.||++.+|....... . +. .+
T Consensus 283 ~p-~~~~g~KvvlTTRs~~V~~~~m~~~~~~~v~~L~~~eaW~LF~~~v~~~~~~~~~~i~~lak~v~~kC~GLPLAl~v 361 (889)
T KOG4658|consen 283 FP-SRENGSKVVLTTRSEEVCGRAMGVDYPIEVECLTPEEAWDLFQKKVGPNTLGSHPDIEELAKEVAEKCGGLPLALNV 361 (889)
T ss_pred CC-CccCCeEEEEEeccHhhhhccccCCccccccccCccccHHHHHHhhccccccccccHHHHHHHHHHHhCChHHHHHH
Confidence 99 77889999999999999999 888889999999999999999999976633222 1 11 28
Q ss_pred hcchhhcCCCCCHHHHHHHHhhchhhcc------cchHHHHHHHHhcCCCchhHHHHHhHhhhhhh
Q 028606 140 LGPSDRSSHRMDIEEDNNIEDHQAQERR------NWTVSLVIKLLYIIISSRGLFNFYFYFHYVCR 199 (206)
Q Consensus 140 lg~~l~~~~~~~~~~w~~~~~~~~~~~~------~~~i~~~L~~sy~~Lp~~~lk~CflY~~~~~r 199 (206)
+|+.| ..+.+.++|+++.+.+.+... .+.+.++|++||++||++ +|.||+||+.||.
T Consensus 362 iG~~m--a~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLklSyd~L~~~-lK~CFLycalFPE 424 (889)
T KOG4658|consen 362 LGGLL--ACKKTVQEWRRALNVLKSSLAADFSGMEESILPILKLSYDNLPEE-LKSCFLYCALFPE 424 (889)
T ss_pred HHHHh--cCCCcHHHHHHHHccccccccCCCCchhhhhHHhhhccHhhhhHH-HHHHHHhhccCCc
Confidence 88889 777789999999998876622 248899999999999977 9999999999997
No 2
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.96 E-value=7.9e-30 Score=202.82 Aligned_cols=192 Identities=22% Similarity=0.312 Sum_probs=148.6
Q ss_pred cCCCCeeEEEEeCCCCCHHHHHHHHHHHhhcCCCC---CCCCHHHHHHHHHHHcCCCcEEEEEcCCCCCChhhHHHHhhh
Q 028606 2 QDHFDLQASTYVGGDFDALKVTKSILKSIATDQPV---DDNDLNLLQGKLKKQFSGKKFLLFLDDLWNVNYDLWSYLCRP 78 (206)
Q Consensus 2 ~~~F~~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~---~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~~~~~~~l~~~ 78 (206)
+++|+.++||.+++..+...+++.|+.++ +.... ...+.+.....+++.|+++++|||||||| +...|+.+...
T Consensus 46 ~~~f~~v~wv~~~~~~~~~~~~~~i~~~l-~~~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~--~~~~~~~l~~~ 122 (287)
T PF00931_consen 46 KNRFDGVIWVSLSKNPSLEQLLEQILRQL-GEPDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVW--DEEDLEELREP 122 (287)
T ss_dssp CCCCTEEEEEEEES-SCCHHHHHHHHHHH-TCC-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE---SHHHH------
T ss_pred ccccccccccccccccccccccccccccc-cccccccccccccccccccchhhhccccceeeeeeec--ccccccccccc
Confidence 57899999999999999999999999999 55422 45678889999999999999999999999 89999999988
Q ss_pred ccCCCCCCcEEEEeCCChHHHHhhCC-CCceeCCCCCHHHHHHHHHHhhcCCC--CCCCCch----------------hh
Q 028606 79 LVESCAPGSKDIITARFTDVATMVAT-TSTYPLECLSDEDCLRILAEQSLGTT--DFSNDTE----------------PI 139 (206)
Q Consensus 79 l~~~~~~gs~IivTTr~~~v~~~~~~-~~~~~l~~L~~~~~~~Lf~~~af~~~--~~~~~~~----------------~~ 139 (206)
++ ....|++||+|||+..++..++. ...+++++|+.+++++||.+.++... .....+. .+
T Consensus 123 ~~-~~~~~~kilvTTR~~~v~~~~~~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~ 201 (287)
T PF00931_consen 123 LP-SFSSGSKILVTTRDRSVAGSLGGTDKVIELEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKL 201 (287)
T ss_dssp -H-CHHSS-EEEEEESCGGGGTTHHSCEEEEECSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHH
T ss_pred cc-ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 88 77789999999999999887765 56899999999999999999997655 1111111 16
Q ss_pred hcchhhcCCCCCHHHHHHHHhhchhhcc-----cchHHHHHHHHhcCCCchhHHHHHhHhhhhhhc
Q 028606 140 LGPSDRSSHRMDIEEDNNIEDHQAQERR-----NWTVSLVIKLLYIIISSRGLFNFYFYFHYVCRL 200 (206)
Q Consensus 140 lg~~l~~~~~~~~~~w~~~~~~~~~~~~-----~~~i~~~L~~sy~~Lp~~~lk~CflY~~~~~r~ 200 (206)
+|+.+..+. +..+|..+++++.+... ...+..++.+||+.||++ +|.||+||++||.-
T Consensus 202 ~a~~l~~~~--~~~~w~~~~~~l~~~~~~~~~~~~~~~~~l~~s~~~L~~~-~~~~f~~L~~f~~~ 264 (287)
T PF00931_consen 202 IASYLRSKS--TVDEWEEALEELENSLRESRDYDRSVFSALELSYDSLPDE-LRRCFLYLSIFPEG 264 (287)
T ss_dssp HHHHHHHHH--SSSSHHHHHHHHHHCHTCSSGSCHHHHHHHHHHHHSSHTC-CHHHHHHGGGSGTT
T ss_pred ccccccccc--cccccccccccccccccccccccccccccceechhcCCcc-HHHHHhhCcCCCCC
Confidence 666774433 66899999988766653 258999999999999998 99999999999863
No 3
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.90 E-value=8.1e-23 Score=188.37 Aligned_cols=187 Identities=14% Similarity=0.191 Sum_probs=141.3
Q ss_pred cCCCCeeEEEEe---CCC-----------CC-HHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHcCCCcEEEEEcCCCC
Q 028606 2 QDHFDLQASTYV---GGD-----------FD-ALKVTKSILKSIATDQPVDDNDLNLLQGKLKKQFSGKKFLLFLDDLWN 66 (206)
Q Consensus 2 ~~~F~~~~wv~v---s~~-----------~~-~~~i~~~i~~~l~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~ 66 (206)
..+|+..+|+.. +.. ++ ...++++++.++.......... ...+++.|++||+||||||||
T Consensus 232 ~~~F~g~vfv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~----~~~~~~~L~~krvLLVLDdv~- 306 (1153)
T PLN03210 232 SRQFQSSVFIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKIYH----LGAMEERLKHRKVLIFIDDLD- 306 (1153)
T ss_pred hhcCCeEEEeeccccccchhhcccccccccchhHHHHHHHHHHHhCCCCcccCC----HHHHHHHHhCCeEEEEEeCCC-
Confidence 457888877631 111 11 2345666666652221111111 246788899999999999999
Q ss_pred CChhhHHHHhhhccCCCCCCcEEEEeCCChHHHHhhCCCCceeCCCCCHHHHHHHHHHhhcCCCCCCCCch---------
Q 028606 67 VNYDLWSYLCRPLVESCAPGSKDIITARFTDVATMVATTSTYPLECLSDEDCLRILAEQSLGTTDFSNDTE--------- 137 (206)
Q Consensus 67 ~~~~~~~~l~~~l~~~~~~gs~IivTTr~~~v~~~~~~~~~~~l~~L~~~~~~~Lf~~~af~~~~~~~~~~--------- 137 (206)
+...|+.+..... +.++||+||||||+++++..++..++|.++.|++++||+||+.+||+...+....+
T Consensus 307 -~~~~l~~L~~~~~-~~~~GsrIIiTTrd~~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~ 384 (1153)
T PLN03210 307 -DQDVLDALAGQTQ-WFGSGSRIIVITKDKHFLRAHGIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALR 384 (1153)
T ss_pred -CHHHHHHHHhhCc-cCCCCcEEEEEeCcHHHHHhcCCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHH
Confidence 8999999987766 67889999999999999998888889999999999999999999998654332211
Q ss_pred --------hhhcchhhcCCCCCHHHHHHHHhhchhhcccchHHHHHHHHhcCCCchhHHHHHhHhhhhhh
Q 028606 138 --------PILGPSDRSSHRMDIEEDNNIEDHQAQERRNWTVSLVIKLLYIIISSRGLFNFYFYFHYVCR 199 (206)
Q Consensus 138 --------~~lg~~l~~~~~~~~~~w~~~~~~~~~~~~~~~i~~~L~~sy~~Lp~~~lk~CflY~~~~~r 199 (206)
.++|+.|.. .+.++|+.+++++.+.. ...+..+|++||++|+++..|.||+|+++|++
T Consensus 385 c~GLPLAl~vlgs~L~~---k~~~~W~~~l~~L~~~~-~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~ 450 (1153)
T PLN03210 385 AGNLPLGLNVLGSYLRG---RDKEDWMDMLPRLRNGL-DGKIEKTLRVSYDGLNNKKDKAIFRHIACLFN 450 (1153)
T ss_pred hCCCcHHHHHHHHHHcC---CCHHHHHHHHHHHHhCc-cHHHHHHHHHhhhccCccchhhhhheehhhcC
Confidence 166777743 36899999999986543 35899999999999987449999999999875
No 4
>PF05729 NACHT: NACHT domain
Probab=97.37 E-value=0.0018 Score=46.66 Aligned_cols=74 Identities=28% Similarity=0.293 Sum_probs=50.1
Q ss_pred CCCcEEEEEcCCCCCCh--h-----hHHH-HhhhccCCCCCCcEEEEeCCChHH---HHhhCCCCceeCCCCCHHHHHHH
Q 028606 53 SGKKFLLFLDDLWNVNY--D-----LWSY-LCRPLVESCAPGSKDIITARFTDV---ATMVATTSTYPLECLSDEDCLRI 121 (206)
Q Consensus 53 ~~kr~LlVLDdv~~~~~--~-----~~~~-l~~~l~~~~~~gs~IivTTr~~~v---~~~~~~~~~~~l~~L~~~~~~~L 121 (206)
..+++++|+|++.+... . .+.. +...++....++.++|+|+|.... .........+.+.++++++..++
T Consensus 79 ~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 158 (166)
T PF05729_consen 79 KNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDIKQY 158 (166)
T ss_pred cCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHHHHH
Confidence 56799999999974311 1 1222 333334123568999999998776 33334445799999999999999
Q ss_pred HHHhh
Q 028606 122 LAEQS 126 (206)
Q Consensus 122 f~~~a 126 (206)
+.+..
T Consensus 159 ~~~~f 163 (166)
T PF05729_consen 159 LRKYF 163 (166)
T ss_pred HHHHh
Confidence 87654
No 5
>PRK06893 DNA replication initiation factor; Validated
Probab=97.21 E-value=0.0014 Score=50.61 Aligned_cols=103 Identities=18% Similarity=0.184 Sum_probs=63.6
Q ss_pred EEEEEcCCCCC-ChhhHHH-HhhhccCCCCCCcEEEE-eCCC---------hHHHHhhCCCCceeCCCCCHHHHHHHHHH
Q 028606 57 FLLFLDDLWNV-NYDLWSY-LCRPLVESCAPGSKDII-TARF---------TDVATMVATTSTYPLECLSDEDCLRILAE 124 (206)
Q Consensus 57 ~LlVLDdv~~~-~~~~~~~-l~~~l~~~~~~gs~Iiv-TTr~---------~~v~~~~~~~~~~~l~~L~~~~~~~Lf~~ 124 (206)
-+|+|||++.. ....|+. +...+......|+.+|+ |++. +.++..++...++++++++.++.++++.+
T Consensus 93 dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~ 172 (229)
T PRK06893 93 DLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQR 172 (229)
T ss_pred CEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHH
Confidence 48999999842 1345553 33333311224666655 4443 46666666677899999999999999999
Q ss_pred hhcCCCCCCCCchhhhcchhhcCCCCCHHHHHHHHhhc
Q 028606 125 QSLGTTDFSNDTEPILGPSDRSSHRMDIEEDNNIEDHQ 162 (206)
Q Consensus 125 ~af~~~~~~~~~~~~lg~~l~~~~~~~~~~w~~~~~~~ 162 (206)
.++... ....+.+...+..+...+...-..+++.+
T Consensus 173 ~a~~~~---l~l~~~v~~~L~~~~~~d~r~l~~~l~~l 207 (229)
T PRK06893 173 NAYQRG---IELSDEVANFLLKRLDRDMHTLFDALDLL 207 (229)
T ss_pred HHHHcC---CCCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 886432 22223344455455555666666666655
No 6
>PRK04841 transcriptional regulator MalT; Provisional
Probab=97.03 E-value=0.061 Score=49.58 Aligned_cols=188 Identities=8% Similarity=0.076 Sum_probs=97.6
Q ss_pred CCeeEEEEeCC-CCCHHHHHHHHHHHhhcCCCCC-------------CCCHHHHHHHHHHHcC--CCcEEEEEcCCCCCC
Q 028606 5 FDLQASTYVGG-DFDALKVTKSILKSIATDQPVD-------------DNDLNLLQGKLKKQFS--GKKFLLFLDDLWNVN 68 (206)
Q Consensus 5 F~~~~wv~vs~-~~~~~~i~~~i~~~l~~~~~~~-------------~~~~~~~~~~l~~~L~--~kr~LlVLDdv~~~~ 68 (206)
+...+|+++.. .-+...+...++..+ +..... ..+.......+...+. +.+++|||||+...+
T Consensus 56 ~~~~~w~~l~~~d~~~~~f~~~l~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~ 134 (903)
T PRK04841 56 KNNLGWYSLDESDNQPERFASYLIAAL-QQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLIT 134 (903)
T ss_pred CCCeEEEecCcccCCHHHHHHHHHHHH-HHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCC
Confidence 34578999965 446677777777776 311111 0122333333444443 678999999996322
Q ss_pred -hhhHHHHhhhccCCCCCCcEEEEeCCChH---HHHhhCCCCceeCC----CCCHHHHHHHHHHhhcCCCCCCCCch---
Q 028606 69 -YDLWSYLCRPLVESCAPGSKDIITARFTD---VATMVATTSTYPLE----CLSDEDCLRILAEQSLGTTDFSNDTE--- 137 (206)
Q Consensus 69 -~~~~~~l~~~l~~~~~~gs~IivTTr~~~---v~~~~~~~~~~~l~----~L~~~~~~~Lf~~~af~~~~~~~~~~--- 137 (206)
....+.+...++ ....+-.+|+|||... ....-.......+. +++.+++..+|.... |..-......
T Consensus 135 ~~~~~~~l~~l~~-~~~~~~~lv~~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~-~~~~~~~~~~~l~ 212 (903)
T PRK04841 135 NPEIHEAMRFFLR-HQPENLTLVVLSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRL-SSPIEAAESSRLC 212 (903)
T ss_pred ChHHHHHHHHHHH-hCCCCeEEEEEeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhcc-CCCCCHHHHHHHH
Confidence 222334444444 4446778889999742 11111112344455 899999999998755 3211100000
Q ss_pred h----------hhcchhhcCCCCCHHHHHHHHhhchhhcccchHHHHHHH-HhcCCCchhHHHHHhHhhhhhhcc
Q 028606 138 P----------ILGPSDRSSHRMDIEEDNNIEDHQAQERRNWTVSLVIKL-LYIIISSRGLFNFYFYFHYVCRLT 201 (206)
Q Consensus 138 ~----------~lg~~l~~~~~~~~~~w~~~~~~~~~~~~~~~i~~~L~~-sy~~Lp~~~lk~CflY~~~~~r~~ 201 (206)
. +++..+.... .+.. .....+. ......+...|.- -++.||++ .+..++..+.+.+.+
T Consensus 213 ~~t~Gwp~~l~l~~~~~~~~~-~~~~---~~~~~~~-~~~~~~~~~~l~~~v~~~l~~~-~~~~l~~~a~~~~~~ 281 (903)
T PRK04841 213 DDVEGWATALQLIALSARQNN-SSLH---DSARRLA-GINASHLSDYLVEEVLDNVDLE-TRHFLLRCSVLRSMN 281 (903)
T ss_pred HHhCChHHHHHHHHHHHhhCC-Cchh---hhhHhhc-CCCchhHHHHHHHHHHhcCCHH-HHHHHHHhcccccCC
Confidence 0 1111111110 0000 0001110 0011234444433 37899999 999999999887755
No 7
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=96.19 E-value=0.16 Score=42.31 Aligned_cols=116 Identities=14% Similarity=0.153 Sum_probs=72.5
Q ss_pred eEEEEeCCCCCHHHHHHHHHHHhhcC-C-CCCCCCHHHHHHHHHHHcC--CCcEEEEEcCCCCC----ChhhHHHHhhhc
Q 028606 8 QASTYVGGDFDALKVTKSILKSIATD-Q-PVDDNDLNLLQGKLKKQFS--GKKFLLFLDDLWNV----NYDLWSYLCRPL 79 (206)
Q Consensus 8 ~~wv~vs~~~~~~~i~~~i~~~l~~~-~-~~~~~~~~~~~~~l~~~L~--~kr~LlVLDdv~~~----~~~~~~~l~~~l 79 (206)
.++|......+...++..|+.++ .. . +....+.++....+.+.+. ++..+||||+++.- ....+..+....
T Consensus 88 ~v~in~~~~~~~~~~~~~i~~~l-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~ 166 (394)
T PRK00411 88 YVYINCQIDRTRYAIFSEIARQL-FGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAH 166 (394)
T ss_pred EEEEECCcCCCHHHHHHHHHHHh-cCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhh
Confidence 45555566667889999999998 44 2 2233456777777887775 34689999999721 122333433333
Q ss_pred cCCCCCCcE--EEEeCCChHHHHhhC-------CCCceeCCCCCHHHHHHHHHHhh
Q 028606 80 VESCAPGSK--DIITARFTDVATMVA-------TTSTYPLECLSDEDCLRILAEQS 126 (206)
Q Consensus 80 ~~~~~~gs~--IivTTr~~~v~~~~~-------~~~~~~l~~L~~~~~~~Lf~~~a 126 (206)
. ...+++ +|.+++...+..... ....+.+++.+.++..+++..++
T Consensus 167 ~--~~~~~~v~vI~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~ 220 (394)
T PRK00411 167 E--EYPGARIGVIGISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRV 220 (394)
T ss_pred h--ccCCCeEEEEEEECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHH
Confidence 2 122333 666666554433221 12357899999999999998876
No 8
>PF13173 AAA_14: AAA domain
Probab=96.10 E-value=0.02 Score=39.80 Aligned_cols=69 Identities=19% Similarity=0.174 Sum_probs=48.8
Q ss_pred HHHHHHcCCCcEEEEEcCCCCCChhhHHHHhhhccCCCCCCcEEEEeCCChHHHHhh------CCCCceeCCCCCHHH
Q 028606 46 GKLKKQFSGKKFLLFLDDLWNVNYDLWSYLCRPLVESCAPGSKDIITARFTDVATMV------ATTSTYPLECLSDED 117 (206)
Q Consensus 46 ~~l~~~L~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~~gs~IivTTr~~~v~~~~------~~~~~~~l~~L~~~~ 117 (206)
+.+.+....++.+|+||++. ....|......+- +...+.+|++|+++......- |....+.|.||+-.|
T Consensus 52 ~~~~~~~~~~~~~i~iDEiq--~~~~~~~~lk~l~-d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E 126 (128)
T PF13173_consen 52 EYFLELIKPGKKYIFIDEIQ--YLPDWEDALKFLV-DNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFRE 126 (128)
T ss_pred HHHHHhhccCCcEEEEehhh--hhccHHHHHHHHH-HhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHH
Confidence 34444444578889999999 7778888777766 555678999999987776431 112367888988765
No 9
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=96.09 E-value=0.5 Score=37.00 Aligned_cols=111 Identities=15% Similarity=0.094 Sum_probs=65.8
Q ss_pred CCCCCHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHH-----cCCCcEEEEEcCCCCCChhhHHHHhhhccC--CCCCC
Q 028606 14 GGDFDALKVTKSILKSIATDQPVDDNDLNLLQGKLKKQ-----FSGKKFLLFLDDLWNVNYDLWSYLCRPLVE--SCAPG 86 (206)
Q Consensus 14 s~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~l~~~-----L~~kr~LlVLDdv~~~~~~~~~~l~~~l~~--~~~~g 86 (206)
....+..+++..|...+ +.... ..+.......+... ..+++.++|+||++..+...++.+...... +....
T Consensus 79 ~~~~~~~~~l~~i~~~l-G~~~~-~~~~~~~~~~l~~~l~~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~ 156 (269)
T TIGR03015 79 NTRVDAEDLLRMVAADF-GLETE-GRDKAALLRELEDFLIEQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKL 156 (269)
T ss_pred CCCCCHHHHHHHHHHHc-CCCCC-CCCHHHHHHHHHHHHHHHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCe
Confidence 34567888999998887 54432 23333333333332 267889999999985555566666533220 11223
Q ss_pred cEEEEeCCChHHHHhhC----------CCCceeCCCCCHHHHHHHHHHhhc
Q 028606 87 SKDIITARFTDVATMVA----------TTSTYPLECLSDEDCLRILAEQSL 127 (206)
Q Consensus 87 s~IivTTr~~~v~~~~~----------~~~~~~l~~L~~~~~~~Lf~~~af 127 (206)
..|++|.... ...... ....+.+++++.++...++...+-
T Consensus 157 ~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~~~~l~~~l~ 206 (269)
T TIGR03015 157 LQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDREETREYIEHRLE 206 (269)
T ss_pred EEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCHHHHHHHHHHHHH
Confidence 3556665433 222211 123578999999999999887763
No 10
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=95.93 E-value=0.025 Score=39.13 Aligned_cols=85 Identities=11% Similarity=0.114 Sum_probs=59.6
Q ss_pred eeEEEEeCCCCCHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHcCCCc-EEEEEcCCCCC-ChhhHHHHhhhccCCCC
Q 028606 7 LQASTYVGGDFDALKVTKSILKSIATDQPVDDNDLNLLQGKLKKQFSGKK-FLLFLDDLWNV-NYDLWSYLCRPLVESCA 84 (206)
Q Consensus 7 ~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~l~~~L~~kr-~LlVLDdv~~~-~~~~~~~l~~~l~~~~~ 84 (206)
..+|+..+...+...+...|+..+ +.......+...+.+.+.+.+...+ .+||+|++..- +...++.+... . + .
T Consensus 39 ~~~~~~~~~~~~~~~~~~~i~~~l-~~~~~~~~~~~~l~~~~~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l-~-~-~ 114 (131)
T PF13401_consen 39 DVIYVNCPSSRTPRDFAQEILEAL-GLPLKSRQTSDELRSLLIDALDRRRVVLLVIDEADHLFSDEFLEFLRSL-L-N-E 114 (131)
T ss_dssp EEEEEEHHHHSSHHHHHHHHHHHH-T-SSSSTS-HHHHHHHHHHHHHHCTEEEEEEETTHHHHTHHHHHHHHHH-T-C-S
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHh-CccccccCCHHHHHHHHHHHHHhcCCeEEEEeChHhcCCHHHHHHHHHH-H-h-C
Confidence 356888888889999999999999 6555545667778888888887654 59999999743 33445555433 2 2 5
Q ss_pred CCcEEEEeCCC
Q 028606 85 PGSKDIITARF 95 (206)
Q Consensus 85 ~gs~IivTTr~ 95 (206)
.+.++|+..+.
T Consensus 115 ~~~~vvl~G~~ 125 (131)
T PF13401_consen 115 SNIKVVLVGTP 125 (131)
T ss_dssp CBEEEEEEESS
T ss_pred CCCeEEEEECh
Confidence 67777777654
No 11
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=95.31 E-value=0.36 Score=43.71 Aligned_cols=118 Identities=14% Similarity=0.141 Sum_probs=73.1
Q ss_pred eeEEEEeCC-CCCHHHHHHHHHHHhhcCCCCC-------------CCCHHHHHHHHHHHcC--CCcEEEEEcCCCCC-Ch
Q 028606 7 LQASTYVGG-DFDALKVTKSILKSIATDQPVD-------------DNDLNLLQGKLKKQFS--GKKFLLFLDDLWNV-NY 69 (206)
Q Consensus 7 ~~~wv~vs~-~~~~~~i~~~i~~~l~~~~~~~-------------~~~~~~~~~~l~~~L~--~kr~LlVLDdv~~~-~~ 69 (206)
.++|.+... +-+...++..++..+ +.-.++ ..+...+.+.+...+. .+.+.+||||.-.- +.
T Consensus 66 ~v~Wlslde~dndp~rF~~yLi~al-~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~ 144 (894)
T COG2909 66 AVAWLSLDESDNDPARFLSYLIAAL-QQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDP 144 (894)
T ss_pred ceeEeecCCccCCHHHHHHHHHHHH-HHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcc
Confidence 478998877 457889999998888 422221 2233445555555554 35789999996321 44
Q ss_pred hhHHHHhhhccCCCCCCcEEEEeCCChHHHHhh---CCCCceeCC----CCCHHHHHHHHHHhh
Q 028606 70 DLWSYLCRPLVESCAPGSKDIITARFTDVATMV---ATTSTYPLE----CLSDEDCLRILAEQS 126 (206)
Q Consensus 70 ~~~~~l~~~l~~~~~~gs~IivTTr~~~v~~~~---~~~~~~~l~----~L~~~~~~~Lf~~~a 126 (206)
..-+.+...+. ....+-.+|||||+..-...- -......+. .++.+|+-.+|...-
T Consensus 145 ~l~~~l~fLl~-~~P~~l~lvv~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~ 207 (894)
T COG2909 145 ALHEALRFLLK-HAPENLTLVVTSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRG 207 (894)
T ss_pred cHHHHHHHHHH-hCCCCeEEEEEeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcC
Confidence 44444555555 556788999999976532211 112222222 478899999988754
No 12
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=94.76 E-value=1.3 Score=36.38 Aligned_cols=119 Identities=13% Similarity=0.090 Sum_probs=68.3
Q ss_pred eEEEEeCCCCCHHHHHHHHHHHhhc-C-C-CCCCCCHHHHHHHHHHHcC--CCcEEEEEcCCCCC---ChhhHHHHhhhc
Q 028606 8 QASTYVGGDFDALKVTKSILKSIAT-D-Q-PVDDNDLNLLQGKLKKQFS--GKKFLLFLDDLWNV---NYDLWSYLCRPL 79 (206)
Q Consensus 8 ~~wv~vs~~~~~~~i~~~i~~~l~~-~-~-~~~~~~~~~~~~~l~~~L~--~kr~LlVLDdv~~~---~~~~~~~l~~~l 79 (206)
.+||......+...++..|+.++.. . . +....+..+....+.+.+. +++++||||+++.- ....+..+....
T Consensus 77 ~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~ 156 (365)
T TIGR02928 77 TVYVNCQILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRAR 156 (365)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccc
Confidence 4566666666778899999998821 1 1 1222345556666666663 56789999999732 111122222221
Q ss_pred cCCCC--CCcEEEEeCCChHHHHhhC-----C--CCceeCCCCCHHHHHHHHHHhh
Q 028606 80 VESCA--PGSKDIITARFTDVATMVA-----T--TSTYPLECLSDEDCLRILAEQS 126 (206)
Q Consensus 80 ~~~~~--~gs~IivTTr~~~v~~~~~-----~--~~~~~l~~L~~~~~~~Lf~~~a 126 (206)
..... ..-.+|.+|+.......+. . ...+.+++.+.++..+++...+
T Consensus 157 ~~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~ 212 (365)
T TIGR02928 157 SNGDLDNAKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRA 212 (365)
T ss_pred cccCCCCCeEEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHH
Confidence 00111 2334555555443322211 1 2457899999999999999886
No 13
>PRK09087 hypothetical protein; Validated
Probab=93.58 E-value=0.56 Score=36.10 Aligned_cols=68 Identities=10% Similarity=0.084 Sum_probs=45.6
Q ss_pred EEEEEcCCCCC--ChhhHHHHhhhccCCCCCCcEEEEeCCC---------hHHHHhhCCCCceeCCCCCHHHHHHHHHHh
Q 028606 57 FLLFLDDLWNV--NYDLWSYLCRPLVESCAPGSKDIITARF---------TDVATMVATTSTYPLECLSDEDCLRILAEQ 125 (206)
Q Consensus 57 ~LlVLDdv~~~--~~~~~~~l~~~l~~~~~~gs~IivTTr~---------~~v~~~~~~~~~~~l~~L~~~~~~~Lf~~~ 125 (206)
-+|++||+... +...+-.+...+. ..|..||+|++. ..+...+....++++++++.++-..++.+.
T Consensus 89 ~~l~iDDi~~~~~~~~~lf~l~n~~~---~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~ 165 (226)
T PRK09087 89 GPVLIEDIDAGGFDETGLFHLINSVR---QAGTSLLMTSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKL 165 (226)
T ss_pred CeEEEECCCCCCCCHHHHHHHHHHHH---hCCCeEEEECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHH
Confidence 37888999531 2333333333333 346779998873 344455555678999999999999999988
Q ss_pred hc
Q 028606 126 SL 127 (206)
Q Consensus 126 af 127 (206)
+-
T Consensus 166 ~~ 167 (226)
T PRK09087 166 FA 167 (226)
T ss_pred HH
Confidence 83
No 14
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=92.86 E-value=1.8 Score=34.98 Aligned_cols=71 Identities=13% Similarity=0.140 Sum_probs=50.6
Q ss_pred CCcEEEEEcCCCCCChhhHHHHhhhccCCCCCCcEEEEeCCChHHH-Hh-hCCCCceeCCCCCHHHHHHHHHHh
Q 028606 54 GKKFLLFLDDLWNVNYDLWSYLCRPLVESCAPGSKDIITARFTDVA-TM-VATTSTYPLECLSDEDCLRILAEQ 125 (206)
Q Consensus 54 ~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~~gs~IivTTr~~~v~-~~-~~~~~~~~l~~L~~~~~~~Lf~~~ 125 (206)
+++=++|+|++...+...++.+...+. ....++.+|++|.+.+.. +. -.....+.+.++++++....+...
T Consensus 92 ~~~kv~iI~~ad~m~~~a~naLLK~LE-epp~~t~~il~~~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~l~~~ 164 (313)
T PRK05564 92 GDKKVIIIYNSEKMTEQAQNAFLKTIE-EPPKGVFIILLCENLEQILDTIKSRCQIYKLNRLSKEEIEKFISYK 164 (313)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhc-CCCCCeEEEEEeCChHhCcHHHHhhceeeeCCCcCHHHHHHHHHHH
Confidence 445566667665447788999999988 777889999888765422 22 223468999999999988777654
No 15
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=92.59 E-value=0.15 Score=39.94 Aligned_cols=62 Identities=15% Similarity=0.247 Sum_probs=39.2
Q ss_pred CCCCeeEEEEeCCC--CCHHHHHHHHHHHhhcCCCCCCCCHH------HHHHHHHHH-cCCCcEEEEEcCCC
Q 028606 3 DHFDLQASTYVGGD--FDALKVTKSILKSIATDQPVDDNDLN------LLQGKLKKQ-FSGKKFLLFLDDLW 65 (206)
Q Consensus 3 ~~F~~~~wv~vs~~--~~~~~i~~~i~~~l~~~~~~~~~~~~------~~~~~l~~~-L~~kr~LlVLDdv~ 65 (206)
.+|+.++||+++++ +++.++++.+...+...+ .+..... .+....... -.|++.++++|++.
T Consensus 43 ~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~-~~~~~~~~~~~~~~~~~~a~~~~~~G~~vll~iDei~ 113 (249)
T cd01128 43 NHPEVYLIVLLIDERPEEVTDMQRSVKGEVIAST-FDEPPERHVQVAEMVLEKAKRLVEHGKDVVILLDSIT 113 (249)
T ss_pred ccCCeEEEEEEccCCCccHHHHHHHhccEEEEec-CCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHH
Confidence 47999999998887 799999999944431111 1111111 222333322 25899999999985
No 16
>PRK08084 DNA replication initiation factor; Provisional
Probab=91.64 E-value=0.99 Score=34.91 Aligned_cols=103 Identities=18% Similarity=0.178 Sum_probs=60.3
Q ss_pred EEEEEcCCCCC-ChhhHHH-HhhhccCCCCCC-cEEEEeCCCh---------HHHHhhCCCCceeCCCCCHHHHHHHHHH
Q 028606 57 FLLFLDDLWNV-NYDLWSY-LCRPLVESCAPG-SKDIITARFT---------DVATMVATTSTYPLECLSDEDCLRILAE 124 (206)
Q Consensus 57 ~LlVLDdv~~~-~~~~~~~-l~~~l~~~~~~g-s~IivTTr~~---------~v~~~~~~~~~~~l~~L~~~~~~~Lf~~ 124 (206)
-++++||+... ....|+. +...+......| .++|+||+.. .+...+....++.+++++.++-.+++.+
T Consensus 99 dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~ 178 (235)
T PRK08084 99 SLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQL 178 (235)
T ss_pred CEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHHH
Confidence 37899999632 1234543 222222011234 3789998754 3444455567899999999999999988
Q ss_pred hhcCCCCCCCCchhhhcchhhcCCCCCHHHHHHHHhhc
Q 028606 125 QSLGTTDFSNDTEPILGPSDRSSHRMDIEEDNNIEDHQ 162 (206)
Q Consensus 125 ~af~~~~~~~~~~~~lg~~l~~~~~~~~~~w~~~~~~~ 162 (206)
++... +-...+.+...+..+...+...-..+++.+
T Consensus 179 ~a~~~---~~~l~~~v~~~L~~~~~~d~r~l~~~l~~l 213 (235)
T PRK08084 179 RARLR---GFELPEDVGRFLLKRLDREMRTLFMTLDQL 213 (235)
T ss_pred HHHHc---CCCCCHHHHHHHHHhhcCCHHHHHHHHHHH
Confidence 66332 122223344445455555666666666665
No 17
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=91.46 E-value=0.91 Score=34.48 Aligned_cols=103 Identities=18% Similarity=0.153 Sum_probs=55.6
Q ss_pred EEEEEcCCCCCChh-hH-HHHhhhccCCCCCCcEEEEeCCChH---------HHHhhCCCCceeCCCCCHHHHHHHHHHh
Q 028606 57 FLLFLDDLWNVNYD-LW-SYLCRPLVESCAPGSKDIITARFTD---------VATMVATTSTYPLECLSDEDCLRILAEQ 125 (206)
Q Consensus 57 ~LlVLDdv~~~~~~-~~-~~l~~~l~~~~~~gs~IivTTr~~~---------v~~~~~~~~~~~l~~L~~~~~~~Lf~~~ 125 (206)
-+||+||+...... .| +.+...+......+.++|+||+... +...+.....+.+.+++.++...++...
T Consensus 92 ~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~ 171 (226)
T TIGR03420 92 DLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLAWGLVFQLPPLSDEEKIAALQSR 171 (226)
T ss_pred CEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHhcCeeEecCCCCHHHHHHHHHHH
Confidence 38999999732111 23 3344443311123457888887432 2223333457899999999999998875
Q ss_pred hcCCCCCCCCchhhhcchhhcCCCCCHHHHHHHHhhc
Q 028606 126 SLGTTDFSNDTEPILGPSDRSSHRMDIEEDNNIEDHQ 162 (206)
Q Consensus 126 af~~~~~~~~~~~~lg~~l~~~~~~~~~~w~~~~~~~ 162 (206)
+-. .. -.....++ ..+......+..+-.++++..
T Consensus 172 ~~~-~~-~~~~~~~l-~~L~~~~~gn~r~L~~~l~~~ 205 (226)
T TIGR03420 172 AAR-RG-LQLPDEVA-DYLLRHGSRDMGSLMALLDAL 205 (226)
T ss_pred HHH-cC-CCCCHHHH-HHHHHhccCCHHHHHHHHHHH
Confidence 421 11 11222233 333334445566666666555
No 18
>PRK05642 DNA replication initiation factor; Validated
Probab=90.73 E-value=1.4 Score=33.99 Aligned_cols=102 Identities=18% Similarity=0.159 Sum_probs=59.1
Q ss_pred EEEEcCCCCC-ChhhHHH-HhhhccCCCCCCcEEEEeCCChHH---------HHhhCCCCceeCCCCCHHHHHHHHHHhh
Q 028606 58 LLFLDDLWNV-NYDLWSY-LCRPLVESCAPGSKDIITARFTDV---------ATMVATTSTYPLECLSDEDCLRILAEQS 126 (206)
Q Consensus 58 LlVLDdv~~~-~~~~~~~-l~~~l~~~~~~gs~IivTTr~~~v---------~~~~~~~~~~~l~~L~~~~~~~Lf~~~a 126 (206)
++|+||+... ....|+. +...+..-..+|..||+|++...- ...++...++.+++++.++-..++..++
T Consensus 100 ~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka 179 (234)
T PRK05642 100 LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRA 179 (234)
T ss_pred EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHH
Confidence 6789999622 2234443 333332112346778888874332 1222234578999999999999999766
Q ss_pred cCCCCCCCCchhhhcchhhcCCCCCHHHHHHHHhhc
Q 028606 127 LGTTDFSNDTEPILGPSDRSSHRMDIEEDNNIEDHQ 162 (206)
Q Consensus 127 f~~~~~~~~~~~~lg~~l~~~~~~~~~~w~~~~~~~ 162 (206)
.... -...+.+...+..+...+...-..+++.+
T Consensus 180 ~~~~---~~l~~ev~~~L~~~~~~d~r~l~~~l~~l 212 (234)
T PRK05642 180 SRRG---LHLTDEVGHFILTRGTRSMSALFDLLERL 212 (234)
T ss_pred HHcC---CCCCHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 4321 11223344455555556666666666666
No 19
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=90.23 E-value=0.79 Score=40.75 Aligned_cols=83 Identities=20% Similarity=0.154 Sum_probs=58.1
Q ss_pred HHHHHHHHcCCCcEEEEEcCCCCCChhhHHHHhhhccCCCCCCcEEEE--eCCChHH-HHhh-CCCCceeCCCCCHHHHH
Q 028606 44 LQGKLKKQFSGKKFLLFLDDLWNVNYDLWSYLCRPLVESCAPGSKDII--TARFTDV-ATMV-ATTSTYPLECLSDEDCL 119 (206)
Q Consensus 44 ~~~~l~~~L~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~~gs~Iiv--TTr~~~v-~~~~-~~~~~~~l~~L~~~~~~ 119 (206)
.+..+.+.+..++++++.|+.|..+...|+.+...+. ...+...+++ ||++... .... .....+.+.+++.++.+
T Consensus 281 ~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~-~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~ 359 (615)
T TIGR02903 281 LQNKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFE-EGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIA 359 (615)
T ss_pred HHHHHHHHHhhCeEEeecceeccCCcccchhhhhhcc-cCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHH
Confidence 5778889999999999988887555667888887776 5555555555 5554331 1111 11235788999999999
Q ss_pred HHHHHhhc
Q 028606 120 RILAEQSL 127 (206)
Q Consensus 120 ~Lf~~~af 127 (206)
.++.+.+-
T Consensus 360 ~Il~~~a~ 367 (615)
T TIGR02903 360 LIVLNAAE 367 (615)
T ss_pred HHHHHHHH
Confidence 99998763
No 20
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=90.20 E-value=1.2 Score=37.46 Aligned_cols=63 Identities=11% Similarity=0.176 Sum_probs=39.8
Q ss_pred CCCCeeEEEEeCCC--CCHHHHHHHHHHHhhcCCCCCCCCH-----HHHHHHHHHH-cCCCcEEEEEcCCC
Q 028606 3 DHFDLQASTYVGGD--FDALKVTKSILKSIATDQPVDDNDL-----NLLQGKLKKQ-FSGKKFLLFLDDLW 65 (206)
Q Consensus 3 ~~F~~~~wv~vs~~--~~~~~i~~~i~~~l~~~~~~~~~~~-----~~~~~~l~~~-L~~kr~LlVLDdv~ 65 (206)
+||+..+||.++++ .++.++++.|+..+...+....... ..+.+..+.. -.|++.+|++|.+.
T Consensus 195 nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e~Ae~~~~~GkdVVLlIDEit 265 (415)
T TIGR00767 195 NHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIEKAKRLVEHKKDVVILLDSIT 265 (415)
T ss_pred cCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHHHHHHHHHcCCCeEEEEEChh
Confidence 47999999999977 7999999999655422211111111 1122222222 36899999999985
No 21
>PRK08727 hypothetical protein; Validated
Probab=89.87 E-value=2.4 Score=32.69 Aligned_cols=73 Identities=23% Similarity=0.155 Sum_probs=44.8
Q ss_pred cEEEEEcCCCCC-ChhhHHH-HhhhccCCCCCCcEEEEeCCCh---------HHHHhhCCCCceeCCCCCHHHHHHHHHH
Q 028606 56 KFLLFLDDLWNV-NYDLWSY-LCRPLVESCAPGSKDIITARFT---------DVATMVATTSTYPLECLSDEDCLRILAE 124 (206)
Q Consensus 56 r~LlVLDdv~~~-~~~~~~~-l~~~l~~~~~~gs~IivTTr~~---------~v~~~~~~~~~~~l~~L~~~~~~~Lf~~ 124 (206)
--+|||||+... ....|.. +...+......|..||+|++.. .+...++...++.+++++.++-..++.+
T Consensus 94 ~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~ 173 (233)
T PRK08727 94 RSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRE 173 (233)
T ss_pred CCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHH
Confidence 358999998622 1123432 2222220123466799998842 2223333355889999999999999998
Q ss_pred hhcC
Q 028606 125 QSLG 128 (206)
Q Consensus 125 ~af~ 128 (206)
.+..
T Consensus 174 ~a~~ 177 (233)
T PRK08727 174 RAQR 177 (233)
T ss_pred HHHH
Confidence 7743
No 22
>PRK06620 hypothetical protein; Validated
Probab=89.58 E-value=3.6 Score=31.33 Aligned_cols=101 Identities=8% Similarity=-0.063 Sum_probs=56.2
Q ss_pred cEEEEEcCCCCCChhhHHHHhhhccCCCCCCcEEEEeCCChH-------HHHhhCCCCceeCCCCCHHHHHHHHHHhhcC
Q 028606 56 KFLLFLDDLWNVNYDLWSYLCRPLVESCAPGSKDIITARFTD-------VATMVATTSTYPLECLSDEDCLRILAEQSLG 128 (206)
Q Consensus 56 r~LlVLDdv~~~~~~~~~~l~~~l~~~~~~gs~IivTTr~~~-------v~~~~~~~~~~~l~~L~~~~~~~Lf~~~af~ 128 (206)
.-++++||+..-+...+-.+...+. ..|..||+|++... +...+...-++.+++++.++-..++.+.+..
