Query 028606
Match_columns 206
No_of_seqs 168 out of 1501
Neff 9.7
Searched_HMMs 29240
Date Mon Mar 25 23:44:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028606.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028606hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 99.9 1.3E-27 4.3E-32 204.6 8.2 184 1-199 180-401 (549)
2 1vt4_I APAF-1 related killer D 99.9 9.2E-23 3.1E-27 181.5 9.5 176 2-199 177-383 (1221)
3 3sfz_A APAF-1, apoptotic pepti 99.8 1.4E-19 4.7E-24 166.8 14.8 181 3-199 176-391 (1249)
4 1z6t_A APAF-1, apoptotic prote 99.7 4.8E-17 1.6E-21 140.1 11.1 180 2-199 175-391 (591)
5 1w5s_A Origin recognition comp 97.8 0.00013 4.6E-09 59.3 10.0 118 8-126 89-228 (412)
6 1fnn_A CDC6P, cell division co 97.0 0.013 4.4E-07 47.0 12.3 117 8-126 76-206 (389)
7 2v1u_A Cell division control p 97.0 0.013 4.5E-07 46.9 12.1 115 8-126 81-214 (387)
8 2qby_B CDC6 homolog 3, cell di 96.9 0.007 2.4E-07 48.6 9.7 115 7-126 83-210 (384)
9 2qby_A CDC6 homolog 1, cell di 96.5 0.0042 1.5E-07 49.7 6.0 117 8-126 79-210 (386)
10 1njg_A DNA polymerase III subu 96.5 0.0082 2.8E-07 44.4 7.2 74 53-127 124-199 (250)
11 2qen_A Walker-type ATPase; unk 96.3 0.014 4.6E-07 46.1 7.9 86 39-126 111-216 (350)
12 2chg_A Replication factor C sm 95.6 0.083 2.8E-06 38.3 8.9 117 9-126 41-174 (226)
13 2fna_A Conserved hypothetical 95.5 0.027 9.3E-07 44.4 6.3 84 40-126 123-222 (357)
14 1sxj_B Activator 1 37 kDa subu 95.2 0.3 1E-05 37.8 11.4 117 9-126 45-179 (323)
15 1iqp_A RFCS; clamp loader, ext 90.6 0.47 1.6E-05 36.8 5.7 73 54-127 109-183 (327)
16 2chq_A Replication factor C sm 89.2 1.2 4E-05 34.3 7.0 72 54-126 101-174 (319)
17 1jr3_A DNA polymerase III subu 88.6 1.3 4.6E-05 34.9 7.2 73 53-126 117-191 (373)
18 2z4s_A Chromosomal replication 87.2 1.2 4.1E-05 36.7 6.1 76 52-127 191-277 (440)
19 3te6_A Regulatory protein SIR3 85.0 12 0.00042 29.3 11.0 116 9-127 84-212 (318)
20 1sxj_E Activator 1 40 kDa subu 83.8 2.3 7.9E-05 33.3 6.1 71 55-126 134-206 (354)
21 1g5t_A COB(I)alamin adenosyltr 81.2 3.2 0.00011 30.2 5.5 53 44-97 108-164 (196)
22 2gno_A DNA polymerase III, gam 78.1 3.4 0.00012 32.1 5.2 71 54-126 81-152 (305)
23 1a5t_A Delta prime, HOLB; zinc 77.8 23 0.00077 27.6 14.0 72 54-126 107-180 (334)
24 3bos_A Putative DNA replicatio 72.7 1.4 4.6E-05 32.3 1.5 72 55-126 104-187 (242)
25 1d2n_A N-ethylmaleimide-sensit 70.8 12 0.0004 28.1 6.5 77 48-124 117-210 (272)
26 1l8q_A Chromosomal replication 68.5 4.9 0.00017 31.1 3.9 71 56-127 99-180 (324)
27 3u61_B DNA polymerase accessor 68.1 13 0.00045 28.6 6.4 99 15-118 57-170 (324)
28 3h4m_A Proteasome-activating n 67.8 18 0.0006 27.1 6.9 77 52-128 107-203 (285)
29 1jbk_A CLPB protein; beta barr 67.0 7.8 0.00027 26.7 4.5 66 53-121 113-193 (195)
30 1jr3_D DNA polymerase III, del 65.3 45 0.0016 25.8 9.5 87 39-126 59-155 (343)
31 3syl_A Protein CBBX; photosynt 64.9 11 0.00039 28.6 5.4 71 55-126 130-217 (309)
32 1sxj_D Activator 1 41 kDa subu 62.2 13 0.00045 28.7 5.4 71 55-126 133-205 (353)
33 1hqc_A RUVB; extended AAA-ATPa 61.4 21 0.00071 27.3 6.3 72 55-127 90-182 (324)
34 2qz4_A Paraplegin; AAA+, SPG7, 59.1 47 0.0016 24.2 7.8 76 51-126 94-190 (262)
35 3ec2_A DNA replication protein 53.2 6.4 0.00022 27.4 1.9 41 55-95 100-142 (180)
36 4aby_A DNA repair protein RECN 51.8 12 0.00042 29.9 3.6 44 57-101 317-361 (415)
37 3pvs_A Replication-associated 51.7 45 0.0015 27.3 7.0 73 53-127 104-179 (447)
38 1sxj_C Activator 1 40 kDa subu 49.6 45 0.0015 25.8 6.5 72 54-126 109-182 (340)
39 2rdm_A Response regulator rece 48.4 41 0.0014 21.2 5.3 107 13-128 11-123 (132)
40 2kjq_A DNAA-related protein; s 47.9 6.5 0.00022 26.8 1.2 40 55-94 83-123 (149)
41 1sxj_A Activator 1 95 kDa subu 46.4 30 0.001 28.8 5.2 71 54-127 147-223 (516)
42 2gkw_B Tumor necrosis factor r 44.0 14 0.00046 16.9 1.5 18 78-96 3-20 (26)
43 3uk6_A RUVB-like 2; hexameric 42.9 44 0.0015 25.9 5.6 66 57-127 191-273 (368)
44 3pxi_A Negative regulator of g 39.5 44 0.0015 29.3 5.4 70 56-126 580-675 (758)
45 3n70_A Transport activator; si 37.8 25 0.00085 23.4 2.9 39 56-95 77-115 (145)
46 3hdv_A Response regulator; PSI 36.7 79 0.0027 19.9 8.7 108 13-128 13-127 (136)
47 2qr3_A Two-component system re 34.1 89 0.003 19.7 6.5 105 13-127 9-125 (140)
48 2bjv_A PSP operon transcriptio 32.7 80 0.0027 23.2 5.3 65 56-122 101-190 (265)
49 2qxy_A Response regulator; reg 32.1 97 0.0033 19.7 5.2 105 13-126 10-119 (142)
50 1e69_A Chromosome segregation 29.1 34 0.0012 26.4 2.7 47 54-101 240-287 (322)
51 3hzh_A Chemotaxis response reg 28.9 1.2E+02 0.0042 19.8 6.3 104 13-124 42-153 (157)
52 1ojl_A Transcriptional regulat 28.8 1.5E+02 0.0051 22.5 6.4 65 57-123 98-187 (304)
53 3f6c_A Positive transcription 28.1 1.1E+02 0.0039 19.0 6.7 108 13-130 7-122 (134)
54 4fcw_A Chaperone protein CLPB; 27.9 1E+02 0.0035 23.1 5.3 26 55-80 119-144 (311)
55 3pfi_A Holliday junction ATP-d 27.1 1.3E+02 0.0045 22.9 5.9 72 54-126 105-197 (338)
56 2c9o_A RUVB-like 1; hexameric 26.9 1.9E+02 0.0065 23.4 7.0 64 58-126 298-379 (456)
57 3co5_A Putative two-component 26.2 40 0.0014 22.3 2.4 39 56-94 76-114 (143)
58 1w1w_A Structural maintenance 25.9 62 0.0021 26.0 3.8 48 54-101 354-402 (430)
59 3auy_A DNA double-strand break 25.9 57 0.002 25.7 3.6 50 50-100 299-350 (371)
60 2qp9_X Vacuolar protein sortin 25.3 2.4E+02 0.0082 21.9 8.9 73 53-127 141-231 (355)
61 3eie_A Vacuolar protein sortin 24.6 2.3E+02 0.0079 21.5 9.1 73 53-127 108-198 (322)
62 1y0n_A Hypothetical UPF0270 pr 24.6 1.2E+02 0.0042 18.3 4.7 28 38-65 33-60 (78)
63 2qkd_A Zinc finger protein ZPR 23.9 53 0.0018 26.6 3.0 47 18-65 317-373 (404)
64 1r6b_X CLPA protein; AAA+, N-t 22.9 1.2E+02 0.0042 26.3 5.4 72 54-126 556-666 (758)
65 1r6b_X CLPA protein; AAA+, N-t 22.8 3.7E+02 0.013 23.3 8.8 79 45-126 267-362 (758)
66 3hdg_A Uncharacterized protein 22.8 1.5E+02 0.005 18.6 7.6 106 13-126 13-123 (137)
67 3cf0_A Transitional endoplasmi 22.2 2.5E+02 0.0086 21.0 7.2 74 53-126 106-199 (301)
68 2zu0_C Probable ATP-dependent 22.2 1.3E+02 0.0043 22.5 4.7 54 48-101 175-229 (267)
69 1qvr_A CLPB protein; coiled co 22.0 2.5E+02 0.0087 24.9 7.3 39 56-95 661-710 (854)
70 4e7p_A Response regulator; DNA 21.6 1.7E+02 0.0057 18.8 5.7 106 13-126 26-138 (150)
71 3m6m_D Sensory/regulatory prot 21.5 1.7E+02 0.0057 18.7 6.4 108 13-126 20-134 (143)
72 3lua_A Response regulator rece 20.8 95 0.0033 19.7 3.4 107 13-128 10-127 (140)
73 4a8j_B Elongator complex prote 20.0 2.9E+02 0.0099 20.9 6.8 50 40-92 79-134 (270)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.94 E-value=1.3e-27 Score=204.62 Aligned_cols=184 Identities=11% Similarity=0.096 Sum_probs=137.4
Q ss_pred CcCCCCeeEEEEeCCCC--CHHHHHHHHHHHhhcCCC-------CCCCCHHHHHHHHHHHcCCC-cEEEEEcCCCCCChh
Q 028606 1 MQDHFDLQASTYVGGDF--DALKVTKSILKSIATDQP-------VDDNDLNLLQGKLKKQFSGK-KFLLFLDDLWNVNYD 70 (206)
Q Consensus 1 v~~~F~~~~wv~vs~~~--~~~~i~~~i~~~l~~~~~-------~~~~~~~~~~~~l~~~L~~k-r~LlVLDdv~~~~~~ 70 (206)
++++|++++||++++.+ ++.+++++|+.++ +... .+..+.+.+...+++.|+++ |||||||||| +..
T Consensus 180 ~~~~F~~~~wv~vs~~~~~~~~~~~~~il~~l-~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~--~~~ 256 (549)
T 2a5y_B 180 IGINYDSIVWLKDSGTAPKSTFDLFTDILLML-KSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVV--QEE 256 (549)
T ss_dssp BTTTBSEEEEEECCCCSTTHHHHHHHHHHHHH-TTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEEC--CHH
T ss_pred HhccCCcEEEEEECCCCCCCHHHHHHHHHHHH-hcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCC--Cch
Confidence 46789999999999986 8999999999999 5431 12335677889999999996 9999999999 766
Q ss_pred hHHHHhhhccCCCCCCcEEEEeCCChHHHHhhCC-CCceeCCCCCHHHHHHHHHHhhcCCCCCCCCch------------
Q 028606 71 LWSYLCRPLVESCAPGSKDIITARFTDVATMVAT-TSTYPLECLSDEDCLRILAEQSLGTTDFSNDTE------------ 137 (206)
Q Consensus 71 ~~~~l~~~l~~~~~~gs~IivTTr~~~v~~~~~~-~~~~~l~~L~~~~~~~Lf~~~af~~~~~~~~~~------------ 137 (206)
.+ . ++ ..+||+||||||++.++..++. ..+|++++|+.++||+||.+.+|+........+
T Consensus 257 ~~-~----~~--~~~gs~ilvTTR~~~v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~Gl 329 (549)
T 2a5y_B 257 TI-R----WA--QELRLRCLVTTRDVEISNAASQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGN 329 (549)
T ss_dssp HH-H----HH--HHTTCEEEEEESBGGGGGGCCSCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTC
T ss_pred hh-c----cc--ccCCCEEEEEcCCHHHHHHcCCCCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCC
Confidence 54 1 11 1159999999999999998863 357999999999999999999987643111111
Q ss_pred ----hhhcchhhcCCCCCHHHHHHHHhhchhhcccchHHHHHHHHhcCCCchhHHHHHh-----------Hhhhhhh
Q 028606 138 ----PILGPSDRSSHRMDIEEDNNIEDHQAQERRNWTVSLVIKLLYIIISSRGLFNFYF-----------YFHYVCR 199 (206)
Q Consensus 138 ----~~lg~~l~~~~~~~~~~w~~~~~~~~~~~~~~~i~~~L~~sy~~Lp~~~lk~Cfl-----------Y~~~~~r 199 (206)
.++|+.+ +.+ + ++|...+....+....+.+..+|.+||++||++ +|.||+ ||++||.
T Consensus 330 PLAl~~~g~~l--~~~-~-w~~~~~l~~~l~~~~~~~i~~~l~~Sy~~L~~~-lk~~f~~Ls~~er~l~~~ls~fp~ 401 (549)
T 2a5y_B 330 PATLMMFFKSC--EPK-T-FEKMAQLNNKLESRGLVGVECITPYSYKSLAMA-LQRCVEVLSDEDRSALAFAVVMPP 401 (549)
T ss_dssp HHHHHHHHTTC--CSS-S-HHHHHHHHHHHHHHCSSTTCCCSSSSSSSHHHH-HHHHHHTSCHHHHHHTTGGGSSCT
T ss_pred hHHHHHHHHHh--ccc-h-HHHHHHhHHHhhcccHHHHHHHHhcccccccHH-HHHHHhccchhhhhHhhheeeeCC
Confidence 1455555 222 2 334343433333323457888999999999999 999999 9999986
No 2
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.88 E-value=9.2e-23 Score=181.46 Aligned_cols=176 Identities=13% Similarity=0.136 Sum_probs=129.7
Q ss_pred cCCCCe-eEEEEeCCCCCHHHHHHHHHHHhh--cCCCCC--------CCCHHHHHHHHHHHc---CCCcEEEEEcCCCCC
Q 028606 2 QDHFDL-QASTYVGGDFDALKVTKSILKSIA--TDQPVD--------DNDLNLLQGKLKKQF---SGKKFLLFLDDLWNV 67 (206)
Q Consensus 2 ~~~F~~-~~wv~vs~~~~~~~i~~~i~~~l~--~~~~~~--------~~~~~~~~~~l~~~L---~~kr~LlVLDdv~~~ 67 (206)
+.+|+. ++||++++.++...++..|+..+. ...... ..+.+.+.+.+++.| .+||+||||||||
T Consensus 177 ~~~Fd~gV~WVsVs~~~d~~~IL~~Ll~lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVw-- 254 (1221)
T 1vt4_I 177 QCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ-- 254 (1221)
T ss_dssp HHHHSSCEEEEECCCSSSHHHHHHHHHHHHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCC--
T ss_pred HHhCCCcEEEEEeCCCCCHHHHHHHHHHHHhhcCcccccccccccCCCCCHHHHHHHHHHHHHhhcCCCEEEEEeCcC--
Confidence 457886 899999999999888888877541 111110 013345567777766 7899999999999
Q ss_pred ChhhHHHHhhhccCCCCCCcEEEEeCCChHHHHhhCCCCceeCC------CCCHHHHHHHHHHhhcCCCCCCCCch----
Q 028606 68 NYDLWSYLCRPLVESCAPGSKDIITARFTDVATMVATTSTYPLE------CLSDEDCLRILAEQSLGTTDFSNDTE---- 137 (206)
Q Consensus 68 ~~~~~~~l~~~l~~~~~~gs~IivTTr~~~v~~~~~~~~~~~l~------~L~~~~~~~Lf~~~af~~~~~~~~~~---- 137 (206)
+...|+.+ + +||+||||||++.++..+.....|.++ +|+.++||+||.+.. +.. ....+.
T Consensus 255 d~eqLe~f----~----pGSRILVTTRd~~Va~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~-g~~-~eeL~~eICg 324 (1221)
T 1vt4_I 255 NAKAWNAF----N----LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL-DCR-PQDLPREVLT 324 (1221)
T ss_dssp CHHHHHHH----H----SSCCEEEECSCSHHHHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHH-CCC-TTTHHHHHCC
T ss_pred hHHHHHhh----C----CCeEEEEeccChHHHHhcCCCeEEEecCccccCCcCHHHHHHHHHHHc-CCC-HHHHHHHHhC
Confidence 88888764 2 499999999999999765444467777 999999999999984 432 111122
Q ss_pred ------hhhcchhhcCCCCCHHHHHHHHhhchhhcccchHHHHHHHHhcCCCchhH-HHHHhHhhhhhh
Q 028606 138 ------PILGPSDRSSHRMDIEEDNNIEDHQAQERRNWTVSLVIKLLYIIISSRGL-FNFYFYFHYVCR 199 (206)
Q Consensus 138 ------~~lg~~l~~~~~~~~~~w~~~~~~~~~~~~~~~i~~~L~~sy~~Lp~~~l-k~CflY~~~~~r 199 (206)
.++|+.|..+. .+.++|... ....+..+|.+||+.||++ . |.||+|+++||.
