Query 028608
Match_columns 206
No_of_seqs 164 out of 886
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 14:10:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028608.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028608hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04134 DUF393: Protein of un 100.0 4.5E-29 9.7E-34 190.7 11.5 110 86-197 1-114 (114)
2 COG3011 Predicted thiol-disulf 100.0 9E-29 1.9E-33 197.2 11.9 123 77-203 3-127 (137)
3 TIGR02180 GRX_euk Glutaredoxin 96.4 0.011 2.4E-07 41.5 6.0 71 84-161 1-77 (84)
4 cd03027 GRX_DEP Glutaredoxin ( 96.1 0.031 6.6E-07 38.9 6.7 70 83-158 2-71 (73)
5 cd02066 GRX_family Glutaredoxi 96.0 0.05 1.1E-06 36.2 7.2 68 83-159 1-71 (72)
6 cd03419 GRX_GRXh_1_2_like Glut 95.7 0.035 7.7E-07 38.8 5.9 70 83-161 1-76 (82)
7 TIGR02190 GlrX-dom Glutaredoxi 95.4 0.18 3.9E-06 35.8 8.6 71 80-159 6-78 (79)
8 PHA03050 glutaredoxin; Provisi 95.0 0.12 2.5E-06 39.7 7.0 77 79-161 10-92 (108)
9 PRK10638 glutaredoxin 3; Provi 94.8 0.23 4.9E-06 35.5 7.7 73 83-161 3-75 (83)
10 cd03040 GST_N_mPGES2 GST_N fam 94.7 0.46 1E-05 32.9 8.9 70 83-161 1-74 (77)
11 cd03418 GRX_GRXb_1_3_like Glut 94.6 0.21 4.6E-06 34.3 7.0 70 83-160 1-73 (75)
12 PRK11200 grxA glutaredoxin 1; 94.2 0.31 6.8E-06 34.8 7.4 75 83-161 2-81 (85)
13 TIGR02200 GlrX_actino Glutared 94.0 0.26 5.6E-06 33.6 6.4 36 83-121 1-36 (77)
14 cd03041 GST_N_2GST_N GST_N fam 93.8 0.58 1.3E-05 32.7 8.0 72 84-161 2-75 (77)
15 cd02966 TlpA_like_family TlpA- 93.8 0.24 5.2E-06 35.2 6.0 42 80-121 19-62 (116)
16 TIGR02183 GRXA Glutaredoxin, G 93.0 0.73 1.6E-05 33.3 7.6 74 84-161 2-80 (86)
17 COG3019 Predicted metal-bindin 92.8 0.79 1.7E-05 37.3 8.0 109 79-194 23-139 (149)
18 TIGR02181 GRX_bact Glutaredoxi 92.7 0.63 1.4E-05 32.5 6.7 72 84-161 1-72 (79)
19 cd03029 GRX_hybridPRX5 Glutare 92.7 0.57 1.2E-05 32.3 6.3 68 83-159 2-71 (72)
20 cd03028 GRX_PICOT_like Glutare 92.7 0.64 1.4E-05 33.9 6.9 61 91-160 22-85 (90)
21 TIGR02189 GlrX-like_plant Glut 92.5 0.6 1.3E-05 34.9 6.7 79 79-161 5-84 (99)
22 PF13728 TraF: F plasmid trans 92.1 0.13 2.9E-06 43.9 3.1 39 79-118 119-157 (215)
23 cd03055 GST_N_Omega GST_N fami 92.0 0.9 1.9E-05 32.8 7.0 77 76-159 11-88 (89)
24 cd02973 TRX_GRX_like Thioredox 91.5 0.46 9.9E-06 32.0 4.7 36 83-118 2-37 (67)
25 PRK13703 conjugal pilus assemb 91.4 0.17 3.6E-06 44.6 2.9 38 80-118 143-180 (248)
26 TIGR02738 TrbB type-F conjugat 90.9 0.42 9E-06 38.8 4.6 29 79-107 49-77 (153)
27 TIGR00365 monothiol glutaredox 90.6 1.4 2.9E-05 32.8 6.8 63 90-161 25-90 (97)
28 TIGR02739 TraF type-F conjugat 90.5 0.24 5.1E-06 43.8 3.0 38 80-118 150-187 (256)
29 PRK10824 glutaredoxin-4; Provi 90.4 1.6 3.5E-05 34.0 7.3 74 79-161 12-93 (115)
30 PRK10329 glutaredoxin-like pro 90.3 1.5 3.2E-05 31.6 6.7 62 83-153 2-65 (81)
31 cd00570 GST_N_family Glutathio 90.2 1.1 2.4E-05 28.8 5.5 68 85-158 2-69 (71)
32 PRK10877 protein disulfide iso 90.2 0.5 1.1E-05 40.7 4.7 36 80-115 107-142 (232)
33 PF00578 AhpC-TSA: AhpC/TSA fa 90.0 0.77 1.7E-05 34.1 5.1 43 80-122 25-70 (124)
34 KOG1422 Intracellular Cl- chan 89.5 2.4 5.3E-05 36.7 8.2 94 88-189 17-111 (221)
35 PTZ00051 thioredoxin; Provisio 89.1 0.83 1.8E-05 32.7 4.5 64 82-149 20-84 (98)
36 PRK11657 dsbG disulfide isomer 89.0 0.7 1.5E-05 40.3 4.8 37 81-117 118-155 (251)
37 TIGR02196 GlrX_YruB Glutaredox 88.9 0.93 2E-05 30.1 4.4 62 83-153 1-65 (74)
38 cd02982 PDI_b'_family Protein 88.8 1.9 4.2E-05 31.0 6.4 57 81-137 13-71 (103)
39 cd03060 GST_N_Omega_like GST_N 88.6 4.3 9.2E-05 27.6 7.7 66 85-157 2-68 (71)
40 cd03056 GST_N_4 GST_N family, 88.6 2.6 5.6E-05 28.3 6.6 69 84-158 1-71 (73)
41 cd02967 mauD Methylamine utili 88.6 2 4.4E-05 31.5 6.5 38 81-118 22-60 (114)
42 cd03045 GST_N_Delta_Epsilon GS 88.4 3.2 6.9E-05 28.1 7.0 70 84-159 1-72 (74)
43 cd03037 GST_N_GRX2 GST_N famil 88.0 4.7 0.0001 27.3 7.6 67 85-159 2-69 (71)
44 PRK13728 conjugal transfer pro 87.8 0.61 1.3E-05 39.2 3.5 55 62-118 52-106 (181)
45 cd03023 DsbA_Com1_like DsbA fa 87.7 0.92 2E-05 34.6 4.3 38 80-117 5-44 (154)
46 cd03020 DsbA_DsbC_DsbG DsbA fa 87.2 1 2.2E-05 37.2 4.4 37 80-117 77-113 (197)
47 cd03059 GST_N_SspA GST_N famil 86.7 6.6 0.00014 26.3 7.7 70 84-160 1-70 (73)
48 cd01659 TRX_superfamily Thiore 86.6 0.99 2.1E-05 27.5 3.2 38 84-121 1-40 (69)
49 TIGR00411 redox_disulf_1 small 86.6 1.6 3.5E-05 30.0 4.7 49 83-131 2-52 (82)
50 PRK03147 thiol-disulfide oxido 86.0 2.6 5.6E-05 33.3 6.1 38 82-119 63-102 (173)
51 PF00085 Thioredoxin: Thioredo 86.0 1.5 3.3E-05 31.0 4.4 51 81-131 18-70 (103)
52 PRK15412 thiol:disulfide inter 85.9 5.2 0.00011 32.8 8.0 35 82-118 70-104 (185)
53 PF13098 Thioredoxin_2: Thiore 85.9 0.8 1.7E-05 33.6 2.9 24 81-104 6-29 (112)
54 cd02961 PDI_a_family Protein D 85.8 2 4.3E-05 29.8 4.8 61 82-145 17-81 (101)
55 cd03051 GST_N_GTT2_like GST_N 85.5 5.8 0.00013 26.4 6.9 67 85-158 2-72 (74)
56 TIGR02194 GlrX_NrdH Glutaredox 85.3 3.7 8E-05 28.2 5.9 34 85-121 2-35 (72)
57 cd02949 TRX_NTR TRX domain, no 85.0 4.5 9.7E-05 29.2 6.5 65 81-149 14-80 (97)
58 TIGR02740 TraF-like TraF-like 84.8 3.2 6.9E-05 36.7 6.7 40 80-119 166-206 (271)
59 cd02968 SCO SCO (an acronym fo 84.4 3 6.5E-05 31.7 5.6 39 81-119 23-67 (142)
60 cd02976 NrdH NrdH-redoxin (Nrd 84.3 4.5 9.7E-05 26.6 5.9 65 84-154 2-66 (73)
61 TIGR01126 pdi_dom protein disu 84.1 1.7 3.8E-05 30.8 3.9 70 80-152 13-88 (102)
62 PTZ00062 glutaredoxin; Provisi 84.0 4 8.6E-05 34.8 6.7 73 79-160 110-190 (204)
63 cd03061 GST_N_CLIC GST_N famil 83.5 3.7 8.1E-05 30.6 5.5 66 90-162 20-85 (91)
64 cd03026 AhpF_NTD_C TRX-GRX-lik 82.8 2.4 5.3E-05 31.0 4.3 49 83-131 15-64 (89)
65 cd03052 GST_N_GDAP1 GST_N fami 82.0 7.2 0.00016 27.1 6.3 69 85-159 2-72 (73)
66 PRK12759 bifunctional gluaredo 82.0 17 0.00037 34.0 10.6 72 83-157 3-79 (410)
67 cd02972 DsbA_family DsbA famil 81.7 2.3 5E-05 29.3 3.7 22 84-105 1-22 (98)
68 cd02984 TRX_PICOT TRX domain, 81.4 9.1 0.0002 27.0 6.9 65 80-148 14-80 (97)
69 cd02995 PDI_a_PDI_a'_C PDIa fa 81.1 3.8 8.1E-05 29.2 4.8 39 82-120 20-61 (104)
70 cd03036 ArsC_like Arsenate Red 81.0 2.8 6E-05 31.9 4.2 35 84-121 1-35 (111)
71 PF13417 GST_N_3: Glutathione 80.8 9.8 0.00021 26.2 6.7 69 86-162 1-70 (75)
72 cd03053 GST_N_Phi GST_N family 80.7 11 0.00024 25.6 6.9 71 84-160 2-74 (76)
73 TIGR02187 GlrX_arch Glutaredox 80.7 5.6 0.00012 33.4 6.3 68 82-153 135-203 (215)
74 cd03004 PDI_a_ERdj5_C PDIa fam 79.7 4.1 8.9E-05 29.5 4.6 49 82-130 21-71 (104)
75 cd02989 Phd_like_TxnDC9 Phosdu 79.3 4 8.7E-05 30.9 4.6 66 81-150 23-89 (113)
76 cd02975 PfPDO_like_N Pyrococcu 78.7 5.3 0.00011 30.2 5.1 48 83-130 24-73 (113)
77 PRK01655 spxA transcriptional 78.5 5 0.00011 31.5 5.0 35 84-121 2-36 (131)
78 cd02950 TxlA TRX-like protein 78.3 10 0.00023 29.8 6.9 65 82-149 22-90 (142)
79 cd03032 ArsC_Spx Arsenate Redu 77.9 5.7 0.00012 30.2 5.1 34 84-120 2-35 (115)
80 cd02947 TRX_family TRX family; 77.8 4.9 0.00011 27.0 4.3 49 82-130 12-61 (93)
81 cd02957 Phd_like Phosducin (Ph 77.5 5.1 0.00011 29.9 4.7 66 82-151 26-91 (113)
82 PF13409 GST_N_2: Glutathione 76.4 9.7 0.00021 26.0 5.5 67 91-161 1-69 (70)
83 TIGR01617 arsC_related transcr 75.9 5.5 0.00012 30.3 4.5 35 84-121 1-35 (117)
84 PF13462 Thioredoxin_4: Thiore 75.8 3.5 7.6E-05 31.9 3.5 24 81-104 13-36 (162)
85 TIGR00385 dsbE periplasmic pro 75.6 19 0.00041 29.0 7.8 35 82-118 65-99 (173)
86 PF13905 Thioredoxin_8: Thiore 75.0 3.2 6.8E-05 29.5 2.8 39 83-121 4-45 (95)
87 cd03031 GRX_GRX_like Glutaredo 74.8 23 0.00049 28.7 8.0 66 91-161 15-83 (147)
88 cd02977 ArsC_family Arsenate R 74.7 5.4 0.00012 29.6 4.1 34 84-120 1-34 (105)
89 COG4545 Glutaredoxin-related p 74.2 1.2 2.6E-05 32.7 0.4 38 83-123 3-40 (85)
90 cd03054 GST_N_Metaxin GST_N fa 73.7 18 0.00039 24.4 6.3 56 91-160 15-70 (72)
91 PTZ00056 glutathione peroxidas 73.3 16 0.00036 30.4 7.1 37 82-118 41-79 (199)
92 PF01323 DSBA: DSBA-like thior 73.0 3.5 7.6E-05 33.0 2.9 37 83-119 1-39 (193)
93 cd03001 PDI_a_P5 PDIa family, 72.8 7.9 0.00017 27.6 4.5 49 82-130 20-70 (103)
94 cd03039 GST_N_Sigma_like GST_N 72.4 26 0.00057 23.5 7.1 70 84-159 1-70 (72)
95 cd02948 TRX_NDPK TRX domain, T 72.2 30 0.00065 25.2 7.6 63 82-148 19-83 (102)
96 cd02956 ybbN ybbN protein fami 72.1 18 0.0004 25.5 6.3 63 82-148 14-78 (96)
97 cd03050 GST_N_Theta GST_N fami 71.8 26 0.00057 23.8 6.8 71 84-160 1-73 (76)
98 cd03049 GST_N_3 GST_N family, 71.5 22 0.00047 24.0 6.3 70 84-158 1-71 (73)
99 cd03080 GST_N_Metaxin_like GST 71.1 30 0.00066 23.6 7.4 57 91-161 16-72 (75)
100 TIGR01068 thioredoxin thioredo 71.0 7.1 0.00015 27.3 3.8 64 81-148 15-80 (101)
101 cd02998 PDI_a_ERp38 PDIa famil 70.7 9.1 0.0002 27.1 4.4 49 82-130 20-73 (105)
102 cd02970 PRX_like2 Peroxiredoxi 70.2 7.3 0.00016 29.6 4.0 40 83-122 26-68 (149)
103 cd03010 TlpA_like_DsbE TlpA-li 70.2 5.9 0.00013 29.7 3.5 37 82-119 27-63 (127)
104 cd02987 Phd_like_Phd Phosducin 70.1 23 0.0005 29.1 7.2 66 82-151 85-150 (175)
105 PRK09381 trxA thioredoxin; Pro 69.9 18 0.00039 26.3 5.9 64 81-149 22-88 (109)
106 PRK12559 transcriptional regul 69.8 9.8 0.00021 30.0 4.7 35 84-121 2-36 (131)
107 PRK10996 thioredoxin 2; Provis 69.7 24 0.00052 27.5 6.9 64 82-149 54-119 (139)
108 cd02999 PDI_a_ERp44_like PDIa 69.5 7.1 0.00015 28.8 3.7 40 80-119 18-57 (100)
109 cd03003 PDI_a_ERdj5_N PDIa fam 69.4 11 0.00023 27.2 4.6 49 82-130 20-70 (101)
110 TIGR01295 PedC_BrcD bacterioci 69.0 40 0.00086 25.9 7.9 37 83-119 26-63 (122)
111 PRK10387 glutaredoxin 2; Provi 68.8 35 0.00075 27.6 8.0 71 84-162 1-72 (210)
112 cd02971 PRX_family Peroxiredox 68.6 7.2 0.00016 29.4 3.7 41 82-122 24-67 (140)
113 PF06200 tify: tify domain; I 68.5 4.6 9.9E-05 25.3 2.0 19 78-96 2-20 (36)
114 PF00462 Glutaredoxin: Glutare 67.7 11 0.00023 24.8 4.0 35 84-121 1-35 (60)
115 PF08534 Redoxin: Redoxin; In 67.2 7.8 0.00017 29.7 3.6 24 82-105 30-54 (146)
116 cd03035 ArsC_Yffb Arsenate Red 66.7 11 0.00025 28.4 4.3 35 84-121 1-35 (105)
117 cd02996 PDI_a_ERp44 PDIa famil 65.6 14 0.0003 27.0 4.6 49 82-130 20-76 (108)
118 cd00340 GSH_Peroxidase Glutath 65.5 8.5 0.00019 30.2 3.6 37 82-119 24-62 (152)
119 PRK15113 glutathione S-transfe 65.3 42 0.00092 27.6 8.0 76 83-162 5-82 (214)
120 TIGR02182 GRXB Glutaredoxin, G 65.1 33 0.00072 28.3 7.3 69 86-162 2-71 (209)
121 cd03002 PDI_a_MPD1_like PDI fa 65.0 12 0.00026 27.0 4.1 38 82-119 20-60 (109)
122 cd03005 PDI_a_ERp46 PDIa famil 63.2 10 0.00023 26.9 3.4 37 83-119 19-59 (102)
123 cd03019 DsbA_DsbA DsbA family, 63.1 8.6 0.00019 30.3 3.2 26 80-105 15-40 (178)
124 PRK13344 spxA transcriptional 62.8 16 0.00034 28.8 4.6 35 84-121 2-36 (132)
125 PRK10382 alkyl hydroperoxide r 62.2 23 0.0005 29.4 5.8 24 82-105 33-57 (187)
126 cd03014 PRX_Atyp2cys Peroxired 62.1 13 0.00028 28.4 4.0 40 82-121 28-68 (143)
127 cd03034 ArsC_ArsC Arsenate Red 62.0 15 0.00032 27.9 4.2 35 84-121 1-35 (112)
128 PF13192 Thioredoxin_3: Thiore 61.9 51 0.0011 22.9 6.9 66 84-158 3-71 (76)
129 TIGR03137 AhpC peroxiredoxin. 61.8 18 0.00038 29.7 5.0 23 83-105 34-57 (187)
130 cd02969 PRX_like1 Peroxiredoxi 61.0 11 0.00024 30.0 3.5 40 81-120 26-67 (171)
131 TIGR00014 arsC arsenate reduct 60.9 16 0.00034 27.9 4.2 35 84-121 1-35 (114)
132 TIGR02187 GlrX_arch Glutaredox 60.9 19 0.00042 30.1 5.2 49 82-130 21-75 (215)
133 cd02997 PDI_a_PDIR PDIa family 60.0 9.2 0.0002 27.2 2.7 37 82-118 19-58 (104)
134 cd03018 PRX_AhpE_like Peroxire 60.0 11 0.00025 28.8 3.3 39 83-121 31-72 (149)
135 cd03012 TlpA_like_DipZ_like Tl 59.8 15 0.00033 27.7 4.0 38 82-119 25-64 (126)
136 PLN02817 glutathione dehydroge 59.6 29 0.00062 30.4 6.2 67 89-162 70-136 (265)
137 PHA02125 thioredoxin-like prot 58.2 28 0.0006 24.0 4.8 42 84-130 2-44 (75)
138 cd03044 GST_N_EF1Bgamma GST_N 57.3 51 0.0011 22.4 6.0 71 85-161 2-74 (75)
139 cd03042 GST_N_Zeta GST_N famil 56.5 55 0.0012 21.6 6.2 69 85-159 2-72 (73)
140 TIGR02661 MauD methylamine deh 55.2 15 0.00033 30.1 3.6 24 83-106 77-100 (189)
141 cd03011 TlpA_like_ScsD_MtbDsbE 55.2 11 0.00024 27.8 2.5 27 81-107 21-47 (123)
142 cd03076 GST_N_Pi GST_N family, 53.5 68 0.0015 21.7 6.6 69 84-159 2-70 (73)
143 cd03033 ArsC_15kD Arsenate Red 53.2 25 0.00055 26.9 4.2 35 84-121 2-36 (113)
144 cd02963 TRX_DnaJ TRX domain, D 53.0 21 0.00045 26.6 3.7 66 80-149 24-92 (111)
145 TIGR00862 O-ClC intracellular 52.4 66 0.0014 27.8 7.1 66 90-162 17-82 (236)
146 cd03000 PDI_a_TMX3 PDIa family 52.3 14 0.00031 26.8 2.6 24 82-105 17-40 (104)
147 cd02988 Phd_like_VIAF Phosduci 51.8 18 0.0004 30.2 3.5 61 83-149 105-165 (192)
148 cd02951 SoxW SoxW family; SoxW 51.2 16 0.00034 27.5 2.8 22 81-102 15-36 (125)
149 cd02985 TRX_CDSP32 TRX family, 49.9 24 0.00052 25.8 3.5 63 82-148 17-83 (103)
150 PLN02412 probable glutathione 49.7 23 0.0005 28.5 3.7 37 83-119 32-70 (167)
151 cd03022 DsbA_HCCA_Iso DsbA fam 49.0 17 0.00038 28.9 2.9 36 84-119 1-37 (192)
152 PHA02540 61 DNA primase; Provi 48.8 31 0.00068 31.7 4.7 74 81-160 256-333 (337)
153 PRK10026 arsenate reductase; P 48.1 37 0.00081 27.3 4.6 37 82-121 2-38 (141)
154 cd02959 ERp19 Endoplasmic reti 47.9 57 0.0012 24.7 5.5 66 83-149 22-90 (117)
155 PRK09481 sspA stringent starva 47.7 1.3E+02 0.0027 24.7 7.9 73 83-162 10-82 (211)
156 TIGR03759 conj_TIGR03759 integ 47.7 82 0.0018 27.0 6.8 65 80-145 108-175 (200)
157 COG1651 DsbG Protein-disulfide 47.5 38 0.00082 28.5 4.9 25 81-105 85-109 (244)
158 cd02994 PDI_a_TMX PDIa family, 47.4 26 0.00057 25.0 3.4 36 83-118 19-56 (101)
159 COG1393 ArsC Arsenate reductas 46.9 41 0.00089 26.1 4.6 35 83-120 2-36 (117)
160 PLN02378 glutathione S-transfe 46.8 87 0.0019 25.8 6.9 66 90-162 18-83 (213)
161 PF05768 DUF836: Glutaredoxin- 46.7 97 0.0021 21.7 6.2 47 83-130 1-48 (81)
162 TIGR00412 redox_disulf_2 small 46.3 50 0.0011 23.0 4.6 36 85-120 3-39 (76)
163 cd03021 DsbA_GSTK DsbA family, 45.8 31 0.00067 28.6 4.0 36 83-118 2-38 (209)
164 PLN02473 glutathione S-transfe 45.1 97 0.0021 25.2 6.8 75 84-162 3-77 (214)
165 cd03024 DsbA_FrnE DsbA family, 44.9 26 0.00055 28.3 3.3 34 84-117 1-39 (201)
166 PRK11752 putative S-transferas 44.5 1.9E+02 0.0041 25.0 8.8 103 47-162 17-128 (264)
167 cd03077 GST_N_Alpha GST_N fami 42.7 1.1E+02 0.0024 21.1 7.8 72 84-161 2-74 (79)
168 COG0695 GrxC Glutaredoxin and 42.7 1E+02 0.0022 21.8 5.8 67 85-159 4-74 (80)
169 cd02992 PDI_a_QSOX PDIa family 42.6 30 0.00064 26.0 3.1 37 82-118 21-61 (114)
170 cd02954 DIM1 Dim1 family; Dim1 42.4 59 0.0013 25.1 4.8 63 83-149 17-81 (114)
171 PRK10954 periplasmic protein d 41.9 25 0.00055 29.2 2.9 19 81-99 38-56 (207)
172 cd03038 GST_N_etherase_LigE GS 41.6 1.2E+02 0.0025 21.0 6.4 67 89-161 13-81 (84)
173 COG0625 Gst Glutathione S-tran 41.6 1E+02 0.0022 25.1 6.4 74 84-162 1-75 (211)
174 cd03009 TryX_like_TryX_NRX Try 41.1 32 0.00069 25.9 3.1 24 82-105 20-43 (131)
175 PRK10853 putative reductase; P 40.7 46 0.001 25.6 4.0 35 84-121 2-36 (118)
176 PRK00522 tpx lipid hydroperoxi 40.6 42 0.00091 26.9 3.9 40 82-121 46-86 (167)
177 cd02962 TMX2 TMX2 family; comp 40.6 1.1E+02 0.0023 24.7 6.2 48 84-131 51-101 (152)
178 COG2999 GrxB Glutaredoxin 2 [P 40.3 19 0.00042 30.7 1.9 16 85-101 3-18 (215)
179 cd03058 GST_N_Tau GST_N family 39.6 1.2E+02 0.0025 20.4 8.3 70 85-160 2-71 (74)
180 TIGR01616 nitro_assoc nitrogen 38.0 64 0.0014 25.3 4.4 36 83-121 2-37 (126)
181 PF04423 Rad50_zn_hook: Rad50 37.3 8.4 0.00018 25.5 -0.6 11 89-99 20-30 (54)
182 cd03048 GST_N_Ure2p_like GST_N 36.9 1.4E+02 0.0029 20.4 6.7 71 87-161 4-77 (81)
183 cd03016 PRX_1cys Peroxiredoxin 35.0 88 0.0019 25.9 5.1 19 87-105 33-51 (203)
184 PTZ00443 Thioredoxin domain-co 34.8 1.1E+02 0.0023 26.4 5.7 64 82-149 54-119 (224)
185 cd03006 PDI_a_EFP1_N PDIa fami 33.6 77 0.0017 24.1 4.2 41 80-120 29-70 (113)
186 PLN00410 U5 snRNP protein, DIM 32.7 2.4E+02 0.0051 22.7 7.0 61 83-147 26-89 (142)
187 PF03960 ArsC: ArsC family; I 32.3 92 0.002 23.2 4.4 32 87-121 1-32 (110)
188 cd03017 PRX_BCP Peroxiredoxin 31.8 74 0.0016 23.8 3.8 41 82-122 25-68 (140)
189 cd03025 DsbA_FrnE_like DsbA fa 31.5 36 0.00078 27.1 2.1 24 83-106 2-25 (193)
190 PTZ00102 disulphide isomerase; 30.7 99 0.0021 28.5 5.1 78 82-162 51-137 (477)
191 cd02955 SSP411 TRX domain, SSP 30.5 1.7E+02 0.0037 22.6 5.7 17 84-100 19-35 (124)
192 PF03227 GILT: Gamma interfero 29.6 45 0.00097 25.1 2.2 19 83-101 2-20 (108)
193 cd00158 RHOD Rhodanese Homolog 29.1 1.4E+02 0.003 20.0 4.6 36 78-115 46-81 (89)
194 KOG4172 Predicted E3 ubiquitin 28.8 41 0.00089 23.3 1.7 16 89-104 43-58 (62)
195 KOG3160 Gamma-interferon induc 27.4 57 0.0012 28.3 2.7 22 80-101 39-60 (220)
196 PTZ00256 glutathione peroxidas 27.4 68 0.0015 26.1 3.1 33 86-118 47-81 (183)
197 cd02993 PDI_a_APS_reductase PD 27.4 75 0.0016 23.3 3.1 39 81-119 22-62 (109)
198 cd03079 GST_N_Metaxin2 GST_N f 27.1 2.3E+02 0.005 20.1 6.8 63 83-160 10-72 (74)
199 cd03008 TryX_like_RdCVF Trypar 27.0 1.1E+02 0.0024 24.5 4.2 38 83-120 28-74 (146)
200 PF06053 DUF929: Domain of unk 26.4 98 0.0021 27.4 4.1 43 78-121 54-99 (249)
201 cd02953 DsbDgamma DsbD gamma f 26.0 1.1E+02 0.0024 21.8 3.8 62 82-148 13-86 (104)
202 KOG3029 Glutathione S-transfer 23.6 2.6E+02 0.0057 25.7 6.3 71 82-161 89-159 (370)
203 smart00450 RHOD Rhodanese Homo 23.0 2.4E+02 0.0051 19.0 4.9 34 80-115 54-87 (100)
204 PF05988 DUF899: Bacterial pro 23.0 1.6E+02 0.0034 25.5 4.6 14 89-102 82-95 (211)
205 cd02986 DLP Dim1 family, Dim1- 23.0 1.9E+02 0.0041 22.5 4.7 46 84-130 18-66 (114)
206 TIGR01130 ER_PDI_fam protein d 22.9 1.6E+02 0.0036 26.6 5.0 47 84-130 22-73 (462)
207 KOG1493 Anaphase-promoting com 22.6 29 0.00062 25.6 0.0 12 85-96 27-38 (84)
208 PLN02399 phospholipid hydroper 22.6 89 0.0019 27.1 3.1 37 82-118 101-139 (236)
209 cd03046 GST_N_GTT1_like GST_N 22.5 2.4E+02 0.0051 18.6 7.2 24 138-161 50-73 (76)
210 PTZ00062 glutaredoxin; Provisi 21.5 5E+02 0.011 22.0 9.9 103 83-202 19-129 (204)
211 PF14595 Thioredoxin_9: Thiore 21.0 2.2E+02 0.0047 22.2 4.7 40 79-118 40-79 (129)
212 PRK09437 bcp thioredoxin-depen 20.8 1.2E+02 0.0026 23.4 3.3 39 84-122 33-75 (154)
213 KOG4578 Uncharacterized conser 20.5 1.3E+02 0.0028 28.2 3.7 67 80-153 65-133 (421)
214 KOG0191 Thioredoxin/protein di 20.4 1.5E+02 0.0033 26.9 4.3 52 79-130 46-99 (383)
No 1
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=99.96 E-value=4.5e-29 Score=190.74 Aligned_cols=110 Identities=32% Similarity=0.587 Sum_probs=100.8
Q ss_pred EEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhH-HHhCCCChhcccceEEEEEeCCe-EEehHHHHHHHHHHcC
Q 028608 86 MLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSI-EENQGLDYKTVMGSIHAIVSDGT-VVTDVEAFRRLYEEVG 163 (206)
Q Consensus 86 VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~~-l~~~gld~e~~~~~lhvv~~dG~-v~~G~dA~~~il~~lp 163 (206)
|||||+||||++++++++++|. .+.|+|+|+|++.... ++..|++.|++++.+|+ +++|+ ++.|++|++++++.++
T Consensus 1 v~YDg~C~lC~~~~~~l~~~d~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~g~~~~~G~~A~~~l~~~~~ 78 (114)
T PF04134_consen 1 VFYDGDCPLCRREVRFLRRRDR-GGRLRFVDIQSEPDQALLASYGISPEDADSRLHL-IDDGERVYRGSDAVLRLLRRLP 78 (114)
T ss_pred CEECCCCHhHHHHHHHHHhcCC-CCCEEEEECCChhhhhHHHhcCcCHHHHcCeeEE-ecCCCEEEEcHHHHHHHHHHcC
Confidence 7999999999999999999986 7999999998887765 56899999999999999 77886 9999999999999998
Q ss_pred c--hhhhhhhcccchhhHHHHHHHHHHhhcccccCC
Q 028608 164 L--GWVYAITKYEPIAKIADFVYSVWAKYRLQITGK 197 (206)
Q Consensus 164 ~--~w~~~ll~l~pv~~l~d~~Yr~VArnR~ri~Gr 197 (206)
. +|+..++.+|++++++|++|++||+||++|+||
T Consensus 79 ~~~~~l~~l~~lp~~~~l~~~~Y~~iA~~R~~~~gr 114 (114)
T PF04134_consen 79 GPWRWLAWLLRLPGIRPLADRLYRWIARNRYRWFGR 114 (114)
T ss_pred cchHHHHHHHHcccHHHHHHHHHHHHHhhHhhhhCc
Confidence 6 555678899999999999999999999999997
No 2
>COG3011 Predicted thiol-disulfide oxidoreductase [General function prediction only]
Probab=99.96 E-value=9e-29 Score=197.25 Aligned_cols=123 Identities=27% Similarity=0.389 Sum_probs=109.3
Q ss_pred CCCCCCceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhH-HHhCCCChhcccceEEEEEeCCeEEehHHHH
Q 028608 77 PSPENWKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSI-EENQGLDYKTVMGSIHAIVSDGTVVTDVEAF 155 (206)
Q Consensus 77 ~~~~~~~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~~-l~~~gld~e~~~~~lhvv~~dG~v~~G~dA~ 155 (206)
++.+.+.++|+|||.|+||..+|+||.++|. .++|+|.++|++.+.. ++..|+++|... .|+.+++|+.+.|+||+
T Consensus 3 ~~~~~p~~vvlyDG~C~lC~~~vrfLi~~D~-~~~i~f~~~q~e~g~~~l~~~~l~~~~~~--s~~~~~~g~~~~~sdA~ 79 (137)
T COG3011 3 PQMKKPDLVVLYDGVCPLCDGWVRFLIRRDQ-GGRIRFAALQSEPGQALLEAAGLDPEDVD--SVLLVEAGQLLVGSDAA 79 (137)
T ss_pred CCCCCCCEEEEECCcchhHHHHHHHHHHhcc-CCcEEEEeccCchhhhHHhhcCCChhhhh--eeeEecCCceEeccHHH
Confidence 3456678899999999999999999999997 7999999999999887 778899998843 56778999999999999
Q ss_pred HHHHHHcCchhhhh-hhcccchhhHHHHHHHHHHhhcccccCCCCcCcc
Q 028608 156 RRLYEEVGLGWVYA-ITKYEPIAKIADFVYSVWAKYRLQITGKFMHYKE 203 (206)
Q Consensus 156 ~~il~~lp~~w~~~-ll~l~pv~~l~d~~Yr~VArnR~ri~Gr~~~C~~ 203 (206)
+++++.++.+|++. .+...| +|++|.+|++||+|||+|||+.+.|..