T Consensus 86 ~d~lliDdi~~~~~~~lf~l~N~~~---e~g~~ilits~~~p~~l~l~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~ 162 (214)
T PRK06620 86 YNAFIIEDIENWQEPALLHIFNIIN---EKQKYLLLTSSDKSRNFTLPDLSSRIKSVLSILLNSPDDELIKILIFKHFSI 162 (214)
T ss_pred CCEEEEeccccchHHHHHHHHHHHH---hcCCEEEEEcCCCccccchHHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHH
Confidence 3578899996212222222222222 35778999987322 3333444558999999999988888877632
Q ss_pred CCCCCCCchhhhcchhhcCCCCCHHHHHHHHhhc
Q 028606 129 TTDFSNDTEPILGPSDRSSHRMDIEEDNNIEDHQ 162 (206)
Q Consensus 129 ~~~~~~~~~~~lg~~l~~~~~~~~~~w~~~~~~~ 162 (206)
. +-...+.+...+..+...+...-...++.+
T Consensus 163 -~--~l~l~~ev~~~L~~~~~~d~r~l~~~l~~l 193 (214)
T PRK06620 163 -S--SVTISRQIIDFLLVNLPREYSKIIEILENI 193 (214)
T ss_pred -c--CCCCCHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 1 111222333344344445555555555554
No 23
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=89.36 E-value=0.9 Score=38.02 Aligned_cols=62 Identities=15% Similarity=0.272 Sum_probs=39.3
Q ss_pred CCCCeeEEEEeCCCC--CHHHHHHHHHHHhhcCCCCCCCCHH------HHHHHHHHH-cCCCcEEEEEcCCC
Q 028606 3 DHFDLQASTYVGGDF--DALKVTKSILKSIATDQPVDDNDLN------LLQGKLKKQ-FSGKKFLLFLDDLW 65 (206)
Q Consensus 3 ~~F~~~~wv~vs~~~--~~~~i~~~i~~~l~~~~~~~~~~~~------~~~~~l~~~-L~~kr~LlVLDdv~ 65 (206)
.||++++||.+++++ .+.++++.|.-.+.... .+..... ...+.-+.. -.|++++|++|++-
T Consensus 196 nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st-~d~~~~~~~~~a~~~ie~Ae~~~e~G~dVlL~iDsIt 266 (416)
T PRK09376 196 NHPEVHLIVLLIDERPEEVTDMQRSVKGEVVAST-FDEPAERHVQVAEMVIEKAKRLVEHGKDVVILLDSIT 266 (416)
T ss_pred hcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEEC-CCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEEChH
Confidence 489999999999998 88888888864431121 1111111 112222222 36899999999984
No 24
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=88.12 E-value=0.81 Score=35.02 Aligned_cols=149 Identities=15% Similarity=0.092 Sum_probs=72.5
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhhcCCCCC----CCCHHHHH------------HHHHHHcCCCcEEEEEcCCCCC-Chhh
Q 028606 9 ASTYVGGDFDALKVTKSILKSIATDQPVD----DNDLNLLQ------------GKLKKQFSGKKFLLFLDDLWNV-NYDL 71 (206)
Q Consensus 9 ~wv~vs~~~~~~~i~~~i~~~l~~~~~~~----~~~~~~~~------------~~l~~~L~~kr~LlVLDdv~~~-~~~~ 71 (206)
++++-.....-.-++..|...+ ....++ -.+.++.. ..+++.+.+ -=+|++||+..- ....
T Consensus 37 l~l~G~~G~GKTHLL~Ai~~~~-~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~~~~~~~~~~-~DlL~iDDi~~l~~~~~ 114 (219)
T PF00308_consen 37 LFLYGPSGLGKTHLLQAIANEA-QKQHPGKRVVYLSAEEFIREFADALRDGEIEEFKDRLRS-ADLLIIDDIQFLAGKQR 114 (219)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH-HHHCTTS-EEEEEHHHHHHHHHHHHHTTSHHHHHHHHCT-SSEEEEETGGGGTTHHH
T ss_pred eEEECCCCCCHHHHHHHHHHHH-HhccccccceeecHHHHHHHHHHHHHcccchhhhhhhhc-CCEEEEecchhhcCchH
Confidence 4555555556666777776655 211111 11122221 233444443 346888999632 2233
Q ss_pred HHH-HhhhccCCCCCCcEEEEeCCCh---------HHHHhhCCCCceeCCCCCHHHHHHHHHHhhcCCCCCCCCchhhhc
Q 028606 72 WSY-LCRPLVESCAPGSKDIITARFT---------DVATMVATTSTYPLECLSDEDCLRILAEQSLGTTDFSNDTEPILG 141 (206)
Q Consensus 72 ~~~-l~~~l~~~~~~gs~IivTTr~~---------~v~~~~~~~~~~~l~~L~~~~~~~Lf~~~af~~~~~~~~~~~~lg 141 (206)
|.. +...+..-...|.+||+|+... .+...+...-++++++++.++-..++.+.+-. .... .+ +.+.
T Consensus 115 ~q~~lf~l~n~~~~~~k~li~ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~-~~~~-l~-~~v~ 191 (219)
T PF00308_consen 115 TQEELFHLFNRLIESGKQLILTSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQKKAKE-RGIE-LP-EEVI 191 (219)
T ss_dssp HHHHHHHHHHHHHHTTSEEEEEESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHHHHHH-TT---S--HHHH
T ss_pred HHHHHHHHHHHHHhhCCeEEEEeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHH-hCCC-Cc-HHHH
Confidence 433 2222221123577899998532 23333444558999999999999999988832 1111 22 2333
Q ss_pred chhhcCCCCCHHHHHHHHhhc
Q 028606 142 PSDRSSHRMDIEEDNNIEDHQ 162 (206)
Q Consensus 142 ~~l~~~~~~~~~~w~~~~~~~ 162 (206)
..+..+...+..+...+++++
T Consensus 192 ~~l~~~~~~~~r~L~~~l~~l 212 (219)
T PF00308_consen 192 EYLARRFRRDVRELEGALNRL 212 (219)
T ss_dssp HHHHHHTTSSHHHHHHHHHHH
T ss_pred HHHHHhhcCCHHHHHHHHHHH
Confidence 344444444555555555554
No 25
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=88.07 E-value=2.7 Score=31.67 Aligned_cols=73 Identities=22% Similarity=0.219 Sum_probs=38.1
Q ss_pred CCcEEEEEcCCCCCC------hhhHHHHhhhccC-CCCCCcEEEEeCCChHHHHh--------hCCCCceeCCCCCHHHH
Q 028606 54 GKKFLLFLDDLWNVN------YDLWSYLCRPLVE-SCAPGSKDIITARFTDVATM--------VATTSTYPLECLSDEDC 118 (206)
Q Consensus 54 ~kr~LlVLDdv~~~~------~~~~~~l~~~l~~-~~~~gs~IivTTr~~~v~~~--------~~~~~~~~l~~L~~~~~ 118 (206)
+++++||+||+..-. ......+...+.. .....-.+|+++....+... .+....+.+++++.+++
T Consensus 117 ~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~ 196 (234)
T PF01637_consen 117 GKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNVSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEA 196 (234)
T ss_dssp HCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTEEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHH
T ss_pred CCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHH
Confidence 346999999987322 1222333333331 12334445566555555544 12233589999999999
Q ss_pred HHHHHHhh
Q 028606 119 LRILAEQS 126 (206)
Q Consensus 119 ~~Lf~~~a 126 (206)
.+++...+
T Consensus 197 ~~~~~~~~ 204 (234)
T PF01637_consen 197 REFLKELF 204 (234)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999865
No 26
>PRK13342 recombination factor protein RarA; Reviewed
Probab=87.13 E-value=3.6 Score=34.69 Aligned_cols=70 Identities=21% Similarity=0.378 Sum_probs=45.2
Q ss_pred CCCcEEEEEcCCCCCChhhHHHHhhhccCCCCCCcEEEE--eCCChHHH---HhhCCCCceeCCCCCHHHHHHHHHHhh
Q 028606 53 SGKKFLLFLDDLWNVNYDLWSYLCRPLVESCAPGSKDII--TARFTDVA---TMVATTSTYPLECLSDEDCLRILAEQS 126 (206)
Q Consensus 53 ~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~~gs~Iiv--TTr~~~v~---~~~~~~~~~~l~~L~~~~~~~Lf~~~a 126 (206)
.+++.+|++|+++.-+....+.+...+. .|..+++ ||.+.... .......++.+.+++.++...++.+.+
T Consensus 90 ~g~~~vL~IDEi~~l~~~~q~~LL~~le----~~~iilI~att~n~~~~l~~aL~SR~~~~~~~~ls~e~i~~lL~~~l 164 (413)
T PRK13342 90 AGRRTILFIDEIHRFNKAQQDALLPHVE----DGTITLIGATTENPSFEVNPALLSRAQVFELKPLSEEDIEQLLKRAL 164 (413)
T ss_pred cCCceEEEEechhhhCHHHHHHHHHHhh----cCcEEEEEeCCCChhhhccHHHhccceeeEeCCCCHHHHHHHHHHHH
Confidence 4578899999998544455555655554 2454444 34443211 122223578999999999999998865
No 27
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=86.98 E-value=3.3 Score=34.35 Aligned_cols=72 Identities=17% Similarity=0.146 Sum_probs=51.9
Q ss_pred CCcEEEEEcCCCCCChhhHHHHhhhccCCCCCCcEEEEeCCChH-HHHhh-CCCCceeCCCCCHHHHHHHHHHhh
Q 028606 54 GKKFLLFLDDLWNVNYDLWSYLCRPLVESCAPGSKDIITARFTD-VATMV-ATTSTYPLECLSDEDCLRILAEQS 126 (206)
Q Consensus 54 ~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~~gs~IivTTr~~~-v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~a 126 (206)
+++-++|+||+...+......+...+. .-..++.+|++|.+.+ +...+ .....+.+.+++.++..+++....
T Consensus 140 ~~~kVviIDead~m~~~aanaLLK~LE-epp~~~~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~~ 213 (365)
T PRK07471 140 GGWRVVIVDTADEMNANAANALLKVLE-EPPARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAAG 213 (365)
T ss_pred CCCEEEEEechHhcCHHHHHHHHHHHh-cCCCCeEEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHhc
Confidence 456789999997667777777777776 5455666777776654 33332 234589999999999999998754
No 28
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=86.57 E-value=3.2 Score=36.03 Aligned_cols=74 Identities=19% Similarity=0.286 Sum_probs=52.4
Q ss_pred CCCcEEEEEcCCCCCChhhHHHHhhhccCCCCCCcEEEE-eCCChHHHHhhC-CCCceeCCCCCHHHHHHHHHHhhc
Q 028606 53 SGKKFLLFLDDLWNVNYDLWSYLCRPLVESCAPGSKDII-TARFTDVATMVA-TTSTYPLECLSDEDCLRILAEQSL 127 (206)
Q Consensus 53 ~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~~gs~Iiv-TTr~~~v~~~~~-~~~~~~l~~L~~~~~~~Lf~~~af 127 (206)
.+++-++|+|+++.-+...++.+...+. .......+|+ ||+...+...+. ....+.+++++.++....+...+-
T Consensus 126 ~~~~KVvIIDEa~~Ls~~a~naLLk~LE-epp~~~vfI~aTte~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~ 201 (507)
T PRK06645 126 QGKHKIFIIDEVHMLSKGAFNALLKTLE-EPPPHIIFIFATTEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITK 201 (507)
T ss_pred cCCcEEEEEEChhhcCHHHHHHHHHHHh-hcCCCEEEEEEeCChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHH
Confidence 4567789999998555677888887777 5555666654 445455544332 245789999999999999987773
No 29
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=86.08 E-value=0.83 Score=34.68 Aligned_cols=47 Identities=19% Similarity=0.101 Sum_probs=31.2
Q ss_pred CcEEEEEcCCCCC-ChhhHHHHhhhccCCCCCCcEEEEeCCChHHHHhh
Q 028606 55 KKFLLFLDDLWNV-NYDLWSYLCRPLVESCAPGSKDIITARFTDVATMV 102 (206)
Q Consensus 55 kr~LlVLDdv~~~-~~~~~~~l~~~l~~~~~~gs~IivTTr~~~v~~~~ 102 (206)
..-+++||||... +......+...+. ....++.+||||.++.+...+
T Consensus 158 ~~p~~ilDEvd~~LD~~~~~~l~~~l~-~~~~~~Q~ii~Th~~~~~~~a 205 (220)
T PF02463_consen 158 PSPFLILDEVDAALDEQNRKRLADLLK-ELSKQSQFIITTHNPEMFEDA 205 (220)
T ss_dssp --SEEEEESTTTTS-HHHHHHHHHHHH-HHTTTSEEEEE-S-HHHHTT-
T ss_pred ccccccccccccccccccccccccccc-ccccccccccccccccccccc
Confidence 3457899999743 5666666766666 555678999999999988765
No 30
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=85.86 E-value=2.4 Score=30.77 Aligned_cols=52 Identities=13% Similarity=0.008 Sum_probs=32.4
Q ss_pred HHHHHHHcCCC-cEEEEEcCCCCC---ChhhHHHHhhhccCCCCCCcEEEEeCCChH
Q 028606 45 QGKLKKQFSGK-KFLLFLDDLWNV---NYDLWSYLCRPLVESCAPGSKDIITARFTD 97 (206)
Q Consensus 45 ~~~l~~~L~~k-r~LlVLDdv~~~---~~~~~~~l~~~l~~~~~~gs~IivTTr~~~ 97 (206)
.+..++.+... -=|+|||++-.. ..-..+.+...+. ....+.-+|+|.|+..
T Consensus 84 ~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~-~rp~~~evIlTGr~~p 139 (159)
T cd00561 84 WAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLK-AKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHH-cCCCCCEEEEECCCCC
Confidence 34445555544 459999998521 2233455555665 5556778999999755
No 31
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=85.24 E-value=5.9 Score=33.89 Aligned_cols=72 Identities=8% Similarity=0.061 Sum_probs=43.4
Q ss_pred cEEEEEcCCCCCC--hhhHHHHhhhccCCCCCCcEEEEeCCChH---------HHHhhCCCCceeCCCCCHHHHHHHHHH
Q 028606 56 KFLLFLDDLWNVN--YDLWSYLCRPLVESCAPGSKDIITARFTD---------VATMVATTSTYPLECLSDEDCLRILAE 124 (206)
Q Consensus 56 r~LlVLDdv~~~~--~~~~~~l~~~l~~~~~~gs~IivTTr~~~---------v~~~~~~~~~~~l~~L~~~~~~~Lf~~ 124 (206)
.-+|||||+.... ...-+.+...+......|..||+|+.... +...+...-+..+++++.++-..++.+
T Consensus 207 ~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~ 286 (450)
T PRK14087 207 NDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKK 286 (450)
T ss_pred CCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHH
Confidence 3488999996321 11223333333211234557888866432 222233345788999999999999998
Q ss_pred hhc
Q 028606 125 QSL 127 (206)
Q Consensus 125 ~af 127 (206)
++-
T Consensus 287 ~~~ 289 (450)
T PRK14087 287 EIK 289 (450)
T ss_pred HHH
Confidence 884
No 32
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=84.75 E-value=7.1 Score=34.75 Aligned_cols=70 Identities=9% Similarity=0.078 Sum_probs=42.8
Q ss_pred EEEEcCCCCC-ChhhHH-HHhhhccCCCCCCcEEEEeCCCh---------HHHHhhCCCCceeCCCCCHHHHHHHHHHhh
Q 028606 58 LLFLDDLWNV-NYDLWS-YLCRPLVESCAPGSKDIITARFT---------DVATMVATTSTYPLECLSDEDCLRILAEQS 126 (206)
Q Consensus 58 LlVLDdv~~~-~~~~~~-~l~~~l~~~~~~gs~IivTTr~~---------~v~~~~~~~~~~~l~~L~~~~~~~Lf~~~a 126 (206)
+|+|||+... ....|+ .+...+..-...|..||+||+.. .+...+...-++.++..+.+.-..++.+++
T Consensus 380 LLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka 459 (617)
T PRK14086 380 ILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKA 459 (617)
T ss_pred EEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHH
Confidence 7899999632 112222 22222221123356688888752 122333345688999999999999999887
Q ss_pred c
Q 028606 127 L 127 (206)
Q Consensus 127 f 127 (206)
-
T Consensus 460 ~ 460 (617)
T PRK14086 460 V 460 (617)
T ss_pred H
Confidence 3
No 33
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=84.67 E-value=21 Score=33.68 Aligned_cols=119 Identities=11% Similarity=0.035 Sum_probs=64.2
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHcC---CCcEEEEEcCCCCCChhhHHHHhhhccCCCCC
Q 028606 9 ASTYVGGDFDALKVTKSILKSIATDQPVDDNDLNLLQGKLKKQFS---GKKFLLFLDDLWNVNYDLWSYLCRPLVESCAP 85 (206)
Q Consensus 9 ~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~l~~~L~---~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~~ 85 (206)
+.|....-.+...+...|..++.+..+.......+..+.+...+. +...+||||+|..-....=+.|...+......
T Consensus 820 VYINCm~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s 899 (1164)
T PTZ00112 820 FEINGMNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKI 899 (1164)
T ss_pred EEEeCCccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhcc
Confidence 455445556778888888888833333334444455566666552 22468999998621110101122112101123
Q ss_pred CcEEEE--eCCChH--------HHHhhCCCCceeCCCCCHHHHHHHHHHhhcC
Q 028606 86 GSKDII--TARFTD--------VATMVATTSTYPLECLSDEDCLRILAEQSLG 128 (206)
Q Consensus 86 gs~Iiv--TTr~~~--------v~~~~~~~~~~~l~~L~~~~~~~Lf~~~af~ 128 (206)
+++|++ +|..-+ +...++. ..+...+.+.++..+++..++-.
T Consensus 900 ~SKLiLIGISNdlDLperLdPRLRSRLg~-eeIvF~PYTaEQL~dILk~RAe~ 951 (1164)
T PTZ00112 900 NSKLVLIAISNTMDLPERLIPRCRSRLAF-GRLVFSPYKGDEIEKIIKERLEN 951 (1164)
T ss_pred CCeEEEEEecCchhcchhhhhhhhhcccc-ccccCCCCCHHHHHHHHHHHHHh
Confidence 555554 333212 2222222 23667999999999999998843
No 34
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=83.91 E-value=19 Score=30.25 Aligned_cols=108 Identities=18% Similarity=0.140 Sum_probs=66.9
Q ss_pred eEEEEeCCCCCHHHHHHHHHHHhhcCC---C--CC-CCCHHHHHHHHHHHc---CCCcEEEEEcCCCCCChhhHHHHhhh
Q 028606 8 QASTYVGGDFDALKVTKSILKSIATDQ---P--VD-DNDLNLLQGKLKKQF---SGKKFLLFLDDLWNVNYDLWSYLCRP 78 (206)
Q Consensus 8 ~~wv~vs~~~~~~~i~~~i~~~l~~~~---~--~~-~~~~~~~~~~l~~~L---~~kr~LlVLDdv~~~~~~~~~~l~~~ 78 (206)
..-|.-.+...-..+++.+.+.+ ... . .+ ..+..++.+.++... ..++..|+||.|. ....|+.....
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~-~~~~iy~~~~d~~~~~~~l~d~~~~~~~~~~~~~~yifLDEIq--~v~~W~~~lk~ 115 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGL-LEEIIYINFDDLRLDRIELLDLLRAYIELKEREKSYIFLDEIQ--NVPDWERALKY 115 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhC-CcceEEEEecchhcchhhHHHHHHHHHHhhccCCceEEEeccc--CchhHHHHHHH
Confidence 34444445555666666666655 332 0 11 112222233333332 2367899999999 88899998888
Q ss_pred ccCCCCCCcEEEEeCCChHHHHh------hCCCCceeCCCCCHHHHHH
Q 028606 79 LVESCAPGSKDIITARFTDVATM------VATTSTYPLECLSDEDCLR 120 (206)
Q Consensus 79 l~~~~~~gs~IivTTr~~~v~~~------~~~~~~~~l~~L~~~~~~~ 120 (206)
+. +.+.. +|++|+.+...... .|....+.+-||+-.|-..
T Consensus 116 l~-d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~ 161 (398)
T COG1373 116 LY-DRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLK 161 (398)
T ss_pred HH-ccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHh
Confidence 87 66656 89999887665422 2345578999999888765
No 35
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=83.81 E-value=4.9 Score=34.94 Aligned_cols=73 Identities=14% Similarity=0.162 Sum_probs=50.4
Q ss_pred CCcEEEEEcCCCCCChhhHHHHhhhccCCCCCCcEEEEeCCC-hHHHHhh-CCCCceeCCCCCHHHHHHHHHHhhc
Q 028606 54 GKKFLLFLDDLWNVNYDLWSYLCRPLVESCAPGSKDIITARF-TDVATMV-ATTSTYPLECLSDEDCLRILAEQSL 127 (206)
Q Consensus 54 ~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~~gs~IivTTr~-~~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~af 127 (206)
+++-++|+|+++..+...++.+...+. .......+|++|.. ..+...+ .....+.+.+++.++....+.+.+-
T Consensus 115 ~~~kVVIIDEad~ls~~a~naLLk~LE-ep~~~t~~Il~t~~~~kl~~~I~SRc~~~~f~~ls~~el~~~L~~i~~ 189 (504)
T PRK14963 115 GGRKVYILDEAHMMSKSAFNALLKTLE-EPPEHVIFILATTEPEKMPPTILSRTQHFRFRRLTEEEIAGKLRRLLE 189 (504)
T ss_pred CCCeEEEEECccccCHHHHHHHHHHHH-hCCCCEEEEEEcCChhhCChHHhcceEEEEecCCCHHHHHHHHHHHHH
Confidence 566789999998556667888887776 44455565555543 3333322 2245799999999999999988763
No 36
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=82.12 E-value=8.2 Score=32.41 Aligned_cols=84 Identities=23% Similarity=0.347 Sum_probs=53.3
Q ss_pred CCHHHHHHHHHH-HcCCCcEEEEEcCCCCCChhhHHHHhhhccCCCCCCcEEEE--eCCChH---HHHhhCCCCceeCCC
Q 028606 39 NDLNLLQGKLKK-QFSGKKFLLFLDDLWNVNYDLWSYLCRPLVESCAPGSKDII--TARFTD---VATMVATTSTYPLEC 112 (206)
Q Consensus 39 ~~~~~~~~~l~~-~L~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~~gs~Iiv--TTr~~~---v~~~~~~~~~~~l~~ 112 (206)
.++.++.+.-++ ...|++.+|++|.|-.=+..+=+-+. | .-..|.-|+| ||.|.. .....+...++.+++
T Consensus 87 kdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~lL---p-~vE~G~iilIGATTENPsF~ln~ALlSR~~vf~lk~ 162 (436)
T COG2256 87 KDLREIIEEARKNRLLGRRTILFLDEIHRFNKAQQDALL---P-HVENGTIILIGATTENPSFELNPALLSRARVFELKP 162 (436)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEEehhhhcChhhhhhhh---h-hhcCCeEEEEeccCCCCCeeecHHHhhhhheeeeec
Confidence 344445555533 34589999999999633444433333 3 3446877766 455443 123334467999999
Q ss_pred CCHHHHHHHHHHhh
Q 028606 113 LSDEDCLRILAEQS 126 (206)
Q Consensus 113 L~~~~~~~Lf~~~a 126 (206)
|+.++...++.+.+
T Consensus 163 L~~~di~~~l~ra~ 176 (436)
T COG2256 163 LSSEDIKKLLKRAL 176 (436)
T ss_pred CCHHHHHHHHHHHH
Confidence 99999999999844
No 37
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=81.14 E-value=9.2 Score=31.65 Aligned_cols=72 Identities=13% Similarity=0.184 Sum_probs=49.1
Q ss_pred CCcEEEEEcCCCCCChhhHHHHhhhccCCCCCCcEEEEeCCChH-HHHh-hCCCCceeCCCCCHHHHHHHHHHhh
Q 028606 54 GKKFLLFLDDLWNVNYDLWSYLCRPLVESCAPGSKDIITARFTD-VATM-VATTSTYPLECLSDEDCLRILAEQS 126 (206)
Q Consensus 54 ~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~~gs~IivTTr~~~-v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~a 126 (206)
+++-++|+|++...+...++.+...+. ......++|++|.+.+ +... .+....+++.+++.++..+.+...+
T Consensus 118 ~~~kviIIDEa~~l~~~a~naLLk~lE-e~~~~~~fIl~t~~~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~ 191 (363)
T PRK14961 118 SRFKVYLIDEVHMLSRHSFNALLKTLE-EPPQHIKFILATTDVEKIPKTILSRCLQFKLKIISEEKIFNFLKYIL 191 (363)
T ss_pred CCceEEEEEChhhcCHHHHHHHHHHHh-cCCCCeEEEEEcCChHhhhHHHHhhceEEeCCCCCHHHHHHHHHHHH
Confidence 445689999997545556777777776 5555667777765433 3332 2234579999999999888887755
No 38
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=81.13 E-value=6.1 Score=31.93 Aligned_cols=72 Identities=14% Similarity=0.147 Sum_probs=44.8
Q ss_pred CCcEEEEEcCCCCCChhhHHHHhhhccCCCCCCcEEEEeCCChH-HHHhh-CCCCceeCCCCCHHHHHHHHHHhh
Q 028606 54 GKKFLLFLDDLWNVNYDLWSYLCRPLVESCAPGSKDIITARFTD-VATMV-ATTSTYPLECLSDEDCLRILAEQS 126 (206)
Q Consensus 54 ~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~~gs~IivTTr~~~-v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~a 126 (206)
+.+-+||+||+..-.......+...+. ....++++|+||.+.. +.... .....+.+.+++.++...++...+
T Consensus 124 ~~~~vlilDe~~~l~~~~~~~L~~~le-~~~~~~~~Il~~~~~~~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~ 197 (337)
T PRK12402 124 ADYKTILLDNAEALREDAQQALRRIME-QYSRTCRFIIATRQPSKLIPPIRSRCLPLFFRAPTDDELVDVLESIA 197 (337)
T ss_pred CCCcEEEEeCcccCCHHHHHHHHHHHH-hccCCCeEEEEeCChhhCchhhcCCceEEEecCCCHHHHHHHHHHHH
Confidence 344589999996433344455555554 3445577888775432 22222 223467889999999888888765
No 39
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=80.68 E-value=10 Score=34.63 Aligned_cols=69 Identities=26% Similarity=0.365 Sum_probs=44.4
Q ss_pred CCcEEEEEcCCCCCChhhHHHHhhhccCCCCCCcEEEEe--CCChH--HHH-hhCCCCceeCCCCCHHHHHHHHHHhh
Q 028606 54 GKKFLLFLDDLWNVNYDLWSYLCRPLVESCAPGSKDIIT--ARFTD--VAT-MVATTSTYPLECLSDEDCLRILAEQS 126 (206)
Q Consensus 54 ~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~~gs~IivT--Tr~~~--v~~-~~~~~~~~~l~~L~~~~~~~Lf~~~a 126 (206)
+++.+++|||++.-+....+.+...+. .|+.+++. |.+.. +.. ......++.+++++.++...++.+.+
T Consensus 108 ~~~~IL~IDEIh~Ln~~qQdaLL~~lE----~g~IiLI~aTTenp~~~l~~aL~SR~~v~~l~pLs~edi~~IL~~~l 181 (725)
T PRK13341 108 GKRTILFIDEVHRFNKAQQDALLPWVE----NGTITLIGATTENPYFEVNKALVSRSRLFRLKSLSDEDLHQLLKRAL 181 (725)
T ss_pred CCceEEEEeChhhCCHHHHHHHHHHhc----CceEEEEEecCCChHhhhhhHhhccccceecCCCCHHHHHHHHHHHH
Confidence 467799999997435555666655444 35555553 44432 221 12224579999999999999998766
No 40
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=80.40 E-value=33 Score=28.59 Aligned_cols=119 Identities=17% Similarity=0.129 Sum_probs=74.4
Q ss_pred eEEEEeCCCCCHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHcC--CCcEEEEEcCCCCC-ChhhHHHHhhhccCCCC
Q 028606 8 QASTYVGGDFDALKVTKSILKSIATDQPVDDNDLNLLQGKLKKQFS--GKKFLLFLDDLWNV-NYDLWSYLCRPLVESCA 84 (206)
Q Consensus 8 ~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~l~~~L~--~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~~~ 84 (206)
.+.|..-...+..+++..|+..+ +..+.......+..+.+.+.+. ++.+++|||++..- +... +.+-..+.....
T Consensus 75 ~~yINc~~~~t~~~i~~~i~~~~-~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~-~~LY~L~r~~~~ 152 (366)
T COG1474 75 VVYINCLELRTPYQVLSKILNKL-GKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDG-EVLYSLLRAPGE 152 (366)
T ss_pred eEEEeeeeCCCHHHHHHHHHHHc-CCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccc-hHHHHHHhhccc
Confidence 56777777889999999999999 6555556667777888888885 47899999998632 1110 222222220111
Q ss_pred CCcE--EEEeCCChHHHHhhCC-------CCceeCCCCCHHHHHHHHHHhhcC
Q 028606 85 PGSK--DIITARFTDVATMVAT-------TSTYPLECLSDEDCLRILAEQSLG 128 (206)
Q Consensus 85 ~gs~--IivTTr~~~v~~~~~~-------~~~~~l~~L~~~~~~~Lf~~~af~ 128 (206)
..++ ||..+.+-.....+.. ...+..++=+.++-.+++...+-.
T Consensus 153 ~~~~v~vi~i~n~~~~~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~ 205 (366)
T COG1474 153 NKVKVSIIAVSNDDKFLDYLDPRVKSSLGPSEIVFPPYTAEELYDILRERVEE 205 (366)
T ss_pred cceeEEEEEEeccHHHHHHhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHh
Confidence 2443 3444444443333221 123677888889999999888743
No 41
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=80.22 E-value=13 Score=34.20 Aligned_cols=72 Identities=10% Similarity=0.161 Sum_probs=51.0
Q ss_pred CCcEEEEEcCCCCCChhhHHHHhhhccCCCCCCcEEEEeCCChH-HHHh-hCCCCceeCCCCCHHHHHHHHHHhh
Q 028606 54 GKKFLLFLDDLWNVNYDLWSYLCRPLVESCAPGSKDIITARFTD-VATM-VATTSTYPLECLSDEDCLRILAEQS 126 (206)
Q Consensus 54 ~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~~gs~IivTTr~~~-v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~a 126 (206)
++.-++|||++...+...+..|...+. .-....++|++|++.+ +... .+....++++.++.++..+.+.+.+
T Consensus 118 gr~KVIIIDEah~LT~~A~NALLKtLE-EPP~~v~FILaTtd~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il 191 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNHAFNAMLKTLE-EPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERIL 191 (830)
T ss_pred CCceEEEEeChhhCCHHHHHHHHHHHH-hcCCCeEEEEEECChhhccchhhhheEEEecCCcCHHHHHHHHHHHH
Confidence 445578899997556666888887776 5556778888777654 3222 2224579999999999988888765
No 42
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=80.02 E-value=21 Score=26.21 Aligned_cols=71 Identities=18% Similarity=0.221 Sum_probs=48.3
Q ss_pred CCcEEEEEcCCCCCChhhHHHHhhhccCCCCCCcEEEEeCCCh-HHHHhh-CCCCceeCCCCCHHHHHHHHHHh
Q 028606 54 GKKFLLFLDDLWNVNYDLWSYLCRPLVESCAPGSKDIITARFT-DVATMV-ATTSTYPLECLSDEDCLRILAEQ 125 (206)
Q Consensus 54 ~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~~gs~IivTTr~~-~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~ 125 (206)
+.+-++|+|++...+....+.+...+. .....+.+|++|++. .+...+ .....+.+.+++.++..+.+...
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le-~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~~~l~~~ 167 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLE-EPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALLQWLIRQ 167 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhc-CCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHHHHHHHc
Confidence 456689999987545566777777776 555566677776643 222222 22358899999999988888775
No 43
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=78.43 E-value=8.8 Score=31.70 Aligned_cols=71 Identities=14% Similarity=0.148 Sum_probs=47.8
Q ss_pred CCcEEEEEcCCCCCChhhHHHHhhhccCCCCCCcEEE-EeCCChHHHHhhC-CCCceeCCCCCHHHHHHHHHHh
Q 028606 54 GKKFLLFLDDLWNVNYDLWSYLCRPLVESCAPGSKDI-ITARFTDVATMVA-TTSTYPLECLSDEDCLRILAEQ 125 (206)
Q Consensus 54 ~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~~gs~Ii-vTTr~~~v~~~~~-~~~~~~l~~L~~~~~~~Lf~~~ 125 (206)
+++-++|+|++...+....+.+...+. ....+..+| +|++...+...+. ....+++.+++.++...++...
T Consensus 140 g~~rVviIDeAd~l~~~aanaLLk~LE-Epp~~~~fiLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~ 212 (351)
T PRK09112 140 GNWRIVIIDPADDMNRNAANAILKTLE-EPPARALFILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHL 212 (351)
T ss_pred CCceEEEEEchhhcCHHHHHHHHHHHh-cCCCCceEEEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHh
Confidence 466789999997666666777777776 433445544 4444433433322 2458999999999999999874
No 44
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=78.21 E-value=12 Score=30.54 Aligned_cols=71 Identities=11% Similarity=0.123 Sum_probs=49.8
Q ss_pred CCcEEEEEcCCCCCChhhHHHHhhhccCCCCCCcEEEEeCCChH-HHHh-hCCCCceeCCCCCHHHHHHHHHHh
Q 028606 54 GKKFLLFLDDLWNVNYDLWSYLCRPLVESCAPGSKDIITARFTD-VATM-VATTSTYPLECLSDEDCLRILAEQ 125 (206)
Q Consensus 54 ~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~~gs~IivTTr~~~-v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~ 125 (206)
+++=.+|+|++...+......+...+. .-..++.+|++|.+.+ +... .+....+.+.+++.++..+.+...
T Consensus 105 ~~~kv~iI~~a~~m~~~aaNaLLK~LE-EPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~~~L~~~ 177 (328)
T PRK05707 105 GGRKVVLIEPAEAMNRNAANALLKSLE-EPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESLQWLQQA 177 (328)
T ss_pred CCCeEEEECChhhCCHHHHHHHHHHHh-CCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHHHHHHHh
Confidence 344445679997667777777877776 4445777777777654 4433 233467999999999999888765
No 45
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=76.68 E-value=14 Score=31.08 Aligned_cols=71 Identities=15% Similarity=0.160 Sum_probs=47.3
Q ss_pred CCcEEEEEcCCCCCChhhHHHHhhhccCCCCCCcEEEEeCCCh-HHHHhh-CCCCceeCCCCCHHHHHHHHHHh
Q 028606 54 GKKFLLFLDDLWNVNYDLWSYLCRPLVESCAPGSKDIITARFT-DVATMV-ATTSTYPLECLSDEDCLRILAEQ 125 (206)
Q Consensus 54 ~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~~gs~IivTTr~~-~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~ 125 (206)
+++-++++|++...+......+...+. ....+..+|++|.+. .+...+ +....+.+.+++.++....+...
T Consensus 116 ~~~kViiIDead~m~~~aanaLLk~LE-ep~~~~~fIL~a~~~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~~ 188 (394)
T PRK07940 116 GRWRIVVIEDADRLTERAANALLKAVE-EPPPRTVWLLCAPSPEDVLPTIRSRCRHVALRTPSVEAVAEVLVRR 188 (394)
T ss_pred CCcEEEEEechhhcCHHHHHHHHHHhh-cCCCCCeEEEEECChHHChHHHHhhCeEEECCCCCHHHHHHHHHHh
Confidence 445578889997555556666766665 445566666666553 444333 23468999999999998888743
No 46
>PLN03025 replication factor C subunit; Provisional
Probab=76.32 E-value=22 Score=28.81 Aligned_cols=72 Identities=14% Similarity=0.158 Sum_probs=45.8
Q ss_pred CCcEEEEEcCCCCCChhhHHHHhhhccCCCCCCcEEEEeCCChH-HHHh-hCCCCceeCCCCCHHHHHHHHHHhh
Q 028606 54 GKKFLLFLDDLWNVNYDLWSYLCRPLVESCAPGSKDIITARFTD-VATM-VATTSTYPLECLSDEDCLRILAEQS 126 (206)
Q Consensus 54 ~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~~gs~IivTTr~~~-v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~a 126 (206)
++.-+++||++...+...-..+...+. .....+++|+++.... +... -.....+++++++.++....+...+
T Consensus 98 ~~~kviiiDE~d~lt~~aq~aL~~~lE-~~~~~t~~il~~n~~~~i~~~L~SRc~~i~f~~l~~~~l~~~L~~i~ 171 (319)
T PLN03025 98 GRHKIVILDEADSMTSGAQQALRRTME-IYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLMKVV 171 (319)
T ss_pred CCeEEEEEechhhcCHHHHHHHHHHHh-cccCCceEEEEeCCccccchhHHHhhhcccCCCCCHHHHHHHHHHHH
Confidence 345689999997544444455555554 4345677777775432 2111 1123578999999999988888766
No 47
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=76.07 E-value=15 Score=29.86 Aligned_cols=72 Identities=13% Similarity=0.177 Sum_probs=46.8
Q ss_pred CCcEEEEEcCCCCCChhhHHHHhhhccCCCCCCcEEEEeCCChH-HHHhh-CCCCceeCCCCCHHHHHHHHHHhh
Q 028606 54 GKKFLLFLDDLWNVNYDLWSYLCRPLVESCAPGSKDIITARFTD-VATMV-ATTSTYPLECLSDEDCLRILAEQS 126 (206)
Q Consensus 54 ~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~~gs~IivTTr~~~-v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~a 126 (206)
+++-++|+|++..-+......+...+. .......+|++|.+.. +...+ .....+.+.++++++....+...+
T Consensus 116 ~~~~vviidea~~l~~~~~~~Ll~~le-~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~ 189 (355)
T TIGR02397 116 GKYKVYIIDEVHMLSKSAFNALLKTLE-EPPEHVVFILATTEPHKIPATILSRCQRFDFKRIPLEDIVERLKKIL 189 (355)
T ss_pred CCceEEEEeChhhcCHHHHHHHHHHHh-CCccceeEEEEeCCHHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHH
Confidence 455588899986334455667776665 4445677777765544 22222 223568888999998888887765
No 48
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=75.51 E-value=12 Score=27.68 Aligned_cols=53 Identities=21% Similarity=0.117 Sum_probs=32.8
Q ss_pred HHHHHHHHcCCCc-EEEEEcCCCCC---ChhhHHHHhhhccCCCCCCcEEEEeCCChH
Q 028606 44 LQGKLKKQFSGKK-FLLFLDDLWNV---NYDLWSYLCRPLVESCAPGSKDIITARFTD 97 (206)
Q Consensus 44 ~~~~l~~~L~~kr-~LlVLDdv~~~---~~~~~~~l~~~l~~~~~~gs~IivTTr~~~ 97 (206)
..+..++.+...+ =|+|||.+-.. ..-..+.+...+. ....+.-||+|-|+..
T Consensus 85 ~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~-~rp~~~evVlTGR~~p 141 (173)
T TIGR00708 85 AWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQ-ERPGHQHVIITGRGCP 141 (173)
T ss_pred HHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHH-hCCCCCEEEEECCCCC
Confidence 3445555565554 59999988411 2222345555555 5556778999999764
No 49
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=75.38 E-value=21 Score=32.27 Aligned_cols=73 Identities=11% Similarity=0.158 Sum_probs=49.8
Q ss_pred CCCcEEEEEcCCCCCChhhHHHHhhhccCCCCCCcEEEEeCC-ChHHHHhh-CCCCceeCCCCCHHHHHHHHHHhh
Q 028606 53 SGKKFLLFLDDLWNVNYDLWSYLCRPLVESCAPGSKDIITAR-FTDVATMV-ATTSTYPLECLSDEDCLRILAEQS 126 (206)
Q Consensus 53 ~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~~gs~IivTTr-~~~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~a 126 (206)
.++.-++|+|++...+...++.|...+. .-..+.++|++|. ...+...+ +....+.++.++.++..+.+.+.+
T Consensus 122 ~gr~KViIIDEah~Ls~~AaNALLKTLE-EPP~~v~FILaTtep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il 196 (700)
T PRK12323 122 AGRFKVYMIDEVHMLTNHAFNAMLKTLE-EPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAIL 196 (700)
T ss_pred cCCceEEEEEChHhcCHHHHHHHHHhhc-cCCCCceEEEEeCChHhhhhHHHHHHHhcccCCCChHHHHHHHHHHH
Confidence 4556689999997666777888887776 4445556555555 44444332 224578999999999888877655
No 50
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=75.21 E-value=16 Score=30.79 Aligned_cols=68 Identities=19% Similarity=0.209 Sum_probs=42.9
Q ss_pred cEEEEEcCCCCC--C---hhhHHHHhhhccCCCCCCcEEEEeCCC---------hHHHHhhCCCCceeCCCCCHHHHHHH
Q 028606 56 KFLLFLDDLWNV--N---YDLWSYLCRPLVESCAPGSKDIITARF---------TDVATMVATTSTYPLECLSDEDCLRI 121 (206)
Q Consensus 56 r~LlVLDdv~~~--~---~~~~~~l~~~l~~~~~~gs~IivTTr~---------~~v~~~~~~~~~~~l~~L~~~~~~~L 121 (206)
-=++++||++.- . ..++-.+...+. ..|..||+|++. ..+...+...-++.+++++.+....+
T Consensus 176 ~dlllIDDiq~l~gk~~~qeefFh~FN~l~---~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~ai 252 (408)
T COG0593 176 LDLLLIDDIQFLAGKERTQEEFFHTFNALL---ENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAI 252 (408)
T ss_pred cCeeeechHhHhcCChhHHHHHHHHHHHHH---hcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHH
Confidence 338889999631 1 122222222232 234489999853 23334444556899999999999999
Q ss_pred HHHhh
Q 028606 122 LAEQS 126 (206)
Q Consensus 122 f~~~a 126 (206)
+..++
T Consensus 253 L~kka 257 (408)
T COG0593 253 LRKKA 257 (408)
T ss_pred HHHHH
Confidence 99876
No 51
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=75.18 E-value=13 Score=27.91 Aligned_cols=53 Identities=19% Similarity=0.070 Sum_probs=33.6
Q ss_pred HHHHHHHHcCCC-cEEEEEcCCCCC---ChhhHHHHhhhccCCCCCCcEEEEeCCChH
Q 028606 44 LQGKLKKQFSGK-KFLLFLDDLWNV---NYDLWSYLCRPLVESCAPGSKDIITARFTD 97 (206)
Q Consensus 44 ~~~~l~~~L~~k-r~LlVLDdv~~~---~~~~~~~l~~~l~~~~~~gs~IivTTr~~~ 97 (206)
..+..++.+... -=|+|||.+-.. ..-..+.+...+. ....+.-||+|-|+..
T Consensus 103 ~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~-~rp~~~evVlTGR~~p 159 (191)
T PRK05986 103 GWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALN-ARPGMQHVVITGRGAP 159 (191)
T ss_pred HHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHH-cCCCCCEEEEECCCCC
Confidence 344555666554 459999998521 2222455666665 5556779999999764
No 52
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=74.53 E-value=24 Score=29.09 Aligned_cols=76 Identities=14% Similarity=0.061 Sum_probs=44.8
Q ss_pred CCcEEEEEcCCCCC-----------Chh---hHHHHhhhccC-CCCCCcEEEEeCCChHHH-----HhhCCCCceeCCCC
Q 028606 54 GKKFLLFLDDLWNV-----------NYD---LWSYLCRPLVE-SCAPGSKDIITARFTDVA-----TMVATTSTYPLECL 113 (206)
Q Consensus 54 ~kr~LlVLDdv~~~-----------~~~---~~~~l~~~l~~-~~~~gs~IivTTr~~~v~-----~~~~~~~~~~l~~L 113 (206)
....+|+||+++.- +.. .+..+...+.. ....+.+||.||+..+.. ........+.+...