T Consensus 325 GLPLALkLaGs~Lr~k~-~s~eeW~~~--------~~~~I~aaLelSYd~Lp~e-elK~cFL~LAIFPe 383 (1221)
T 1vt4_I 325 TNPRRLSIIAESIRDGL-ATWDNWKHV--------NCDKLTTIIESSLNVLEPA-EYRKMFDRLSVFPP 383 (1221)
T ss_dssp CCHHHHHHHHHHHHHSC-SSHHHHHHC--------SCHHHHHHHHHHHHHSCTT-HHHHHHHHTTSSCT
T ss_pred CCHHHHHHHHHHHhCCC-CCHHHHhcC--------ChhHHHHHHHHHHHhCCHH-HHHHHHHHHhCCCC
Confidence 25566664442 356788653 2368999999999999999 8 999999999985
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.82 E-value=1.4e-19 Score=166.77 Aligned_cols=181 Identities=13% Similarity=0.137 Sum_probs=132.2
Q ss_pred CCC-CeeEEEEeCCCCC--HHHHHHHHHHHhhcCCC----CCCCCHHHHHHHHHHHcCCC--cEEEEEcCCCCCChhhHH
Q 028606 3 DHF-DLQASTYVGGDFD--ALKVTKSILKSIATDQP----VDDNDLNLLQGKLKKQFSGK--KFLLFLDDLWNVNYDLWS 73 (206)
Q Consensus 3 ~~F-~~~~wv~vs~~~~--~~~i~~~i~~~l~~~~~----~~~~~~~~~~~~l~~~L~~k--r~LlVLDdv~~~~~~~~~ 73 (206)
.+| +.++||++++..+ ....++.++..+ .... ....+.+.+.+.++..|.++ |+|||||||| +...|+
T Consensus 176 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~--~~~~~~ 252 (1249)
T 3sfz_A 176 GCFSGGVHWVSIGKQDKSGLLMKLQNLCMRL-DQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVW--DPWVLK 252 (1249)
T ss_dssp TTSTTCEEEEECCSCCHHHHHHHHHHHHHHH-TTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCC--CHHHHT
T ss_pred hhCCCeEEEEEECCcCchHHHHHHHHHHHHh-hhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCC--CHHHHH
Confidence 345 5677999999654 455577777777 4322 23457788999999999887 9999999999 776654
Q ss_pred HHhhhccCCCCCCcEEEEeCCChHHHHh-hCCCCceeCCC-CCHHHHHHHHHHhhcCCCCCCCCc-h-------------
Q 028606 74 YLCRPLVESCAPGSKDIITARFTDVATM-VATTSTYPLEC-LSDEDCLRILAEQSLGTTDFSNDT-E------------- 137 (206)
Q Consensus 74 ~l~~~l~~~~~~gs~IivTTr~~~v~~~-~~~~~~~~l~~-L~~~~~~~Lf~~~af~~~~~~~~~-~------------- 137 (206)
. ..+||+||+|||++.++.. ++..+.+.+.+ |+++++++||...++......... .
T Consensus 253 ~--------~~~~~~ilvTtR~~~~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~~~~~~~~~~i~~~~~glPLal 324 (1249)
T 3sfz_A 253 A--------FDNQCQILLTTRDKSVTDSVMGPKHVVPVESGLGREKGLEILSLFVNMKKEDLPAEAHSIIKECKGSPLVV 324 (1249)
T ss_dssp T--------TCSSCEEEEEESSTTTTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSCSTTCCTHHHHHHHHTTTCHHHH
T ss_pred h--------hcCCCEEEEEcCCHHHHHhhcCCceEEEecCCCCHHHHHHHHHHhhCCChhhCcHHHHHHHHHhCCCHHHH
Confidence 3 2469999999999999855 45567899996 999999999999885432211110 1
Q ss_pred hhhcchhhcCCCCCHHHHHHHHhhchhhccc----------chHHHHHHHHhcCCCchhHHHHHhHhhhhhh
Q 028606 138 PILGPSDRSSHRMDIEEDNNIEDHQAQERRN----------WTVSLVIKLLYIIISSRGLFNFYFYFHYVCR 199 (206)
Q Consensus 138 ~~lg~~l~~~~~~~~~~w~~~~~~~~~~~~~----------~~i~~~L~~sy~~Lp~~~lk~CflY~~~~~r 199 (206)
.++|+.+..+. ..|...++.+...... ..+..+|.+||+.||++ .|.||+||++||.
T Consensus 325 ~~~~~~l~~~~----~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~-~~~~~~~l~~f~~ 391 (1249)
T 3sfz_A 325 SLIGALLRDFP----NRWAYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLRED-IKDYYTDLSILQK 391 (1249)
T ss_dssp HHHHHHHHHSS----SCHHHHHHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTT-THHHHHHGGGSCT
T ss_pred HHHHHHhhcCh----hHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhCCHH-HHHHHHHhCccCC
Confidence 15566664443 3577666666433211 36899999999999999 9999999999975
No 4
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.71 E-value=4.8e-17 Score=140.09 Aligned_cols=180 Identities=13% Similarity=0.148 Sum_probs=123.7
Q ss_pred cCCC-CeeEEEEeCCCCCHHHHHHHH---HHHhhcCC----CCCCCCHHHHHHHHHHHcCC--CcEEEEEcCCCCCChhh
Q 028606 2 QDHF-DLQASTYVGGDFDALKVTKSI---LKSIATDQ----PVDDNDLNLLQGKLKKQFSG--KKFLLFLDDLWNVNYDL 71 (206)
Q Consensus 2 ~~~F-~~~~wv~vs~~~~~~~i~~~i---~~~l~~~~----~~~~~~~~~~~~~l~~~L~~--kr~LlVLDdv~~~~~~~ 71 (206)
+.+| +.++||+++.. +...++..+ ...+ +.. .....+.+.+...+...+.+ +++||||||+| +...
T Consensus 175 ~~~f~~~v~wv~~~~~-~~~~~~~~l~~l~~~l-~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~--~~~~ 250 (591)
T 1z6t_A 175 EGCFPGGVHWVSVGKQ-DKSGLLMKLQNLCTRL-DQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVW--DSWV 250 (591)
T ss_dssp HHHCTTCEEEEEEESC-CHHHHHHHHHHHHHHH-CSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEEC--CHHH
T ss_pred HhhCCCceEEEECCCC-chHHHHHHHHHHHHHh-ccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCC--CHHH
Confidence 3568 57999999876 333444433 4444 321 22345677788888888876 79999999999 6554
Q ss_pred HHHHhhhccCCCCCCcEEEEeCCChHHHHhhCCCCceeC---CCCCHHHHHHHHHHhhcCCCCCCCCc-h----------
Q 028606 72 WSYLCRPLVESCAPGSKDIITARFTDVATMVATTSTYPL---ECLSDEDCLRILAEQSLGTTDFSNDT-E---------- 137 (206)
Q Consensus 72 ~~~l~~~l~~~~~~gs~IivTTr~~~v~~~~~~~~~~~l---~~L~~~~~~~Lf~~~af~~~~~~~~~-~---------- 137 (206)
++ .+ ..|++||+|||+..++..++ ...+.+ ++|+.+++++||...++......... .
T Consensus 251 l~----~l----~~~~~ilvTsR~~~~~~~~~-~~~~~v~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~i~~~~~G~P 321 (591)
T 1z6t_A 251 LK----AF----DSQCQILLTTRDKSVTDSVM-GPKYVVPVESSLGKEKGLEILSLFVNMKKADLPEQAHSIIKECKGSP 321 (591)
T ss_dssp HH----TT----CSSCEEEEEESCGGGGTTCC-SCEEEEECCSSCCHHHHHHHHHHHHTSCGGGSCTHHHHHHHHHTTCH
T ss_pred HH----Hh----cCCCeEEEECCCcHHHHhcC-CCceEeecCCCCCHHHHHHHHHHHhCCCcccccHHHHHHHHHhCCCc
Confidence 43 22 36899999999999887654 234444 58999999999999986422111110 1
Q ss_pred ---hhhcchhhcCCCCCHHHHHHHHhhchhhcc----------cchHHHHHHHHhcCCCchhHHHHHhHhhhhhh
Q 028606 138 ---PILGPSDRSSHRMDIEEDNNIEDHQAQERR----------NWTVSLVIKLLYIIISSRGLFNFYFYFHYVCR 199 (206)
Q Consensus 138 ---~~lg~~l~~~~~~~~~~w~~~~~~~~~~~~----------~~~i~~~L~~sy~~Lp~~~lk~CflY~~~~~r 199 (206)
.++|..+... ...|...++.+..... ..++..++..||+.||++ .|.||+|+++|++
T Consensus 322 Lal~~~a~~l~~~----~~~w~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~-~~~~l~~la~f~~ 391 (591)
T 1z6t_A 322 LVVSLIGALLRDF----PNRWEYYLKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLRED-IKDYYTDLSILQK 391 (591)
T ss_dssp HHHHHHHHHHHHS----TTCHHHHHHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTT-THHHHHHGGGCCT
T ss_pred HHHHHHHHHHhcC----chhHHHHHHHHHHhHHHHhhhccccchHHHHHHHHHHHHhCCHH-HHHHHHHccccCC
Confidence 1445555433 2368777776643321 137899999999999999 9999999999976
No 5
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=97.80 E-value=0.00013 Score=59.35 Aligned_cols=118 Identities=12% Similarity=0.027 Sum_probs=76.3
Q ss_pred eEEEEeCCCCCHHHHHHHHHHHhhcCCCC-CCCCHHHHHHHHHHHcC--CCcEEEEEcCCCCC------ChhhHHHHhhh
Q 028606 8 QASTYVGGDFDALKVTKSILKSIATDQPV-DDNDLNLLQGKLKKQFS--GKKFLLFLDDLWNV------NYDLWSYLCRP 78 (206)
Q Consensus 8 ~~wv~vs~~~~~~~i~~~i~~~l~~~~~~-~~~~~~~~~~~l~~~L~--~kr~LlVLDdv~~~------~~~~~~~l~~~ 78 (206)
.+|+......+...++..++.++ +...+ ...+...+...+.+.+. +++++|||||++.- +...+..+...
T Consensus 89 ~~~~~~~~~~~~~~~~~~l~~~l-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~ 167 (412)
T 1w5s_A 89 QAYVNAFNAPNLYTILSLIVRQT-GYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRV 167 (412)
T ss_dssp EEEEEGGGCCSHHHHHHHHHHHH-TCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-CCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHH
Confidence 46777667788999999999998 54332 23345666677777765 67999999999831 12344444433
Q ss_pred ccCCC--C--CCcEEEEeCCChHHHHhhC--------C-CCceeCCCCCHHHHHHHHHHhh
Q 028606 79 LVESC--A--PGSKDIITARFTDVATMVA--------T-TSTYPLECLSDEDCLRILAEQS 126 (206)
Q Consensus 79 l~~~~--~--~gs~IivTTr~~~v~~~~~--------~-~~~~~l~~L~~~~~~~Lf~~~a 126 (206)
+.... + .+..+|+||+...+...+. . ...+.+.+++.++.+++|...+
T Consensus 168 ~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~ 228 (412)
T 1w5s_A 168 HEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRA 228 (412)
T ss_dssp HHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHH
T ss_pred HHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHH
Confidence 33011 2 3445888887665432211 1 2238999999999999997654
No 6
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.98 E-value=0.013 Score=47.01 Aligned_cols=117 Identities=13% Similarity=0.033 Sum_probs=79.8
Q ss_pred eEEEEeCCCCCHHHHHHHHHHHhhcCCCC-CCCCHHHHHHHHHHHcC--CCcEEEEEcCCCCCChhhHHHHhhhccCCC-
Q 028606 8 QASTYVGGDFDALKVTKSILKSIATDQPV-DDNDLNLLQGKLKKQFS--GKKFLLFLDDLWNVNYDLWSYLCRPLVESC- 83 (206)
Q Consensus 8 ~~wv~vs~~~~~~~i~~~i~~~l~~~~~~-~~~~~~~~~~~l~~~L~--~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~- 83 (206)
.+++..+...+...+...++..+ +.... ...+.....+.+...+. +++.+||||++...+......+...+. ..
T Consensus 76 ~~~i~~~~~~~~~~~~~~l~~~l-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~-~~~ 153 (389)
T 1fnn_A 76 FVYINGFIYRNFTAIIGEIARSL-NIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQ-EAD 153 (389)
T ss_dssp EEEEETTTCCSHHHHHHHHHHHT-TCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTT-CHH
T ss_pred EEEEeCccCCCHHHHHHHHHHHh-CccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHH-hCC
Confidence 45666677778889999999988 54332 23355666666666664 568899999997444556666655553 21
Q ss_pred C---CCcEEEEeCCChHHHHhhC-------CCCceeCCCCCHHHHHHHHHHhh
Q 028606 84 A---PGSKDIITARFTDVATMVA-------TTSTYPLECLSDEDCLRILAEQS 126 (206)
Q Consensus 84 ~---~gs~IivTTr~~~v~~~~~-------~~~~~~l~~L~~~~~~~Lf~~~a 126 (206)
. .+..||++|+......... ....+.+.+++.++..+++...+
T Consensus 154 ~~~~~~~~iI~~~~~~~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~ 206 (389)
T 1fnn_A 154 KLGAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRA 206 (389)
T ss_dssp HHSSCCEEEEEEESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHH
T ss_pred CCCcCCEEEEEEECCchHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHH
Confidence 1 4678888887765443322 12369999999999999998775
No 7
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.96 E-value=0.013 Score=46.87 Aligned_cols=115 Identities=10% Similarity=0.032 Sum_probs=73.1
Q ss_pred eEEEEeCCCCCHHHHHHHHHHHhhcCCCC-CCCCHHHHHHHHHHHcC--CCcEEEEEcCCCCCChh----hHHHHhhhcc
Q 028606 8 QASTYVGGDFDALKVTKSILKSIATDQPV-DDNDLNLLQGKLKKQFS--GKKFLLFLDDLWNVNYD----LWSYLCRPLV 80 (206)
Q Consensus 8 ~~wv~vs~~~~~~~i~~~i~~~l~~~~~~-~~~~~~~~~~~l~~~L~--~kr~LlVLDdv~~~~~~----~~~~l~~~l~ 80 (206)
.+|+......+...++..++.++ +...+ ...+.......+...+. +++.+||||++. ... .-+.+...+.
T Consensus 81 ~~~i~~~~~~~~~~~~~~l~~~l-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~--~l~~~~~~~~~l~~l~~ 157 (387)
T 2v1u_A 81 PIYVNARHRETPYRVASAIAEAV-GVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEID--FLPKRPGGQDLLYRITR 157 (387)
T ss_dssp EEEEETTTSCSHHHHHHHHHHHH-SCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTT--HHHHSTTHHHHHHHHHH
T ss_pred EEEEECCcCCCHHHHHHHHHHHh-CCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHh--hhcccCCCChHHHhHhh
Confidence 45777777788899999999998 54332 23346666777777773 568999999997 332 1222322221
Q ss_pred --CCC--CCCcEEEEeCCChH--------HHHhhCCCCceeCCCCCHHHHHHHHHHhh
Q 028606 81 --ESC--APGSKDIITARFTD--------VATMVATTSTYPLECLSDEDCLRILAEQS 126 (206)
Q Consensus 81 --~~~--~~gs~IivTTr~~~--------v~~~~~~~~~~~l~~L~~~~~~~Lf~~~a 126 (206)
... ..+..+|.||+... +...++ ...+.+.+++.++...++...+
T Consensus 158 ~~~~~~~~~~~~~I~~t~~~~~~~~l~~~l~~r~~-~~~i~l~~l~~~~~~~il~~~~ 214 (387)
T 2v1u_A 158 INQELGDRVWVSLVGITNSLGFVENLEPRVKSSLG-EVELVFPPYTAPQLRDILETRA 214 (387)
T ss_dssp GGGCC-----CEEEEECSCSTTSSSSCHHHHTTTT-SEECCBCCCCHHHHHHHHHHHH
T ss_pred chhhcCCCceEEEEEEECCCchHhhhCHHHHhcCC-CeEEeeCCCCHHHHHHHHHHHH
Confidence 011 44667888887652 222111 1368999999999999998875
No 8
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.86 E-value=0.007 Score=48.61 Aligned_cols=115 Identities=13% Similarity=0.044 Sum_probs=75.5
Q ss_pred eeEEEEeCCCC-CHHHHHHHHHHHhhcCCC-CCCCCHHHHHHHHHHHcCCCcEEEEEcCCCCCChhh--HHHH-hhhccC
Q 028606 7 LQASTYVGGDF-DALKVTKSILKSIATDQP-VDDNDLNLLQGKLKKQFSGKKFLLFLDDLWNVNYDL--WSYL-CRPLVE 81 (206)
Q Consensus 7 ~~~wv~vs~~~-~~~~i~~~i~~~l~~~~~-~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~~~~--~~~l-~~~l~~ 81 (206)
..+|+..+... +...++..++.++.+... ....+.......+.+.+..++.+|||||++ .... +..+ ...+.
T Consensus 83 ~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~--~l~~~~~~~~~l~~l~- 159 (384)
T 2qby_B 83 KQAYVNCREVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVD--TLVKRRGGDIVLYQLL- 159 (384)
T ss_dssp EEEEEEHHHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTH--HHHHSTTSHHHHHHHH-
T ss_pred eEEEEECccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHH--HhccCCCCceeHHHHh-
Confidence 35677666666 888888999888732221 123344667778888888777799999997 3321 1122 22332
Q ss_pred CCCCCcEEEEeCCChHH--------HHhhCCCCceeCCCCCHHHHHHHHHHhh
Q 028606 82 SCAPGSKDIITARFTDV--------ATMVATTSTYPLECLSDEDCLRILAEQS 126 (206)
Q Consensus 82 ~~~~gs~IivTTr~~~v--------~~~~~~~~~~~l~~L~~~~~~~Lf~~~a 126 (206)
....+..+|+||+.... .... ...+.+++++.++..+++...+
T Consensus 160 ~~~~~~~iI~~t~~~~~~~~l~~~l~sr~--~~~i~l~~l~~~~~~~il~~~~ 210 (384)
T 2qby_B 160 RSDANISVIMISNDINVRDYMEPRVLSSL--GPSVIFKPYDAEQLKFILSKYA 210 (384)
T ss_dssp TSSSCEEEEEECSSTTTTTTSCHHHHHTC--CCEEEECCCCHHHHHHHHHHHH
T ss_pred cCCcceEEEEEECCCchHhhhCHHHHhcC--CCeEEECCCCHHHHHHHHHHHH
Confidence 22267889999986531 1211 2389999999999999999875
No 9
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.51 E-value=0.0042 Score=49.70 Aligned_cols=117 Identities=15% Similarity=0.108 Sum_probs=72.0
Q ss_pred eEEEEeCCCCCHHHHHHHHHHHhhcCCCC-CCCCHHHHHHHHHHHcC--CCcEEEEEcCCCCC----ChhhHHHHhhhcc
Q 028606 8 QASTYVGGDFDALKVTKSILKSIATDQPV-DDNDLNLLQGKLKKQFS--GKKFLLFLDDLWNV----NYDLWSYLCRPLV 80 (206)
Q Consensus 8 ~~wv~vs~~~~~~~i~~~i~~~l~~~~~~-~~~~~~~~~~~l~~~L~--~kr~LlVLDdv~~~----~~~~~~~l~~~l~ 80 (206)
.+|+..+...+...++..++..+ +.... ...+.......+.+.+. +++.+||||+++.- +...+..+...+.