T Consensus 80 ~~i~~~L~~~Wr~~~~~~~lp-~plrD~~Y~~~A~nRyrwfGr~~~~~~ 127 (137)
T COG3011 80 IRILRLLPGPWRLLVWLWILP-RPLRDRVYDFFADNRYRWFGRKDQCEL 127 (137)
T ss_pred HHHHHHCCcceeeeehhhccc-hHHHHHHHHHHHHhhhhhcCccccccc
Confidence 99999999999864 455566 999999999999999999999998864
No 3
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=96.42 E-value=0.011 Score=41.46 Aligned_cols=71 Identities=17% Similarity=0.334 Sum_probs=48.5
Q ss_pred eEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhH-----H-HhCCCChhcccceEEEEEeCCeEEehHHHHHH
Q 028608 84 IKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSI-----E-ENQGLDYKTVMGSIHAIVSDGTVVTDVEAFRR 157 (206)
Q Consensus 84 l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~~-----l-~~~gld~e~~~~~lhvv~~dG~v~~G~dA~~~ 157 (206)
+++|+-.+||.|.+...+|.++.. ...+.+++++...... + +..|. ..+-.+.-+|+...|.+-+++
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~i-~~~~~~~~v~~~~~~~~~~~~l~~~~g~------~~vP~v~i~g~~igg~~~~~~ 73 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLNV-KPAYEVVELDQLSNGSEIQDYLEEITGQ------RTVPNIFINGKFIGGCSDLLA 73 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcCC-CCCCEEEEeeCCCChHHHHHHHHHHhCC------CCCCeEEECCEEEcCHHHHHH
Confidence 478999999999999999998864 3447888877542111 1 11122 122334458999999999998
Q ss_pred HHHH
Q 028608 158 LYEE 161 (206)
Q Consensus 158 il~~ 161 (206)
+...
T Consensus 74 ~~~~ 77 (84)
T TIGR02180 74 LYKS 77 (84)
T ss_pred HHHc
Confidence 8764
No 4
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=96.08 E-value=0.031 Score=38.94 Aligned_cols=70 Identities=13% Similarity=0.147 Sum_probs=47.4
Q ss_pred ceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhHHHhCCCChhcccceEEEEEeCCeEEehHHHHHHH
Q 028608 83 KIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSIEENQGLDYKTVMGSIHAIVSDGTVVTDVEAFRRL 158 (206)
Q Consensus 83 ~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~~l~~~gld~e~~~~~lhvv~~dG~v~~G~dA~~~i 158 (206)
+++||.=..||.|.+...+|.+++. .+.++++..+.....+...+... ..+-++--||+.+.|.+.+..+
T Consensus 2 ~v~ly~~~~C~~C~ka~~~L~~~gi---~~~~~di~~~~~~~~el~~~~g~---~~vP~v~i~~~~iGg~~~~~~~ 71 (73)
T cd03027 2 RVTIYSRLGCEDCTAVRLFLREKGL---PYVEINIDIFPERKAELEERTGS---SVVPQIFFNEKLVGGLTDLKSL 71 (73)
T ss_pred EEEEEecCCChhHHHHHHHHHHCCC---ceEEEECCCCHHHHHHHHHHhCC---CCcCEEEECCEEEeCHHHHHhh
Confidence 5788888899999999999998753 58888998754321111111111 2233445689999999988764
No 5
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=95.99 E-value=0.05 Score=36.18 Aligned_cols=68 Identities=19% Similarity=0.362 Sum_probs=46.5
Q ss_pred ceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhh-H-HHh-CCCChhcccceEEEEEeCCeEEehHHHHHHHH
Q 028608 83 KIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYS-I-EEN-QGLDYKTVMGSIHAIVSDGTVVTDVEAFRRLY 159 (206)
Q Consensus 83 ~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~-~-l~~-~gld~e~~~~~lhvv~~dG~v~~G~dA~~~il 159 (206)
++++|.-..||.|.....+|.+.. -.+..+++..+... . +.. .|. ..+-++-.+|+.+.|++.+.++.
T Consensus 1 ~v~ly~~~~Cp~C~~~~~~L~~~~---i~~~~~di~~~~~~~~~l~~~~~~------~~~P~~~~~~~~igg~~~~~~~~ 71 (72)
T cd02066 1 KVVVFSKSTCPYCKRAKRLLESLG---IEFEEIDILEDGELREELKELSGW------PTVPQIFINGEFIGGYDDLKALH 71 (72)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcC---CcEEEEECCCCHHHHHHHHHHhCC------CCcCEEEECCEEEecHHHHHHhh
Confidence 467888899999999999998875 35778888775432 1 111 111 12323445899999999887653
No 6
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=95.74 E-value=0.035 Score=38.80 Aligned_cols=70 Identities=19% Similarity=0.336 Sum_probs=47.0
Q ss_pred ceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhh-H----H-HhCCCChhcccceEEEEEeCCeEEehHHHHH
Q 028608 83 KIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYS-I----E-ENQGLDYKTVMGSIHAIVSDGTVVTDVEAFR 156 (206)
Q Consensus 83 ~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~-~----l-~~~gld~e~~~~~lhvv~~dG~v~~G~dA~~ 156 (206)
++++|+-.+||.|.....+|.++.. .+.+++++..... . + +..|. ..+-++--+|+.+.|.+-+.
T Consensus 1 ~v~~y~~~~Cp~C~~~~~~l~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~g~------~~~P~v~~~g~~igg~~~~~ 71 (82)
T cd03419 1 PVVVFSKSYCPYCKRAKSLLKELGV---KPAVVELDQHEDGSEIQDYLQELTGQ------RTVPNVFIGGKFIGGCDDLM 71 (82)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHcCC---CcEEEEEeCCCChHHHHHHHHHHhCC------CCCCeEEECCEEEcCHHHHH
Confidence 4688899999999999999998754 4666666654321 1 1 11121 12223345899999999998
Q ss_pred HHHHH
Q 028608 157 RLYEE 161 (206)
Q Consensus 157 ~il~~ 161 (206)
.+...
T Consensus 72 ~~~~~ 76 (82)
T cd03419 72 ALHKS 76 (82)
T ss_pred HHHHc
Confidence 88764
No 7
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=95.39 E-value=0.18 Score=35.77 Aligned_cols=71 Identities=13% Similarity=0.315 Sum_probs=49.8
Q ss_pred CCCceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhH-HH-hCCCChhcccceEEEEEeCCeEEehHHHHHH
Q 028608 80 ENWKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSI-EE-NQGLDYKTVMGSIHAIVSDGTVVTDVEAFRR 157 (206)
Q Consensus 80 ~~~~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~~-l~-~~gld~e~~~~~lhvv~~dG~v~~G~dA~~~ 157 (206)
.+.+++||.=..||+|.+..++|.+++. .+..+++..+.... +. ..| ...+-++.-||+.+.|++.+..
T Consensus 6 ~~~~V~ly~~~~Cp~C~~ak~~L~~~gi---~y~~idi~~~~~~~~~~~~~g------~~~vP~i~i~g~~igG~~~l~~ 76 (79)
T TIGR02190 6 KPESVVVFTKPGCPFCAKAKATLKEKGY---DFEEIPLGNDARGRSLRAVTG------ATTVPQVFIGGKLIGGSDELEA 76 (79)
T ss_pred CCCCEEEEECCCCHhHHHHHHHHHHcCC---CcEEEECCCChHHHHHHHHHC------CCCcCeEEECCEEEcCHHHHHH
Confidence 4567899999999999999999987643 46777887653322 11 111 1234455669999999998876
Q ss_pred HH
Q 028608 158 LY 159 (206)
Q Consensus 158 il 159 (206)
.+
T Consensus 77 ~l 78 (79)
T TIGR02190 77 YL 78 (79)
T ss_pred Hh
Confidence 54
No 8
>PHA03050 glutaredoxin; Provisional
Probab=95.04 E-value=0.12 Score=39.67 Aligned_cols=77 Identities=17% Similarity=0.229 Sum_probs=51.8
Q ss_pred CCCCceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhh----hH-H-HhCCCChhcccceEEEEEeCCeEEehH
Q 028608 79 PENWKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEY----SI-E-ENQGLDYKTVMGSIHAIVSDGTVVTDV 152 (206)
Q Consensus 79 ~~~~~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~----~~-l-~~~gld~e~~~~~lhvv~~dG~v~~G~ 152 (206)
....+++||-=.+||+|.+..++|.+.......+..+++..... .. + +..|- ..+-.+.-+|+.+.|.
T Consensus 10 i~~~~V~vys~~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG~------~tVP~IfI~g~~iGG~ 83 (108)
T PHA03050 10 LANNKVTIFVKFTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGG------RTVPRIFFGKTSIGGY 83 (108)
T ss_pred hccCCEEEEECCCChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcCC------CCcCEEEECCEEEeCh
Confidence 34567899999999999999999988754223678888875211 11 1 11221 2334445689999999
Q ss_pred HHHHHHHHH
Q 028608 153 EAFRRLYEE 161 (206)
Q Consensus 153 dA~~~il~~ 161 (206)
+-+.++-..
T Consensus 84 ddl~~l~~~ 92 (108)
T PHA03050 84 SDLLEIDNM 92 (108)
T ss_pred HHHHHHHHc
Confidence 988886543
No 9
>PRK10638 glutaredoxin 3; Provisional
Probab=94.82 E-value=0.23 Score=35.46 Aligned_cols=73 Identities=16% Similarity=0.304 Sum_probs=48.5
Q ss_pred ceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhHHHhCCCChhcccceEEEEEeCCeEEehHHHHHHHHHH
Q 028608 83 KIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSIEENQGLDYKTVMGSIHAIVSDGTVVTDVEAFRRLYEE 161 (206)
Q Consensus 83 ~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~~l~~~gld~e~~~~~lhvv~~dG~v~~G~dA~~~il~~ 161 (206)
+++||--..||+|.+...+|.++.. .+..+++..+.........++ -...+-++.-+|+.+.|.+.+.++...
T Consensus 3 ~v~ly~~~~Cp~C~~a~~~L~~~gi---~y~~~dv~~~~~~~~~l~~~~---g~~~vP~i~~~g~~igG~~~~~~~~~~ 75 (83)
T PRK10638 3 NVEIYTKATCPFCHRAKALLNSKGV---SFQEIPIDGDAAKREEMIKRS---GRTTVPQIFIDAQHIGGCDDLYALDAR 75 (83)
T ss_pred cEEEEECCCChhHHHHHHHHHHcCC---CcEEEECCCCHHHHHHHHHHh---CCCCcCEEEECCEEEeCHHHHHHHHHc
Confidence 5777888999999999999988753 577788865532111111111 112344555689999999998877654
No 10
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=94.69 E-value=0.46 Score=32.87 Aligned_cols=70 Identities=14% Similarity=0.236 Sum_probs=45.0
Q ss_pred ceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhHHHhCCCChhcccceEEEEE-e---CCeEEehHHHHHHH
Q 028608 83 KIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSIEENQGLDYKTVMGSIHAIV-S---DGTVVTDVEAFRRL 158 (206)
Q Consensus 83 ~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~~l~~~gld~e~~~~~lhvv~-~---dG~v~~G~dA~~~i 158 (206)
+++||+...||+|.+...+|..+.. .++++++.......+... + ...+-++. . +|++...+.+++.-
T Consensus 1 ~i~Ly~~~~~p~c~kv~~~L~~~gi---~y~~~~~~~~~~~~~~~~---~---~~~vP~l~~~~~~~~~~l~eS~~I~~y 71 (77)
T cd03040 1 KITLYQYKTCPFCCKVRAFLDYHGI---PYEVVEVNPVSRKEIKWS---S---YKKVPILRVESGGDGQQLVDSSVIIST 71 (77)
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCC---ceEEEECCchhHHHHHHh---C---CCccCEEEECCCCCccEEEcHHHHHHH
Confidence 4688999999999999999987653 366666543222112111 1 12333443 3 48899999999886
Q ss_pred HHH
Q 028608 159 YEE 161 (206)
Q Consensus 159 l~~ 161 (206)
+..
T Consensus 72 L~~ 74 (77)
T cd03040 72 LKT 74 (77)
T ss_pred HHH
Confidence 654
No 11
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=94.65 E-value=0.21 Score=34.32 Aligned_cols=70 Identities=16% Similarity=0.318 Sum_probs=48.0
Q ss_pred ceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhh-H-H-HhCCCChhcccceEEEEEeCCeEEehHHHHHHHH
Q 028608 83 KIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYS-I-E-ENQGLDYKTVMGSIHAIVSDGTVVTDVEAFRRLY 159 (206)
Q Consensus 83 ~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~-~-l-~~~gld~e~~~~~lhvv~~dG~v~~G~dA~~~il 159 (206)
+++||.=-.||.|.....+|.+++ -.+..+++..+... + + +..|. ...+-++.-+|+...|.+.+.++.
T Consensus 1 ~i~ly~~~~Cp~C~~ak~~L~~~~---i~~~~i~i~~~~~~~~~~~~~~~~-----~~~vP~v~i~g~~igg~~~~~~~~ 72 (75)
T cd03418 1 KVEIYTKPNCPYCVRAKALLDKKG---VDYEEIDVDGDPALREEMINRSGG-----RRTVPQIFIGDVHIGGCDDLYALE 72 (75)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCC---CcEEEEECCCCHHHHHHHHHHhCC-----CCccCEEEECCEEEeChHHHHHHH
Confidence 367888889999999999998875 36788888765221 1 1 11121 112344556899999999998876
Q ss_pred H
Q 028608 160 E 160 (206)
Q Consensus 160 ~ 160 (206)
+
T Consensus 73 ~ 73 (75)
T cd03418 73 R 73 (75)
T ss_pred h
Confidence 4
No 12
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=94.25 E-value=0.31 Score=34.83 Aligned_cols=75 Identities=17% Similarity=0.309 Sum_probs=50.0
Q ss_pred ceEEEEcCCChhhHHHHHHHHhhcc--cCCCEEEEeCCChhhh--HH-HhCCCChhcccceEEEEEeCCeEEehHHHHHH
Q 028608 83 KIKMLYDGDCPLCMREVNMLKERNK--QYGTIKFVDISSDEYS--IE-ENQGLDYKTVMGSIHAIVSDGTVVTDVEAFRR 157 (206)
Q Consensus 83 ~l~VlYDG~CplC~~~v~~L~r~d~--~~~~I~fvdi~s~~~~--~l-~~~gld~e~~~~~lhvv~~dG~v~~G~dA~~~ 157 (206)
+++||+=..||+|.+..++|.+... ..-.+.++++..+... .+ ...|... ..+-.+--||+...|.+-+..
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~~~~el~~~~~~~~----~~vP~ifi~g~~igg~~~~~~ 77 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEGISKADLEKTVGKPV----ETVPQIFVDQKHIGGCTDFEA 77 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCCChHHHHHHHHHHCCCC----CcCCEEEECCEEEcCHHHHHH
Confidence 5788999999999999999988531 1245788888765311 11 1122111 123344469999999999988
Q ss_pred HHHH
Q 028608 158 LYEE 161 (206)
Q Consensus 158 il~~ 161 (206)
+.+.
T Consensus 78 ~~~~ 81 (85)
T PRK11200 78 YVKE 81 (85)
T ss_pred HHHH
Confidence 7765
No 13
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=94.04 E-value=0.26 Score=33.64 Aligned_cols=36 Identities=25% Similarity=0.428 Sum_probs=29.5
Q ss_pred ceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChh
Q 028608 83 KIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDE 121 (206)
Q Consensus 83 ~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~ 121 (206)
+++||+-.+||.|.+...+|.+.. -.+.++++..+.
T Consensus 1 ~v~ly~~~~C~~C~~~~~~L~~~~---~~~~~idi~~~~ 36 (77)
T TIGR02200 1 TITVYGTTWCGYCAQLMRTLDKLG---AAYEWVDIEEDE 36 (77)
T ss_pred CEEEEECCCChhHHHHHHHHHHcC---CceEEEeCcCCH
Confidence 478999999999999999998764 357888887554
No 14
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=93.80 E-value=0.58 Score=32.75 Aligned_cols=72 Identities=7% Similarity=0.037 Sum_probs=44.6
Q ss_pred eEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhHHHhCCCChhcccceEEEE-Ee-CCeEEehHHHHHHHHHH
Q 028608 84 IKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSIEENQGLDYKTVMGSIHAI-VS-DGTVVTDVEAFRRLYEE 161 (206)
Q Consensus 84 l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~~l~~~gld~e~~~~~lhvv-~~-dG~v~~G~dA~~~il~~ 161 (206)
+++++...||+|.+...+|..++. .++.+++........+...+.+ ...+-++ +. +|.+..++.|++.-+..
T Consensus 2 ~~Ly~~~~sp~~~kv~~~L~~~gi---~y~~~~v~~~~~~~~~~~~~~p---~~~vP~l~~~~~~~~l~es~~I~~yL~~ 75 (77)
T cd03041 2 LELYEFEGSPFCRLVREVLTELEL---DVILYPCPKGSPKRDKFLEKGG---KVQVPYLVDPNTGVQMFESADIVKYLFK 75 (77)
T ss_pred ceEecCCCCchHHHHHHHHHHcCC---cEEEEECCCChHHHHHHHHhCC---CCcccEEEeCCCCeEEEcHHHHHHHHHH
Confidence 577888899999999888887643 4666776543211111112222 1333343 33 47899999999987654
No 15
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=93.75 E-value=0.24 Score=35.19 Aligned_cols=42 Identities=21% Similarity=0.450 Sum_probs=29.1
Q ss_pred CCCceEEEEcCCChhhHHHHHHHHhhcccC--CCEEEEeCCChh
Q 028608 80 ENWKIKMLYDGDCPLCMREVNMLKERNKQY--GTIKFVDISSDE 121 (206)
Q Consensus 80 ~~~~l~VlYDG~CplC~~~v~~L~r~d~~~--~~I~fvdi~s~~ 121 (206)
...-++.||..+|+.|......+.+.-... ..+.++.++.+.
T Consensus 19 ~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~ 62 (116)
T cd02966 19 GKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDD 62 (116)
T ss_pred CCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCC
Confidence 345678899999999999888777663222 456666655543
No 16
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=93.05 E-value=0.73 Score=33.30 Aligned_cols=74 Identities=19% Similarity=0.358 Sum_probs=48.2
Q ss_pred eEEEEcCCChhhHHHHHHHHhhccc--CCCEEEEeCCChhhh--HH-HhCCCChhcccceEEEEEeCCeEEehHHHHHHH
Q 028608 84 IKMLYDGDCPLCMREVNMLKERNKQ--YGTIKFVDISSDEYS--IE-ENQGLDYKTVMGSIHAIVSDGTVVTDVEAFRRL 158 (206)
Q Consensus 84 l~VlYDG~CplC~~~v~~L~r~d~~--~~~I~fvdi~s~~~~--~l-~~~gld~e~~~~~lhvv~~dG~v~~G~dA~~~i 158 (206)
++||.=.+||+|.+..++|.++... .-.+..++++.+... .+ +..|.. ...+-++.-||+...|.+-+..+
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~~~~~l~~~~g~~----~~tVP~ifi~g~~igG~~dl~~~ 77 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAEGISKADLEKTVGKP----VETVPQIFVDEKHVGGCTDFEQL 77 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCCHHHHHHHHHHhCCC----CCCcCeEEECCEEecCHHHHHHH
Confidence 4677778999999999999887431 124677777754311 11 112211 12344555699999999999987
Q ss_pred HHH
Q 028608 159 YEE 161 (206)
Q Consensus 159 l~~ 161 (206)
.+.