T Consensus 214 ~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P 293 (364)
T TIGR01242 214 KAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLP 293 (364)
T ss_pred cCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCc
Confidence 34689999998621 011 12222222220 123467788888754322 11112457889999
Q ss_pred CHHHHHHHHHHhhcCC
Q 028606 114 SDEDCLRILAEQSLGT 129 (206)
Q Consensus 114 ~~~~~~~Lf~~~af~~ 129 (206)
+.++..++|..++.+.
T Consensus 294 ~~~~r~~Il~~~~~~~ 309 (364)
T TIGR01242 294 DFEGRLEILKIHTRKM 309 (364)
T ss_pred CHHHHHHHHHHHHhcC
Confidence 9999999999887443
No 53
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=74.17 E-value=6.3 Score=29.89 Aligned_cols=42 Identities=21% Similarity=0.279 Sum_probs=24.4
Q ss_pred HcCCC---cEEEEEcCCCCCChhhHHHHhhhccCCCCCCcEEEEeCCCh
Q 028606 51 QFSGK---KFLLFLDDLWNVNYDLWSYLCRPLVESCAPGSKDIITARFT 96 (206)
Q Consensus 51 ~L~~k---r~LlVLDdv~~~~~~~~~~l~~~l~~~~~~gs~IivTTr~~ 96 (206)
+++|+ ..+|++|..++.+..++..+... .+.|||||++--..
T Consensus 112 ~iRGrt~~~~~iIvDEaQN~t~~~~k~ilTR----~g~~skii~~GD~~ 156 (205)
T PF02562_consen 112 FIRGRTFDNAFIIVDEAQNLTPEELKMILTR----IGEGSKIIITGDPS 156 (205)
T ss_dssp GGTT--B-SEEEEE-SGGG--HHHHHHHHTT----B-TT-EEEEEE---
T ss_pred hhcCccccceEEEEecccCCCHHHHHHHHcc----cCCCcEEEEecCce
Confidence 35665 56999999986666677666544 44799999987543
No 54
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=73.87 E-value=17 Score=29.98 Aligned_cols=71 Identities=17% Similarity=0.191 Sum_probs=51.0
Q ss_pred CCcEEEEEcCCCCCChhhHHHHhhhccCCCCCCcEEEEeCCC-hHHHHh-hCCCCceeCCCCCHHHHHHHHHHh
Q 028606 54 GKKFLLFLDDLWNVNYDLWSYLCRPLVESCAPGSKDIITARF-TDVATM-VATTSTYPLECLSDEDCLRILAEQ 125 (206)
Q Consensus 54 ~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~~gs~IivTTr~-~~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~ 125 (206)
+++=.+|+|++...+......+...+- .-..++.+|++|.+ ..+... .+....+.+.+++.++..+.+...
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLE-EPp~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLE-EPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhc-CCCcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHc
Confidence 445577889988777888888888887 55667766666665 444433 333468999999999998888764
No 55
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=73.62 E-value=7.9 Score=28.01 Aligned_cols=59 Identities=12% Similarity=0.106 Sum_probs=37.3
Q ss_pred CcEEEEEcCCCCCChhhHHHHhhhccCCCCCCcEEEEeCCChH-HHHhh-CCCCceeCCCCC
Q 028606 55 KKFLLFLDDLWNVNYDLWSYLCRPLVESCAPGSKDIITARFTD-VATMV-ATTSTYPLECLS 114 (206)
Q Consensus 55 kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~~gs~IivTTr~~~-v~~~~-~~~~~~~l~~L~ 114 (206)
++=.+|+|++...+......|...+- .-..++.+|++|++.+ +...+ +....+.+.+++
T Consensus 102 ~~KviiI~~ad~l~~~a~NaLLK~LE-epp~~~~fiL~t~~~~~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 102 KYKVIIIDEADKLTEEAQNALLKTLE-EPPENTYFILITNNPSKILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp SSEEEEEETGGGS-HHHHHHHHHHHH-STTTTEEEEEEES-GGGS-HHHHTTSEEEEE----
T ss_pred CceEEEeehHhhhhHHHHHHHHHHhc-CCCCCEEEEEEECChHHChHHHHhhceEEecCCCC
Confidence 45578999998767888888888887 6677888888888765 33333 333456665553
No 56
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=72.05 E-value=16 Score=27.14 Aligned_cols=53 Identities=15% Similarity=-0.032 Sum_probs=33.1
Q ss_pred HHHHHHHHcCC-CcEEEEEcCCCCC---ChhhHHHHhhhccCCCCCCcEEEEeCCChH
Q 028606 44 LQGKLKKQFSG-KKFLLFLDDLWNV---NYDLWSYLCRPLVESCAPGSKDIITARFTD 97 (206)
Q Consensus 44 ~~~~l~~~L~~-kr~LlVLDdv~~~---~~~~~~~l~~~l~~~~~~gs~IivTTr~~~ 97 (206)
..+..++.+.. .--|+|||.+-.. ..-..+.+...+. ....+.-||+|-|+..
T Consensus 103 ~~~~a~~~l~~~~~dlvVLDEi~~Al~~gli~~eeVl~~L~-~rp~~~evILTGR~~p 159 (178)
T PRK07414 103 LWQYTQAVVDEGRYSLVVLDELSLAIQFGLIPETEVLEFLE-KRPSHVDVILTGPEMP 159 (178)
T ss_pred HHHHHHHHHhCCCCCEEEEehhHHHHHCCCccHHHHHHHHH-hCCCCCEEEEECCCCC
Confidence 34455556654 4569999998421 2223355555565 5556778999999754
No 57
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=71.94 E-value=11 Score=25.62 Aligned_cols=46 Identities=17% Similarity=0.073 Sum_probs=26.6
Q ss_pred cCCCcEEEEEcCCCCCChhhHHHHhhhccC--CC---CCCcEEEEeCCChH
Q 028606 52 FSGKKFLLFLDDLWNVNYDLWSYLCRPLVE--SC---APGSKDIITARFTD 97 (206)
Q Consensus 52 L~~kr~LlVLDdv~~~~~~~~~~l~~~l~~--~~---~~gs~IivTTr~~~ 97 (206)
...+..++++||++.......+.+...+.. .. ..+..||+||....
T Consensus 81 ~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 81 EKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred ccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 345678999999983212233333333331 11 35778888887554
No 58
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=71.42 E-value=17 Score=27.55 Aligned_cols=104 Identities=16% Similarity=0.088 Sum_probs=51.8
Q ss_pred cEEEEEcCCCCCChhhHHHHhhhccCCCCCCc-EEEEeCCChHHHH--------hhCCCCceeCCCCCHHHHHHHHHHhh
Q 028606 56 KFLLFLDDLWNVNYDLWSYLCRPLVESCAPGS-KDIITARFTDVAT--------MVATTSTYPLECLSDEDCLRILAEQS 126 (206)
Q Consensus 56 r~LlVLDdv~~~~~~~~~~l~~~l~~~~~~gs-~IivTTr~~~v~~--------~~~~~~~~~l~~L~~~~~~~Lf~~~a 126 (206)
.-++|+||+...+...-+.+...+......|. .+|+|++...... .+.....+.+.++++++-..++...+
T Consensus 91 ~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~ 170 (227)
T PRK08903 91 AELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALKAAA 170 (227)
T ss_pred CCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHH
Confidence 34788999963222222234333430112344 3666665433221 22223578999999987777666543
Q ss_pred cCCCCCCCCchhhhcchhhcCCCCCHHHHHHHHhhc
Q 028606 127 LGTTDFSNDTEPILGPSDRSSHRMDIEEDNNIEDHQ 162 (206)
Q Consensus 127 f~~~~~~~~~~~~lg~~l~~~~~~~~~~w~~~~~~~ 162 (206)
.... -..++.++. .+......+..+-..+++.+
T Consensus 171 -~~~~-v~l~~~al~-~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 171 -AERG-LQLADEVPD-YLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred -HHcC-CCCCHHHHH-HHHHhccCCHHHHHHHHHHH
Confidence 1111 112222333 33334445666666666665
No 59
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=70.77 E-value=16 Score=30.66 Aligned_cols=71 Identities=15% Similarity=0.079 Sum_probs=40.1
Q ss_pred EEEEEcCCCCCC-hhhH-HHHhhhccCCCCCCcEEEEeCCCh-HHH--------HhhCCCCceeCCCCCHHHHHHHHHHh
Q 028606 57 FLLFLDDLWNVN-YDLW-SYLCRPLVESCAPGSKDIITARFT-DVA--------TMVATTSTYPLECLSDEDCLRILAEQ 125 (206)
Q Consensus 57 ~LlVLDdv~~~~-~~~~-~~l~~~l~~~~~~gs~IivTTr~~-~v~--------~~~~~~~~~~l~~L~~~~~~~Lf~~~ 125 (206)
-+|+|||+..-. ...+ +.+...+..-...|..+|+|+... ... ..+....++.+++.+.++-..++...
T Consensus 201 dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~ 280 (405)
T TIGR00362 201 DLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKK 280 (405)
T ss_pred CEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHH
Confidence 378999996311 1111 223332220112355688887642 211 11222346889999999999999988
Q ss_pred hc
Q 028606 126 SL 127 (206)
Q Consensus 126 af 127 (206)
+-
T Consensus 281 ~~ 282 (405)
T TIGR00362 281 AE 282 (405)
T ss_pred HH
Confidence 74
No 60
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=70.62 E-value=19 Score=28.64 Aligned_cols=70 Identities=11% Similarity=0.108 Sum_probs=44.4
Q ss_pred cEEEEEcCCCCC---------ChhhHHHHhhhccCCCCCCcEEEEeCCChHHHHhhCC--------CCceeCCCCCHHHH
Q 028606 56 KFLLFLDDLWNV---------NYDLWSYLCRPLVESCAPGSKDIITARFTDVATMVAT--------TSTYPLECLSDEDC 118 (206)
Q Consensus 56 r~LlVLDdv~~~---------~~~~~~~l~~~l~~~~~~gs~IivTTr~~~v~~~~~~--------~~~~~l~~L~~~~~ 118 (206)
.-+|+||++..- .....+.+...+. ....+-+||.++........... ...+.+++++.++-
T Consensus 122 ~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le-~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl 200 (284)
T TIGR02880 122 GGVLFIDEAYYLYRPDNERDYGQEAIEILLQVME-NQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAEL 200 (284)
T ss_pred CcEEEEechhhhccCCCccchHHHHHHHHHHHHh-cCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHH
Confidence 468899998511 1223445555555 44556677777765433222111 34688999999999
Q ss_pred HHHHHHhh
Q 028606 119 LRILAEQS 126 (206)
Q Consensus 119 ~~Lf~~~a 126 (206)
..++...+
T Consensus 201 ~~I~~~~l 208 (284)
T TIGR02880 201 LVIAGLML 208 (284)
T ss_pred HHHHHHHH
Confidence 99998876
No 61
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=68.89 E-value=64 Score=27.21 Aligned_cols=113 Identities=17% Similarity=0.078 Sum_probs=60.9
Q ss_pred eeEEEEeCCCCCHHHHHHHHHHHhhcCCCCCCC----CHHHHHH---HHHH--HcC--CCcEEEEEcCCCCCChhhHHHH
Q 028606 7 LQASTYVGGDFDALKVTKSILKSIATDQPVDDN----DLNLLQG---KLKK--QFS--GKKFLLFLDDLWNVNYDLWSYL 75 (206)
Q Consensus 7 ~~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~----~~~~~~~---~l~~--~L~--~kr~LlVLDdv~~~~~~~~~~l 75 (206)
..+|+++-..++..-++..|+.++ +..+.+.. +.+...+ .+.+ ... ++.++||||++. ...+.+.+
T Consensus 57 ~~vw~n~~ecft~~~lle~IL~~~-~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad--~lrD~~a~ 133 (438)
T KOG2543|consen 57 ENVWLNCVECFTYAILLEKILNKS-QLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNAD--ALRDMDAI 133 (438)
T ss_pred cceeeehHHhccHHHHHHHHHHHh-ccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHH--hhhccchH
Confidence 358999999999999999999998 42221111 1122222 2222 111 358999999986 43333222
Q ss_pred h--------hhccCCCCCCcEEEEeCCChHHH--HhhCCCC--ceeCCCCCHHHHHHHHHHh
Q 028606 76 C--------RPLVESCAPGSKDIITARFTDVA--TMVATTS--TYPLECLSDEDCLRILAEQ 125 (206)
Q Consensus 76 ~--------~~l~~~~~~gs~IivTTr~~~v~--~~~~~~~--~~~l~~L~~~~~~~Lf~~~ 125 (206)
. ..++ .+...|+...-.-+-. ..+|..+ ++....-+.++-..++.+.
T Consensus 134 ll~~l~~L~el~~---~~~i~iils~~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 134 LLQCLFRLYELLN---EPTIVIILSAPSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred HHHHHHHHHHHhC---CCceEEEEeccccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 1 1222 2233333332222221 2234433 4556666778888877653
No 62
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=68.60 E-value=50 Score=29.98 Aligned_cols=73 Identities=12% Similarity=0.181 Sum_probs=50.0
Q ss_pred CCCcEEEEEcCCCCCChhhHHHHhhhccCCCCCCcEEEEeCCChH-HH-HhhCCCCceeCCCCCHHHHHHHHHHhh
Q 028606 53 SGKKFLLFLDDLWNVNYDLWSYLCRPLVESCAPGSKDIITARFTD-VA-TMVATTSTYPLECLSDEDCLRILAEQS 126 (206)
Q Consensus 53 ~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~~gs~IivTTr~~~-v~-~~~~~~~~~~l~~L~~~~~~~Lf~~~a 126 (206)
.+++-++|+|++..-+......+...+. ....+.++|++|.+.. +. +.......+++++++.++....+...+
T Consensus 116 ~gk~KV~IIDEVh~LS~~A~NALLKtLE-EPP~~v~FILaTtd~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il 190 (702)
T PRK14960 116 QGRFKVYLIDEVHMLSTHSFNALLKTLE-EPPEHVKFLFATTDPQKLPITVISRCLQFTLRPLAVDEITKHLGAIL 190 (702)
T ss_pred cCCcEEEEEechHhcCHHHHHHHHHHHh-cCCCCcEEEEEECChHhhhHHHHHhhheeeccCCCHHHHHHHHHHHH
Confidence 3566688999997545667777777776 5445667777776533 32 222334678999999998888877665
No 63
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=68.59 E-value=30 Score=31.15 Aligned_cols=73 Identities=12% Similarity=0.158 Sum_probs=50.3
Q ss_pred CCCcEEEEEcCCCCCChhhHHHHhhhccCCCCCCcEEEEeCCC-hHHHHh-hCCCCceeCCCCCHHHHHHHHHHhh
Q 028606 53 SGKKFLLFLDDLWNVNYDLWSYLCRPLVESCAPGSKDIITARF-TDVATM-VATTSTYPLECLSDEDCLRILAEQS 126 (206)
Q Consensus 53 ~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~~gs~IivTTr~-~~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~a 126 (206)
.+++-++|+|++...+....+.+...+- .-....++|++|.+ ..+... ......+++++++.++....+.+..
T Consensus 117 ~g~~KV~IIDEah~Ls~~a~NALLKtLE-EPp~~v~FIL~Tt~~~kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~il 191 (647)
T PRK07994 117 RGRFKVYLIDEVHMLSRHSFNALLKTLE-EPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRQQLEHIL 191 (647)
T ss_pred cCCCEEEEEechHhCCHHHHHHHHHHHH-cCCCCeEEEEecCCccccchHHHhhheEeeCCCCCHHHHHHHHHHHH
Confidence 4566789999997657777788877776 44445556655554 444322 2234679999999999988887654
No 64
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=68.34 E-value=27 Score=29.80 Aligned_cols=71 Identities=14% Similarity=0.090 Sum_probs=41.3
Q ss_pred EEEEEcCCCCC--ChhhHHHHhhhccCCCCCCcEEEEeCCChH--H-------HHhhCCCCceeCCCCCHHHHHHHHHHh
Q 028606 57 FLLFLDDLWNV--NYDLWSYLCRPLVESCAPGSKDIITARFTD--V-------ATMVATTSTYPLECLSDEDCLRILAEQ 125 (206)
Q Consensus 57 ~LlVLDdv~~~--~~~~~~~l~~~l~~~~~~gs~IivTTr~~~--v-------~~~~~~~~~~~l~~L~~~~~~~Lf~~~ 125 (206)
-+|+|||+..- ....-+.+...+..-...|..||+|+.... + ...+....++.+++++.++-..++...
T Consensus 213 dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~ 292 (450)
T PRK00149 213 DVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKK 292 (450)
T ss_pred CEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHH
Confidence 38999999621 111112233222101123556888876432 1 222333457899999999999999998
Q ss_pred hc
Q 028606 126 SL 127 (206)
Q Consensus 126 af 127 (206)
+-
T Consensus 293 ~~ 294 (450)
T PRK00149 293 AE 294 (450)
T ss_pred HH
Confidence 84
No 65
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=68.07 E-value=27 Score=29.35 Aligned_cols=72 Identities=11% Similarity=0.223 Sum_probs=47.7
Q ss_pred CCcEEEEEcCCCCCChhhHHHHhhhccCCCCCCcEEEEeC-CChHHHHhhC-CCCceeCCCCCHHHHHHHHHHhh
Q 028606 54 GKKFLLFLDDLWNVNYDLWSYLCRPLVESCAPGSKDIITA-RFTDVATMVA-TTSTYPLECLSDEDCLRILAEQS 126 (206)
Q Consensus 54 ~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~~gs~IivTT-r~~~v~~~~~-~~~~~~l~~L~~~~~~~Lf~~~a 126 (206)
+++-++|+|++..-+...++.+...+. +....+.+|++| +...+..... ....+++++++.++....+...+
T Consensus 126 ~~~kvvIIdea~~l~~~~~~~LLk~LE-ep~~~t~~Il~t~~~~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~ 199 (397)
T PRK14955 126 GRYRVYIIDEVHMLSIAAFNAFLKTLE-EPPPHAIFIFATTELHKIPATIASRCQRFNFKRIPLEEIQQQLQGIC 199 (397)
T ss_pred CCeEEEEEeChhhCCHHHHHHHHHHHh-cCCCCeEEEEEeCChHHhHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 456688999987445557777877776 555566666655 4344443321 13468899999988887777655
No 66
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=67.77 E-value=23 Score=33.20 Aligned_cols=73 Identities=11% Similarity=0.164 Sum_probs=51.4
Q ss_pred CCCcEEEEEcCCCCCChhhHHHHhhhccCCCCCCcEEEEeCCC-hHHHHh-hCCCCceeCCCCCHHHHHHHHHHhh
Q 028606 53 SGKKFLLFLDDLWNVNYDLWSYLCRPLVESCAPGSKDIITARF-TDVATM-VATTSTYPLECLSDEDCLRILAEQS 126 (206)
Q Consensus 53 ~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~~gs~IivTTr~-~~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~a 126 (206)
.+++-++|||++...+....+.|...+- .-....++|++|.+ ..+... ......|++++|+.++....+.+.+
T Consensus 117 ~gk~KViIIDEAh~LT~eAqNALLKtLE-EPP~~vrFILaTTe~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il 191 (944)
T PRK14949 117 RGRFKVYLIDEVHMLSRSSFNALLKTLE-EPPEHVKFLLATTDPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHIL 191 (944)
T ss_pred cCCcEEEEEechHhcCHHHHHHHHHHHh-ccCCCeEEEEECCCchhchHHHHHhheEEeCCCCCHHHHHHHHHHHH
Confidence 4567799999997657777888887776 44456666666554 434423 2234689999999999988887755
No 67
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=67.60 E-value=34 Score=31.12 Aligned_cols=72 Identities=14% Similarity=0.172 Sum_probs=45.7
Q ss_pred CCcEEEEEcCCCCCChhhHHHHhhhccCCCCCCcEEEEeCCChH-HHHh-hCCCCceeCCCCCHHHHHHHHHHhh
Q 028606 54 GKKFLLFLDDLWNVNYDLWSYLCRPLVESCAPGSKDIITARFTD-VATM-VATTSTYPLECLSDEDCLRILAEQS 126 (206)
Q Consensus 54 ~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~~gs~IivTTr~~~-v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~a 126 (206)
+++-++|+|++...+......|...+. ......++|++|.+.. +... .+....+.+.+++.++....+.+.+
T Consensus 118 gk~KVIIIDEad~Ls~~A~NALLKtLE-EPp~~v~fILaTtd~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il 191 (709)
T PRK08691 118 GKYKVYIIDEVHMLSKSAFNAMLKTLE-EPPEHVKFILATTDPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVL 191 (709)
T ss_pred CCcEEEEEECccccCHHHHHHHHHHHH-hCCCCcEEEEEeCCccccchHHHHHHhhhhcCCCCHHHHHHHHHHHH
Confidence 566789999987445555666666665 4344566777665432 2222 1223467888999988888777655
No 68
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=67.28 E-value=26 Score=31.42 Aligned_cols=73 Identities=10% Similarity=0.154 Sum_probs=48.7
Q ss_pred CCCcEEEEEcCCCCCChhhHHHHhhhccCCCCCCcEEEEeCCC-hHHHHhh-CCCCceeCCCCCHHHHHHHHHHhh
Q 028606 53 SGKKFLLFLDDLWNVNYDLWSYLCRPLVESCAPGSKDIITARF-TDVATMV-ATTSTYPLECLSDEDCLRILAEQS 126 (206)
Q Consensus 53 ~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~~gs~IivTTr~-~~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~a 126 (206)
.+++-++|+|++...+....+.|...+. .......+|++|.+ ..+...+ .....+++++++.++....+...+
T Consensus 117 ~g~~kVIIIDEad~Lt~~a~naLLk~LE-EP~~~~ifILaTt~~~kll~TI~SRcq~i~F~pLs~~eL~~~L~~il 191 (624)
T PRK14959 117 EGRYKVFIIDEAHMLTREAFNALLKTLE-EPPARVTFVLATTEPHKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVL 191 (624)
T ss_pred cCCceEEEEEChHhCCHHHHHHHHHHhh-ccCCCEEEEEecCChhhhhHHHHhhhhccccCCCCHHHHHHHHHHHH
Confidence 3566789999997555666777777775 43345566665554 4444332 223578899999999888887755
No 69
>PRK08116 hypothetical protein; Validated
Probab=67.09 E-value=14 Score=29.26 Aligned_cols=47 Identities=21% Similarity=0.326 Sum_probs=25.4
Q ss_pred HHHcCCCcEEEEEcCCCCCChhhHHH--HhhhccCCCCCCcEEEEeCCCh
Q 028606 49 KKQFSGKKFLLFLDDLWNVNYDLWSY--LCRPLVESCAPGSKDIITARFT 96 (206)
Q Consensus 49 ~~~L~~kr~LlVLDdv~~~~~~~~~~--l~~~l~~~~~~gs~IivTTr~~ 96 (206)
.+.+.+-. ||||||+-......|.. +...+...-..|..+|+||...
T Consensus 173 ~~~l~~~d-lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 173 IRSLVNAD-LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNLS 221 (268)
T ss_pred HHHhcCCC-EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCC
Confidence 33444334 89999994323444533 3333321123566799999743
No 70
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=66.62 E-value=32 Score=29.48 Aligned_cols=72 Identities=14% Similarity=0.104 Sum_probs=41.0
Q ss_pred cEEEEEcCCCCCChhh--HHHHhhhccCCCCCCcEEEEeCCCh-H--------HHHhhCCCCceeCCCCCHHHHHHHHHH
Q 028606 56 KFLLFLDDLWNVNYDL--WSYLCRPLVESCAPGSKDIITARFT-D--------VATMVATTSTYPLECLSDEDCLRILAE 124 (206)
Q Consensus 56 r~LlVLDdv~~~~~~~--~~~l~~~l~~~~~~gs~IivTTr~~-~--------v~~~~~~~~~~~l~~L~~~~~~~Lf~~ 124 (206)
.-++++||+..-.... -+.+...+..-...|..||+||... . +...+...-++.+++++.++-..++.+
T Consensus 203 ~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~ 282 (445)
T PRK12422 203 VDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLER 282 (445)
T ss_pred CCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHH
Confidence 3478899986321111 1222222210012356788888642 1 122222345788999999999999998
Q ss_pred hhc
Q 028606 125 QSL 127 (206)
Q Consensus 125 ~af 127 (206)
++-
T Consensus 283 k~~ 285 (445)
T PRK12422 283 KAE 285 (445)
T ss_pred HHH
Confidence 873
No 71
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=66.39 E-value=29 Score=30.63 Aligned_cols=73 Identities=15% Similarity=0.183 Sum_probs=48.9
Q ss_pred CCCcEEEEEcCCCCCChhhHHHHhhhccCCCCCCcEEEE-eCCChHHHHh-hCCCCceeCCCCCHHHHHHHHHHhh
Q 028606 53 SGKKFLLFLDDLWNVNYDLWSYLCRPLVESCAPGSKDII-TARFTDVATM-VATTSTYPLECLSDEDCLRILAEQS 126 (206)
Q Consensus 53 ~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~~gs~Iiv-TTr~~~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~a 126 (206)
.+++-++|+|++...+....+.+...+. .......+|+ ||....+... ......+++++++.++....+...+
T Consensus 117 ~g~~kViIIDEa~~ls~~a~naLLK~LE-epp~~v~fIL~Ttd~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il 191 (546)
T PRK14957 117 QGRYKVYLIDEVHMLSKQSFNALLKTLE-EPPEYVKFILATTDYHKIPVTILSRCIQLHLKHISQADIKDQLKIIL 191 (546)
T ss_pred cCCcEEEEEechhhccHHHHHHHHHHHh-cCCCCceEEEEECChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHH
Confidence 3566789999987556667777887776 5445565555 4444444423 2234689999999998877777644
No 72
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=66.34 E-value=45 Score=26.71 Aligned_cols=58 Identities=19% Similarity=0.166 Sum_probs=36.2
Q ss_pred HHHHHHHHHHcC--CCcEEEEEcCCCCCChhhH----HHHhhhccCCCCCCcEEEEeCCChHHHHhh
Q 028606 42 NLLQGKLKKQFS--GKKFLLFLDDLWNVNYDLW----SYLCRPLVESCAPGSKDIITARFTDVATMV 102 (206)
Q Consensus 42 ~~~~~~l~~~L~--~kr~LlVLDdv~~~~~~~~----~~l~~~l~~~~~~gs~IivTTr~~~v~~~~ 102 (206)
++....+.+.|. ++|.++|+||++..+.+.. +.+...+. .++..+|+..-.+.++...
T Consensus 157 ~~~~~~~~~~l~~~~~~iViiIDdLDR~~~~~i~~~l~~ik~~~~---~~~i~~Il~~D~~~l~~ai 220 (325)
T PF07693_consen 157 EELISKIKKKLKESKKRIVIIIDDLDRCSPEEIVELLEAIKLLLD---FPNIIFILAFDPEILEKAI 220 (325)
T ss_pred HHHHHHHHHhhhcCCceEEEEEcchhcCCcHHHHHHHHHHHHhcC---CCCeEEEEEecHHHHHHHH
Confidence 335556666664 5799999999986555543 33333333 3677777776666665544
No 73
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=66.33 E-value=39 Score=31.42 Aligned_cols=73 Identities=15% Similarity=0.138 Sum_probs=49.9
Q ss_pred CCCcEEEEEcCCCCCChhhHHHHhhhccCCCCCCcEEEEeCC-ChHHHHhh-CCCCceeCCCCCHHHHHHHHHHhh
Q 028606 53 SGKKFLLFLDDLWNVNYDLWSYLCRPLVESCAPGSKDIITAR-FTDVATMV-ATTSTYPLECLSDEDCLRILAEQS 126 (206)
Q Consensus 53 ~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~~gs~IivTTr-~~~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~a 126 (206)
.+++-++|||++...+....+.|...+. +-...+.+|++|. ...+...+ .....|.+..++.++....+.+..
T Consensus 118 ~~~~KV~IIDEad~lt~~a~NaLLK~LE-EpP~~~~fIl~tt~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il 192 (824)
T PRK07764 118 ESRYKIFIIDEAHMVTPQGFNALLKIVE-EPPEHLKFIFATTEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERIC 192 (824)
T ss_pred cCCceEEEEechhhcCHHHHHHHHHHHh-CCCCCeEEEEEeCChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHH
Confidence 3555578899987667777788888887 5555666665554 34444433 234678999999998887777654
No 74
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=66.26 E-value=31 Score=30.94 Aligned_cols=72 Identities=13% Similarity=0.181 Sum_probs=49.4
Q ss_pred CCcEEEEEcCCCCCChhhHHHHhhhccCCCCCCcEEEEeCC-ChHHHHh-hCCCCceeCCCCCHHHHHHHHHHhh
Q 028606 54 GKKFLLFLDDLWNVNYDLWSYLCRPLVESCAPGSKDIITAR-FTDVATM-VATTSTYPLECLSDEDCLRILAEQS 126 (206)
Q Consensus 54 ~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~~gs~IivTTr-~~~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~a 126 (206)
++.-++|||++...+...++.+...+. .-....++|++|. ...+... ......+.++.++.++....+.+.+
T Consensus 123 g~~KV~IIDEvh~Ls~~a~NaLLKtLE-EPP~~~~fIL~Ttd~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~ 196 (618)
T PRK14951 123 GRFKVFMIDEVHMLTNTAFNAMLKTLE-EPPEYLKFVLATTDPQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVL 196 (618)
T ss_pred CCceEEEEEChhhCCHHHHHHHHHhcc-cCCCCeEEEEEECCchhhhHHHHHhceeeecCCCCHHHHHHHHHHHH
Confidence 445588999997667777888887776 4445556665554 3444322 2234679999999999888887765
No 75
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=65.84 E-value=48 Score=26.12 Aligned_cols=102 Identities=7% Similarity=-0.078 Sum_probs=60.2
Q ss_pred CCCcEEEEEcCCCCCChhhHHHHhhhccCCCCCCcEEEEeCC-ChHHHHhhC-CCCceeCCCCCHHHHHHHHHHhhcCCC
Q 028606 53 SGKKFLLFLDDLWNVNYDLWSYLCRPLVESCAPGSKDIITAR-FTDVATMVA-TTSTYPLECLSDEDCLRILAEQSLGTT 130 (206)
Q Consensus 53 ~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~~gs~IivTTr-~~~v~~~~~-~~~~~~l~~L~~~~~~~Lf~~~af~~~ 130 (206)
.+++=.+|++++...+......+...+- .-..++.+|++|. ...+...+. ....+.++..+...+.++....++...
T Consensus 87 ~g~~KViII~~ae~mt~~AANALLKtLE-EPP~~t~fILit~~~~~LLpTIrSRCq~i~~~~p~~~~~~e~~~~~~~p~~ 165 (263)
T PRK06581 87 ISGYKVAIIYSAELMNLNAANSCLKILE-DAPKNSYIFLITSRAASIISTIRSRCFKINVRSSILHAYNELYSQFIQPIA 165 (263)
T ss_pred cCCcEEEEEechHHhCHHHHHHHHHhhc-CCCCCeEEEEEeCChhhCchhHhhceEEEeCCCCCHHHHHHHHHHhccccc
Confidence 3566678889887556666677777776 5556676666554 445554433 345778888888777777776554333
Q ss_pred CCCCCchhhhcchhhcCCCCCHHHHHHHHhh
Q 028606 131 DFSNDTEPILGPSDRSSHRMDIEEDNNIEDH 161 (206)
Q Consensus 131 ~~~~~~~~~lg~~l~~~~~~~~~~w~~~~~~ 161 (206)
+.+. ...+++ ....+.++|....+.
T Consensus 166 ~~~~--l~~i~~----~~~~d~~~w~~~~~~ 190 (263)
T PRK06581 166 DNKT--LDFINR----FTTKDRELWLDFIDN 190 (263)
T ss_pred ccHH--HHHHHH----HhhhhHHHHHHHHHH
Confidence 2221 122222 233456677665543
No 76
>PRK04132 replication factor C small subunit; Provisional
Probab=65.01 E-value=70 Score=29.91 Aligned_cols=86 Identities=19% Similarity=0.295 Sum_probs=55.5
Q ss_pred CHHHHHHHHHHHcC-----C-CcEEEEEcCCCCCChhhHHHHhhhccCCCCCCcEEEEeCCChH-HHHhh-CCCCceeCC
Q 028606 40 DLNLLQGKLKKQFS-----G-KKFLLFLDDLWNVNYDLWSYLCRPLVESCAPGSKDIITARFTD-VATMV-ATTSTYPLE 111 (206)
Q Consensus 40 ~~~~~~~~l~~~L~-----~-kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~~gs~IivTTr~~~-v~~~~-~~~~~~~l~ 111 (206)
..+.+.+.+++... + +.-++|||++...+......+...+. .-....++|++|.+.. +.... +....+.++
T Consensus 609 gid~IR~iIk~~a~~~~~~~~~~KVvIIDEaD~Lt~~AQnALLk~lE-ep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~ 687 (846)
T PRK04132 609 GINVIREKVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTME-MFSSNVRFILSCNYSSKIIEPIQSRCAIFRFR 687 (846)
T ss_pred cHHHHHHHHHHHHhcCCcCCCCCEEEEEECcccCCHHHHHHHHHHhh-CCCCCeEEEEEeCChhhCchHHhhhceEEeCC
Confidence 34555555554331 1 34689999998666667777777766 4455677777766544 33222 234689999
Q ss_pred CCCHHHHHHHHHHhh
Q 028606 112 CLSDEDCLRILAEQS 126 (206)
Q Consensus 112 ~L~~~~~~~Lf~~~a 126 (206)
+++.++....+...+
T Consensus 688 ~ls~~~i~~~L~~I~ 702 (846)
T PRK04132 688 PLRDEDIAKRLRYIA 702 (846)
T ss_pred CCCHHHHHHHHHHHH
Confidence 999888887777654
No 77
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=64.80 E-value=17 Score=27.27 Aligned_cols=53 Identities=21% Similarity=0.143 Sum_probs=36.5
Q ss_pred HHHHHHHHcCCCcE-EEEEcCCCCC---ChhhHHHHhhhccCCCCCCcEEEEeCCChH
Q 028606 44 LQGKLKKQFSGKKF-LLFLDDLWNV---NYDLWSYLCRPLVESCAPGSKDIITARFTD 97 (206)
Q Consensus 44 ~~~~l~~~L~~kr~-LlVLDdv~~~---~~~~~~~l~~~l~~~~~~gs~IivTTr~~~ 97 (206)
.-+..++.+...+| |+|||.+... ..-.++.+...+. ......-||+|-|...
T Consensus 110 ~w~~a~~~l~~~~ydlviLDEl~~al~~g~l~~eeV~~~l~-~kP~~~~vIiTGr~ap 166 (198)
T COG2109 110 GWEHAKEALADGKYDLVILDELNYALRYGLLPLEEVVALLK-ARPEHTHVIITGRGAP 166 (198)
T ss_pred HHHHHHHHHhCCCCCEEEEehhhHHHHcCCCCHHHHHHHHh-cCCCCcEEEEECCCCC
Confidence 34556666766555 9999988421 4445677777777 6667788999998643
No 78
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=64.10 E-value=20 Score=26.41 Aligned_cols=54 Identities=15% Similarity=0.019 Sum_probs=30.1
Q ss_pred HHHHHHHHHcCCCc-EEEEEcCCCCC---ChhhHHHHhhhccCCCCCCcEEEEeCCChH
Q 028606 43 LLQGKLKKQFSGKK-FLLFLDDLWNV---NYDLWSYLCRPLVESCAPGSKDIITARFTD 97 (206)
Q Consensus 43 ~~~~~l~~~L~~kr-~LlVLDdv~~~---~~~~~~~l~~~l~~~~~~gs~IivTTr~~~ 97 (206)
+..+..++.+.... =|||||.+-.. ..-..+.+...+. ....+.-||+|-|+..
T Consensus 83 ~~~~~a~~~i~~~~~dlvILDEi~~a~~~gll~~~~v~~~l~-~rp~~~evVlTGR~~~ 140 (172)
T PF02572_consen 83 EGLEEAKEAISSGEYDLVILDEINYAVDYGLLSEEEVLDLLE-NRPESLEVVLTGRNAP 140 (172)
T ss_dssp HHHHHHHHHTT-TT-SEEEEETHHHHHHTTSS-HHHHHHHHH-TS-TT-EEEEE-SS--
T ss_pred HHHHHHHHHHhCCCCCEEEEcchHHHhHCCCccHHHHHHHHH-cCCCCeEEEEECCCCC
Confidence 34455666676554 59999987411 2223455555665 5557889999999765
No 79
>PRK10536 hypothetical protein; Provisional
Probab=62.82 E-value=15 Score=29.01 Aligned_cols=41 Identities=17% Similarity=0.284 Sum_probs=28.3
Q ss_pred HcCCCcE---EEEEcCCCCCChhhHHHHhhhccCCCCCCcEEEEeCCC
Q 028606 51 QFSGKKF---LLFLDDLWNVNYDLWSYLCRPLVESCAPGSKDIITARF 95 (206)
Q Consensus 51 ~L~~kr~---LlVLDdv~~~~~~~~~~l~~~l~~~~~~gs~IivTTr~ 95 (206)
+++|+.+ +||+|...+.+..+...+.. ..+.||++|+|--.
T Consensus 169 ymRGrtl~~~~vIvDEaqn~~~~~~k~~lt----R~g~~sk~v~~GD~ 212 (262)
T PRK10536 169 YMRGRTFENAVVILDEAQNVTAAQMKMFLT----RLGENVTVIVNGDI 212 (262)
T ss_pred HhcCCcccCCEEEEechhcCCHHHHHHHHh----hcCCCCEEEEeCCh
Confidence 4566644 99999998655555555444 44589999998743
No 80
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=61.74 E-value=92 Score=28.03 Aligned_cols=73 Identities=8% Similarity=0.179 Sum_probs=47.2
Q ss_pred CCCcEEEEEcCCCCCChhhHHHHhhhccCCCCCCcEEEEeC-CChHHHHh-hCCCCceeCCCCCHHHHHHHHHHhh
Q 028606 53 SGKKFLLFLDDLWNVNYDLWSYLCRPLVESCAPGSKDIITA-RFTDVATM-VATTSTYPLECLSDEDCLRILAEQS 126 (206)
Q Consensus 53 ~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~~gs~IivTT-r~~~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~a 126 (206)
.+++-++|+|++...+....+.|...+. .-...+.+|++| +...+... ......+++++++.++....+...+
T Consensus 125 ~~~~KVvIIdEad~Lt~~a~naLLK~LE-ePp~~tv~IL~t~~~~kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~ 199 (620)
T PRK14954 125 KGRYRVYIIDEVHMLSTAAFNAFLKTLE-EPPPHAIFIFATTELHKIPATIASRCQRFNFKRIPLDEIQSQLQMIC 199 (620)
T ss_pred cCCCEEEEEeChhhcCHHHHHHHHHHHh-CCCCCeEEEEEeCChhhhhHHHHhhceEEecCCCCHHHHHHHHHHHH
Confidence 3456678999987445556777777776 444455555444 44444433 2335689999999998877777654
No 81
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=61.64 E-value=90 Score=26.69 Aligned_cols=73 Identities=16% Similarity=0.060 Sum_probs=41.0
Q ss_pred CcEEEEEcCCCCC-ChhhH-HHHhhhccCCCCCCcEEEEeCC-ChHHHHh--------hCCCCceeCCCCCHHHHHHHHH
Q 028606 55 KKFLLFLDDLWNV-NYDLW-SYLCRPLVESCAPGSKDIITAR-FTDVATM--------VATTSTYPLECLSDEDCLRILA 123 (206)
Q Consensus 55 kr~LlVLDdv~~~-~~~~~-~~l~~~l~~~~~~gs~IivTTr-~~~v~~~--------~~~~~~~~l~~L~~~~~~~Lf~ 123 (206)
+.-+|++||+..- +...+ +.+...+..-...|..||+||. ...-... +...-+..+++.+.+.-..++.
T Consensus 194 ~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~ 273 (440)
T PRK14088 194 KVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIAR 273 (440)
T ss_pred cCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHH
Confidence 3458999999621 11111 1222222101123556888874 3322211 2234478899999999999999
Q ss_pred Hhhc
Q 028606 124 EQSL 127 (206)
Q Consensus 124 ~~af 127 (206)
+.+-
T Consensus 274 ~~~~ 277 (440)
T PRK14088 274 KMLE 277 (440)
T ss_pred HHHH
Confidence 8873
No 82
>PF14024 DUF4240: Protein of unknown function (DUF4240)
Probab=61.24 E-value=20 Score=24.95 Aligned_cols=81 Identities=11% Similarity=0.121 Sum_probs=47.6
Q ss_pred CCHHHHHHHHHHhhcCCCCCCCCchhhhcchhhcCCCCCHHHHHHHHhhchhhcccchHHHHHHHHhcCCCchhHHHHHh
Q 028606 113 LSDEDCLRILAEQSLGTTDFSNDTEPILGPSDRSSHRMDIEEDNNIEDHQAQERRNWTVSLVIKLLYIIISSRGLFNFYF 192 (206)
Q Consensus 113 L~~~~~~~Lf~~~af~~~~~~~~~~~~lg~~l~~~~~~~~~~w~~~~~~~~~~~~~~~i~~~L~~sy~~Lp~~~lk~Cfl 192 (206)
|++++-|+|.....-............+-..|........-.+..++........+..+..+..+-....+.+ .|+
T Consensus 1 M~e~~FW~lI~~~~~~~~~d~~~~~~~L~~~L~~l~~~ei~~F~~~~~~~~~~~~~~~lw~Aa~ii~gg~SdD----~F~ 76 (128)
T PF14024_consen 1 MDEDEFWELIERAREASGGDPDEVAEPLVELLAKLPPEEIVAFDKILDQLLDEAYTWDLWAAAYIINGGCSDD----GFL 76 (128)
T ss_pred CCHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHcCCCchh----hHH
Confidence 4677788888775421111111112234444544444455667777777666666667777777776666666 889
Q ss_pred Hhhhh
Q 028606 193 YFHYV 197 (206)
Q Consensus 193 Y~~~~ 197 (206)
||.+.
T Consensus 77 yFR~w 81 (128)
T PF14024_consen 77 YFRCW 81 (128)
T ss_pred HHHHH
Confidence 97543
No 83
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=61.13 E-value=47 Score=27.20 Aligned_cols=72 Identities=14% Similarity=0.204 Sum_probs=51.5
Q ss_pred CCcEEEEEcCCCCCChhhHHHHhhhccCCCCCCcEEEEeCCCh-HHHHhh-CCCCceeCCCCCHHHHHHHHHHhh
Q 028606 54 GKKFLLFLDDLWNVNYDLWSYLCRPLVESCAPGSKDIITARFT-DVATMV-ATTSTYPLECLSDEDCLRILAEQS 126 (206)
Q Consensus 54 ~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~~gs~IivTTr~~-~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~a 126 (206)
+++=.+|+|++...+......+...+- .-..+..+|++|.+. .+...+ +....+.+.+++.++..+.+....