T Consensus 79 ~~~i~~~~~~~~~~~~~~i~~~l-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~ 157 (386)
T 2qby_A 79 HVYINTRQIDTPYRVLADLLESL-DVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINS 157 (386)
T ss_dssp EEEEEHHHHCSHHHHHHHHTTTT-SCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh-CCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchh
Confidence 45666556667777888888777 43322 23345566666666664 45899999998621 1233444444442
Q ss_pred CC-CCCCcEEEEeCCChHHHHhhC-----C--CCceeCCCCCHHHHHHHHHHhh
Q 028606 81 ES-CAPGSKDIITARFTDVATMVA-----T--TSTYPLECLSDEDCLRILAEQS 126 (206)
Q Consensus 81 ~~-~~~gs~IivTTr~~~v~~~~~-----~--~~~~~l~~L~~~~~~~Lf~~~a 126 (206)
. ...+..+|+||+.......+. . ...+.+++++.++..+++...+
T Consensus 158 -~~~~~~~~~I~~~~~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~ 210 (386)
T 2qby_A 158 -EVNKSKISFIGITNDVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRA 210 (386)
T ss_dssp -SCCC--EEEEEEESCGGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHH
T ss_pred -hcCCCeEEEEEEECCCChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHH
Confidence 1 234567788887654322221 1 1378999999999999998764
No 10
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.50 E-value=0.0082 Score=44.44 Aligned_cols=74 Identities=12% Similarity=0.138 Sum_probs=53.6
Q ss_pred CCCcEEEEEcCCCCCChhhHHHHhhhccCCCCCCcEEEEeCCChHH-HH-hhCCCCceeCCCCCHHHHHHHHHHhhc
Q 028606 53 SGKKFLLFLDDLWNVNYDLWSYLCRPLVESCAPGSKDIITARFTDV-AT-MVATTSTYPLECLSDEDCLRILAEQSL 127 (206)
Q Consensus 53 ~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~~gs~IivTTr~~~v-~~-~~~~~~~~~l~~L~~~~~~~Lf~~~af 127 (206)
.+++.+||+||++..+...++.+...+. ....+..+|+||+.... .. .......+.+++++.++..+++...+.
T Consensus 124 ~~~~~vlviDe~~~l~~~~~~~l~~~l~-~~~~~~~~i~~t~~~~~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~ 199 (250)
T 1njg_A 124 RGRFKVYLIDEVHMLSRHSFNALLKTLE-EPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILN 199 (250)
T ss_dssp SSSSEEEEEETGGGSCHHHHHHHHHHHH-SCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHH
T ss_pred cCCceEEEEECcccccHHHHHHHHHHHh-cCCCceEEEEEeCChHhCCHHHHHHhhhccCCCCCHHHHHHHHHHHHH
Confidence 3467999999997445667777877776 55567888888876432 11 112235789999999999999988763
No 11
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=96.32 E-value=0.014 Score=46.08 Aligned_cols=86 Identities=12% Similarity=0.116 Sum_probs=54.9
Q ss_pred CCHHHHHHHHHHHcCC-CcEEEEEcCCCCCC-------hhhHHHHhhhccCCCCCCcEEEEeCCChHHHHhh--------
Q 028606 39 NDLNLLQGKLKKQFSG-KKFLLFLDDLWNVN-------YDLWSYLCRPLVESCAPGSKDIITARFTDVATMV-------- 102 (206)
Q Consensus 39 ~~~~~~~~~l~~~L~~-kr~LlVLDdv~~~~-------~~~~~~l~~~l~~~~~~gs~IivTTr~~~v~~~~-------- 102 (206)
.+..++.+.+.+.... ++++||+||++..+ ...+..+..... ...+.++|+|++.......+
T Consensus 111 ~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~~~~--~~~~~~~il~g~~~~~l~~~l~~~~~~~ 188 (350)
T 2qen_A 111 LSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAYAYD--SLPNLKIILTGSEVGLLHDFLKITDYES 188 (350)
T ss_dssp CCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHHHHH--HCTTEEEEEEESSHHHHHHHHCTTCTTS
T ss_pred chHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHHHHH--hcCCeEEEEECCcHHHHHHHHhhcCCCC
Confidence 3456666666665543 38999999997311 123444444333 22478899998876542221
Q ss_pred ---CC-CCceeCCCCCHHHHHHHHHHhh
Q 028606 103 ---AT-TSTYPLECLSDEDCLRILAEQS 126 (206)
Q Consensus 103 ---~~-~~~~~l~~L~~~~~~~Lf~~~a 126 (206)
+. ...+.+.+|+.+++.+++....
T Consensus 189 ~l~~~~~~~i~l~pl~~~e~~~~l~~~~ 216 (350)
T 2qen_A 189 PLYGRIAGEVLVKPFDKDTSVEFLKRGF 216 (350)
T ss_dssp TTTTCCCEEEECCCCCHHHHHHHHHHHH
T ss_pred ccccCccceeeCCCCCHHHHHHHHHHHH
Confidence 11 2368999999999999998753
No 12
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.60 E-value=0.083 Score=38.33 Aligned_cols=117 Identities=11% Similarity=0.152 Sum_probs=69.4
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhhcC---------CCCCCCCHHHHHHHHHHHc------CCCcEEEEEcCCCCCChhhHH
Q 028606 9 ASTYVGGDFDALKVTKSILKSIATD---------QPVDDNDLNLLQGKLKKQF------SGKKFLLFLDDLWNVNYDLWS 73 (206)
Q Consensus 9 ~wv~vs~~~~~~~i~~~i~~~l~~~---------~~~~~~~~~~~~~~l~~~L------~~kr~LlVLDdv~~~~~~~~~ 73 (206)
+.++-.....-..+.+.+...+... ..............+.... .+++.+||+||+........+
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~ 120 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQA 120 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTCHHHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccChHHHHHHHHHHhcccCCCccCceEEEEeChhhcCHHHHH
Confidence 3333333444555666666554110 1112233344444454443 257899999999744455666
Q ss_pred HHhhhccCCCCCCcEEEEeCCChHH-H-HhhCCCCceeCCCCCHHHHHHHHHHhh
Q 028606 74 YLCRPLVESCAPGSKDIITARFTDV-A-TMVATTSTYPLECLSDEDCLRILAEQS 126 (206)
Q Consensus 74 ~l~~~l~~~~~~gs~IivTTr~~~v-~-~~~~~~~~~~l~~L~~~~~~~Lf~~~a 126 (206)
.+...+. ....+.++|+||+.... . ........+.+.+++.++...++...+
T Consensus 121 ~l~~~l~-~~~~~~~~i~~~~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~ 174 (226)
T 2chg_A 121 ALRRTME-MYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEIC 174 (226)
T ss_dssp HHHHHHH-HTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHH
T ss_pred HHHHHHH-hcCCCCeEEEEeCChhhcCHHHHHhCceeecCCCCHHHHHHHHHHHH
Confidence 6766665 45567888888876531 1 111222378999999999999998876
No 13
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=95.52 E-value=0.027 Score=44.41 Aligned_cols=84 Identities=15% Similarity=0.119 Sum_probs=52.5
Q ss_pred CHHHHHHHHHHHcCCCcEEEEEcCCCCCC----hhhHHHHhhhccCCCCCCcEEEEeCCChHHHHhh-----------CC
Q 028606 40 DLNLLQGKLKKQFSGKKFLLFLDDLWNVN----YDLWSYLCRPLVESCAPGSKDIITARFTDVATMV-----------AT 104 (206)
Q Consensus 40 ~~~~~~~~l~~~L~~kr~LlVLDdv~~~~----~~~~~~l~~~l~~~~~~gs~IivTTr~~~v~~~~-----------~~ 104 (206)
....+.+.+.+.-. ++++|||||++..+ ...+..+..... ...+.++|+|++.......+ +.
T Consensus 123 ~~~~l~~~l~~~~~-~~~vlvlDe~~~~~~~~~~~~~~~l~~~~~--~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r 199 (357)
T 2fna_A 123 SFANLLESFEQASK-DNVIIVLDEAQELVKLRGVNLLPALAYAYD--NLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGR 199 (357)
T ss_dssp CHHHHHHHHHHTCS-SCEEEEEETGGGGGGCTTCCCHHHHHHHHH--HCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTC
T ss_pred hHHHHHHHHHhcCC-CCeEEEEECHHHhhccCchhHHHHHHHHHH--cCCCeEEEEEcCchHHHHHHHhccCCCCccccC
Confidence 44555555554433 49999999997311 122333433332 22477899999987643221 11
Q ss_pred -CCceeCCCCCHHHHHHHHHHhh
Q 028606 105 -TSTYPLECLSDEDCLRILAEQS 126 (206)
Q Consensus 105 -~~~~~l~~L~~~~~~~Lf~~~a 126 (206)
...+.+.+|+.+++.+++....
T Consensus 200 ~~~~i~l~~l~~~e~~~~l~~~~ 222 (357)
T 2fna_A 200 AFSTVELKPFSREEAIEFLRRGF 222 (357)
T ss_dssp CCEEEEECCCCHHHHHHHHHHHH
T ss_pred ccceeecCCCCHHHHHHHHHHHH
Confidence 2468899999999999998754
No 14
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.24 E-value=0.3 Score=37.85 Aligned_cols=117 Identities=14% Similarity=0.158 Sum_probs=69.3
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhhc---------CCCCCCCCHHHHHHHHHHHc-------CCCcEEEEEcCCCCCChhhH
Q 028606 9 ASTYVGGDFDALKVTKSILKSIAT---------DQPVDDNDLNLLQGKLKKQF-------SGKKFLLFLDDLWNVNYDLW 72 (206)
Q Consensus 9 ~wv~vs~~~~~~~i~~~i~~~l~~---------~~~~~~~~~~~~~~~l~~~L-------~~kr~LlVLDdv~~~~~~~~ 72 (206)
+.++-.....-..+.+.+.+.+.. ....+....+.+.+.+.... .+++.++|+||++......+
T Consensus 45 ~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~ 124 (323)
T 1sxj_B 45 MIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAGAQ 124 (323)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSHHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccccChHHHHHHHHHHHhccccCCCCCceEEEEECcccCCHHHH
Confidence 344444444555566666555311 11122223444444444433 45689999999974445556
Q ss_pred HHHhhhccCCCCCCcEEEEeCCChH-HHH-hhCCCCceeCCCCCHHHHHHHHHHhh
Q 028606 73 SYLCRPLVESCAPGSKDIITARFTD-VAT-MVATTSTYPLECLSDEDCLRILAEQS 126 (206)
Q Consensus 73 ~~l~~~l~~~~~~gs~IivTTr~~~-v~~-~~~~~~~~~l~~L~~~~~~~Lf~~~a 126 (206)
+.+...+. ....++++|+||+... +.. .......+.+.+++.++..+++...+
T Consensus 125 ~~L~~~le-~~~~~~~~il~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~ 179 (323)
T 1sxj_B 125 QALRRTME-LYSNSTRFAFACNQSNKIIEPLQSQCAILRYSKLSDEDVLKRLLQII 179 (323)
T ss_dssp HTTHHHHH-HTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHh-ccCCCceEEEEeCChhhchhHHHhhceEEeecCCCHHHHHHHHHHHH
Confidence 66666665 4456788888887543 111 11223479999999999999998765
No 15
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=90.57 E-value=0.47 Score=36.76 Aligned_cols=73 Identities=16% Similarity=0.190 Sum_probs=50.7
Q ss_pred CCcEEEEEcCCCCCChhhHHHHhhhccCCCCCCcEEEEeCCChHH-HHh-hCCCCceeCCCCCHHHHHHHHHHhhc
Q 028606 54 GKKFLLFLDDLWNVNYDLWSYLCRPLVESCAPGSKDIITARFTDV-ATM-VATTSTYPLECLSDEDCLRILAEQSL 127 (206)
Q Consensus 54 ~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~~gs~IivTTr~~~v-~~~-~~~~~~~~l~~L~~~~~~~Lf~~~af 127 (206)
+++.++|+|++...+....+.+...+. ....+.++|+||..... ... ......+.+.+++.++...++...+.
T Consensus 109 ~~~~vliiDe~~~l~~~~~~~L~~~le-~~~~~~~~i~~~~~~~~l~~~l~sr~~~~~~~~l~~~~~~~~l~~~~~ 183 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQDAQQALRRTME-MFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAE 183 (327)
T ss_dssp CSCEEEEEETGGGSCHHHHHHHHHHHH-HTTTTEEEEEEESCGGGSCHHHHHTEEEEECCCCCHHHHHHHHHHHHH
T ss_pred CCCeEEEEeCCCcCCHHHHHHHHHHHH-hcCCCCeEEEEeCCccccCHHHHhhCcEEEecCCCHHHHHHHHHHHHH
Confidence 668899999997545566677776665 44567888888875431 111 11123689999999999999887763
No 16
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=89.21 E-value=1.2 Score=34.31 Aligned_cols=72 Identities=14% Similarity=0.196 Sum_probs=49.9
Q ss_pred CCcEEEEEcCCCCCChhhHHHHhhhccCCCCCCcEEEEeCCChH-HHHh-hCCCCceeCCCCCHHHHHHHHHHhh
Q 028606 54 GKKFLLFLDDLWNVNYDLWSYLCRPLVESCAPGSKDIITARFTD-VATM-VATTSTYPLECLSDEDCLRILAEQS 126 (206)
Q Consensus 54 ~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~~gs~IivTTr~~~-v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~a 126 (206)
+++.++|+|++........+.+...+. ....+.++|+||.... +... ......+.+.+++.++...++...+
T Consensus 101 ~~~~vliiDe~~~l~~~~~~~L~~~le-~~~~~~~~i~~~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~ 174 (319)
T 2chq_A 101 APFKIIFLDEADALTADAQAALRRTME-MYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEIC 174 (319)
T ss_dssp CCCEEEEEETGGGSCHHHHHTTGGGTS-SSSSSEEEEEEESCGGGSCHHHHTTCEEEECCCCCHHHHHHHHHHHH
T ss_pred CCceEEEEeCCCcCCHHHHHHHHHHHH-hcCCCCeEEEEeCChhhcchHHHhhCeEEEecCCCHHHHHHHHHHHH
Confidence 568899999997444555666766666 5556778888876543 1111 1223478999999999999888766
No 17
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=88.63 E-value=1.3 Score=34.88 Aligned_cols=73 Identities=14% Similarity=0.181 Sum_probs=49.7
Q ss_pred CCCcEEEEEcCCCCCChhhHHHHhhhccCCCCCCcEEEEeCCChH-HH-HhhCCCCceeCCCCCHHHHHHHHHHhh
Q 028606 53 SGKKFLLFLDDLWNVNYDLWSYLCRPLVESCAPGSKDIITARFTD-VA-TMVATTSTYPLECLSDEDCLRILAEQS 126 (206)
Q Consensus 53 ~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~~gs~IivTTr~~~-v~-~~~~~~~~~~l~~L~~~~~~~Lf~~~a 126 (206)
.+++.++|+||+..-+....+.+...+. ....+..+|++|.... +. ........+.+.+++.++...++...+
T Consensus 117 ~~~~~vliiDe~~~l~~~~~~~Ll~~le-~~~~~~~~Il~~~~~~~l~~~l~sr~~~i~~~~l~~~~~~~~l~~~~ 191 (373)
T 1jr3_A 117 RGRFKVYLIDEVHMLSRHSFNALLKTLE-EPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRHQLEHIL 191 (373)
T ss_dssp SSSSEEEEEECGGGSCHHHHHHHHHHHH-SCCSSEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHH
T ss_pred cCCeEEEEEECcchhcHHHHHHHHHHHh-cCCCceEEEEEeCChHhCcHHHHhheeEeeCCCCCHHHHHHHHHHHH
Confidence 3567899999997445566777776666 4455677777776433 11 112223578999999999999888665
No 18
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=87.20 E-value=1.2 Score=36.65 Aligned_cols=76 Identities=16% Similarity=0.090 Sum_probs=47.3
Q ss_pred cCCCcEEEEEcCCCCCCh--hhHHHHhhhccCCCCCCcEEEEeCCC---------hHHHHhhCCCCceeCCCCCHHHHHH
Q 028606 52 FSGKKFLLFLDDLWNVNY--DLWSYLCRPLVESCAPGSKDIITARF---------TDVATMVATTSTYPLECLSDEDCLR 120 (206)
Q Consensus 52 L~~kr~LlVLDdv~~~~~--~~~~~l~~~l~~~~~~gs~IivTTr~---------~~v~~~~~~~~~~~l~~L~~~~~~~ 120 (206)
+..+.-+|+|||+..-.. ..-+.+...+......|..||+||.+ ..+...+....++.+++++.++-..
T Consensus 191 ~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~ 270 (440)
T 2z4s_A 191 YRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKS 270 (440)
T ss_dssp HTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHH
T ss_pred hcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHH
Confidence 333667999999963211 22233433332012357788888875 2334444434578999999999999
Q ss_pred HHHHhhc
Q 028606 121 ILAEQSL 127 (206)
Q Consensus 121 Lf~~~af 127 (206)
++...+-
T Consensus 271 iL~~~~~ 277 (440)
T 2z4s_A 271 IARKMLE 277 (440)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988763
No 19
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=85.05 E-value=12 Score=29.27 Aligned_cols=116 Identities=10% Similarity=0.046 Sum_probs=61.2
Q ss_pred EEEEeCCCCCHHHHHHHHHHHhhcCCC-CCCCCHHHHHHHHHHH--cCCCcEEEEEcCCCCC-ChhhHHHHhhhccCCCC
Q 028606 9 ASTYVGGDFDALKVTKSILKSIATDQP-VDDNDLNLLQGKLKKQ--FSGKKFLLFLDDLWNV-NYDLWSYLCRPLVESCA 84 (206)
Q Consensus 9 ~wv~vs~~~~~~~i~~~i~~~l~~~~~-~~~~~~~~~~~~l~~~--L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~~~ 84 (206)
+.|......+...+...|++++ .... ......+.+...+... -.++.++++||.+..- ....+-.+..... ...