T Consensus 78 ~~~ 80 (86)
T TIGR02183 78 VKE 80 (86)
T ss_pred HHh
Confidence 664
No 17
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=92.76 E-value=0.79 Score=37.29 Aligned_cols=109 Identities=19% Similarity=0.199 Sum_probs=65.2
Q ss_pred CCCCceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhH-HHhCCCChhcccceEEEEEeCCeEEeh---HHH
Q 028608 79 PENWKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSI-EENQGLDYKTVMGSIHAIVSDGTVVTD---VEA 154 (206)
Q Consensus 79 ~~~~~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~~-l~~~gld~e~~~~~lhvv~~dG~v~~G---~dA 154 (206)
.+..+++|+||-.|+=|+.|++.++..+- .+.-+.. ++... .+..|+++|-. +-|-..-+|.++-| .+|
T Consensus 23 a~~~~~~vyksPnCGCC~~w~~~mk~~Gf---~Vk~~~~--~d~~alK~~~gIp~e~~--SCHT~VI~Gy~vEGHVPa~a 95 (149)
T COG3019 23 AQATEMVVYKSPNCGCCDEWAQHMKANGF---EVKVVET--DDFLALKRRLGIPYEMQ--SCHTAVINGYYVEGHVPAEA 95 (149)
T ss_pred cceeeEEEEeCCCCccHHHHHHHHHhCCc---EEEEeec--CcHHHHHHhcCCChhhc--cccEEEEcCEEEeccCCHHH
Confidence 37789999999999999999999985432 3444443 33333 34588876532 34544458887766 577
Q ss_pred HHHHHHHcC-chhhh---hhhcccchhhHHHHHHHHHHhhcccc
Q 028608 155 FRRLYEEVG-LGWVY---AITKYEPIAKIADFVYSVWAKYRLQI 194 (206)
Q Consensus 155 ~~~il~~lp-~~w~~---~ll~l~pv~~l~d~~Yr~VArnR~ri 194 (206)
+.+++..-| ..=++ ....-++.-.=..-.|+.|+.|+..+
T Consensus 96 I~~ll~~~pd~~GlavPgmp~gs~Gme~~~~~~Y~Vv~~~~~g~ 139 (149)
T COG3019 96 IARLLAEKPDAKGLAVPGMPVGSPGMEGDRKDSYDVVAVNGDGQ 139 (149)
T ss_pred HHHHHhCCCCcceecCCCCcCCCCCcCCCCCCceEEEEEcCccc
Confidence 777776544 11111 11121221111245688888887543
No 18
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=92.69 E-value=0.63 Score=32.48 Aligned_cols=72 Identities=17% Similarity=0.236 Sum_probs=47.2
Q ss_pred eEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhHHHhCCCChhcccceEEEEEeCCeEEehHHHHHHHHHH
Q 028608 84 IKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSIEENQGLDYKTVMGSIHAIVSDGTVVTDVEAFRRLYEE 161 (206)
Q Consensus 84 l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~~l~~~gld~e~~~~~lhvv~~dG~v~~G~dA~~~il~~ 161 (206)
++||-=..||.|....++|.+++ -.+..+++..+.....+...+.- ...+-++.-+|+.+.|.+.+..+...
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~~---i~~~~~di~~~~~~~~~~~~~~g---~~~vP~i~i~g~~igg~~~~~~~~~~ 72 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSKG---VTFTEIRVDGDPALRDEMMQRSG---RRTVPQIFIGDVHVGGCDDLYALDRE 72 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHcC---CCcEEEEecCCHHHHHHHHHHhC---CCCcCEEEECCEEEcChHHHHHHHHc
Confidence 35677789999999999998874 35778888765422111100000 12234455689999999999887654
No 19
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=92.68 E-value=0.57 Score=32.26 Aligned_cols=68 Identities=15% Similarity=0.378 Sum_probs=46.4
Q ss_pred ceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhH-HHh-CCCChhcccceEEEEEeCCeEEehHHHHHHHH
Q 028608 83 KIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSI-EEN-QGLDYKTVMGSIHAIVSDGTVVTDVEAFRRLY 159 (206)
Q Consensus 83 ~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~~-l~~-~gld~e~~~~~lhvv~~dG~v~~G~dA~~~il 159 (206)
+++||-=..||+|.+..++|.+++ -.+..+++..+.... +.. .|. ..+-++--+|+...|++.+.+.+
T Consensus 2 ~v~lys~~~Cp~C~~ak~~L~~~~---i~~~~~~v~~~~~~~~~~~~~g~------~~vP~ifi~g~~igg~~~l~~~l 71 (72)
T cd03029 2 SVSLFTKPGCPFCARAKAALQENG---ISYEEIPLGKDITGRSLRAVTGA------MTVPQVFIDGELIGGSDDLEKYF 71 (72)
T ss_pred eEEEEECCCCHHHHHHHHHHHHcC---CCcEEEECCCChhHHHHHHHhCC------CCcCeEEECCEEEeCHHHHHHHh
Confidence 467777889999999999998764 357778887654221 111 121 23445556899999998887764
No 20
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=92.66 E-value=0.64 Score=33.90 Aligned_cols=61 Identities=16% Similarity=0.246 Sum_probs=40.7
Q ss_pred CChhhHHHHHHHHhhcccCCCEEEEeCCChhhhH--HH-hCCCChhcccceEEEEEeCCeEEehHHHHHHHHH
Q 028608 91 DCPLCMREVNMLKERNKQYGTIKFVDISSDEYSI--EE-NQGLDYKTVMGSIHAIVSDGTVVTDVEAFRRLYE 160 (206)
Q Consensus 91 ~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~~--l~-~~gld~e~~~~~lhvv~~dG~v~~G~dA~~~il~ 160 (206)
.||+|.+..++|.+.. -.+..+++..+.... +. ..| ...+-.+--+|+.+.|.+-+.++..
T Consensus 22 ~Cp~C~~ak~~L~~~~---i~y~~idv~~~~~~~~~l~~~~g------~~tvP~vfi~g~~iGG~~~l~~l~~ 85 (90)
T cd03028 22 RCGFSRKVVQILNQLG---VDFGTFDILEDEEVRQGLKEYSN------WPTFPQLYVNGELVGGCDIVKEMHE 85 (90)
T ss_pred CCcHHHHHHHHHHHcC---CCeEEEEcCCCHHHHHHHHHHhC------CCCCCEEEECCEEEeCHHHHHHHHH
Confidence 8999999999998764 457888876553221 11 112 1123344568999999998887654
No 21
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=92.50 E-value=0.6 Score=34.91 Aligned_cols=79 Identities=14% Similarity=0.147 Sum_probs=50.3
Q ss_pred CCCCceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhh-hHHHhCCCChhcccceEEEEEeCCeEEehHHHHHH
Q 028608 79 PENWKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEY-SIEENQGLDYKTVMGSIHAIVSDGTVVTDVEAFRR 157 (206)
Q Consensus 79 ~~~~~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~-~~l~~~gld~e~~~~~lhvv~~dG~v~~G~dA~~~ 157 (206)
..+.+++||==..||+|.+..++|.+.. -.+..+++..... ..++ ..+..-.-...+-.+--+|+.+.|.+-+.+
T Consensus 5 i~~~~Vvvysk~~Cp~C~~ak~~L~~~~---i~~~~vdid~~~~~~~~~-~~l~~~tg~~tvP~Vfi~g~~iGG~ddl~~ 80 (99)
T TIGR02189 5 VSEKAVVIFSRSSCCMCHVVKRLLLTLG---VNPAVHEIDKEPAGKDIE-NALSRLGCSPAVPAVFVGGKLVGGLENVMA 80 (99)
T ss_pred hccCCEEEEECCCCHHHHHHHHHHHHcC---CCCEEEEcCCCccHHHHH-HHHHHhcCCCCcCeEEECCEEEcCHHHHHH
Confidence 3456788898999999999999998764 3467778864422 1110 000000011234455569999999998887
Q ss_pred HHHH
Q 028608 158 LYEE 161 (206)
Q Consensus 158 il~~ 161 (206)
+.+.
T Consensus 81 l~~~ 84 (99)
T TIGR02189 81 LHIS 84 (99)
T ss_pred HHHc
Confidence 6543
No 22
>PF13728 TraF: F plasmid transfer operon protein
Probab=92.11 E-value=0.13 Score=43.88 Aligned_cols=39 Identities=18% Similarity=0.530 Sum_probs=28.8
Q ss_pred CCCCceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCC
Q 028608 79 PENWKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDIS 118 (206)
Q Consensus 79 ~~~~~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~ 118 (206)
.+.+.+++||+|+|++|....--|+.... .-.|....++
T Consensus 119 a~~~gL~~F~~~~C~~C~~~~pil~~~~~-~yg~~v~~vs 157 (215)
T PF13728_consen 119 AQKYGLFFFYRSDCPYCQQQAPILQQFAD-KYGFSVIPVS 157 (215)
T ss_pred hhCeEEEEEEcCCCchhHHHHHHHHHHHH-HhCCEEEEEe
Confidence 36788999999999999999988887754 2334444433
No 23
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=92.02 E-value=0.9 Score=32.81 Aligned_cols=77 Identities=19% Similarity=0.224 Sum_probs=47.4
Q ss_pred CCCCCCCceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhHHHhCCCChhcccceEEEEEeC-CeEEehHHH
Q 028608 76 DPSPENWKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSIEENQGLDYKTVMGSIHAIVSD-GTVVTDVEA 154 (206)
Q Consensus 76 ~~~~~~~~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~~l~~~gld~e~~~~~lhvv~~d-G~v~~G~dA 154 (206)
.+.++..++++|+-..||.|.+....|...+. .+.++.+....... ....+++ ...+-++..+ |.++..+.|
T Consensus 11 ~~~~~~~~~~Ly~~~~sp~~~kv~~~L~~~gl---~~~~~~v~~~~~~~-~~~~~np---~~~vPvL~~~~g~~l~eS~a 83 (89)
T cd03055 11 EPPPVPGIIRLYSMRFCPYAQRARLVLAAKNI---PHEVININLKDKPD-WFLEKNP---QGKVPALEIDEGKVVYESLI 83 (89)
T ss_pred CCCCCCCcEEEEeCCCCchHHHHHHHHHHcCC---CCeEEEeCCCCCcH-HHHhhCC---CCCcCEEEECCCCEEECHHH
Confidence 34467778899999999999988777776643 35555554322111 1111111 2334455444 889999999
Q ss_pred HHHHH
Q 028608 155 FRRLY 159 (206)
Q Consensus 155 ~~~il 159 (206)
+++-+
T Consensus 84 I~~yL 88 (89)
T cd03055 84 ICEYL 88 (89)
T ss_pred HHHhh
Confidence 87643
No 24
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=91.50 E-value=0.46 Score=31.98 Aligned_cols=36 Identities=19% Similarity=0.306 Sum_probs=26.4
Q ss_pred ceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCC
Q 028608 83 KIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDIS 118 (206)
Q Consensus 83 ~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~ 118 (206)
++++||=.+||.|......+.+.......+.|..+.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~id 37 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNPNISAEMID 37 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCceEEEEEE
Confidence 468999999999999999988764323446665443
No 25
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=91.41 E-value=0.17 Score=44.57 Aligned_cols=38 Identities=13% Similarity=0.326 Sum_probs=29.9
Q ss_pred CCCceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCC
Q 028608 80 ENWKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDIS 118 (206)
Q Consensus 80 ~~~~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~ 118 (206)
+++.+++||+|+||+|...+--|+.... .-.|...+++
T Consensus 143 ~~~GL~fFy~s~Cp~C~~~aPil~~fa~-~yg~~v~~VS 180 (248)
T PRK13703 143 EHYGLMFFYRGQDPIDGQLAQVINDFRD-TYGLSVIPVS 180 (248)
T ss_pred hcceEEEEECCCCchhHHHHHHHHHHHH-HhCCeEEEEe
Confidence 5688999999999999999999988754 3445555544
No 26
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=90.93 E-value=0.42 Score=38.79 Aligned_cols=29 Identities=21% Similarity=0.652 Sum_probs=25.0
Q ss_pred CCCCceEEEEcCCChhhHHHHHHHHhhcc
Q 028608 79 PENWKIKMLYDGDCPLCMREVNMLKERNK 107 (206)
Q Consensus 79 ~~~~~l~VlYDG~CplC~~~v~~L~r~d~ 107 (206)
.++..++.||-.+||.|+.++-.+.+.-.
T Consensus 49 l~~~~lvnFWAsWCppCr~e~P~L~~l~~ 77 (153)
T TIGR02738 49 QDDYALVFFYQSTCPYCHQFAPVLKRFSQ 77 (153)
T ss_pred cCCCEEEEEECCCChhHHHHHHHHHHHHH
Confidence 56678999999999999999999987743
No 27
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=90.58 E-value=1.4 Score=32.84 Aligned_cols=63 Identities=17% Similarity=0.316 Sum_probs=41.0
Q ss_pred CCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhH--HH-hCCCChhcccceEEEEEeCCeEEehHHHHHHHHHH
Q 028608 90 GDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSI--EE-NQGLDYKTVMGSIHAIVSDGTVVTDVEAFRRLYEE 161 (206)
Q Consensus 90 G~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~~--l~-~~gld~e~~~~~lhvv~~dG~v~~G~dA~~~il~~ 161 (206)
..||+|.+..++|.++.. .+..+|+..+.... +. ..|- ..+-.+--+|+.+.|.+.+.++.+.
T Consensus 25 ~~Cp~C~~ak~lL~~~~i---~~~~~di~~~~~~~~~l~~~tg~------~tvP~vfi~g~~iGG~ddl~~l~~~ 90 (97)
T TIGR00365 25 PQCGFSARAVQILKACGV---PFAYVNVLEDPEIRQGIKEYSNW------PTIPQLYVKGEFVGGCDIIMEMYQS 90 (97)
T ss_pred CCCchHHHHHHHHHHcCC---CEEEEECCCCHHHHHHHHHHhCC------CCCCEEEECCEEEeChHHHHHHHHC
Confidence 479999999999988753 47777875443211 11 1121 1233344589999999999887653
No 28
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=90.46 E-value=0.24 Score=43.77 Aligned_cols=38 Identities=18% Similarity=0.382 Sum_probs=29.0
Q ss_pred CCCceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCC
Q 028608 80 ENWKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDIS 118 (206)
Q Consensus 80 ~~~~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~ 118 (206)
+++.+++||+|+||+|...+--|+.... .-.|...+++
T Consensus 150 ~~~gL~fFy~~~C~~C~~~apil~~fa~-~ygi~v~~VS 187 (256)
T TIGR02739 150 QSYGLFFFYRGKSPISQKMAPVIQAFAK-EYGISVIPIS 187 (256)
T ss_pred hceeEEEEECCCCchhHHHHHHHHHHHH-HhCCeEEEEe
Confidence 6688999999999999999998877754 2335544444
No 29
>PRK10824 glutaredoxin-4; Provisional
Probab=90.36 E-value=1.6 Score=33.99 Aligned_cols=74 Identities=18% Similarity=0.275 Sum_probs=45.5
Q ss_pred CCCCceEEEEcC-----CChhhHHHHHHHHhhcccCCCEEEEeCCChhhh-H-HH-hCCCChhcccceEEEEEeCCeEEe
Q 028608 79 PENWKIKMLYDG-----DCPLCMREVNMLKERNKQYGTIKFVDISSDEYS-I-EE-NQGLDYKTVMGSIHAIVSDGTVVT 150 (206)
Q Consensus 79 ~~~~~l~VlYDG-----~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~-~-l~-~~gld~e~~~~~lhvv~~dG~v~~ 150 (206)
..+.+++||==| .||+|.+..+.|..... .+..+++..+... . +. ..|- ... --|--+|+.+.
T Consensus 12 I~~~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~~i---~~~~idi~~d~~~~~~l~~~sg~--~TV----PQIFI~G~~IG 82 (115)
T PRK10824 12 IAENPILLYMKGSPKLPSCGFSAQAVQALSACGE---RFAYVDILQNPDIRAELPKYANW--PTF----PQLWVDGELVG 82 (115)
T ss_pred HhcCCEEEEECCCCCCCCCchHHHHHHHHHHcCC---CceEEEecCCHHHHHHHHHHhCC--CCC----CeEEECCEEEc
Confidence 345566666665 89999999999988753 4555666544321 1 11 1111 111 12224899999
Q ss_pred hHHHHHHHHHH
Q 028608 151 DVEAFRRLYEE 161 (206)
Q Consensus 151 G~dA~~~il~~ 161 (206)
|.|-+.++...
T Consensus 83 G~ddl~~l~~~ 93 (115)
T PRK10824 83 GCDIVIEMYQR 93 (115)
T ss_pred ChHHHHHHHHC
Confidence 99998887653
No 30
>PRK10329 glutaredoxin-like protein; Provisional
Probab=90.34 E-value=1.5 Score=31.60 Aligned_cols=62 Identities=11% Similarity=0.285 Sum_probs=40.4
Q ss_pred ceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhH--HHhCCCChhcccceEEEEEeCCeEEehHH
Q 028608 83 KIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSI--EENQGLDYKTVMGSIHAIVSDGTVVTDVE 153 (206)
Q Consensus 83 ~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~~--l~~~gld~e~~~~~lhvv~~dG~v~~G~d 153 (206)
+++||--.+||+|.+...+|.++. -.+..+++..+.... +...|. ..+-++..+|..+.|++
T Consensus 2 ~v~lYt~~~Cp~C~~ak~~L~~~g---I~~~~idi~~~~~~~~~~~~~g~------~~vPvv~i~~~~~~Gf~ 65 (81)
T PRK10329 2 RITIYTRNDCVQCHATKRAMESRG---FDFEMINVDRVPEAAETLRAQGF------RQLPVVIAGDLSWSGFR 65 (81)
T ss_pred EEEEEeCCCCHhHHHHHHHHHHCC---CceEEEECCCCHHHHHHHHHcCC------CCcCEEEECCEEEecCC
Confidence 578888999999999999997754 357778887654221 111121 23444555677777765
No 31
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=90.23 E-value=1.1 Score=28.83 Aligned_cols=68 Identities=24% Similarity=0.299 Sum_probs=40.6
Q ss_pred EEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhHHHhCCCChhcccceEEEEEeCCeEEehHHHHHHH
Q 028608 85 KMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSIEENQGLDYKTVMGSIHAIVSDGTVVTDVEAFRRL 158 (206)
Q Consensus 85 ~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~~l~~~gld~e~~~~~lhvv~~dG~v~~G~dA~~~i 158 (206)
++++-..||.|.+....+...+. .++.+.+............+.+ ...+-++..+|..+.++.|+.+-
T Consensus 2 ~ly~~~~~~~~~~~~~~l~~~~i---~~~~~~~~~~~~~~~~~~~~~~---~~~~P~l~~~~~~~~es~~I~~y 69 (71)
T cd00570 2 KLYYFPGSPRSLRVRLALEEKGL---PYELVPVDLGEGEQEEFLALNP---LGKVPVLEDGGLVLTESLAILEY 69 (71)
T ss_pred EEEeCCCCccHHHHHHHHHHcCC---CcEEEEeCCCCCCCHHHHhcCC---CCCCCEEEECCEEEEcHHHHHHH
Confidence 67888889999998888877643 3555554433211100111111 22344555678999999887764
No 32
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=90.17 E-value=0.5 Score=40.71 Aligned_cols=36 Identities=22% Similarity=0.383 Sum_probs=27.6
Q ss_pred CCCceEEEEcCCChhhHHHHHHHHhhcccCCCEEEE
Q 028608 80 ENWKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFV 115 (206)
Q Consensus 80 ~~~~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fv 115 (206)
....++||.|-+||+|++.-..+.+.+...-.+.+.
T Consensus 107 ~k~~I~vFtDp~CpyCkkl~~~l~~~~~~~v~v~~~ 142 (232)
T PRK10877 107 EKHVITVFTDITCGYCHKLHEQMKDYNALGITVRYL 142 (232)
T ss_pred CCEEEEEEECCCChHHHHHHHHHHHHhcCCeEEEEE
Confidence 445789999999999999999998876423345554
No 33
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=90.01 E-value=0.77 Score=34.07 Aligned_cols=43 Identities=23% Similarity=0.411 Sum_probs=30.0
Q ss_pred CCCceEEEEcC-CChhhHHHHHHHHhhcc--cCCCEEEEeCCChhh
Q 028608 80 ENWKIKMLYDG-DCPLCMREVNMLKERNK--QYGTIKFVDISSDEY 122 (206)
Q Consensus 80 ~~~~l~VlYDG-~CplC~~~v~~L~r~d~--~~~~I~fvdi~s~~~ 122 (206)
..+-+++||.+ +||.|..++.-|.+.-. ....+.++-++.+..
T Consensus 25 gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~ 70 (124)
T PF00578_consen 25 GKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDP 70 (124)
T ss_dssp TSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSH
T ss_pred CCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccc
Confidence 35678999999 99999999987766531 123567766665443
No 34
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=89.46 E-value=2.4 Score=36.66 Aligned_cols=94 Identities=18% Similarity=0.170 Sum_probs=59.7
Q ss_pred EcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhHHHhCCCChhcccceEEEEEeCCeEEehHHHHHHHHHHc-Cchh
Q 028608 88 YDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSIEENQGLDYKTVMGSIHAIVSDGTVVTDVEAFRRLYEEV-GLGW 166 (206)
Q Consensus 88 YDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~~l~~~gld~e~~~~~lhvv~~dG~v~~G~dA~~~il~~l-p~~w 166 (206)
+.|+||||++...-|..++. .=.+.-+|++..... ...+.+.. .+-++.-||.+.+.++.+...+... +.+.
T Consensus 17 ~~Gdcpf~qr~~m~L~~k~~-~f~vttVd~~~kp~~---f~~~sp~~---~~P~l~~d~~~~tDs~~Ie~~Lee~l~~p~ 89 (221)
T KOG1422|consen 17 SLGDCPFCQRLFMTLELKGV-PFKVTTVDLSRKPEW---FLDISPGG---KPPVLKFDEKWVTDSDKIEEFLEEKLPPPK 89 (221)
T ss_pred cCCCChhHHHHHHHHHHcCC-CceEEEeecCCCcHH---HHhhCCCC---CCCeEEeCCceeccHHHHHHHHHHhcCCCC
Confidence 47999999999888876654 345777887765432 23344432 3457778999999999999988774 4433
Q ss_pred hhhhhcccchhhHHHHHHHHHHh
Q 028608 167 VYAITKYEPIAKIADFVYSVWAK 189 (206)
Q Consensus 167 ~~~ll~l~pv~~l~d~~Yr~VAr 189 (206)
...+ .-+-...++.-+|.-++.
T Consensus 90 ~~~~-~~~E~asag~diF~kF~~ 111 (221)
T KOG1422|consen 90 LPTL-APPESASAGSDIFAKFSA 111 (221)
T ss_pred Cccc-CCHHHHhhHHHHHHHHHH
Confidence 2221 122234556666655543
No 35
>PTZ00051 thioredoxin; Provisional
Probab=89.06 E-value=0.83 Score=32.73 Aligned_cols=64 Identities=27% Similarity=0.460 Sum_probs=40.2
Q ss_pred CceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhH-HHhCCCChhcccceEEEEEeCCeEE
Q 028608 82 WKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSI-EENQGLDYKTVMGSIHAIVSDGTVV 149 (206)
Q Consensus 82 ~~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~~-l~~~gld~e~~~~~lhvv~~dG~v~ 149 (206)
.-++.||..+|+-|+.....+.+.......+.|+.+..+.... ...+++. ..=+ + ++..+|+..
T Consensus 20 ~vli~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~~~~~~~v~--~~Pt-~-~~~~~g~~~ 84 (98)
T PTZ00051 20 LVIVDFYAEWCGPCKRIAPFYEECSKEYTKMVFVKVDVDELSEVAEKENIT--SMPT-F-KVFKNGSVV 84 (98)
T ss_pred eEEEEEECCCCHHHHHHhHHHHHHHHHcCCcEEEEEECcchHHHHHHCCCc--eeeE-E-EEEeCCeEE
Confidence 4568999999999999988887764334457777665543332 3455552 2222 3 344687643
No 36
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=89.01 E-value=0.7 Score=40.28 Aligned_cols=37 Identities=11% Similarity=0.229 Sum_probs=26.5
Q ss_pred CCceEEEEcCCChhhHHHHHHHHhhcccC-CCEEEEeC
Q 028608 81 NWKIKMLYDGDCPLCMREVNMLKERNKQY-GTIKFVDI 117 (206)
Q Consensus 81 ~~~l~VlYDG~CplC~~~v~~L~r~d~~~-~~I~fvdi 117 (206)
...++||.|-+||+|++.-.-+..+...+ -+++++++
T Consensus 118 k~~I~vFtDp~CpyC~kl~~~l~~~~~~g~V~v~~ip~ 155 (251)
T PRK11657 118 PRIVYVFADPNCPYCKQFWQQARPWVDSGKVQLRHILV 155 (251)
T ss_pred CeEEEEEECCCChhHHHHHHHHHHHhhcCceEEEEEec
Confidence 34689999999999999988877654311 24566654
No 37
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=88.85 E-value=0.93 Score=30.06 Aligned_cols=62 Identities=18% Similarity=0.328 Sum_probs=38.9
Q ss_pred ceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhH---HHhCCCChhcccceEEEEEeCCeEEehHH
Q 028608 83 KIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSI---EENQGLDYKTVMGSIHAIVSDGTVVTDVE 153 (206)
Q Consensus 83 ~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~~---l~~~gld~e~~~~~lhvv~~dG~v~~G~d 153 (206)
++++|+-.+||.|.....+|.+.+ -.+..+++.++.... .+..|.. .+-++.-+|+++.|.+
T Consensus 1 ~i~lf~~~~C~~C~~~~~~l~~~~---i~~~~vdi~~~~~~~~~~~~~~~~~------~vP~~~~~~~~~~g~~ 65 (74)
T TIGR02196 1 KVKVYTTPWCPPCKKAKEYLTSKG---IAFEEIDVEKDSAAREEVLKVLGQR------GVPVIVIGHKIIVGFD 65 (74)
T ss_pred CEEEEcCCCChhHHHHHHHHHHCC---CeEEEEeccCCHHHHHHHHHHhCCC------cccEEEECCEEEeeCC
Confidence 468999999999999988887653 357778887643221 1223321 1223334688876654
No 38
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=88.80 E-value=1.9 Score=30.99 Aligned_cols=57 Identities=21% Similarity=0.248 Sum_probs=40.7
Q ss_pred CCceEEEEcCCChhhHHHHHHHHhhccc-CCCEEEEeCCChhhhH-HHhCCCChhcccc
Q 028608 81 NWKIKMLYDGDCPLCMREVNMLKERNKQ-YGTIKFVDISSDEYSI-EENQGLDYKTVMG 137 (206)
Q Consensus 81 ~~~l~VlYDG~CplC~~~v~~L~r~d~~-~~~I~fvdi~s~~~~~-l~~~gld~e~~~~ 137 (206)
..-+++||+.+|+-|......+.+.... .+.+.|+-+..+.... ....|+..+..-.
