BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028608
(206 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8W485|Y5010_ARATH Uncharacterized protein At5g50100, mitochondrial OS=Arabidopsis
thaliana GN=At5g50100 PE=1 SV=1
Length = 214
Score = 244 bits (624), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 123/200 (61%), Positives = 149/200 (74%), Gaps = 15/200 (7%)
Query: 1 MAVRGAAAIACTT---RGRNPFVSSANHYFFMRFHHSPSRSFQRFTSHPNHRSGYRNQIR 57
MA RGA A A +T RNP + S + +F F+H R +G++ Q+R
Sbjct: 1 MATRGAVAAAASTIWKHRRNPSLRSLSRHFNPNFNH-------RIIP-----TGFKYQVR 48
Query: 58 AIQGATADPLTSKKEYDKDPSPENWKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDI 117
AIQG + DP+ + + ++P P+NWKIKMLYDGDCPLCMREVNML ERN+++GTIKFVDI
Sbjct: 49 AIQGTSTDPVITPLKNREEPKPQNWKIKMLYDGDCPLCMREVNMLMERNEKHGTIKFVDI 108
Query: 118 SSDEYSIEENQGLDYKTVMGSIHAIVSDGTVVTDVEAFRRLYEEVGLGWVYAITKYEPIA 177
SS++YS E+NQGLDYKTVMG IHAI SDG VV VEAFRRLYEEVGLGWVY ITK+EPI
Sbjct: 109 SSNDYSPEDNQGLDYKTVMGQIHAIQSDGNVVKGVEAFRRLYEEVGLGWVYTITKFEPIG 168
Query: 178 KIADFVYSVWAKYRLQITGK 197
K+AD VY VWAKYRLQ+TG+
Sbjct: 169 KLADVVYDVWAKYRLQVTGR 188
>sp|P40761|YUXK_BACSU Uncharacterized protein YuxK OS=Bacillus subtilis (strain 168)
GN=yuxK PE=3 SV=1
Length = 137
Score = 37.7 bits (86), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 31/113 (27%), Positives = 49/113 (43%), Gaps = 4/113 (3%)
Query: 86 MLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDE-YSIEENQGLDYKTVMGSIHAIVS 144
+L+DG C LC V + +R+ G I F + S+ S+ + GL T +
Sbjct: 11 LLFDGVCNLCNGAVQFIIKRDPD-GLISFTSLQSETGQSLLKKSGL--PTDRFDSFVFIE 67
Query: 145 DGTVVTDVEAFRRLYEEVGLGWVYAITKYEPIAKIADFVYSVWAKYRLQITGK 197
DG V T A +++ + W + + + D VYS AK R + GK
Sbjct: 68 DGQVYTKSTAAIKVFRHLRGPWRLFVLFFAVPKPVRDMVYSFIAKNRYKWFGK 120
>sp|Q5X865|RPOC_LEGPA DNA-directed RNA polymerase subunit beta' OS=Legionella pneumophila
(strain Paris) GN=rpoC PE=3 SV=1
Length = 1401
Score = 33.5 bits (75), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 5/88 (5%)
Query: 102 LKERNKQYGTIKFVDISSDEYSIEENQGLDYKTVMGSIHAIVSDGTVVTDVEAFRRLYEE 161
LK N Y T + VD++ D E++ G D +M ++ G +V + R+
Sbjct: 782 LKTANSGYLTRRLVDVAQDVVITEDDCGTDTGILM---QPLIEGGDIVEPLH--ERVLGR 836
Query: 162 VGLGWVYAITKYEPIAKIADFVYSVWAK 189
V VY T+ EP+ K + W +
Sbjct: 837 VVASDVYIPTQTEPVVKAGTLLDEEWVE 864
>sp|Q5ZYP9|RPOC_LEGPH DNA-directed RNA polymerase subunit beta' OS=Legionella pneumophila
subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 /
DSM 7513) GN=rpoC PE=3 SV=2
Length = 1401
Score = 33.5 bits (75), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 5/88 (5%)
Query: 102 LKERNKQYGTIKFVDISSDEYSIEENQGLDYKTVMGSIHAIVSDGTVVTDVEAFRRLYEE 161
LK N Y T + VD++ D E++ G D +M ++ G +V + R+
Sbjct: 782 LKTANSGYLTRRLVDVAQDVVITEDDCGTDTGILM---QPLIEGGDIVEPLH--ERVLGR 836
Query: 162 VGLGWVYAITKYEPIAKIADFVYSVWAK 189
V VY T+ EP+ K + W +
Sbjct: 837 VVASDVYIPTQTEPVVKAGTLLDEEWVE 864
>sp|A5IHS0|RPOC_LEGPC DNA-directed RNA polymerase subunit beta' OS=Legionella pneumophila
(strain Corby) GN=rpoC PE=3 SV=2
Length = 1401
Score = 33.5 bits (75), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 5/88 (5%)
Query: 102 LKERNKQYGTIKFVDISSDEYSIEENQGLDYKTVMGSIHAIVSDGTVVTDVEAFRRLYEE 161
LK N Y T + VD++ D E++ G D +M ++ G +V + R+
Sbjct: 782 LKTANSGYLTRRLVDVAQDVVITEDDCGTDTGILM---QPLIEGGDIVEPLH--ERVLGR 836
Query: 162 VGLGWVYAITKYEPIAKIADFVYSVWAK 189
V VY T+ EP+ K + W +
Sbjct: 837 VVASDVYIPTQTEPVVKAGTLLDEEWVE 864
>sp|Q5WZL8|RPOC_LEGPL DNA-directed RNA polymerase subunit beta' OS=Legionella pneumophila
(strain Lens) GN=rpoC PE=3 SV=1
Length = 1401
Score = 33.1 bits (74), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 5/88 (5%)
Query: 102 LKERNKQYGTIKFVDISSDEYSIEENQGLDYKTVMGSIHAIVSDGTVVTDVEAFRRLYEE 161
LK N Y T + VD++ D E++ G D +M ++ G +V + R+
Sbjct: 782 LKTANSGYLTRRLVDVAQDVVITEDDCGTDTGILM---QPLIEGGDIVEPLH--ERVLGR 836
Query: 162 VGLGWVYAITKYEPIAKIADFVYSVWAK 189
V VY T+ EP+ K + W +
Sbjct: 837 VVASDVYIPTQTEPVVKAGTLLDEEWVE 864
>sp|Q6FT93|UTP10_CANGA U3 small nucleolar RNA-associated protein 10 OS=Candida glabrata
(strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL
Y-65) GN=UTP10 PE=3 SV=1
Length = 1770
Score = 32.7 bits (73), Expect = 1.8, Method: Composition-based stats.