T Consensus 84 v~INc~~~~t~~~~~~~I~~~L-~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~~q~~L~~l~~~~~-~~~ 161 (318)
T 3te6_A 84 IHIDALELAGMDALYEKIWFAI-SKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLLSEKILQYFEKWIS-SKN 161 (318)
T ss_dssp EEEETTCCC--HHHHHHHHHHH-SCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSCCTHHHHHHHHHHH-CSS
T ss_pred EEEeccccCCHHHHHHHHHHHh-cCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhhcchHHHHHHhccc-ccC
Confidence 4455555667888999999999 4432 2222333333333332 2456899999998732 1122222221111 111
Q ss_pred CCcEEEEeCCChH-----H----HHhhCCCCceeCCCCCHHHHHHHHHHhhc
Q 028606 85 PGSKDIITARFTD-----V----ATMVATTSTYPLECLSDEDCLRILAEQSL 127 (206)
Q Consensus 85 ~gs~IivTTr~~~-----v----~~~~~~~~~~~l~~L~~~~~~~Lf~~~af 127 (206)
....||.++...+ + ...++ ...+.+.+.+.++-.+++.+++-
T Consensus 162 s~~~vI~i~n~~d~~~~~L~~~v~SR~~-~~~i~F~pYt~~el~~Il~~Rl~ 212 (318)
T 3te6_A 162 SKLSIICVGGHNVTIREQINIMPSLKAH-FTEIKLNKVDKNELQQMIITRLK 212 (318)
T ss_dssp CCEEEEEECCSSCCCHHHHHTCHHHHTT-EEEEECCCCCHHHHHHHHHHHHH
T ss_pred CcEEEEEEecCcccchhhcchhhhccCC-ceEEEeCCCCHHHHHHHHHHHHH
Confidence 2223444454322 1 11221 13688999999999999988873
No 20
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=83.83 E-value=2.3 Score=33.34 Aligned_cols=71 Identities=11% Similarity=0.083 Sum_probs=47.6
Q ss_pred CcEEEEEcCCCCCChhhHHHHhhhccCCCCCCcEEEEeCCChH-HHHh-hCCCCceeCCCCCHHHHHHHHHHhh
Q 028606 55 KKFLLFLDDLWNVNYDLWSYLCRPLVESCAPGSKDIITARFTD-VATM-VATTSTYPLECLSDEDCLRILAEQS 126 (206)
Q Consensus 55 kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~~gs~IivTTr~~~-v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~a 126 (206)
+.-+++||++..-+....+.+...+. ....+..+|++|.+.. +... ......+.+++++.++....+...+
T Consensus 134 ~~~vlilDE~~~L~~~~~~~L~~~le-~~~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~ 206 (354)
T 1sxj_E 134 RYKCVIINEANSLTKDAQAALRRTME-KYSKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVV 206 (354)
T ss_dssp CCEEEEEECTTSSCHHHHHHHHHHHH-HSTTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHH
T ss_pred CCeEEEEeCccccCHHHHHHHHHHHH-hhcCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHH
Confidence 55689999997545555566666655 3345677888877532 2221 1223578999999999999988766
No 21
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=81.16 E-value=3.2 Score=30.20 Aligned_cols=53 Identities=19% Similarity=0.163 Sum_probs=32.9
Q ss_pred HHHHHHHHcCCCcE-EEEEcCCCCC---ChhhHHHHhhhccCCCCCCcEEEEeCCChH
Q 028606 44 LQGKLKKQFSGKKF-LLFLDDLWNV---NYDLWSYLCRPLVESCAPGSKDIITARFTD 97 (206)
Q Consensus 44 ~~~~l~~~L~~kr~-LlVLDdv~~~---~~~~~~~l~~~l~~~~~~gs~IivTTr~~~ 97 (206)
.....++.+...+| |||||++-.. ..-..+.+...+. ....+.-||+|+|+..
T Consensus 108 ~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~-~Rp~~~~vIlTGr~ap 164 (196)
T 1g5t_A 108 VWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALN-ARPGHQTVIITGRGCH 164 (196)
T ss_dssp HHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHH-TSCTTCEEEEECSSCC
T ss_pred HHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHH-hCcCCCEEEEECCCCc
Confidence 44556666766555 9999998310 1223344555555 4445677999999754
No 22
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=78.11 E-value=3.4 Score=32.13 Aligned_cols=71 Identities=6% Similarity=0.016 Sum_probs=51.9
Q ss_pred CCcEEEEEcCCCCCChhhHHHHhhhccCCCCCCcEEEEeCCCh-HHHHhhCCCCceeCCCCCHHHHHHHHHHhh
Q 028606 54 GKKFLLFLDDLWNVNYDLWSYLCRPLVESCAPGSKDIITARFT-DVATMVATTSTYPLECLSDEDCLRILAEQS 126 (206)
Q Consensus 54 ~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~~gs~IivTTr~~-~v~~~~~~~~~~~l~~L~~~~~~~Lf~~~a 126 (206)
+++-++|+|++...+....+.+...+. .....+.+|++|.+. .+...+... .+++.++++++....+.+..
T Consensus 81 ~~~kvviIdead~lt~~a~naLLk~LE-ep~~~t~fIl~t~~~~kl~~tI~SR-~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 81 YTRKYVIVHDCERMTQQAANAFLKALE-EPPEYAVIVLNTRRWHYLLPTIKSR-VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp SSSEEEEETTGGGBCHHHHHHTHHHHH-SCCTTEEEEEEESCGGGSCHHHHTT-SEEEECCCCHHHHHHHHHHH
T ss_pred CCceEEEeccHHHhCHHHHHHHHHHHh-CCCCCeEEEEEECChHhChHHHHce-eEeCCCCCHHHHHHHHHHHh
Confidence 456789999997556666777777776 555677777776544 344444444 89999999999999988776
No 23
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=77.80 E-value=23 Score=27.58 Aligned_cols=72 Identities=10% Similarity=0.032 Sum_probs=49.8
Q ss_pred CCcEEEEEcCCCCCChhhHHHHhhhccCCCCCCcEEEEeCCChH-HHHh-hCCCCceeCCCCCHHHHHHHHHHhh
Q 028606 54 GKKFLLFLDDLWNVNYDLWSYLCRPLVESCAPGSKDIITARFTD-VATM-VATTSTYPLECLSDEDCLRILAEQS 126 (206)
Q Consensus 54 ~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~~gs~IivTTr~~~-v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~a 126 (206)
+++-++|+|++...+....+.+...+. ....+..+|++|.+.+ +... ......+.+.+++.++..+.+....
T Consensus 107 ~~~kvviIdead~l~~~a~naLLk~lE-ep~~~~~~Il~t~~~~~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~ 180 (334)
T 1a5t_A 107 GGAKVVWVTDAALLTDAAANALLKTLE-EPPAETWFFLATREPERLLATLRSRCRLHYLAPPPEQYAVTWLSREV 180 (334)
T ss_dssp SSCEEEEESCGGGBCHHHHHHHHHHHT-SCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHC
T ss_pred CCcEEEEECchhhcCHHHHHHHHHHhc-CCCCCeEEEEEeCChHhCcHHHhhcceeeeCCCCCHHHHHHHHHHhc
Confidence 567889999997545555666777776 5455777777776543 2222 2234578999999999998888764
No 24
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=72.73 E-value=1.4 Score=32.26 Aligned_cols=72 Identities=18% Similarity=0.144 Sum_probs=40.4
Q ss_pred CcEEEEEcCCCCCChhh--HHHHhhhccCCCCCCc-EEEEeCCC---------hHHHHhhCCCCceeCCCCCHHHHHHHH
Q 028606 55 KKFLLFLDDLWNVNYDL--WSYLCRPLVESCAPGS-KDIITARF---------TDVATMVATTSTYPLECLSDEDCLRIL 122 (206)
Q Consensus 55 kr~LlVLDdv~~~~~~~--~~~l~~~l~~~~~~gs-~IivTTr~---------~~v~~~~~~~~~~~l~~L~~~~~~~Lf 122 (206)
+.-+||+||+....... .+.+...+......+. ++|+||+. ..+...+.....+.+.+++.++..+++
T Consensus 104 ~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~~~~~~~~~~~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l 183 (242)
T 3bos_A 104 QFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASPMEAGFVLPDLVSRMHWGLTYQLQPMMDDEKLAAL 183 (242)
T ss_dssp GSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEEEESSCTTTTTCCCHHHHHHHHHSEEEECCCCCGGGHHHHH
T ss_pred CCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEEEcCCCHHHHHHhhhhhhhHhhcCceEEeCCCCHHHHHHHH
Confidence 35689999986322212 2333333220011232 47777663 222222222357899999999999999
Q ss_pred HHhh
Q 028606 123 AEQS 126 (206)
Q Consensus 123 ~~~a 126 (206)
...+
T Consensus 184 ~~~~ 187 (242)
T 3bos_A 184 QRRA 187 (242)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8876
No 25
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=70.79 E-value=12 Score=28.06 Aligned_cols=77 Identities=16% Similarity=0.102 Sum_probs=42.2
Q ss_pred HHHHcCCCcEEEEEcCCCCC----------ChhhHHHHhhhccC--CCCCCcEEEEeCCChHHHHhh---CC-CCceeCC
Q 028606 48 LKKQFSGKKFLLFLDDLWNV----------NYDLWSYLCRPLVE--SCAPGSKDIITARFTDVATMV---AT-TSTYPLE 111 (206)
Q Consensus 48 l~~~L~~kr~LlVLDdv~~~----------~~~~~~~l~~~l~~--~~~~gs~IivTTr~~~v~~~~---~~-~~~~~l~ 111 (206)
+......+..+|+||++..- .....+.+...+.. ....+..||.||...+..... +. ...+.++
T Consensus 117 ~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~~rf~~~i~~p 196 (272)
T 1d2n_A 117 FDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHVP 196 (272)
T ss_dssp HHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCTTTSSEEEECC
T ss_pred HHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhhhcccceEEcCC
Confidence 33334567889999998510 12223334333330 122334577778776654431 11 3467888
Q ss_pred CCCH-HHHHHHHHH
Q 028606 112 CLSD-EDCLRILAE 124 (206)
Q Consensus 112 ~L~~-~~~~~Lf~~ 124 (206)
+++. ++...++..
T Consensus 197 ~l~~r~~i~~i~~~ 210 (272)
T 1d2n_A 197 NIATGEQLLEALEL 210 (272)
T ss_dssp CEEEHHHHHHHHHH
T ss_pred CccHHHHHHHHHHh
Confidence 8887 666666655
No 26
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=68.46 E-value=4.9 Score=31.11 Aligned_cols=71 Identities=13% Similarity=0.053 Sum_probs=42.3
Q ss_pred cEEEEEcCCCCCCh--hhHHHHhhhccCCCCCCcEEEEeCCCh---------HHHHhhCCCCceeCCCCCHHHHHHHHHH
Q 028606 56 KFLLFLDDLWNVNY--DLWSYLCRPLVESCAPGSKDIITARFT---------DVATMVATTSTYPLECLSDEDCLRILAE 124 (206)
Q Consensus 56 r~LlVLDdv~~~~~--~~~~~l~~~l~~~~~~gs~IivTTr~~---------~v~~~~~~~~~~~l~~L~~~~~~~Lf~~ 124 (206)
.-+|++||+..-.. ...+.+...+......|..||+||.+. .+...+....++.+++ +.++-..++..
T Consensus 99 ~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~~ 177 (324)
T 1l8q_A 99 VDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIKE 177 (324)
T ss_dssp CSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSCGGGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHHHH
T ss_pred CCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEecCChHHHHHhhhHhhhcccCceEEEeCC-CHHHHHHHHHH
Confidence 56899999962211 222333333320112456788877532 2333333335689999 99999999988
Q ss_pred hhc
Q 028606 125 QSL 127 (206)
Q Consensus 125 ~af 127 (206)
.+.
T Consensus 178 ~~~ 180 (324)
T 1l8q_A 178 KLK 180 (324)
T ss_dssp HHH
T ss_pred HHH
Confidence 773
No 27
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=68.08 E-value=13 Score=28.56 Aligned_cols=99 Identities=17% Similarity=0.201 Sum_probs=55.2
Q ss_pred CCCCHHHHHHHHHHHhhcCCC----CCCCCHHHHHHHHHHHcC-----CCcEEEEEcCCCCCC-hhhHHHHhhhccCCCC
Q 028606 15 GDFDALKVTKSILKSIATDQP----VDDNDLNLLQGKLKKQFS-----GKKFLLFLDDLWNVN-YDLWSYLCRPLVESCA 84 (206)
Q Consensus 15 ~~~~~~~i~~~i~~~l~~~~~----~~~~~~~~~~~~l~~~L~-----~kr~LlVLDdv~~~~-~~~~~~l~~~l~~~~~ 84 (206)
....-..+.+.+...+ +... ......+.+.+.+.+... +++-++++|++..-. ....+.+...+. ...
T Consensus 57 ~G~GKT~la~~la~~l-~~~~~~i~~~~~~~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~~~~~~~L~~~le-~~~ 134 (324)
T 3u61_B 57 PGTGKTTVAKALCHDV-NADMMFVNGSDCKIDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGLAESQRHLRSFME-AYS 134 (324)
T ss_dssp TTSSHHHHHHHHHHHT-TEEEEEEETTTCCHHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGGHHHHHHHHHHHH-HHG
T ss_pred CCCCHHHHHHHHHHHh-CCCEEEEcccccCHHHHHHHHHHHHhhcccCCCCeEEEEECCcccCcHHHHHHHHHHHH-hCC
Confidence 3345555666666665 3211 112224444444444332 367899999997333 334555555544 333
Q ss_pred CCcEEEEeCCChH-----HHHhhCCCCceeCCCCCHHHH
Q 028606 85 PGSKDIITARFTD-----VATMVATTSTYPLECLSDEDC 118 (206)
Q Consensus 85 ~gs~IivTTr~~~-----v~~~~~~~~~~~l~~L~~~~~ 118 (206)
.+.++|+||.... +...+ ..+.+++++.++-
T Consensus 135 ~~~~iI~~~n~~~~l~~~l~sR~---~~i~~~~~~~~e~ 170 (324)
T 3u61_B 135 SNCSIIITANNIDGIIKPLQSRC---RVITFGQPTDEDK 170 (324)
T ss_dssp GGCEEEEEESSGGGSCTTHHHHS---EEEECCCCCHHHH
T ss_pred CCcEEEEEeCCccccCHHHHhhC---cEEEeCCCCHHHH
Confidence 4677888887543 22222 3688999998774
No 28
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=67.80 E-value=18 Score=27.14 Aligned_cols=77 Identities=12% Similarity=0.056 Sum_probs=44.0
Q ss_pred cCCCcEEEEEcCCCCC-----------Ch---hhHHHHhhhccC-CCCCCcEEEEeCCChHH-----HHhhCCCCceeCC
Q 028606 52 FSGKKFLLFLDDLWNV-----------NY---DLWSYLCRPLVE-SCAPGSKDIITARFTDV-----ATMVATTSTYPLE 111 (206)
Q Consensus 52 L~~kr~LlVLDdv~~~-----------~~---~~~~~l~~~l~~-~~~~gs~IivTTr~~~v-----~~~~~~~~~~~l~ 111 (206)
...+..+|+||++..- +. ..+..+...+.. ....+..||.||...+. .........+.+.
T Consensus 107 ~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~ 186 (285)
T 3h4m_A 107 KEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVP 186 (285)
T ss_dssp HHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECC
T ss_pred HHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEEC
Confidence 3455689999999520 11 112222222210 12346678888875432 1110112368899
Q ss_pred CCCHHHHHHHHHHhhcC
Q 028606 112 CLSDEDCLRILAEQSLG 128 (206)
Q Consensus 112 ~L~~~~~~~Lf~~~af~ 128 (206)
.++.++-.+++...+..
T Consensus 187 ~p~~~~r~~il~~~~~~ 203 (285)
T 3h4m_A 187 APDEKGRLEILKIHTRK 203 (285)
T ss_dssp CCCHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHhc
Confidence 99999999999988743
No 29
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=67.03 E-value=7.8 Score=26.66 Aligned_cols=66 Identities=17% Similarity=0.161 Sum_probs=36.2
Q ss_pred CCCcEEEEEcCCCCCC--------hhhHHHHhhhccCCCCCCcEEEEeCCChHHHHhh-------CCCCceeCCCCCHHH
Q 028606 53 SGKKFLLFLDDLWNVN--------YDLWSYLCRPLVESCAPGSKDIITARFTDVATMV-------ATTSTYPLECLSDED 117 (206)
Q Consensus 53 ~~kr~LlVLDdv~~~~--------~~~~~~l~~~l~~~~~~gs~IivTTr~~~v~~~~-------~~~~~~~l~~L~~~~ 117 (206)
.++..+|||||+..-. ......+...+. . .+..+|.||......... ..-..+.+.+++.++
T Consensus 113 ~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~-~--~~~~~i~~~~~~~~~~~~~~~~~l~~r~~~i~~~~p~~~~ 189 (195)
T 1jbk_A 113 QEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALA-R--GELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVED 189 (195)
T ss_dssp STTTEEEEEETGGGGTT------CCCCHHHHHHHHH-T--TSCCEEEEECHHHHHHHTTTCHHHHTTEEEEECCCCCHHH
T ss_pred cCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhc-c--CCeEEEEeCCHHHHHHHHhcCHHHHHHhceeecCCCCHHH
Confidence 3568899999996321 111333433333 1 244577777655433221 111257888888887
Q ss_pred HHHH
Q 028606 118 CLRI 121 (206)
Q Consensus 118 ~~~L 121 (206)
..++
T Consensus 190 ~~~i 193 (195)
T 1jbk_A 190 TIAI 193 (195)
T ss_dssp HHTT
T ss_pred HHHH
Confidence 6554
No 30
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=65.34 E-value=45 Score=25.76 Aligned_cols=87 Identities=14% Similarity=-0.029 Sum_probs=55.2
Q ss_pred CCHHHHHHHHHHH-cCCCcEEEEEcCCCC-CChhhHHHHhhhccCCCCCCcEEEEeCCC-------hHHHHhhC-CCCce
Q 028606 39 NDLNLLQGKLKKQ-FSGKKFLLFLDDLWN-VNYDLWSYLCRPLVESCAPGSKDIITARF-------TDVATMVA-TTSTY 108 (206)
Q Consensus 39 ~~~~~~~~~l~~~-L~~kr~LlVLDdv~~-~~~~~~~~l~~~l~~~~~~gs~IivTTr~-------~~v~~~~~-~~~~~ 108 (206)
.+..++.+.+... +-+++-++|+|++.. -+...++.+...+. ....++.+|++|.. ..+.+.+. ...++
T Consensus 59 ~~~~~l~~~~~~~plf~~~kvvii~~~~~kl~~~~~~aLl~~le-~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~ 137 (343)
T 1jr3_D 59 TDWNAIFSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTG-LLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQV 137 (343)
T ss_dssp CCHHHHHHHHHHHHHCCSCEEEEEECCSSCCCTTHHHHHHHHHT-TCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEE
T ss_pred CCHHHHHHHhcCcCCccCCeEEEEECCCCCCChHHHHHHHHHHh-cCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEE
Confidence 4555555554432 456677788898853 24567777777776 55567777776543 24554443 34578
Q ss_pred eCCCCCHHHHHHHHHHhh
Q 028606 109 PLECLSDEDCLRILAEQS 126 (206)
Q Consensus 109 ~l~~L~~~~~~~Lf~~~a 126 (206)
...+++.++....+...+
T Consensus 138 ~~~~l~~~~l~~~l~~~~ 155 (343)
T 1jr3_D 138 TCQTPEQAQLPRWVAARA 155 (343)
T ss_dssp EECCCCTTHHHHHHHHHH
T ss_pred EeeCCCHHHHHHHHHHHH
Confidence 888888877776666554
No 31
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=64.94 E-value=11 Score=28.58 Aligned_cols=71 Identities=13% Similarity=0.139 Sum_probs=46.5
Q ss_pred CcEEEEEcCCCCC---------ChhhHHHHhhhccCCCCCCcEEEEeCCChHHHHhh--C------CCCceeCCCCCHHH
Q 028606 55 KKFLLFLDDLWNV---------NYDLWSYLCRPLVESCAPGSKDIITARFTDVATMV--A------TTSTYPLECLSDED 117 (206)
Q Consensus 55 kr~LlVLDdv~~~---------~~~~~~~l~~~l~~~~~~gs~IivTTr~~~v~~~~--~------~~~~~~l~~L~~~~ 117 (206)
+..+|++|++..- +......+...+. ....+..||.||......... . ....+.+.+++.++
T Consensus 130 ~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~-~~~~~~~~i~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~ 208 (309)
T 3syl_A 130 MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVME-NNRDDLVVILAGYADRMENFFQSNPGFRSRIAHHIEFPDYSDEE 208 (309)
T ss_dssp TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHH-HCTTTCEEEEEECHHHHHHHHHHSTTHHHHEEEEEEECCCCHHH
T ss_pred CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHh-cCCCCEEEEEeCChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHH
Confidence 3459999999621 3344556666665 455567888888654322111 1 12578999999999
Q ss_pred HHHHHHHhh
Q 028606 118 CLRILAEQS 126 (206)
Q Consensus 118 ~~~Lf~~~a 126 (206)
-..++...+
T Consensus 209 ~~~il~~~l 217 (309)
T 3syl_A 209 LFEIAGHML 217 (309)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999998776
No 32
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=62.17 E-value=13 Score=28.73 Aligned_cols=71 Identities=14% Similarity=0.173 Sum_probs=45.5
Q ss_pred CcEEEEEcCCCCCChhhHHHHhhhccCCCCCCcEEEEeCCChH-HHHh-hCCCCceeCCCCCHHHHHHHHHHhh
Q 028606 55 KKFLLFLDDLWNVNYDLWSYLCRPLVESCAPGSKDIITARFTD-VATM-VATTSTYPLECLSDEDCLRILAEQS 126 (206)
Q Consensus 55 kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~~gs~IivTTr~~~-v~~~-~~~~~~~~l~~L~~~~~~~Lf~~~a 126 (206)
+.-+|++|++..-.......+...+. ......++|++|.... +... ......+.+.+++.++....+...+
T Consensus 133 ~~~vliiDE~~~l~~~~~~~Ll~~le-~~~~~~~~il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~l~~~~ 205 (353)
T 1sxj_D 133 PYKIIILDEADSMTADAQSALRRTME-TYSGVTRFCLICNYVTRIIDPLASQCSKFRFKALDASNAIDRLRFIS 205 (353)
T ss_dssp SCEEEEETTGGGSCHHHHHHHHHHHH-HTTTTEEEEEEESCGGGSCHHHHHHSEEEECCCCCHHHHHHHHHHHH
T ss_pred CceEEEEECCCccCHHHHHHHHHHHH-hcCCCceEEEEeCchhhCcchhhccCceEEeCCCCHHHHHHHHHHHH
Confidence 45699999986444555566666655 4445667777775433 1111 1112368899999999988888766
No 33
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=61.36 E-value=21 Score=27.25 Aligned_cols=72 Identities=13% Similarity=0.117 Sum_probs=42.9
Q ss_pred CcEEEEEcCCCCCChhhHHHHhhhccCCCC------------------CCcEEEEeCCChH-HHHhh-CC-CCceeCCCC
Q 028606 55 KKFLLFLDDLWNVNYDLWSYLCRPLVESCA------------------PGSKDIITARFTD-VATMV-AT-TSTYPLECL 113 (206)
Q Consensus 55 kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~------------------~gs~IivTTr~~~-v~~~~-~~-~~~~~l~~L 113 (206)
+..+|+||++........+.+...+. ... .+.++|.+|.... +.... .. ...+.+.++
T Consensus 90 ~~~~l~lDEi~~l~~~~~~~L~~~l~-~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~~R~~~~i~l~~~ 168 (324)
T 1hqc_A 90 EGDILFIDEIHRLSRQAEEHLYPAME-DFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGIVEHLEYY 168 (324)
T ss_dssp TTCEEEETTTTSCCHHHHHHHHHHHH-HSEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSCSCSTTTTCSCEEECCCC
T ss_pred CCCEEEEECCcccccchHHHHHHHHH-hhhhHHhccccccccccccCCCCEEEEEeCCCcccCCHHHHhcccEEEecCCC
Confidence 56799999997434444454544332 110 2345666665432 11111 11 247899999
Q ss_pred CHHHHHHHHHHhhc
Q 028606 114 SDEDCLRILAEQSL 127 (206)
Q Consensus 114 ~~~~~~~Lf~~~af 127 (206)
+.++...++...+.