T Consensus 13 ~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~~~~~~~~i~~~~~P~ 71 (103)
T cd02982 13 KPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADDFGRHLEYFGLKEEDLPV 71 (103)
T ss_pred CCEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhHHHHHHcCCChhhCCE
Confidence 4566888999999999999988776432 2668888877776443 5678887554433
No 39
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=88.65 E-value=4.3 Score=27.62 Aligned_cols=66 Identities=20% Similarity=0.268 Sum_probs=40.4
Q ss_pred EEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhHHHhCCCChhcccceEEEEEe-CCeEEehHHHHHH
Q 028608 85 KMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSIEENQGLDYKTVMGSIHAIVS-DGTVVTDVEAFRR 157 (206)
Q Consensus 85 ~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~~l~~~gld~e~~~~~lhvv~~-dG~v~~G~dA~~~ 157 (206)
++|+-..||+|.+....+..++. .++++.+....... +...+++ ...+-++.. ||.....+.|+++
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~gl---~~e~~~v~~~~~~~-~~~~~np---~~~vP~L~~~~g~~l~eS~aI~~ 68 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAGI---TVELREVELKNKPA-EMLAASP---KGTVPVLVLGNGTVIEESLDIMR 68 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcCC---CcEEEEeCCCCCCH-HHHHHCC---CCCCCEEEECCCcEEecHHHHHH
Confidence 67778899999999888887654 35555444221111 1112232 233445544 6999999998875
No 40
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=88.61 E-value=2.6 Score=28.28 Aligned_cols=69 Identities=16% Similarity=0.134 Sum_probs=40.4
Q ss_pred eEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhh--hHHHhCCCChhcccceEEEEEeCCeEEehHHHHHHH
Q 028608 84 IKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEY--SIEENQGLDYKTVMGSIHAIVSDGTVVTDVEAFRRL 158 (206)
Q Consensus 84 l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~--~~l~~~gld~e~~~~~lhvv~~dG~v~~G~dA~~~i 158 (206)
+++++...||.|.+..-.+...+. .++.+.+..... .......+.+ ...+-++..+|.+...+.|+++-
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~~~---~~~~~~i~~~~~~~~~~~~~~~~p---~~~vP~l~~~~~~i~es~aI~~y 71 (73)
T cd03056 1 MKLYGFPLSGNCYKVRLLLALLGI---PYEWVEVDILKGETRTPEFLALNP---NGEVPVLELDGRVLAESNAILVY 71 (73)
T ss_pred CEEEeCCCCccHHHHHHHHHHcCC---CcEEEEecCCCcccCCHHHHHhCC---CCCCCEEEECCEEEEcHHHHHHH
Confidence 468889999999988777776643 244444331110 0011111222 23344555678999999998764
No 41
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=88.58 E-value=2 Score=31.47 Aligned_cols=38 Identities=13% Similarity=0.335 Sum_probs=26.9
Q ss_pred CCceEEEEcCCChhhHHHHHHHHhhcc-cCCCEEEEeCC
Q 028608 81 NWKIKMLYDGDCPLCMREVNMLKERNK-QYGTIKFVDIS 118 (206)
Q Consensus 81 ~~~l~VlYDG~CplC~~~v~~L~r~d~-~~~~I~fvdi~ 118 (206)
..-++.||-.+|+.|..++..+.+... ..+.+.++.+.
T Consensus 22 k~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~ 60 (114)
T cd02967 22 RPTLLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLAS 60 (114)
T ss_pred CeEEEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEEe
Confidence 455788999999999999988877532 12346666553
No 42
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=88.45 E-value=3.2 Score=28.11 Aligned_cols=70 Identities=17% Similarity=0.214 Sum_probs=41.4
Q ss_pred eEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCC--ChhhhHHHhCCCChhcccceEEEEEeCCeEEehHHHHHHHH
Q 028608 84 IKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDIS--SDEYSIEENQGLDYKTVMGSIHAIVSDGTVVTDVEAFRRLY 159 (206)
Q Consensus 84 l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~--s~~~~~l~~~gld~e~~~~~lhvv~~dG~v~~G~dA~~~il 159 (206)
+++||...|+.|.+..-.+...+. .++.+.+. ...........+.+ .+.+-++..+|.+...+.|+..-+
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi---~~e~~~i~~~~~~~~~~~~~~~~p---~~~vP~l~~~~~~l~es~aI~~yL 72 (74)
T cd03045 1 IDLYYLPGSPPCRAVLLTAKALGL---ELNLKEVNLMKGEHLKPEFLKLNP---QHTVPTLVDNGFVLWESHAILIYL 72 (74)
T ss_pred CEEEeCCCCCcHHHHHHHHHHcCC---CCEEEEecCccCCcCCHHHHhhCc---CCCCCEEEECCEEEEcHHHHHHHH
Confidence 478999999999988888877643 34444433 21100011122222 233445555788999999987644
No 43
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=87.97 E-value=4.7 Score=27.26 Aligned_cols=67 Identities=12% Similarity=0.268 Sum_probs=40.8
Q ss_pred EEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhHHHhCCCChhcccceEEEE-EeCCeEEehHHHHHHHH
Q 028608 85 KMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSIEENQGLDYKTVMGSIHAI-VSDGTVVTDVEAFRRLY 159 (206)
Q Consensus 85 ~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~~l~~~gld~e~~~~~lhvv-~~dG~v~~G~dA~~~il 159 (206)
++++.-.||+|.+..-.|..++. .++.+.+.......... +.+ .+.+-++ +.||.+..++.|+++-+
T Consensus 2 ~Ly~~~~~p~~~rvr~~L~~~gl---~~~~~~~~~~~~~~~~~--~~~---~~~vP~L~~~~~~~l~es~aI~~yL 69 (71)
T cd03037 2 KLYIYEHCPFCVKARMIAGLKNI---PVEQIILQNDDEATPIR--MIG---AKQVPILEKDDGSFMAESLDIVAFI 69 (71)
T ss_pred ceEecCCCcHhHHHHHHHHHcCC---CeEEEECCCCchHHHHH--hcC---CCccCEEEeCCCeEeehHHHHHHHH
Confidence 57888899999988888876643 45555554332111111 111 2334344 34588999999988654
No 44
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=87.80 E-value=0.61 Score=39.16 Aligned_cols=55 Identities=18% Similarity=0.352 Sum_probs=36.2
Q ss_pred cCCCCCCCCCcCCCCCCCCCCceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCC
Q 028608 62 ATADPLTSKKEYDKDPSPENWKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDIS 118 (206)
Q Consensus 62 ~~~~p~~~~~~~~~~~~~~~~~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~ 118 (206)
...+|.....++ ..-+..+.++++||-.+||.|..++-.|.+.... -.+.++.++
T Consensus 52 ~~~~~~f~l~dG-~~v~lsd~~lV~FwaswCp~C~~e~P~L~~l~~~-~g~~Vi~Vs 106 (181)
T PRK13728 52 KPAPRWFRLSNG-RQVNLADWKVVLFMQGHCPYCHQFDPVLKQLAQQ-YGFSVFPYT 106 (181)
T ss_pred CCCCCccCCCCC-CEeehhHceEEEEECCCCHhHHHHHHHHHHHHHH-cCCEEEEEE
Confidence 334455555543 2233566679999999999999999888777442 236665554
No 45
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=87.69 E-value=0.92 Score=34.63 Aligned_cols=38 Identities=18% Similarity=0.336 Sum_probs=27.1
Q ss_pred CCCceEEEEcCCChhhHHHHHHHHhhcccCC--CEEEEeC
Q 028608 80 ENWKIKMLYDGDCPLCMREVNMLKERNKQYG--TIKFVDI 117 (206)
Q Consensus 80 ~~~~l~VlYDG~CplC~~~v~~L~r~d~~~~--~I~fvdi 117 (206)
....+++|+|=.||.|...-..+.+.....+ ++.|.++
T Consensus 5 a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~ 44 (154)
T cd03023 5 GDVTIVEFFDYNCGYCKKLAPELEKLLKEDPDVRVVFKEF 44 (154)
T ss_pred CCEEEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEeC
Confidence 3457899999999999999888876432122 4566555
No 46
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=87.18 E-value=1 Score=37.22 Aligned_cols=37 Identities=22% Similarity=0.403 Sum_probs=27.6
Q ss_pred CCCceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeC
Q 028608 80 ENWKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDI 117 (206)
Q Consensus 80 ~~~~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi 117 (206)
....+++|+|-+||+|.+.-..+.+... .-++.+..+
T Consensus 77 ~~~~i~~f~D~~Cp~C~~~~~~l~~~~~-~v~v~~~~~ 113 (197)
T cd03020 77 GKRVVYVFTDPDCPYCRKLEKELKPNAD-GVTVRIFPV 113 (197)
T ss_pred CCEEEEEEECCCCccHHHHHHHHhhccC-ceEEEEEEc
Confidence 4568999999999999999998876322 345555544
No 47
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=86.69 E-value=6.6 Score=26.34 Aligned_cols=70 Identities=14% Similarity=0.249 Sum_probs=42.4
Q ss_pred eEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhHHHhCCCChhcccceEEEEEeCCeEEehHHHHHHHHH
Q 028608 84 IKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSIEENQGLDYKTVMGSIHAIVSDGTVVTDVEAFRRLYE 160 (206)
Q Consensus 84 l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~~l~~~gld~e~~~~~lhvv~~dG~v~~G~dA~~~il~ 160 (206)
+++++...||.|.+....+...+. .+..+.+......+ ....+.+ .+.+-++..+|.....+.|+..-+.
T Consensus 1 ~~ly~~~~~~~~~~v~~~l~~~gi---~~~~~~v~~~~~~~-~~~~~~p---~~~vP~l~~~~~~l~es~aI~~yL~ 70 (73)
T cd03059 1 MTLYSGPDDVYSHRVRIVLAEKGV---SVEIIDVDPDNPPE-DLAELNP---YGTVPTLVDRDLVLYESRIIMEYLD 70 (73)
T ss_pred CEEEECCCChhHHHHHHHHHHcCC---ccEEEEcCCCCCCH-HHHhhCC---CCCCCEEEECCEEEEcHHHHHHHHH
Confidence 468888999999999888876643 34444433221111 1111222 2334455567789999999887654
No 48
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=86.63 E-value=0.99 Score=27.51 Aligned_cols=38 Identities=24% Similarity=0.381 Sum_probs=25.6
Q ss_pred eEEEEcCCChhhHHHHHHHHhhccc--CCCEEEEeCCChh
Q 028608 84 IKMLYDGDCPLCMREVNMLKERNKQ--YGTIKFVDISSDE 121 (206)
Q Consensus 84 l~VlYDG~CplC~~~v~~L~r~d~~--~~~I~fvdi~s~~ 121 (206)
+++++..+|+.|......+.+.... .-.+..++.....
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAELALLNKGVKFEAVDVDEDP 40 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHHHhhCCCcEEEEEEcCCCh
Confidence 4789999999999999998864111 2344555554443
No 49
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=86.62 E-value=1.6 Score=30.00 Aligned_cols=49 Identities=20% Similarity=0.333 Sum_probs=30.3
Q ss_pred ceEEEEcCCChhhHHHHHHHHhhccc-CCCEEEEeCCChhhhH-HHhCCCC
Q 028608 83 KIKMLYDGDCPLCMREVNMLKERNKQ-YGTIKFVDISSDEYSI-EENQGLD 131 (206)
Q Consensus 83 ~l~VlYDG~CplC~~~v~~L~r~d~~-~~~I~fvdi~s~~~~~-l~~~gld 131 (206)
+++|||-.+|+.|......+.+.... ...+.+..+..+.... .+.+|+.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~ 52 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQKAMEYGIM 52 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCHHHHHHcCCc
Confidence 46899999999999999988765211 2335555444332222 3445553
No 50
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=86.02 E-value=2.6 Score=33.29 Aligned_cols=38 Identities=11% Similarity=0.234 Sum_probs=26.4
Q ss_pred CceEEEEcCCChhhHHHHHHHHhhcc--cCCCEEEEeCCC
Q 028608 82 WKIKMLYDGDCPLCMREVNMLKERNK--QYGTIKFVDISS 119 (206)
Q Consensus 82 ~~l~VlYDG~CplC~~~v~~L~r~d~--~~~~I~fvdi~s 119 (206)
.-+++||..+|+.|......+.+.-. ....+.++.+..
T Consensus 63 ~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~ 102 (173)
T PRK03147 63 GVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNV 102 (173)
T ss_pred EEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEc
Confidence 36789999999999998777765532 123466666653
No 51
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=85.98 E-value=1.5 Score=31.04 Aligned_cols=51 Identities=24% Similarity=0.422 Sum_probs=34.5
Q ss_pred CCceEEEEcCCChhhHHHHHHHHhhcccCC-CEEEEeCCChhhhH-HHhCCCC
Q 028608 81 NWKIKMLYDGDCPLCMREVNMLKERNKQYG-TIKFVDISSDEYSI-EENQGLD 131 (206)
Q Consensus 81 ~~~l~VlYDG~CplC~~~v~~L~r~d~~~~-~I~fvdi~s~~~~~-l~~~gld 131 (206)
..-++.||..+|+.|......+.+...... .+.|..+..+.... ...++++
T Consensus 18 ~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~ 70 (103)
T PF00085_consen 18 KPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENKELCKKYGVK 70 (103)
T ss_dssp SEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSHHHHHHTTCS
T ss_pred CCEEEEEeCCCCCccccccceecccccccccccccchhhhhccchhhhccCCC
Confidence 456788999999999999988866643223 67776665554433 4566663
No 52
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=85.89 E-value=5.2 Score=32.77 Aligned_cols=35 Identities=20% Similarity=0.350 Sum_probs=26.0
Q ss_pred CceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCC
Q 028608 82 WKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDIS 118 (206)
Q Consensus 82 ~~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~ 118 (206)
.-++.||..+|+.|..++-.|.+... ..+.++.+.
T Consensus 70 ~vvv~FwatwC~~C~~e~p~l~~l~~--~~~~vi~v~ 104 (185)
T PRK15412 70 PVLLNVWATWCPTCRAEHQYLNQLSA--QGIRVVGMN 104 (185)
T ss_pred EEEEEEECCCCHHHHHHHHHHHHHHH--cCCEEEEEE
Confidence 45788999999999999999887743 235555443
No 53
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=85.87 E-value=0.8 Score=33.64 Aligned_cols=24 Identities=21% Similarity=0.292 Sum_probs=17.5
Q ss_pred CCceEEEEcCCChhhHHHHHHHHh
Q 028608 81 NWKIKMLYDGDCPLCMREVNMLKE 104 (206)
Q Consensus 81 ~~~l~VlYDG~CplC~~~v~~L~r 104 (206)
...+++|+|-+||.|...-..+.+
T Consensus 6 k~~v~~F~~~~C~~C~~~~~~~~~ 29 (112)
T PF13098_consen 6 KPIVVVFTDPWCPYCKKLEKELFP 29 (112)
T ss_dssp SEEEEEEE-TT-HHHHHHHHHHHH
T ss_pred CEEEEEEECCCCHHHHHHHHHHHH
Confidence 446788999999999988777764
No 54
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=85.82 E-value=2 Score=29.83 Aligned_cols=61 Identities=11% Similarity=0.111 Sum_probs=38.7
Q ss_pred CceEEEEcCCChhhHHHHHHHHhhccc---CCCEEEEeCCChhhhH-HHhCCCChhcccceEEEEEeC
Q 028608 82 WKIKMLYDGDCPLCMREVNMLKERNKQ---YGTIKFVDISSDEYSI-EENQGLDYKTVMGSIHAIVSD 145 (206)
Q Consensus 82 ~~l~VlYDG~CplC~~~v~~L~r~d~~---~~~I~fvdi~s~~~~~-l~~~gld~e~~~~~lhvv~~d 145 (206)
.-+++||..+|+.|......+.+.... ...+.|..+.-+.... .+.+++.. . =.+.+++++
T Consensus 17 ~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~--~-Pt~~~~~~~ 81 (101)
T cd02961 17 DVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGVRG--Y-PTIKLFPNG 81 (101)
T ss_pred cEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHHHHHhCCCCC--C-CEEEEEcCC
Confidence 567899999999999988877654321 3678888776554222 45566632 2 224455544
No 55
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=85.47 E-value=5.8 Score=26.43 Aligned_cols=67 Identities=24% Similarity=0.273 Sum_probs=38.1
Q ss_pred EEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCCh---hhhHHHhCCCChhcccceEEEEE-eCCeEEehHHHHHHH
Q 028608 85 KMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSD---EYSIEENQGLDYKTVMGSIHAIV-SDGTVVTDVEAFRRL 158 (206)
Q Consensus 85 ~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~---~~~~l~~~gld~e~~~~~lhvv~-~dG~v~~G~dA~~~i 158 (206)
++|+-..|+.|.+..-.|..++. .++.+.+... .... ....+.+ .+.+-++. .+|.++..+.|++.-
T Consensus 2 ~Ly~~~~s~~~~~~~~~L~~~~l---~~~~~~v~~~~~~~~~~-~~~~~~p---~~~vP~l~~~~~~~l~es~aI~~y 72 (74)
T cd03051 2 KLYDSPTAPNPRRVRIFLAEKGI---DVPLVTVDLAAGEQRSP-EFLAKNP---AGTVPVLELDDGTVITESVAICRY 72 (74)
T ss_pred EEEeCCCCcchHHHHHHHHHcCC---CceEEEeecccCccCCH-HHHhhCC---CCCCCEEEeCCCCEEecHHHHHHH
Confidence 56777789999998888877653 2333333211 1111 1112222 22334443 578899999998764
No 56
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=85.30 E-value=3.7 Score=28.24 Aligned_cols=34 Identities=15% Similarity=0.318 Sum_probs=27.0
Q ss_pred EEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChh
Q 028608 85 KMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDE 121 (206)
Q Consensus 85 ~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~ 121 (206)
+||-=..||.|....++|.+++ -.+..+++..+.
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~~~~---i~~~~~di~~~~ 35 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEEHG---IAFEEINIDEQP 35 (72)
T ss_pred EEEeCCCCHHHHHHHHHHHHCC---CceEEEECCCCH
Confidence 4566678999999999998864 368888988654
No 57
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=85.00 E-value=4.5 Score=29.20 Aligned_cols=65 Identities=20% Similarity=0.299 Sum_probs=37.7
Q ss_pred CCceEEEEcCCChhhHHHHHHHHhhcc-cCCCEEEEeCCChhhhH-HHhCCCChhcccceEEEEEeCCeEE
Q 028608 81 NWKIKMLYDGDCPLCMREVNMLKERNK-QYGTIKFVDISSDEYSI-EENQGLDYKTVMGSIHAIVSDGTVV 149 (206)
Q Consensus 81 ~~~l~VlYDG~CplC~~~v~~L~r~d~-~~~~I~fvdi~s~~~~~-l~~~gld~e~~~~~lhvv~~dG~v~ 149 (206)
..-+++||..+|+.|......+.+.-. ..+.+.|..+..+.... ....++. ..= .+.++ .+|++.
T Consensus 14 ~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~l~~~~~v~--~vP-t~~i~-~~g~~v 80 (97)
T cd02949 14 RLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQEIAEAAGIM--GTP-TVQFF-KDKELV 80 (97)
T ss_pred CeEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHHHHHCCCe--ecc-EEEEE-ECCeEE
Confidence 345688999999999999888866421 12356665555432222 3455552 121 24344 577754
No 58
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=84.84 E-value=3.2 Score=36.66 Aligned_cols=40 Identities=20% Similarity=0.585 Sum_probs=28.4
Q ss_pred CCCceEEEEcCCChhhHHHHHHHHhhcccCC-CEEEEeCCC
Q 028608 80 ENWKIKMLYDGDCPLCMREVNMLKERNKQYG-TIKFVDISS 119 (206)
Q Consensus 80 ~~~~l~VlYDG~CplC~~~v~~L~r~d~~~~-~I~fvdi~s 119 (206)
+..-++.||-++|+.|...+-.|.+.-...+ .|..+++..
T Consensus 166 ~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg~~Vi~VsvD~ 206 (271)
T TIGR02740 166 KKSGLFFFFKSDCPYCHQQAPILQAFEDRYGIEVLPVSVDG 206 (271)
T ss_pred CCeEEEEEECCCCccHHHHhHHHHHHHHHcCcEEEEEeCCC
Confidence 3457899999999999999988877643222 344555544
No 59
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=84.41 E-value=3 Score=31.72 Aligned_cols=39 Identities=23% Similarity=0.251 Sum_probs=27.5
Q ss_pred CCceEEEEcCCChh-hHHHHHHHHhhcccC-----CCEEEEeCCC
Q 028608 81 NWKIKMLYDGDCPL-CMREVNMLKERNKQY-----GTIKFVDISS 119 (206)
Q Consensus 81 ~~~l~VlYDG~Cpl-C~~~v~~L~r~d~~~-----~~I~fvdi~s 119 (206)
..-+++||-.+|+. |..++..+.+.-... +.+.++.++.
T Consensus 23 k~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~ 67 (142)
T cd02968 23 KPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISV 67 (142)
T ss_pred CEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEE
Confidence 45678889999996 999988887652211 2477776653
No 60
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=84.31 E-value=4.5 Score=26.62 Aligned_cols=65 Identities=23% Similarity=0.397 Sum_probs=37.7
Q ss_pred eEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhHHHhCCCChhcccceEEEEEeCCeEEehHHH
Q 028608 84 IKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSIEENQGLDYKTVMGSIHAIVSDGTVVTDVEA 154 (206)
Q Consensus 84 l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~~l~~~gld~e~~~~~lhvv~~dG~v~~G~dA 154 (206)
+++|+=.+||.|.+....|.+.+ -.+..+++........+...+. -...+-++..+|+.+.|.+.
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~~---i~~~~~~i~~~~~~~~~~~~~~---~~~~vP~i~~~~~~i~g~~~ 66 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDERG---IPFEEVDVDEDPEALEELKKLN---GYRSVPVVVIGDEHLSGFRP 66 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHCC---CCeEEEeCCCCHHHHHHHHHHc---CCcccCEEEECCEEEecCCH
Confidence 57778788999999888887653 3577777765322111111010 01223344457788877653
No 61
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=84.14 E-value=1.7 Score=30.79 Aligned_cols=70 Identities=10% Similarity=0.033 Sum_probs=39.9
Q ss_pred CCCceEEEEcCCChhhHHHHHHHHhhc---ccCCCEEEEeCCChhhhH-HHhCCCChhcccceEEEEEeCCe--EEehH
Q 028608 80 ENWKIKMLYDGDCPLCMREVNMLKERN---KQYGTIKFVDISSDEYSI-EENQGLDYKTVMGSIHAIVSDGT--VVTDV 152 (206)
Q Consensus 80 ~~~~l~VlYDG~CplC~~~v~~L~r~d---~~~~~I~fvdi~s~~~~~-l~~~gld~e~~~~~lhvv~~dG~--v~~G~ 152 (206)
+..-+++||+.+|+.|+.....+.+.. ...+.+.+..+..+.... .+.+++.. . =.+.+++.++. .+.|.
T Consensus 13 ~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~--~-P~~~~~~~~~~~~~~~g~ 88 (102)
T TIGR01126 13 NKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDLASRFGVSG--F-PTIKFFPKGKKPVDYEGG 88 (102)
T ss_pred CCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHHHHhCCCCc--C-CEEEEecCCCcceeecCC
Confidence 344579999999999998766664432 211257777655543332 34566632 2 23545554442 35553
No 62
>PTZ00062 glutaredoxin; Provisional
Probab=84.04 E-value=4 Score=34.81 Aligned_cols=73 Identities=21% Similarity=0.281 Sum_probs=47.5
Q ss_pred CCCCceEEEEcC-----CChhhHHHHHHHHhhcccCCCEEEEeCCChhhh-H-HH-hCCCChhcccceEEEEEeCCeEEe
Q 028608 79 PENWKIKMLYDG-----DCPLCMREVNMLKERNKQYGTIKFVDISSDEYS-I-EE-NQGLDYKTVMGSIHAIVSDGTVVT 150 (206)
Q Consensus 79 ~~~~~l~VlYDG-----~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~-~-l~-~~gld~e~~~~~lhvv~~dG~v~~ 150 (206)
..+.+++||==| .||+|++.+++|.+... .+...|+..+... . +. ..|- ..+-.+.-+|+.+.
T Consensus 110 i~~~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~~i---~y~~~DI~~d~~~~~~l~~~sg~------~TvPqVfI~G~~IG 180 (204)
T PTZ00062 110 IRNHKILLFMKGSKTFPFCRFSNAVVNMLNSSGV---KYETYNIFEDPDLREELKVYSNW------PTYPQLYVNGELIG 180 (204)
T ss_pred HhcCCEEEEEccCCCCCCChhHHHHHHHHHHcCC---CEEEEEcCCCHHHHHHHHHHhCC------CCCCeEEECCEEEc
Confidence 556666777665 79999999999988643 4667788754322 1 11 1111 11223445899999
Q ss_pred hHHHHHHHHH
Q 028608 151 DVEAFRRLYE 160 (206)
Q Consensus 151 G~dA~~~il~ 160 (206)
|.+-+.++..
T Consensus 181 G~d~l~~l~~ 190 (204)
T PTZ00062 181 GHDIIKELYE 190 (204)
T ss_pred ChHHHHHHHH
Confidence 9998887665
No 63
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=83.45 E-value=3.7 Score=30.60 Aligned_cols=66 Identities=20% Similarity=0.330 Sum_probs=41.4
Q ss_pred CCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhHHHhCCCChhcccceEEEEEeCCeEEehHHHHHHHHHHc
Q 028608 90 GDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSIEENQGLDYKTVMGSIHAIVSDGTVVTDVEAFRRLYEEV 162 (206)
Q Consensus 90 G~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~~l~~~gld~e~~~~~lhvv~~dG~v~~G~dA~~~il~~l 162 (206)
|.||+|.+..-.|..+.. .++.+++......+ ....+++. +.+-++..+|.++..+.++.+.+...
T Consensus 20 g~cpf~~rvrl~L~eKgi---~ye~~~vd~~~~p~-~~~~~nP~---g~vPvL~~~~~~i~eS~~I~eYLde~ 85 (91)
T cd03061 20 GNCPFCQRLFMVLWLKGV---VFNVTTVDMKRKPE-DLKDLAPG---TQPPFLLYNGEVKTDNNKIEEFLEET 85 (91)
T ss_pred CCChhHHHHHHHHHHCCC---ceEEEEeCCCCCCH-HHHHhCCC---CCCCEEEECCEEecCHHHHHHHHHHH
Confidence 789999999888877643 35445443221111 12222322 33445566889999999999887764
No 64
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=82.82 E-value=2.4 Score=31.01 Aligned_cols=49 Identities=16% Similarity=0.164 Sum_probs=32.6
Q ss_pred ceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhH-HHhCCCC
Q 028608 83 KIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSI-EENQGLD 131 (206)
Q Consensus 83 ~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~~-l~~~gld 131 (206)
.+.+|++.+|+.|......+.+.-...+.+.|.-+.-+.... ...+|+.
T Consensus 15 ~i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~~~~e~a~~~~V~ 64 (89)
T cd03026 15 NFETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMIDGALFQDEVEERGIM 64 (89)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEEEhHhCHHHHHHcCCc
Confidence 689999999999999888887764323456655544333322 3456663
No 65
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=81.98 E-value=7.2 Score=27.06 Aligned_cols=69 Identities=10% Similarity=0.038 Sum_probs=41.1
Q ss_pred EEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCCh--hhhHHHhCCCChhcccceEEEEEeCCeEEehHHHHHHHH
Q 028608 85 KMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSD--EYSIEENQGLDYKTVMGSIHAIVSDGTVVTDVEAFRRLY 159 (206)
Q Consensus 85 ~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~--~~~~l~~~gld~e~~~~~lhvv~~dG~v~~G~dA~~~il 159 (206)
++||...|+.|.+..-.+..++. .++++.+.-. .........+++ +..+-++..||.+...+.|+..-+
T Consensus 2 ~ly~~~~s~~s~rv~~~L~e~gl---~~e~~~v~~~~~~~~~~~~~~inP---~g~vP~L~~~g~~l~Es~aI~~yL 72 (73)
T cd03052 2 VLYHWTQSFSSQKVRLVIAEKGL---RCEEYDVSLPLSEHNEPWFMRLNP---TGEVPVLIHGDNIICDPTQIIDYL 72 (73)
T ss_pred EEecCCCCccHHHHHHHHHHcCC---CCEEEEecCCcCccCCHHHHHhCc---CCCCCEEEECCEEEEcHHHHHHHh
Confidence 67888889999887766766543 3444443221 111111223333 234455566899999999988643
No 66
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=81.98 E-value=17 Score=33.97 Aligned_cols=72 Identities=10% Similarity=0.233 Sum_probs=46.7
Q ss_pred ceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhHH--HhCC---CChhcccceEEEEEeCCeEEehHHHHHH
Q 028608 83 KIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSIE--ENQG---LDYKTVMGSIHAIVSDGTVVTDVEAFRR 157 (206)
Q Consensus 83 ~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~~l--~~~g---ld~e~~~~~lhvv~~dG~v~~G~dA~~~ 157 (206)
+++||--..||.|.+..++|.+++ -.+..+++..+..... +..+ +-...-...+-.+.-+|+.+.|.+.+..