T Consensus 106 g~~KV~iI~~a~~m~~~AaNaLLKtLE-EPp~~~~fiL~t~~~~~llpTI~SRC~~~~~~~~~~~~~~~~L~~~~ 179 (325)
T PRK06871 106 GGNKVVYIQGAERLTEAAANALLKTLE-EPRPNTYFLLQADLSAALLPTIYSRCQTWLIHPPEEQQALDWLQAQS 179 (325)
T ss_pred CCceEEEEechhhhCHHHHHHHHHHhc-CCCCCeEEEEEECChHhCchHHHhhceEEeCCCCCHHHHHHHHHHHh
Confidence 455577899987666677777887776 555677777777654 444343 334689999999999988887653
No 84
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=60.67 E-value=29 Score=29.97 Aligned_cols=72 Identities=15% Similarity=0.213 Sum_probs=45.6
Q ss_pred CCcEEEEEcCCCCCChhhHHHHhhhccCCCCCCcEEEEeCCC-hHHHHhh-CCCCceeCCCCCHHHHHHHHHHhh
Q 028606 54 GKKFLLFLDDLWNVNYDLWSYLCRPLVESCAPGSKDIITARF-TDVATMV-ATTSTYPLECLSDEDCLRILAEQS 126 (206)
Q Consensus 54 ~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~~gs~IivTTr~-~~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~a 126 (206)
+++-++|+|++..-+....+.+...+. .......+|++|.+ ..+...+ .....+.+.+++.++....+...+
T Consensus 116 ~~~kVvIIDE~h~Lt~~a~~~LLk~LE-~p~~~vv~Ilattn~~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~ 189 (472)
T PRK14962 116 GKYKVYIIDEVHMLTKEAFNALLKTLE-EPPSHVVFVLATTNLEKVPPTIISRCQVIEFRNISDELIIKRLQEVA 189 (472)
T ss_pred CCeEEEEEEChHHhHHHHHHHHHHHHH-hCCCcEEEEEEeCChHhhhHHHhcCcEEEEECCccHHHHHHHHHHHH
Confidence 456689999986333445566666665 33334454444443 3443333 234578999999999888888766
No 85
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=60.18 E-value=52 Score=26.82 Aligned_cols=71 Identities=13% Similarity=0.103 Sum_probs=50.1
Q ss_pred CCcEEEEEcCCCCCChhhHHHHhhhccCCCCCCcEEEEeCCCh-HHHHhh-CCCCceeCCCCCHHHHHHHHHHh
Q 028606 54 GKKFLLFLDDLWNVNYDLWSYLCRPLVESCAPGSKDIITARFT-DVATMV-ATTSTYPLECLSDEDCLRILAEQ 125 (206)
Q Consensus 54 ~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~~gs~IivTTr~~-~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~ 125 (206)
+++=.+|+|++...+......+...+- .-..++.+|++|.+. .+...+ +....+.+.+++.++..+.+...
T Consensus 107 ~~~kV~iI~~ae~m~~~AaNaLLKtLE-EPp~~t~fiL~t~~~~~lLpTI~SRCq~~~~~~~~~~~~~~~L~~~ 179 (319)
T PRK06090 107 NGYRLFVIEPADAMNESASNALLKTLE-EPAPNCLFLLVTHNQKRLLPTIVSRCQQWVVTPPSTAQAMQWLKGQ 179 (319)
T ss_pred CCceEEEecchhhhCHHHHHHHHHHhc-CCCCCeEEEEEECChhhChHHHHhcceeEeCCCCCHHHHHHHHHHc
Confidence 344577888887667777777888876 555677777766654 444443 34568999999999998888653
No 86
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=59.73 E-value=41 Score=27.33 Aligned_cols=72 Identities=17% Similarity=0.176 Sum_probs=49.2
Q ss_pred CCCcEEEEEcCCCCCChhhHHHHhhhccCCCCCCcEEEEeCCC-hHHHHhh-CCCCceeCCCCCHHHHHHHHHHhh
Q 028606 53 SGKKFLLFLDDLWNVNYDLWSYLCRPLVESCAPGSKDIITARF-TDVATMV-ATTSTYPLECLSDEDCLRILAEQS 126 (206)
Q Consensus 53 ~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~~gs~IivTTr~-~~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~a 126 (206)
.+++=++|+|++...+......+...+- .-. .+.+|++|.+ ..+...+ +....+.+.++++++..+.+....
T Consensus 122 ~~~~kVvII~~ae~m~~~aaNaLLK~LE-EPp-~~~fILi~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~ 195 (314)
T PRK07399 122 EAPRKVVVIEDAETMNEAAANALLKTLE-EPG-NGTLILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLG 195 (314)
T ss_pred cCCceEEEEEchhhcCHHHHHHHHHHHh-CCC-CCeEEEEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhh
Confidence 3556688899887556667777877776 333 3455555544 3444433 335689999999999999998764
No 87
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=59.70 E-value=30 Score=26.93 Aligned_cols=65 Identities=9% Similarity=0.084 Sum_probs=41.9
Q ss_pred HHHHHHHHcCCCcEEEEEcCCCCC-ChhhHHHHhhhccCCCCCCcEEEEeCCChHHHHhhCCCCce
Q 028606 44 LQGKLKKQFSGKKFLLFLDDLWNV-NYDLWSYLCRPLVESCAPGSKDIITARFTDVATMVATTSTY 108 (206)
Q Consensus 44 ~~~~l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~~~~gs~IivTTr~~~v~~~~~~~~~~ 108 (206)
....+-+.+.-+.=|.|||..+.. +.+.++.+...+..-...|+.+++.|..+.++..+.++.+|
T Consensus 151 KR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vh 216 (251)
T COG0396 151 KRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVH 216 (251)
T ss_pred HHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEE
Confidence 344555555666678999987633 44444444433331234588899999999999998765543
No 88
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=58.04 E-value=1.2e+02 Score=27.25 Aligned_cols=72 Identities=10% Similarity=0.150 Sum_probs=48.7
Q ss_pred CCcEEEEEcCCCCCChhhHHHHhhhccCCCCCCcEEEEeC-CChHHHHhh-CCCCceeCCCCCHHHHHHHHHHhh
Q 028606 54 GKKFLLFLDDLWNVNYDLWSYLCRPLVESCAPGSKDIITA-RFTDVATMV-ATTSTYPLECLSDEDCLRILAEQS 126 (206)
Q Consensus 54 ~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~~gs~IivTT-r~~~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~a 126 (206)
+++=++|+|++..-+...++.+...+. .-..++.+|++| ....+...+ ....++++.+++.++....+...+
T Consensus 120 ~~~KVvIIdea~~Ls~~a~naLLK~LE-epp~~tifIL~tt~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia 193 (614)
T PRK14971 120 GKYKIYIIDEVHMLSQAAFNAFLKTLE-EPPSYAIFILATTEKHKILPTILSRCQIFDFNRIQVADIVNHLQYVA 193 (614)
T ss_pred CCcEEEEEECcccCCHHHHHHHHHHHh-CCCCCeEEEEEeCCchhchHHHHhhhheeecCCCCHHHHHHHHHHHH
Confidence 455578999987556667777887776 444566665554 444444332 234679999999999888887655
No 89
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=57.87 E-value=45 Score=27.00 Aligned_cols=156 Identities=15% Similarity=0.067 Sum_probs=81.1
Q ss_pred eEEEEeCCCCCHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHcCC-CcEEEEEcCCCCC---ChhhHHHHh---hhcc
Q 028606 8 QASTYVGGDFDALKVTKSILKSIATDQPVDDNDLNLLQGKLKKQFSG-KKFLLFLDDLWNV---NYDLWSYLC---RPLV 80 (206)
Q Consensus 8 ~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~l~~~L~~-kr~LlVLDdv~~~---~~~~~~~l~---~~l~ 80 (206)
++-|.+...++...+...|+.++ +.......+.......+...++. +-=+||+|.+-+. +...=..+. ..+.
T Consensus 98 Vv~vq~P~~p~~~~~Y~~IL~~l-gaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~ 176 (302)
T PF05621_consen 98 VVYVQMPPEPDERRFYSAILEAL-GAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLG 176 (302)
T ss_pred EEEEecCCCCChHHHHHHHHHHh-CcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHh
Confidence 55677888999999999999999 66555556666666676677754 3457889988531 111212222 2223
Q ss_pred CCCCCCcEEEEeCCChHHHHhhC-----CCCceeCCCCCH-HHHHHHHHHhh--cCCCCCCCCchhhhcchhhcCCCCCH
Q 028606 81 ESCAPGSKDIITARFTDVATMVA-----TTSTYPLECLSD-EDCLRILAEQS--LGTTDFSNDTEPILGPSDRSSHRMDI 152 (206)
Q Consensus 81 ~~~~~gs~IivTTr~~~v~~~~~-----~~~~~~l~~L~~-~~~~~Lf~~~a--f~~~~~~~~~~~~lg~~l~~~~~~~~ 152 (206)
+.-.=+-|.+-|+..--+-... ....+.+..-.. ++...|+.... +.-..+.......++..+........
T Consensus 177 -NeL~ipiV~vGt~~A~~al~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~i 255 (302)
T PF05621_consen 177 -NELQIPIVGVGTREAYRALRTDPQLASRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLI 255 (302)
T ss_pred -hccCCCeEEeccHHHHHHhccCHHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCch
Confidence 2222344555454333221111 123455554433 34444543322 12222233333445555555555555
Q ss_pred HHHHHHHhhchhh
Q 028606 153 EEDNNIEDHQAQE 165 (206)
Q Consensus 153 ~~w~~~~~~~~~~ 165 (206)
.+-.+++....-.
T Consensus 256 G~l~~ll~~aA~~ 268 (302)
T PF05621_consen 256 GELSRLLNAAAIA 268 (302)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555554433
No 90
>CHL00181 cbbX CbbX; Provisional
Probab=57.40 E-value=65 Score=25.73 Aligned_cols=70 Identities=11% Similarity=0.084 Sum_probs=44.8
Q ss_pred EEEEEcCCCCC---------ChhhHHHHhhhccCCCCCCcEEEEeCCChHHHHhhC--------CCCceeCCCCCHHHHH
Q 028606 57 FLLFLDDLWNV---------NYDLWSYLCRPLVESCAPGSKDIITARFTDVATMVA--------TTSTYPLECLSDEDCL 119 (206)
Q Consensus 57 ~LlVLDdv~~~---------~~~~~~~l~~~l~~~~~~gs~IivTTr~~~v~~~~~--------~~~~~~l~~L~~~~~~ 119 (206)
-+|++|++..- ..+..+.+...+. +...+.+||+++....+..... ....+.+++++.++..
T Consensus 124 gVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me-~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~ 202 (287)
T CHL00181 124 GVLFIDEAYYLYKPDNERDYGSEAIEILLQVME-NQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELL 202 (287)
T ss_pred CEEEEEccchhccCCCccchHHHHHHHHHHHHh-cCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHH
Confidence 48899998520 1223344555555 4455667888876554432221 1347899999999999
Q ss_pred HHHHHhhc
Q 028606 120 RILAEQSL 127 (206)
Q Consensus 120 ~Lf~~~af 127 (206)
+++...+-
T Consensus 203 ~I~~~~l~ 210 (287)
T CHL00181 203 QIAKIMLE 210 (287)
T ss_pred HHHHHHHH
Confidence 99888773
No 91
>TIGR00340 zpr1_rel ZPR1-related zinc finger protein. A model ZPR1_znf (TIGR00310) has been created to describe the domain shared by this protein and ZPR1.
Probab=56.71 E-value=30 Score=25.27 Aligned_cols=47 Identities=19% Similarity=0.337 Sum_probs=31.5
Q ss_pred CHHHHHHHHHHHhhcCCCCCC------CCHHHHHHHHHHHcCC-CcEEEEEcCCC
Q 028606 18 DALKVTKSILKSIATDQPVDD------NDLNLLQGKLKKQFSG-KKFLLFLDDLW 65 (206)
Q Consensus 18 ~~~~i~~~i~~~l~~~~~~~~------~~~~~~~~~l~~~L~~-kr~LlVLDdv~ 65 (206)
+++.++..+...+ ....... ...++..++|++...+ ..|-|||||-.
T Consensus 95 TVEGlL~~i~~~L-~~~~~~~~~~e~~~k~~~~l~kL~~~~~g~~pfTlIldDP~ 148 (163)
T TIGR00340 95 NIEGVLERIEEVL-DTASDDDEDDEAVKKCEEILKRIREVIEGKFKFTLIIEDPF 148 (163)
T ss_pred ehHhHHHHHHHHH-HHhhhcccCHHHHHHHHHHHHHHHHHHhCCCCeEEEEECCC
Confidence 6888899888887 3221111 1134556777778877 48999999975
No 92
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=56.28 E-value=18 Score=30.05 Aligned_cols=44 Identities=27% Similarity=0.244 Sum_probs=29.8
Q ss_pred CCCcEEEEEcCCCCC-ChhhHHHHhhhccCCCCCCcEEEEeCCChHHH
Q 028606 53 SGKKFLLFLDDLWNV-NYDLWSYLCRPLVESCAPGSKDIITARFTDVA 99 (206)
Q Consensus 53 ~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~~~~gs~IivTTr~~~v~ 99 (206)
.+..-+++|||+-.+ +...-+.+...+. .. |..+++||.+.+..
T Consensus 300 ~~~~pilLLDD~~seLD~~~r~~l~~~l~-~~--~~qv~it~~~~~~~ 344 (365)
T TIGR00611 300 GGEYPILLLDDVASELDDQRRRLLAELLQ-SL--GVQVFVTAISLDHL 344 (365)
T ss_pred cCCCCEEEEcCchhccCHHHHHHHHHHHh-hc--CCEEEEEecChhhc
Confidence 456789999999643 4445556666665 22 56889998876543
No 93
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=55.88 E-value=53 Score=26.79 Aligned_cols=70 Identities=13% Similarity=0.148 Sum_probs=47.6
Q ss_pred CCcEEEEEcCCCCCChhhHHHHhhhccCCCCCCcEEEEeCCCh-HHHHhh-CCCCceeCCCCCHHHHHHHHHH
Q 028606 54 GKKFLLFLDDLWNVNYDLWSYLCRPLVESCAPGSKDIITARFT-DVATMV-ATTSTYPLECLSDEDCLRILAE 124 (206)
Q Consensus 54 ~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~~gs~IivTTr~~-~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~ 124 (206)
+++=++|+|++...+...-..+...+- .-..++.+|++|.+. .+...+ +....+.+.+++.++....+..
T Consensus 112 g~~kV~iI~~ae~m~~~AaNaLLKtLE-EPp~~~~fiL~~~~~~~lLpTIrSRCq~i~~~~~~~~~~~~~L~~ 183 (319)
T PRK08769 112 GIAQVVIVDPADAINRAACNALLKTLE-EPSPGRYLWLISAQPARLPATIRSRCQRLEFKLPPAHEALAWLLA 183 (319)
T ss_pred CCcEEEEeccHhhhCHHHHHHHHHHhh-CCCCCCeEEEEECChhhCchHHHhhheEeeCCCcCHHHHHHHHHH
Confidence 456688899987555555666666766 445577777777653 344333 3345788999999998887765
No 94
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=55.52 E-value=55 Score=28.41 Aligned_cols=73 Identities=10% Similarity=0.122 Sum_probs=48.8
Q ss_pred CCCcEEEEEcCCCCCChhhHHHHhhhccCCCCCCcEEEEeCC-ChHHHHhh-CCCCceeCCCCCHHHHHHHHHHhh
Q 028606 53 SGKKFLLFLDDLWNVNYDLWSYLCRPLVESCAPGSKDIITAR-FTDVATMV-ATTSTYPLECLSDEDCLRILAEQS 126 (206)
Q Consensus 53 ~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~~gs~IivTTr-~~~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~a 126 (206)
.++.-++|+|++..-+...++.+...+. .......+|++|. ...+...+ .....|.+.+++.++..+.+.+.+
T Consensus 119 ~g~~KV~IIDEah~Ls~~A~NALLKtLE-EPp~~viFILaTte~~kI~~TI~SRCq~~~f~~ls~~~i~~~L~~i~ 193 (484)
T PRK14956 119 GGKYKVYIIDEVHMLTDQSFNALLKTLE-EPPAHIVFILATTEFHKIPETILSRCQDFIFKKVPLSVLQDYSEKLC 193 (484)
T ss_pred cCCCEEEEEechhhcCHHHHHHHHHHhh-cCCCceEEEeecCChhhccHHHHhhhheeeecCCCHHHHHHHHHHHH
Confidence 3556689999997556777888877776 4344555554554 34443332 234579999999988888777765
No 95
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=55.09 E-value=1.3e+02 Score=25.55 Aligned_cols=83 Identities=19% Similarity=0.284 Sum_probs=51.2
Q ss_pred CHHHHHHHHHHH--cCCCcEEEEEcCCCCCChhhHHHHhhhccCCCCCCcEEEE--eCCChH---HHHhhCCCCceeCCC
Q 028606 40 DLNLLQGKLKKQ--FSGKKFLLFLDDLWNVNYDLWSYLCRPLVESCAPGSKDII--TARFTD---VATMVATTSTYPLEC 112 (206)
Q Consensus 40 ~~~~~~~~l~~~--L~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~~gs~Iiv--TTr~~~---v~~~~~~~~~~~l~~ 112 (206)
+...+.+.-++. +.++|..|++|.|-.=+..+-+ ..+| .-..|+.++| ||.|.+ .+..+....++-++.
T Consensus 205 dvR~ife~aq~~~~l~krkTilFiDEiHRFNksQQD---~fLP-~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLek 280 (554)
T KOG2028|consen 205 DVRDIFEQAQNEKSLTKRKTILFIDEIHRFNKSQQD---TFLP-HVENGDITLIGATTENPSFQLNAALLSRCRVFVLEK 280 (554)
T ss_pred HHHHHHHHHHHHHhhhcceeEEEeHHhhhhhhhhhh---cccc-eeccCceEEEecccCCCccchhHHHHhccceeEecc
Confidence 444444444443 4678899999988521222222 2345 4557876665 565544 233444456899999
Q ss_pred CCHHHHHHHHHHhh
Q 028606 113 LSDEDCLRILAEQS 126 (206)
Q Consensus 113 L~~~~~~~Lf~~~a 126 (206)
|..++-..++.+..
T Consensus 281 L~~n~v~~iL~rai 294 (554)
T KOG2028|consen 281 LPVNAVVTILMRAI 294 (554)
T ss_pred CCHHHHHHHHHHHH
Confidence 99999988888743
No 96
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=53.93 E-value=63 Score=28.36 Aligned_cols=72 Identities=11% Similarity=0.132 Sum_probs=45.5
Q ss_pred CCcEEEEEcCCCCCChhhHHHHhhhccCCCCCCcEEEEeCCCh-HHHHhh-CCCCceeCCCCCHHHHHHHHHHhh
Q 028606 54 GKKFLLFLDDLWNVNYDLWSYLCRPLVESCAPGSKDIITARFT-DVATMV-ATTSTYPLECLSDEDCLRILAEQS 126 (206)
Q Consensus 54 ~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~~gs~IivTTr~~-~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~a 126 (206)
+++-++|+|++...+....+.+...+. .......+|++|.+. .+...+ .....+++++++.++....+.+.+
T Consensus 118 ~~~kVvIIDEad~ls~~a~naLLK~LE-epp~~~~fIL~t~d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il 191 (527)
T PRK14969 118 GRFKVYIIDEVHMLSKSAFNAMLKTLE-EPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHIL 191 (527)
T ss_pred CCceEEEEcCcccCCHHHHHHHHHHHh-CCCCCEEEEEEeCChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 556689999997545555677777776 444566666665443 332221 112468888898888877776644
No 97
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=52.54 E-value=97 Score=26.61 Aligned_cols=72 Identities=11% Similarity=0.161 Sum_probs=45.5
Q ss_pred CCcEEEEEcCCCCCChhhHHHHhhhccCCCCCCcEEEEeCCC-hHHHHh-hCCCCceeCCCCCHHHHHHHHHHhh
Q 028606 54 GKKFLLFLDDLWNVNYDLWSYLCRPLVESCAPGSKDIITARF-TDVATM-VATTSTYPLECLSDEDCLRILAEQS 126 (206)
Q Consensus 54 ~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~~gs~IivTTr~-~~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~a 126 (206)
+++-++|+|++...+....+.+...+. +...+..+|++|.. ..+... ......+.++++++++....+...+
T Consensus 120 ~~~kvvIIdead~lt~~~~n~LLk~lE-ep~~~~~~Il~t~~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~ 193 (451)
T PRK06305 120 SRYKIYIIDEVHMLTKEAFNSLLKTLE-EPPQHVKFFLATTEIHKIPGTILSRCQKMHLKRIPEETIIDKLALIA 193 (451)
T ss_pred CCCEEEEEecHHhhCHHHHHHHHHHhh-cCCCCceEEEEeCChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHH
Confidence 566788999886434445566666666 44446666666543 333222 2224578999999998887777655
No 98
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=50.54 E-value=1.3e+02 Score=24.04 Aligned_cols=69 Identities=13% Similarity=0.119 Sum_probs=39.4
Q ss_pred CCcEEEEEcCCCCC-ChhhHHHHhhhccCCCCCCcEEEEeCCChHH-HHhh-CCCCceeCCCCCHHHHHHHHH
Q 028606 54 GKKFLLFLDDLWNV-NYDLWSYLCRPLVESCAPGSKDIITARFTDV-ATMV-ATTSTYPLECLSDEDCLRILA 123 (206)
Q Consensus 54 ~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~~~~gs~IivTTr~~~v-~~~~-~~~~~~~l~~L~~~~~~~Lf~ 123 (206)
+.+-++|+||+... .....+.+...+. ....++++|+||..... ...+ +....+.++..+.++..+++.
T Consensus 99 ~~~~vliiDe~d~l~~~~~~~~L~~~le-~~~~~~~~Ilt~n~~~~l~~~l~sR~~~i~~~~p~~~~~~~il~ 170 (316)
T PHA02544 99 GGGKVIIIDEFDRLGLADAQRHLRSFME-AYSKNCSFIITANNKNGIIEPLRSRCRVIDFGVPTKEEQIEMMK 170 (316)
T ss_pred CCCeEEEEECcccccCHHHHHHHHHHHH-hcCCCceEEEEcCChhhchHHHHhhceEEEeCCCCHHHHHHHHH
Confidence 34567899999733 2222333444444 44567789998875431 1111 122457777778877765544
No 99
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=49.72 E-value=34 Score=25.63 Aligned_cols=62 Identities=11% Similarity=0.051 Sum_probs=36.9
Q ss_pred HHHHcCCCcEEEEEcCCCCC-ChhhHHHHhhhccCCCCCCcEEEEeCCChHHHHhhCCCCceeCCC
Q 028606 48 LKKQFSGKKFLLFLDDLWNV-NYDLWSYLCRPLVESCAPGSKDIITARFTDVATMVATTSTYPLEC 112 (206)
Q Consensus 48 l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~~~~gs~IivTTr~~~v~~~~~~~~~~~l~~ 112 (206)
+-..+..+.=+++||.--.. +....+.+...+......|..||++|.+.+.... ++++.+..
T Consensus 138 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~---~~~~~~~~ 200 (207)
T PRK13539 138 LARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG---ARELDLGP 200 (207)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc---CcEEeecC
Confidence 44455566778899976432 4444445554443112347789999988776554 45566654
No 100
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=49.55 E-value=78 Score=27.59 Aligned_cols=72 Identities=14% Similarity=0.259 Sum_probs=48.9
Q ss_pred CCcEEEEEcCCCCCChhhHHHHhhhccCCCCCCcEEEEeCC-ChHHHHhh-CCCCceeCCCCCHHHHHHHHHHhh
Q 028606 54 GKKFLLFLDDLWNVNYDLWSYLCRPLVESCAPGSKDIITAR-FTDVATMV-ATTSTYPLECLSDEDCLRILAEQS 126 (206)
Q Consensus 54 ~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~~gs~IivTTr-~~~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~a 126 (206)
+++=++|+|++..-+....+.+...+. .-....++|++|. ...+...+ .....+.+++++.++....+...+
T Consensus 115 ~~~KVvIIDEah~Ls~~A~NaLLK~LE-ePp~~v~fIlatte~~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia 188 (491)
T PRK14964 115 SKFKVYIIDEVHMLSNSAFNALLKTLE-EPAPHVKFILATTEVKKIPVTIISRCQRFDLQKIPTDKLVEHLVDIA 188 (491)
T ss_pred CCceEEEEeChHhCCHHHHHHHHHHHh-CCCCCeEEEEEeCChHHHHHHHHHhheeeecccccHHHHHHHHHHHH
Confidence 456689999986445566777777776 5455666666654 34444333 234678899999988888887766
No 101
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=48.45 E-value=49 Score=28.64 Aligned_cols=110 Identities=16% Similarity=0.137 Sum_probs=55.9
Q ss_pred CHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHcCCCc--EEEEEcCCCCCChhhHHHHhhhccCCCCCCcEEEEeCCC
Q 028606 18 DALKVTKSILKSIATDQPVDDNDLNLLQGKLKKQFSGKK--FLLFLDDLWNVNYDLWSYLCRPLVESCAPGSKDIITARF 95 (206)
Q Consensus 18 ~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~l~~~L~~kr--~LlVLDdv~~~~~~~~~~l~~~l~~~~~~gs~IivTTr~ 95 (206)
....++..|...+...... .....+....+.+...+.+ +|+|||.++.-....-..+...|....-+++++|+.---
T Consensus 218 ~~~aiF~kI~~~~~q~~~s-~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiA 296 (529)
T KOG2227|consen 218 EASAIFKKIFSSLLQDLVS-PGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIA 296 (529)
T ss_pred chHHHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeeh
Confidence 3455566665554111111 1122455667777776554 899999775210001111222222123447776665321
Q ss_pred hH-------HHHhh---C-CCCceeCCCCCHHHHHHHHHHhhcC
Q 028606 96 TD-------VATMV---A-TTSTYPLECLSDEDCLRILAEQSLG 128 (206)
Q Consensus 96 ~~-------v~~~~---~-~~~~~~l~~L~~~~~~~Lf~~~af~ 128 (206)
.. +.... + .......++-+.++-.+++..+.-.
T Consensus 297 NslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~ 340 (529)
T KOG2227|consen 297 NSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSE 340 (529)
T ss_pred hhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhc
Confidence 11 11111 1 1346778888999999999988743
No 102
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=48.13 E-value=1e+02 Score=25.32 Aligned_cols=71 Identities=13% Similarity=0.042 Sum_probs=50.1
Q ss_pred CCcEEEEEcCCCCCChhhHHHHhhhccCCCCCCcEEEEeCCChH-HHHh-hCCCCceeCCCCCHHHHHHHHHHh
Q 028606 54 GKKFLLFLDDLWNVNYDLWSYLCRPLVESCAPGSKDIITARFTD-VATM-VATTSTYPLECLSDEDCLRILAEQ 125 (206)
Q Consensus 54 ~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~~gs~IivTTr~~~-v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~ 125 (206)
+++=.+|+|++...+...-..+...+- .-..++.+|++|.+.+ +... .+..+.+.+.+++.++....+...
T Consensus 107 g~~kV~iI~~ae~m~~~AaNaLLKtLE-EPp~~t~fiL~t~~~~~lLpTIrSRCq~~~~~~~~~~~~~~~L~~~ 179 (334)
T PRK07993 107 GGAKVVWLPDAALLTDAAANALLKTLE-EPPENTWFFLACREPARLLATLRSRCRLHYLAPPPEQYALTWLSRE 179 (334)
T ss_pred CCceEEEEcchHhhCHHHHHHHHHHhc-CCCCCeEEEEEECChhhChHHHHhccccccCCCCCHHHHHHHHHHc
Confidence 556678899887556667777777776 5556777777776544 5544 333567899999999988877653
No 103
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=47.88 E-value=83 Score=24.53 Aligned_cols=70 Identities=10% Similarity=0.113 Sum_probs=40.7
Q ss_pred cEEEEEcCCCCC--------ChhhHHHHhhhccCCCCCCcEEEEeCCChHHHHh-------hCC-CCceeCCCCCHHHHH
Q 028606 56 KFLLFLDDLWNV--------NYDLWSYLCRPLVESCAPGSKDIITARFTDVATM-------VAT-TSTYPLECLSDEDCL 119 (206)
Q Consensus 56 r~LlVLDdv~~~--------~~~~~~~l~~~l~~~~~~gs~IivTTr~~~v~~~-------~~~-~~~~~l~~L~~~~~~ 119 (206)
.-+|++|++..- .....+.+...+. .......+|+++...+.... ... ...+.+++++.++-.
T Consensus 106 ~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e-~~~~~~~vila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~ 184 (261)
T TIGR02881 106 GGVLFIDEAYSLARGGEKDFGKEAIDTLVKGME-DNRNEFVLILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELM 184 (261)
T ss_pred CCEEEEechhhhccCCccchHHHHHHHHHHHHh-ccCCCEEEEecCCcchhHHHHhcChHHHhccceEEEECCCCHHHHH
Confidence 358899998620 1223444544444 33334456666554333111 111 235789999999999
Q ss_pred HHHHHhh
Q 028606 120 RILAEQS 126 (206)
Q Consensus 120 ~Lf~~~a 126 (206)
+++.+.+
T Consensus 185 ~Il~~~~ 191 (261)
T TIGR02881 185 EIAERMV 191 (261)
T ss_pred HHHHHHH
Confidence 9998777
No 104
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=47.85 E-value=90 Score=25.50 Aligned_cols=70 Identities=17% Similarity=0.169 Sum_probs=43.4
Q ss_pred CcEEEEEcCCCCCChhhHHHHhhhccCCCCCCcEEEEeCCChH-HHHhhC-CCCceeCCCCCHHHHHHHHHHh
Q 028606 55 KKFLLFLDDLWNVNYDLWSYLCRPLVESCAPGSKDIITARFTD-VATMVA-TTSTYPLECLSDEDCLRILAEQ 125 (206)
Q Consensus 55 kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~~gs~IivTTr~~~-v~~~~~-~~~~~~l~~L~~~~~~~Lf~~~ 125 (206)
++=.+|+|++...+...-..+...+. ....+..+|++|.+.+ +...+. ....+.+.+++.++..+.+...
T Consensus 113 ~~kV~iiEp~~~Ld~~a~naLLk~LE-ep~~~~~~Ilvth~~~~ll~ti~SRc~~~~~~~~~~~~~~~~L~~~ 184 (325)
T PRK08699 113 GLRVILIHPAESMNLQAANSLLKVLE-EPPPQVVFLLVSHAADKVLPTIKSRCRKMVLPAPSHEEALAYLRER 184 (325)
T ss_pred CceEEEEechhhCCHHHHHHHHHHHH-hCcCCCEEEEEeCChHhChHHHHHHhhhhcCCCCCHHHHHHHHHhc
Confidence 33344557776445555566666665 3334566777777654 443332 2457889999999988877653
No 105
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=46.92 E-value=89 Score=22.48 Aligned_cols=53 Identities=15% Similarity=0.150 Sum_probs=32.4
Q ss_pred HHHHcCCCcEEEEEcCCCCC-ChhhHHHHhhhccCCCCCCcEEEEeCCChHHHHh
Q 028606 48 LKKQFSGKKFLLFLDDLWNV-NYDLWSYLCRPLVESCAPGSKDIITARFTDVATM 101 (206)
Q Consensus 48 l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~~~~gs~IivTTr~~~v~~~ 101 (206)
+-..+..+.=+++||.--.. +...-+.+...+. ....+..||++|.+.+....
T Consensus 107 la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~-~~~~~~tii~~sh~~~~~~~ 160 (171)
T cd03228 107 IARALLRDPPILILDEATSALDPETEALILEALR-ALAKGKTVIVIAHRLSTIRD 160 (171)
T ss_pred HHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHH-HhcCCCEEEEEecCHHHHHh
Confidence 44445566678899986532 4444444544444 22235778899988777654
No 106
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=45.94 E-value=80 Score=27.62 Aligned_cols=72 Identities=13% Similarity=0.096 Sum_probs=45.5
Q ss_pred CCcEEEEEcCCCCCChhhHHHHhhhccCCCCCCcEEEEeCCCh-HHHHhh-CCCCceeCCCCCHHHHHHHHHHhh
Q 028606 54 GKKFLLFLDDLWNVNYDLWSYLCRPLVESCAPGSKDIITARFT-DVATMV-ATTSTYPLECLSDEDCLRILAEQS 126 (206)
Q Consensus 54 ~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~~gs~IivTTr~~-~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~a 126 (206)
++.-++|+|++...+....+.+...+. ......++|++|.+. .+...+ +....+++++++.++....+...+
T Consensus 118 ~~~kV~iIDE~~~ls~~a~naLLk~LE-epp~~~~fIlattd~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il 191 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGHSFNALLKTLE-EPPSHVKFILATTDHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLL 191 (509)
T ss_pred CCcEEEEEEChHhcCHHHHHHHHHHHh-ccCCCeEEEEEECChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHH
Confidence 456688899997556667777777776 544567777665543 333222 223567888888887666554443
No 107
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=45.79 E-value=1.5e+02 Score=23.49 Aligned_cols=71 Identities=15% Similarity=0.230 Sum_probs=44.0
Q ss_pred CcEEEEEcCCCCCChhhHHHHhhhccCCCCCCcEEEEeCCChH-HHHhh-CCCCceeCCCCCHHHHHHHHHHhh
Q 028606 55 KKFLLFLDDLWNVNYDLWSYLCRPLVESCAPGSKDIITARFTD-VATMV-ATTSTYPLECLSDEDCLRILAEQS 126 (206)
Q Consensus 55 kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~~gs~IivTTr~~~-v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~a 126 (206)
.+-++++|++..-.....+.+...+. .....+++|+++.... +.... .....+.+++++.++....+...+
T Consensus 102 ~~~vviiDe~~~l~~~~~~~L~~~le-~~~~~~~lIl~~~~~~~l~~~l~sr~~~~~~~~l~~~ei~~~l~~~~ 174 (319)
T PRK00440 102 PFKIIFLDEADNLTSDAQQALRRTME-MYSQNTRFILSCNYSSKIIDPIQSRCAVFRFSPLKKEAVAERLRYIA 174 (319)
T ss_pred CceEEEEeCcccCCHHHHHHHHHHHh-cCCCCCeEEEEeCCccccchhHHHHhheeeeCCCCHHHHHHHHHHHH
Confidence 35689999986434444556666555 4445667777764322 11111 123468899999999888887766
No 108
>smart00709 Zpr1 Duplicated domain in the epidermal growth factor- and elongation factor-1alpha-binding protein Zpr1. Also present in archaeal proteins.
Probab=45.65 E-value=25 Score=25.59 Aligned_cols=47 Identities=23% Similarity=0.355 Sum_probs=31.0
Q ss_pred CHHHHHHHHHHHhhcCC-CC--CC------CCHHHHHHHHHHHcCC-CcEEEEEcCCC
Q 028606 18 DALKVTKSILKSIATDQ-PV--DD------NDLNLLQGKLKKQFSG-KKFLLFLDDLW 65 (206)
Q Consensus 18 ~~~~i~~~i~~~l~~~~-~~--~~------~~~~~~~~~l~~~L~~-kr~LlVLDdv~ 65 (206)
+++.++.++...+ ... .. .. ...++..++|++.+.+ ..|-|||||-.
T Consensus 97 TVEGlL~~i~~~L-~~~~~~~~~~~~~e~~~k~~~~~~~L~~~~~g~~~fTliidDP~ 153 (160)
T smart00709 97 TVEGLLSRVREVL-SQAIQETRDDSDPETKEKIDEFLEKLKELIEGKEPFTLILDDPA 153 (160)
T ss_pred ehHHHHHHHHHHH-HhhhhhhcccCCHHHHHHHHHHHHHHHHHHcCCCCEEEEEECCC
Confidence 6888999998887 332 11 11 1234455667777776 48999999975
No 109
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=45.29 E-value=1e+02 Score=27.53 Aligned_cols=72 Identities=15% Similarity=0.157 Sum_probs=48.6
Q ss_pred CCcEEEEEcCCCCCChhhHHHHhhhccCCCCCCcEEEE-eCCChHHHHhh-CCCCceeCCCCCHHHHHHHHHHhh
Q 028606 54 GKKFLLFLDDLWNVNYDLWSYLCRPLVESCAPGSKDII-TARFTDVATMV-ATTSTYPLECLSDEDCLRILAEQS 126 (206)
Q Consensus 54 ~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~~gs~Iiv-TTr~~~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~a 126 (206)
+++-++|+|++...+....+.|...+. .-.....+|+ ||....+...+ .....+.+..++.++..+.+...+
T Consensus 117 ~~~KVvIIDEah~Lt~~A~NALLK~LE-Epp~~~~fIL~tte~~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~ 190 (584)
T PRK14952 117 SRYRIFIVDEAHMVTTAGFNALLKIVE-EPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPRTMRALIARIC 190 (584)
T ss_pred CCceEEEEECCCcCCHHHHHHHHHHHh-cCCCCeEEEEEeCChHhhHHHHHHhceEEEeeCCCHHHHHHHHHHHH
Confidence 456688999986556777777877776 4445555555 44444444332 334679999999988887777655
No 110
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=44.95 E-value=50 Score=26.26 Aligned_cols=42 Identities=14% Similarity=-0.021 Sum_probs=27.7
Q ss_pred CcEEEEeCCChHHHHhhC--CCCceeCCCCCHHHHHHHHHHhhc
Q 028606 86 GSKDIITARFTDVATMVA--TTSTYPLECLSDEDCLRILAEQSL 127 (206)
Q Consensus 86 gs~IivTTr~~~v~~~~~--~~~~~~l~~L~~~~~~~Lf~~~af 127 (206)
.+-|..||+...+..... ....+.+++++.++..+++...+-
T Consensus 130 ~~li~~t~~~~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~ 173 (305)
T TIGR00635 130 FTLVGATTRAGMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAG 173 (305)
T ss_pred eEEEEecCCccccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHH
Confidence 444555666544333211 134678999999999999998873
No 111
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=44.66 E-value=1.7e+02 Score=23.81 Aligned_cols=70 Identities=13% Similarity=0.141 Sum_probs=48.1
Q ss_pred CCcEEEEEcCCCCCChhhHHHHhhhccCCCCCCcEEEEeCCChH-HHHhh-CCCCceeCCCCCHHHHHHHHHH
Q 028606 54 GKKFLLFLDDLWNVNYDLWSYLCRPLVESCAPGSKDIITARFTD-VATMV-ATTSTYPLECLSDEDCLRILAE 124 (206)
Q Consensus 54 ~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~~gs~IivTTr~~~-v~~~~-~~~~~~~l~~L~~~~~~~Lf~~ 124 (206)
+.+=++|+|++...+...-..+...+. .-..++.+|++|.+.. +...+ +....+.+.+++.++..+.+..
T Consensus 109 ~~~kvviI~~a~~~~~~a~NaLLK~LE-EPp~~~~~Il~t~~~~~ll~TIrSRc~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 109 SNKKVYIIEHADKMTASAANSLLKFLE-EPSGGTTAILLTENKHQILPTILSRCQVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred cCceEEEeehHhhhCHHHHHHHHHHhc-CCCCCceEEEEeCChHhCcHHHHhhceeeeCCCCCHHHHHHHHHH
Confidence 445568889887556666677777776 5556777777776543 33333 2356899999999998887765
No 112
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=44.63 E-value=99 Score=28.39 Aligned_cols=72 Identities=11% Similarity=0.147 Sum_probs=47.8
Q ss_pred CCcEEEEEcCCCCCChhhHHHHhhhccCCCCCCcEEE-EeCCChHHHHh-hCCCCceeCCCCCHHHHHHHHHHhh
Q 028606 54 GKKFLLFLDDLWNVNYDLWSYLCRPLVESCAPGSKDI-ITARFTDVATM-VATTSTYPLECLSDEDCLRILAEQS 126 (206)
Q Consensus 54 ~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~~gs~Ii-vTTr~~~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~a 126 (206)
+++-++|+|++...+...+..+...+. .......+| +||+...+... ......+.+.+++.++....+...+
T Consensus 117 g~~KV~IIDEa~~LT~~A~NALLKtLE-EPP~~tifILaTte~~KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il 190 (725)
T PRK07133 117 SKYKIYIIDEVHMLSKSAFNALLKTLE-EPPKHVIFILATTEVHKIPLTILSRVQRFNFRRISEDEIVSRLEFIL 190 (725)
T ss_pred CCCEEEEEEChhhCCHHHHHHHHHHhh-cCCCceEEEEEcCChhhhhHHHHhhceeEEccCCCHHHHHHHHHHHH
Confidence 566688999986546667777777766 433455545 44444445433 3334689999999999888777654
No 113
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=44.29 E-value=1e+02 Score=27.59 Aligned_cols=71 Identities=14% Similarity=0.256 Sum_probs=46.6
Q ss_pred CcEEEEEcCCCCCChhhHHHHhhhccCCCCCCcEEEEeCC-ChHHHHh-hCCCCceeCCCCCHHHHHHHHHHhh
Q 028606 55 KKFLLFLDDLWNVNYDLWSYLCRPLVESCAPGSKDIITAR-FTDVATM-VATTSTYPLECLSDEDCLRILAEQS 126 (206)
Q Consensus 55 kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~~gs~IivTTr-~~~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~a 126 (206)
++=++|+|++...+...+..+...+. .......+|++|. ...+... ......+.+.+++.++....+...+
T Consensus 119 ~~KVIIIDEad~Lt~~A~NaLLKtLE-EPp~~tvfIL~Tt~~~KLl~TI~SRcq~ieF~~Ls~~eL~~~L~~il 191 (605)
T PRK05896 119 KYKVYIIDEAHMLSTSAWNALLKTLE-EPPKHVVFIFATTEFQKIPLTIISRCQRYNFKKLNNSELQELLKSIA 191 (605)
T ss_pred CcEEEEEechHhCCHHHHHHHHHHHH-hCCCcEEEEEECCChHhhhHHHHhhhhhcccCCCCHHHHHHHHHHHH
Confidence 44469999987445666777777776 4444555655554 3334322 2334678999999999888887755
No 114
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=44.08 E-value=1.4e+02 Score=26.00 Aligned_cols=73 Identities=12% Similarity=0.214 Sum_probs=45.7
Q ss_pred CCCcEEEEEcCCCCCChhhHHHHhhhccCCCCCCcEEEEeC-CChHHHHh-hCCCCceeCCCCCHHHHHHHHHHhh
Q 028606 53 SGKKFLLFLDDLWNVNYDLWSYLCRPLVESCAPGSKDIITA-RFTDVATM-VATTSTYPLECLSDEDCLRILAEQS 126 (206)
Q Consensus 53 ~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~~gs~IivTT-r~~~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~a 126 (206)
.+++-++|+|++..-+....+.+...+. .......+|++| +...+... ......+.+.+++.++....+...+
T Consensus 117 ~~~~KVvIIDEad~Lt~~a~naLLk~LE-epp~~~v~Il~tt~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~ 191 (486)
T PRK14953 117 KGKYKVYIIDEAHMLTKEAFNALLKTLE-EPPPRTIFILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRIC 191 (486)
T ss_pred cCCeeEEEEEChhhcCHHHHHHHHHHHh-cCCCCeEEEEEECCHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHH
Confidence 3566789999986444555666766666 444455555555 33333322 2224578899999988877777655
No 115
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=44.02 E-value=1.2e+02 Score=24.39 Aligned_cols=69 Identities=10% Similarity=0.136 Sum_probs=45.3
Q ss_pred CCCcEEEEEcCCCCCChhhHHHHhhhccCCCCCCcEEEEeCCCh-HHHHhhCC-CCceeCCCCCHHHHHHHHH
Q 028606 53 SGKKFLLFLDDLWNVNYDLWSYLCRPLVESCAPGSKDIITARFT-DVATMVAT-TSTYPLECLSDEDCLRILA 123 (206)
Q Consensus 53 ~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~~gs~IivTTr~~-~v~~~~~~-~~~~~l~~L~~~~~~~Lf~ 123 (206)
.+++=.+|+||+...+......+...+- .-..++.+|++|.+. .+...+.+ ...+.+.+ +.++..+.+.