T Consensus 169 ~~~e~~~~l~~~~~ 182 (324)
T 1hqc_A 169 TPEELAQGVMRDAR 182 (324)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999888763
No 34
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=59.07 E-value=47 Score=24.24 Aligned_cols=76 Identities=7% Similarity=0.047 Sum_probs=41.2
Q ss_pred HcCCCcEEEEEcCCCCCC---------------hhhHHHHhhhccC-CCCCCcEEEEeCCChHHH-Hh-hC---CCCcee
Q 028606 51 QFSGKKFLLFLDDLWNVN---------------YDLWSYLCRPLVE-SCAPGSKDIITARFTDVA-TM-VA---TTSTYP 109 (206)
Q Consensus 51 ~L~~kr~LlVLDdv~~~~---------------~~~~~~l~~~l~~-~~~~gs~IivTTr~~~v~-~~-~~---~~~~~~ 109 (206)
.......+|+||++..-. ......+...+.. ....+..||.||...... .. .. ....+.
T Consensus 94 a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~ 173 (262)
T 2qz4_A 94 ARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRPGRLDRHVF 173 (262)
T ss_dssp HHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGGSGGGSTTSCCEEEE
T ss_pred HHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcCHHHhcCCcCCeEEE
Confidence 334557899999997210 0112233332320 122355677777654321 11 11 134677
Q ss_pred CCCCCHHHHHHHHHHhh
Q 028606 110 LECLSDEDCLRILAEQS 126 (206)
Q Consensus 110 l~~L~~~~~~~Lf~~~a 126 (206)
+..++.++-.+++...+
T Consensus 174 i~~p~~~~r~~il~~~~ 190 (262)
T 2qz4_A 174 IDLPTLQERREIFEQHL 190 (262)
T ss_dssp CCSCCHHHHHHHHHHHH
T ss_pred eCCcCHHHHHHHHHHHH
Confidence 88999999999988776
No 35
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=53.20 E-value=6.4 Score=27.43 Aligned_cols=41 Identities=22% Similarity=0.291 Sum_probs=22.2
Q ss_pred CcEEEEEcCCCCCChhhH--HHHhhhccCCCCCCcEEEEeCCC
Q 028606 55 KKFLLFLDDLWNVNYDLW--SYLCRPLVESCAPGSKDIITARF 95 (206)
Q Consensus 55 kr~LlVLDdv~~~~~~~~--~~l~~~l~~~~~~gs~IivTTr~ 95 (206)
+.-+|||||+.......| +.+...+......|..+|+||..
T Consensus 100 ~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~ 142 (180)
T 3ec2_A 100 NSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNY 142 (180)
T ss_dssp TCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCC
T ss_pred CCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 346899999973222233 23333332011257788888863
No 36
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=51.76 E-value=12 Score=29.91 Aligned_cols=44 Identities=9% Similarity=0.029 Sum_probs=30.2
Q ss_pred EEEEEcCCCCC-ChhhHHHHhhhccCCCCCCcEEEEeCCChHHHHh
Q 028606 57 FLLFLDDLWNV-NYDLWSYLCRPLVESCAPGSKDIITARFTDVATM 101 (206)
Q Consensus 57 ~LlVLDdv~~~-~~~~~~~l~~~l~~~~~~gs~IivTTr~~~v~~~ 101 (206)
-+|+||++-.. +...-+.+...+. .-..|..||++|.+.+++..
T Consensus 317 ~~LlLDEpt~~LD~~~~~~l~~~L~-~l~~~~~vi~itH~~~~~~~ 361 (415)
T 4aby_A 317 PSVVFDEVDAGIGGAAAIAVAEQLS-RLADTRQVLVVTHLAQIAAR 361 (415)
T ss_dssp SEEEESSTTTTCCHHHHHHHHHHHH-HHTTTSEEEEECSCHHHHTT
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHH-HHhCCCEEEEEeCcHHHHhh
Confidence 68899998643 4555555555554 32247889999999888754
No 37
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=51.67 E-value=45 Score=27.29 Aligned_cols=73 Identities=18% Similarity=0.252 Sum_probs=42.2
Q ss_pred CCCcEEEEEcCCCCCChhhHHHHhhhccCCCCCCcEEEEeCCChH--H-HHhhCCCCceeCCCCCHHHHHHHHHHhhc
Q 028606 53 SGKKFLLFLDDLWNVNYDLWSYLCRPLVESCAPGSKDIITARFTD--V-ATMVATTSTYPLECLSDEDCLRILAEQSL 127 (206)
Q Consensus 53 ~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~~gs~IivTTr~~~--v-~~~~~~~~~~~l~~L~~~~~~~Lf~~~af 127 (206)
.+++.+|++|++..-+....+.+...+. . +.-.-|..||.+.. + ........++.+++++.++...++...+-
T Consensus 104 ~~~~~iLfIDEI~~l~~~~q~~LL~~le-~-~~v~lI~att~n~~~~l~~aL~sR~~v~~l~~l~~edi~~il~~~l~ 179 (447)
T 3pvs_A 104 AGRRTILFVDEVHRFNKSQQDAFLPHIE-D-GTITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQAME 179 (447)
T ss_dssp TTCCEEEEEETTTCC------CCHHHHH-T-TSCEEEEEESSCGGGSSCHHHHTTEEEEECCCCCHHHHHHHHHHHHH
T ss_pred cCCCcEEEEeChhhhCHHHHHHHHHHHh-c-CceEEEecCCCCcccccCHHHhCceeEEeeCCcCHHHHHHHHHHHHH
Confidence 4678999999997444444555555555 2 22222333555543 1 12222334788999999999999988763
No 38
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=49.64 E-value=45 Score=25.77 Aligned_cols=72 Identities=14% Similarity=0.172 Sum_probs=44.7
Q ss_pred CCcEEEEEcCCCCCChhhHHHHhhhccCCCCCCcEEEEeCCChH-HHH-hhCCCCceeCCCCCHHHHHHHHHHhh
Q 028606 54 GKKFLLFLDDLWNVNYDLWSYLCRPLVESCAPGSKDIITARFTD-VAT-MVATTSTYPLECLSDEDCLRILAEQS 126 (206)
Q Consensus 54 ~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~~gs~IivTTr~~~-v~~-~~~~~~~~~l~~L~~~~~~~Lf~~~a 126 (206)
+.+-++|+|++...+....+.+...+. ......++|++|.... +.. .......+.+.+++.++..+.+...+
T Consensus 109 ~~~~viiiDe~~~l~~~~~~~L~~~le-~~~~~~~~il~~n~~~~i~~~i~sR~~~~~~~~l~~~~~~~~l~~~~ 182 (340)
T 1sxj_C 109 KGFKLIILDEADAMTNAAQNALRRVIE-RYTKNTRFCVLANYAHKLTPALLSQCTRFRFQPLPQEAIERRIANVL 182 (340)
T ss_dssp CSCEEEEETTGGGSCHHHHHHHHHHHH-HTTTTEEEEEEESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHH
T ss_pred CCceEEEEeCCCCCCHHHHHHHHHHHh-cCCCCeEEEEEecCccccchhHHhhceeEeccCCCHHHHHHHHHHHH
Confidence 346789999986434455555665554 3345667777775433 111 11122467889999988888777655
No 39
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=48.39 E-value=41 Score=21.19 Aligned_cols=107 Identities=7% Similarity=-0.092 Sum_probs=53.4
Q ss_pred eCCCCCHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHcCCCcEEEEEcCCCC--C-ChhhHHHHhhhccCCCCCCcEE
Q 028606 13 VGGDFDALKVTKSILKSIATDQPVDDNDLNLLQGKLKKQFSGKKFLLFLDDLWN--V-NYDLWSYLCRPLVESCAPGSKD 89 (206)
Q Consensus 13 vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~--~-~~~~~~~l~~~l~~~~~~gs~I 89 (206)
+..+......++.++... +.......+.++....+.+. .+--++++|---. . ..+....+.... ++..|
T Consensus 11 vdd~~~~~~~l~~~L~~~-g~~v~~~~~~~~a~~~l~~~--~~~dlvi~d~~l~~~~~g~~~~~~l~~~~-----~~~~i 82 (132)
T 2rdm_A 11 ADDEAILLLDFESTLTDA-GFLVTAVSSGAKAIEMLKSG--AAIDGVVTDIRFCQPPDGWQVARVAREID-----PNMPI 82 (132)
T ss_dssp ECSSHHHHHHHHHHHHHT-TCEEEEESSHHHHHHHHHTT--CCCCEEEEESCCSSSSCHHHHHHHHHHHC-----TTCCE
T ss_pred EcCcHHHHHHHHHHHHHc-CCEEEEECCHHHHHHHHHcC--CCCCEEEEeeeCCCCCCHHHHHHHHHhcC-----CCCCE
Confidence 455556667777777765 43333334555555444332 1345677763221 0 122233333322 24455
Q ss_pred EEeCCCh--H-HHHhhCCCCceeCCCCCHHHHHHHHHHhhcC
Q 028606 90 IITARFT--D-VATMVATTSTYPLECLSDEDCLRILAEQSLG 128 (206)
Q Consensus 90 ivTTr~~--~-v~~~~~~~~~~~l~~L~~~~~~~Lf~~~af~ 128 (206)
|+.|... . ....+... .|-.++++.++-...+.+...+
T Consensus 83 i~~s~~~~~~~~~~~~~~~-~~l~kP~~~~~l~~~i~~~~~~ 123 (132)
T 2rdm_A 83 VYISGHAALEWASNGVPDS-IILEKPFTSAQLITAVSQLLNA 123 (132)
T ss_dssp EEEESSCCTTHHHHSCTTC-EEEESSCCHHHHHHHHHHHHHT
T ss_pred EEEeCCccHHHHHhhcCCc-ceEeCCCCHHHHHHHHHHHHhc
Confidence 5554322 2 22222221 3677888888887777766544
No 40
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=47.85 E-value=6.5 Score=26.83 Aligned_cols=40 Identities=10% Similarity=0.040 Sum_probs=19.3
Q ss_pred CcEEEEEcCCCCCChhhHHHHhhhccCCCCCCc-EEEEeCC
Q 028606 55 KKFLLFLDDLWNVNYDLWSYLCRPLVESCAPGS-KDIITAR 94 (206)
Q Consensus 55 kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~~gs-~IivTTr 94 (206)
+.-++||||+.......-+.+...+......|. +||+||+
T Consensus 83 ~~~lLilDE~~~~~~~~~~~l~~li~~~~~~g~~~iiits~ 123 (149)
T 2kjq_A 83 EAEYLAVDQVEKLGNEEQALLFSIFNRFRNSGKGFLLLGSE 123 (149)
T ss_dssp GCSEEEEESTTCCCSHHHHHHHHHHHHHHHHTCCEEEEEES
T ss_pred CCCEEEEeCccccChHHHHHHHHHHHHHHHcCCcEEEEECC
Confidence 345889999863222122222222220012244 4888886
No 41
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=46.43 E-value=30 Score=28.82 Aligned_cols=71 Identities=10% Similarity=0.096 Sum_probs=41.7
Q ss_pred CCcEEEEEcCCCCC---ChhhHHHHhhhccCCCCCCcEEEEeCCChH---HHHhhCCCCceeCCCCCHHHHHHHHHHhhc
Q 028606 54 GKKFLLFLDDLWNV---NYDLWSYLCRPLVESCAPGSKDIITARFTD---VATMVATTSTYPLECLSDEDCLRILAEQSL 127 (206)
Q Consensus 54 ~kr~LlVLDdv~~~---~~~~~~~l~~~l~~~~~~gs~IivTTr~~~---v~~~~~~~~~~~l~~L~~~~~~~Lf~~~af 127 (206)
+++.+|++|++..- ....+..+...+. . .+..||+++.+.. +.........+.+.+++.++..+++...+.
T Consensus 147 ~~~~vliIDEid~l~~~~~~~l~~L~~~l~-~--~~~~iIli~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~ 223 (516)
T 1sxj_A 147 GKHFVIIMDEVDGMSGGDRGGVGQLAQFCR-K--TSTPLILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAI 223 (516)
T ss_dssp TTSEEEEECSGGGCCTTSTTHHHHHHHHHH-H--CSSCEEEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCccchhhHHHHHHHHHHHH-h--cCCCEEEEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHH
Confidence 56789999999632 1222344444443 2 2334555554322 222222234688999999999888877653
No 42
>2gkw_B Tumor necrosis factor receptor superfamily member; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens}
Probab=43.99 E-value=14 Score=16.90 Aligned_cols=18 Identities=22% Similarity=0.512 Sum_probs=13.3
Q ss_pred hccCCCCCCcEEEEeCCCh
Q 028606 78 PLVESCAPGSKDIITARFT 96 (206)
Q Consensus 78 ~l~~~~~~gs~IivTTr~~ 96 (206)
++| .-..|..++|||...
T Consensus 3 PlP-a~eeGaT~lVtTKT~ 20 (26)
T 2gkw_B 3 PVP-ATELGSTELVTTKTA 20 (26)
T ss_pred ccc-ccccCceEEEEeccC
Confidence 355 566799999999743
No 43
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=42.91 E-value=44 Score=25.92 Aligned_cols=66 Identities=21% Similarity=0.239 Sum_probs=42.0
Q ss_pred EEEEEcCCCCCChhhHHHHhhhccCCCCCCcEEEEeCCC-----------------hHHHHhhCCCCceeCCCCCHHHHH
Q 028606 57 FLLFLDDLWNVNYDLWSYLCRPLVESCAPGSKDIITARF-----------------TDVATMVATTSTYPLECLSDEDCL 119 (206)
Q Consensus 57 ~LlVLDdv~~~~~~~~~~l~~~l~~~~~~gs~IivTTr~-----------------~~v~~~~~~~~~~~l~~L~~~~~~ 119 (206)
.+|++|++..-+......+...+. ..... .++++|.. ..+...+ ..+.+.+++.++..