T Consensus 3 ~V~vys~~~Cp~C~~aK~~L~~~g---i~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi~~~~igGf~~l~~ 79 (410)
T PRK12759 3 EVRIYTKTNCPFCDLAKSWFGAND---IPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFVGDVHIGGYDNLMA 79 (410)
T ss_pred cEEEEeCCCCHHHHHHHHHHHHCC---CCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEECCEEEeCchHHHH
Confidence 578999999999999999998875 3577888874432111 1111 0000112233345558999999998876
No 67
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=81.73 E-value=2.3 Score=29.30 Aligned_cols=22 Identities=27% Similarity=0.458 Sum_probs=19.7
Q ss_pred eEEEEcCCChhhHHHHHHHHhh
Q 028608 84 IKMLYDGDCPLCMREVNMLKER 105 (206)
Q Consensus 84 l~VlYDG~CplC~~~v~~L~r~ 105 (206)
+++|+|=.||.|...-..+.+.
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~ 22 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKL 22 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHH
Confidence 4789999999999999999876
No 68
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=81.44 E-value=9.1 Score=27.02 Aligned_cols=65 Identities=15% Similarity=0.281 Sum_probs=41.0
Q ss_pred CCCceEEEEcCCChhhHHHHHHHHhhccc-CCCEEEEeCCChhhhH-HHhCCCChhcccceEEEEEeCCeE
Q 028608 80 ENWKIKMLYDGDCPLCMREVNMLKERNKQ-YGTIKFVDISSDEYSI-EENQGLDYKTVMGSIHAIVSDGTV 148 (206)
Q Consensus 80 ~~~~l~VlYDG~CplC~~~v~~L~r~d~~-~~~I~fvdi~s~~~~~-l~~~gld~e~~~~~lhvv~~dG~v 148 (206)
+..=++.||-.+|+-|......+.+.... ...+.|..+..+.... ...+++. ..=+ +.++ .+|+.
T Consensus 14 ~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~~~~~~~i~--~~Pt-~~~~-~~g~~ 80 (97)
T cd02984 14 SKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPEISEKFEIT--AVPT-FVFF-RNGTI 80 (97)
T ss_pred CCEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCHHHHHhcCCc--cccE-EEEE-ECCEE
Confidence 34456889999999999998888766432 3578887776553332 3455553 2322 3243 57874
No 69
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=81.10 E-value=3.8 Score=29.19 Aligned_cols=39 Identities=10% Similarity=0.183 Sum_probs=27.5
Q ss_pred CceEEEEcCCChhhHHHHHHHHhhccc---CCCEEEEeCCCh
Q 028608 82 WKIKMLYDGDCPLCMREVNMLKERNKQ---YGTIKFVDISSD 120 (206)
Q Consensus 82 ~~l~VlYDG~CplC~~~v~~L~r~d~~---~~~I~fvdi~s~ 120 (206)
.-++.||..+|+.|.....-+.+.... ...+.|..+..+
T Consensus 20 ~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~ 61 (104)
T cd02995 20 DVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDAT 61 (104)
T ss_pred cEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCc
Confidence 456789999999999988877665421 135777655543
No 70
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=81.02 E-value=2.8 Score=31.85 Aligned_cols=35 Identities=20% Similarity=0.381 Sum_probs=28.7
Q ss_pred eEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChh
Q 028608 84 IKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDE 121 (206)
Q Consensus 84 l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~ 121 (206)
++||.-..|+.|++..+||.+++. .+.++++..+.
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i---~~~~idi~~~~ 35 (111)
T cd03036 1 LKFYEYPKCSTCRKAKKWLDEHGV---DYTAIDIVEEP 35 (111)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCC---ceEEecccCCc
Confidence 478899999999999999988753 58888886543
No 71
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=80.76 E-value=9.8 Score=26.17 Aligned_cols=69 Identities=22% Similarity=0.250 Sum_probs=45.0
Q ss_pred EEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhH-HHhCCCChhcccceEEEEEeCCeEEehHHHHHHHHHHc
Q 028608 86 MLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSI-EENQGLDYKTVMGSIHAIVSDGTVVTDVEAFRRLYEEV 162 (206)
Q Consensus 86 VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~~-l~~~gld~e~~~~~lhvv~~dG~v~~G~dA~~~il~~l 162 (206)
++....||+|.+..-.++.+.. .++++++....... .... . -...+-++..||.++.++.+++.-+...
T Consensus 1 Ly~~~~Sp~~~kv~~~l~~~~i---~~~~~~v~~~~~~~~~~~~--~---p~~~vPvL~~~g~~l~dS~~I~~yL~~~ 70 (75)
T PF13417_consen 1 LYGFPGSPYSQKVRLALEEKGI---PYELVPVDPEEKRPEFLKL--N---PKGKVPVLVDDGEVLTDSAAIIEYLEER 70 (75)
T ss_dssp EEEETTSHHHHHHHHHHHHHTE---EEEEEEEBTTSTSHHHHHH--S---TTSBSSEEEETTEEEESHHHHHHHHHHH
T ss_pred CCCcCCChHHHHHHHHHHHcCC---eEEEeccCcccchhHHHhh--c---ccccceEEEECCEEEeCHHHHHHHHHHH
Confidence 4677899999999888877643 46666655433211 1111 1 1233445567899999999999877654
No 72
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=80.74 E-value=11 Score=25.57 Aligned_cols=71 Identities=15% Similarity=0.162 Sum_probs=41.7
Q ss_pred eEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhh--hHHHhCCCChhcccceEEEEEeCCeEEehHHHHHHHHH
Q 028608 84 IKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEY--SIEENQGLDYKTVMGSIHAIVSDGTVVTDVEAFRRLYE 160 (206)
Q Consensus 84 l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~--~~l~~~gld~e~~~~~lhvv~~dG~v~~G~dA~~~il~ 160 (206)
+++|+...|+.|.+..-.+...+. .+.++.+..... .......+.+ .+.+-++..+|.++..+.|++.-+.
T Consensus 2 ~~Ly~~~~s~~s~~v~~~l~~~~i---~~~~~~~~~~~~~~~~~~~~~~~P---~~~vP~l~~~g~~l~es~aI~~yL~ 74 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLCLEEKGV---DYELVPVDLTKGEHKSPEHLARNP---FGQIPALEDGDLKLFESRAITRYLA 74 (76)
T ss_pred eEEEeCCCChhHHHHHHHHHHcCC---CcEEEEeCccccccCCHHHHhhCC---CCCCCEEEECCEEEEcHHHHHHHHh
Confidence 467778889999988777766543 344444332111 0011122222 2334455567889999999987654
No 73
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=80.67 E-value=5.6 Score=33.36 Aligned_cols=68 Identities=21% Similarity=0.176 Sum_probs=39.2
Q ss_pred CceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhH-HHhCCCChhcccceEEEEEeCCeEEehHH
Q 028608 82 WKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSI-EENQGLDYKTVMGSIHAIVSDGTVVTDVE 153 (206)
Q Consensus 82 ~~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~~-l~~~gld~e~~~~~lhvv~~dG~v~~G~d 153 (206)
-.+++||..+||.|......+.+.....+.+.+..+..+.... ...+|+.. . =.+ ++..+|+.+.|..
T Consensus 135 v~I~~F~a~~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~~~~~~~~~~~V~~--v-Ptl-~i~~~~~~~~G~~ 203 (215)
T TIGR02187 135 VRIEVFVTPTCPYCPYAVLMAHKFALANDKILGEMIEANENPDLAEKYGVMS--V-PKI-VINKGVEEFVGAY 203 (215)
T ss_pred cEEEEEECCCCCCcHHHHHHHHHHHHhcCceEEEEEeCCCCHHHHHHhCCcc--C-CEE-EEecCCEEEECCC
Confidence 3567789999999998888777664323456654333322222 23455521 1 123 4455676577753
No 74
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=79.73 E-value=4.1 Score=29.47 Aligned_cols=49 Identities=14% Similarity=0.260 Sum_probs=31.2
Q ss_pred CceEEEEcCCChhhHHHHHHHHhhccc-CCCEEEEeCCChhhhH-HHhCCC
Q 028608 82 WKIKMLYDGDCPLCMREVNMLKERNKQ-YGTIKFVDISSDEYSI-EENQGL 130 (206)
Q Consensus 82 ~~l~VlYDG~CplC~~~v~~L~r~d~~-~~~I~fvdi~s~~~~~-l~~~gl 130 (206)
.-++.||-.+|+.|......+.+.... .+.+.|..+.-+.... .+..|+
T Consensus 21 ~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i 71 (104)
T cd03004 21 PWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKYESLCQQANI 71 (104)
T ss_pred eEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchHHHHHHcCC
Confidence 457889999999999988877665321 2446665554443322 234555
No 75
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=79.29 E-value=4 Score=30.91 Aligned_cols=66 Identities=14% Similarity=0.220 Sum_probs=42.0
Q ss_pred CCceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhH-HHhCCCChhcccceEEEEEeCCeEEe
Q 028608 81 NWKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSI-EENQGLDYKTVMGSIHAIVSDGTVVT 150 (206)
Q Consensus 81 ~~~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~~-l~~~gld~e~~~~~lhvv~~dG~v~~ 150 (206)
..=++.||..+|+-|......+.+.......+.|+.+..+.... .+.+++. ..=+ + ++-.+|+...
T Consensus 23 ~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~~~~~l~~~~~v~--~vPt-~-l~fk~G~~v~ 89 (113)
T cd02989 23 ERVVCHFYHPEFFRCKIMDKHLEILAKKHLETKFIKVNAEKAPFLVEKLNIK--VLPT-V-ILFKNGKTVD 89 (113)
T ss_pred CcEEEEEECCCCccHHHHHHHHHHHHHHcCCCEEEEEEcccCHHHHHHCCCc--cCCE-E-EEEECCEEEE
Confidence 34568899999999998888887765434557787776665433 2345553 2222 3 3446887554
No 76
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=78.67 E-value=5.3 Score=30.18 Aligned_cols=48 Identities=19% Similarity=0.295 Sum_probs=28.2
Q ss_pred ceEEEEc-CCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhH-HHhCCC
Q 028608 83 KIKMLYD-GDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSI-EENQGL 130 (206)
Q Consensus 83 ~l~VlYD-G~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~~-l~~~gl 130 (206)
.++|+|. .+|+.|.....++.+.....+.+.|.-+.-+.... ...+|+
T Consensus 24 ~vvv~f~a~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d~~~~l~~~~~v 73 (113)
T cd02975 24 DLVVFSSKEGCQYCEVTKQLLEELSELSDKLKLEIYDFDEDKEKAEKYGV 73 (113)
T ss_pred EEEEEeCCCCCCChHHHHHHHHHHHHhcCceEEEEEeCCcCHHHHHHcCC
Confidence 3566655 59999998888887764323445554443332222 344555
No 77
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=78.48 E-value=5 Score=31.50 Aligned_cols=35 Identities=17% Similarity=0.334 Sum_probs=29.2
Q ss_pred eEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChh
Q 028608 84 IKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDE 121 (206)
Q Consensus 84 l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~ 121 (206)
++||.-..|+.|++..+||.+++. .+.++++..+.
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~gi---~~~~idi~~~~ 36 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEHDI---PFTERNIFSSP 36 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCC---CcEEeeccCCh
Confidence 689999999999999999988753 58888886554
No 78
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=78.34 E-value=10 Score=29.83 Aligned_cols=65 Identities=8% Similarity=0.158 Sum_probs=37.9
Q ss_pred CceEEEEcCCChhhHHHHHHHHhhccc-CCC--EEEEeCCChhhhH-HHhCCCChhcccceEEEEEeCCeEE
Q 028608 82 WKIKMLYDGDCPLCMREVNMLKERNKQ-YGT--IKFVDISSDEYSI-EENQGLDYKTVMGSIHAIVSDGTVV 149 (206)
Q Consensus 82 ~~l~VlYDG~CplC~~~v~~L~r~d~~-~~~--I~fvdi~s~~~~~-l~~~gld~e~~~~~lhvv~~dG~v~ 149 (206)
.-++.||=.+|+-|......+.+.... .+. |..+++....... ...+++.. . =.+.+++.+|++.
T Consensus 22 ~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V~~--i-Pt~v~~~~~G~~v 90 (142)
T cd02950 22 PTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRVDG--I-PHFVFLDREGNEE 90 (142)
T ss_pred EEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcCCCC--C-CEEEEECCCCCEE
Confidence 356788899999999998888765321 133 4444555432222 34565532 2 2344666788754
No 79
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=77.85 E-value=5.7 Score=30.18 Aligned_cols=34 Identities=18% Similarity=0.325 Sum_probs=29.0
Q ss_pred eEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCCh
Q 028608 84 IKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSD 120 (206)
Q Consensus 84 l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~ 120 (206)
++||+-..|+.|++..+||...+ -.+.++++..+
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~g---i~~~~idi~~~ 35 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEHQ---IPFEERNLFKQ 35 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCC---CceEEEecCCC
Confidence 67999999999999999998874 46889998655
No 80
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=77.77 E-value=4.9 Score=27.05 Aligned_cols=49 Identities=24% Similarity=0.389 Sum_probs=31.6
Q ss_pred CceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhH-HHhCCC
Q 028608 82 WKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSI-EENQGL 130 (206)
Q Consensus 82 ~~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~~-l~~~gl 130 (206)
.-+++||-.+|+.|......+.+.....+.+.|..+.-..... ...+++
T Consensus 12 ~~ll~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v 61 (93)
T cd02947 12 PVVVDFWAPWCGPCKAIAPVLEELAEEYPKVKFVKVDVDENPELAEEYGV 61 (93)
T ss_pred cEEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEECCCChhHHHhcCc
Confidence 3478999999999999988887764323556666544333222 334555
No 81
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=77.48 E-value=5.1 Score=29.94 Aligned_cols=66 Identities=17% Similarity=0.347 Sum_probs=40.9
Q ss_pred CceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhHHHhCCCChhcccceEEEEEeCCeEEeh
Q 028608 82 WKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSIEENQGLDYKTVMGSIHAIVSDGTVVTD 151 (206)
Q Consensus 82 ~~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~~l~~~gld~e~~~~~lhvv~~dG~v~~G 151 (206)
.-++.||..+|+-|......+.+.......+.|+.+..+.....+.+++. ..= .+ ++..+|+....
T Consensus 26 ~vvv~F~a~~c~~C~~l~~~l~~la~~~~~v~f~~vd~~~~~l~~~~~i~--~~P-t~-~~f~~G~~v~~ 91 (113)
T cd02957 26 RVVVHFYEPGFPRCKILDSHLEELAAKYPETKFVKINAEKAFLVNYLDIK--VLP-TL-LVYKNGELIDN 91 (113)
T ss_pred EEEEEEeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEEchhhHHHHhcCCC--cCC-EE-EEEECCEEEEE
Confidence 34577999999999998888877654345677776666543112345552 121 23 34468875543
No 82
>PF13409 GST_N_2: Glutathione S-transferase, N-terminal domain; PDB: 3C8E_B 3M1G_A 3R3E_A 3O3T_A 1RK4_A 1K0O_B 1K0N_A 3QR6_A 3SWL_A 3TGZ_B ....
Probab=76.37 E-value=9.7 Score=26.04 Aligned_cols=67 Identities=25% Similarity=0.258 Sum_probs=38.8
Q ss_pred CChhhHHHHHHHHhhcccCCCEEEEeCCChhhh-HHHhCCCChhcccceEE-EEEeCCeEEehHHHHHHHHHH
Q 028608 91 DCPLCMREVNMLKERNKQYGTIKFVDISSDEYS-IEENQGLDYKTVMGSIH-AIVSDGTVVTDVEAFRRLYEE 161 (206)
Q Consensus 91 ~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~-~l~~~gld~e~~~~~lh-vv~~dG~v~~G~dA~~~il~~ 161 (206)
-||+|.+..-.+..+.. ...+.+++....... ......+++. ..+- +++.+|++...+.++.+.+..
T Consensus 1 ~sP~a~Rv~i~l~~~gl-~~~~~~v~~~~~~~~~~~~~~~~~p~---~~VP~L~~~~g~vi~eS~~I~~yL~~ 69 (70)
T PF13409_consen 1 FSPFAHRVRIALEEKGL-PYEIKVVPLIPKGEQKPPEFLALNPR---GKVPVLVDPDGTVINESLAILEYLEE 69 (70)
T ss_dssp T-HHHHHHHHHHHHHTG-TCEEEEEETTTTBCTTCHBHHHHSTT----SSSEEEETTTEEEESHHHHHHHHHH
T ss_pred CchHhHHHHHHHHHhCC-CCEEEEEeeecCccccChhhhccCcC---eEEEEEEECCCCEeeCHHHHHHHHhc
Confidence 39999999998888865 466777754211111 0001111221 1122 344689999999999887653
No 83
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=75.93 E-value=5.5 Score=30.34 Aligned_cols=35 Identities=26% Similarity=0.493 Sum_probs=29.1
Q ss_pred eEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChh
Q 028608 84 IKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDE 121 (206)
Q Consensus 84 l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~ 121 (206)
++||+=..|+.|.+..+||.+.+ -.+.++++..+.
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~---i~~~~idi~~~~ 35 (117)
T TIGR01617 1 IKVYGSPNCTTCKKARRWLEANG---IEYQFIDIGEDG 35 (117)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcC---CceEEEecCCCh
Confidence 46889999999999999998875 368899987644
No 84
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=75.81 E-value=3.5 Score=31.93 Aligned_cols=24 Identities=21% Similarity=0.504 Sum_probs=18.9
Q ss_pred CCceEEEEcCCChhhHHHHHHHHh
Q 028608 81 NWKIKMLYDGDCPLCMREVNMLKE 104 (206)
Q Consensus 81 ~~~l~VlYDG~CplC~~~v~~L~r 104 (206)
...+++|+|=.||.|...-..+.+
T Consensus 13 ~~~v~~f~d~~Cp~C~~~~~~~~~ 36 (162)
T PF13462_consen 13 PITVTEFFDFQCPHCAKFHEELEK 36 (162)
T ss_dssp SEEEEEEE-TTSHHHHHHHHHHHH
T ss_pred CeEEEEEECCCCHhHHHHHHHHhh
Confidence 457899999999999998776654
No 85
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=75.56 E-value=19 Score=28.96 Aligned_cols=35 Identities=23% Similarity=0.359 Sum_probs=25.5
Q ss_pred CceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCC
Q 028608 82 WKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDIS 118 (206)
Q Consensus 82 ~~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~ 118 (206)
.-++.||-.+||.|..++..+.+... ..+.++-++
T Consensus 65 ~vll~F~a~wC~~C~~~~p~l~~l~~--~~~~vi~V~ 99 (173)
T TIGR00385 65 PVLLNVWASWCPPCRAEHPYLNELAK--DGLPIVGVD 99 (173)
T ss_pred EEEEEEECCcCHHHHHHHHHHHHHHH--cCCEEEEEE
Confidence 45688899999999999998877743 235555443
No 86
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=75.00 E-value=3.2 Score=29.51 Aligned_cols=39 Identities=33% Similarity=0.548 Sum_probs=27.7
Q ss_pred ceEEEEcCCChhhHHHHHHHHhhccc---CCCEEEEeCCChh
Q 028608 83 KIKMLYDGDCPLCMREVNMLKERNKQ---YGTIKFVDISSDE 121 (206)
Q Consensus 83 ~l~VlYDG~CplC~~~v~~L~r~d~~---~~~I~fvdi~s~~ 121 (206)
-++.|+..+|+-|..++..|.+.-.. .+.++++.++.+.
T Consensus 4 ~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~ 45 (95)
T PF13905_consen 4 VLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDE 45 (95)
T ss_dssp EEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SS
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCC
Confidence 36789999999999999988766321 3578887776653
No 87
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=74.81 E-value=23 Score=28.67 Aligned_cols=66 Identities=20% Similarity=0.174 Sum_probs=41.2
Q ss_pred CChhhHHHHHHHHhhcccCCCEEEEeCCChhh-hH-HHh-CCCChhcccceEEEEEeCCeEEehHHHHHHHHHH
Q 028608 91 DCPLCMREVNMLKERNKQYGTIKFVDISSDEY-SI-EEN-QGLDYKTVMGSIHAIVSDGTVVTDVEAFRRLYEE 161 (206)
Q Consensus 91 ~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~-~~-l~~-~gld~e~~~~~lhvv~~dG~v~~G~dA~~~il~~ 161 (206)
.||.|.+..++|..+.. .+.-+|++.+.. .+ +.. .|-.. -...+-.+--+|+.+.|.+-+.++...
T Consensus 15 t~~~C~~ak~iL~~~~V---~~~e~DVs~~~~~~~EL~~~~g~~~--~~~tvPqVFI~G~~IGG~del~~L~e~ 83 (147)
T cd03031 15 TFEDCNNVRAILESFRV---KFDERDVSMDSGFREELRELLGAEL--KAVSLPRVFVDGRYLGGAEEVLRLNES 83 (147)
T ss_pred cChhHHHHHHHHHHCCC---cEEEEECCCCHHHHHHHHHHhCCCC--CCCCCCEEEECCEEEecHHHHHHHHHc
Confidence 69999999999987743 577778865432 22 221 12100 001233344589999999999887654
No 88
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=74.66 E-value=5.4 Score=29.58 Aligned_cols=34 Identities=18% Similarity=0.398 Sum_probs=28.0
Q ss_pred eEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCCh
Q 028608 84 IKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSD 120 (206)
Q Consensus 84 l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~ 120 (206)
++||+=..|+.|++..+||.+.+. .+.++++..+
T Consensus 1 i~iY~~~~C~~c~ka~~~L~~~~i---~~~~idi~~~ 34 (105)
T cd02977 1 ITIYGNPNCSTSRKALAWLEEHGI---EYEFIDYLKE 34 (105)
T ss_pred CEEEECCCCHHHHHHHHHHHHcCC---CcEEEeeccC
Confidence 468888999999999999988753 5888888653
No 89
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=74.20 E-value=1.2 Score=32.71 Aligned_cols=38 Identities=29% Similarity=0.442 Sum_probs=32.1
Q ss_pred ceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhh
Q 028608 83 KIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYS 123 (206)
Q Consensus 83 ~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~ 123 (206)
++++||-..||=|.-.+..+.+.. -...|++|.+....
T Consensus 3 kp~lfgsn~Cpdca~a~eyl~rl~---v~yd~VeIt~Sm~N 40 (85)
T COG4545 3 KPKLFGSNLCPDCAPAVEYLERLN---VDYDFVEITESMAN 40 (85)
T ss_pred CceeeccccCcchHHHHHHHHHcC---CCceeeehhhhhhh
Confidence 458999999999999999999875 36899999887654
No 90
>cd03054 GST_N_Metaxin GST_N family, Metaxin subfamily; composed of metaxins and related proteins. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. Metaxin 2 binds to metaxin 1 and may also play a role in protein translocation into the mitochondria. Genome sequencing shows that a third metaxin gene also exists in zebrafish, Xenopus, chicken and mammals. Sequence analysis suggests that all three metaxins share a common ancestry and that they possess similarity to GSTs. Also included in the subfamily are uncharacterized proteins with similarity to metaxins, including a novel GST from Rhodococcus with toluene o-monooxygenase and glutamylcysteine synthetase activities.
Probab=73.72 E-value=18 Score=24.44 Aligned_cols=56 Identities=16% Similarity=0.180 Sum_probs=36.6
Q ss_pred CChhhHHHHHHHHhhcccCCCEEEEeCCChhhhHHHhCCCChhcccceEEEEEeCCeEEehHHHHHHHHH
Q 028608 91 DCPLCMREVNMLKERNKQYGTIKFVDISSDEYSIEENQGLDYKTVMGSIHAIVSDGTVVTDVEAFRRLYE 160 (206)
Q Consensus 91 ~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~~l~~~gld~e~~~~~lhvv~~dG~v~~G~dA~~~il~ 160 (206)
.||.|.+...+++..+. .++.+.+.... +++ ...+-++..+|.++.++.++..-+.