Identities = 20/105 (19%), Positives = 49/105 (46%), Gaps = 3/105 (2%)
Query: 72 EYDKDPSPENWKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSIEENQGLD 131
+YD+D E W+ ++ CP + +++ ++ +Y +++ S++E+ +
Sbjct: 1632 KYDRD---EYWQSTSRFELICPSLVNQLSNIEPTIGKYLVKAIGSLAAKNSSVDEHNQMM 1688
Query: 132 YKTVMGSIHAIVSDGTVVTDVEAFRRLYEEVGLGWVYAITKYEPI 176
K ++ + A S + V + +Y +VG W+ + + PI
Sbjct: 1689 NKLLVEHMKATCSSNEKLWAVRTVKLIYSKVGESWLVLLPQMVPI 1733
>sp|F4JLK2|SPSA4_ARATH Probable sucrose-phosphate synthase 4 OS=Arabidopsis thaliana GN=SPS4
PE=1 SV=1
Length = 1050
Score = 31.6 bits (70), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
Query: 93 PLCMREVNMLKERNKQYGTIKFVDISSDEYSIEENQGLDYKTVMGSIH-AIVSDGTVVTD 151
PLC + L+ + ++G +D+S + + E DY+ ++G +H I+ G V +D
Sbjct: 949 PLCASRIQALRYLSIRWG----IDMSKTVFFLGEKGDTDYEDLLGGLHKTIILKGVVGSD 1004
Query: 152 VEAFRRLYE 160
E R E
Sbjct: 1005 SEKLLRSEE 1013
>sp|Q05650|GLNA_BUTFI Glutamine synthetase OS=Butyrivibrio fibrisolvens GN=glnA PE=3 SV=1
Length = 700
Score = 31.6 bits (70), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 29/99 (29%), Positives = 43/99 (43%), Gaps = 25/99 (25%)
Query: 73 YDKDPSPENWKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSIEENQGL-- 130
Y+KD S E + K L DGDC C E+ +LK S D+ S E + L
Sbjct: 596 YEKDLSKEIVQKKSLLDGDC--CALELGVLK--------------SLDKSSAEMGKALSK 639
Query: 131 ---DYKTVMGSIHAIVS----DGTVVTDVEAFRRLYEEV 162
D K G A+ + + TV+ D++ R+ +E
Sbjct: 640 LFEDTKKAEGMTEALETASYYESTVLADMDELRKYADEA 678
>sp|Q9H7Z3|NRDE2_HUMAN Protein NRDE2 homolog OS=Homo sapiens GN=NRDE2 PE=1 SV=3
Length = 1164
Score = 31.6 bits (70), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 7/44 (15%)
Query: 48 HRSGYRNQIRAIQGATADPLTSKKEYDKDPSPENWKIKMLYDGD 91
HR + I+A+ G T DK P P NW+ K LY GD
Sbjct: 147 HRFVWLEDIQAVTGETF-------RTDKKPDPANWEYKSLYRGD 183
>sp|P79764|GLRX1_CHICK Glutaredoxin-1 OS=Gallus gallus GN=GLRX PE=3 SV=1
Length = 101
Score = 30.8 bits (68), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 83 KIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISS 119
K+ + G CP C + +LKE N G ++ VDI+
Sbjct: 14 KVTLFVKGSCPYCKNAIVLLKEFNFLPGCLEVVDITG 50
>sp|Q754J8|UTP10_ASHGO U3 small nucleolar RNA-associated protein 10 OS=Ashbya gossypii
(strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL
Y-1056) GN=UTP10 PE=3 SV=1
Length = 1774
Score = 30.4 bits (67), Expect = 8.2, Method: Composition-based stats.
Identities = 21/114 (18%), Positives = 54/114 (47%), Gaps = 3/114 (2%)
Query: 63 TADPLTSKKEYDKDPSPENWKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEY 122
T LT+ +YD+D E WK ++ + ++ +++ +Y ++S+
Sbjct: 1627 TLTALTASFKYDRD---EYWKSTARFELLAESLVNQLANIEDSIGKYLVKAIAALASNNA 1683
Query: 123 SIEENQGLDYKTVMGSIHAIVSDGTVVTDVEAFRRLYEEVGLGWVYAITKYEPI 176
++E+ L ++ ++ + A + + V+A + +Y +VG W+ + + P+
Sbjct: 1684 GVDEHSKLLHRALVEHMKASCATSQKLWAVKATKLIYAKVGEHWLVLLPQLVPV 1737
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.135 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,103,729
Number of Sequences: 539616
Number of extensions: 3150485
Number of successful extensions: 7480
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 7473
Number of HSP's gapped (non-prelim): 22
length of query: 206
length of database: 191,569,459
effective HSP length: 112
effective length of query: 94
effective length of database: 131,132,467
effective search space: 12326451898
effective search space used: 12326451898
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)