T Consensus 191 ~vl~IDEi~~l~~~~~~~L~~~le-~~~~~-~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~---~~i~~~~~~~~e~~ 265 (368)
T 3uk6_A 191 GVLFIDEVHMLDIESFSFLNRALE-SDMAP-VLIMATNRGITRIRGTSYQSPHGIPIDLLDRL---LIVSTTPYSEKDTK 265 (368)
T ss_dssp CEEEEESGGGSBHHHHHHHHHHTT-CTTCC-EEEEEESCSEEECBTSSCEEETTCCHHHHTTE---EEEEECCCCHHHHH
T ss_pred ceEEEhhccccChHHHHHHHHHhh-CcCCC-eeeeecccceeeeeccCCCCcccCCHHHHhhc---cEEEecCCCHHHHH
Confidence 599999997555566666666665 33333 34434321 2233222 34789999999999
Q ss_pred HHHHHhhc
Q 028606 120 RILAEQSL 127 (206)
Q Consensus 120 ~Lf~~~af 127 (206)
.++...+-
T Consensus 266 ~il~~~~~ 273 (368)
T 3uk6_A 266 QILRIRCE 273 (368)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99987763
No 44
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=39.47 E-value=44 Score=29.30 Aligned_cols=70 Identities=16% Similarity=0.157 Sum_probs=42.4
Q ss_pred cEEEEEcCCCCCChhhHHHHhhhccCC-----------CCCCcEEEEeCCC-----hHH----HHhh-----CC-CCcee
Q 028606 56 KFLLFLDDLWNVNYDLWSYLCRPLVES-----------CAPGSKDIITARF-----TDV----ATMV-----AT-TSTYP 109 (206)
Q Consensus 56 r~LlVLDdv~~~~~~~~~~l~~~l~~~-----------~~~gs~IivTTr~-----~~v----~~~~-----~~-~~~~~ 109 (206)
..+|+||++...+......+...+. . ...+.+||+||.. ..+ ...+ +. +.++.
T Consensus 580 ~~vl~lDEi~~~~~~~~~~Ll~~le-~g~~~~~~g~~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~ 658 (758)
T 3pxi_A 580 YSVVLLDAIEKAHPDVFNILLQVLE-DGRLTDSKGRTVDFRNTILIMTSNVGASEKDKVMGELKRAFRPEFINRIDEIIV 658 (758)
T ss_dssp SSEEEEECGGGSCHHHHHHHHHHHH-HSBCC-----CCBCTTCEEEEEESSSTTCCHHHHHHHHHHSCHHHHTTSSEEEE
T ss_pred CeEEEEeCccccCHHHHHHHHHHhc-cCeEEcCCCCEeccCCeEEEEeCCCChhhHHHHHHHHHhhCCHHHHhhCCeEEe
Confidence 4589999997556666666665554 2 1234588888873 111 1111 11 34788
Q ss_pred CCCCCHHHHHHHHHHhh
Q 028606 110 LECLSDEDCLRILAEQS 126 (206)
Q Consensus 110 l~~L~~~~~~~Lf~~~a 126 (206)
+.+++.++...++....
T Consensus 659 ~~~l~~~~~~~i~~~~l 675 (758)
T 3pxi_A 659 FHSLEKKHLTEIVSLMS 675 (758)
T ss_dssp CC--CHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHH
Confidence 99999999888877654
No 45
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=37.76 E-value=25 Score=23.44 Aligned_cols=39 Identities=10% Similarity=-0.184 Sum_probs=25.2
Q ss_pred cEEEEEcCCCCCChhhHHHHhhhccCCCCCCcEEEEeCCC
Q 028606 56 KFLLFLDDLWNVNYDLWSYLCRPLVESCAPGSKDIITARF 95 (206)
Q Consensus 56 r~LlVLDdv~~~~~~~~~~l~~~l~~~~~~gs~IivTTr~ 95 (206)
.-.|+||++..-....-..+...+. ......+||.||..
T Consensus 77 ~g~l~ldei~~l~~~~q~~Ll~~l~-~~~~~~~~I~~t~~ 115 (145)
T 3n70_A 77 GGTLVLSHPEHLTREQQYHLVQLQS-QEHRPFRLIGIGDT 115 (145)
T ss_dssp TSCEEEECGGGSCHHHHHHHHHHHH-SSSCSSCEEEEESS
T ss_pred CcEEEEcChHHCCHHHHHHHHHHHh-hcCCCEEEEEECCc
Confidence 3578999997545555556665555 44456677777764
No 46
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=36.70 E-value=79 Score=19.93 Aligned_cols=108 Identities=15% Similarity=0.039 Sum_probs=58.6
Q ss_pred eCCCCCHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHcCCC-cEEEEEcCCCCCChhhHHHHhhhccCCC-CCCcEEE
Q 028606 13 VGGDFDALKVTKSILKSIATDQPVDDNDLNLLQGKLKKQFSGK-KFLLFLDDLWNVNYDLWSYLCRPLVESC-APGSKDI 90 (206)
Q Consensus 13 vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~l~~~L~~k-r~LlVLDdv~~~~~~~~~~l~~~l~~~~-~~gs~Ii 90 (206)
+..+......++.++.+. +.+.....+..+....+.+ .. --++++|---. +..-++.+ ..+. .. .....||
T Consensus 13 vdd~~~~~~~l~~~L~~~-g~~v~~~~~~~~a~~~~~~---~~~~dlvi~D~~l~-~~~g~~~~-~~l~-~~~~~~~~ii 85 (136)
T 3hdv_A 13 VDDNAVNREALILYLKSR-GIDAVGADGAEEARLYLHY---QKRIGLMITDLRMQ-PESGLDLI-RTIR-ASERAALSII 85 (136)
T ss_dssp ECSCHHHHHHHHHHHHHT-TCCEEEESSHHHHHHHHHH---CTTEEEEEECSCCS-SSCHHHHH-HHHH-TSTTTTCEEE
T ss_pred ECCCHHHHHHHHHHHHHc-CceEEEeCCHHHHHHHHHh---CCCCcEEEEeccCC-CCCHHHHH-HHHH-hcCCCCCCEE
Confidence 556667778888888876 5443334455554444433 33 34777774321 22223322 2222 22 3456666
Q ss_pred EeCCChHH---HHh--hCCCCceeCCCCCHHHHHHHHHHhhcC
Q 028606 91 ITARFTDV---ATM--VATTSTYPLECLSDEDCLRILAEQSLG 128 (206)
Q Consensus 91 vTTr~~~v---~~~--~~~~~~~~l~~L~~~~~~~Lf~~~af~ 128 (206)
+.|...+. ... .| ..-|-.++++.++-...+.+..-+
T Consensus 86 ~~s~~~~~~~~~~~~~~g-~~~~l~KP~~~~~l~~~i~~~~~~ 127 (136)
T 3hdv_A 86 VVSGDTDVEEAVDVMHLG-VVDFLLKPVDLGKLLELVNKELKI 127 (136)
T ss_dssp EEESSCCHHHHHHHHHTT-CSEEEESSCCHHHHHHHHHHHHC-
T ss_pred EEeCCCChHHHHHHHhCC-cceEEeCCCCHHHHHHHHHHHhcC
Confidence 66654322 222 23 345777889999888888876644
No 47
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=34.09 E-value=89 Score=19.72 Aligned_cols=105 Identities=12% Similarity=0.122 Sum_probs=52.9
Q ss_pred eCCCCCHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHcCCCcEEEEEcCCCC-----C--ChhhHHHHhhhccCCCCC
Q 028606 13 VGGDFDALKVTKSILKSIATDQPVDDNDLNLLQGKLKKQFSGKKFLLFLDDLWN-----V--NYDLWSYLCRPLVESCAP 85 (206)
Q Consensus 13 vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~-----~--~~~~~~~l~~~l~~~~~~ 85 (206)
+..+......++.++... +.......+..++...+.+ ..--++|+|---. + ..+....+.... +
T Consensus 9 vdd~~~~~~~l~~~L~~~-g~~v~~~~~~~~a~~~l~~---~~~dlvi~d~~~~~~~~~~~~g~~~~~~l~~~~-----~ 79 (140)
T 2qr3_A 9 VDDNKGVLTAVQLLLKNH-FSKVITLSSPVSLSTVLRE---ENPEVVLLDMNFTSGINNGNEGLFWLHEIKRQY-----R 79 (140)
T ss_dssp ECSCHHHHHHHHHHHTTT-SSEEEEECCHHHHHHHHHH---SCEEEEEEETTTTC-----CCHHHHHHHHHHHC-----T
T ss_pred EeCCHHHHHHHHHHHHhC-CcEEEEeCCHHHHHHHHHc---CCCCEEEEeCCcCCCCCCCccHHHHHHHHHhhC-----c
Confidence 455555666677777655 3332233455555555443 3345677763221 0 122233343332 3
Q ss_pred CcEEEEeCCChHH---HHh--hCCCCceeCCCCCHHHHHHHHHHhhc
Q 028606 86 GSKDIITARFTDV---ATM--VATTSTYPLECLSDEDCLRILAEQSL 127 (206)
Q Consensus 86 gs~IivTTr~~~v---~~~--~~~~~~~~l~~L~~~~~~~Lf~~~af 127 (206)
+..||+.|...+. ... .|. .-|-.++++.++-...+....-
T Consensus 80 ~~~ii~ls~~~~~~~~~~~~~~g~-~~~l~kp~~~~~l~~~l~~~~~ 125 (140)
T 2qr3_A 80 DLPVVLFTAYADIDLAVRGIKEGA-SDFVVKPWDNQKLLETLLNAAS 125 (140)
T ss_dssp TCCEEEEEEGGGHHHHHHHHHTTC-CEEEEESCCHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCHHHHHHHHHcCc-hheeeCCCCHHHHHHHHHHHHH
Confidence 4556655543332 222 233 3466778888887777776553
No 48
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=32.67 E-value=80 Score=23.18 Aligned_cols=65 Identities=17% Similarity=0.114 Sum_probs=35.3
Q ss_pred cEEEEEcCCCCCChhhHHHHhhhccCCC-----------CCCcEEEEeCCCh--HH----------HHhhCCCCceeCCC
Q 028606 56 KFLLFLDDLWNVNYDLWSYLCRPLVESC-----------APGSKDIITARFT--DV----------ATMVATTSTYPLEC 112 (206)
Q Consensus 56 r~LlVLDdv~~~~~~~~~~l~~~l~~~~-----------~~gs~IivTTr~~--~v----------~~~~~~~~~~~l~~ 112 (206)
.-+|+||++..-.....+.+...+. .. ..+.+||.||... .. ...+. .-.+.+.+
T Consensus 101 ~~~l~lDEi~~l~~~~q~~Ll~~l~-~~~~~~~g~~~~~~~~~~iI~atn~~~~~~~~~~~~~~~L~~Rl~-~~~i~lp~ 178 (265)
T 2bjv_A 101 GGTLFLDELATAPMMVQEKLLRVIE-YGELERVGGSQPLQVNVRLVCATNADLPAMVNEGTFRADLLDALA-FDVVQLPP 178 (265)
T ss_dssp TSEEEEESGGGSCHHHHHHHHHHHH-HCEECCCCC--CEECCCEEEEEESSCHHHHHHHTSSCHHHHHHHC-SEEEECCC
T ss_pred CcEEEEechHhcCHHHHHHHHHHHH-hCCeecCCCcccccCCeEEEEecCcCHHHHHHcCCccHHHHHhhc-CcEEeCCC
Confidence 4589999997444444444544443 11 1345788887752 11 11221 12477888
Q ss_pred CCH--HHHHHHH
Q 028606 113 LSD--EDCLRIL 122 (206)
Q Consensus 113 L~~--~~~~~Lf 122 (206)
|.+ ++...++
T Consensus 179 L~~R~~di~~l~ 190 (265)
T 2bjv_A 179 LRERESDIMLMA 190 (265)
T ss_dssp GGGCHHHHHHHH
T ss_pred hhhhhHHHHHHH
Confidence 876 5555443
No 49
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=32.05 E-value=97 Score=19.66 Aligned_cols=105 Identities=13% Similarity=0.078 Sum_probs=53.2
Q ss_pred eCCCCCHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHcCCCcEEEEEcCCCCCChhhHHHHhhhccCCCCCCcEEEEe
Q 028606 13 VGGDFDALKVTKSILKSIATDQPVDDNDLNLLQGKLKKQFSGKKFLLFLDDLWNVNYDLWSYLCRPLVESCAPGSKDIIT 92 (206)
Q Consensus 13 vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~~gs~IivT 92 (206)
+..+......++.++... +.+.....+..+....+. ..+--++|+|- -. +...++.+. .+. ...++..||+.
T Consensus 10 vdd~~~~~~~l~~~L~~~-g~~v~~~~~~~~a~~~l~---~~~~dlvi~d~-~~-~~~g~~~~~-~l~-~~~~~~pii~l 81 (142)
T 2qxy_A 10 VDESRITFLAVKNALEKD-GFNVIWAKNEQEAFTFLR---REKIDLVFVDV-FE-GEESLNLIR-RIR-EEFPDTKVAVL 81 (142)
T ss_dssp ECSCHHHHHHHHHHHGGG-TCEEEEESSHHHHHHHHT---TSCCSEEEEEC-TT-THHHHHHHH-HHH-HHCTTCEEEEE
T ss_pred EeCCHHHHHHHHHHHHhC-CCEEEEECCHHHHHHHHh---ccCCCEEEEeC-CC-CCcHHHHHH-HHH-HHCCCCCEEEE
Confidence 455666677777777765 433223334444443333 23455788886 31 333333222 222 12235556655
Q ss_pred CCChHH-----HHhhCCCCceeCCCCCHHHHHHHHHHhh
Q 028606 93 ARFTDV-----ATMVATTSTYPLECLSDEDCLRILAEQS 126 (206)
Q Consensus 93 Tr~~~v-----~~~~~~~~~~~l~~L~~~~~~~Lf~~~a 126 (206)
|...+. +...|.. -|-.++++.++-...+....
T Consensus 82 s~~~~~~~~~~~~~~g~~-~~l~kP~~~~~l~~~i~~~~ 119 (142)
T 2qxy_A 82 SAYVDKDLIINSVKAGAV-DYILKPFRLDYLLERVKKII 119 (142)
T ss_dssp ESCCCHHHHHHHHHHTCS-CEEESSCCHHHHHHHHHHHH
T ss_pred ECCCCHHHHHHHHHCCcc-eeEeCCCCHHHHHHHHHHHH
Confidence 543221 1223433 35667888888777776655
No 50
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=29.08 E-value=34 Score=26.38 Aligned_cols=47 Identities=13% Similarity=-0.033 Sum_probs=28.0
Q ss_pred CCcEEEEEcCCCCC-ChhhHHHHhhhccCCCCCCcEEEEeCCChHHHHh
Q 028606 54 GKKFLLFLDDLWNV-NYDLWSYLCRPLVESCAPGSKDIITARFTDVATM 101 (206)
Q Consensus 54 ~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~~~~gs~IivTTr~~~v~~~ 101 (206)
...-+++||+.-.. +...-+.+...+. ....|..||+||.+..+...
T Consensus 240 ~~~~~lllDEp~~~LD~~~~~~l~~~l~-~~~~~~~vi~~tH~~~~~~~ 287 (322)
T 1e69_A 240 KPSPFYVLDEVDSPLDDYNAERFKRLLK-ENSKHTQFIVITHNKIVMEA 287 (322)
T ss_dssp SCCSEEEEESCCSSCCHHHHHHHHHHHH-HHTTTSEEEEECCCTTGGGG
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHH-HhcCCCeEEEEECCHHHHhh
Confidence 34458999997543 4444445554444 22246678888887665544
No 51
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=28.87 E-value=1.2e+02 Score=19.75 Aligned_cols=104 Identities=13% Similarity=0.063 Sum_probs=54.3
Q ss_pred eCCCCCHHHHHHHHHHHhhcCCCC-CCCCHHHHHHHHHHHcCCCcEEEEEcCCCCC--ChhhHHHHhhhccCCCCCCcEE
Q 028606 13 VGGDFDALKVTKSILKSIATDQPV-DDNDLNLLQGKLKKQFSGKKFLLFLDDLWNV--NYDLWSYLCRPLVESCAPGSKD 89 (206)
Q Consensus 13 vs~~~~~~~i~~~i~~~l~~~~~~-~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~~~~~~l~~~l~~~~~~gs~I 89 (206)
+..+....+.++.++.+. +.... ...+.+++...+.+.- .+--++++|---.+ ..+..+.+.... ....|
T Consensus 42 vdd~~~~~~~l~~~L~~~-g~~v~~~~~~~~~al~~l~~~~-~~~dliilD~~l~~~~g~~~~~~lr~~~-----~~~~i 114 (157)
T 3hzh_A 42 VDDSVFTVKQLTQIFTSE-GFNIIDTAADGEEAVIKYKNHY-PNIDIVTLXITMPKMDGITCLSNIMEFD-----KNARV 114 (157)
T ss_dssp ECSCHHHHHHHHHHHHHT-TCEEEEEESSHHHHHHHHHHHG-GGCCEEEECSSCSSSCHHHHHHHHHHHC-----TTCCE
T ss_pred EeCCHHHHHHHHHHHHhC-CCeEEEEECCHHHHHHHHHhcC-CCCCEEEEeccCCCccHHHHHHHHHhhC-----CCCcE
Confidence 555666777888888776 44333 4456666666655431 02247777743211 222334444332 34455
Q ss_pred EEeCCC--hHH-HH--hhCCCCceeCCCCCHHHHHHHHHH
Q 028606 90 IITARF--TDV-AT--MVATTSTYPLECLSDEDCLRILAE 124 (206)
Q Consensus 90 ivTTr~--~~v-~~--~~~~~~~~~l~~L~~~~~~~Lf~~ 124 (206)
|+.|.. ... .. ..|+ .-|-.++++.++-...+..
T Consensus 115 i~ls~~~~~~~~~~~~~~g~-~~~l~KP~~~~~l~~~i~~ 153 (157)
T 3hzh_A 115 IMISALGKEQLVKDCLIKGA-KTFIVKPLDRAKVLQRVMS 153 (157)
T ss_dssp EEEESCCCHHHHHHHHHTTC-SEEEESSCCHHHHHHHHHH
T ss_pred EEEeccCcHHHHHHHHHcCC-CEEEeCCCCHHHHHHHHHH
Confidence 555543 222 12 2232 3466778888777666554
No 52
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=28.78 E-value=1.5e+02 Score=22.49 Aligned_cols=65 Identities=17% Similarity=0.123 Sum_probs=35.6
Q ss_pred EEEEEcCCCCCChhhHHHHhhhccCCC-----------CCCcEEEEeCCChH---HH---------HhhCCCCceeCCCC
Q 028606 57 FLLFLDDLWNVNYDLWSYLCRPLVESC-----------APGSKDIITARFTD---VA---------TMVATTSTYPLECL 113 (206)
Q Consensus 57 ~LlVLDdv~~~~~~~~~~l~~~l~~~~-----------~~gs~IivTTr~~~---v~---------~~~~~~~~~~l~~L 113 (206)
-.|+||++..........+...+. .. ..+.+||.||...- +. ..++ .-.+.+.+|
T Consensus 98 g~L~LDEi~~l~~~~q~~Ll~~l~-~~~~~~~g~~~~~~~~~riI~atn~~l~~~v~~g~fr~~L~~Rl~-~~~i~lPpL 175 (304)
T 1ojl_A 98 GTLFLDEIGDISPLMQVRLLRAIQ-EREVQRVGSNQTISVDVRLIAATHRDLAEEVSAGRFRQDLYYRLN-VVAIEMPSL 175 (304)
T ss_dssp SEEEEESCTTCCHHHHHHHHHHHH-SSBCCBTTBCCCCBCCCEEEEEESSCHHHHHHHTSSCHHHHHHHS-SEEEECCCS
T ss_pred CEEEEeccccCCHHHHHHHHHHHh-cCEeeecCCcccccCCeEEEEecCccHHHHHHhCCcHHHHHhhcC-eeEEeccCH
Confidence 478999997544445555555444 22 13467888776531 11 1111 124678888
Q ss_pred C--HHHHHHHHH
Q 028606 114 S--DEDCLRILA 123 (206)
Q Consensus 114 ~--~~~~~~Lf~ 123 (206)
. .+|...|+.