T Consensus 15 ~sp~~~~v~~~L~~~~i---~~~~~~~~~~~--------~~p---~g~vP~l~~~g~~l~es~~I~~yL~ 70 (72)
T cd03054 15 LSPECLKVETYLRMAGI---PYEVVFSSNPW--------RSP---TGKLPFLELNGEKIADSEKIIEYLK 70 (72)
T ss_pred CCHHHHHHHHHHHhCCC---ceEEEecCCcc--------cCC---CcccCEEEECCEEEcCHHHHHHHHh
Confidence 79999999888877543 35555443221 121 2335566678999999999887554
No 91
>PTZ00056 glutathione peroxidase; Provisional
Probab=73.28 E-value=16 Score=30.45 Aligned_cols=37 Identities=8% Similarity=0.125 Sum_probs=26.7
Q ss_pred CceEEEEcCCChhhHHHHHHHHhhcc--cCCCEEEEeCC
Q 028608 82 WKIKMLYDGDCPLCMREVNMLKERNK--QYGTIKFVDIS 118 (206)
Q Consensus 82 ~~l~VlYDG~CplC~~~v~~L~r~d~--~~~~I~fvdi~ 118 (206)
.-++.++-.+||.|..++..|.++-. ....+.++.++
T Consensus 41 vvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~ 79 (199)
T PTZ00056 41 VLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFP 79 (199)
T ss_pred EEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEec
Confidence 34677889999999998887776632 12347777775
No 92
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=73.03 E-value=3.5 Score=32.98 Aligned_cols=37 Identities=19% Similarity=0.363 Sum_probs=28.4
Q ss_pred ceEEEEcCCChhhHHHHHHHHhhccc--CCCEEEEeCCC
Q 028608 83 KIKMLYDGDCPLCMREVNMLKERNKQ--YGTIKFVDISS 119 (206)
Q Consensus 83 ~l~VlYDG~CplC~~~v~~L~r~d~~--~~~I~fvdi~s 119 (206)
++++|||=.||+|-.....|.+.... .-.|.|.++.-
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~~l 39 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKLRAEYPDVEIEWRPFPL 39 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEEEEESS
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEEecccc
Confidence 47899999999999999888776421 35677877653
No 93
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=72.77 E-value=7.9 Score=27.55 Aligned_cols=49 Identities=18% Similarity=0.222 Sum_probs=30.0
Q ss_pred CceEEEEcCCChhhHHHHHHHHhhcc-cCCCEEEEeCCChhhhH-HHhCCC
Q 028608 82 WKIKMLYDGDCPLCMREVNMLKERNK-QYGTIKFVDISSDEYSI-EENQGL 130 (206)
Q Consensus 82 ~~l~VlYDG~CplC~~~v~~L~r~d~-~~~~I~fvdi~s~~~~~-l~~~gl 130 (206)
.-+++||-.+|+.|......+.+... ..+.+.|..+..+.... .+..|+
T Consensus 20 ~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i 70 (103)
T cd03001 20 VWLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQSLAQQYGV 70 (103)
T ss_pred cEEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcchHHHHHHCCC
Confidence 35788999999999998776655431 12456665554433222 345555
No 94
>cd03039 GST_N_Sigma_like GST_N family, Class Sigma_like; composed of GSTs belonging to class Sigma and similar proteins, including GSTs from class Mu, Pi and Alpha. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Vertebrate class Sigma GSTs are characterized as GSH-dependent hematopoietic prostaglandin (PG) D synthases and are responsible for the production of PGD2 by catalyzing the isomerization of PGH2. The functions of PGD2 include the maintenance of body temperature, inhibition of platelet aggregation, bronchoconstriction, vasodilation and mediation of allergy and inflammation. Other class Sigma
Probab=72.44 E-value=26 Score=23.51 Aligned_cols=70 Identities=17% Similarity=0.105 Sum_probs=40.6
Q ss_pred eEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhHHHhCCCChhcccceEEEEEeCCeEEehHHHHHHHH
Q 028608 84 IKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSIEENQGLDYKTVMGSIHAIVSDGTVVTDVEAFRRLY 159 (206)
Q Consensus 84 l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~~l~~~gld~e~~~~~lhvv~~dG~v~~G~dA~~~il 159 (206)
++++|...|+.|.+..-.+...+. .++.+.+............+++ ...+-++..+|..+..+.|+..-+
T Consensus 1 ~~Ly~~~~~~~~~~v~~~l~~~gi---~~e~~~~~~~~~~~~~~~~~~p---~~~vP~L~~~~~~l~es~aI~~yL 70 (72)
T cd03039 1 YKLTYFNIRGRGEPIRLLLADAGV---EYEDVRITYEEWPELDLKPTLP---FGQLPVLEIDGKKLTQSNAILRYL 70 (72)
T ss_pred CEEEEEcCcchHHHHHHHHHHCCC---CcEEEEeCHHHhhhhhhccCCc---CCCCCEEEECCEEEEecHHHHHHh
Confidence 367888899999977666665543 3444444322111111222333 233455556788999999887654
No 95
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=72.25 E-value=30 Score=25.19 Aligned_cols=63 Identities=13% Similarity=0.254 Sum_probs=36.5
Q ss_pred CceEEEEcCCChhhHHHHHHHHhhcccC--CCEEEEeCCChhhhHHHhCCCChhcccceEEEEEeCCeE
Q 028608 82 WKIKMLYDGDCPLCMREVNMLKERNKQY--GTIKFVDISSDEYSIEENQGLDYKTVMGSIHAIVSDGTV 148 (206)
Q Consensus 82 ~~l~VlYDG~CplC~~~v~~L~r~d~~~--~~I~fvdi~s~~~~~l~~~gld~e~~~~~lhvv~~dG~v 148 (206)
.-++.||=.+|+-|......+.+..... ..+.|..+..+.....+.+++..- = .+ ++..+|+.
T Consensus 19 ~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d~~~~~~~~~v~~~--P-t~-~~~~~g~~ 83 (102)
T cd02948 19 LTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEADTIDTLKRYRGKCE--P-TF-LFYKNGEL 83 (102)
T ss_pred eEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCCCHHHHHHcCCCcC--c-EE-EEEECCEE
Confidence 3468899999999999888776652211 235666554442222345555321 1 23 34468874
No 96
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=72.07 E-value=18 Score=25.49 Aligned_cols=63 Identities=10% Similarity=0.198 Sum_probs=38.2
Q ss_pred CceEEEEcCCChhhHHHHHHHHhhccc-CCCEEEEeCCChhhhH-HHhCCCChhcccceEEEEEeCCeE
Q 028608 82 WKIKMLYDGDCPLCMREVNMLKERNKQ-YGTIKFVDISSDEYSI-EENQGLDYKTVMGSIHAIVSDGTV 148 (206)
Q Consensus 82 ~~l~VlYDG~CplC~~~v~~L~r~d~~-~~~I~fvdi~s~~~~~-l~~~gld~e~~~~~lhvv~~dG~v 148 (206)
.-++.||-.+|+-|......+.+.... .+.+.|..+..+.... ...+++. .. =.+.++ .+|+.
T Consensus 14 ~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~i~--~~-Pt~~~~-~~g~~ 78 (96)
T cd02956 14 PVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQIAQQFGVQ--AL-PTVYLF-AAGQP 78 (96)
T ss_pred eEEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCHHHHHHcCCC--CC-CEEEEE-eCCEE
Confidence 457889999999999998888665321 2356666655444333 3345553 12 224344 48864
No 97
>cd03050 GST_N_Theta GST_N family, Class Theta subfamily; composed of eukaryotic class Theta GSTs and bacterial dichloromethane (DCM) dehalogenase. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Mammalian class Theta GSTs show poor GSH conjugating activity towards the standard substrates, CDNB and ethacrynic acid, differentiating them from other mammalian GSTs. GSTT1-1 shows similar cataytic activity as bacterial DCM dehalogenase, catalyzing the GSH-dependent hydrolytic dehalogenation of dihalomethanes. This is an essential process in methylotrophic bacteria to enable them to use chloromethane and DC
Probab=71.82 E-value=26 Score=23.79 Aligned_cols=71 Identities=18% Similarity=0.151 Sum_probs=40.2
Q ss_pred eEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhh--hHHHhCCCChhcccceEEEEEeCCeEEehHHHHHHHHH
Q 028608 84 IKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEY--SIEENQGLDYKTVMGSIHAIVSDGTVVTDVEAFRRLYE 160 (206)
Q Consensus 84 l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~--~~l~~~gld~e~~~~~lhvv~~dG~v~~G~dA~~~il~ 160 (206)
++++++..++.|++..-.+...+. .+..+.+..... .......+.+ ...+-++..+|.+...+.|++.-+.
T Consensus 1 ~~ly~~~~s~~~~~v~~~l~~~g~---~~~~~~v~~~~~~~~~~~~~~~~p---~~~vP~L~~~~~~l~eS~aI~~Yl~ 73 (76)
T cd03050 1 LKLYYDLMSQPSRAVYIFLKLNKI---PFEECPIDLRKGEQLTPEFKKINP---FGKVPAIVDGDFTLAESVAILRYLA 73 (76)
T ss_pred CEEeeCCCChhHHHHHHHHHHcCC---CcEEEEecCCCCCcCCHHHHHhCc---CCCCCEEEECCEEEEcHHHHHHHHH
Confidence 368888999999877666766543 244333321111 0001112222 2334455567889999999887554
No 98
>cd03049 GST_N_3 GST_N family, unknown subfamily 3; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=71.47 E-value=22 Score=23.97 Aligned_cols=70 Identities=17% Similarity=0.238 Sum_probs=39.9
Q ss_pred eEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhHHHhCCCChhcccceEEEE-EeCCeEEehHHHHHHH
Q 028608 84 IKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSIEENQGLDYKTVMGSIHAI-VSDGTVVTDVEAFRRL 158 (206)
Q Consensus 84 l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~~l~~~gld~e~~~~~lhvv-~~dG~v~~G~dA~~~i 158 (206)
+++|+.-.||.|.+..-.+..... +-.++.+.+....... ....+.+ ...+-++ ++||.....+.|++.-
T Consensus 1 ~~Ly~~~~s~~~~~~~~~l~~~~~-~i~~~~~~~~~~~~~~-~~~~~~p---~~~vP~l~~~~g~~l~es~aI~~y 71 (73)
T cd03049 1 MKLLYSPTSPYVRKVRVAAHETGL-GDDVELVLVNPWSDDE-SLLAVNP---LGKIPALVLDDGEALFDSRVICEY 71 (73)
T ss_pred CEEecCCCCcHHHHHHHHHHHhCC-CCCcEEEEcCcccCCh-HHHHhCC---CCCCCEEEECCCCEEECHHHHHhh
Confidence 367888899999988777766322 2345555554221111 1111222 2233344 3688899999998764
No 99
>cd03080 GST_N_Metaxin_like GST_N family, Metaxin subfamily, Metaxin-like proteins; a heterogenous group of proteins, predominantly uncharacterized, with similarity to metaxins and GSTs. Metaxin 1 is a component of a preprotein import complex of the mitochondrial outer membrane. It extends to the cytosol and is anchored to the mitochondrial membrane through its C-terminal domain. In mice, metaxin is required for embryonic development. In humans, alterations in the metaxin gene may be associated with Gaucher disease. One characterized member of this subgroup is a novel GST from Rhodococcus with toluene o-monooxygenase and gamma-glutamylcysteine synthetase activities. Also members are the cadmium-inducible lysosomal protein CDR-1 and its homologs from C. elegans, and the failed axon connections (fax) protein from Drosophila. CDR-1 is an integral membrane protein that functions to protect against cadmium toxicity and may also have a role in osmoregulation to maintain salt balance in C. ele
Probab=71.12 E-value=30 Score=23.64 Aligned_cols=57 Identities=18% Similarity=0.162 Sum_probs=35.8
Q ss_pred CChhhHHHHHHHHhhcccCCCEEEEeCCChhhhHHHhCCCChhcccceEEEEEeCCeEEehHHHHHHHHHH
Q 028608 91 DCPLCMREVNMLKERNKQYGTIKFVDISSDEYSIEENQGLDYKTVMGSIHAIVSDGTVVTDVEAFRRLYEE 161 (206)
Q Consensus 91 ~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~~l~~~gld~e~~~~~lhvv~~dG~v~~G~dA~~~il~~ 161 (206)
.||+|.+...+|+..+. .++++.+... .+++ .+.+-++..+|+++.++.|+++-+..
T Consensus 16 ~sp~~~~v~~~L~~~gi---~~~~~~~~~~--------~~~p---~g~vPvl~~~g~~l~eS~~I~~yL~~ 72 (75)
T cd03080 16 LSPFCLKVETFLRMAGI---PYENKFGGLA--------KRSP---KGKLPFIELNGEKIADSELIIDHLEE 72 (75)
T ss_pred CCHHHHHHHHHHHHCCC---CcEEeecCcc--------cCCC---CCCCCEEEECCEEEcCHHHHHHHHHH
Confidence 47999998888876643 3444443321 1111 23344555689999999998876653
No 100
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=70.98 E-value=7.1 Score=27.33 Aligned_cols=64 Identities=19% Similarity=0.309 Sum_probs=36.4
Q ss_pred CCceEEEEcCCChhhHHHHHHHHhhc-ccCCCEEEEeCCChhhhH-HHhCCCChhcccceEEEEEeCCeE
Q 028608 81 NWKIKMLYDGDCPLCMREVNMLKERN-KQYGTIKFVDISSDEYSI-EENQGLDYKTVMGSIHAIVSDGTV 148 (206)
Q Consensus 81 ~~~l~VlYDG~CplC~~~v~~L~r~d-~~~~~I~fvdi~s~~~~~-l~~~gld~e~~~~~lhvv~~dG~v 148 (206)
..-++.||-.+|+.|+.....+.+.- ...+.+.|..+..+.... ...+|+. ..= .+.+. .+|+.
T Consensus 15 ~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~--~~P-~~~~~-~~g~~ 80 (101)
T TIGR01068 15 KPVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPDIAAKYGIR--SIP-TLLLF-KNGKE 80 (101)
T ss_pred CcEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCC--cCC-EEEEE-eCCcE
Confidence 35578999999999998887776653 112346665554332222 3455553 222 23233 56663
No 101
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=70.69 E-value=9.1 Score=27.10 Aligned_cols=49 Identities=12% Similarity=0.157 Sum_probs=31.3
Q ss_pred CceEEEEcCCChhhHHHHHHHHhhccc---CCCEEEEeCCChh-hhH-HHhCCC
Q 028608 82 WKIKMLYDGDCPLCMREVNMLKERNKQ---YGTIKFVDISSDE-YSI-EENQGL 130 (206)
Q Consensus 82 ~~l~VlYDG~CplC~~~v~~L~r~d~~---~~~I~fvdi~s~~-~~~-l~~~gl 130 (206)
.-++.||..+|+.|+.....+...... .+.+.+..+.... ... ....++
T Consensus 20 ~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i 73 (105)
T cd02998 20 DVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGV 73 (105)
T ss_pred cEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCC
Confidence 457899999999999887766554321 2457777666444 222 344555
No 102
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=70.22 E-value=7.3 Score=29.59 Aligned_cols=40 Identities=15% Similarity=0.357 Sum_probs=27.7
Q ss_pred ceEEEE-cCCChhhHHHHHHHHhhccc--CCCEEEEeCCChhh
Q 028608 83 KIKMLY-DGDCPLCMREVNMLKERNKQ--YGTIKFVDISSDEY 122 (206)
Q Consensus 83 ~l~VlY-DG~CplC~~~v~~L~r~d~~--~~~I~fvdi~s~~~ 122 (206)
-++++| -.+||.|..++.-|.+.-.. ...+.++.++.+..
T Consensus 26 ~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~ 68 (149)
T cd02970 26 VVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESP 68 (149)
T ss_pred EEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCH
Confidence 445555 78999999999988776321 24577887776543
No 103
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=70.20 E-value=5.9 Score=29.72 Aligned_cols=37 Identities=16% Similarity=0.247 Sum_probs=29.0
Q ss_pred CceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCC
Q 028608 82 WKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISS 119 (206)
Q Consensus 82 ~~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s 119 (206)
.-++.||-.+||.|..++..+.+... ...+.++.++.
T Consensus 27 ~vvv~F~a~~C~~C~~~~~~l~~l~~-~~~~~vv~v~~ 63 (127)
T cd03010 27 PYLLNVWASWCAPCREEHPVLMALAR-QGRVPIYGINY 63 (127)
T ss_pred EEEEEEEcCcCHHHHHHHHHHHHHHH-hcCcEEEEEEC
Confidence 45789999999999999999987754 23477776663
No 104
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=70.10 E-value=23 Score=29.07 Aligned_cols=66 Identities=15% Similarity=0.293 Sum_probs=42.7
Q ss_pred CceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhHHHhCCCChhcccceEEEEEeCCeEEeh
Q 028608 82 WKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSIEENQGLDYKTVMGSIHAIVSDGTVVTD 151 (206)
Q Consensus 82 ~~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~~l~~~gld~e~~~~~lhvv~~dG~v~~G 151 (206)
.-++-||-.+|+-|......|.++......+.|+-+..+.......+++. .+ =.+ ++..+|+....
T Consensus 85 ~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d~~~l~~~f~v~--~v-PTl-llyk~G~~v~~ 150 (175)
T cd02987 85 TVVVHIYEPGIPGCAALNSSLLCLAAEYPAVKFCKIRASATGASDEFDTD--AL-PAL-LVYKGGELIGN 150 (175)
T ss_pred EEEEEEECCCCchHHHHHHHHHHHHHHCCCeEEEEEeccchhhHHhCCCC--CC-CEE-EEEECCEEEEE
Confidence 34566999999999988888877754456799998887643112334442 22 234 44578886543
No 105
>PRK09381 trxA thioredoxin; Provisional
Probab=69.90 E-value=18 Score=26.34 Aligned_cols=64 Identities=14% Similarity=0.257 Sum_probs=35.7
Q ss_pred CCceEEEEcCCChhhHHHHHHHHhhcc-cCCCEEEE--eCCChhhhHHHhCCCChhcccceEEEEEeCCeEE
Q 028608 81 NWKIKMLYDGDCPLCMREVNMLKERNK-QYGTIKFV--DISSDEYSIEENQGLDYKTVMGSIHAIVSDGTVV 149 (206)
Q Consensus 81 ~~~l~VlYDG~CplC~~~v~~L~r~d~-~~~~I~fv--di~s~~~~~l~~~gld~e~~~~~lhvv~~dG~v~ 149 (206)
..-++.||-.+||.|......+.+... ..+.+.|. +....... ...+++. ..=+ + ++..+|+..
T Consensus 22 ~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~~-~~~~~v~--~~Pt-~-~~~~~G~~~ 88 (109)
T PRK09381 22 GAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGT-APKYGIR--GIPT-L-LLFKNGEVA 88 (109)
T ss_pred CeEEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChhH-HHhCCCC--cCCE-E-EEEeCCeEE
Confidence 345788999999999999877765421 12334444 44433221 2345542 2222 3 334688744
No 106
>PRK12559 transcriptional regulator Spx; Provisional
Probab=69.78 E-value=9.8 Score=29.95 Aligned_cols=35 Identities=17% Similarity=0.323 Sum_probs=28.6
Q ss_pred eEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChh
Q 028608 84 IKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDE 121 (206)
Q Consensus 84 l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~ 121 (206)
++||.-..|+.|++..+||...+. .+.++++..+.
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~gi---~~~~~di~~~~ 36 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEENQI---DYTEKNIVSNS 36 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHcCC---CeEEEEeeCCc
Confidence 689999999999999999988753 57888776443
No 107
>PRK10996 thioredoxin 2; Provisional
Probab=69.66 E-value=24 Score=27.54 Aligned_cols=64 Identities=16% Similarity=0.287 Sum_probs=37.7
Q ss_pred CceEEEEcCCChhhHHHHHHHHhhcc-cCCCEEEEeCCChhhhH-HHhCCCChhcccceEEEEEeCCeEE
Q 028608 82 WKIKMLYDGDCPLCMREVNMLKERNK-QYGTIKFVDISSDEYSI-EENQGLDYKTVMGSIHAIVSDGTVV 149 (206)
Q Consensus 82 ~~l~VlYDG~CplC~~~v~~L~r~d~-~~~~I~fvdi~s~~~~~-l~~~gld~e~~~~~lhvv~~dG~v~ 149 (206)
.-++.||-.+|+.|......+.+.-. ..+.+.|+.+..+.... ...+++.- .=+ + ++..+|+.+
T Consensus 54 ~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~V~~--~Pt-l-ii~~~G~~v 119 (139)
T PRK10996 54 PVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAERELSARFRIRS--IPT-I-MIFKNGQVV 119 (139)
T ss_pred eEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCHHHHHhcCCCc--cCE-E-EEEECCEEE
Confidence 45788999999999988776655421 13467776554443222 34555521 212 3 334688854
No 108
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=69.52 E-value=7.1 Score=28.76 Aligned_cols=40 Identities=15% Similarity=0.366 Sum_probs=28.1
Q ss_pred CCCceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCC
Q 028608 80 ENWKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISS 119 (206)
Q Consensus 80 ~~~~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s 119 (206)
+..-++.||=.+|+.|......+.+.....+.+.|+.+..
T Consensus 18 g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~~~~~~vd~ 57 (100)
T cd02999 18 EDYTAVLFYASWCPFSASFRPHFNALSSMFPQIRHLAIEE 57 (100)
T ss_pred CCEEEEEEECCCCHHHHhHhHHHHHHHHHhccCceEEEEC
Confidence 3445788999999999999888876643234466665544
No 109
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=69.44 E-value=11 Score=27.18 Aligned_cols=49 Identities=18% Similarity=0.318 Sum_probs=30.0
Q ss_pred CceEEEEcCCChhhHHHHHHHHhhccc-CCCEEEEeCCChhhhH-HHhCCC
Q 028608 82 WKIKMLYDGDCPLCMREVNMLKERNKQ-YGTIKFVDISSDEYSI-EENQGL 130 (206)
Q Consensus 82 ~~l~VlYDG~CplC~~~v~~L~r~d~~-~~~I~fvdi~s~~~~~-l~~~gl 130 (206)
.-++.||-.+|+-|......+.+.... .+.+.|..+.-+.... .+..++
T Consensus 20 ~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~~~~~~~v 70 (101)
T cd03003 20 IWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRMLCRSQGV 70 (101)
T ss_pred eEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccHHHHHHcCC
Confidence 346889999999999988877665321 2446665444333222 334555
No 110
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=69.04 E-value=40 Score=25.89 Aligned_cols=37 Identities=16% Similarity=0.294 Sum_probs=28.6
Q ss_pred ceEEEEcCCChhhHHHHHHHHhhcc-cCCCEEEEeCCC
Q 028608 83 KIKMLYDGDCPLCMREVNMLKERNK-QYGTIKFVDISS 119 (206)
Q Consensus 83 ~l~VlYDG~CplC~~~v~~L~r~d~-~~~~I~fvdi~s 119 (206)
-++.||=.+||.|+...-.|.+... ....+-++++..
T Consensus 26 ~iv~f~~~~Cp~C~~~~P~l~~~~~~~~~~~y~vdvd~ 63 (122)
T TIGR01295 26 ATFFIGRKTCPYCRKFSGTLSGVVAQTKAPIYYIDSEN 63 (122)
T ss_pred EEEEEECCCChhHHHHhHHHHHHHHhcCCcEEEEECCC
Confidence 4688999999999999888877643 124588888874
No 111
>PRK10387 glutaredoxin 2; Provisional
Probab=68.75 E-value=35 Score=27.64 Aligned_cols=71 Identities=13% Similarity=0.323 Sum_probs=44.4
Q ss_pred eEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhHHHhCCCChhcccceEEEE-EeCCeEEehHHHHHHHHHHc
Q 028608 84 IKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSIEENQGLDYKTVMGSIHAI-VSDGTVVTDVEAFRRLYEEV 162 (206)
Q Consensus 84 l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~~l~~~gld~e~~~~~lhvv-~~dG~v~~G~dA~~~il~~l 162 (206)
+++++...||.|.+..-.+..+. -.++.+.+....... ...+.+ ...+-++ ..+|.++..+.|++.-+...
T Consensus 1 ~~Ly~~~~sp~~~kv~~~L~~~g---i~y~~~~~~~~~~~~--~~~~~p---~~~VPvL~~~~g~~l~eS~aI~~yL~~~ 72 (210)
T PRK10387 1 MKLYIYDHCPFCVKARMIFGLKN---IPVELIVLANDDEAT--PIRMIG---QKQVPILQKDDGSYMPESLDIVHYIDEL 72 (210)
T ss_pred CEEEeCCCCchHHHHHHHHHHcC---CCeEEEEcCCCchhh--HHHhcC---CcccceEEecCCeEecCHHHHHHHHHHh
Confidence 36788899999998766666553 235555553221111 111111 3456565 56899999999999988764
No 112
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=68.62 E-value=7.2 Score=29.43 Aligned_cols=41 Identities=20% Similarity=0.515 Sum_probs=28.2
Q ss_pred CceEEEE-cCCChhhHHHHHHHHhhccc--CCCEEEEeCCChhh
Q 028608 82 WKIKMLY-DGDCPLCMREVNMLKERNKQ--YGTIKFVDISSDEY 122 (206)
Q Consensus 82 ~~l~VlY-DG~CplC~~~v~~L~r~d~~--~~~I~fvdi~s~~~ 122 (206)
..++++| ..+|+.|...+..|.+.-.+ ...+.++.++.+..
T Consensus 24 ~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~~ 67 (140)
T cd02971 24 WVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDSP 67 (140)
T ss_pred eEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCH
Confidence 3455556 88999999998888765321 24577777776543
No 113
>PF06200 tify: tify domain; InterPro: IPR010399 The tify domain is a 36-amino acid domain only found among Embryophyta (land plants). It has been named after the most conserved amino acid pattern (TIF[F/Y]XG) it contains, but was previously known as the Zim domain. As the use of uppercase characters (TIFY) might imply that the domain is fully conserved across proteins, a lowercase lettering has been chosen in an attempt to highlight the reality of its natural variability. Based on the domain architecture, tify domain containing proteins can be classified into two groups. Group I is formed by proteins possessing a CCT (CONSTANS, CO-like, and TOC1) domain and a GATA-type zinc finger in addition to the tify domain. Group II contains proteins characterised by the tify domain but lacking a GATA-type zinc finger. Tify domain containing proteins might be involved in developmental processes and some of them have features that are characteristic for transcription factors: a nuclear localisation and the presence of a putative DNA-binding domain []. Some proteins known to contain a tify domain include: Arabidopsis thaliana Zinc-finger protein expressed in Inflorescence Meristem (ZIM), a putative transcription factor involved in inflorescence and flower development [, ]. A. thaliana ZIM-like proteins (ZML) []. A. thaliana PEAPOD1 and PEAPOD2 (PPD1 and PPD2) [].
Probab=68.50 E-value=4.6 Score=25.32 Aligned_cols=19 Identities=26% Similarity=0.518 Sum_probs=15.0
Q ss_pred CCCCCceEEEEcCCChhhH
Q 028608 78 SPENWKIKMLYDGDCPLCM 96 (206)
Q Consensus 78 ~~~~~~l~VlYDG~CplC~ 96 (206)
.++..+++|||+|..-.+.
T Consensus 2 ~~~~~qLTIfY~G~V~Vfd 20 (36)
T PF06200_consen 2 SPETAQLTIFYGGQVCVFD 20 (36)
T ss_pred CCCCCcEEEEECCEEEEeC
Confidence 4577899999999876654
No 114
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=67.70 E-value=11 Score=24.76 Aligned_cols=35 Identities=26% Similarity=0.561 Sum_probs=28.1
Q ss_pred eEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChh
Q 028608 84 IKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDE 121 (206)
Q Consensus 84 l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~ 121 (206)
++||-=-.||.|.+..++|.+.+. .+.++++.++.
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~~i---~y~~~dv~~~~ 35 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEKGI---PYEEVDVDEDE 35 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTB---EEEEEEGGGSH
T ss_pred cEEEEcCCCcCHHHHHHHHHHcCC---eeeEcccccch
Confidence 356667899999999999987653 58888988863
No 115
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=67.22 E-value=7.8 Score=29.74 Aligned_cols=24 Identities=25% Similarity=0.463 Sum_probs=20.1
Q ss_pred CceEEEEcC-CChhhHHHHHHHHhh
Q 028608 82 WKIKMLYDG-DCPLCMREVNMLKER 105 (206)
Q Consensus 82 ~~l~VlYDG-~CplC~~~v~~L~r~ 105 (206)
.-++.+|-+ +||.|..++-.+.++
T Consensus 30 ~~vv~f~~~~~Cp~C~~~~p~l~~l 54 (146)
T PF08534_consen 30 PVVVNFWASAWCPPCRKELPYLNEL 54 (146)
T ss_dssp EEEEEEESTTTSHHHHHHHHHHHHH
T ss_pred eEEEEEEccCCCCcchhhhhhHHhh
Confidence 357889999 999999999777666
No 116
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=66.72 E-value=11 Score=28.36 Aligned_cols=35 Identities=20% Similarity=0.274 Sum_probs=28.9
Q ss_pred eEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChh
Q 028608 84 IKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDE 121 (206)
Q Consensus 84 l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~ 121 (206)
++||.-..|+-|++..+||...+ -.+.++++..+.