T Consensus 102 ~~~~kV~II~~ad~m~~~AaNaLLKtLE-EPp~~t~~iL~t~~~~~lLpTI~SRcq~i~f~~-~~~~~~~~L~ 172 (290)
T PRK07276 102 EGKQQVFIIKDADKMHVNAANSLLKVIE-EPQSEIYIFLLTNDENKVLPTIKSRTQIFHFPK-NEAYLIQLLE 172 (290)
T ss_pred cCCcEEEEeehhhhcCHHHHHHHHHHhc-CCCCCeEEEEEECChhhCchHHHHcceeeeCCC-cHHHHHHHHH
Confidence 3556678899988667777888888887 555566666666554 45544433 45677766 6666555554
No 116
>PRK07413 hypothetical protein; Validated
Probab=43.82 E-value=79 Score=26.54 Aligned_cols=51 Identities=16% Similarity=0.094 Sum_probs=32.3
Q ss_pred HHHHHHHHcCCC-cEEEEEcCCCCC---ChhhHHHHhhhccCCCCCCcEEEEeCCC
Q 028606 44 LQGKLKKQFSGK-KFLLFLDDLWNV---NYDLWSYLCRPLVESCAPGSKDIITARF 95 (206)
Q Consensus 44 ~~~~l~~~L~~k-r~LlVLDdv~~~---~~~~~~~l~~~l~~~~~~gs~IivTTr~ 95 (206)
..+..++.+... -=|+|||.+-.. ..-..+.+...+. ....+.-||+|-|+
T Consensus 293 ~~~~a~~~i~~g~ydlvVLDEi~~Al~~gli~~eevi~~L~-~rp~~~evVLTGR~ 347 (382)
T PRK07413 293 AWEIARAAIASGLYKTIILDELNPTVDLELLPVEPIVQTLL-RKPRDTEVIITGRC 347 (382)
T ss_pred HHHHHHHHHhCCCCCEEEEechHHHHHCCCccHHHHHHHHH-hCCCCCEEEEeCCC
Confidence 345555666544 459999998421 2223345555665 55567789999998
No 117
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=43.54 E-value=92 Score=23.64 Aligned_cols=61 Identities=13% Similarity=0.118 Sum_probs=36.9
Q ss_pred HHHHHcCCCcEEEEEcCCCCC-ChhhHHHHhhhccCCCCCCcEEEEeCCChHHHHhhCCCCceeC
Q 028606 47 KLKKQFSGKKFLLFLDDLWNV-NYDLWSYLCRPLVESCAPGSKDIITARFTDVATMVATTSTYPL 110 (206)
Q Consensus 47 ~l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~~~~gs~IivTTr~~~v~~~~~~~~~~~l 110 (206)
.+-..|..+.=+++||..-.. +...-+.+...+. ....|..||++|.+.+.... .+.++.+
T Consensus 147 ~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~-~~~~~~tiii~sh~~~~~~~--~d~~~~l 208 (236)
T cd03253 147 AIARAILKNPPILLLDEATSALDTHTEREIQAALR-DVSKGRTTIVIAHRLSTIVN--ADKIIVL 208 (236)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHH-HhcCCCEEEEEcCCHHHHHh--CCEEEEE
Confidence 355556677788999987533 4444455555554 22227778888888777654 3444433
No 118
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=43.52 E-value=1.3e+02 Score=23.72 Aligned_cols=48 Identities=21% Similarity=0.102 Sum_probs=29.3
Q ss_pred CCCcEEEEEcCCCCC-ChhhHHHHhhhccC---CCCCCcEEEEeCCChHHHH
Q 028606 53 SGKKFLLFLDDLWNV-NYDLWSYLCRPLVE---SCAPGSKDIITARFTDVAT 100 (206)
Q Consensus 53 ~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~---~~~~gs~IivTTr~~~v~~ 100 (206)
...||+|++||+.-+ +......++..+.- ....+-.|..||.-+++.+
T Consensus 104 ~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHLv~ 155 (249)
T PF05673_consen 104 RPYKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHLVP 155 (249)
T ss_pred CCCCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhccc
Confidence 346999999999643 55566777766640 1122345666666566543
No 119
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=43.49 E-value=91 Score=23.75 Aligned_cols=53 Identities=13% Similarity=0.144 Sum_probs=33.6
Q ss_pred HHHHcCCCcEEEEEcCCCCC-ChhhHHHHhhhccCCCCCCcEEEEeCCChHHHHh
Q 028606 48 LKKQFSGKKFLLFLDDLWNV-NYDLWSYLCRPLVESCAPGSKDIITARFTDVATM 101 (206)
Q Consensus 48 l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~~~~gs~IivTTr~~~v~~~ 101 (206)
+-..+..+.=+++||+.... +...-+.+...+. ....|..||++|.+.+.+..
T Consensus 150 la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~-~~~~g~~vi~~sh~~~~~~~ 203 (238)
T cd03249 150 IARALLRNPKILLLDEATSALDAESEKLVQEALD-RAMKGRTTIVIAHRLSTIRN 203 (238)
T ss_pred HHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHH-HhcCCCEEEEEeCCHHHHhh
Confidence 44445556668889987533 4555555655554 32257778999888776653
No 120
>PRK07413 hypothetical protein; Validated
Probab=43.40 E-value=61 Score=27.22 Aligned_cols=52 Identities=23% Similarity=0.126 Sum_probs=32.2
Q ss_pred HHHHHHHcCCCc-EEEEEcCCCCC---ChhhHHHHhhhccCCCCCCcEEEEeCCChH
Q 028606 45 QGKLKKQFSGKK-FLLFLDDLWNV---NYDLWSYLCRPLVESCAPGSKDIITARFTD 97 (206)
Q Consensus 45 ~~~l~~~L~~kr-~LlVLDdv~~~---~~~~~~~l~~~l~~~~~~gs~IivTTr~~~ 97 (206)
.+..++.+.... =|+|||.+-.. ..-.-+.+...+. ....+.-||+|-|+..
T Consensus 114 ~~~a~~~i~sg~ydlvILDEi~~Al~~gll~~eevl~~L~-~rP~~~evVLTGR~ap 169 (382)
T PRK07413 114 WDIAKGAIASGLYSVVVLDELNPVLDLGLLPVDEVVNTLK-SRPEGLEIIITGRAAP 169 (382)
T ss_pred HHHHHHHHhCCCCCEEEEehhHHHHHCCCccHHHHHHHHH-hCCCCCEEEEeCCCCC
Confidence 344555565544 59999988421 1222345555565 5556789999999754
No 121
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=43.16 E-value=89 Score=27.97 Aligned_cols=72 Identities=14% Similarity=0.201 Sum_probs=47.4
Q ss_pred CCcEEEEEcCCCCCChhhHHHHhhhccCCCCCCcEEEEeC-CChHHHHhh-CCCCceeCCCCCHHHHHHHHHHhh
Q 028606 54 GKKFLLFLDDLWNVNYDLWSYLCRPLVESCAPGSKDIITA-RFTDVATMV-ATTSTYPLECLSDEDCLRILAEQS 126 (206)
Q Consensus 54 ~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~~gs~IivTT-r~~~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~a 126 (206)
+++-++|+|++...+....+.|...+. .-..++++|++| ....+...+ .....+.+..++.++....+.+.+
T Consensus 131 a~~KVvIIDEad~Ls~~a~naLLKtLE-ePp~~~~fIl~tte~~kll~tI~SRcq~~~f~~l~~~el~~~L~~i~ 204 (598)
T PRK09111 131 ARYKVYIIDEVHMLSTAAFNALLKTLE-EPPPHVKFIFATTEIRKVPVTVLSRCQRFDLRRIEADVLAAHLSRIA 204 (598)
T ss_pred CCcEEEEEEChHhCCHHHHHHHHHHHH-hCCCCeEEEEEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHH
Confidence 445578999986445556777777766 444566666555 434444332 224578999999998888887765
No 122
>PRK09162 hypoxanthine-guanine phosphoribosyltransferase; Provisional
Probab=42.99 E-value=46 Score=24.57 Aligned_cols=33 Identities=12% Similarity=0.263 Sum_probs=19.3
Q ss_pred HcCCCcEEEEEcCCCCCChhhHHHHhhhccCCCCCC
Q 028606 51 QFSGKKFLLFLDDLWNVNYDLWSYLCRPLVESCAPG 86 (206)
Q Consensus 51 ~L~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~~g 86 (206)
.+++|++||| |||-. +-.-.......+. ..+..
T Consensus 94 ~v~gk~VLIV-DDIid-TG~Tl~~~~~~Lk-~~Ga~ 126 (181)
T PRK09162 94 SLKGRTVLVV-DDILD-EGHTLAAIRDRCL-EMGAA 126 (181)
T ss_pred CCCCCEEEEE-ccccC-cHHHHHHHHHHHH-hCCCC
Confidence 3566677665 98863 4445556666665 44333
No 123
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=42.98 E-value=61 Score=23.18 Aligned_cols=55 Identities=15% Similarity=0.221 Sum_probs=32.7
Q ss_pred CcEEEEEcCCCCC-ChhhHHHHhhhccCCCCCCcEEEEeCCChHHHHhhCCCCceeCC
Q 028606 55 KKFLLFLDDLWNV-NYDLWSYLCRPLVESCAPGSKDIITARFTDVATMVATTSTYPLE 111 (206)
Q Consensus 55 kr~LlVLDdv~~~-~~~~~~~l~~~l~~~~~~gs~IivTTr~~~v~~~~~~~~~~~l~ 111 (206)
+.-++++|+.-.. +...-..+...+......|+.+|++|.+.+..... +.++.+.
T Consensus 99 ~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~~~~~~~~--d~~~~l~ 154 (162)
T cd03227 99 PRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLPELAELA--DKLIHIK 154 (162)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhh--hhEEEEE
Confidence 6789999998643 33333333333321111278999999999887653 3444443
No 124
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=42.63 E-value=99 Score=23.42 Aligned_cols=61 Identities=10% Similarity=0.058 Sum_probs=35.3
Q ss_pred HHHHHcCCCcEEEEEcCCCCC-ChhhHHHHhhhccCCCCCCcEEEEeCCChHHHHhhCCCCceeC
Q 028606 47 KLKKQFSGKKFLLFLDDLWNV-NYDLWSYLCRPLVESCAPGSKDIITARFTDVATMVATTSTYPL 110 (206)
Q Consensus 47 ~l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~~~~gs~IivTTr~~~v~~~~~~~~~~~l 110 (206)
.+-..|..+.=+++||+.-.. +...-+.+...+. ....|..||++|.+.+.... .++++.+
T Consensus 148 ~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~-~~~~~~tii~~sh~~~~~~~--~d~v~~l 209 (234)
T cd03251 148 AIARALLKDPPILILDEATSALDTESERLVQAALE-RLMKNRTTFVIAHRLSTIEN--ADRIVVL 209 (234)
T ss_pred HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHH-HhcCCCEEEEEecCHHHHhh--CCEEEEe
Confidence 344445556668888986432 4444455555554 22246678888888776654 3444443
No 125
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=42.17 E-value=1e+02 Score=20.52 Aligned_cols=40 Identities=18% Similarity=0.113 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCCChhh-----------HHHHhhhccCCCC--CCcEEEEeCCC
Q 028606 56 KFLLFLDDLWNVNYDL-----------WSYLCRPLVESCA--PGSKDIITARF 95 (206)
Q Consensus 56 r~LlVLDdv~~~~~~~-----------~~~l~~~l~~~~~--~gs~IivTTr~ 95 (206)
+.+|++||+..-.... ...+...+..... .+..||.||..
T Consensus 59 ~~vl~iDe~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~ 111 (132)
T PF00004_consen 59 PCVLFIDEIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNS 111 (132)
T ss_dssp SEEEEEETGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESS
T ss_pred ceeeeeccchhcccccccccccccccccceeeecccccccccccceeEEeeCC
Confidence 7999999986322222 3444444441122 24567777765
No 126
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=41.84 E-value=56 Score=24.37 Aligned_cols=41 Identities=20% Similarity=0.097 Sum_probs=26.7
Q ss_pred EEEEEcCCCCC-ChhhHHHHhhhccCCCC-CCcEEEEeCCChHH
Q 028606 57 FLLFLDDLWNV-NYDLWSYLCRPLVESCA-PGSKDIITARFTDV 98 (206)
Q Consensus 57 ~LlVLDdv~~~-~~~~~~~l~~~l~~~~~-~gs~IivTTr~~~v 98 (206)
-++++|..-.. ++..-..+...+. ... .+..||+||.+..+
T Consensus 259 ~illiDEpE~~LHp~~q~~l~~~l~-~~~~~~~QviitTHSp~i 301 (303)
T PF13304_consen 259 SILLIDEPENHLHPSWQRKLIELLK-ELSKKNIQVIITTHSPFI 301 (303)
T ss_dssp SEEEEESSSTTSSHHHHHHHHHHHH-HTGGGSSEEEEEES-GGG
T ss_pred eEEEecCCcCCCCHHHHHHHHHHHH-hhCccCCEEEEeCccchh
Confidence 78899988532 4444455555554 333 48899999998764
No 127
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=41.35 E-value=1.1e+02 Score=22.18 Aligned_cols=54 Identities=9% Similarity=-0.076 Sum_probs=32.9
Q ss_pred HHHHHcCCCcEEEEEcCCCCC-ChhhHHHHhhhccCCCCCCcEEEEeCCChHHHHh
Q 028606 47 KLKKQFSGKKFLLFLDDLWNV-NYDLWSYLCRPLVESCAPGSKDIITARFTDVATM 101 (206)
Q Consensus 47 ~l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~~~~gs~IivTTr~~~v~~~ 101 (206)
.+-+.+..+.=+++||..... +...-+.+...+. ....|..||++|++.+....
T Consensus 108 ~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~-~~~~~~tii~~sh~~~~~~~ 162 (178)
T cd03247 108 ALARILLQDAPIVLLDEPTVGLDPITERQLLSLIF-EVLKDKTLIWITHHLTGIEH 162 (178)
T ss_pred HHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHH-HHcCCCEEEEEecCHHHHHh
Confidence 344455566677889987532 4444444544444 22346788999988877653
No 128
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=41.34 E-value=9.1 Score=28.20 Aligned_cols=39 Identities=31% Similarity=0.345 Sum_probs=17.8
Q ss_pred EEEEEcCCCCCChhhHHH--HhhhccCCCCCCcEEEEeCCCh
Q 028606 57 FLLFLDDLWNVNYDLWSY--LCRPLVESCAPGSKDIITARFT 96 (206)
Q Consensus 57 ~LlVLDdv~~~~~~~~~~--l~~~l~~~~~~gs~IivTTr~~ 96 (206)
=||||||+-......|.. +...+...-.++ .+|+||...
T Consensus 110 dlLilDDlG~~~~~~~~~~~l~~ii~~R~~~~-~tIiTSN~~ 150 (178)
T PF01695_consen 110 DLLILDDLGYEPLSEWEAELLFEIIDERYERK-PTIITSNLS 150 (178)
T ss_dssp SCEEEETCTSS---HHHHHCTHHHHHHHHHT--EEEEEESS-
T ss_pred cEecccccceeeecccccccchhhhhHhhccc-CeEeeCCCc
Confidence 477899996443344432 222222011223 577788743
No 129
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=40.90 E-value=1.5e+02 Score=27.25 Aligned_cols=33 Identities=18% Similarity=0.354 Sum_probs=22.9
Q ss_pred HHHHcCCC-cEEEEEcCCCCCChhhHHHHhhhcc
Q 028606 48 LKKQFSGK-KFLLFLDDLWNVNYDLWSYLCRPLV 80 (206)
Q Consensus 48 l~~~L~~k-r~LlVLDdv~~~~~~~~~~l~~~l~ 80 (206)
+.+.++.+ .-+++||++...+...+..+...+.
T Consensus 545 l~~~~~~~p~~VvllDEieka~~~~~~~Ll~~ld 578 (731)
T TIGR02639 545 LTEAVRKHPHCVLLLDEIEKAHPDIYNILLQVMD 578 (731)
T ss_pred HHHHHHhCCCeEEEEechhhcCHHHHHHHHHhhc
Confidence 44444444 4599999997667777777776665
No 130
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=40.21 E-value=2.1e+02 Score=23.52 Aligned_cols=72 Identities=11% Similarity=0.164 Sum_probs=44.9
Q ss_pred CCcEEEEEcCCCCCChhhHHHHhhhccCCCCCCcEEEEeCC-ChHHHHh-hCCCCceeCCCCCHHHHHHHHHHhh
Q 028606 54 GKKFLLFLDDLWNVNYDLWSYLCRPLVESCAPGSKDIITAR-FTDVATM-VATTSTYPLECLSDEDCLRILAEQS 126 (206)
Q Consensus 54 ~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~~gs~IivTTr-~~~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~a 126 (206)
+++-++++|++...+...++.+...+. .......+|++|. ...+... ......++..++++++....+...+
T Consensus 107 ~~~kiviIDE~~~l~~~~~~~ll~~le-~~~~~~~~Il~~~~~~kl~~~l~sr~~~v~~~~~~~~~l~~~l~~~~ 180 (367)
T PRK14970 107 GKYKIYIIDEVHMLSSAAFNAFLKTLE-EPPAHAIFILATTEKHKIIPTILSRCQIFDFKRITIKDIKEHLAGIA 180 (367)
T ss_pred CCcEEEEEeChhhcCHHHHHHHHHHHh-CCCCceEEEEEeCCcccCCHHHHhcceeEecCCccHHHHHHHHHHHH
Confidence 455679999986334455667766665 4334555665553 3233222 2233578899999999888887766
No 131
>KOG4354 consensus N-acetyl-gamma-glutamyl-phosphate reductase [Amino acid transport and metabolism]
Probab=40.20 E-value=29 Score=27.25 Aligned_cols=85 Identities=14% Similarity=0.101 Sum_probs=48.0
Q ss_pred EeCCCCCHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHcCCCcEEEEEcCCCCC--ChhhHHHHhhhccCCCCCCcEE
Q 028606 12 YVGGDFDALKVTKSILKSIATDQPVDDNDLNLLQGKLKKQFSGKKFLLFLDDLWNV--NYDLWSYLCRPLVESCAPGSKD 89 (206)
Q Consensus 12 ~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~~~~~~l~~~l~~~~~~gs~I 89 (206)
+|+-.+.+...++.|-..+ ..+.......+++...++..-.+..+.=|+|||--. ....-......|+ ...+|.|.
T Consensus 223 ~VaF~PHv~qwfqGi~lTi-~vpmkksv~~~elr~lyk~~YedE~lvhV~ddvPlvkdv~gsh~v~~ggF~-~~~~g~Ra 300 (340)
T KOG4354|consen 223 TVAFTPHVMQWFQGIQLTI-YVPMKKSVRTEELRQLYKTSYEDEELVHVLDDVPLVKDVRGSHYVHMGGFP-DRIPGDRA 300 (340)
T ss_pred ceeechhHHHHhhhceEEE-EEeecCcccHHHHHHHHHhhccCcceeeeeccccceeccCCcceeEecccc-CCCCCceE
Confidence 3333444444444443333 223334456677888888888899999999998521 1111112234577 77778665
Q ss_pred EEeCCChHH
Q 028606 90 IITARFTDV 98 (206)
Q Consensus 90 ivTTr~~~v 98 (206)
||.+....+
T Consensus 301 vii~tIDNL 309 (340)
T KOG4354|consen 301 VIISTIDNL 309 (340)
T ss_pred EEEEehhhh
Confidence 555544443
No 132
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=39.43 E-value=1.1e+02 Score=22.84 Aligned_cols=53 Identities=13% Similarity=0.086 Sum_probs=31.0
Q ss_pred HHHHcCCCcEEEEEcCCCCC-ChhhHHHHhhhccCCCCCCcEEEEeCCChHHHHh
Q 028606 48 LKKQFSGKKFLLFLDDLWNV-NYDLWSYLCRPLVESCAPGSKDIITARFTDVATM 101 (206)
Q Consensus 48 l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~~~~gs~IivTTr~~~v~~~ 101 (206)
+-+.+..+.=+++||+.... +...-+.+...+. ....+..||++|.+......
T Consensus 150 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~-~~~~~~tii~~sh~~~~~~~ 203 (221)
T cd03244 150 LARALLRKSKILVLDEATASVDPETDALIQKTIR-EAFKDCTVLTIAHRLDTIID 203 (221)
T ss_pred HHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHH-HhcCCCEEEEEeCCHHHHhh
Confidence 44445556668888987533 4444444544444 32335668888887766554
No 133
>PRK06921 hypothetical protein; Provisional
Probab=38.58 E-value=23 Score=27.96 Aligned_cols=40 Identities=20% Similarity=0.316 Sum_probs=20.8
Q ss_pred cEEEEEcCCCC-----CChhhHHH--HhhhccCCCCCCcEEEEeCCC
Q 028606 56 KFLLFLDDLWN-----VNYDLWSY--LCRPLVESCAPGSKDIITARF 95 (206)
Q Consensus 56 r~LlVLDdv~~-----~~~~~~~~--l~~~l~~~~~~gs~IivTTr~ 95 (206)
-=||||||+.. .....|.. +...+...-..+..+|+||..
T Consensus 178 ~dlLiIDDl~~~~~g~e~~t~~~~~~lf~iin~R~~~~k~tIitsn~ 224 (266)
T PRK06921 178 VEVLFIDDLFKPVNGKPRATEWQIEQMYSVLNYRYLNHKPILISSEL 224 (266)
T ss_pred CCEEEEeccccccCCCccCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 45899999931 11234432 333332111234568888864
No 134
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=38.15 E-value=1.1e+02 Score=22.94 Aligned_cols=55 Identities=18% Similarity=0.156 Sum_probs=32.4
Q ss_pred HHHHcCCCcEEEEEcCCCCC-ChhhHHHHhhhccCCCCCCcEEEEeCCChHHHHhh
Q 028606 48 LKKQFSGKKFLLFLDDLWNV-NYDLWSYLCRPLVESCAPGSKDIITARFTDVATMV 102 (206)
Q Consensus 48 l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~~~~gs~IivTTr~~~v~~~~ 102 (206)
+-..|....-+++||..-.. +...-+.+...+..-...|..||++|.+.+.+..+
T Consensus 160 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~ 215 (224)
T TIGR02324 160 IARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELV 215 (224)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence 34445555668899986432 44444444444431122477899999988766544
No 135
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=37.91 E-value=2.2e+02 Score=24.66 Aligned_cols=111 Identities=18% Similarity=0.128 Sum_probs=67.6
Q ss_pred eEEEEeCCCCCHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHcCCCcEEEEEcCCCCCChhhHHHHhhhccCCCCCCc
Q 028606 8 QASTYVGGDFDALKVTKSILKSIATDQPVDDNDLNLLQGKLKKQFSGKKFLLFLDDLWNVNYDLWSYLCRPLVESCAPGS 87 (206)
Q Consensus 8 ~~wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~~gs 87 (206)
++|| |..+.++..++..+++.- +.......+..++...+.+. .+=+|+-|+|-.+.+-.+.+.. +. ...++.
T Consensus 6 ~iLv-VDDd~~ir~~l~~~L~~~-G~~v~~a~~~~~al~~i~~~----~~~lvl~Di~mp~~~Gl~ll~~-i~-~~~~~~ 77 (464)
T COG2204 6 RILV-VDDDPDIRELLEQALELA-GYEVVTAESAEEALEALSES----PFDLVLLDIRMPGMDGLELLKE-IK-SRDPDL 77 (464)
T ss_pred CEEE-EeCCHHHHHHHHHHHHHc-CCeEEEeCCHHHHHHHHhcC----CCCEEEEecCCCCCchHHHHHH-HH-hhCCCC
Confidence 4555 677889999999999987 65555555655555444443 4667777777332222222221 22 223466
Q ss_pred EEEEeCCChHHHHhhCC----CCceeCCCCCHHHHHHHHHHhh
Q 028606 88 KDIITARFTDVATMVAT----TSTYPLECLSDEDCLRILAEQS 126 (206)
Q Consensus 88 ~IivTTr~~~v~~~~~~----~~~~~l~~L~~~~~~~Lf~~~a 126 (206)
.||+.|-..++.....+ ..-|-.+|++.+....+..+..
T Consensus 78 pVI~~Tg~g~i~~AV~A~k~GA~Dfl~KP~~~~~L~~~v~ral 120 (464)
T COG2204 78 PVIVMTGHGDIDTAVEALRLGAFDFLEKPFDLDRLLAIVERAL 120 (464)
T ss_pred CEEEEeCCCCHHHHHHHHhcCcceeeeCCCCHHHHHHHHHHHH
Confidence 67777776665444322 3457788899887777766544
No 136
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=37.89 E-value=47 Score=24.63 Aligned_cols=43 Identities=19% Similarity=0.209 Sum_probs=24.3
Q ss_pred CcEEEEEcCCCCC-ChhhHH-----HHhhhccCCCCCCcEEEEeCCChH
Q 028606 55 KKFLLFLDDLWNV-NYDLWS-----YLCRPLVESCAPGSKDIITARFTD 97 (206)
Q Consensus 55 kr~LlVLDdv~~~-~~~~~~-----~l~~~l~~~~~~gs~IivTTr~~~ 97 (206)
..-|||+|+++.- ....|. .....+......|.-|+++|++..
T Consensus 79 ~~~liviDEa~~~~~~r~~~~~~~~~~~~~l~~hRh~g~diiliTQ~~~ 127 (193)
T PF05707_consen 79 KGSLIVIDEAQNFFPSRSWKGKKVPEIIEFLAQHRHYGWDIILITQSPS 127 (193)
T ss_dssp TT-EEEETTGGGTSB---T-T----HHHHGGGGCCCTT-EEEEEES-GG
T ss_pred CCcEEEEECChhhcCCCccccccchHHHHHHHHhCcCCcEEEEEeCCHH
Confidence 6789999998532 333331 223444425667999999999765
No 137
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=37.64 E-value=73 Score=26.05 Aligned_cols=68 Identities=18% Similarity=0.283 Sum_probs=47.7
Q ss_pred EEEEcCCCCCChhhHHHHhhhccCCCCCCcEEEEeCCChHHH-H-hhCCCCceeCCCCCHHHHHHHHHHhh
Q 028606 58 LLFLDDLWNVNYDLWSYLCRPLVESCAPGSKDIITARFTDVA-T-MVATTSTYPLECLSDEDCLRILAEQS 126 (206)
Q Consensus 58 LlVLDdv~~~~~~~~~~l~~~l~~~~~~gs~IivTTr~~~v~-~-~~~~~~~~~l~~L~~~~~~~Lf~~~a 126 (206)
.+|||+......+.|..+...+. +....++.|+.+..-+.. . ....-+.|+.++|.+++...-+...+
T Consensus 132 iiIlDEcdsmtsdaq~aLrr~mE-~~s~~trFiLIcnylsrii~pi~SRC~KfrFk~L~d~~iv~rL~~Ia 201 (346)
T KOG0989|consen 132 IIILDECDSMTSDAQAALRRTME-DFSRTTRFILICNYLSRIIRPLVSRCQKFRFKKLKDEDIVDRLEKIA 201 (346)
T ss_pred EEEEechhhhhHHHHHHHHHHHh-ccccceEEEEEcCChhhCChHHHhhHHHhcCCCcchHHHHHHHHHHH
Confidence 67899988667888999998887 666677766666543322 1 11223468888999888877777666
No 138
>PRK08181 transposase; Validated
Probab=37.11 E-value=25 Score=27.85 Aligned_cols=39 Identities=33% Similarity=0.200 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCChhhH--HHHhhhccCCCCCCcEEEEeCCCh
Q 028606 57 FLLFLDDLWNVNYDLW--SYLCRPLVESCAPGSKDIITARFT 96 (206)
Q Consensus 57 ~LlVLDdv~~~~~~~~--~~l~~~l~~~~~~gs~IivTTr~~ 96 (206)
=||||||+-......+ +.+...+. ....+..+|+||+..
T Consensus 169 dLLIIDDlg~~~~~~~~~~~Lf~lin-~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 169 DLLILDDLAYVTKDQAETSVLFELIS-ARYERRSILITANQP 209 (269)
T ss_pred CEEEEeccccccCCHHHHHHHHHHHH-HHHhCCCEEEEcCCC
Confidence 4899999953322222 22333333 211123588888753
No 139
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=36.78 E-value=69 Score=25.98 Aligned_cols=41 Identities=15% Similarity=0.008 Sum_probs=27.0
Q ss_pred cEEEEeCCChHHHHhhC--CCCceeCCCCCHHHHHHHHHHhhc
Q 028606 87 SKDIITARFTDVATMVA--TTSTYPLECLSDEDCLRILAEQSL 127 (206)
Q Consensus 87 s~IivTTr~~~v~~~~~--~~~~~~l~~L~~~~~~~Lf~~~af 127 (206)
+-|..||+...+..... ....+.+++++.++..+++...+-
T Consensus 152 ~li~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~ 194 (328)
T PRK00080 152 TLIGATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSAR 194 (328)
T ss_pred eEEeecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHH
Confidence 44555666443332211 134688999999999999998873
No 140
>TIGR02759 TraD_Ftype type IV conjugative transfer system coupling protein TraD. The TraD protein performs an essential coupling function in conjugative type IV secretion systems. This protein sits at the inner membrane in contact with the assembled pilus and its scaffold as well as the relaxosome-plasmid DNA complex (through TraM).
Probab=36.39 E-value=1.1e+02 Score=27.21 Aligned_cols=42 Identities=12% Similarity=0.130 Sum_probs=28.7
Q ss_pred CCcEEEEEcCCCCCChhhHHHHhhhccCCCCCCcEEEEeCCChH
Q 028606 54 GKKFLLFLDDLWNVNYDLWSYLCRPLVESCAPGSKDIITARFTD 97 (206)
Q Consensus 54 ~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~~gs~IivTTr~~~ 97 (206)
++|++++||..+ +....+.+...+....+.|.++++.+++..
T Consensus 406 ~~rv~~ilDEf~--sl~klp~l~~~l~~~Rk~G~~~vl~~Qs~~ 447 (566)
T TIGR02759 406 DRRIWFIMDELP--SLHKLPDLDETIAEVRKFGGCYVLGIQSFA 447 (566)
T ss_pred CceEEEEEEcch--hhccchhHHHHHHHHhhcCCEEEEEeCCHH
Confidence 469999999998 666566665555523455777777776533
No 141
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=36.14 E-value=1.3e+02 Score=22.78 Aligned_cols=53 Identities=15% Similarity=0.208 Sum_probs=33.1
Q ss_pred HHHHcCCCcEEEEEcCCCCC-ChhhHHHHhhhccCCCCCCcEEEEeCCChHHHHh
Q 028606 48 LKKQFSGKKFLLFLDDLWNV-NYDLWSYLCRPLVESCAPGSKDIITARFTDVATM 101 (206)
Q Consensus 48 l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~~~~gs~IivTTr~~~v~~~ 101 (206)
+-..+..+.=+++||+.-.. +....+.+...+. ....|..||++|.+.+....
T Consensus 149 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~-~~~~~~tiii~sH~~~~~~~ 202 (237)
T cd03252 149 IARALIHNPRILIFDEATSALDYESEHAIMRNMH-DICAGRTVIIIAHRLSTVKN 202 (237)
T ss_pred HHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHH-HhcCCCEEEEEeCCHHHHHh
Confidence 44445556668999987532 4444455555554 32347789999998887654
No 142
>PRK00304 hypothetical protein; Provisional
Probab=36.00 E-value=1.1e+02 Score=19.15 Aligned_cols=29 Identities=10% Similarity=0.211 Sum_probs=24.4
Q ss_pred CCCCHHHHHHHHHHHcCCCcEEEEEcCCC
Q 028606 37 DDNDLNLLQGKLKKQFSGKKFLLFLDDLW 65 (206)
Q Consensus 37 ~~~~~~~~~~~l~~~L~~kr~LlVLDdv~ 65 (206)
...+++.....++..|+....+||.|...
T Consensus 30 ~E~sL~~kv~qv~~qL~~G~~vIvfse~~ 58 (75)
T PRK00304 30 DETPLETRVLRVRQALTKGQAVILFDPES 58 (75)
T ss_pred ccccHHHHHHHHHHHHHcCCEEEEECCCc
Confidence 35567788889999999999999999764
No 143
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=35.66 E-value=2.3e+02 Score=25.27 Aligned_cols=73 Identities=12% Similarity=0.176 Sum_probs=48.3
Q ss_pred CCCcEEEEEcCCCCCChhhHHHHhhhccCCCCCCcEEEEeCCC-hHHHHhh-CCCCceeCCCCCHHHHHHHHHHhh
Q 028606 53 SGKKFLLFLDDLWNVNYDLWSYLCRPLVESCAPGSKDIITARF-TDVATMV-ATTSTYPLECLSDEDCLRILAEQS 126 (206)
Q Consensus 53 ~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~~gs~IivTTr~-~~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~a 126 (206)
.+++-++|+|++...+...++.+...+. .......+|++|.. ..+...+ .....+...+++.++....+...+
T Consensus 117 ~~~~KVvIIDEa~~Ls~~a~naLLK~LE-epp~~~vfI~~tte~~kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~ 191 (563)
T PRK06647 117 SSRYRVYIIDEVHMLSNSAFNALLKTIE-EPPPYIVFIFATTEVHKLPATIKSRCQHFNFRLLSLEKIYNMLKKVC 191 (563)
T ss_pred cCCCEEEEEEChhhcCHHHHHHHHHhhc-cCCCCEEEEEecCChHHhHHHHHHhceEEEecCCCHHHHHHHHHHHH
Confidence 3566688999987546666777777776 44456666666543 3333322 224568899999988888887765
No 144
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=35.63 E-value=2e+02 Score=25.67 Aligned_cols=72 Identities=13% Similarity=0.157 Sum_probs=46.1
Q ss_pred CCcEEEEEcCCCCCChhhHHHHhhhccCCCCCCcEEEEeCCC-hHHHHhh-CCCCceeCCCCCHHHHHHHHHHhh
Q 028606 54 GKKFLLFLDDLWNVNYDLWSYLCRPLVESCAPGSKDIITARF-TDVATMV-ATTSTYPLECLSDEDCLRILAEQS 126 (206)
Q Consensus 54 ~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~~gs~IivTTr~-~~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~a 126 (206)
+++-++|+|++..-+....+.|...+. .....+.+|++|.+ ..+...+ .....+.+..++.++....+...+
T Consensus 119 ~~~kVvIIDEa~~L~~~a~naLLk~LE-epp~~tv~Il~t~~~~kll~tI~SR~~~i~f~~l~~~el~~~L~~~a 192 (585)
T PRK14950 119 ARYKVYIIDEVHMLSTAAFNALLKTLE-EPPPHAIFILATTEVHKVPATILSRCQRFDFHRHSVADMAAHLRKIA 192 (585)
T ss_pred CCeEEEEEeChHhCCHHHHHHHHHHHh-cCCCCeEEEEEeCChhhhhHHHHhccceeeCCCCCHHHHHHHHHHHH
Confidence 456689999986445556777777666 44456666666543 3333322 223567888898888877777665
No 145
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=35.20 E-value=1e+02 Score=23.66 Aligned_cols=55 Identities=9% Similarity=0.070 Sum_probs=32.9
Q ss_pred HHHHHcCCCcEEEEEcCCCCC-ChhhHHHHhhhccCCCCCCcEEEEeCCChHHHHh
Q 028606 47 KLKKQFSGKKFLLFLDDLWNV-NYDLWSYLCRPLVESCAPGSKDIITARFTDVATM 101 (206)
Q Consensus 47 ~l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~~~~gs~IivTTr~~~v~~~ 101 (206)
.+-..+..+.-+++||.--.. +...-+.+...+......|..||++|.+.+....
T Consensus 161 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~ 216 (252)
T CHL00131 161 EILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDY 216 (252)
T ss_pred HHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHh
Confidence 344556667788899986432 3444444444443112246778999998776654
No 146
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=35.16 E-value=2e+02 Score=26.99 Aligned_cols=47 Identities=17% Similarity=0.222 Sum_probs=30.4
Q ss_pred HHHHcCCC-cEEEEEcCCCCCChhhHHHHhhhccCCC-----------CCCcEEEEeCCC
Q 028606 48 LKKQFSGK-KFLLFLDDLWNVNYDLWSYLCRPLVESC-----------APGSKDIITARF 95 (206)
Q Consensus 48 l~~~L~~k-r~LlVLDdv~~~~~~~~~~l~~~l~~~~-----------~~gs~IivTTr~ 95 (206)
+.+.++.+ ..+|+||++...+...+..+...+. .+ -.++.||+||..
T Consensus 659 l~~~v~~~p~~vlllDeieka~~~v~~~Ll~~l~-~g~l~d~~g~~vd~rn~iiI~TSn~ 717 (852)
T TIGR03346 659 LTEAVRRKPYSVVLFDEVEKAHPDVFNVLLQVLD-DGRLTDGQGRTVDFRNTVIIMTSNL 717 (852)
T ss_pred HHHHHHcCCCcEEEEeccccCCHHHHHHHHHHHh-cCceecCCCeEEecCCcEEEEeCCc
Confidence 33444333 3589999997668888888877765 32 123447888775
No 147
>TIGR00310 ZPR1_znf ZPR1 zinc finger domain.
Probab=34.95 E-value=41 Score=25.26 Aligned_cols=47 Identities=21% Similarity=0.345 Sum_probs=31.0
Q ss_pred CHHHHHHHHHHHhhcCCCC----CC---CCHHHHHHHHHHHcCCC-cEEEEEcCCC
Q 028606 18 DALKVTKSILKSIATDQPV----DD---NDLNLLQGKLKKQFSGK-KFLLFLDDLW 65 (206)
Q Consensus 18 ~~~~i~~~i~~~l~~~~~~----~~---~~~~~~~~~l~~~L~~k-r~LlVLDdv~ 65 (206)
+++.++..+...+ ..... +. ...++..++|++...++ .|-|||||-.
T Consensus 97 TVEGlL~~~~~~L-~~~~~~d~~~~e~~~k~~~~i~kL~~~~~g~~pfTlIidDP~ 151 (192)
T TIGR00310 97 NLEGVLRRVEEEL-ETAIRWQSEDEETKKRAEEILERLKEAIEGKEKFTVILEDPL 151 (192)
T ss_pred eeHhHHHHHHHHH-HhhhhccccCHHHHHHHHHHHHHHHHHHhCCCCEEEEEECCC
Confidence 6788888888877 32211 11 12344566677777774 8999999986
No 148
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=34.22 E-value=1.5e+02 Score=26.35 Aligned_cols=72 Identities=11% Similarity=0.179 Sum_probs=45.0
Q ss_pred CCcEEEEEcCCCCCChhhHHHHhhhccCCCCCCcEEEEeC-CChHHHHhh-CCCCceeCCCCCHHHHHHHHHHhh
Q 028606 54 GKKFLLFLDDLWNVNYDLWSYLCRPLVESCAPGSKDIITA-RFTDVATMV-ATTSTYPLECLSDEDCLRILAEQS 126 (206)
Q Consensus 54 ~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~~gs~IivTT-r~~~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~a 126 (206)
+++-++|+|++...+....+.|...+. .-.....+|++| ....+...+ .....+.+++++.++....+...+
T Consensus 118 ~~~KVvIIdev~~Lt~~a~naLLk~LE-epp~~~~fIl~t~~~~kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~ 191 (576)
T PRK14965 118 SRYKIFIIDEVHMLSTNAFNALLKTLE-EPPPHVKFIFATTEPHKVPITILSRCQRFDFRRIPLQKIVDRLRYIA 191 (576)
T ss_pred CCceEEEEEChhhCCHHHHHHHHHHHH-cCCCCeEEEEEeCChhhhhHHHHHhhhhhhcCCCCHHHHHHHHHHHH
Confidence 445578899986445566777777776 444466666555 444444332 224567888888888776666544
No 149
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=33.94 E-value=1.6e+02 Score=22.19 Aligned_cols=54 Identities=15% Similarity=0.134 Sum_probs=33.4
Q ss_pred HHHHHcCCCcEEEEEcCCCCC-ChhhHHHHhhhccCCCCCCcEEEEeCCChHHHHh
Q 028606 47 KLKKQFSGKKFLLFLDDLWNV-NYDLWSYLCRPLVESCAPGSKDIITARFTDVATM 101 (206)
Q Consensus 47 ~l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~~~~gs~IivTTr~~~v~~~ 101 (206)
.+-..|..+.=+++||.-... +...-+.+...+. ....|..||++|.+......
T Consensus 149 ~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~-~~~~~~tii~~sh~~~~~~~ 203 (229)
T cd03254 149 AIARAMLRDPKILILDEATSNIDTETEKLIQEALE-KLMKGRTSIIIAHRLSTIKN 203 (229)
T ss_pred HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHH-HhcCCCEEEEEecCHHHHhh
Confidence 344556667778899976532 4444444544444 22246778888888777654
No 150
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=33.87 E-value=1.5e+02 Score=21.92 Aligned_cols=53 Identities=13% Similarity=0.082 Sum_probs=32.3
Q ss_pred HHHHcCCCcEEEEEcCCCCC-ChhhHHHHhhhccCCCCCCcEEEEeCCChHHHHh
Q 028606 48 LKKQFSGKKFLLFLDDLWNV-NYDLWSYLCRPLVESCAPGSKDIITARFTDVATM 101 (206)
Q Consensus 48 l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~~~~gs~IivTTr~~~v~~~ 101 (206)
+-+.+..+.=+++||+.... +....+.+...+. ....|..||++|.+.+.+..
T Consensus 136 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~-~~~~~~tiii~th~~~~~~~ 189 (207)
T cd03369 136 LARALLKRPRVLVLDEATASIDYATDALIQKTIR-EEFTNSTILTIAHRLRTIID 189 (207)
T ss_pred HHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHH-HhcCCCEEEEEeCCHHHHhh
Confidence 44444556667888986532 4445555555554 33347778888888776654
No 151
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=33.74 E-value=1.3e+02 Score=22.53 Aligned_cols=55 Identities=15% Similarity=0.032 Sum_probs=32.7
Q ss_pred HHHHcCCCcEEEEEcCCCCC-ChhhHHHHhhhccCCCCCCcEEEEeCCChHHHHhh
Q 028606 48 LKKQFSGKKFLLFLDDLWNV-NYDLWSYLCRPLVESCAPGSKDIITARFTDVATMV 102 (206)
Q Consensus 48 l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~~~~gs~IivTTr~~~v~~~~ 102 (206)
+-..+....-+++||+.-.. +...-+.+...+..-...|..||++|.+.+.+..+
T Consensus 135 laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~ 190 (223)
T TIGR03740 135 IAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQL 190 (223)
T ss_pred HHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHh
Confidence 44455566778899986432 44444444444431122467799999988866543
No 152
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=33.72 E-value=55 Score=27.46 Aligned_cols=40 Identities=20% Similarity=0.274 Sum_probs=27.2
Q ss_pred cCCC---cEEEEEcCCCCCChhhHHHHhhhccCCCCCCcEEEEeCCC
Q 028606 52 FSGK---KFLLFLDDLWNVNYDLWSYLCRPLVESCAPGSKDIITARF 95 (206)
Q Consensus 52 L~~k---r~LlVLDdv~~~~~~~~~~l~~~l~~~~~~gs~IivTTr~ 95 (206)
++|+ +-+|++|..++-...+.+. .+. ..+.||||+.|---
T Consensus 345 IRGRSl~~~FiIIDEaQNLTpheikT---ilt-R~G~GsKIVl~gd~ 387 (436)
T COG1875 345 IRGRSLPDSFIIIDEAQNLTPHELKT---ILT-RAGEGSKIVLTGDP 387 (436)
T ss_pred ecccccccceEEEehhhccCHHHHHH---HHH-hccCCCEEEEcCCH
Confidence 3555 4589999988544544444 444 56789999998753
No 153
>PRK06835 DNA replication protein DnaC; Validated
Probab=33.64 E-value=33 Score=28.09 Aligned_cols=39 Identities=26% Similarity=0.229 Sum_probs=21.2
Q ss_pred EEEEEcCCCCCChhhH--HHHhhhccCCCCCCcEEEEeCCC
Q 028606 57 FLLFLDDLWNVNYDLW--SYLCRPLVESCAPGSKDIITARF 95 (206)
Q Consensus 57 ~LlVLDdv~~~~~~~~--~~l~~~l~~~~~~gs~IivTTr~ 95 (206)
=||||||+-......| +.+...+...-..+..+|+||..