T Consensus 176 ~eR~edi~~l~~ 187 (304)
T 1ojl_A 176 RQRREDIPLLAD 187 (304)
T ss_dssp GGGGGGHHHHHH
T ss_pred HHhHhhHHHHHH
Confidence 8 455555444
No 53
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=28.06 E-value=1.1e+02 Score=19.04 Aligned_cols=108 Identities=8% Similarity=-0.002 Sum_probs=55.1
Q ss_pred eCCCCCHHHHHHHHHHHhhcCCCC-CCCCHHHHHHHHHHHcCCCcEEEEEcCCCCC--ChhhHHHHhhhccCCCCCCcEE
Q 028606 13 VGGDFDALKVTKSILKSIATDQPV-DDNDLNLLQGKLKKQFSGKKFLLFLDDLWNV--NYDLWSYLCRPLVESCAPGSKD 89 (206)
Q Consensus 13 vs~~~~~~~i~~~i~~~l~~~~~~-~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~~~~~~l~~~l~~~~~~gs~I 89 (206)
+..+....+.++.++.+. +.... ...+.++....+.+. .--++++|---.+ ..+....+... .++..|
T Consensus 7 vdd~~~~~~~l~~~L~~~-g~~v~~~~~~~~~a~~~~~~~---~~dlii~d~~l~~~~g~~~~~~l~~~-----~~~~~i 77 (134)
T 3f6c_A 7 IDDHPLAIAAIRNLLIKN-DIEILAELTEGGSAVQRVETL---KPDIVIIDVDIPGVNGIQVLETLRKR-----QYSGII 77 (134)
T ss_dssp ECCCHHHHHHHHHHHHHT-TEEEEEEESSSTTHHHHHHHH---CCSEEEEETTCSSSCHHHHHHHHHHT-----TCCSEE
T ss_pred EcCCHHHHHHHHHHHhhC-CcEEEEEcCCHHHHHHHHHhc---CCCEEEEecCCCCCChHHHHHHHHhc-----CCCCeE
Confidence 556666777888888776 33221 222333344444432 3457777743211 12223333332 235556
Q ss_pred EEeCCChH---HHH--hhCCCCceeCCCCCHHHHHHHHHHhhcCCC
Q 028606 90 IITARFTD---VAT--MVATTSTYPLECLSDEDCLRILAEQSLGTT 130 (206)
Q Consensus 90 ivTTr~~~---v~~--~~~~~~~~~l~~L~~~~~~~Lf~~~af~~~ 130 (206)
|+.|...+ ... ..|. .-|-.++.+.++-...+....-+..
T Consensus 78 i~~s~~~~~~~~~~~~~~g~-~~~l~kp~~~~~l~~~i~~~~~~~~ 122 (134)
T 3f6c_A 78 IIVSAKNDHFYGKHCADAGA-NGFVSKKEGMNNIIAAIEAAKNGYC 122 (134)
T ss_dssp EEEECC---CTHHHHHHTTC-SEEEEGGGCTHHHHHHHHHHHTTCC
T ss_pred EEEeCCCChHHHHHHHHhCC-CEEEeCCCCHHHHHHHHHHHHCCCE
Confidence 65554332 222 2333 3466778888888887777664443
No 54
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=27.87 E-value=1e+02 Score=23.08 Aligned_cols=26 Identities=15% Similarity=0.232 Sum_probs=17.2
Q ss_pred CcEEEEEcCCCCCChhhHHHHhhhcc
Q 028606 55 KKFLLFLDDLWNVNYDLWSYLCRPLV 80 (206)
Q Consensus 55 kr~LlVLDdv~~~~~~~~~~l~~~l~ 80 (206)
..-+++||++...+......+...+.
T Consensus 119 ~~~vl~lDEi~~l~~~~~~~Ll~~le 144 (311)
T 4fcw_A 119 PYSVILFDAIEKAHPDVFNILLQMLD 144 (311)
T ss_dssp SSEEEEEETGGGSCHHHHHHHHHHHH
T ss_pred CCeEEEEeChhhcCHHHHHHHHHHHh
Confidence 34699999997545555666655543
No 55
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=27.14 E-value=1.3e+02 Score=22.85 Aligned_cols=72 Identities=15% Similarity=0.186 Sum_probs=44.3
Q ss_pred CCcEEEEEcCCCCCChhhHHHHhhhccCCCC------------------CCcEEEEeCCChHH-HHh-hCC-CCceeCCC
Q 028606 54 GKKFLLFLDDLWNVNYDLWSYLCRPLVESCA------------------PGSKDIITARFTDV-ATM-VAT-TSTYPLEC 112 (206)
Q Consensus 54 ~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~------------------~gs~IivTTr~~~v-~~~-~~~-~~~~~l~~ 112 (206)
.+..+|+||++..........+...+. ... ++..+|.+|..... ... ... ...+.+.+
T Consensus 105 ~~~~vl~lDEi~~l~~~~~~~Ll~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~~l~~~L~~R~~~~i~l~~ 183 (338)
T 3pfi_A 105 SEGDILFIDEIHRLSPAIEEVLYPAME-DYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLSNPLRDRFGMQFRLEF 183 (338)
T ss_dssp CTTCEEEEETGGGCCHHHHHHHHHHHH-TSCC---------CCCCCCCCCCCEEEEEESCGGGSCHHHHTTCSEEEECCC
T ss_pred cCCCEEEEechhhcCHHHHHHHHHHHH-hccchhhcccCccccceecCCCCeEEEEeCCCccccCHHHHhhcCEEeeCCC
Confidence 456789999997544555555555544 221 12456666654321 111 111 35789999
Q ss_pred CCHHHHHHHHHHhh
Q 028606 113 LSDEDCLRILAEQS 126 (206)
Q Consensus 113 L~~~~~~~Lf~~~a 126 (206)
++.++...++...+
T Consensus 184 ~~~~e~~~il~~~~ 197 (338)
T 3pfi_A 184 YKDSELALILQKAA 197 (338)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHH
Confidence 99999999998776
No 56
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=26.91 E-value=1.9e+02 Score=23.41 Aligned_cols=64 Identities=19% Similarity=0.285 Sum_probs=41.8
Q ss_pred EEEEcCCCCCChhhHHHHhhhccCCCCCCcEEEEeC---------CC----h-----HHHHhhCCCCceeCCCCCHHHHH
Q 028606 58 LLFLDDLWNVNYDLWSYLCRPLVESCAPGSKDIITA---------RF----T-----DVATMVATTSTYPLECLSDEDCL 119 (206)
Q Consensus 58 LlVLDdv~~~~~~~~~~l~~~l~~~~~~gs~IivTT---------r~----~-----~v~~~~~~~~~~~l~~L~~~~~~ 119 (206)
++++|++..-+.+..+.+...+. ..... .+|+.| .+ . .+...+ ..+.+.+++.++..
T Consensus 298 VliIDEa~~l~~~a~~aLlk~lE-e~~~~-~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~---~~~~~~~~~~~e~~ 372 (456)
T 2c9o_A 298 VLFVDEVHMLDIECFTYLHRALE-SSIAP-IVIFASNRGNCVIRGTEDITSPHGIPLDLLDRV---MIIRTMLYTPQEMK 372 (456)
T ss_dssp EEEEESGGGCBHHHHHHHHHHTT-STTCC-EEEEEECCSEEECBTTSSCEEETTCCHHHHTTE---EEEECCCCCHHHHH
T ss_pred EEEEechhhcCHHHHHHHHHHhh-ccCCC-EEEEecCCccccccccccccccccCChhHHhhc---ceeeCCCCCHHHHH
Confidence 88999997556677777877776 33333 344343 11 1 122222 35799999999999
Q ss_pred HHHHHhh
Q 028606 120 RILAEQS 126 (206)
Q Consensus 120 ~Lf~~~a 126 (206)
+++...+
T Consensus 373 ~iL~~~~ 379 (456)
T 2c9o_A 373 QIIKIRA 379 (456)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998765
No 57
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=26.22 E-value=40 Score=22.33 Aligned_cols=39 Identities=8% Similarity=0.031 Sum_probs=23.9
Q ss_pred cEEEEEcCCCCCChhhHHHHhhhccCCCCCCcEEEEeCC
Q 028606 56 KFLLFLDDLWNVNYDLWSYLCRPLVESCAPGSKDIITAR 94 (206)
Q Consensus 56 r~LlVLDdv~~~~~~~~~~l~~~l~~~~~~gs~IivTTr 94 (206)
.-.++||++..-.......+...+......+.++|.||.
T Consensus 76 ~~~l~lDei~~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn 114 (143)
T 3co5_A 76 GGVLYVGDIAQYSRNIQTGITFIIGKAERCRVRVIASCS 114 (143)
T ss_dssp TSEEEEEECTTCCHHHHHHHHHHHHHHTTTTCEEEEEEE
T ss_pred CCeEEEeChHHCCHHHHHHHHHHHHhCCCCCEEEEEecC
Confidence 457899999754455555555555411234567888775
No 58
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=25.88 E-value=62 Score=26.04 Aligned_cols=48 Identities=8% Similarity=0.016 Sum_probs=29.0
Q ss_pred CCcEEEEEcCCCCC-ChhhHHHHhhhccCCCCCCcEEEEeCCChHHHHh
Q 028606 54 GKKFLLFLDDLWNV-NYDLWSYLCRPLVESCAPGSKDIITARFTDVATM 101 (206)
Q Consensus 54 ~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~~~~gs~IivTTr~~~v~~~ 101 (206)
+..-+++||++... +...-..+...+......|..+|+||.+......
T Consensus 354 ~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~~~ 402 (430)
T 1w1w_A 354 QPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEK 402 (430)
T ss_dssp SCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTT
T ss_pred CCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHh
Confidence 45568999998643 4444444554443112236778888888766543
No 59
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=25.85 E-value=57 Score=25.71 Aligned_cols=50 Identities=12% Similarity=0.094 Sum_probs=28.5
Q ss_pred HHcCCC-cEEEEEcCCCCC-ChhhHHHHhhhccCCCCCCcEEEEeCCChHHHH
Q 028606 50 KQFSGK-KFLLFLDDLWNV-NYDLWSYLCRPLVESCAPGSKDIITARFTDVAT 100 (206)
Q Consensus 50 ~~L~~k-r~LlVLDdv~~~-~~~~~~~l~~~l~~~~~~gs~IivTTr~~~v~~ 100 (206)
..+.+. .-+++||++-.. +...-+.+...+. ....+..||+||.+.+++.
T Consensus 299 ~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~-~~~~~~~vi~~th~~~~~~ 350 (371)
T 3auy_A 299 NALIGNRVECIILDEPTVYLDENRRAKLAEIFR-KVKSIPQMIIITHHRELED 350 (371)
T ss_dssp HHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHH-HCCSCSEEEEEESCGGGGG
T ss_pred HHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHH-HhccCCeEEEEEChHHHHh
Confidence 334455 678999998643 3444444444443 2222335888888877543
No 60
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=25.33 E-value=2.4e+02 Score=21.88 Aligned_cols=73 Identities=7% Similarity=-0.033 Sum_probs=41.4
Q ss_pred CCCcEEEEEcCCCCCCh-----------hhHHHHhhhccC--CCCCCcEEEEeCCChH-----HHHhhCCCCceeCCCCC
Q 028606 53 SGKKFLLFLDDLWNVNY-----------DLWSYLCRPLVE--SCAPGSKDIITARFTD-----VATMVATTSTYPLECLS 114 (206)
Q Consensus 53 ~~kr~LlVLDdv~~~~~-----------~~~~~l~~~l~~--~~~~gs~IivTTr~~~-----v~~~~~~~~~~~l~~L~ 114 (206)
..+..+|+||++..-.. .....+...+.. ....+..||.||.... +.. .....+.+...+
T Consensus 141 ~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~ 218 (355)
T 2qp9_X 141 ENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPD 218 (355)
T ss_dssp HTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGGGSCHHHHH--TCCEEEECCCCC
T ss_pred HcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhcccccCCCeEEEeecCCcccCCHHHHc--ccCEEEEeCCcC
Confidence 45678999999962110 012223222220 1234556666776442 222 224567888999
Q ss_pred HHHHHHHHHHhhc
Q 028606 115 DEDCLRILAEQSL 127 (206)
Q Consensus 115 ~~~~~~Lf~~~af 127 (206)
.++-..++...+.
T Consensus 219 ~~~r~~il~~~l~ 231 (355)
T 2qp9_X 219 LAARTTMFEINVG 231 (355)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988763
No 61
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=24.65 E-value=2.3e+02 Score=21.48 Aligned_cols=73 Identities=7% Similarity=-0.028 Sum_probs=42.4
Q ss_pred CCCcEEEEEcCCCCCC-----------hhhHHHHhhhccC--CCCCCcEEEEeCCChH-----HHHhhCCCCceeCCCCC
Q 028606 53 SGKKFLLFLDDLWNVN-----------YDLWSYLCRPLVE--SCAPGSKDIITARFTD-----VATMVATTSTYPLECLS 114 (206)
Q Consensus 53 ~~kr~LlVLDdv~~~~-----------~~~~~~l~~~l~~--~~~~gs~IivTTr~~~-----v~~~~~~~~~~~l~~L~ 114 (206)
..+..+|+||++..-. ......+...+.. ....+..||.||.... +... ....+.+...+
T Consensus 108 ~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~~ld~al~~R--f~~~i~~~~p~ 185 (322)
T 3eie_A 108 ENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRR--FERRIYIPLPD 185 (322)
T ss_dssp HTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGGGSCHHHHHH--CCEEEECCCCC
T ss_pred hcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCceEEEEecCChhhCCHHHHcc--cCeEEEeCCCC
Confidence 3456899999986210 0112333322220 2334566666776532 2222 23467888899
Q ss_pred HHHHHHHHHHhhc
Q 028606 115 DEDCLRILAEQSL 127 (206)
Q Consensus 115 ~~~~~~Lf~~~af 127 (206)
.++-.+++...+.
T Consensus 186 ~~~r~~il~~~~~ 198 (322)
T 3eie_A 186 LAARTTMFEINVG 198 (322)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhc
Confidence 9999999998773
No 62
>1y0n_A Hypothetical UPF0270 protein PA3463; MCSG, midwest center for structural genomics, protein struct initiative, PSI, structural genomics; 2.00A {Pseudomonas aeruginosa} SCOP: d.291.1.1
Probab=24.58 E-value=1.2e+02 Score=18.26 Aligned_cols=28 Identities=7% Similarity=0.189 Sum_probs=23.9
Q ss_pred CCCHHHHHHHHHHHcCCCcEEEEEcCCC
Q 028606 38 DNDLNLLQGKLKKQFSGKKFLLFLDDLW 65 (206)
Q Consensus 38 ~~~~~~~~~~l~~~L~~kr~LlVLDdv~ 65 (206)
..++++....++..|+....+||.|...
T Consensus 33 E~sL~~kv~qv~~qL~~GeavIvfse~~ 60 (78)
T 1y0n_A 33 ETPLDVRVERARHALRRGEAVILFDPES 60 (78)
T ss_dssp -CCHHHHHHHHHHHHHTTSEEEEECTTT
T ss_pred cccHHHHHHHHHHHHHcCCEEEEECCCC
Confidence 6678888899999999999999999765
No 63
>2qkd_A Zinc finger protein ZPR1; helical hairpins, beta helix, anti-parrallel beta sheet, double straded anti-parallel beta helix, metal binding protein; 2.00A {Mus musculus}
Probab=23.95 E-value=53 Score=26.63 Aligned_cols=47 Identities=26% Similarity=0.345 Sum_probs=33.5
Q ss_pred CHHHHHHHHHHHhhcCCC--C-CC------CCHHHHHHHHHHHcCCC-cEEEEEcCCC
Q 028606 18 DALKVTKSILKSIATDQP--V-DD------NDLNLLQGKLKKQFSGK-KFLLFLDDLW 65 (206)
Q Consensus 18 ~~~~i~~~i~~~l~~~~~--~-~~------~~~~~~~~~l~~~L~~k-r~LlVLDdv~ 65 (206)
+++.++.++...+ .... . +. ...++..++|++.+.++ .|-|||||-.
T Consensus 317 TVEGlL~~i~d~L-~~~~~~~~ds~~~~~~~k~~~f~~kL~~~~~g~~pfTliidDP~ 373 (404)
T 2qkd_A 317 TLEGLLKDIRELV-TKNPFTLGDSSNPDQSEKLQEFSQKLGQIIEGKMKAHFIMNDPA 373 (404)
T ss_dssp EHHHHHHHHHHHH-HSSCCCSSSCCCGGGCHHHHHHHHHHHHHHTTSSCEEEEEEETT
T ss_pred eHHHHHHHHHHHH-hhcccccccCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEECCC
Confidence 6889999999888 3311 1 11 12456677888888875 8999999975
No 64
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=22.91 E-value=1.2e+02 Score=26.34 Aligned_cols=72 Identities=11% Similarity=0.137 Sum_probs=42.1
Q ss_pred CCcEEEEEcCCCCCChhhHHHHhhhccCCCC-----------CCcEEEEeCCChH----------------------HHH
Q 028606 54 GKKFLLFLDDLWNVNYDLWSYLCRPLVESCA-----------PGSKDIITARFTD----------------------VAT 100 (206)
Q Consensus 54 ~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~-----------~gs~IivTTr~~~----------------------v~~ 100 (206)
.....|+||++...+......+...+. .+. .+..||.||.... +..
T Consensus 556 ~~~~vl~lDEi~~~~~~~~~~Ll~~le-~~~~~~~~g~~~~~~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 634 (758)
T 1r6b_X 556 HPHAVLLLDEIEKAHPDVFNILLQVMD-NGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKK 634 (758)
T ss_dssp CSSEEEEEETGGGSCHHHHHHHHHHHH-HSEEEETTTEEEECTTEEEEEEECSSCC-----------------CHHHHHH
T ss_pred CCCcEEEEeCccccCHHHHHHHHHHhc-CcEEEcCCCCEEecCCeEEEEecCcchhhhhhcccCccccchHHHHHHHHHH
Confidence 346789999997556666666665554 211 2355787876411 111
Q ss_pred hh-----CC-CCceeCCCCCHHHHHHHHHHhh
Q 028606 101 MV-----AT-TSTYPLECLSDEDCLRILAEQS 126 (206)
Q Consensus 101 ~~-----~~-~~~~~l~~L~~~~~~~Lf~~~a 126 (206)
.+ +. ..++.+.+++.++...++....