T Consensus 1 i~iy~~~~C~~crka~~~L~~~~---i~~~~~di~~~p 35 (105)
T cd03035 1 ITLYGIKNCDTVKKARKWLEARG---VAYTFHDYRKDG 35 (105)
T ss_pred CEEEeCCCCHHHHHHHHHHHHcC---CCeEEEecccCC
Confidence 47899999999999999998874 468888887553
No 117
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=65.62 E-value=14 Score=27.01 Aligned_cols=49 Identities=12% Similarity=0.201 Sum_probs=29.8
Q ss_pred CceEEEEcCCChhhHHHHHHHHhhcc-------cCCCEEEEeCCChhhhH-HHhCCC
Q 028608 82 WKIKMLYDGDCPLCMREVNMLKERNK-------QYGTIKFVDISSDEYSI-EENQGL 130 (206)
Q Consensus 82 ~~l~VlYDG~CplC~~~v~~L~r~d~-------~~~~I~fvdi~s~~~~~-l~~~gl 130 (206)
.-++.||-.+|+.|......+.+... ..+.+.|..+..+.... ...+|+
T Consensus 20 ~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v 76 (108)
T cd02996 20 LVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRI 76 (108)
T ss_pred EEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCC
Confidence 34688999999999998877754421 01347665444332222 345666
No 118
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=65.53 E-value=8.5 Score=30.21 Aligned_cols=37 Identities=5% Similarity=0.036 Sum_probs=27.0
Q ss_pred CceEEEEcCCChhhHHHHHHHHhhcc--cCCCEEEEeCCC
Q 028608 82 WKIKMLYDGDCPLCMREVNMLKERNK--QYGTIKFVDISS 119 (206)
Q Consensus 82 ~~l~VlYDG~CplC~~~v~~L~r~d~--~~~~I~fvdi~s 119 (206)
.-++.|+..+|| |..++..|.++-. ....+.++.++.
T Consensus 24 ~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~ 62 (152)
T cd00340 24 VLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPC 62 (152)
T ss_pred EEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEecc
Confidence 356778999999 9999988876532 124588887753
No 119
>PRK15113 glutathione S-transferase; Provisional
Probab=65.33 E-value=42 Score=27.62 Aligned_cols=76 Identities=21% Similarity=0.250 Sum_probs=44.5
Q ss_pred ceEEEEcC--CChhhHHHHHHHHhhcccCCCEEEEeCCChhhhHHHhCCCChhcccceEEEEEeCCeEEehHHHHHHHHH
Q 028608 83 KIKMLYDG--DCPLCMREVNMLKERNKQYGTIKFVDISSDEYSIEENQGLDYKTVMGSIHAIVSDGTVVTDVEAFRRLYE 160 (206)
Q Consensus 83 ~l~VlYDG--~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~~l~~~gld~e~~~~~lhvv~~dG~v~~G~dA~~~il~ 160 (206)
.+++|++. .|+.|.+..-.+...+.. =.+..+++...+....+...+++ +..+-++..+|.++..+.|++.-+.
T Consensus 5 ~~~Ly~~~~~~s~~~~rv~~~l~e~gi~-~e~~~v~~~~~~~~~~~~~~~nP---~g~VP~L~~~~~~l~ES~aI~~YL~ 80 (214)
T PRK15113 5 AITLYSDAHFFSPYVMSAFVALQEKGLP-FELKTVDLDAGEHLQPTYQGYSL---TRRVPTLQHDDFELSESSAIAEYLE 80 (214)
T ss_pred eEEEEeCCCCCCchHHHHHHHHHHcCCC-CeEEEeCCCCccccCHHHHhcCC---CCCCCEEEECCEEEecHHHHHHHHH
Confidence 46788864 699998877777766542 12233333221111112222332 3445566668889999999988766
Q ss_pred Hc
Q 028608 161 EV 162 (206)
Q Consensus 161 ~l 162 (206)
..
T Consensus 81 ~~ 82 (214)
T PRK15113 81 ER 82 (214)
T ss_pred HH
Confidence 54
No 120
>TIGR02182 GRXB Glutaredoxin, GrxB family. This model includes the highly abundant E. coli GrxB (Grx2) glutaredoxin which is notably longer than either GrxA or GrxC. Unlike the other two E. coli glutaredoxins, GrxB appears to be unable to reduce ribonucleotide reductase, and may have more to do with resistance to redox stress.
Probab=65.12 E-value=33 Score=28.35 Aligned_cols=69 Identities=12% Similarity=0.269 Sum_probs=41.5
Q ss_pred EEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhHHHhCCCChhcccceEEEEE-eCCeEEehHHHHHHHHHHc
Q 028608 86 MLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSIEENQGLDYKTVMGSIHAIV-SDGTVVTDVEAFRRLYEEV 162 (206)
Q Consensus 86 VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~~l~~~gld~e~~~~~lhvv~-~dG~v~~G~dA~~~il~~l 162 (206)
+|+-..||+|.+..-.|..+.. .++.+++........ ..+++ .+.+-++. .+|.++.++.|+++-+...
T Consensus 2 Ly~~~~sp~~~kvr~~L~~~gl---~~e~~~~~~~~~~~~--~~~np---~g~vP~l~~~~g~~l~es~~I~~yL~~~ 71 (209)
T TIGR02182 2 LYIYDHCPFCVRARMIFGLKNI---PVEKHVLLNDDEETP--IRMIG---AKQVPILQKDDGRAMPESLDIVAYFDKL 71 (209)
T ss_pred eecCCCCChHHHHHHHHHHcCC---CeEEEECCCCcchhH--HHhcC---CCCcceEEeeCCeEeccHHHHHHHHHHh
Confidence 5667779999988777766532 345555433221111 11111 23444443 6889999999999876654
No 121
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=65.02 E-value=12 Score=27.03 Aligned_cols=38 Identities=16% Similarity=0.199 Sum_probs=25.1
Q ss_pred CceEEEEcCCChhhHHHHHHHHhhcc-cCCCEEEE--eCCC
Q 028608 82 WKIKMLYDGDCPLCMREVNMLKERNK-QYGTIKFV--DISS 119 (206)
Q Consensus 82 ~~l~VlYDG~CplC~~~v~~L~r~d~-~~~~I~fv--di~s 119 (206)
.-++.||..+|+.|......+.+... ..+.+.+. +...
T Consensus 20 ~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~ 60 (109)
T cd03002 20 TTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDE 60 (109)
T ss_pred eEEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCc
Confidence 36899999999999988766655421 12345554 5444
No 122
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=63.22 E-value=10 Score=26.86 Aligned_cols=37 Identities=14% Similarity=0.279 Sum_probs=24.6
Q ss_pred ceEEEEcCCChhhHHHHHHHHhhcc--c--CCCEEEEeCCC
Q 028608 83 KIKMLYDGDCPLCMREVNMLKERNK--Q--YGTIKFVDISS 119 (206)
Q Consensus 83 ~l~VlYDG~CplC~~~v~~L~r~d~--~--~~~I~fvdi~s 119 (206)
-++.||-.+|+-|.....-+.+... . ...+.|..+.-
T Consensus 19 ~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~ 59 (102)
T cd03005 19 HFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDC 59 (102)
T ss_pred EEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEEC
Confidence 6789999999999988776654421 0 12466665543
No 123
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=63.06 E-value=8.6 Score=30.27 Aligned_cols=26 Identities=15% Similarity=0.349 Sum_probs=21.7
Q ss_pred CCCceEEEEcCCChhhHHHHHHHHhh
Q 028608 80 ENWKIKMLYDGDCPLCMREVNMLKER 105 (206)
Q Consensus 80 ~~~~l~VlYDG~CplC~~~v~~L~r~ 105 (206)
....+++|||=.||.|...-..+.+.
T Consensus 15 ~~~~i~~f~D~~Cp~C~~~~~~~~~~ 40 (178)
T cd03019 15 GKPEVIEFFSYGCPHCYNFEPILEAW 40 (178)
T ss_pred CCcEEEEEECCCCcchhhhhHHHHHH
Confidence 34578999999999999998887655
No 124
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=62.77 E-value=16 Score=28.84 Aligned_cols=35 Identities=17% Similarity=0.316 Sum_probs=28.8
Q ss_pred eEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChh
Q 028608 84 IKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDE 121 (206)
Q Consensus 84 l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~ 121 (206)
++||.=..|+.|+...+||..++ -.+.++++..+.
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~~---i~~~~~d~~~~~ 36 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNAHQ---LSYKEQNLGKEP 36 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHHcC---CCeEEEECCCCC
Confidence 67899999999999999998874 358888886543
No 125
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=62.21 E-value=23 Score=29.44 Aligned_cols=24 Identities=17% Similarity=0.483 Sum_probs=18.9
Q ss_pred CceEEEE-cCCChhhHHHHHHHHhh
Q 028608 82 WKIKMLY-DGDCPLCMREVNMLKER 105 (206)
Q Consensus 82 ~~l~VlY-DG~CplC~~~v~~L~r~ 105 (206)
+-++.|| -.+||.|..++.-+.+.
T Consensus 33 ~vvL~F~P~~~~p~C~~el~~l~~~ 57 (187)
T PRK10382 33 WSVFFFYPADFTFVCPTELGDVADH 57 (187)
T ss_pred eEEEEEECCCCCCcCHHHHHHHHHH
Confidence 4566667 78899999999877665
No 126
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=62.05 E-value=13 Score=28.43 Aligned_cols=40 Identities=15% Similarity=0.317 Sum_probs=29.7
Q ss_pred CceEEEEcCC-ChhhHHHHHHHHhhcccCCCEEEEeCCChh
Q 028608 82 WKIKMLYDGD-CPLCMREVNMLKERNKQYGTIKFVDISSDE 121 (206)
Q Consensus 82 ~~l~VlYDG~-CplC~~~v~~L~r~d~~~~~I~fvdi~s~~ 121 (206)
.-++.||=++ ||.|..++.-|.+.-.....+.++.++.+.
T Consensus 28 ~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~~~vi~Is~d~ 68 (143)
T cd03014 28 VKVISVFPSIDTPVCATQTKRFNKEAAKLDNTVVLTISADL 68 (143)
T ss_pred eEEEEEEcCCCCCcCHHHHHHHHHHHHhcCCCEEEEEECCC
Confidence 4567778888 799999999887764334567888777654
No 127
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=62.05 E-value=15 Score=27.92 Aligned_cols=35 Identities=14% Similarity=0.230 Sum_probs=28.9
Q ss_pred eEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChh
Q 028608 84 IKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDE 121 (206)
Q Consensus 84 l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~ 121 (206)
++||+=..|.-|++..+||...+ -.+.++++..+.
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~---i~~~~~di~~~~ 35 (112)
T cd03034 1 ITIYHNPRCSKSRNALALLEEAG---IEPEIVEYLKTP 35 (112)
T ss_pred CEEEECCCCHHHHHHHHHHHHCC---CCeEEEecccCC
Confidence 47899999999999999998875 468888876543
No 128
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=61.91 E-value=51 Score=22.85 Aligned_cols=66 Identities=26% Similarity=0.462 Sum_probs=36.5
Q ss_pred eEEEEcCCChhhHHHHHHHHhhccc-CCCEEEEeCCChhhhHHHhCCCChhcccceEEEEEeCCe-EEeh-HHHHHHH
Q 028608 84 IKMLYDGDCPLCMREVNMLKERNKQ-YGTIKFVDISSDEYSIEENQGLDYKTVMGSIHAIVSDGT-VVTD-VEAFRRL 158 (206)
Q Consensus 84 l~VlYDG~CplC~~~v~~L~r~d~~-~~~I~fvdi~s~~~~~l~~~gld~e~~~~~lhvv~~dG~-v~~G-~dA~~~i 158 (206)
+.| |--.|+.|....+.+...... .-.+..+++.. ......+|+..-=. + + -||+ ++.| ....-.+
T Consensus 3 I~v-~~~~C~~C~~~~~~~~~~~~~~~i~~ei~~~~~--~~~~~~ygv~~vPa---l-v--Ing~~~~~G~~p~~~el 71 (76)
T PF13192_consen 3 IKV-FSPGCPYCPELVQLLKEAAEELGIEVEIIDIED--FEEIEKYGVMSVPA---L-V--INGKVVFVGRVPSKEEL 71 (76)
T ss_dssp EEE-ECSSCTTHHHHHHHHHHHHHHTTEEEEEEETTT--HHHHHHTT-SSSSE---E-E--ETTEEEEESS--HHHHH
T ss_pred EEE-eCCCCCCcHHHHHHHHHHHHhcCCeEEEEEccC--HHHHHHcCCCCCCE---E-E--ECCEEEEEecCCCHHHH
Confidence 456 666799999888888766331 23456777633 22335666632111 2 2 3677 5788 5554444
No 129
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=61.81 E-value=18 Score=29.74 Aligned_cols=23 Identities=17% Similarity=0.368 Sum_probs=17.6
Q ss_pred ceEEEE-cCCChhhHHHHHHHHhh
Q 028608 83 KIKMLY-DGDCPLCMREVNMLKER 105 (206)
Q Consensus 83 ~l~VlY-DG~CplC~~~v~~L~r~ 105 (206)
-++.|| =++||.|..++.-|.+.
T Consensus 34 vvl~F~p~~~cp~C~~el~~l~~~ 57 (187)
T TIGR03137 34 SVFFFYPADFTFVCPTELEDLADK 57 (187)
T ss_pred EEEEEECCCcCCcCHHHHHHHHHH
Confidence 445555 78999999999888654
No 130
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=61.00 E-value=11 Score=30.02 Aligned_cols=40 Identities=20% Similarity=0.261 Sum_probs=29.0
Q ss_pred CCceEEEEcCCChhhHHHHHHHHhhccc--CCCEEEEeCCCh
Q 028608 81 NWKIKMLYDGDCPLCMREVNMLKERNKQ--YGTIKFVDISSD 120 (206)
Q Consensus 81 ~~~l~VlYDG~CplC~~~v~~L~r~d~~--~~~I~fvdi~s~ 120 (206)
..-++.||..+||.|...+..|.++-.. ...+.++.++.+
T Consensus 26 k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d 67 (171)
T cd02969 26 KALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSN 67 (171)
T ss_pred CEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecC
Confidence 4568899999999999877777665321 246888877653
No 131
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=60.92 E-value=16 Score=27.90 Aligned_cols=35 Identities=9% Similarity=0.235 Sum_probs=29.0
Q ss_pred eEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChh
Q 028608 84 IKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDE 121 (206)
Q Consensus 84 l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~ 121 (206)
++||+-..|.-|++..+||...+ -.+.++++..+.
T Consensus 1 i~iy~~~~C~t~rkA~~~L~~~~---i~~~~~di~~~p 35 (114)
T TIGR00014 1 VTIYHNPRCSKSRNTLALLEDKG---IEPEVVKYLKNP 35 (114)
T ss_pred CEEEECCCCHHHHHHHHHHHHCC---CCeEEEeccCCC
Confidence 47899999999999999998864 468888876543
No 132
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=60.88 E-value=19 Score=30.07 Aligned_cols=49 Identities=20% Similarity=0.368 Sum_probs=32.7
Q ss_pred CceEEEEc---CCChhhHHHHHHHHhhcccCC--CEEEEeCCChhhhH-HHhCCC
Q 028608 82 WKIKMLYD---GDCPLCMREVNMLKERNKQYG--TIKFVDISSDEYSI-EENQGL 130 (206)
Q Consensus 82 ~~l~VlYD---G~CplC~~~v~~L~r~d~~~~--~I~fvdi~s~~~~~-l~~~gl 130 (206)
-.+++|++ .+||-|......+.+.....+ .+.++++..+.... ...+|+
T Consensus 21 ~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~~~l~~~~~V 75 (215)
T TIGR02187 21 VEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPEDKEEAEKYGV 75 (215)
T ss_pred eEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcccHHHHHHcCC
Confidence 34677778 799999999998877743233 35688887544333 345555
No 133
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=60.03 E-value=9.2 Score=27.16 Aligned_cols=37 Identities=14% Similarity=0.246 Sum_probs=24.5
Q ss_pred CceEEEEcCCChhhHHHHHHHHhhcc---cCCCEEEEeCC
Q 028608 82 WKIKMLYDGDCPLCMREVNMLKERNK---QYGTIKFVDIS 118 (206)
Q Consensus 82 ~~l~VlYDG~CplC~~~v~~L~r~d~---~~~~I~fvdi~ 118 (206)
.-++.||-.+|+.|......+.+... ..+.+.+..+.
T Consensus 19 ~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id 58 (104)
T cd02997 19 HVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVD 58 (104)
T ss_pred CEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEE
Confidence 45789999999999998766644421 12456665433
No 134
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=59.97 E-value=11 Score=28.78 Aligned_cols=39 Identities=18% Similarity=0.351 Sum_probs=25.9
Q ss_pred ceEEEE-cCCChhhHHHHHHHHhhccc--CCCEEEEeCCChh
Q 028608 83 KIKMLY-DGDCPLCMREVNMLKERNKQ--YGTIKFVDISSDE 121 (206)
Q Consensus 83 ~l~VlY-DG~CplC~~~v~~L~r~d~~--~~~I~fvdi~s~~ 121 (206)
-++++| -.+|+.|...+.-+.+.-.. ...++++.++.+.
T Consensus 31 ~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~ 72 (149)
T cd03018 31 VVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDS 72 (149)
T ss_pred EEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCC
Confidence 344555 67899999998877665221 2357777776654
No 135
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=59.76 E-value=15 Score=27.65 Aligned_cols=38 Identities=11% Similarity=0.246 Sum_probs=28.2
Q ss_pred CceEEEEcCCChhhHHHHHHHHhhccc--CCCEEEEeCCC
Q 028608 82 WKIKMLYDGDCPLCMREVNMLKERNKQ--YGTIKFVDISS 119 (206)
Q Consensus 82 ~~l~VlYDG~CplC~~~v~~L~r~d~~--~~~I~fvdi~s 119 (206)
.-++.||-.+|+.|.+++..|.++-.. ...+.++.++.
T Consensus 25 ~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~ 64 (126)
T cd03012 25 VVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHS 64 (126)
T ss_pred EEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEecc
Confidence 467889999999999999888666321 24578887754
No 136
>PLN02817 glutathione dehydrogenase (ascorbate)
Probab=59.60 E-value=29 Score=30.44 Aligned_cols=67 Identities=25% Similarity=0.412 Sum_probs=41.5
Q ss_pred cCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhHHHhCCCChhcccceEEEEEeCCeEEehHHHHHHHHHHc
Q 028608 89 DGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSIEENQGLDYKTVMGSIHAIVSDGTVVTDVEAFRRLYEEV 162 (206)
Q Consensus 89 DG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~~l~~~gld~e~~~~~lhvv~~dG~v~~G~dA~~~il~~l 162 (206)
-|.||+|.+..-.|..++.. -.+..+++..... ....+++. ..+-++..+|.++..+.|+..-+...
T Consensus 70 ~g~cp~s~rV~i~L~ekgi~-ye~~~vdl~~~~~---~fl~iNP~---GkVPvL~~d~~~L~ES~aI~~YL~e~ 136 (265)
T PLN02817 70 LGDCPFCQRVLLTLEEKHLP-YDMKLVDLTNKPE---WFLKISPE---GKVPVVKLDEKWVADSDVITQALEEK 136 (265)
T ss_pred CCCCcHHHHHHHHHHHcCCC-CEEEEeCcCcCCH---HHHhhCCC---CCCCEEEECCEEEecHHHHHHHHHHH
Confidence 35699999998888776542 2334455543211 12233332 44556666778899999988877664
No 137
>PHA02125 thioredoxin-like protein
Probab=58.20 E-value=28 Score=24.04 Aligned_cols=42 Identities=21% Similarity=0.306 Sum_probs=28.7
Q ss_pred eEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhH-HHhCCC
Q 028608 84 IKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSI-EENQGL 130 (206)
Q Consensus 84 l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~~-l~~~gl 130 (206)
+++||=.+|+-|......|.+.. +.++++..+.... ...+++
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~-----~~~~~vd~~~~~~l~~~~~v 44 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE-----YTYVDVDTDEGVELTAKHHI 44 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh-----heEEeeeCCCCHHHHHHcCC
Confidence 68999999999999888886542 4566666544333 234444
No 138
>cd03044 GST_N_EF1Bgamma GST_N family, Gamma subunit of Elongation Factor 1B (EFB1gamma) subfamily; EF1Bgamma is part of the eukaryotic translation elongation factor-1 (EF1) complex which plays a central role in the elongation cycle during protein biosynthesis. EF1 consists of two functionally distinct units, EF1A and EF1B. EF1A catalyzes the GTP-dependent binding of aminoacyl-tRNA to the ribosomal A site concomitant with the hydrolysis of GTP. The resulting inactive EF1A:GDP complex is recycled to the active GTP form by the guanine-nucleotide exchange factor EF1B, a complex composed of at least two subunits, alpha and gamma. Metazoan EFB1 contain a third subunit, beta. The EF1B gamma subunit contains a GST fold consisting of an N-terminal TRX-fold domain and a C-terminal alpha helical domain. The GST-like domain of EF1Bgamma is believed to mediate the dimerization of the EF1 complex, which in yeast is a dimer of the heterotrimer EF1A:EF1Balpha:EF1Bgamma. In addition to its role in prot
Probab=57.34 E-value=51 Score=22.42 Aligned_cols=71 Identities=14% Similarity=0.118 Sum_probs=39.8
Q ss_pred EEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhh-HHHhCCCChhcccceEEEEE-eCCeEEehHHHHHHHHHH
Q 028608 85 KMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYS-IEENQGLDYKTVMGSIHAIV-SDGTVVTDVEAFRRLYEE 161 (206)
Q Consensus 85 ~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~-~l~~~gld~e~~~~~lhvv~-~dG~v~~G~dA~~~il~~ 161 (206)
+++|...|+.|.+..-.+...+. .+.++.+...... ......+++. ..+-++. +||.+...+.|+.+-+..
T Consensus 2 ~Ly~~~~~~~~~~~~~~l~~~gi---~~~~~~v~~~~~~~~~~~~~~nP~---~~vP~L~~~~g~~l~es~aI~~yL~~ 74 (75)
T cd03044 2 TLYTYPGNPRSLKILAAAKYNGL---DVEIVDFQPGKENKTPEFLKKFPL---GKVPAFEGADGFCLFESNAIAYYVAN 74 (75)
T ss_pred eEecCCCCccHHHHHHHHHHcCC---ceEEEecccccccCCHHHHHhCCC---CCCCEEEcCCCCEEeeHHHHHHHHhh
Confidence 57777889989877666665543 3555544432101 0111122222 2344444 468899999998876543
No 139
>cd03042 GST_N_Zeta GST_N family, Class Zeta subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Zeta GSTs, also known as maleylacetoacetate (MAA) isomerases, catalyze the isomerization of MAA to fumarylacetoacetate, the penultimate step in tyrosine/phenylalanine catabolism, using GSH as a cofactor. They show little GSH-conjugating activity towards traditional GST substrates but display modest GSH peroxidase activity. They are also implicated in the detoxification of the carcinogen dichloroacetic acid by catalyzing its dechlorination to glyoxylic acid.
Probab=56.52 E-value=55 Score=21.58 Aligned_cols=69 Identities=16% Similarity=0.096 Sum_probs=36.3
Q ss_pred EEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhh--hHHHhCCCChhcccceEEEEEeCCeEEehHHHHHHHH
Q 028608 85 KMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEY--SIEENQGLDYKTVMGSIHAIVSDGTVVTDVEAFRRLY 159 (206)
Q Consensus 85 ~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~--~~l~~~gld~e~~~~~lhvv~~dG~v~~G~dA~~~il 159 (206)
++++...|+.|.+....+...+. .+..+.+..... .......+.+ ...+-++..+|.....+.|+++-+
T Consensus 2 ~L~~~~~~~~~~~~~~~l~~~gi---~~~~~~~~~~~~~~~~~~~~~~~p---~~~vP~l~~~~~~l~es~aI~~yL 72 (73)
T cd03042 2 ILYSYFRSSASYRVRIALNLKGL---DYEYVPVNLLKGEQLSPAYRALNP---QGLVPTLVIDGLVLTQSLAIIEYL 72 (73)
T ss_pred EEecCCCCcchHHHHHHHHHcCC---CCeEEEecCccCCcCChHHHHhCC---CCCCCEEEECCEEEEcHHHHHHHh
Confidence 56666778888877666665543 244333321110 0001111222 233445556788999999887643
No 140
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=55.24 E-value=15 Score=30.14 Aligned_cols=24 Identities=21% Similarity=0.533 Sum_probs=19.6
Q ss_pred ceEEEEcCCChhhHHHHHHHHhhc
Q 028608 83 KIKMLYDGDCPLCMREVNMLKERN 106 (206)
Q Consensus 83 ~l~VlYDG~CplC~~~v~~L~r~d 106 (206)
-++.||=.+||.|..+...+.+..
T Consensus 77 vvl~F~atwCp~C~~~lp~l~~~~ 100 (189)
T TIGR02661 77 TLLMFTAPSCPVCDKLFPIIKSIA 100 (189)
T ss_pred EEEEEECCCChhHHHHHHHHHHHH
Confidence 466789999999999988887654
No 141
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=55.23 E-value=11 Score=27.82 Aligned_cols=27 Identities=11% Similarity=0.258 Sum_probs=22.3
Q ss_pred CCceEEEEcCCChhhHHHHHHHHhhcc
Q 028608 81 NWKIKMLYDGDCPLCMREVNMLKERNK 107 (206)
Q Consensus 81 ~~~l~VlYDG~CplC~~~v~~L~r~d~ 107 (206)
..-++.||-.+|+.|...+..+.+.-.
T Consensus 21 k~~vl~F~~~~C~~C~~~~~~l~~~~~ 47 (123)
T cd03011 21 KPVLVYFWATWCPVCRFTSPTVNQLAA 47 (123)
T ss_pred CEEEEEEECCcChhhhhhChHHHHHHh
Confidence 356789999999999999988877643
No 142
>cd03076 GST_N_Pi GST_N family, Class Pi subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Pi GST is a homodimeric eukaryotic protein. The human GSTP1 is mainly found in erythrocytes, kidney, placenta and fetal liver. It is involved in stress responses and in cellular proliferation pathways as an inhibitor of JNK (c-Jun N-terminal kinase). Following oxidative stress, monomeric GSTP1 dissociates from JNK and dimerizes, losing its ability to bind JNK and causing an increase in JNK activity, thereby promoting apoptosis. GSTP1 is expressed in various tumors and is the predominant GST in a w
Probab=53.47 E-value=68 Score=21.73 Aligned_cols=69 Identities=9% Similarity=0.032 Sum_probs=40.1
Q ss_pred eEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhHHHhCCCChhcccceEEEEEeCCeEEehHHHHHHHH
Q 028608 84 IKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSIEENQGLDYKTVMGSIHAIVSDGTVVTDVEAFRRLY 159 (206)
Q Consensus 84 l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~~l~~~gld~e~~~~~lhvv~~dG~v~~G~dA~~~il 159 (206)
++++|-..|+.|.+..-.+...+. .++.+.+..+.... ....+++ ...+-++..+|.++.++.|++.-+
T Consensus 2 ~~Ly~~~~~~~~~~v~~~L~~~~i---~~e~~~v~~~~~~~-~~~~~~p---~~~vP~l~~~~~~l~es~aI~~yL 70 (73)
T cd03076 2 YTLTYFPVRGRAEAIRLLLADQGI---SWEEERVTYEEWQE-SLKPKML---FGQLPCFKDGDLTLVQSNAILRHL 70 (73)
T ss_pred cEEEEeCCcchHHHHHHHHHHcCC---CCEEEEecHHHhhh-hhhccCC---CCCCCEEEECCEEEEcHHHHHHHH
Confidence 467777779999977777766543 34444443221111 1112222 233445556888999999988754
No 143
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=53.20 E-value=25 Score=26.92 Aligned_cols=35 Identities=14% Similarity=0.271 Sum_probs=29.0
Q ss_pred eEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChh
Q 028608 84 IKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDE 121 (206)
Q Consensus 84 l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~ 121 (206)
++||.-..|+-|+...+||.+++ -.+.++++..+.