T Consensus 248 DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl 288 (329)
T PRK06835 248 DLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNL 288 (329)
T ss_pred CEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 4899999953322233 33433333112235568888874
No 154
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=33.62 E-value=1.4e+02 Score=21.27 Aligned_cols=54 Identities=17% Similarity=0.092 Sum_probs=31.7
Q ss_pred HHHHcCCCcEEEEEcCCCCC-ChhhHHHHhhhccCCCCCCcEEEEeCCChHHHHh
Q 028606 48 LKKQFSGKKFLLFLDDLWNV-NYDLWSYLCRPLVESCAPGSKDIITARFTDVATM 101 (206)
Q Consensus 48 l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~~~~gs~IivTTr~~~v~~~ 101 (206)
+-+.+..+.=+++||+.-.. +...-+.+...+......|..||++|.+...+..
T Consensus 93 laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~ 147 (163)
T cd03216 93 IARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFE 147 (163)
T ss_pred HHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 33445556677888986432 4444555555543112346778889988775443
No 155
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=33.62 E-value=1.3e+02 Score=25.28 Aligned_cols=41 Identities=17% Similarity=0.216 Sum_probs=28.0
Q ss_pred CCcEEEEEcCCCCCChhhHHHHhhhccCCCCCCcEEEEeCCCh
Q 028606 54 GKKFLLFLDDLWNVNYDLWSYLCRPLVESCAPGSKDIITARFT 96 (206)
Q Consensus 54 ~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~~gs~IivTTr~~ 96 (206)
+++++++||..| +...+..+...+....+.|-++++.+++.
T Consensus 269 ~~~~~~~lDE~~--~l~~~~~l~~~l~~~R~~G~~~~~~~Qs~ 309 (410)
T cd01127 269 ERRLWFFIDELP--SLHKLPDLVDALAEGRKFGGCFVLGIQSY 309 (410)
T ss_pred CCcEEEEEECcc--ccccchHHHHHHHHHhcCCCEEEEEEcCH
Confidence 568999999998 55545555444442346787888888763
No 156
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=33.50 E-value=1.4e+02 Score=21.65 Aligned_cols=54 Identities=15% Similarity=0.095 Sum_probs=32.1
Q ss_pred HHHHcCCCcEEEEEcCCCCC-ChhhHHHHhhhccCCCCCCcEEEEeCCChHHHHh
Q 028606 48 LKKQFSGKKFLLFLDDLWNV-NYDLWSYLCRPLVESCAPGSKDIITARFTDVATM 101 (206)
Q Consensus 48 l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~~~~gs~IivTTr~~~v~~~ 101 (206)
+-..+..+.=+++||+--.. +....+.+...+......|..||++|.+.+....
T Consensus 115 la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~ 169 (182)
T cd03215 115 LARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLG 169 (182)
T ss_pred HHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 44555667778899986432 4444444544443112247789999998765444
No 157
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=32.86 E-value=1.3e+02 Score=23.11 Aligned_cols=54 Identities=9% Similarity=0.027 Sum_probs=31.4
Q ss_pred HHHHcCCCcEEEEEcCCCCC-ChhhHHHHhhhccCCCCCCcEEEEeCCChHHHHhh
Q 028606 48 LKKQFSGKKFLLFLDDLWNV-NYDLWSYLCRPLVESCAPGSKDIITARFTDVATMV 102 (206)
Q Consensus 48 l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~~~~gs~IivTTr~~~v~~~~ 102 (206)
+-..|..+.=+++||+.-.. +......+...+. ....|..||++|.+.......
T Consensus 157 laral~~~p~llllDEP~~gLD~~~~~~l~~~l~-~~~~~~tiii~sh~~~~~~~~ 211 (250)
T PRK14266 157 IARTIAVSPEVILMDEPCSALDPISTTKIEDLIH-KLKEDYTIVIVTHNMQQATRV 211 (250)
T ss_pred HHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHH-HHhcCCeEEEEECCHHHHHhh
Confidence 44455566678999987532 4444445555444 222356777777776654443
No 158
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=32.82 E-value=1.4e+02 Score=23.30 Aligned_cols=39 Identities=21% Similarity=0.106 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCCChhhHHHHhhhccCCCCCCcEEEEeCCC
Q 028606 56 KFLLFLDDLWNVNYDLWSYLCRPLVESCAPGSKDIITARF 95 (206)
Q Consensus 56 r~LlVLDdv~~~~~~~~~~l~~~l~~~~~~gs~IivTTr~ 95 (206)
++|||+||+... ...=+.+...+......+.-+|+.++.
T Consensus 99 ~~LiIlDD~~~~-~~k~~~l~~~~~~gRH~~is~i~l~Q~ 137 (241)
T PF04665_consen 99 RFLIILDDLGDK-KLKSKILRQFFNNGRHYNISIIFLSQS 137 (241)
T ss_pred CeEEEEeCCCCc-hhhhHHHHHHHhcccccceEEEEEeee
Confidence 899999999721 111112333333123335556666653
No 159
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=32.54 E-value=1.3e+02 Score=22.97 Aligned_cols=55 Identities=11% Similarity=0.129 Sum_probs=32.4
Q ss_pred HHHHcCCCcEEEEEcCCCCC-ChhhHHHHhhhccCCCCCCcEEEEeCCChHHHHhh
Q 028606 48 LKKQFSGKKFLLFLDDLWNV-NYDLWSYLCRPLVESCAPGSKDIITARFTDVATMV 102 (206)
Q Consensus 48 l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~~~~gs~IivTTr~~~v~~~~ 102 (206)
+-..|..+.=+++||.--.. +...-+.+...+..-...|..||++|.+.+.+...
T Consensus 155 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~ 210 (243)
T TIGR01978 155 ILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYI 210 (243)
T ss_pred HHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhh
Confidence 44445556678899976432 34444444444431122467799999988877654
No 160
>PRK08939 primosomal protein DnaI; Reviewed
Probab=32.23 E-value=36 Score=27.52 Aligned_cols=39 Identities=15% Similarity=0.182 Sum_probs=23.9
Q ss_pred CcEEEEEcCCCCCChhhHHH--Hhhhc-cCCC-CCCcEEEEeCC
Q 028606 55 KKFLLFLDDLWNVNYDLWSY--LCRPL-VESC-APGSKDIITAR 94 (206)
Q Consensus 55 kr~LlVLDdv~~~~~~~~~~--l~~~l-~~~~-~~gs~IivTTr 94 (206)
+-=||||||+-.+....|.. +...+ . .. ..+-.+|+||.
T Consensus 217 ~~dlLiIDDiG~e~~s~~~~~~ll~~Il~-~R~~~~~~ti~TSN 259 (306)
T PRK08939 217 EAPVLMLDDIGAEQMSSWVRDEVLGVILQ-YRMQEELPTFFTSN 259 (306)
T ss_pred CCCEEEEecCCCccccHHHHHHHHHHHHH-HHHHCCCeEEEECC
Confidence 34589999997555666753 44433 3 22 24556888886
No 161
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=31.41 E-value=1.9e+02 Score=21.77 Aligned_cols=60 Identities=10% Similarity=0.088 Sum_probs=33.9
Q ss_pred HHHHcCCCcEEEEEcCCCCC-ChhhHHHHhhhccCCCCCCcEEEEeCCChHHHHhhCCCCceeC
Q 028606 48 LKKQFSGKKFLLFLDDLWNV-NYDLWSYLCRPLVESCAPGSKDIITARFTDVATMVATTSTYPL 110 (206)
Q Consensus 48 l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~~~~gs~IivTTr~~~v~~~~~~~~~~~l 110 (206)
+-..+..+.=+++||.-... +...-+.+...+. ....+..||++|.+.+.... .++++.+
T Consensus 161 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~-~~~~~~tii~~sh~~~~~~~--~d~i~~l 221 (226)
T cd03248 161 IARALIRNPQVLILDEATSALDAESEQQVQQALY-DWPERRTVLVIAHRLSTVER--ADQILVL 221 (226)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHH-HHcCCCEEEEEECCHHHHHh--CCEEEEe
Confidence 44455566778889976432 3444444444443 22224578888888776643 3455444
No 162
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=31.23 E-value=1.8e+02 Score=21.78 Aligned_cols=52 Identities=15% Similarity=0.102 Sum_probs=29.9
Q ss_pred HHHHcCCCcEEEEEcCCCCC-ChhhHHHHhhhccCCCCCCcEEEEeCCChHHHH
Q 028606 48 LKKQFSGKKFLLFLDDLWNV-NYDLWSYLCRPLVESCAPGSKDIITARFTDVAT 100 (206)
Q Consensus 48 l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~~~~gs~IivTTr~~~v~~ 100 (206)
+-..+..+.=+++||.--.. +...-+.+...+. ....+..||++|.+.+...
T Consensus 151 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~-~~~~~~tii~~sH~~~~~~ 203 (220)
T cd03245 151 LARALLNDPPILLLDEPTSAMDMNSEERLKERLR-QLLGDKTLIIITHRPSLLD 203 (220)
T ss_pred HHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHH-HhcCCCEEEEEeCCHHHHH
Confidence 33445556668888976432 3444444444444 2222367889998887654
No 163
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=31.08 E-value=1.6e+02 Score=21.13 Aligned_cols=56 Identities=16% Similarity=0.121 Sum_probs=33.1
Q ss_pred HHHHHcCCCcEEEEEcCCCCC-ChhhHHHHhhhccCCCCCCcEEEEeCCChHHHHhh
Q 028606 47 KLKKQFSGKKFLLFLDDLWNV-NYDLWSYLCRPLVESCAPGSKDIITARFTDVATMV 102 (206)
Q Consensus 47 ~l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~~~~gs~IivTTr~~~v~~~~ 102 (206)
.+-..+..+.=+++||+.-.. +...-+.+...+..-...|..||++|.+.+....+
T Consensus 105 ~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~ 161 (173)
T cd03230 105 ALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERL 161 (173)
T ss_pred HHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHh
Confidence 345556667778899986432 34444444444431112367899999988766543
No 164
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=31.04 E-value=1.5e+02 Score=21.27 Aligned_cols=53 Identities=19% Similarity=0.219 Sum_probs=30.3
Q ss_pred HHHHcCCCcEEEEEcCCCCC-ChhhHHHHhhhccCCCCCCcEEEEeCCChHHHH
Q 028606 48 LKKQFSGKKFLLFLDDLWNV-NYDLWSYLCRPLVESCAPGSKDIITARFTDVAT 100 (206)
Q Consensus 48 l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~~~~gs~IivTTr~~~v~~ 100 (206)
+-..+..+.=+++||+.-.. +...-..+...+......|..||++|.+.+...
T Consensus 107 la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~ 160 (173)
T cd03246 107 LARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLA 160 (173)
T ss_pred HHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 33445555567888986432 343444444444311224778899998887664
No 165
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=31.00 E-value=2.6e+02 Score=25.25 Aligned_cols=72 Identities=11% Similarity=0.152 Sum_probs=45.0
Q ss_pred CCcEEEEEcCCCCCChhhHHHHhhhccCCCCCCcEEEEeCCC-hHHHHhh-CCCCceeCCCCCHHHHHHHHHHhh
Q 028606 54 GKKFLLFLDDLWNVNYDLWSYLCRPLVESCAPGSKDIITARF-TDVATMV-ATTSTYPLECLSDEDCLRILAEQS 126 (206)
Q Consensus 54 ~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~~gs~IivTTr~-~~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~a 126 (206)
+++-++|+|++...+...++.|...+. .-.....+|++|.+ ..+...+ .....+.+..++.++....+.+.+
T Consensus 120 ~~~KViIIDEad~Lt~~a~naLLK~LE-ePp~~tvfIL~t~~~~~llpTIrSRc~~~~f~~l~~~ei~~~L~~ia 193 (620)
T PRK14948 120 ARWKVYVIDECHMLSTAAFNALLKTLE-EPPPRVVFVLATTDPQRVLPTIISRCQRFDFRRIPLEAMVQHLSEIA 193 (620)
T ss_pred CCceEEEEECccccCHHHHHHHHHHHh-cCCcCeEEEEEeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHH
Confidence 455688999987556666777777776 44445555555544 3333332 223567788888887776666544
No 166
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=30.84 E-value=1.7e+02 Score=22.55 Aligned_cols=54 Identities=6% Similarity=-0.032 Sum_probs=32.5
Q ss_pred HHHHcCCCcEEEEEcCCCCC-ChhhHHHHhhhccCCCCCCcEEEEeCCChHHHHhh
Q 028606 48 LKKQFSGKKFLLFLDDLWNV-NYDLWSYLCRPLVESCAPGSKDIITARFTDVATMV 102 (206)
Q Consensus 48 l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~~~~gs~IivTTr~~~v~~~~ 102 (206)
+-+.+..+.=+++||.--.. +...-+.+...+. ....|..||++|.+.+....+
T Consensus 158 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~-~~~~~~tilivsh~~~~~~~~ 212 (251)
T PRK14249 158 IARVLAIEPEVILMDEPCSALDPVSTMRIEELMQ-ELKQNYTIAIVTHNMQQAARA 212 (251)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHH-HHhcCCEEEEEeCCHHHHHhh
Confidence 44455666778889976422 4444444444444 222467788888887766554
No 167
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=30.80 E-value=1.3e+02 Score=23.05 Aligned_cols=56 Identities=11% Similarity=0.042 Sum_probs=31.2
Q ss_pred HHHHHcCCCcEEEEEcCCCCC-ChhhHHHHhhhccCCCCCCcEEEEeCCChHHHHhh
Q 028606 47 KLKKQFSGKKFLLFLDDLWNV-NYDLWSYLCRPLVESCAPGSKDIITARFTDVATMV 102 (206)
Q Consensus 47 ~l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~~~~gs~IivTTr~~~v~~~~ 102 (206)
.+-+.+..+.=+++||..-.. +...-+.+...+..-...|..||++|.+...+...
T Consensus 155 ~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~ 211 (248)
T PRK09580 155 DILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYI 211 (248)
T ss_pred HHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhh
Confidence 344455566677888976432 23333333333220112467899999987776653
No 168
>PF08121 Toxin_33: Waglerin family; InterPro: IPR012637 This family consists of the lethal peptides (waglerins) that are found in the venom of Trimeresurus wagleri (Wagler's pit viper) (Tropidolaemus wagleri). Waglerins are 22-24 residue lethal peptides and are competitive antagonist of the muscle nicotinic receptor (nAChR). Waglerin-1 possesses a distinctive selectivity for the alpha-epsilon interface binding site of the mouse nAChR [].; GO: 0030550 acetylcholine receptor inhibitor activity, 0005576 extracellular region
Probab=30.47 E-value=6.8 Score=17.52 Aligned_cols=14 Identities=36% Similarity=0.368 Sum_probs=11.6
Q ss_pred HHHHHhHhhhhhhc
Q 028606 187 LFNFYFYFHYVCRL 200 (206)
Q Consensus 187 lk~CflY~~~~~r~ 200 (206)
+|.|+-=|++.||-
T Consensus 6 lrpcyppchyiprp 19 (22)
T PF08121_consen 6 LRPCYPPCHYIPRP 19 (22)
T ss_pred cccCCCCccccCCC
Confidence 88898888888873
No 169
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=30.24 E-value=3.9e+02 Score=23.69 Aligned_cols=72 Identities=10% Similarity=0.142 Sum_probs=48.6
Q ss_pred CCcEEEEEcCCCCCChhhHHHHhhhccCCCCCCcEEEEeCCChH-HHHh-hCCCCceeCCCCCHHHHHHHHHHhh
Q 028606 54 GKKFLLFLDDLWNVNYDLWSYLCRPLVESCAPGSKDIITARFTD-VATM-VATTSTYPLECLSDEDCLRILAEQS 126 (206)
Q Consensus 54 ~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~~gs~IivTTr~~~-v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~a 126 (206)
+++-++|+|++...+....+.+...+. .....+++|++|.+.. +... ......+++.+++.++....+...+
T Consensus 116 ~~~KVvIIDEad~Lt~~A~NALLK~LE-Epp~~t~FIL~ttd~~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il 189 (535)
T PRK08451 116 ARFKIFIIDEVHMLTKEAFNALLKTLE-EPPSYVKFILATTDPLKLPATILSRTQHFRFKQIPQNSIISHLKTIL 189 (535)
T ss_pred CCeEEEEEECcccCCHHHHHHHHHHHh-hcCCceEEEEEECChhhCchHHHhhceeEEcCCCCHHHHHHHHHHHH
Confidence 455688999997656666777777776 4455677777766532 2221 1224578999999998888777655
No 170
>PF04835 Pox_A9: A9 protein conserved region; InterPro: IPR006920 This entry represents a family of Chordopoxvirus A9 proteins. Chordopoxvirus belongs to the family Poxviridae and is the cause of vertebrate infections [].
Probab=30.22 E-value=34 Score=19.79 Aligned_cols=9 Identities=22% Similarity=0.718 Sum_probs=7.7
Q ss_pred HHHHHhHhh
Q 028606 187 LFNFYFYFH 195 (206)
Q Consensus 187 lk~CflY~~ 195 (206)
.|+||.|+.
T Consensus 5 ~rH~~myfc 13 (54)
T PF04835_consen 5 FRHCFMYFC 13 (54)
T ss_pred HHHHHHHHH
Confidence 689999984
No 171
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=30.18 E-value=1.7e+02 Score=21.68 Aligned_cols=55 Identities=20% Similarity=0.152 Sum_probs=32.4
Q ss_pred HHHHcCCCcEEEEEcCCCCC-ChhhHHHHhhhccCCCCCCcEEEEeCCChHHHHhh
Q 028606 48 LKKQFSGKKFLLFLDDLWNV-NYDLWSYLCRPLVESCAPGSKDIITARFTDVATMV 102 (206)
Q Consensus 48 l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~~~~gs~IivTTr~~~v~~~~ 102 (206)
+-..+..+.=+++||.--.. +...-+.+...+......|..||++|.+...+...
T Consensus 137 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~ 192 (208)
T cd03268 137 IALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKV 192 (208)
T ss_pred HHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHh
Confidence 44445556668899986432 34444444444431122467899999988866543
No 172
>PRK12377 putative replication protein; Provisional
Probab=30.16 E-value=48 Score=25.95 Aligned_cols=41 Identities=17% Similarity=-0.009 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCCCChhhHH--HHhhhccCCCCCCcEEEEeCCC
Q 028606 55 KKFLLFLDDLWNVNYDLWS--YLCRPLVESCAPGSKDIITARF 95 (206)
Q Consensus 55 kr~LlVLDdv~~~~~~~~~--~l~~~l~~~~~~gs~IivTTr~ 95 (206)
+-=||||||+-......|. .+...+...-.++--+|+||..
T Consensus 163 ~~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl 205 (248)
T PRK12377 163 KVDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNL 205 (248)
T ss_pred CCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 3458999999432333443 3334443112223347788763
No 173
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=29.62 E-value=2e+02 Score=21.52 Aligned_cols=54 Identities=19% Similarity=0.163 Sum_probs=32.5
Q ss_pred HHHHcCCCcEEEEEcCCCCC-ChhhHHHHhhhccCCCCCCcEEEEeCCChHHHHhh
Q 028606 48 LKKQFSGKKFLLFLDDLWNV-NYDLWSYLCRPLVESCAPGSKDIITARFTDVATMV 102 (206)
Q Consensus 48 l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~~~~gs~IivTTr~~~v~~~~ 102 (206)
+-..+..+.=+++||..-.. +...-+.+...+. ....+..||++|.+.+.+..+
T Consensus 144 la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~-~~~~~~tii~~sH~~~~~~~~ 198 (220)
T cd03263 144 LAIALIGGPSVLLLDEPTSGLDPASRRAIWDLIL-EVRKGRSIILTTHSMDEAEAL 198 (220)
T ss_pred HHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHH-HHhcCCEEEEEcCCHHHHHHh
Confidence 44455667778899986532 4444444444443 222346789999888766543
No 174
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=28.87 E-value=1e+02 Score=23.05 Aligned_cols=61 Identities=15% Similarity=0.138 Sum_probs=35.3
Q ss_pred HHHHcCCCcEEEEEcCCCCC-ChhhHH-HHhhhccCCCCC-CcEEEEeCCChHHHHhhCCCCceeC
Q 028606 48 LKKQFSGKKFLLFLDDLWNV-NYDLWS-YLCRPLVESCAP-GSKDIITARFTDVATMVATTSTYPL 110 (206)
Q Consensus 48 l~~~L~~kr~LlVLDdv~~~-~~~~~~-~l~~~l~~~~~~-gs~IivTTr~~~v~~~~~~~~~~~l 110 (206)
+-..+..+.-++++|+.-.. +....+ .+...+...... |..||++|.+.+.... .+.++.+
T Consensus 132 la~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~--~d~i~~l 195 (204)
T cd03240 132 LAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDA--ADHIYRV 195 (204)
T ss_pred HHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhh--CCEEEEE
Confidence 44556677788999987532 343444 444444311122 6678899988876653 3344443
No 175
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=28.76 E-value=1.9e+02 Score=22.16 Aligned_cols=53 Identities=8% Similarity=0.056 Sum_probs=31.6
Q ss_pred HHHHcCCCcEEEEEcCCCCC-ChhhHHHHhhhccCCCCCCcEEEEeCCChHHHHh
Q 028606 48 LKKQFSGKKFLLFLDDLWNV-NYDLWSYLCRPLVESCAPGSKDIITARFTDVATM 101 (206)
Q Consensus 48 l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~~~~gs~IivTTr~~~v~~~ 101 (206)
+-..|..+.=+++||..-.. +...-+.+...+. ....|..||++|.+.+....
T Consensus 157 laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~-~~~~~~tiii~sH~~~~~~~ 210 (250)
T PRK14247 157 IARALAFQPEVLLADEPTANLDPENTAKIESLFL-ELKKDMTIVLVTHFPQQAAR 210 (250)
T ss_pred HHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHH-HHhcCCEEEEEeCCHHHHHH
Confidence 34445566778899986432 3444444444444 22236778889888776544
No 176
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=28.59 E-value=1.1e+02 Score=23.02 Aligned_cols=46 Identities=9% Similarity=0.111 Sum_probs=26.8
Q ss_pred cEEEEEcCCCCC-ChhhHHHHhhhccCCCCCCcEEEEeCCChHHHHhh
Q 028606 56 KFLLFLDDLWNV-NYDLWSYLCRPLVESCAPGSKDIITARFTDVATMV 102 (206)
Q Consensus 56 r~LlVLDdv~~~-~~~~~~~l~~~l~~~~~~gs~IivTTr~~~v~~~~ 102 (206)
.=++++|..-.. +....+.+...+. ....+..+|++|...++...+
T Consensus 150 p~ililDEPt~gLD~~~~~~l~~~l~-~~~~~~~~iivs~~~~~~~~~ 196 (212)
T cd03274 150 TPLYVMDEIDAALDFRNVSIVANYIK-ERTKNAQFIVISLRNNMFELA 196 (212)
T ss_pred CCEEEEcCCCcCCCHHHHHHHHHHHH-HHcCCCEEEEEECcHHHHHhC
Confidence 357789986533 4555555555555 333455666666666666543
No 177
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=28.49 E-value=3.3e+02 Score=24.22 Aligned_cols=73 Identities=12% Similarity=0.146 Sum_probs=45.5
Q ss_pred CCCcEEEEEcCCCCCChhhHHHHhhhccCCCCCCcEEEEeC-CChHHHHhh-CCCCceeCCCCCHHHHHHHHHHhh
Q 028606 53 SGKKFLLFLDDLWNVNYDLWSYLCRPLVESCAPGSKDIITA-RFTDVATMV-ATTSTYPLECLSDEDCLRILAEQS 126 (206)
Q Consensus 53 ~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~~gs~IivTT-r~~~v~~~~-~~~~~~~l~~L~~~~~~~Lf~~~a 126 (206)
.+++-++|+|++..-+...+..|...+. .......+|++| ....+...+ .....+.+.+++.++....+...+
T Consensus 117 ~~~~kViIIDE~~~Lt~~a~naLLKtLE-epp~~~ifIlatt~~~ki~~tI~SRc~~~~f~~~~~~ei~~~L~~i~ 191 (559)
T PRK05563 117 EAKYKVYIIDEVHMLSTGAFNALLKTLE-EPPAHVIFILATTEPHKIPATILSRCQRFDFKRISVEDIVERLKYIL 191 (559)
T ss_pred cCCeEEEEEECcccCCHHHHHHHHHHhc-CCCCCeEEEEEeCChhhCcHHHHhHheEEecCCCCHHHHHHHHHHHH
Confidence 3456678899986445666777777766 433455555444 433333322 223567888898888877777655
No 178
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=28.01 E-value=1.9e+02 Score=22.03 Aligned_cols=54 Identities=13% Similarity=0.022 Sum_probs=30.9
Q ss_pred HHHHcCCCcEEEEEcCCCCC-ChhhHHHHhhhccCCCCCCcEEEEeCCChHHHHhh
Q 028606 48 LKKQFSGKKFLLFLDDLWNV-NYDLWSYLCRPLVESCAPGSKDIITARFTDVATMV 102 (206)
Q Consensus 48 l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~~~~gs~IivTTr~~~v~~~~ 102 (206)
+-..+..+.=+++||+.-.. +...-+.+...+. ....+..||++|.+.+.+..+
T Consensus 154 laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~-~~~~~~tii~~sH~~~~~~~~ 208 (242)
T TIGR03411 154 IGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLK-SLAGKHSVVVVEHDMEFVRSI 208 (242)
T ss_pred HHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHH-HHhcCCEEEEEECCHHHHHHh
Confidence 44445556668899986432 3444444444443 212256788888887766543
No 179
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=27.72 E-value=1.2e+02 Score=22.58 Aligned_cols=47 Identities=11% Similarity=0.024 Sum_probs=27.2
Q ss_pred CCcEEEEEcCCCCC-ChhhHHHHhhhccCCCCCCcEEEEeCCChHHHHh
Q 028606 54 GKKFLLFLDDLWNV-NYDLWSYLCRPLVESCAPGSKDIITARFTDVATM 101 (206)
Q Consensus 54 ~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~~~~gs~IivTTr~~~v~~~ 101 (206)
...-+++||..... +...-+.+...+. ....+..||++|.+.+....
T Consensus 134 ~~~~illlDEP~~~LD~~~~~~l~~~l~-~~~~~~tiIiitH~~~~~~~ 181 (197)
T cd03278 134 RPSPFCVLDEVDAALDDANVERFARLLK-EFSKETQFIVITHRKGTMEA 181 (197)
T ss_pred CCCCEEEEeCCcccCCHHHHHHHHHHHH-HhccCCEEEEEECCHHHHhh
Confidence 34457778876532 3333344444444 22235679999998887653
No 180
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=27.52 E-value=2e+02 Score=22.35 Aligned_cols=54 Identities=9% Similarity=0.058 Sum_probs=32.3
Q ss_pred HHHHcCCCcEEEEEcCCCCC-ChhhHHHHhhhccCCCCCCcEEEEeCCChHHHHhh
Q 028606 48 LKKQFSGKKFLLFLDDLWNV-NYDLWSYLCRPLVESCAPGSKDIITARFTDVATMV 102 (206)
Q Consensus 48 l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~~~~gs~IivTTr~~~v~~~~ 102 (206)
+-+.+..+.=+++||+--.. +....+.+...+. ....+..||++|.+...+..+
T Consensus 164 laral~~~P~llllDEPt~~LD~~~~~~l~~~l~-~~~~~~tiilvsh~~~~~~~~ 218 (257)
T PRK14246 164 IARALALKPKVLLMDEPTSMIDIVNSQAIEKLIT-ELKNEIAIVIVSHNPQQVARV 218 (257)
T ss_pred HHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHH-HHhcCcEEEEEECCHHHHHHh
Confidence 44445556677888976422 3444445555544 222357899999988876543
No 181
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=27.39 E-value=1.8e+02 Score=22.23 Aligned_cols=54 Identities=6% Similarity=-0.002 Sum_probs=30.8
Q ss_pred HHHHcCCCcEEEEEcCCCCC-ChhhHHHHhhhccCCCCCCcEEEEeCCChHHHHhh
Q 028606 48 LKKQFSGKKFLLFLDDLWNV-NYDLWSYLCRPLVESCAPGSKDIITARFTDVATMV 102 (206)
Q Consensus 48 l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~~~~gs~IivTTr~~~v~~~~ 102 (206)
+-..+..+.=+++||+--.. +......+...+. ....+..||++|++.+....+
T Consensus 156 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~-~~~~~~tii~~sh~~~~~~~~ 210 (249)
T PRK14253 156 IARTIAMEPDVILMDEPTSALDPIATHKIEELME-ELKKNYTIVIVTHSMQQARRI 210 (249)
T ss_pred HHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHH-HHhcCCeEEEEecCHHHHHHh
Confidence 44445556678999986432 3444444444443 222346788888877765543
No 182
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=27.34 E-value=1.7e+02 Score=21.54 Aligned_cols=54 Identities=19% Similarity=0.124 Sum_probs=32.5
Q ss_pred HHHHHcCCCcEEEEEcCCCCC-ChhhHHHHhhhccCCCCCCcEEEEeCCChHHHH
Q 028606 47 KLKKQFSGKKFLLFLDDLWNV-NYDLWSYLCRPLVESCAPGSKDIITARFTDVAT 100 (206)
Q Consensus 47 ~l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~~~~gs~IivTTr~~~v~~ 100 (206)
.+-..|..+.=+++||+--.. +...-+.+...+......|..||++|++.....
T Consensus 144 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~ 198 (206)
T TIGR03608 144 ALARAILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVAK 198 (206)
T ss_pred HHHHHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHh
Confidence 345556667778899986432 344444444444311224778899998877654
No 183
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=27.34 E-value=1.8e+02 Score=21.59 Aligned_cols=55 Identities=18% Similarity=0.044 Sum_probs=31.1
Q ss_pred HHHHcCCCcEEEEEcCCCCC-ChhhHHHHhhhccCCCCCCcEEEEeCCChHHHHhh
Q 028606 48 LKKQFSGKKFLLFLDDLWNV-NYDLWSYLCRPLVESCAPGSKDIITARFTDVATMV 102 (206)
Q Consensus 48 l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~~~~gs~IivTTr~~~v~~~~ 102 (206)
+-..|..+.=+++||.--.. +...-+.+...+......|..||++|.+.+.+..+
T Consensus 145 laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~ 200 (211)
T cd03225 145 IAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLEL 200 (211)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHh
Confidence 34445556668899976432 33333444444331112377899999987766553
No 184
>PF03367 zf-ZPR1: ZPR1 zinc-finger domain; InterPro: IPR004457 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents ZPR1-type zinc finger domains. An orthologous protein found once in each of the completed archaeal genomes corresponds to a zinc finger-containing domain repeated as the N-terminal and C-terminal halves of the mouse protein ZPR1. ZPR1 is an experimentally proven zinc-binding protein that binds the tyrosine kinase domain of the epidermal growth factor receptor (EGFR); binding is inhibited by EGF stimulation and tyrosine phosphorylation, and activation by EGF is followed by some redistribution of ZPR1 to the nucleus. By analogy, other proteins with the ZPR1 zinc finger domain may be regulatory proteins that sense protein phosphorylation state and/or participate in signal transduction (see also IPR004470 from INTERPRO). Deficiencies in ZPR1 may contribute to neurodegenerative disorders. ZPR1 appears to be down-regulated in patients with spinal muscular atrophy (SMA), a disease characterised by degeneration of the alpha-motor neurons in the spinal cord that can arise from mutations affecting the expression of Survival Motor Neurons (SMN) []. ZPR1 interacts with complexes formed by SMN [], and may act as a modifier that effects the severity of SMA. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2QKD_A.
Probab=27.29 E-value=34 Score=24.87 Aligned_cols=47 Identities=21% Similarity=0.313 Sum_probs=30.8
Q ss_pred CHHHHHHHHHHHhhcCCCC--CC------CCHHHHHHHHHHHcCCC-cEEEEEcCCC
Q 028606 18 DALKVTKSILKSIATDQPV--DD------NDLNLLQGKLKKQFSGK-KFLLFLDDLW 65 (206)
Q Consensus 18 ~~~~i~~~i~~~l~~~~~~--~~------~~~~~~~~~l~~~L~~k-r~LlVLDdv~ 65 (206)
+++.++..+...+ ..... +. ...++..+++.+...++ .|-|||||-.
T Consensus 99 TVEGlL~~i~~~L-~~~~~~~~~~~~e~~~~~~~~i~~L~~~~~g~~pfTlIidDP~ 154 (161)
T PF03367_consen 99 TVEGLLMRIIDNL-ERLQPERDSDDPEEKEKIEEFIEKLDELIEGKRPFTLIIDDPS 154 (161)
T ss_dssp EHHHHHHHHHHHH-HTTHHCCCHH-HHHHHHHHHHHHHHHHHHCTSS-EEEEEEETT
T ss_pred ehHHHHHHHHHHH-HhhhhccccCCHHHHHHHHHHHHHHHHHHcCCCCEEEEEECCC
Confidence 6889999999888 33221 11 12334566777777765 8999999975
No 185
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=27.25 E-value=2e+02 Score=21.78 Aligned_cols=56 Identities=14% Similarity=0.109 Sum_probs=31.3
Q ss_pred HHHHHcCCCcEEEEEcCCCCC-ChhhHHHHhhhccCCCCCCcEEEEeCCChHHHHhh
Q 028606 47 KLKKQFSGKKFLLFLDDLWNV-NYDLWSYLCRPLVESCAPGSKDIITARFTDVATMV 102 (206)
Q Consensus 47 ~l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~~~~gs~IivTTr~~~v~~~~ 102 (206)
.+-..+..+.=+++||+--.. +...-..+...+......|..||++|++.+.+..+
T Consensus 152 ~laral~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~~~~~ 208 (224)
T cd03220 152 AFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRL 208 (224)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHh
Confidence 355556667788999986532 22222223223221112366799999987766543
No 186
>COG2236 Predicted phosphoribosyltransferases [General function prediction only]
Probab=27.20 E-value=41 Score=25.27 Aligned_cols=23 Identities=30% Similarity=0.446 Sum_probs=14.0
Q ss_pred cCCCcEEEEEcCCCCCChhhHHHHh
Q 028606 52 FSGKKFLLFLDDLWNVNYDLWSYLC 76 (206)
Q Consensus 52 L~~kr~LlVLDdv~~~~~~~~~~l~ 76 (206)
+.|||+||| |||.+ +-..++...
T Consensus 85 l~GkkVLIV-DDI~D-TG~Tl~~a~ 107 (192)
T COG2236 85 LSGKKVLIV-DDIVD-TGETLELAL 107 (192)
T ss_pred cCCCeEEEE-ecccC-chHhHHHHH
Confidence 788998776 77762 333344333
No 187
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=27.18 E-value=2.6e+02 Score=22.33 Aligned_cols=54 Identities=9% Similarity=0.082 Sum_probs=32.4
Q ss_pred HHHHcCCCcEEEEEcCCCCC-ChhhHHHHhhhccCCCCCCcEEEEeCCChHHHHhh
Q 028606 48 LKKQFSGKKFLLFLDDLWNV-NYDLWSYLCRPLVESCAPGSKDIITARFTDVATMV 102 (206)
Q Consensus 48 l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~~~~gs~IivTTr~~~v~~~~ 102 (206)
+-..|.++.=+++||.--.. +...-+.+...+. .-..+..||+||.+.+.+..+
T Consensus 144 la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~-~~~~~~tiii~sH~l~~~~~~ 198 (301)
T TIGR03522 144 LAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIK-NIGKDKTIILSTHIMQEVEAI 198 (301)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHH-HhcCCCEEEEEcCCHHHHHHh
Confidence 45556677778899976432 3333344444443 222357799999988755443
No 188
>PRK12608 transcription termination factor Rho; Provisional
Probab=27.09 E-value=3.3e+02 Score=22.99 Aligned_cols=57 Identities=16% Similarity=0.232 Sum_probs=33.6
Q ss_pred eEEEEeCCCC-CHHHHHHHHHHHhhcCCCCCCCCHH------HHHHHHHHHc-CCCcEEEEEcCCC
Q 028606 8 QASTYVGGDF-DALKVTKSILKSIATDQPVDDNDLN------LLQGKLKKQF-SGKKFLLFLDDLW 65 (206)
Q Consensus 8 ~~wv~vs~~~-~~~~i~~~i~~~l~~~~~~~~~~~~------~~~~~l~~~L-~~kr~LlVLDdv~ 65 (206)
.+|+.+.+.. .+.++.+.+...+ .....+..... .+.+....+- .+++.+||+|++-
T Consensus 166 ~vv~lIgER~~EV~df~~~i~~~V-vast~de~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDslt 230 (380)
T PRK12608 166 LMVLLIDERPEEVTDMRRSVKGEV-YASTFDRPPDEHIRVAELVLERAKRLVEQGKDVVILLDSLT 230 (380)
T ss_pred EEEEEecCCCCCHHHHHHHHhhhE-EeecCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCcH
Confidence 3677777754 7888888888877 43222221111 1112222221 5889999999974
No 189
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=27.07 E-value=1.5e+02 Score=22.11 Aligned_cols=56 Identities=16% Similarity=0.179 Sum_probs=31.1
Q ss_pred HHHHcCCCcEEEEEcCCCCC-ChhhHHHHhhhccCCCCCCcEEEEeCCChHHHHhhC
Q 028606 48 LKKQFSGKKFLLFLDDLWNV-NYDLWSYLCRPLVESCAPGSKDIITARFTDVATMVA 103 (206)
Q Consensus 48 l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~~~~gs~IivTTr~~~v~~~~~ 103 (206)
+-+.+..+.=+++||..-.. +...-+.+...+......|..||++|++...+..+.
T Consensus 148 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~ 204 (214)
T PRK13543 148 LARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVR 204 (214)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhc
Confidence 34444555567888976432 344444444333211224667999998887665543
No 190
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=27.07 E-value=2e+02 Score=21.99 Aligned_cols=53 Identities=9% Similarity=0.042 Sum_probs=30.7
Q ss_pred HHHHcCCCcEEEEEcCCCCC-ChhhHHHHhhhccCCCCCCcEEEEeCCChHHHHh
Q 028606 48 LKKQFSGKKFLLFLDDLWNV-NYDLWSYLCRPLVESCAPGSKDIITARFTDVATM 101 (206)
Q Consensus 48 l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~~~~gs~IivTTr~~~v~~~ 101 (206)
+-..+..+.=+++||..-.. +...-+.+...+. ....+..||++|.+.+....
T Consensus 159 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~-~~~~~~tiii~sH~~~~~~~ 212 (252)
T PRK14272 159 IARALAVEPEILLMDEPTSALDPASTARIEDLMT-DLKKVTTIIIVTHNMHQAAR 212 (252)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHH-HHhcCCeEEEEeCCHHHHHH
Confidence 33445556668899986532 3444444444444 22235678888888775554
No 191
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=26.91 E-value=1.1e+02 Score=23.33 Aligned_cols=47 Identities=9% Similarity=0.107 Sum_probs=29.5
Q ss_pred CcEEEEEcCCCCC-ChhhHHHHhhhccCCCCCCcEEEEeCCChHHHHhh
Q 028606 55 KKFLLFLDDLWNV-NYDLWSYLCRPLVESCAPGSKDIITARFTDVATMV 102 (206)
Q Consensus 55 kr~LlVLDdv~~~-~~~~~~~l~~~l~~~~~~gs~IivTTr~~~v~~~~ 102 (206)
..=++++|..... +...-+.+...+. ....++.||+||...++...+
T Consensus 180 ~~~illlDEp~~~ld~~~~~~~~~~l~-~~~~~~~ii~~~h~~~~~~~~ 227 (243)
T cd03272 180 PAPFYLFDEIDAALDAQYRTAVANMIK-ELSDGAQFITTTFRPELLEVA 227 (243)
T ss_pred CCCEEEEECCccCCCHHHHHHHHHHHH-HHhCCCEEEEEecCHHHHhhC
Confidence 3458889987533 4444455555554 333378899999887766543
No 192
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=26.64 E-value=2.1e+02 Score=21.33 Aligned_cols=56 Identities=14% Similarity=0.134 Sum_probs=31.9
Q ss_pred HHHHHcCCCcEEEEEcCCCCC-ChhhHHHHhhhccCCCCCCcEEEEeCCChHHHHhh
Q 028606 47 KLKKQFSGKKFLLFLDDLWNV-NYDLWSYLCRPLVESCAPGSKDIITARFTDVATMV 102 (206)
Q Consensus 47 ~l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~~~~gs~IivTTr~~~v~~~~ 102 (206)
.+-+.|..+.=+++||.--.. +...-+.+...+......|..||++|.+.+....+
T Consensus 148 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~ 204 (216)
T TIGR00960 148 AIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETY 204 (216)
T ss_pred HHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh
Confidence 344455666678889976432 33333444444431112367799999987766543
No 193
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=26.50 E-value=2.1e+02 Score=21.96 Aligned_cols=53 Identities=8% Similarity=-0.010 Sum_probs=30.6
Q ss_pred HHHHcCCCcEEEEEcCCCCC-ChhhHHHHhhhccCCCCCCcEEEEeCCChHHHHh
Q 028606 48 LKKQFSGKKFLLFLDDLWNV-NYDLWSYLCRPLVESCAPGSKDIITARFTDVATM 101 (206)
Q Consensus 48 l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~~~~gs~IivTTr~~~v~~~ 101 (206)
+-..+..+.=+++||..-.. +....+.+...+. ....|..||++|.+...+..
T Consensus 157 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~-~~~~~~tiiivtH~~~~~~~ 210 (250)
T PRK14245 157 IARAMAVSPSVLLMDEPASALDPISTAKVEELIH-ELKKDYTIVIVTHNMQQAAR 210 (250)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHH-HHhcCCeEEEEeCCHHHHHh
Confidence 44445556668889976432 3444444544444 22235678888888775543
No 194
>PRK07952 DNA replication protein DnaC; Validated
Probab=26.45 E-value=50 Score=25.76 Aligned_cols=45 Identities=9% Similarity=0.045 Sum_probs=23.7
Q ss_pred HHcCCCcEEEEEcCCCCCChhhHHH--HhhhccCCCCCCcEEEEeCCC
Q 028606 50 KQFSGKKFLLFLDDLWNVNYDLWSY--LCRPLVESCAPGSKDIITARF 95 (206)
Q Consensus 50 ~~L~~kr~LlVLDdv~~~~~~~~~~--l~~~l~~~~~~gs~IivTTr~ 95 (206)
+.+. +-=+|||||+-......|+. +...+...-...-.+|+||..