T Consensus 635 ~~~~~l~~R~~~~i~~~~l~~~~~~~i~~~~l 666 (758)
T 1r6b_X 635 IFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFI 666 (758)
T ss_dssp HSCHHHHTTCSEEEECCCCCHHHHHHHHHHHH
T ss_pred hcCHHHHhhCCcceeeCCCCHHHHHHHHHHHH
Confidence 11 11 2357788888887777776544
No 65
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=22.82 E-value=3.7e+02 Score=23.26 Aligned_cols=79 Identities=14% Similarity=0.164 Sum_probs=43.0
Q ss_pred HHHHHHHc-CCCcEEEEEcCCCCC--------Chhh-HHHHhhhccCCCCCCcEEEEeCCChHHHHhhCC-------CCc
Q 028606 45 QGKLKKQF-SGKKFLLFLDDLWNV--------NYDL-WSYLCRPLVESCAPGSKDIITARFTDVATMVAT-------TST 107 (206)
Q Consensus 45 ~~~l~~~L-~~kr~LlVLDdv~~~--------~~~~-~~~l~~~l~~~~~~gs~IivTTr~~~v~~~~~~-------~~~ 107 (206)
...+.+.+ ..+..+|++|++..- .... ...+...+. ..+-.+|.+|...+....... -..
T Consensus 267 l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~---~~~~~~I~at~~~~~~~~~~~d~aL~~Rf~~ 343 (758)
T 1r6b_X 267 FKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS---SGKIRVIGSTTYQEFSNIFEKDRALARRFQK 343 (758)
T ss_dssp HHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSS---SCCCEEEEEECHHHHHCCCCCTTSSGGGEEE
T ss_pred HHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHh---CCCeEEEEEeCchHHhhhhhcCHHHHhCceE
Confidence 33333333 446789999999621 0112 222333332 234566666665543322211 125
Q ss_pred eeCCCCCHHHHHHHHHHhh
Q 028606 108 YPLECLSDEDCLRILAEQS 126 (206)
Q Consensus 108 ~~l~~L~~~~~~~Lf~~~a 126 (206)
+.+..++.++..+++....
T Consensus 344 i~v~~p~~~e~~~il~~l~ 362 (758)
T 1r6b_X 344 IDITEPSIEETVQIINGLK 362 (758)
T ss_dssp EECCCCCHHHHHHHHHHHH
T ss_pred EEcCCCCHHHHHHHHHHHH
Confidence 7899999999888887543
No 66
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=22.79 E-value=1.5e+02 Score=18.57 Aligned_cols=106 Identities=10% Similarity=0.036 Sum_probs=55.2
Q ss_pred eCCCCCHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHcCCCcEEEEEcCCCCCChhhHHHHhhhccCCCCCCcEEEEe
Q 028606 13 VGGDFDALKVTKSILKSIATDQPVDDNDLNLLQGKLKKQFSGKKFLLFLDDLWNVNYDLWSYLCRPLVESCAPGSKDIIT 92 (206)
Q Consensus 13 vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~~gs~IivT 92 (206)
+..+......++.++.+. +.......+..++...+.+. .--++++|---. +..-++.+. .+. ...+...||+.
T Consensus 13 vdd~~~~~~~l~~~L~~~-~~~v~~~~~~~~a~~~l~~~---~~dlvi~d~~l~-~~~g~~~~~-~l~-~~~~~~~ii~~ 85 (137)
T 3hdg_A 13 VEDDTDAREWLSTIISNH-FPEVWSAGDGEEGERLFGLH---APDVIITDIRMP-KLGGLEMLD-RIK-AGGAKPYVIVI 85 (137)
T ss_dssp ECSCHHHHHHHHHHHHTT-CSCEEEESSHHHHHHHHHHH---CCSEEEECSSCS-SSCHHHHHH-HHH-HTTCCCEEEEC
T ss_pred EeCCHHHHHHHHHHHHhc-CcEEEEECCHHHHHHHHhcc---CCCEEEEeCCCC-CCCHHHHHH-HHH-hcCCCCcEEEE
Confidence 555566677777777765 43333445666666666543 334777774321 222222222 222 22345667776
Q ss_pred CCChHH---H--HhhCCCCceeCCCCCHHHHHHHHHHhh
Q 028606 93 ARFTDV---A--TMVATTSTYPLECLSDEDCLRILAEQS 126 (206)
Q Consensus 93 Tr~~~v---~--~~~~~~~~~~l~~L~~~~~~~Lf~~~a 126 (206)
|...+. . ...|. .-|-.++++.++-...+.+..
T Consensus 86 s~~~~~~~~~~~~~~g~-~~~l~kP~~~~~l~~~i~~~~ 123 (137)
T 3hdg_A 86 SAFSEMKYFIKAIELGV-HLFLPKPIEPGRLMETLEDFR 123 (137)
T ss_dssp CCCCCHHHHHHHHHHCC-SEECCSSCCHHHHHHHHHHHH
T ss_pred ecCcChHHHHHHHhCCc-ceeEcCCCCHHHHHHHHHHHH
Confidence 654331 1 22233 346677888877766665443
No 67
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=22.22 E-value=2.5e+02 Score=21.03 Aligned_cols=74 Identities=12% Similarity=0.094 Sum_probs=42.5
Q ss_pred CCCcEEEEEcCCCCC--------------ChhhHHHHhhhccC-CCCCCcEEEEeCCChHHH-Hh-hC---CCCceeCCC
Q 028606 53 SGKKFLLFLDDLWNV--------------NYDLWSYLCRPLVE-SCAPGSKDIITARFTDVA-TM-VA---TTSTYPLEC 112 (206)
Q Consensus 53 ~~kr~LlVLDdv~~~--------------~~~~~~~l~~~l~~-~~~~gs~IivTTr~~~v~-~~-~~---~~~~~~l~~ 112 (206)
.....+|++|++..- .......+...+.. ....+..||.||...+.. .. .. ....+.+..
T Consensus 106 ~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~ 185 (301)
T 3cf0_A 106 QAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPL 185 (301)
T ss_dssp HTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCC
T ss_pred hcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCccccChHHhcCCccceEEecCC
Confidence 456789999998620 00112333333320 123356777777655322 11 11 234688999
Q ss_pred CCHHHHHHHHHHhh
Q 028606 113 LSDEDCLRILAEQS 126 (206)
Q Consensus 113 L~~~~~~~Lf~~~a 126 (206)
.+.++-.+++....
T Consensus 186 p~~~~r~~il~~~l 199 (301)
T 3cf0_A 186 PDEKSRVAILKANL 199 (301)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHH
Confidence 99998888887776
No 68
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=22.18 E-value=1.3e+02 Score=22.52 Aligned_cols=54 Identities=11% Similarity=0.019 Sum_probs=31.9
Q ss_pred HHHHcCCCcEEEEEcCCCCC-ChhhHHHHhhhccCCCCCCcEEEEeCCChHHHHh
Q 028606 48 LKKQFSGKKFLLFLDDLWNV-NYDLWSYLCRPLVESCAPGSKDIITARFTDVATM 101 (206)
Q Consensus 48 l~~~L~~kr~LlVLDdv~~~-~~~~~~~l~~~l~~~~~~gs~IivTTr~~~v~~~ 101 (206)
+-+.|..+.=+++||.--.. +...-+.+...+..-...|..||++|.+.+.+..
T Consensus 175 iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~ 229 (267)
T 2zu0_C 175 ILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDY 229 (267)
T ss_dssp HHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGT
T ss_pred HHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHh
Confidence 33445556667899976432 3444444444444112347789999998776654
No 69
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=22.05 E-value=2.5e+02 Score=24.88 Aligned_cols=39 Identities=15% Similarity=0.237 Sum_probs=25.7
Q ss_pred cEEEEEcCCCCCChhhHHHHhhhccCCCC-----------CCcEEEEeCCC
Q 028606 56 KFLLFLDDLWNVNYDLWSYLCRPLVESCA-----------PGSKDIITARF 95 (206)
Q Consensus 56 r~LlVLDdv~~~~~~~~~~l~~~l~~~~~-----------~gs~IivTTr~ 95 (206)
.-+|+||++...+......+...+. .+. .+..||+||..
T Consensus 661 ~~vl~lDEi~~l~~~~~~~Ll~~l~-~~~~~~~~g~~vd~~~~iiI~tsn~ 710 (854)
T 1qvr_A 661 YSVILFDEIEKAHPDVFNILLQILD-DGRLTDSHGRTVDFRNTVIILTSNL 710 (854)
T ss_dssp SEEEEESSGGGSCHHHHHHHHHHHT-TTEECCSSSCCEECTTEEEEEECCT
T ss_pred CeEEEEecccccCHHHHHHHHHHhc-cCceECCCCCEeccCCeEEEEecCc
Confidence 4689999997556666667766665 321 24458888774
No 70
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=21.64 E-value=1.7e+02 Score=18.78 Aligned_cols=106 Identities=12% Similarity=-0.011 Sum_probs=52.0
Q ss_pred eCCCCCHHHHHHHHHHHhhc--CCCCCCCCHHHHHHHHHHHcCCCcEEEEEcCCCCCChhhHHHHhhhccCCCCCCcEEE
Q 028606 13 VGGDFDALKVTKSILKSIAT--DQPVDDNDLNLLQGKLKKQFSGKKFLLFLDDLWNVNYDLWSYLCRPLVESCAPGSKDI 90 (206)
Q Consensus 13 vs~~~~~~~i~~~i~~~l~~--~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~~gs~Ii 90 (206)
|..+....+.++.++... + .......+.+++...+. ...-=++++|---. +..-++.+. .+. ...++..||
T Consensus 26 vdd~~~~~~~l~~~L~~~-~~~~~v~~~~~~~~al~~l~---~~~~dlii~D~~l~-~~~g~~~~~-~l~-~~~~~~~ii 98 (150)
T 4e7p_A 26 AEDQSMLRDAMCQLLTLQ-PDVESVLQAKNGQEAIQLLE---KESVDIAILDVEMP-VKTGLEVLE-WIR-SEKLETKVV 98 (150)
T ss_dssp ECSCHHHHHHHHHHHHTS-TTEEEEEEESSHHHHHHHHT---TSCCSEEEECSSCS-SSCHHHHHH-HHH-HTTCSCEEE
T ss_pred EcCCHHHHHHHHHHHHhC-CCcEEEEEECCHHHHHHHhh---ccCCCEEEEeCCCC-CCcHHHHHH-HHH-HhCCCCeEE
Confidence 555666677777777655 2 11122334444433332 23344777774321 222232222 222 222355566
Q ss_pred EeCCChH---HHH--hhCCCCceeCCCCCHHHHHHHHHHhh
Q 028606 91 ITARFTD---VAT--MVATTSTYPLECLSDEDCLRILAEQS 126 (206)
Q Consensus 91 vTTr~~~---v~~--~~~~~~~~~l~~L~~~~~~~Lf~~~a 126 (206)
+.|...+ ... ..|. .-|-.++.+.++-...+....
T Consensus 99 ~ls~~~~~~~~~~~~~~g~-~~~l~Kp~~~~~l~~~i~~~~ 138 (150)
T 4e7p_A 99 VVTTFKRAGYFERAVKAGV-DAYVLKERSIADLMQTLHTVL 138 (150)
T ss_dssp EEESCCCHHHHHHHHHTTC-SEEEETTSCHHHHHHHHHHHH
T ss_pred EEeCCCCHHHHHHHHHCCC-cEEEecCCCHHHHHHHHHHHH
Confidence 5554332 222 2232 346678888888877777665
No 71
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=21.51 E-value=1.7e+02 Score=18.71 Aligned_cols=108 Identities=10% Similarity=0.033 Sum_probs=53.5
Q ss_pred eCCCCCHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHHHcCCCcEEEEEcCCCCC--ChhhHHHHhhhccCCCCCCcEEE
Q 028606 13 VGGDFDALKVTKSILKSIATDQPVDDNDLNLLQGKLKKQFSGKKFLLFLDDLWNV--NYDLWSYLCRPLVESCAPGSKDI 90 (206)
Q Consensus 13 vs~~~~~~~i~~~i~~~l~~~~~~~~~~~~~~~~~l~~~L~~kr~LlVLDdv~~~--~~~~~~~l~~~l~~~~~~gs~Ii 90 (206)
|..+......++.+++.. +.......+.++..+.+.. .+-=++++|---.+ ..+....+...-+ .......||
T Consensus 20 vdd~~~~~~~l~~~L~~~-g~~v~~~~~~~~al~~~~~---~~~dlvl~D~~mp~~~g~~~~~~lr~~~~-~~~~~~pii 94 (143)
T 3m6m_D 20 ADDHEANRMVLQRLLEKA-GHKVLCVNGAEQVLDAMAE---EDYDAVIVDLHMPGMNGLDMLKQLRVMQA-SGMRYTPVV 94 (143)
T ss_dssp ECSSHHHHHHHHHHHHC---CEEEEESSHHHHHHHHHH---SCCSEEEEESCCSSSCHHHHHHHHHHHHH-TTCCCCCEE
T ss_pred EeCCHHHHHHHHHHHHHc-CCeEEEeCCHHHHHHHHhc---CCCCEEEEeCCCCCCCHHHHHHHHHhchh-ccCCCCeEE
Confidence 555666777777777765 4332223444554444432 33447777732110 2233344442222 222334455
Q ss_pred EeCC-Ch-HH-HH--hhCCCCceeCCCCCHHHHHHHHHHhh
Q 028606 91 ITAR-FT-DV-AT--MVATTSTYPLECLSDEDCLRILAEQS 126 (206)
Q Consensus 91 vTTr-~~-~v-~~--~~~~~~~~~l~~L~~~~~~~Lf~~~a 126 (206)
+.|. .. .. .. ..|. .-|-.++++.++-...+...+
T Consensus 95 ~~s~~~~~~~~~~~~~~Ga-~~~l~KP~~~~~L~~~l~~~~ 134 (143)
T 3m6m_D 95 VLSADVTPEAIRACEQAGA-RAFLAKPVVAAKLLDTLADLA 134 (143)
T ss_dssp EEESCCCHHHHHHHHHTTC-SEEEESSCCHHHHHHHHHHHC
T ss_pred EEeCCCCHHHHHHHHHcCh-hheeeCCCCHHHHHHHHHHHH
Confidence 5444 22 22 12 2233 457788999988888777654
No 72
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=20.81 E-value=95 Score=19.69 Aligned_cols=107 Identities=12% Similarity=0.039 Sum_probs=53.0
Q ss_pred eCCCCCHHHHHHHHHHH-hhcCCCCCCCCHHHHHHHHHHHcCC-C-cEEEEEcCCCC-C--ChhhHHHHhhhccCCCCCC
Q 028606 13 VGGDFDALKVTKSILKS-IATDQPVDDNDLNLLQGKLKKQFSG-K-KFLLFLDDLWN-V--NYDLWSYLCRPLVESCAPG 86 (206)
Q Consensus 13 vs~~~~~~~i~~~i~~~-l~~~~~~~~~~~~~~~~~l~~~L~~-k-r~LlVLDdv~~-~--~~~~~~~l~~~l~~~~~~g 86 (206)
|..+......++.++.. . +.+.....+.+++. +.+.. . -=++++|---. + ..+....+... + ...+
T Consensus 10 vdd~~~~~~~l~~~L~~~~-~~~v~~~~~~~~a~----~~l~~~~~~dlvi~D~~l~~~~~g~~~~~~l~~~-~--~~~~ 81 (140)
T 3lua_A 10 IDYFEYEREKTKIIFDNIG-EYDFIEVENLKKFY----SIFKDLDSITLIIMDIAFPVEKEGLEVLSAIRNN-S--RTAN 81 (140)
T ss_dssp ECSCHHHHHHHHHHHHHHC-CCEEEEECSHHHHH----TTTTTCCCCSEEEECSCSSSHHHHHHHHHHHHHS-G--GGTT
T ss_pred EeCCHHHHHHHHHHHHhcc-CccEEEECCHHHHH----HHHhcCCCCcEEEEeCCCCCCCcHHHHHHHHHhC-c--ccCC
Confidence 55666677788888887 4 33322333444332 33333 3 44777774331 0 11222333330 0 2235
Q ss_pred cEEEEeCCChH---HHH--hhCCCCceeCCCCCHHHHHHHHHHhhcC
Q 028606 87 SKDIITARFTD---VAT--MVATTSTYPLECLSDEDCLRILAEQSLG 128 (206)
Q Consensus 87 s~IivTTr~~~---v~~--~~~~~~~~~l~~L~~~~~~~Lf~~~af~ 128 (206)
..||+.|...+ +.. ..| ..-|-.++++.++-...+....-+
T Consensus 82 ~~ii~ls~~~~~~~~~~~~~~g-~~~~l~KP~~~~~l~~~i~~~~~~ 127 (140)
T 3lua_A 82 TPVIIATKSDNPGYRHAALKFK-VSDYILKPYPTKRLENSVRSVLKI 127 (140)
T ss_dssp CCEEEEESCCCHHHHHHHHHSC-CSEEEESSCCTTHHHHHHHHHHCC
T ss_pred CCEEEEeCCCCHHHHHHHHHcC-CCEEEECCCCHHHHHHHHHHHHHh
Confidence 55555554322 222 223 235677788888777777665533
No 73
>4a8j_B Elongator complex protein 5; transcription; 2.10A {Saccharomyces cerevisiae} PDB: 4ejs_B
Probab=20.04 E-value=2.9e+02 Score=20.92 Aligned_cols=50 Identities=16% Similarity=0.274 Sum_probs=26.8
Q ss_pred CHHHHHHHHHHHc------CCCcEEEEEcCCCCCChhhHHHHhhhccCCCCCCcEEEEe
Q 028606 40 DLNLLQGKLKKQF------SGKKFLLFLDDLWNVNYDLWSYLCRPLVESCAPGSKDIIT 92 (206)
Q Consensus 40 ~~~~~~~~l~~~L------~~kr~LlVLDdv~~~~~~~~~~l~~~l~~~~~~gs~IivT 92 (206)
+.+++.+.+...+ .++|.|||+|-+-.-....+..+...+- ++++.+|.|
T Consensus 79 sl~~i~~eI~s~~p~~~~~~~~k~LVIIDSLN~l~~~~L~~FlsSi~---sP~~sLv~v 134 (270)
T 4a8j_B 79 DFVHLVKQIISYLPAATATQAKKHMVIIDSLNYISTEYITRFLSEIA---SPHCTMVAT 134 (270)
T ss_dssp CHHHHHHHHHHTCC-----CCCCEEEEESCGGGSCGGGHHHHHHHHC---CTTEEEEEE
T ss_pred CHHHHHHHHHHhCCCccCCCCcceEEEEecCcchhhhhHHHHHHHhh---cCCcEEEEE
Confidence 3444444444444 2569999999885333345555554443 334444433
Done!