T Consensus 158 ~~l~-~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl 204 (244)
T PRK07952 158 NDLS-NVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNS 204 (244)
T ss_pred HHhc-cCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCC
Confidence 3344 34478889996444455653 333332111223457778764
No 195
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=26.44 E-value=1.9e+02 Score=21.57 Aligned_cols=55 Identities=13% Similarity=0.144 Sum_probs=31.8
Q ss_pred HHHHcCCCcEEEEEcCCCCC-ChhhHHHHhhhccCCCCCCcEEEEeCCChHHHHhh
Q 028606 48 LKKQFSGKKFLLFLDDLWNV-NYDLWSYLCRPLVESCAPGSKDIITARFTDVATMV 102 (206)
Q Consensus 48 l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~~~~gs~IivTTr~~~v~~~~ 102 (206)
+-+.+..+.=+++||..-.. +...-+.+...+......|..||++|.+.+....+
T Consensus 143 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~ 198 (222)
T cd03224 143 IARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEI 198 (222)
T ss_pred HHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh
Confidence 34445556677888976432 34444444444431112477899999988765443
No 196
>cd05141 Barstar_evA4336-like Barstar_evA4336-like contains uncharacterized sequences similar to the uncharacterized, predicted RNAase inhibitor evA4336 found in Azoarcus sp. EvN1. This is a subfamily of the Barstar family of RNAase inhibitors. Barstar is an intracellular inhibitor of barnase, an extracellular ribonuclease of Bacillus amyloliquefaciens. Barstar binds tightly to the barnase active site and sterically blocks it thus inhibiting its potentially lethal RNase activity inside the cell. Barstar also binds and inhibits a ribonuclease called RNase Sa (produced by Streptomyces aureofaciens) which belongs to the same enzyme family as does barnase.
Probab=26.28 E-value=1.7e+02 Score=18.28 Aligned_cols=68 Identities=13% Similarity=0.089 Sum_probs=46.0
Q ss_pred EEeCCCCCHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHc--CCCcEEEEEcCCCC---CChhhHHHHhhhc
Q 028606 11 TYVGGDFDALKVTKSILKSIATDQPVDDNDLNLLQGKLKKQF--SGKKFLLFLDDLWN---VNYDLWSYLCRPL 79 (206)
Q Consensus 11 v~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~l~~~L--~~kr~LlVLDdv~~---~~~~~~~~l~~~l 79 (206)
+..++-.+...+.+.+.+.+ +-+.--..+.+.+.+-+...- ..+.+.+++.+... .....++.+...+
T Consensus 3 idg~~i~~~~~~~~~l~~~l-~fP~yfG~NlDAl~DcL~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~vl 75 (81)
T cd05141 3 LDLSGIADKAALLDALAAAL-DFPSWFGHNWDALADCLTDLSWWPAEGYVLVLRDGDALRAADPEDFATLLEIL 75 (81)
T ss_pred EecccCCCHHHHHHHHHHHc-CCCccccCCHHHHHHHHcCcccCCCCCeEEEEeCcHHhhhcCHHHHHHHHHHH
Confidence 34556678888899998888 555445678888888887773 56778888877541 1445555555444
No 197
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=26.06 E-value=2.2e+02 Score=21.83 Aligned_cols=47 Identities=11% Similarity=0.070 Sum_probs=29.1
Q ss_pred CCcEEEEEcCCCCC-C---hhh-HHHHhhhccCCCCCCcEEEEeCCChHHHHhh
Q 028606 54 GKKFLLFLDDLWNV-N---YDL-WSYLCRPLVESCAPGSKDIITARFTDVATMV 102 (206)
Q Consensus 54 ~kr~LlVLDdv~~~-~---~~~-~~~l~~~l~~~~~~gs~IivTTr~~~v~~~~ 102 (206)
.++-|++||..-.. + ... -..+...+. . ..++.+|++|.+.+++...
T Consensus 109 ~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~-~-~~~~~~i~~TH~~~l~~~~ 160 (222)
T cd03287 109 TSRSLVILDELGRGTSTHDGIAIAYATLHYLL-E-EKKCLVLFVTHYPSLGEIL 160 (222)
T ss_pred CCCeEEEEccCCCCCChhhHHHHHHHHHHHHH-h-ccCCeEEEEcccHHHHHHH
Confidence 46899999997422 1 111 112233333 2 2578999999999987654
No 198
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=25.42 E-value=2.1e+02 Score=21.09 Aligned_cols=51 Identities=16% Similarity=0.096 Sum_probs=30.3
Q ss_pred HHHHHcCCCcEEEEEcCCCCC-ChhhHHHHhhhccCCCCCCcEEEEeCCChH
Q 028606 47 KLKKQFSGKKFLLFLDDLWNV-NYDLWSYLCRPLVESCAPGSKDIITARFTD 97 (206)
Q Consensus 47 ~l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~~~~gs~IivTTr~~~ 97 (206)
.+-..+..+.=+++||+.-.. +....+.+...+......|..||++|.+..
T Consensus 121 ~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~ 172 (194)
T cd03213 121 SIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPS 172 (194)
T ss_pred HHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCch
Confidence 344555566668889986432 444445555444411224778888888864
No 199
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=25.42 E-value=1.3e+02 Score=23.20 Aligned_cols=46 Identities=11% Similarity=0.079 Sum_probs=27.8
Q ss_pred cEEEEEcCCCCC-ChhhHHHHhhhccCCCCCCcEEEEeCCChHHHHh
Q 028606 56 KFLLFLDDLWNV-NYDLWSYLCRPLVESCAPGSKDIITARFTDVATM 101 (206)
Q Consensus 56 r~LlVLDdv~~~-~~~~~~~l~~~l~~~~~~gs~IivTTr~~~v~~~ 101 (206)
.=+++||..-.. +....+.+...+......|..||++|.+.++...
T Consensus 178 p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~~~~~ 224 (247)
T cd03275 178 APFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKEEFFSK 224 (247)
T ss_pred CCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCHHHHhh
Confidence 457888976532 4444444444443112337789999998887654
No 200
>PHA01159 hypothetical protein
Probab=25.39 E-value=74 Score=21.68 Aligned_cols=24 Identities=13% Similarity=0.121 Sum_probs=20.4
Q ss_pred hHHHHHHHHhcCCCchhHHHHHhHh
Q 028606 170 TVSLVIKLLYIIISSRGLFNFYFYF 194 (206)
Q Consensus 170 ~i~~~L~~sy~~Lp~~~lk~CflY~ 194 (206)
++...+...|+.||++ +|--+..+
T Consensus 67 G~~s~i~s~fnaLPse-iR~~l~~f 90 (114)
T PHA01159 67 GVYTMVESRFNALPSD-IRYILTEF 90 (114)
T ss_pred CHHHHHHHHHHhCCHH-HHHHHHHH
Confidence 7788999999999999 98766655
No 201
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=25.15 E-value=2.8e+02 Score=20.39 Aligned_cols=56 Identities=9% Similarity=0.062 Sum_probs=33.2
Q ss_pred HHHHHHcCCCcEEEEEcCCCCC-ChhhHHHHhh-hccCCCCCCcEEEEeCCChHHHHh
Q 028606 46 GKLKKQFSGKKFLLFLDDLWNV-NYDLWSYLCR-PLVESCAPGSKDIITARFTDVATM 101 (206)
Q Consensus 46 ~~l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~-~l~~~~~~gs~IivTTr~~~v~~~ 101 (206)
-.+-+.+..+.=+++||+--.. +....+.+.. .+......|..||++|.+......
T Consensus 136 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~ 193 (204)
T cd03250 136 ISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPH 193 (204)
T ss_pred HHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhh
Confidence 3455566777888999986432 3444444443 222122347788888888776654
No 202
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=25.15 E-value=2.5e+02 Score=21.53 Aligned_cols=54 Identities=13% Similarity=0.017 Sum_probs=31.7
Q ss_pred HHHHHcCCCcEEEEEcCCCCC-ChhhHHHHhhhccCCCCCCcEEEEeCCChHHHHh
Q 028606 47 KLKKQFSGKKFLLFLDDLWNV-NYDLWSYLCRPLVESCAPGSKDIITARFTDVATM 101 (206)
Q Consensus 47 ~l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~~~~gs~IivTTr~~~v~~~ 101 (206)
.+-+.+..+.=+++||+.-.. +...-..+...+. ....|..||++|.+.+....
T Consensus 152 ~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~-~~~~~~tiii~tH~~~~~~~ 206 (246)
T PRK14269 152 CIARALAIKPKLLLLDEPTSALDPISSGVIEELLK-ELSHNLSMIMVTHNMQQGKR 206 (246)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHH-HHhCCCEEEEEecCHHHHHh
Confidence 345556666777889986432 3333344444443 22236778888888775544
No 203
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=25.14 E-value=1.6e+02 Score=21.79 Aligned_cols=56 Identities=16% Similarity=0.117 Sum_probs=32.9
Q ss_pred HHHHcCCCcEEEEEcCCCCC-ChhhHHHHhhhccCCCCCCcEEEEeCCChHHHHhhC
Q 028606 48 LKKQFSGKKFLLFLDDLWNV-NYDLWSYLCRPLVESCAPGSKDIITARFTDVATMVA 103 (206)
Q Consensus 48 l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~~~~gs~IivTTr~~~v~~~~~ 103 (206)
+-..+....=+++||.--.. +....+.+...+......|..||++|.+......++
T Consensus 140 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~ 196 (204)
T PRK13538 140 LARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDK 196 (204)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCC
Confidence 44445566678888976432 444445555444311223667888888877665554
No 204
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=25.12 E-value=2.2e+02 Score=21.82 Aligned_cols=53 Identities=9% Similarity=-0.004 Sum_probs=30.5
Q ss_pred HHHHcCCCcEEEEEcCCCCC-ChhhHHHHhhhccCCCCCCcEEEEeCCChHHHHh
Q 028606 48 LKKQFSGKKFLLFLDDLWNV-NYDLWSYLCRPLVESCAPGSKDIITARFTDVATM 101 (206)
Q Consensus 48 l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~~~~gs~IivTTr~~~v~~~ 101 (206)
+-..+..+.=+++||..-.. +...-+.+...+. ....+..||++|.+.+....
T Consensus 160 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~-~~~~~~tiii~sH~~~~~~~ 213 (253)
T PRK14267 160 IARALAMKPKILLMDEPTANIDPVGTAKIEELLF-ELKKEYTIVLVTHSPAQAAR 213 (253)
T ss_pred HHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHH-HHhhCCEEEEEECCHHHHHh
Confidence 34445566678888976432 3444444444443 22235678888888776544
No 205
>PF09675 Chlamy_scaf: Chlamydia-phage Chp2 scaffold (Chlamy_scaf); InterPro: IPR014131 Members of this entry are encoded by genes in chlamydiaphage such as Vp3. These viruses have around eight genes and infect obligately intracellular bacterial pathogens of the genus Chlamydia. This protein is annotated as VP3 or structural protein (as if a protein of mature viral particles), however, it is displaced from procapsids as DNA is packaged, and therefore is more correctly described as a scaffolding protein.
Probab=25.10 E-value=29 Score=23.38 Aligned_cols=15 Identities=0% Similarity=0.007 Sum_probs=13.3
Q ss_pred HhcCCCchhHHHHHhH
Q 028606 178 LYIIISSRGLFNFYFY 193 (206)
Q Consensus 178 sy~~Lp~~~lk~CflY 193 (206)
-|+.||.+ .|.||--
T Consensus 46 aFd~LPa~-iRe~F~N 60 (114)
T PF09675_consen 46 AFDELPAH-IRERFNN 60 (114)
T ss_pred HHHHchHH-HHHHhCC
Confidence 58999999 9999965
No 206
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=25.02 E-value=3.6e+02 Score=23.76 Aligned_cols=73 Identities=14% Similarity=0.116 Sum_probs=42.3
Q ss_pred CCcEEEEEcCCCCC----C---hhh-----HHHHhhhccC-CCCCCcEEEEeCCChHHHHh--h---CCCCceeCCCCCH
Q 028606 54 GKKFLLFLDDLWNV----N---YDL-----WSYLCRPLVE-SCAPGSKDIITARFTDVATM--V---ATTSTYPLECLSD 115 (206)
Q Consensus 54 ~kr~LlVLDdv~~~----~---~~~-----~~~l~~~l~~-~~~~gs~IivTTr~~~v~~~--~---~~~~~~~l~~L~~ 115 (206)
++.++|++|++..- . ... ...+...+.. ....+..||.||...+.... . ..+..+.+...+.
T Consensus 288 g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~ 367 (512)
T TIGR03689 288 GRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDA 367 (512)
T ss_pred CCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCH
Confidence 46899999998621 0 111 1233333330 11234456666665443211 1 1244689999999
Q ss_pred HHHHHHHHHhh
Q 028606 116 EDCLRILAEQS 126 (206)
Q Consensus 116 ~~~~~Lf~~~a 126 (206)
++..++|..+.
T Consensus 368 e~r~~Il~~~l 378 (512)
T TIGR03689 368 EAAADIFSKYL 378 (512)
T ss_pred HHHHHHHHHHh
Confidence 99999999876
No 207
>PRK04966 hypothetical protein; Provisional
Probab=25.00 E-value=1.8e+02 Score=18.07 Aligned_cols=29 Identities=17% Similarity=0.312 Sum_probs=24.8
Q ss_pred CCCCHHHHHHHHHHHcCCCcEEEEEcCCC
Q 028606 37 DDNDLNLLQGKLKKQFSGKKFLLFLDDLW 65 (206)
Q Consensus 37 ~~~~~~~~~~~l~~~L~~kr~LlVLDdv~ 65 (206)
...+++.....++..|+....+||.|...
T Consensus 31 ~E~sl~~kv~qv~~qL~~G~~viv~se~~ 59 (72)
T PRK04966 31 HERSLEQKVADVKRQLQSGEAVLVWSELH 59 (72)
T ss_pred ccccHHHHHHHHHHHHHcCCEEEEECCCC
Confidence 35678888999999999999999999764
No 208
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=24.94 E-value=2.2e+02 Score=21.89 Aligned_cols=53 Identities=9% Similarity=0.051 Sum_probs=30.9
Q ss_pred HHHHcCCCcEEEEEcCCCCC-ChhhHHHHhhhccCCCCCCcEEEEeCCChHHHHh
Q 028606 48 LKKQFSGKKFLLFLDDLWNV-NYDLWSYLCRPLVESCAPGSKDIITARFTDVATM 101 (206)
Q Consensus 48 l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~~~~gs~IivTTr~~~v~~~ 101 (206)
+-..+..+.=+++||+.-.. +...-+.+...+. ....|..||++|.+.+....
T Consensus 160 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~-~~~~~~tiiiisH~~~~~~~ 213 (251)
T PRK14244 160 IARAIAVKPTMLLMDEPCSALDPVATNVIENLIQ-ELKKNFTIIVVTHSMKQAKK 213 (251)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHH-HHhcCCeEEEEeCCHHHHHh
Confidence 44445556678888976422 3444444544444 22236778888888776544
No 209
>PRK09183 transposase/IS protein; Provisional
Probab=24.87 E-value=57 Score=25.62 Aligned_cols=40 Identities=18% Similarity=0.296 Sum_probs=20.7
Q ss_pred CcEEEEEcCCCCCChhhHH--HHhhhccCCCCCCcEEEEeCCC
Q 028606 55 KKFLLFLDDLWNVNYDLWS--YLCRPLVESCAPGSKDIITARF 95 (206)
Q Consensus 55 kr~LlVLDdv~~~~~~~~~--~l~~~l~~~~~~gs~IivTTr~ 95 (206)
+.-++|+||+.......+. .+...+......++ +|+||..
T Consensus 164 ~~dlLiiDdlg~~~~~~~~~~~lf~li~~r~~~~s-~iiTsn~ 205 (259)
T PRK09183 164 APRLLIIDEIGYLPFSQEEANLFFQVIAKRYEKGS-MILTSNL 205 (259)
T ss_pred CCCEEEEcccccCCCChHHHHHHHHHHHHHHhcCc-EEEecCC
Confidence 3459999999742222222 23333321112354 7888864
No 210
>PRK06526 transposase; Provisional
Probab=24.79 E-value=62 Score=25.37 Aligned_cols=40 Identities=15% Similarity=0.163 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCCChhhH--HHHhhhccCCCCCCcEEEEeCCCh
Q 028606 56 KFLLFLDDLWNVNYDLW--SYLCRPLVESCAPGSKDIITARFT 96 (206)
Q Consensus 56 r~LlVLDdv~~~~~~~~--~~l~~~l~~~~~~gs~IivTTr~~ 96 (206)
.-+||+||+.......+ +.+...+......++ +|+||...
T Consensus 160 ~dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~s-~IitSn~~ 201 (254)
T PRK06526 160 YPLLIVDEVGYIPFEPEAANLFFQLVSSRYERAS-LIVTSNKP 201 (254)
T ss_pred CCEEEEcccccCCCCHHHHHHHHHHHHHHHhcCC-EEEEcCCC
Confidence 35899999963211122 223333320112344 88888754
No 211
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=24.75 E-value=2.1e+02 Score=21.17 Aligned_cols=55 Identities=15% Similarity=0.114 Sum_probs=31.6
Q ss_pred HHHHcCCCcEEEEEcCCCCC-ChhhHHHHhhhccCCCCCCcEEEEeCCChHHHHhh
Q 028606 48 LKKQFSGKKFLLFLDDLWNV-NYDLWSYLCRPLVESCAPGSKDIITARFTDVATMV 102 (206)
Q Consensus 48 l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~~~~gs~IivTTr~~~v~~~~ 102 (206)
+-..+..+.=+++||..-.. +...-+.+...+......|..||++|.+.+.+..+
T Consensus 139 la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~ 194 (210)
T cd03269 139 FIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEEL 194 (210)
T ss_pred HHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHh
Confidence 44445556668899986432 33333444433331122467899999988766443
No 212
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=24.72 E-value=2.9e+02 Score=20.46 Aligned_cols=55 Identities=9% Similarity=0.086 Sum_probs=31.6
Q ss_pred HHHHHcCCCcEEEEEcCCCCC-ChhhHHHHhhhccCCCCCCcEEEEeCCChHHHHhh
Q 028606 47 KLKKQFSGKKFLLFLDDLWNV-NYDLWSYLCRPLVESCAPGSKDIITARFTDVATMV 102 (206)
Q Consensus 47 ~l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~~~~gs~IivTTr~~~v~~~~ 102 (206)
.+-..+..+.=+++||+--.. +...-+.+...+. ....+..||++|.+.+....+
T Consensus 140 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~-~~~~~~tii~vsH~~~~~~~~ 195 (211)
T cd03264 140 GIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLS-ELGEDRIVILSTHIVEDVESL 195 (211)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHH-HHhCCCEEEEEcCCHHHHHHh
Confidence 344556667778899976432 3333334444443 222246688888887766543
No 213
>PRK13700 conjugal transfer protein TraD; Provisional
Probab=24.67 E-value=2.1e+02 Score=26.38 Aligned_cols=42 Identities=17% Similarity=0.139 Sum_probs=28.7
Q ss_pred CCCcEEEEEcCCCCCChhhHHHHhhhccCCCCCCcEEEEeCCCh
Q 028606 53 SGKKFLLFLDDLWNVNYDLWSYLCRPLVESCAPGSKDIITARFT 96 (206)
Q Consensus 53 ~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~~gs~IivTTr~~ 96 (206)
.++|++++||.+- +...+..+...+....+.|.++++..++-
T Consensus 416 ~~rRlw~~lDElp--sLgkLp~L~~~La~~Rk~G~~~vlGiQs~ 457 (732)
T PRK13700 416 RNRRVWFFCDELP--TLHKLPDLVEILPEARKFGGCYVFGIQSY 457 (732)
T ss_pred CCCcEEEEEECcc--ccccchhHHHHHHHHHhcCCEEEEEeCCH
Confidence 3578999999987 66666666666653345577777766643
No 214
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=24.39 E-value=2.5e+02 Score=21.77 Aligned_cols=54 Identities=9% Similarity=-0.017 Sum_probs=32.1
Q ss_pred HHHHcCCCcEEEEEcCCCCC-ChhhHHHHhhhccCC--CCCCcEEEEeCCChHHHHhh
Q 028606 48 LKKQFSGKKFLLFLDDLWNV-NYDLWSYLCRPLVES--CAPGSKDIITARFTDVATMV 102 (206)
Q Consensus 48 l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~--~~~gs~IivTTr~~~v~~~~ 102 (206)
+-..+..+.=+++||..-.. +....+.+...+. . ...|..||++|.+...+..+
T Consensus 161 laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~-~l~~~~~~tiiivsH~~~~i~~~ 217 (261)
T PRK14258 161 IARALAVKPKVLLMDEPCFGLDPIASMKVESLIQ-SLRLRSELTMVIVSHNLHQVSRL 217 (261)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHH-HHHHhCCCEEEEEECCHHHHHHh
Confidence 44445556677888976432 4444445544444 2 12367788888887766554
No 215
>PRK04195 replication factor C large subunit; Provisional
Probab=24.38 E-value=2.1e+02 Score=24.69 Aligned_cols=69 Identities=13% Similarity=0.080 Sum_probs=41.8
Q ss_pred CcEEEEEcCCCCCCh----hhHHHHhhhccCCCCCCcEEEEeCCChH-HHH-hh-CCCCceeCCCCCHHHHHHHHHHhh
Q 028606 55 KKFLLFLDDLWNVNY----DLWSYLCRPLVESCAPGSKDIITARFTD-VAT-MV-ATTSTYPLECLSDEDCLRILAEQS 126 (206)
Q Consensus 55 kr~LlVLDdv~~~~~----~~~~~l~~~l~~~~~~gs~IivTTr~~~-v~~-~~-~~~~~~~l~~L~~~~~~~Lf~~~a 126 (206)
++-+||+|++..-.. .....+...+. ..+..||+|+.+.. ... .. .....+.+.+++.++....+...+
T Consensus 98 ~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~---~~~~~iIli~n~~~~~~~k~Lrsr~~~I~f~~~~~~~i~~~L~~i~ 173 (482)
T PRK04195 98 RRKLILLDEVDGIHGNEDRGGARAILELIK---KAKQPIILTANDPYDPSLRELRNACLMIEFKRLSTRSIVPVLKRIC 173 (482)
T ss_pred CCeEEEEecCcccccccchhHHHHHHHHHH---cCCCCEEEeccCccccchhhHhccceEEEecCCCHHHHHHHHHHHH
Confidence 677999999973211 33555555554 23445666665322 111 11 223568899999998888887766
No 216
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=24.26 E-value=1.8e+02 Score=22.10 Aligned_cols=53 Identities=13% Similarity=0.135 Sum_probs=31.5
Q ss_pred HHHHcCCCcEEEEEcCCCCC-ChhhHHHHhhhccCCC--CCCcEEEEeCCChHHHHh
Q 028606 48 LKKQFSGKKFLLFLDDLWNV-NYDLWSYLCRPLVESC--APGSKDIITARFTDVATM 101 (206)
Q Consensus 48 l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~~--~~gs~IivTTr~~~v~~~ 101 (206)
+-+.+..+.=+++||+.-.. +....+.+...+. .. ..|..||++|.+......
T Consensus 141 laral~~~p~llllDEP~~gLD~~~~~~l~~~l~-~~~~~~~~tiii~sh~~~~~~~ 196 (232)
T cd03300 141 IARALVNEPKVLLLDEPLGALDLKLRKDMQLELK-RLQKELGITFVFVTHDQEEALT 196 (232)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHH-HHHHHcCCEEEEEeCCHHHHHH
Confidence 44455566677888987532 4444455554443 21 237788888887775443
No 217
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=24.18 E-value=2.5e+02 Score=21.76 Aligned_cols=53 Identities=9% Similarity=0.031 Sum_probs=30.6
Q ss_pred HHHHcCCCcEEEEEcCCCCC-ChhhHHHHhhhccCCCCCCcEEEEeCCChHHHHh
Q 028606 48 LKKQFSGKKFLLFLDDLWNV-NYDLWSYLCRPLVESCAPGSKDIITARFTDVATM 101 (206)
Q Consensus 48 l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~~~~gs~IivTTr~~~v~~~ 101 (206)
+-..+....=+++||+.-.. +...-+.+...+. ....|..||++|.+.+.+..
T Consensus 167 laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~-~~~~~~tiii~sH~~~~~~~ 220 (260)
T PRK10744 167 IARGIAIRPEVLLLDEPCSALDPISTGRIEELIT-ELKQDYTVVIVTHNMQQAAR 220 (260)
T ss_pred HHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHH-HHhcCCeEEEEeCCHHHHHH
Confidence 44455566778899986532 3333344444443 22235568888887776544
No 218
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=24.18 E-value=2.2e+02 Score=21.44 Aligned_cols=55 Identities=15% Similarity=0.209 Sum_probs=32.4
Q ss_pred HHHHHcCCCcEEEEEcCCCCC-ChhhHHHHhhhccCCCCCCcEEEEeCCChHHHHh
Q 028606 47 KLKKQFSGKKFLLFLDDLWNV-NYDLWSYLCRPLVESCAPGSKDIITARFTDVATM 101 (206)
Q Consensus 47 ~l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~~~~gs~IivTTr~~~v~~~ 101 (206)
.+-..+..+.-++++|+--.. +...-+.+...+......|..||++|.+.+....
T Consensus 123 ~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~tvii~sH~~~~~~~ 178 (223)
T TIGR03771 123 LVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTHDLAQAMA 178 (223)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence 455566677788999976432 3334444444443112247788888888775544
No 219
>KOG2634 consensus Initiator tRNA phosphoribosyl-transferase [RNA processing and modification]
Probab=24.14 E-value=1.4e+02 Score=24.81 Aligned_cols=93 Identities=15% Similarity=0.150 Sum_probs=52.1
Q ss_pred EEEeCCCCCHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHcC-----CCcEEEEEcCCCCCChhhHHHHhhhccCCCC
Q 028606 10 STYVGGDFDALKVTKSILKSIATDQPVDDNDLNLLQGKLKKQFS-----GKKFLLFLDDLWNVNYDLWSYLCRPLVESCA 84 (206)
Q Consensus 10 wv~vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~l~~~L~-----~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~ 84 (206)
||.-+..-.+++-+.+....+ . ..+.|.+.+.+.+.+-|+ .+..|.-+-.|. +.+.|+ ..|
T Consensus 161 ~vp~tE~~sI~~rlde~v~~L-~---~sgiD~~~La~~l~KplRPlWV~p~s~l~s~~ev~--Ey~sw~----ftp---- 226 (476)
T KOG2634|consen 161 WVPNTERASIEARLDEWVREL-D---ESGIDIASLASCLRKPLRPLWVSPKSVLWSLNEVP--EYDSWD----FTP---- 226 (476)
T ss_pred cCCchhHHHHHHHhHHHHHHH-H---HcCCCHHHHHHHHhccCcceeecccceeecccCcc--cccccc----cee----
Confidence 554444444555555666655 2 123677778888887664 355665677776 667776 233
Q ss_pred CCcEEEEeCCChHHHHhhCCCC--ceeCCCCCHHHHHH
Q 028606 85 PGSKDIITARFTDVATMVATTS--TYPLECLSDEDCLR 120 (206)
Q Consensus 85 ~gs~IivTTr~~~v~~~~~~~~--~~~l~~L~~~~~~~ 120 (206)
||+.|-..++...+...+ .|--..-+++|+|.
T Consensus 227 ----~iLvtaSaq~Qng~s~e~gf~YvqGAaDDeE~Ws 260 (476)
T KOG2634|consen 227 ----LILVTASAQLQNGTSSEFGFNYVQGAADDEESWS 260 (476)
T ss_pred ----EEEEEeehhhhcCccccccceeccCcCCcHHHHh
Confidence 555555555655544322 33333356666664
No 220
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=24.13 E-value=2e+02 Score=20.81 Aligned_cols=55 Identities=15% Similarity=0.105 Sum_probs=32.1
Q ss_pred HHHHHcCCCcEEEEEcCCCCC-ChhhHHHHhhhccCCCCC-CcEEEEeCCChHHHHh
Q 028606 47 KLKKQFSGKKFLLFLDDLWNV-NYDLWSYLCRPLVESCAP-GSKDIITARFTDVATM 101 (206)
Q Consensus 47 ~l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~~~~-gs~IivTTr~~~v~~~ 101 (206)
.+-+.+....=+++||..-.. +...-+.+...+...... |..||++|.+.+....
T Consensus 107 ~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~ 163 (180)
T cd03214 107 LLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAAR 163 (180)
T ss_pred HHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 345556667778889976432 344444444444311122 6788999988776544
No 221
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=24.03 E-value=2.1e+02 Score=21.14 Aligned_cols=55 Identities=11% Similarity=0.106 Sum_probs=32.5
Q ss_pred HHHHHcCCCcEEEEEcCCCCC-ChhhHHHHhhhccCCCCCCcEEEEeCCChHHHHh
Q 028606 47 KLKKQFSGKKFLLFLDDLWNV-NYDLWSYLCRPLVESCAPGSKDIITARFTDVATM 101 (206)
Q Consensus 47 ~l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~~~~gs~IivTTr~~~v~~~ 101 (206)
.+-..+....=+++||+.-.. +....+.+...+..-...|..||++|.+.+.+..
T Consensus 114 ~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~ 169 (200)
T cd03217 114 EILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDY 169 (200)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHH
Confidence 345555666678899986432 4444444444443111236778999988887664
No 222
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=24.03 E-value=2.2e+02 Score=22.19 Aligned_cols=54 Identities=7% Similarity=0.014 Sum_probs=31.1
Q ss_pred HHHHcCCCcEEEEEcCCCCC-ChhhHHHHhhhccCCCCCCcEEEEeCCChHHHHhh
Q 028606 48 LKKQFSGKKFLLFLDDLWNV-NYDLWSYLCRPLVESCAPGSKDIITARFTDVATMV 102 (206)
Q Consensus 48 l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~~~~gs~IivTTr~~~v~~~~ 102 (206)
+-..|..+.=+++||..-.. +......+...+. ....+..||++|.+.+.+...
T Consensus 174 laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~-~l~~~~tiiivtH~~~~~~~~ 228 (267)
T PRK14235 174 IARAIAVSPEVILMDEPCSALDPIATAKVEELID-ELRQNYTIVIVTHSMQQAARV 228 (267)
T ss_pred HHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHH-HHhcCCeEEEEEcCHHHHHhh
Confidence 44445566678899986432 4444444444443 222355788888877765443
No 223
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=24.02 E-value=2.5e+02 Score=21.63 Aligned_cols=54 Identities=7% Similarity=0.039 Sum_probs=30.3
Q ss_pred HHHHcCCCcEEEEEcCCCCC-ChhhHHHHhhhccCCCCCCcEEEEeCCChHHHHhh
Q 028606 48 LKKQFSGKKFLLFLDDLWNV-NYDLWSYLCRPLVESCAPGSKDIITARFTDVATMV 102 (206)
Q Consensus 48 l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~~~~gs~IivTTr~~~v~~~~ 102 (206)
+-+.|..+.=+++||..-.. +...-+.+...+. ....+..||++|.+.+.+..+
T Consensus 161 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~-~~~~~~tvii~sH~~~~~~~~ 215 (254)
T PRK14273 161 IARTLAIEPNVILMDEPTSALDPISTGKIEELII-NLKESYTIIIVTHNMQQAGRI 215 (254)
T ss_pred HHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHH-HHhcCCEEEEEeCCHHHHHHh
Confidence 33444455668899976432 3333333444443 222356788888888766543
No 224
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=23.99 E-value=2.7e+02 Score=21.51 Aligned_cols=54 Identities=13% Similarity=0.108 Sum_probs=31.3
Q ss_pred HHHHHcCCCcEEEEEcCCCCC-ChhhHHHHhhhccCCCCCCcEEEEeCCChHHHHh
Q 028606 47 KLKKQFSGKKFLLFLDDLWNV-NYDLWSYLCRPLVESCAPGSKDIITARFTDVATM 101 (206)
Q Consensus 47 ~l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~~~~gs~IivTTr~~~v~~~ 101 (206)
.+-+.+..+.=+++||+--.. +...-+.+...+. ....|..||++|.+.+....
T Consensus 166 ~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~-~~~~~~tiii~sh~~~~~~~ 220 (257)
T cd03288 166 CLARAFVRKSSILIMDEATASIDMATENILQKVVM-TAFADRTVVTIAHRVSTILD 220 (257)
T ss_pred HHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHH-HhcCCCEEEEEecChHHHHh
Confidence 344455566667888876422 3333334444443 22346788888888777654
No 225
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=23.98 E-value=2.1e+02 Score=21.16 Aligned_cols=54 Identities=15% Similarity=0.151 Sum_probs=30.2
Q ss_pred HHHHcCCCcEEEEEcCCCCC-ChhhHHHHhhhccCCCCCCcEEEEeCCChHHHHh
Q 028606 48 LKKQFSGKKFLLFLDDLWNV-NYDLWSYLCRPLVESCAPGSKDIITARFTDVATM 101 (206)
Q Consensus 48 l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~~~~gs~IivTTr~~~v~~~ 101 (206)
+-+.+..+.=+++||..-.. +...-+.+...+......|..||++|++..-...
T Consensus 136 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~ 190 (201)
T cd03231 136 LARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSE 190 (201)
T ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhh
Confidence 44445555567888976432 4444455555443112346778888886554433
No 226
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=23.94 E-value=2.5e+02 Score=22.03 Aligned_cols=61 Identities=13% Similarity=0.003 Sum_probs=36.0
Q ss_pred HHHHcCCCcEEEEEcCCCCC-ChhhHHHHhhhccCCCCCCcEEEEeCCChHHHHhhCCCCceeC
Q 028606 48 LKKQFSGKKFLLFLDDLWNV-NYDLWSYLCRPLVESCAPGSKDIITARFTDVATMVATTSTYPL 110 (206)
Q Consensus 48 l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~~~~gs~IivTTr~~~v~~~~~~~~~~~l 110 (206)
+-..|..+.=+++||..-.. +...-+.+...+. ....+..||++|++......+. +.++.+
T Consensus 172 LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~-~~~~~~tiii~sH~~~~~~~~~-d~i~~l 233 (274)
T PRK14265 172 IARAIAMKPDVLLMDEPCSALDPISTRQVEELCL-ELKEQYTIIMVTHNMQQASRVA-DWTAFF 233 (274)
T ss_pred HHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHH-HHhcCCEEEEEeCCHHHHHHhC-CEEEEE
Confidence 44445566778899976432 4444445554444 2223567999999887665543 344444
No 227
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=23.92 E-value=1.1e+02 Score=21.06 Aligned_cols=41 Identities=15% Similarity=0.054 Sum_probs=27.0
Q ss_pred CcEEEEEcCCCCCChhhHHHHhhhccCCCCCCcEEEEeCCC
Q 028606 55 KKFLLFLDDLWNVNYDLWSYLCRPLVESCAPGSKDIITARF 95 (206)
Q Consensus 55 kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~~gs~IivTTr~ 95 (206)
+.-.++|+|+..-+...-..+...+......+.|+|.||+.
T Consensus 69 ~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~ 109 (138)
T PF14532_consen 69 KGGTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQ 109 (138)
T ss_dssp TTSEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC
T ss_pred CCCEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCC
Confidence 55567788887545666666666665223567899999873
No 228
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=23.89 E-value=2.3e+02 Score=21.59 Aligned_cols=55 Identities=15% Similarity=0.116 Sum_probs=33.0
Q ss_pred HHHHcCCCcEEEEEcCCCCC-ChhhHHHHhhhccCC-CCCCcEEEEeCCChHHHHhh
Q 028606 48 LKKQFSGKKFLLFLDDLWNV-NYDLWSYLCRPLVES-CAPGSKDIITARFTDVATMV 102 (206)
Q Consensus 48 l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~-~~~gs~IivTTr~~~v~~~~ 102 (206)
+-..+..+.=+++||..-.. +...-+.+...+... ...|..||++|++.+.+..+
T Consensus 164 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~ 220 (236)
T cd03267 164 IAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEAL 220 (236)
T ss_pred HHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHh
Confidence 44455666678999986532 444444444444311 22367799999988865543
No 229
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=23.78 E-value=2.3e+02 Score=22.09 Aligned_cols=53 Identities=13% Similarity=0.038 Sum_probs=29.5
Q ss_pred HHHHcCCCcEEEEEcCCCCC-ChhhHHHHhhhccCCCCCCcEEEEeCCChHHHHh
Q 028606 48 LKKQFSGKKFLLFLDDLWNV-NYDLWSYLCRPLVESCAPGSKDIITARFTDVATM 101 (206)
Q Consensus 48 l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~~~~gs~IivTTr~~~v~~~ 101 (206)
+-+.+..+.=+++||..-.. +....+.+...+. ...++..||++|.+.+....
T Consensus 174 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~-~~~~~~tiii~tH~~~~~~~ 227 (267)
T PRK14237 174 IARAIAVKPDILLMDEPASALDPISTMQLEETMF-ELKKNYTIIIVTHNMQQAAR 227 (267)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHH-HHhcCCEEEEEecCHHHHHH
Confidence 34444555567888976432 3334444444443 22235678888887765543
No 230
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=23.74 E-value=2.3e+02 Score=21.91 Aligned_cols=53 Identities=8% Similarity=0.035 Sum_probs=30.7
Q ss_pred HHHHcCCCcEEEEEcCCCCC-ChhhHHHHhhhccCCCCCCcEEEEeCCChHHHHh
Q 028606 48 LKKQFSGKKFLLFLDDLWNV-NYDLWSYLCRPLVESCAPGSKDIITARFTDVATM 101 (206)
Q Consensus 48 l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~~~~gs~IivTTr~~~v~~~ 101 (206)
+-+.|....=+++||..-.. +......+...+. ....|..||++|.+.+.+..
T Consensus 165 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~-~l~~~~tiiivsH~~~~~~~ 218 (258)
T PRK14268 165 IARTLAVKPKIILFDEPTSALDPISTARIEDLIM-NLKKDYTIVIVTHNMQQAAR 218 (258)
T ss_pred HHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHH-HHhhCCEEEEEECCHHHHHH
Confidence 44445556678889976432 3444444444443 22236778888888776544
No 231
>PF04084 ORC2: Origin recognition complex subunit 2 ; InterPro: IPR007220 The Origin Recognition Complex (ORC) is a six-subunit ATP-dependent DNA-binding complex encoded in yeast by ORC1-6 []. ORC is a central component for eukaryotic DNA replication, and binds chromatin at replication origins throughout the cell cycle []. ORC directs DNA replication throughout the genome and is required for its initiation [, , ]. ORC bound at replication origins serves as the foundation for assembly of the pre-replicative complex (pre-RC), which includes Cdc6, Tah11 (aka Cdt1), and the Mcm2-7 complex [, , ]. Pre-RC assembly during G1 is required for replication licensing of chromosomes prior to DNA synthesis during S phase [, , ]. Cell cycle-regulated phosphorylation of Orc2, Orc6, Cdc6, and MCM by the cyclin-dependent protein kinase Cdc28 regulates initiation of DNA replication, including blocking reinitiation in G2/M phase [, , , ]. In yeast, ORC also plays a role in the establishment of silencing at the mating-type loci Hidden MAT Left (HML) and Hidden MAT Right (HMR) [, , ]. ORC participates in the assembly of transcriptionally silent chromatin at HML and HMR by recruiting the Sir1 silencing protein to the HML and HMR silencers [, , ]. Both Orc1 and Orc5 bind ATP, though only Orc1 has ATPase activity []. The binding of ATP by Orc1 is required for ORC binding to DNA and is essential for cell viability []. The ATPase activity of Orc1 is involved in formation of the pre-RC [, , ]. ATP binding by Orc5 is crucial for the stability of ORC as a whole. Only the Orc1-5 subunits are required for origin binding; Orc6 is essential for maintenance of pre-RCs once formed []. Interactions within ORC suggest that Orc2-3-6 may form a core complex []. ORC homologues have been found in various eukaryotes, including fission yeast, insects, amphibians, and humans []. This entry represents subunit 2, which binds the origin of replication. It plays a role in chromosome replication and mating type transcriptional silencing.; GO: 0006260 DNA replication, 0000808 origin recognition complex, 0005634 nucleus
Probab=23.64 E-value=4.1e+02 Score=21.75 Aligned_cols=51 Identities=4% Similarity=0.065 Sum_probs=36.5
Q ss_pred CCCCHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHcCC----CcEEEEEcCCC
Q 028606 15 GDFDALKVTKSILKSIATDQPVDDNDLNLLQGKLKKQFSG----KKFLLFLDDLW 65 (206)
Q Consensus 15 ~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~l~~~L~~----kr~LlVLDdv~ 65 (206)
+..++++++..|...+............+..+.+.+.+.. .+..||+.+++
T Consensus 93 p~~~~k~il~~I~~~l~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~l~lvIHnID 147 (326)
T PF04084_consen 93 PSLSIKDILNTIEEALLPEPSKKPKSPSEQLDFIISYLESRPSPPPLYLVIHNID 147 (326)
T ss_pred CCCcHHHHHHHHHHHHhhhcccccCCHHHHHHHHHHHHhccCCCCceEEEEECCC
Confidence 3568999999999998333244455666666777777754 48889999887
No 232
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=23.57 E-value=2.5e+02 Score=21.33 Aligned_cols=54 Identities=13% Similarity=0.198 Sum_probs=32.6
Q ss_pred HHHHcCCCcEEEEEcCCCCC-ChhhHHHHhhhccCCCCCCcEEEEeCCChHHHHh
Q 028606 48 LKKQFSGKKFLLFLDDLWNV-NYDLWSYLCRPLVESCAPGSKDIITARFTDVATM 101 (206)
Q Consensus 48 l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~~~~gs~IivTTr~~~v~~~ 101 (206)
+-+.+..+.=+++||..-.. +....+.+...+......|..||++|.+......
T Consensus 152 laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~ 206 (242)
T PRK11124 152 IARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARK 206 (242)
T ss_pred HHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence 44445556668899986532 4455555555544112246778888888776644
No 233
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=23.56 E-value=2.3e+02 Score=22.20 Aligned_cols=53 Identities=9% Similarity=-0.016 Sum_probs=30.4
Q ss_pred HHHHcCCCcEEEEEcCCCCC-ChhhHHHHhhhccCCCCCCcEEEEeCCChHHHHh
Q 028606 48 LKKQFSGKKFLLFLDDLWNV-NYDLWSYLCRPLVESCAPGSKDIITARFTDVATM 101 (206)
Q Consensus 48 l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~~~~gs~IivTTr~~~v~~~ 101 (206)
+-+.+..+.=+++||.--.. +...-..+...+. ....+..||++|.+.+.+..
T Consensus 179 laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~-~~~~~~tiiivtH~~~~~~~ 232 (272)
T PRK14236 179 IARAIAIEPEVLLLDEPTSALDPISTLKIEELIT-ELKSKYTIVIVTHNMQQAAR 232 (272)
T ss_pred HHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHH-HHHhCCeEEEEeCCHHHHHh
Confidence 44445566778899976432 3444444444443 22235578888888765544
No 234
>CHL00095 clpC Clp protease ATP binding subunit
Probab=23.49 E-value=1.3e+02 Score=28.14 Aligned_cols=48 Identities=17% Similarity=0.257 Sum_probs=31.9
Q ss_pred HHHHHcCCCc-EEEEEcCCCCCChhhHHHHhhhccCCC-----------CCCcEEEEeCCC
Q 028606 47 KLKKQFSGKK-FLLFLDDLWNVNYDLWSYLCRPLVESC-----------APGSKDIITARF 95 (206)
Q Consensus 47 ~l~~~L~~kr-~LlVLDdv~~~~~~~~~~l~~~l~~~~-----------~~gs~IivTTr~ 95 (206)
.+.+.++.+. .++++|++...+...+..+...+. .+ ...+.||+||..
T Consensus 602 ~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le-~g~~~d~~g~~v~~~~~i~I~Tsn~ 661 (821)
T CHL00095 602 QLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILD-DGRLTDSKGRTIDFKNTLIIMTSNL 661 (821)
T ss_pred hHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhc-cCceecCCCcEEecCceEEEEeCCc
Confidence 3555565554 588899997667777888777765 32 234567777764
No 235
>PRK10908 cell division protein FtsE; Provisional
Probab=23.28 E-value=2.3e+02 Score=21.20 Aligned_cols=55 Identities=13% Similarity=0.070 Sum_probs=30.9
Q ss_pred HHHHcCCCcEEEEEcCCCCC-ChhhHHHHhhhccCCCCCCcEEEEeCCChHHHHhh
Q 028606 48 LKKQFSGKKFLLFLDDLWNV-NYDLWSYLCRPLVESCAPGSKDIITARFTDVATMV 102 (206)
Q Consensus 48 l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~~~~gs~IivTTr~~~v~~~~ 102 (206)
+-..+..+.=+++||.--.. +...-+.+...+......|..||++|.+.+....+
T Consensus 148 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~ 203 (222)
T PRK10908 148 IARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRR 203 (222)
T ss_pred HHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh
Confidence 44445556668899976432 33333334333331112367789999887766554
No 236
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=23.19 E-value=2.1e+02 Score=18.69 Aligned_cols=21 Identities=19% Similarity=0.398 Sum_probs=13.2
Q ss_pred HHHHHHcCCCcEEEEEcCCCCC
Q 028606 46 GKLKKQFSGKKFLLFLDDLWNV 67 (206)
Q Consensus 46 ~~l~~~L~~kr~LlVLDdv~~~ 67 (206)
.....-..+.++ +|+||+...
T Consensus 41 ~~~w~gY~~q~v-vi~DD~~~~ 61 (107)
T PF00910_consen 41 DKFWDGYQGQPV-VIIDDFGQD 61 (107)
T ss_pred cchhhccCCCcE-EEEeecCcc
Confidence 344555555555 788999754
No 237
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=23.16 E-value=1.1e+02 Score=22.41 Aligned_cols=50 Identities=16% Similarity=0.056 Sum_probs=28.2
Q ss_pred HHHHcCCCcEEEEEcCCCCC-ChhhHHHHhhhccCCCCCCcEEEEeCCChH
Q 028606 48 LKKQFSGKKFLLFLDDLWNV-NYDLWSYLCRPLVESCAPGSKDIITARFTD 97 (206)
Q Consensus 48 l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~~~~gs~IivTTr~~~ 97 (206)
+-+.|....=+++||.--.. +...-+.+...+......|..||++|.+.+
T Consensus 138 laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~ 188 (190)
T TIGR01166 138 IAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVD 188 (190)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeeccc
Confidence 44445566678999976432 344444444444311224677888887654
No 238
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=23.15 E-value=2.5e+02 Score=20.90 Aligned_cols=55 Identities=11% Similarity=0.033 Sum_probs=29.9
Q ss_pred HHHHcCCCcEEEEEcCCCCC-ChhhHHHHhhhccCCCCCCcEEEEeCCChHHHHhh
Q 028606 48 LKKQFSGKKFLLFLDDLWNV-NYDLWSYLCRPLVESCAPGSKDIITARFTDVATMV 102 (206)
Q Consensus 48 l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~~~~gs~IivTTr~~~v~~~~ 102 (206)
+-+.+..+.=+++||..-.. +...-+.+...+......|..||++|.+...+..+
T Consensus 147 laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~ 202 (218)
T cd03266 147 IARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERL 202 (218)
T ss_pred HHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh
Confidence 34445556668899986432 33333333333331112366788888887755443
No 239
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=22.78 E-value=2.4e+02 Score=20.84 Aligned_cols=55 Identities=18% Similarity=0.163 Sum_probs=32.1
Q ss_pred HHHHcCCCcEEEEEcCCCCC-ChhhHHHHhhhccCCCCCCcEEEEeCCChHHHHhh
Q 028606 48 LKKQFSGKKFLLFLDDLWNV-NYDLWSYLCRPLVESCAPGSKDIITARFTDVATMV 102 (206)
Q Consensus 48 l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~~~~gs~IivTTr~~~v~~~~ 102 (206)
+-..|..+.=+++||.--.. +...-+.+...+......|..||++|.+.+.+..+
T Consensus 137 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~ 192 (205)
T cd03226 137 IAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKV 192 (205)
T ss_pred HHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh
Confidence 44445566678999976432 34444444444431113467799999887766543
No 240
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=22.75 E-value=2.8e+02 Score=20.80 Aligned_cols=49 Identities=16% Similarity=0.205 Sum_probs=31.0
Q ss_pred CCCcEEEEEcCCCCC-Chhh----HHHHhhhccCCCCCCcEEEEeCCChHHHHhhCC
Q 028606 53 SGKKFLLFLDDLWNV-NYDL----WSYLCRPLVESCAPGSKDIITARFTDVATMVAT 104 (206)
Q Consensus 53 ~~kr~LlVLDdv~~~-~~~~----~~~l~~~l~~~~~~gs~IivTTr~~~v~~~~~~ 104 (206)
..++-|++||..-.. +..+ ...+...+. ..|..+|++|.+.+++.....
T Consensus 106 ~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~---~~~~~~i~~TH~~~l~~~~~~ 159 (204)
T cd03282 106 ADGDSLVLIDELGRGTSSADGFAISLAILECLI---KKESTVFFATHFRDIAAILGN 159 (204)
T ss_pred cCCCcEEEeccccCCCCHHHHHHHHHHHHHHHH---hcCCEEEEECChHHHHHHhhc
Confidence 356789999997422 2222 122223333 238899999999999887653
No 241
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=22.65 E-value=2.8e+02 Score=21.20 Aligned_cols=53 Identities=9% Similarity=0.023 Sum_probs=29.8
Q ss_pred HHHHcCCCcEEEEEcCCCCC-ChhhHHHHhhhccCCCCCCcEEEEeCCChHHHHh
Q 028606 48 LKKQFSGKKFLLFLDDLWNV-NYDLWSYLCRPLVESCAPGSKDIITARFTDVATM 101 (206)
Q Consensus 48 l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~~~~gs~IivTTr~~~v~~~ 101 (206)
+-..+..+.=+++||+.-.. +...-+.+...+. ....+..||++|.+.+.+..
T Consensus 157 la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~-~~~~~~tili~sH~~~~~~~ 210 (250)
T PRK14262 157 IARALAVEPEVILLDEPTSALDPIATQRIEKLLE-ELSENYTIVIVTHNIGQAIR 210 (250)
T ss_pred HHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHH-HHhcCcEEEEEeCCHHHHHH
Confidence 34445556668889986432 3333344444443 22235678888888775443
No 242
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=22.62 E-value=2.3e+02 Score=20.99 Aligned_cols=55 Identities=15% Similarity=0.091 Sum_probs=31.6
Q ss_pred HHHHcCCCcEEEEEcCCCCC-ChhhHHHHhhhccCCCCCCcEEEEeCCChHHHHhh
Q 028606 48 LKKQFSGKKFLLFLDDLWNV-NYDLWSYLCRPLVESCAPGSKDIITARFTDVATMV 102 (206)
Q Consensus 48 l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~~~~gs~IivTTr~~~v~~~~ 102 (206)
+-..|..+.=+++||..-.. +...-+.+...+......|..||++|.+.+.+..+
T Consensus 143 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~ 198 (213)
T cd03235 143 LARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEY 198 (213)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence 44445566677888976432 34444444444431112477788888887766543
No 243
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=22.60 E-value=1.5e+02 Score=21.84 Aligned_cols=55 Identities=16% Similarity=0.082 Sum_probs=32.0
Q ss_pred HHHHHcCCCcEEEEEcCCCCC-ChhhHHHHhhhccCCCCCCcEEEEeCCChHHHHh
Q 028606 47 KLKKQFSGKKFLLFLDDLWNV-NYDLWSYLCRPLVESCAPGSKDIITARFTDVATM 101 (206)
Q Consensus 47 ~l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~~~~gs~IivTTr~~~v~~~ 101 (206)
.+-+.+..+.=+++||..-.. +...-+.+...+......|..||++|++..-...
T Consensus 137 ~laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~ 192 (200)
T PRK13540 137 ALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNK 192 (200)
T ss_pred HHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhccc
Confidence 344455566678889986432 3333444444444112347789999988766544
No 244
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=22.58 E-value=2.4e+02 Score=21.70 Aligned_cols=56 Identities=16% Similarity=0.096 Sum_probs=33.2
Q ss_pred HHHHHcCCCcEEEEEcCCCCC-ChhhHHHHhhhccCCCCCCcEEEEeCCChHHHHhh
Q 028606 47 KLKKQFSGKKFLLFLDDLWNV-NYDLWSYLCRPLVESCAPGSKDIITARFTDVATMV 102 (206)
Q Consensus 47 ~l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~~~~gs~IivTTr~~~v~~~~ 102 (206)
.+-..+..+.=+++||..-.. +....+.+...+..-...|..||++|.+.+.....
T Consensus 147 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~ 203 (256)
T TIGR03873 147 HVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASY 203 (256)
T ss_pred HHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHh
Confidence 344455666778899976432 44444555544431112367789999887766543
No 245
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=22.54 E-value=2.5e+02 Score=21.53 Aligned_cols=53 Identities=9% Similarity=0.003 Sum_probs=30.6
Q ss_pred HHHHcCCCcEEEEEcCCCCC-ChhhHHHHhhhccCCCCCCcEEEEeCCChHHHHh
Q 028606 48 LKKQFSGKKFLLFLDDLWNV-NYDLWSYLCRPLVESCAPGSKDIITARFTDVATM 101 (206)
Q Consensus 48 l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~~~~gs~IivTTr~~~v~~~ 101 (206)
+-..|..+.=+++||..-.. +...-+.+...+. ....|..||++|.+.+....
T Consensus 160 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~-~~~~~~tvii~tH~~~~~~~ 213 (253)
T PRK14242 160 IARALAVEPEVLLMDEPASALDPIATQKIEELIH-ELKARYTIIIVTHNMQQAAR 213 (253)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHH-HHhcCCeEEEEEecHHHHHH
Confidence 44445556678899976432 3444444444444 22235678888888765543
No 246
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=22.40 E-value=2.5e+02 Score=20.73 Aligned_cols=54 Identities=7% Similarity=0.119 Sum_probs=30.7
Q ss_pred HHHHcCCCcEEEEEcCCCCC-ChhhHHHHhhhccCCCCCCcEEEEeCCChHHHHh
Q 028606 48 LKKQFSGKKFLLFLDDLWNV-NYDLWSYLCRPLVESCAPGSKDIITARFTDVATM 101 (206)
Q Consensus 48 l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~~~~gs~IivTTr~~~v~~~ 101 (206)
+-..+..+.=+++||.--.. +....+.+...+......|..||++|.+.+....
T Consensus 146 la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~ 200 (213)
T cd03262 146 IARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFARE 200 (213)
T ss_pred HHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence 44445556668889976432 4444444444443111246678888888765543
No 247
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=22.36 E-value=2.8e+02 Score=21.43 Aligned_cols=53 Identities=8% Similarity=0.021 Sum_probs=30.0
Q ss_pred HHHHcCCCcEEEEEcCCCCC-ChhhHHHHhhhccCCCCCCcEEEEeCCChHHHHh
Q 028606 48 LKKQFSGKKFLLFLDDLWNV-NYDLWSYLCRPLVESCAPGSKDIITARFTDVATM 101 (206)
Q Consensus 48 l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~~~~gs~IivTTr~~~v~~~ 101 (206)
+-..+..+.=+++||..-.. +......+...+. ....+..||++|.+.+....
T Consensus 166 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~-~~~~~~tiiivtH~~~~~~~ 219 (259)
T PRK14274 166 IARALATNPDVLLMDEPTSALDPVSTRKIEELIL-KLKEKYTIVIVTHNMQQAAR 219 (259)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHH-HHhcCCEEEEEEcCHHHHHH
Confidence 44445566678899976432 3444444444443 22235567778777665443
No 248
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=22.22 E-value=1.8e+02 Score=23.04 Aligned_cols=42 Identities=21% Similarity=0.141 Sum_probs=30.8
Q ss_pred CCcEEEEEcCCCCCChhhHHHHhhhccCCCCCCcEEEEeCCChHHHHh
Q 028606 54 GKKFLLFLDDLWNVNYDLWSYLCRPLVESCAPGSKDIITARFTDVATM 101 (206)
Q Consensus 54 ~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~~gs~IivTTr~~~v~~~ 101 (206)
...=++++|.+- ..+.+..+...+. .|..+|+||.+..+...
T Consensus 193 ~~P~villDE~~--~~e~~~~l~~~~~----~G~~vI~ttH~~~~~~~ 234 (270)
T TIGR02858 193 MSPDVIVVDEIG--REEDVEALLEALH----AGVSIIATAHGRDVEDL 234 (270)
T ss_pred CCCCEEEEeCCC--cHHHHHHHHHHHh----CCCEEEEEechhHHHHH
Confidence 467789999987 6666666655543 47889999998776544
No 249
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=22.07 E-value=2.5e+02 Score=21.30 Aligned_cols=55 Identities=15% Similarity=0.198 Sum_probs=31.0
Q ss_pred HHHHcCCCcEEEEEcCCCCC-ChhhHHHHhhhccCCCCCCcEEEEeCCChHHHHhh
Q 028606 48 LKKQFSGKKFLLFLDDLWNV-NYDLWSYLCRPLVESCAPGSKDIITARFTDVATMV 102 (206)
Q Consensus 48 l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~~~~gs~IivTTr~~~v~~~~ 102 (206)
+-..+....=+++||..-.. +...-+.+...+......|..||++|.+.+.+...
T Consensus 147 la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~ 202 (240)
T PRK09493 147 IARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKV 202 (240)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHh
Confidence 33444455668899976432 34444444444431112367788888887766543
No 250
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=22.04 E-value=2.2e+02 Score=21.56 Aligned_cols=54 Identities=11% Similarity=0.060 Sum_probs=30.5
Q ss_pred HHHHcCCCcEEEEEcCCCCC-ChhhHHHHhhhccCCCCCCcEEEEeCCChHHHHh
Q 028606 48 LKKQFSGKKFLLFLDDLWNV-NYDLWSYLCRPLVESCAPGSKDIITARFTDVATM 101 (206)
Q Consensus 48 l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~~~~gs~IivTTr~~~v~~~ 101 (206)
+-..+..+.=+++||..-.. +....+.+...+..-...|..||++|.+.+....
T Consensus 148 la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~ 202 (237)
T PRK11614 148 IGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALK 202 (237)
T ss_pred HHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHh
Confidence 34445556677889976432 4444444444443111247778899988764433
No 251
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=21.97 E-value=1.5e+02 Score=26.11 Aligned_cols=55 Identities=20% Similarity=0.260 Sum_probs=33.5
Q ss_pred HHHHHcCCCcEEEEEcCCCCC--ChhhHHHHhhhccCCCCCCcEEEEeCCChHHHHhh
Q 028606 47 KLKKQFSGKKFLLFLDDLWNV--NYDLWSYLCRPLVESCAPGSKDIITARFTDVATMV 102 (206)
Q Consensus 47 ~l~~~L~~kr~LlVLDdv~~~--~~~~~~~l~~~l~~~~~~gs~IivTTr~~~v~~~~ 102 (206)
-+-+.|-+..+|+|||.-... ...+-. +..++..-...|..+|+.|....+...+
T Consensus 482 aLARAlYG~P~lvVLDEPNsNLD~~GE~A-L~~Ai~~~k~rG~~vvviaHRPs~L~~~ 538 (580)
T COG4618 482 ALARALYGDPFLVVLDEPNSNLDSEGEAA-LAAAILAAKARGGTVVVIAHRPSALASV 538 (580)
T ss_pred HHHHHHcCCCcEEEecCCCCCcchhHHHH-HHHHHHHHHHcCCEEEEEecCHHHHhhc
Confidence 466778899999999964310 222211 2222221345678888888888877665
No 252
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=21.91 E-value=1.5e+02 Score=23.42 Aligned_cols=47 Identities=13% Similarity=0.114 Sum_probs=30.2
Q ss_pred CcEEEEEcCCCCC-ChhhHHHHhhhccCCCCCCcEEEEeCCChHHHHhh
Q 028606 55 KKFLLFLDDLWNV-NYDLWSYLCRPLVESCAPGSKDIITARFTDVATMV 102 (206)
Q Consensus 55 kr~LlVLDdv~~~-~~~~~~~l~~~l~~~~~~gs~IivTTr~~~v~~~~ 102 (206)
+.=++++|..-.. +......+...+. ....+..||++|++..+...+
T Consensus 192 ~p~vlllDEp~~~Ld~~~~~~l~~~l~-~~~~~~tii~isH~~~~~~~~ 239 (276)
T cd03241 192 AVPTLIFDEIDTGISGEVAQAVGKKLK-ELSRSHQVLCITHLPQVAAMA 239 (276)
T ss_pred CCCEEEEECCccCCCHHHHHHHHHHHH-HHhCCCEEEEEechHHHHHhc
Confidence 6677888986422 4444455555554 333467899999998876543
No 253
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=21.86 E-value=3.2e+02 Score=19.88 Aligned_cols=57 Identities=11% Similarity=0.152 Sum_probs=33.7
Q ss_pred HHHHHHHcCC--CcEEEEEcCCCCC-ChhhH----HHHhhhccCCCCCCcEEEEeCCChHHHHhhC
Q 028606 45 QGKLKKQFSG--KKFLLFLDDLWNV-NYDLW----SYLCRPLVESCAPGSKDIITARFTDVATMVA 103 (206)
Q Consensus 45 ~~~l~~~L~~--kr~LlVLDdv~~~-~~~~~----~~l~~~l~~~~~~gs~IivTTr~~~v~~~~~ 103 (206)
...+...+.. ++-|+++|..-.. +...- ..+...+. . ..|+.+|++|.+.++...+.
T Consensus 66 ~~~l~~~l~~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~-~-~~~~~iii~TH~~~l~~~~~ 129 (185)
T smart00534 66 MKETANILKNATENSLVLLDELGRGTSTYDGVAIAAAVLEYLL-E-KIGALTLFATHYHELTKLAD 129 (185)
T ss_pred HHHHHHHHHhCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHH-h-cCCCeEEEEecHHHHHHHhh
Confidence 3445555554 7889999987532 22211 22222222 1 23778999999988877653
No 254
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=21.78 E-value=2.5e+02 Score=21.98 Aligned_cols=54 Identities=7% Similarity=-0.037 Sum_probs=30.8
Q ss_pred HHHHcCCCcEEEEEcCCCCC-ChhhHHHHhhhccCCCCCCcEEEEeCCChHHHHhh
Q 028606 48 LKKQFSGKKFLLFLDDLWNV-NYDLWSYLCRPLVESCAPGSKDIITARFTDVATMV 102 (206)
Q Consensus 48 l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~~~~gs~IivTTr~~~v~~~~ 102 (206)
+-..|..+.=+++||..-.. +......+...+. ....+..||++|.+.+.+..+
T Consensus 178 laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~-~~~~~~tiiivsH~~~~i~~~ 232 (271)
T PRK14238 178 IARCLAIEPDVILMDEPTSALDPISTLKVEELVQ-ELKKDYSIIIVTHNMQQAARI 232 (271)
T ss_pred HHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHH-HHHcCCEEEEEEcCHHHHHHh
Confidence 33344445568889976432 4444444544443 222356788888887765543
No 255
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=21.74 E-value=3.7e+02 Score=20.45 Aligned_cols=48 Identities=10% Similarity=0.259 Sum_probs=28.6
Q ss_pred CCCcEEEEEcCCCCC-Chhh-----HHHHhhhccCCCCCCcEEEEeCCChHHHHhhC
Q 028606 53 SGKKFLLFLDDLWNV-NYDL-----WSYLCRPLVESCAPGSKDIITARFTDVATMVA 103 (206)
Q Consensus 53 ~~kr~LlVLDdv~~~-~~~~-----~~~l~~~l~~~~~~gs~IivTTr~~~v~~~~~ 103 (206)
...+-|++||..-.. +..+ |. +...+. . ..|+.+|++|...++...+.
T Consensus 107 ~~~~sLvLLDEp~~gT~~lD~~~~~~~-il~~l~-~-~~~~~vlisTH~~el~~~~~ 160 (222)
T cd03285 107 ATENSLIIIDELGRGTSTYDGFGLAWA-IAEYIA-T-QIKCFCLFATHFHELTALAD 160 (222)
T ss_pred CCCCeEEEEecCcCCCChHHHHHHHHH-HHHHHH-h-cCCCeEEEEechHHHHHHhh
Confidence 356889999998311 1111 22 112332 2 34788999999877776654
No 256
>PRK10869 recombination and repair protein; Provisional
Probab=21.63 E-value=1.4e+02 Score=26.45 Aligned_cols=46 Identities=11% Similarity=-0.002 Sum_probs=30.8
Q ss_pred cEEEEEcCCCCC-ChhhHHHHhhhccCCCCCCcEEEEeCCChHHHHhh
Q 028606 56 KFLLFLDDLWNV-NYDLWSYLCRPLVESCAPGSKDIITARFTDVATMV 102 (206)
Q Consensus 56 r~LlVLDdv~~~-~~~~~~~l~~~l~~~~~~gs~IivTTr~~~v~~~~ 102 (206)
.=++|+|.+... +......+...+. ....+..||++|....++...
T Consensus 453 ~~~li~DEpd~gld~~~~~~v~~~l~-~l~~~~qvi~iTH~~~~~~~a 499 (553)
T PRK10869 453 TPALIFDEVDVGISGPTAAVVGKLLR-QLGESTQVMCVTHLPQVAGCG 499 (553)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHH-HHhcCCEEEEEecCHHHHHhC
Confidence 347889998643 4445555555554 333467799999999988643
No 257
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=21.46 E-value=2.3e+02 Score=21.26 Aligned_cols=55 Identities=11% Similarity=0.072 Sum_probs=31.9
Q ss_pred HHHHcCCCcEEEEEcCCCCC-ChhhHHHHhhhccCCC-CCCcEEEEeCCChHHHHhh
Q 028606 48 LKKQFSGKKFLLFLDDLWNV-NYDLWSYLCRPLVESC-APGSKDIITARFTDVATMV 102 (206)
Q Consensus 48 l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~~-~~gs~IivTTr~~~v~~~~ 102 (206)
+-+.|..+.=+++||.--.. +...-+.+...+.... ..|..||++|.+.+.+...
T Consensus 156 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~ 212 (228)
T cd03257 156 IARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKI 212 (228)
T ss_pred HHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHh
Confidence 34445566678889976432 3444444444443111 2267899999988766543
No 258
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=21.46 E-value=2.9e+02 Score=22.16 Aligned_cols=55 Identities=7% Similarity=-0.003 Sum_probs=31.7
Q ss_pred HHHHHcCCCcEEEEEcCCCCC-ChhhHHHHhhhccCCCCCCcEEEEeCCChHHHHhh
Q 028606 47 KLKKQFSGKKFLLFLDDLWNV-NYDLWSYLCRPLVESCAPGSKDIITARFTDVATMV 102 (206)
Q Consensus 47 ~l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~~~~gs~IivTTr~~~v~~~~ 102 (206)
.+-+.|..+.=+++||+.-.. +...-..+...+. ....+..||++|.+...+..+
T Consensus 210 ~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~-~~~~~~tiiivtH~~~~i~~~ 265 (305)
T PRK14264 210 CIARCLAVDPEVILMDEPASALDPIATSKIEDLIE-ELAEEYTVVVVTHNMQQAARI 265 (305)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHH-HHhcCCEEEEEEcCHHHHHHh
Confidence 344455566778899986432 3444444444443 222235688888888776543
No 259
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=21.46 E-value=2.8e+02 Score=21.65 Aligned_cols=55 Identities=13% Similarity=0.149 Sum_probs=31.6
Q ss_pred HHHHcCCCcEEEEEcCCCCC-ChhhHHHHhhhccCCCCCCcEEEEeCCChHHHHhh
Q 028606 48 LKKQFSGKKFLLFLDDLWNV-NYDLWSYLCRPLVESCAPGSKDIITARFTDVATMV 102 (206)
Q Consensus 48 l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~~~~gs~IivTTr~~~v~~~~ 102 (206)
+-..|..+.=+++||..-.. +....+.+...+......|..||++|.+.+.+..+
T Consensus 153 laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~ 208 (272)
T PRK15056 153 LARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEF 208 (272)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHh
Confidence 44445556668889986532 44444444444431122466789999887655443
No 260
>COG1195 RecF Recombinational DNA repair ATPase (RecF pathway) [DNA replication, recombination, and repair]
Probab=21.38 E-value=1.9e+02 Score=24.16 Aligned_cols=49 Identities=18% Similarity=0.085 Sum_probs=30.2
Q ss_pred HHHHHHcCCCcEEEEEcCCCCCChhhHHHHh--hhccCCCCCCcEEEEeCCChHHH
Q 028606 46 GKLKKQFSGKKFLLFLDDLWNVNYDLWSYLC--RPLVESCAPGSKDIITARFTDVA 99 (206)
Q Consensus 46 ~~l~~~L~~kr~LlVLDdv~~~~~~~~~~l~--~~l~~~~~~gs~IivTTr~~~v~ 99 (206)
..+-....+...++.||||-. +++.-+ ..+. -...+..++|||-+.+-.
T Consensus 293 ~~l~~~~~g~~PILLLDDv~s----eLD~~Rr~~Ll~-~~~~~~Q~fvT~t~~~~~ 343 (363)
T COG1195 293 IELLREETGEYPILLLDDVAS----ELDDGRRAALLD-TIELGVQVFVTTTDLEDI 343 (363)
T ss_pred HHHHHHhcCCCCEEEechhhH----hhCHHHHHHHHh-hcccCCeEEEEccCHHHh
Confidence 445556678889999999962 222211 1122 234678899998766543
No 261
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=21.27 E-value=2.3e+02 Score=21.46 Aligned_cols=60 Identities=12% Similarity=0.083 Sum_probs=35.0
Q ss_pred HHHHcCCCcEEEEEcCCCCC-ChhhHHHHhhhccCCC--CCCcEEEEeCCChHHHHhhCCCCceeC
Q 028606 48 LKKQFSGKKFLLFLDDLWNV-NYDLWSYLCRPLVESC--APGSKDIITARFTDVATMVATTSTYPL 110 (206)
Q Consensus 48 l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~~--~~gs~IivTTr~~~v~~~~~~~~~~~l 110 (206)
+-..+..+.=+++||..-.. +...-+.+...+. .. ..|..||++|.+.+.+.. .++++.+
T Consensus 143 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~-~~~~~~~~tiii~sH~~~~~~~--~d~i~~l 205 (236)
T TIGR03864 143 IARALLHRPALLLLDEPTVGLDPASRAAIVAHVR-ALCRDQGLSVLWATHLVDEIEA--DDRLVVL 205 (236)
T ss_pred HHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHH-HHHHhCCCEEEEEecChhhHhh--CCEEEEE
Confidence 44455566677888976432 4444444444443 21 247779999988876653 3444444
No 262
>PRK11081 tRNA guanosine-2'-O-methyltransferase; Provisional
Probab=21.19 E-value=1.9e+02 Score=22.31 Aligned_cols=33 Identities=6% Similarity=0.097 Sum_probs=22.8
Q ss_pred HHHHHHcCC--CcEEEEEcCCCCCChhhHHHHhhhcc
Q 028606 46 GKLKKQFSG--KKFLLFLDDLWNVNYDLWSYLCRPLV 80 (206)
Q Consensus 46 ~~l~~~L~~--kr~LlVLDdv~~~~~~~~~~l~~~l~ 80 (206)
..+.+.|.. ..+.+|||+|. +......|.....
T Consensus 7 ~ri~~~l~~r~~~l~vvLd~V~--~p~NlGAIiRta~ 41 (229)
T PRK11081 7 ARICEMLARRQPDLTVCMEQVH--KPHNVSAIIRTAD 41 (229)
T ss_pred HhHHHHHhcCCCCeEEEEeCCC--CcchHHHHHHHHH
Confidence 345555543 46889999999 8888877665433
No 263
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=21.18 E-value=2.9e+02 Score=21.13 Aligned_cols=52 Identities=10% Similarity=0.091 Sum_probs=28.9
Q ss_pred HHHHcCCCcEEEEEcCCCCC-ChhhHHHHhhhccCCCCCCcEEEEeCCChHHHH
Q 028606 48 LKKQFSGKKFLLFLDDLWNV-NYDLWSYLCRPLVESCAPGSKDIITARFTDVAT 100 (206)
Q Consensus 48 l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~~~~gs~IivTTr~~~v~~ 100 (206)
+-..+..+.=+++||..-.. +....+.+...+. ....+..||++|.+.+...
T Consensus 159 laral~~~p~llllDEPt~~LD~~~~~~l~~~l~-~~~~~~tii~~sH~~~~~~ 211 (252)
T PRK14239 159 IARVLATSPKIILLDEPTSALDPISAGKIEETLL-GLKDDYTMLLVTRSMQQAS 211 (252)
T ss_pred HHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHH-HHhhCCeEEEEECCHHHHH
Confidence 33344556668899986432 3444444444444 2223456888887765443
No 264
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=21.03 E-value=2.5e+02 Score=22.00 Aligned_cols=55 Identities=11% Similarity=0.029 Sum_probs=32.5
Q ss_pred HHHHcCCCcEEEEEcCCCCC-ChhhHHHHhhhccCCCCCCcEEEEeCCChHHHHhh
Q 028606 48 LKKQFSGKKFLLFLDDLWNV-NYDLWSYLCRPLVESCAPGSKDIITARFTDVATMV 102 (206)
Q Consensus 48 l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~~~~gs~IivTTr~~~v~~~~ 102 (206)
+-..|..+.=+++||..-.. +...-+.+...+..-...|..||++|.+.+.+..+
T Consensus 156 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~ 211 (280)
T PRK13649 156 IAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANY 211 (280)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHh
Confidence 44455667778999986432 34444444444431112477899999988766543
No 265
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=20.76 E-value=3.2e+02 Score=21.22 Aligned_cols=53 Identities=9% Similarity=0.018 Sum_probs=30.5
Q ss_pred HHHHcCCCcEEEEEcCCCCC-ChhhHHHHhhhccCCCCCCcEEEEeCCChHHHHh
Q 028606 48 LKKQFSGKKFLLFLDDLWNV-NYDLWSYLCRPLVESCAPGSKDIITARFTDVATM 101 (206)
Q Consensus 48 l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~~~~gs~IivTTr~~~v~~~ 101 (206)
+-+.+..+.=+++||+.-.. +...-+.+...+. ....|..||++|.+.+.+..
T Consensus 160 laral~~~p~llllDEPtsgLD~~~~~~l~~~l~-~~~~~~tii~isH~~~~i~~ 213 (261)
T PRK14263 160 IARAIATEPEVLLLDEPCSALDPIATRRVEELMV-ELKKDYTIALVTHNMQQAIR 213 (261)
T ss_pred HHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHH-HHhcCCeEEEEeCCHHHHHH
Confidence 44455567778889976422 3333334444443 22235678888888775544
No 266
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=20.65 E-value=2.4e+02 Score=21.33 Aligned_cols=55 Identities=11% Similarity=0.130 Sum_probs=31.4
Q ss_pred HHHHcCCCcEEEEEcCCCCC-ChhhHHHHhhhccCC-CCCCcEEEEeCCChHHHHhh
Q 028606 48 LKKQFSGKKFLLFLDDLWNV-NYDLWSYLCRPLVES-CAPGSKDIITARFTDVATMV 102 (206)
Q Consensus 48 l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~-~~~gs~IivTTr~~~v~~~~ 102 (206)
+-..+..+.=+++||.--.. +...-+.+...+... ...|..||++|.+.+.+..+
T Consensus 140 laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~ 196 (232)
T PRK10771 140 LARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARI 196 (232)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHh
Confidence 44445556667888976432 444444444444311 12367789999888866543
No 267
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=20.50 E-value=2.4e+02 Score=21.46 Aligned_cols=57 Identities=11% Similarity=0.063 Sum_probs=34.0
Q ss_pred HHHHHHHcC--CCcEEEEEcCCCCC-ChhhH----HHHhhhccCCCCCCcEEEEeCCChHHHHhhC
Q 028606 45 QGKLKKQFS--GKKFLLFLDDLWNV-NYDLW----SYLCRPLVESCAPGSKDIITARFTDVATMVA 103 (206)
Q Consensus 45 ~~~l~~~L~--~kr~LlVLDdv~~~-~~~~~----~~l~~~l~~~~~~gs~IivTTr~~~v~~~~~ 103 (206)
...+...++ .++-|++||.+-.. +..+= ..+...+. . ..|+.+|++|.+.+++....
T Consensus 97 ~~~~~~il~~~~~~sLvLlDE~~~Gt~~~dg~~la~ail~~L~-~-~~~~~~i~~TH~~el~~~~~ 160 (218)
T cd03286 97 LSETANILRHATPDSLVILDELGRGTSTHDGYAIAHAVLEYLV-K-KVKCLTLFSTHYHSLCDEFH 160 (218)
T ss_pred HHHHHHHHHhCCCCeEEEEecccCCCCchHHHHHHHHHHHHHH-H-hcCCcEEEEeccHHHHHHhh
Confidence 334444443 57889999998432 22221 12122333 1 24889999999999887764
No 268
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=20.44 E-value=2.8e+02 Score=21.50 Aligned_cols=53 Identities=8% Similarity=0.019 Sum_probs=30.3
Q ss_pred HHHHcCCCcEEEEEcCCCCC-ChhhHHHHhhhccCCCCCCcEEEEeCCChHHHHh
Q 028606 48 LKKQFSGKKFLLFLDDLWNV-NYDLWSYLCRPLVESCAPGSKDIITARFTDVATM 101 (206)
Q Consensus 48 l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~~~~gs~IivTTr~~~v~~~ 101 (206)
+-+.+..+.=+++||..-.. +....+.+...+. ....+..||++|.+.+.+..
T Consensus 172 laral~~~p~llllDEPt~gLD~~~~~~l~~~l~-~l~~~~tiiivth~~~~~~~ 225 (265)
T PRK14252 172 IARALATDPEILLFDEPTSALDPIATASIEELIS-DLKNKVTILIVTHNMQQAAR 225 (265)
T ss_pred HHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHH-HHHhCCEEEEEecCHHHHHH
Confidence 44445556667889976432 3444444444444 22235678888887776544
No 269
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=20.41 E-value=3.1e+02 Score=20.97 Aligned_cols=54 Identities=7% Similarity=0.007 Sum_probs=30.0
Q ss_pred HHHHcCCCcEEEEEcCCCCC-ChhhHHHHhhhccCCCCCCcEEEEeCCChHHHHhh
Q 028606 48 LKKQFSGKKFLLFLDDLWNV-NYDLWSYLCRPLVESCAPGSKDIITARFTDVATMV 102 (206)
Q Consensus 48 l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~~~~gs~IivTTr~~~v~~~~ 102 (206)
+-..+..+.=+++||+.-.. +...-..+...+. ....|..||++|.+.+....+
T Consensus 157 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~-~~~~~~tiii~sH~~~~~~~~ 211 (250)
T PRK14240 157 IARALAVEPEVLLMDEPTSALDPISTLKIEELIQ-ELKKDYTIVIVTHNMQQASRI 211 (250)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHH-HHhcCCeEEEEEeCHHHHHhh
Confidence 33445556667889986432 3333333444443 222356788899887755443
No 270
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=20.39 E-value=2.3e+02 Score=21.08 Aligned_cols=53 Identities=9% Similarity=0.135 Sum_probs=30.6
Q ss_pred HHHHcCCCcEEEEEcCCCCC-ChhhHHHHhhhccCCCC-CCcEEEEeCCChHHHH
Q 028606 48 LKKQFSGKKFLLFLDDLWNV-NYDLWSYLCRPLVESCA-PGSKDIITARFTDVAT 100 (206)
Q Consensus 48 l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~~~-~gs~IivTTr~~~v~~ 100 (206)
+-..|....=+++||.--.. +...-+.+...+..... .|..||++|.+.+.+.
T Consensus 151 la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~ 205 (218)
T cd03255 151 IARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAE 205 (218)
T ss_pred HHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHh
Confidence 44455666678889976432 33333444444431112 3677999998877665
No 271
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=20.30 E-value=2.8e+02 Score=19.97 Aligned_cols=54 Identities=17% Similarity=0.060 Sum_probs=30.7
Q ss_pred HHHHcCCCcEEEEEcCCCCC-ChhhHHHHhhhccCCCCC-CcEEEEeCCChHHHHh
Q 028606 48 LKKQFSGKKFLLFLDDLWNV-NYDLWSYLCRPLVESCAP-GSKDIITARFTDVATM 101 (206)
Q Consensus 48 l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~~~~-gs~IivTTr~~~v~~~ 101 (206)
+-..+..+.=+++||.--.. +...-+.+...+...... |..||++|.+.+....
T Consensus 111 la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~ 166 (178)
T cd03229 111 LARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAAR 166 (178)
T ss_pred HHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHH
Confidence 44455566677888976432 344444444444311122 6778888888776654
No 272
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=20.28 E-value=4.7e+02 Score=21.12 Aligned_cols=71 Identities=13% Similarity=0.207 Sum_probs=48.3
Q ss_pred CCcEEEEEcCCCCCChhhHHHHhhhccCCCCCCcEEEEeCC-ChHHHHh-hCCCCceeCCCCCHHHHHHHHHHh
Q 028606 54 GKKFLLFLDDLWNVNYDLWSYLCRPLVESCAPGSKDIITAR-FTDVATM-VATTSTYPLECLSDEDCLRILAEQ 125 (206)
Q Consensus 54 ~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~~gs~IivTTr-~~~v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~ 125 (206)
+++=++|+|++...+......+...+. ....++.+|++|. ...+.+. .....++++.++++++..+.+...
T Consensus 89 ~~~KvvII~~~e~m~~~a~NaLLK~LE-EPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l~~~~l~~~l~~~ 161 (299)
T PRK07132 89 SQKKILIIKNIEKTSNSLLNALLKTIE-EPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEPDQQKILAKLLSK 161 (299)
T ss_pred CCceEEEEecccccCHHHHHHHHHHhh-CCCCCeEEEEEeCChHhChHHHHhCeEEEECCCCCHHHHHHHHHHc
Confidence 466778888886445556667777776 5556777776554 3444433 334568999999999988777653
No 273
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=20.28 E-value=5.8e+02 Score=23.85 Aligned_cols=47 Identities=23% Similarity=0.267 Sum_probs=30.4
Q ss_pred CCcEEEEEcCCCCC-ChhhHHHH----hhhccCCCCCCcEEEEeCCChHHHHhhC
Q 028606 54 GKKFLLFLDDLWNV-NYDLWSYL----CRPLVESCAPGSKDIITARFTDVATMVA 103 (206)
Q Consensus 54 ~kr~LlVLDdv~~~-~~~~~~~l----~~~l~~~~~~gs~IivTTr~~~v~~~~~ 103 (206)
..+-|++||..-.. +..+-..+ ...+. ..|+.+|+||...+++....
T Consensus 406 ~~~sLvLlDE~~~GtDp~eg~ala~aile~l~---~~~~~vIitTH~~el~~~~~ 457 (782)
T PRK00409 406 DKNSLVLFDELGAGTDPDEGAALAISILEYLR---KRGAKIIATTHYKELKALMY 457 (782)
T ss_pred CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHH---HCCCEEEEECChHHHHHHHh
Confidence 46789999998643 33332233 22232 24789999999988876654
No 274
>PRK10865 protein disaggregation chaperone; Provisional
Probab=20.11 E-value=2.9e+02 Score=26.01 Aligned_cols=38 Identities=18% Similarity=0.292 Sum_probs=25.7
Q ss_pred EEEEEcCCCCCChhhHHHHhhhccCCC----C-------CCcEEEEeCCC
Q 028606 57 FLLFLDDLWNVNYDLWSYLCRPLVESC----A-------PGSKDIITARF 95 (206)
Q Consensus 57 ~LlVLDdv~~~~~~~~~~l~~~l~~~~----~-------~gs~IivTTr~ 95 (206)
-+|+||++...+...+..+...+. .+ + ..+.||+||..
T Consensus 672 ~vLllDEieka~~~v~~~Ll~ile-~g~l~d~~gr~vd~rn~iiI~TSN~ 720 (857)
T PRK10865 672 SVILLDEVEKAHPDVFNILLQVLD-DGRLTDGQGRTVDFRNTVVIMTSNL 720 (857)
T ss_pred CeEEEeehhhCCHHHHHHHHHHHh-hCceecCCceEEeecccEEEEeCCc
Confidence 589999997667777777776664 32 1 12337888875
No 275
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=20.10 E-value=2.6e+02 Score=21.90 Aligned_cols=55 Identities=15% Similarity=0.064 Sum_probs=33.0
Q ss_pred HHHHHcCCCcEEEEEcCCCCC-ChhhHHHHhhhccCCCCCCcEEEEeCCChHHHHh
Q 028606 47 KLKKQFSGKKFLLFLDDLWNV-NYDLWSYLCRPLVESCAPGSKDIITARFTDVATM 101 (206)
Q Consensus 47 ~l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~~~~gs~IivTTr~~~v~~~ 101 (206)
.+-..|..+.=+++||..-.. +...-..+...+..-...|..||++|.+.+.+..
T Consensus 148 ~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~ 203 (274)
T PRK13647 148 AIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAE 203 (274)
T ss_pred HHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 455556677778999986532 4444444444443111237778889988776644
No 276
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=20.00 E-value=2.9e+02 Score=21.15 Aligned_cols=53 Identities=11% Similarity=0.023 Sum_probs=30.2
Q ss_pred HHHHcCCCcEEEEEcCCCCC-ChhhHHHHhhhccCCCCCCcEEEEeCCChHHHHh
Q 028606 48 LKKQFSGKKFLLFLDDLWNV-NYDLWSYLCRPLVESCAPGSKDIITARFTDVATM 101 (206)
Q Consensus 48 l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~~~~gs~IivTTr~~~v~~~ 101 (206)
+-+.+..+.=+++||..-.. +....+.+...+. ....+..||++|.+.+....
T Consensus 158 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~-~~~~~~tiiiisH~~~~~~~ 211 (251)
T PRK14251 158 IARALAVRPKVVLLDEPTSALDPISSSEIEETLM-ELKHQYTFIMVTHNLQQAGR 211 (251)
T ss_pred HHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHH-HHHcCCeEEEEECCHHHHHh
Confidence 33444556668889976432 4444444444443 22234668888887776544
Done!