T Consensus 2 i~iy~~p~C~~crkA~~~L~~~g---i~~~~~d~~~~p 36 (113)
T cd03033 2 IIFYEKPGCANNARQKALLEAAG---HEVEVRDLLTEP 36 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC---CCcEEeehhcCC
Confidence 68999999999999999998874 468888876543
No 144
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=53.04 E-value=21 Score=26.59 Aligned_cols=66 Identities=15% Similarity=0.164 Sum_probs=36.2
Q ss_pred CCCceEEEEcCCChhhHHHHHHHHhhccc--CCCEEEEeCCChhhhH-HHhCCCChhcccceEEEEEeCCeEE
Q 028608 80 ENWKIKMLYDGDCPLCMREVNMLKERNKQ--YGTIKFVDISSDEYSI-EENQGLDYKTVMGSIHAIVSDGTVV 149 (206)
Q Consensus 80 ~~~~l~VlYDG~CplC~~~v~~L~r~d~~--~~~I~fvdi~s~~~~~-l~~~gld~e~~~~~lhvv~~dG~v~ 149 (206)
...-++.||-.+|+-|......+.+.... ...+.|..+.-+.... ....|+. ..= .+.+. .+|+..
T Consensus 24 ~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~l~~~~~V~--~~P-t~~i~-~~g~~~ 92 (111)
T cd02963 24 KKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERRLARKLGAH--SVP-AIVGI-INGQVT 92 (111)
T ss_pred CCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHHHHHHcCCc--cCC-EEEEE-ECCEEE
Confidence 34567889999999998777665444221 1246555554332222 3445652 121 24344 577754
No 145
>TIGR00862 O-ClC intracellular chloride channel protein. These proteins are thought to function in the regulation of the membrane potential and in transepithelial ion absorption and secretion in the kidney.
Probab=52.42 E-value=66 Score=27.84 Aligned_cols=66 Identities=20% Similarity=0.259 Sum_probs=41.0
Q ss_pred CCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhHHHhCCCChhcccceEEEEEeCCeEEehHHHHHHHHHHc
Q 028608 90 GDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSIEENQGLDYKTVMGSIHAIVSDGTVVTDVEAFRRLYEEV 162 (206)
Q Consensus 90 G~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~~l~~~gld~e~~~~~lhvv~~dG~v~~G~dA~~~il~~l 162 (206)
|.||+|.+..-.+..+.. .++++.+.-....+ ....+++. +.+-++..+|.++..+.|+..-+...
T Consensus 17 ~~cp~~~rv~i~L~ekgi---~~e~~~vd~~~~~~-~fl~inP~---g~vPvL~~~g~~l~ES~aI~eYL~e~ 82 (236)
T TIGR00862 17 GNCPFSQRLFMILWLKGV---VFNVTTVDLKRKPE-DLQNLAPG---THPPFLTYNTEVKTDVNKIEEFLEET 82 (236)
T ss_pred CCCHhHHHHHHHHHHcCC---CcEEEEECCCCCCH-HHHHHCcC---CCCCEEEECCEEeecHHHHHHHHHHH
Confidence 789999999888877543 34444433211111 12223332 33455556889999999999988764
No 146
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=52.28 E-value=14 Score=26.82 Aligned_cols=24 Identities=17% Similarity=0.196 Sum_probs=19.1
Q ss_pred CceEEEEcCCChhhHHHHHHHHhh
Q 028608 82 WKIKMLYDGDCPLCMREVNMLKER 105 (206)
Q Consensus 82 ~~l~VlYDG~CplC~~~v~~L~r~ 105 (206)
.-++.||-.+|+.|+.....+.+.
T Consensus 17 ~vlv~f~a~wC~~C~~~~p~l~~l 40 (104)
T cd03000 17 IWLVDFYAPWCGHCKKLEPVWNEV 40 (104)
T ss_pred eEEEEEECCCCHHHHhhChHHHHH
Confidence 457889999999999888766554
No 147
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=51.83 E-value=18 Score=30.21 Aligned_cols=61 Identities=26% Similarity=0.396 Sum_probs=41.5
Q ss_pred ceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhHHHhCCCChhcccceEEEEEeCCeEE
Q 028608 83 KIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSIEENQGLDYKTVMGSIHAIVSDGTVV 149 (206)
Q Consensus 83 ~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~~l~~~gld~e~~~~~lhvv~~dG~v~ 149 (206)
=++-||-.+|+-|......|.++......+.|+.+..+... ..+++. .+ =.+ ++..+|+..
T Consensus 105 VVV~Fya~wc~~C~~m~~~l~~LA~k~~~vkFvkI~ad~~~--~~~~i~--~l-PTl-liyk~G~~v 165 (192)
T cd02988 105 VVVHLYKDGIPLCRLLNQHLSELARKFPDTKFVKIISTQCI--PNYPDK--NL-PTI-LVYRNGDIV 165 (192)
T ss_pred EEEEEECCCCchHHHHHHHHHHHHHHCCCCEEEEEEhHHhH--hhCCCC--CC-CEE-EEEECCEEE
Confidence 35569999999999998888887654667999988876532 234432 22 234 445788754
No 148
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=51.16 E-value=16 Score=27.46 Aligned_cols=22 Identities=14% Similarity=0.301 Sum_probs=17.9
Q ss_pred CCceEEEEcCCChhhHHHHHHH
Q 028608 81 NWKIKMLYDGDCPLCMREVNML 102 (206)
Q Consensus 81 ~~~l~VlYDG~CplC~~~v~~L 102 (206)
..-++.||-.+|+.|......+
T Consensus 15 k~vlv~f~a~wC~~C~~~~~~~ 36 (125)
T cd02951 15 KPLLLLFSQPGCPYCDKLKRDY 36 (125)
T ss_pred CcEEEEEeCCCCHHHHHHHHHh
Confidence 3567899999999999887644
No 149
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=49.89 E-value=24 Score=25.80 Aligned_cols=63 Identities=10% Similarity=0.042 Sum_probs=37.3
Q ss_pred CceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhh---hH-HHhCCCChhcccceEEEEEeCCeE
Q 028608 82 WKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEY---SI-EENQGLDYKTVMGSIHAIVSDGTV 148 (206)
Q Consensus 82 ~~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~---~~-l~~~gld~e~~~~~lhvv~~dG~v 148 (206)
.-++-||=.+|+-|......+.+.......+.|+.+..+.. .. ...+++.. .=+ + ++..+|++
T Consensus 17 ~vvv~F~a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~~~~~~~l~~~~~V~~--~Pt-~-~~~~~G~~ 83 (103)
T cd02985 17 LVVLEFALKHSGPSVKIYPTMVKLSRTCNDVVFLLVNGDENDSTMELCRREKIIE--VPH-F-LFYKDGEK 83 (103)
T ss_pred EEEEEEECCCCHhHHHHhHHHHHHHHHCCCCEEEEEECCCChHHHHHHHHcCCCc--CCE-E-EEEeCCeE
Confidence 34677788899999999888876643335567766654322 11 23455521 212 3 34478874
No 150
>PLN02412 probable glutathione peroxidase
Probab=49.72 E-value=23 Score=28.48 Aligned_cols=37 Identities=8% Similarity=0.082 Sum_probs=25.8
Q ss_pred ceEEEEcCCChhhHHHHHHHHhhcc--cCCCEEEEeCCC
Q 028608 83 KIKMLYDGDCPLCMREVNMLKERNK--QYGTIKFVDISS 119 (206)
Q Consensus 83 ~l~VlYDG~CplC~~~v~~L~r~d~--~~~~I~fvdi~s 119 (206)
-++.|+..+||.|..++..|.++.. ....+.++-++.
T Consensus 32 vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~ 70 (167)
T PLN02412 32 LLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPC 70 (167)
T ss_pred EEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEecc
Confidence 3455779999999998877766522 123488887764
No 151
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=49.01 E-value=17 Score=28.93 Aligned_cols=36 Identities=17% Similarity=0.210 Sum_probs=27.0
Q ss_pred eEEEEcCCChhhHHHHHHHHhhcc-cCCCEEEEeCCC
Q 028608 84 IKMLYDGDCPLCMREVNMLKERNK-QYGTIKFVDISS 119 (206)
Q Consensus 84 l~VlYDG~CplC~~~v~~L~r~d~-~~~~I~fvdi~s 119 (206)
+.++||-.||+|--....|.+... ..-.|.|.++.-
T Consensus 1 i~~~~D~~cP~cy~~~~~l~~~~~~~~~~i~~~p~~l 37 (192)
T cd03022 1 IDFYFDFSSPYSYLAHERLPALAARHGATVRYRPILL 37 (192)
T ss_pred CeEEEeCCChHHHHHHHHHHHHHHHhCCeeEEeeeeH
Confidence 368999999999999888877632 124578877744
No 152
>PHA02540 61 DNA primase; Provisional
Probab=48.76 E-value=31 Score=31.74 Aligned_cols=74 Identities=12% Similarity=0.024 Sum_probs=47.4
Q ss_pred CCceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCC---ChhhhH-HHhCCCChhcccceEEEEEeCCeEEehHHHHH
Q 028608 81 NWKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDIS---SDEYSI-EENQGLDYKTVMGSIHAIVSDGTVVTDVEAFR 156 (206)
Q Consensus 81 ~~~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~---s~~~~~-l~~~gld~e~~~~~lhvv~~dG~v~~G~dA~~ 156 (206)
..++++.||+|-+- ...++-+..+...+-++...+.. +.+... ....|.+.+++++ ++ +.+++.|.+|-+
T Consensus 256 ~~~vvl~~D~Da~~-~at~r~~~~l~~~g~~v~v~~~~~~~~kDpde~i~~~G~~~~~~~~---~i--~~n~~~gl~ak~ 329 (337)
T PHA02540 256 KDTRVWVLDNEPRH-PDTIKRISKLIDAGEKVVIWDKCPWPSKDINDMIMKGGATPEDIME---YI--KSNTYQGLMAKL 329 (337)
T ss_pred cceEEEEECCchhH-HHHHHHHHHHHHCCCeEEEecCCCCCCcCHHHHHHhcCCCHHHHHH---HH--HHccccHHHHHH
Confidence 35789999999664 55666665553324456555544 233333 5577888888875 22 445789999887
Q ss_pred HHHH
Q 028608 157 RLYE 160 (206)
Q Consensus 157 ~il~ 160 (206)
++-+
T Consensus 330 ~~~~ 333 (337)
T PHA02540 330 RLSK 333 (337)
T ss_pred Hhhh
Confidence 7643
No 153
>PRK10026 arsenate reductase; Provisional
Probab=48.06 E-value=37 Score=27.27 Aligned_cols=37 Identities=8% Similarity=0.188 Sum_probs=30.1
Q ss_pred CceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChh
Q 028608 82 WKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDE 121 (206)
Q Consensus 82 ~~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~ 121 (206)
.+++||.-..|.-|+...+||..++ -.+.|+++-.+.
T Consensus 2 ~~i~iY~~p~Cst~RKA~~wL~~~g---i~~~~~d~~~~p 38 (141)
T PRK10026 2 SNITIYHNPACGTSRNTLEMIRNSG---TEPTIIHYLETP 38 (141)
T ss_pred CEEEEEeCCCCHHHHHHHHHHHHCC---CCcEEEeeeCCC
Confidence 4678999999999999999999875 457888865543
No 154
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=47.92 E-value=57 Score=24.74 Aligned_cols=66 Identities=17% Similarity=0.170 Sum_probs=36.3
Q ss_pred ceEEEEcCCChhhHHHHHHHHhhcc---cCCCEEEEeCCChhhhHHHhCCCChhcccceEEEEEeCCeEE
Q 028608 83 KIKMLYDGDCPLCMREVNMLKERNK---QYGTIKFVDISSDEYSIEENQGLDYKTVMGSIHAIVSDGTVV 149 (206)
Q Consensus 83 ~l~VlYDG~CplC~~~v~~L~r~d~---~~~~I~fvdi~s~~~~~l~~~gld~e~~~~~lhvv~~dG~v~ 149 (206)
=++.||=.+|+-|......+.+... ....+..+++..+.....+.+++.-...= .+.+++++|++.
T Consensus 22 VlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~~g~~vP-t~~f~~~~Gk~~ 90 (117)
T cd02959 22 LMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKDEEFSPDGGYIP-RILFLDPSGDVH 90 (117)
T ss_pred EEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchhhhcccCCCccc-eEEEECCCCCCc
Confidence 4567889999999999887766311 12356666666543211122222110011 244667788754
No 155
>PRK09481 sspA stringent starvation protein A; Provisional
Probab=47.75 E-value=1.3e+02 Score=24.70 Aligned_cols=73 Identities=10% Similarity=0.145 Sum_probs=44.7
Q ss_pred ceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhHHHhCCCChhcccceEEEEEeCCeEEehHHHHHHHHHHc
Q 028608 83 KIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSIEENQGLDYKTVMGSIHAIVSDGTVVTDVEAFRRLYEEV 162 (206)
Q Consensus 83 ~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~~l~~~gld~e~~~~~lhvv~~dG~v~~G~dA~~~il~~l 162 (206)
.+++|+...|+.|.+..-.|...+. .++.+.+.-+... .+...+++ .+.+-++..+|.++..+.|++.-+...
T Consensus 10 ~~~Ly~~~~s~~~~rv~~~L~e~gl---~~e~~~v~~~~~~-~~~~~~nP---~g~VPvL~~~g~~l~ES~AIl~YL~~~ 82 (211)
T PRK09481 10 VMTLFSGPTDIYSHQVRIVLAEKGV---SVEIEQVEKDNLP-QDLIDLNP---YQSVPTLVDRELTLYESRIIMEYLDER 82 (211)
T ss_pred eeEEeCCCCChhHHHHHHHHHHCCC---CCEEEeCCcccCC-HHHHHhCC---CCCCCEEEECCEEeeCHHHHHHHHHHh
Confidence 4677877889999988777776543 2444444322111 11222332 244556667889999999998755543
No 156
>TIGR03759 conj_TIGR03759 integrating conjugative element protein, PFL_4693 family. Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown.
Probab=47.67 E-value=82 Score=27.04 Aligned_cols=65 Identities=17% Similarity=0.222 Sum_probs=43.0
Q ss_pred CCCceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhh--H-HHhCCCChhcccceEEEEEeC
Q 028608 80 ENWKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYS--I-EENQGLDYKTVMGSIHAIVSD 145 (206)
Q Consensus 80 ~~~~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~--~-l~~~gld~e~~~~~lhvv~~d 145 (206)
+..++.+|-+.+|+-|...+..+..-+. .-.|-+++-+.++.. . ....+||++.....-.-++-|
T Consensus 108 ~~~rlalFvkd~C~~C~~~~~~l~a~~~-~~Diylvgs~~dD~~Ir~WA~~~~Idp~~V~~~~ITLNHD 175 (200)
T TIGR03759 108 GGGRLALFVKDDCVACDARVQRLLADNA-PLDLYLVGSQGDDERIRQWANRHQIDPAKVRSRQITLNHD 175 (200)
T ss_pred CCCeEEEEeCCCChHHHHHHHHHhcCCC-ceeEEEecCCCCHHHHHHHHHHcCCCHHHeecCeeEEecC
Confidence 4567888889999999999998866443 344667763333322 2 346799999887554334433
No 157
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=47.53 E-value=38 Score=28.45 Aligned_cols=25 Identities=24% Similarity=0.557 Sum_probs=20.8
Q ss_pred CCceEEEEcCCChhhHHHHHHHHhh
Q 028608 81 NWKIKMLYDGDCPLCMREVNMLKER 105 (206)
Q Consensus 81 ~~~l~VlYDG~CplC~~~v~~L~r~ 105 (206)
...+++|+|-.||+|.....-+.+.
T Consensus 85 ~v~v~~f~d~~Cp~C~~~~~~l~~~ 109 (244)
T COG1651 85 PVTVVEFFDYTCPYCKEAFPELKKK 109 (244)
T ss_pred CceEEEEecCcCccHHHHHHHHHHH
Confidence 5678999999999998777777664
No 158
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=47.36 E-value=26 Score=24.95 Aligned_cols=36 Identities=17% Similarity=0.183 Sum_probs=25.1
Q ss_pred ceEEEEcCCChhhHHHHHHHHhhccc--CCCEEEEeCC
Q 028608 83 KIKMLYDGDCPLCMREVNMLKERNKQ--YGTIKFVDIS 118 (206)
Q Consensus 83 ~l~VlYDG~CplC~~~v~~L~r~d~~--~~~I~fvdi~ 118 (206)
-++.||=.+|+.|......+.+.... ...+.|..+.
T Consensus 19 ~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd 56 (101)
T cd02994 19 WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVD 56 (101)
T ss_pred EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEE
Confidence 58999999999999988777655321 2346655544
No 159
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=46.89 E-value=41 Score=26.05 Aligned_cols=35 Identities=20% Similarity=0.446 Sum_probs=28.2
Q ss_pred ceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCCh
Q 028608 83 KIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSD 120 (206)
Q Consensus 83 ~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~ 120 (206)
.+++|.--.|.-|+...+||..+.. .+.++++...
T Consensus 2 ~itiy~~p~C~t~rka~~~L~~~gi---~~~~~~y~~~ 36 (117)
T COG1393 2 MITIYGNPNCSTCRKALAWLEEHGI---EYTFIDYLKT 36 (117)
T ss_pred eEEEEeCCCChHHHHHHHHHHHcCC---CcEEEEeecC
Confidence 4789999999999999999998754 5666766543
No 160
>PLN02378 glutathione S-transferase DHAR1
Probab=46.76 E-value=87 Score=25.84 Aligned_cols=66 Identities=24% Similarity=0.375 Sum_probs=42.0
Q ss_pred CCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhHHHhCCCChhcccceEEEEEeCCeEEehHHHHHHHHHHc
Q 028608 90 GDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSIEENQGLDYKTVMGSIHAIVSDGTVVTDVEAFRRLYEEV 162 (206)
Q Consensus 90 G~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~~l~~~gld~e~~~~~lhvv~~dG~v~~G~dA~~~il~~l 162 (206)
|.||+|.+..-.|..... .-.+..+++..... ....+++ .+.+-++..+|.++..+.|+..-+...
T Consensus 18 ~~~p~~~rv~~~L~e~gl-~~e~~~v~~~~~~~---~~l~inP---~G~VPvL~~~~~~l~ES~aI~~YL~~~ 83 (213)
T PLN02378 18 GDCPFSQRALLTLEEKSL-TYKIHLINLSDKPQ---WFLDISP---QGKVPVLKIDDKWVTDSDVIVGILEEK 83 (213)
T ss_pred CCCcchHHHHHHHHHcCC-CCeEEEeCcccCCH---HHHHhCC---CCCCCEEEECCEEecCHHHHHHHHHHh
Confidence 559999998777776654 23455666643221 1222333 244666667888999999998877653
No 161
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=46.69 E-value=97 Score=21.75 Aligned_cols=47 Identities=23% Similarity=0.290 Sum_probs=31.6
Q ss_pred ceEEEEcCCChhhHHHHHHHHhhcc-cCCCEEEEeCCChhhhHHHhCCC
Q 028608 83 KIKMLYDGDCPLCMREVNMLKERNK-QYGTIKFVDISSDEYSIEENQGL 130 (206)
Q Consensus 83 ~l~VlYDG~CplC~~~v~~L~r~d~-~~~~I~fvdi~s~~~~~l~~~gl 130 (206)
++++|==..|+||......|.+... ..-.+..+||.++... ...+|.
T Consensus 1 ~l~l~~k~~C~LC~~a~~~L~~~~~~~~~~l~~vDI~~d~~l-~~~Y~~ 48 (81)
T PF05768_consen 1 TLTLYTKPGCHLCDEAKEILEEVAAEFPFELEEVDIDEDPEL-FEKYGY 48 (81)
T ss_dssp -EEEEE-SSSHHHHHHHHHHHHCCTTSTCEEEEEETTTTHHH-HHHSCT
T ss_pred CEEEEcCCCCChHHHHHHHHHHHHhhcCceEEEEECCCCHHH-HHHhcC
Confidence 3566777899999999999987532 1235889999976532 345654
No 162
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=46.34 E-value=50 Score=22.95 Aligned_cols=36 Identities=14% Similarity=0.218 Sum_probs=26.2
Q ss_pred EEEEcCCChhhHHHHHHHHhhcc-cCCCEEEEeCCCh
Q 028608 85 KMLYDGDCPLCMREVNMLKERNK-QYGTIKFVDISSD 120 (206)
Q Consensus 85 ~VlYDG~CplC~~~v~~L~r~d~-~~~~I~fvdi~s~ 120 (206)
+.||=.+||.|......+.+... ....+.++.+.+.
T Consensus 3 i~~~a~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~~~ 39 (76)
T TIGR00412 3 IQIYGTGCANCQMTEKNVKKAVEELGIDAEFEKVTDM 39 (76)
T ss_pred EEEECCCCcCHHHHHHHHHHHHHHcCCCeEEEEeCCH
Confidence 45677999999999777766532 1256889988843
No 163
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=45.78 E-value=31 Score=28.60 Aligned_cols=36 Identities=22% Similarity=0.288 Sum_probs=27.3
Q ss_pred ceEEEEcCCChhhHHHHHHHHhhcc-cCCCEEEEeCC
Q 028608 83 KIKMLYDGDCPLCMREVNMLKERNK-QYGTIKFVDIS 118 (206)
Q Consensus 83 ~l~VlYDG~CplC~~~v~~L~r~d~-~~~~I~fvdi~ 118 (206)
++.++||=.||+|--....|.+... ..-.|.|.++.
T Consensus 2 ~Id~~~D~vcPwcylg~~~l~~~~~~~~v~i~~~P~~ 38 (209)
T cd03021 2 KIELYYDVVSPYSYLAFEVLCRYQTAWNVDITYVPVF 38 (209)
T ss_pred ceEEEEeCCChHHHHHHHHHHHHHHHhCCeEEEEeee
Confidence 5679999999999988888876532 13467888864
No 164
>PLN02473 glutathione S-transferase
Probab=45.08 E-value=97 Score=25.15 Aligned_cols=75 Identities=17% Similarity=0.118 Sum_probs=43.2
Q ss_pred eEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhHHHhCCCChhcccceEEEEEeCCeEEehHHHHHHHHHHc
Q 028608 84 IKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSIEENQGLDYKTVMGSIHAIVSDGTVVTDVEAFRRLYEEV 162 (206)
Q Consensus 84 l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~~l~~~gld~e~~~~~lhvv~~dG~v~~G~dA~~~il~~l 162 (206)
+++|+-..|+.|.+..-.|..++.. -.+..+++...+....+...+++ ++.+-++..+|.++..+.|+..-+...
T Consensus 3 ~kLy~~~~s~~~~rv~~~L~e~gi~-ye~~~v~~~~~~~~~~~~~~~nP---~g~vP~L~~~g~~l~ES~aI~~YL~~~ 77 (214)
T PLN02473 3 VKVYGQIKAANPQRVLLCFLEKGIE-FEVIHVDLDKLEQKKPEHLLRQP---FGQVPAIEDGDLKLFESRAIARYYATK 77 (214)
T ss_pred eEEecCCCCCchHHHHHHHHHcCCC-ceEEEecCcccccCCHHHHhhCC---CCCCCeEEECCEEEEehHHHHHHHHHH
Confidence 4677777899888877777665542 22333444321111111111222 345556666889999999999866543
No 165
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=44.88 E-value=26 Score=28.28 Aligned_cols=34 Identities=21% Similarity=0.336 Sum_probs=24.0
Q ss_pred eEEEEcCCChhhHHHHHHHHhhcccC-----CCEEEEeC
Q 028608 84 IKMLYDGDCPLCMREVNMLKERNKQY-----GTIKFVDI 117 (206)
Q Consensus 84 l~VlYDG~CplC~~~v~~L~r~d~~~-----~~I~fvdi 117 (206)
+.+|||=.||+|--....|.+.-... -.|.|.++
T Consensus 1 I~~~~D~~cP~cyl~~~~l~~~~~~~~~~~~~~v~~~p~ 39 (201)
T cd03024 1 IDIWSDVVCPWCYIGKRRLEKALAELGDEVDVEIEWRPF 39 (201)
T ss_pred CeEEecCcCccHHHHHHHHHHHHHhCCCCCceEEEEeee
Confidence 36899999999998888776653212 34666665
No 166
>PRK11752 putative S-transferase; Provisional
Probab=44.51 E-value=1.9e+02 Score=24.95 Aligned_cols=103 Identities=16% Similarity=0.130 Sum_probs=51.6
Q ss_pred CCcccchhhhHhhhhcCCCCCCCCCcCCCCCCCCCCceEEEEcCCChhhHHHHHHHHhh---cccCCCEEE--EeCCChh
Q 028608 47 NHRSGYRNQIRAIQGATADPLTSKKEYDKDPSPENWKIKMLYDGDCPLCMREVNMLKER---NKQYGTIKF--VDISSDE 121 (206)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~l~VlYDG~CplC~~~v~~L~r~---d~~~~~I~f--vdi~s~~ 121 (206)
..+.+|+.+-|-.+.++.+-.+ .+..+.+++++ ..++.|.+..-.|..+ ..++-.+++ +++...+
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~Ly~-~~s~~~~rV~i~L~e~~~~~~~gl~ye~~~v~~~~~~ 86 (264)
T PRK11752 17 SNGGAFANINRPVAGATHEKTL---------PVGKHPLQLYS-LGTPNGQKVTIMLEELLALGVKGAEYDAWLIRIGEGD 86 (264)
T ss_pred CCCCcccccCCCCCCcchhccc---------CCCCCCeEEec-CCCCchHHHHHHHHHHHhccCCCCceEEEEecCcccc
Confidence 3466788777744444332222 23344556555 6799999877777663 110112333 3333211
Q ss_pred hhHHHhCCCChhcccceEEE-EEeCC---eEEehHHHHHHHHHHc
Q 028608 122 YSIEENQGLDYKTVMGSIHA-IVSDG---TVVTDVEAFRRLYEEV 162 (206)
Q Consensus 122 ~~~l~~~gld~e~~~~~lhv-v~~dG---~v~~G~dA~~~il~~l 162 (206)
....+...+++- ..+-+ ++.+| .++..+.|++.-+...
T Consensus 87 ~~~~e~~~iNP~---GkVP~Lv~~dg~~~~~L~ES~AIl~YL~~~ 128 (264)
T PRK11752 87 QFSSGFVEINPN---SKIPALLDRSGNPPIRVFESGAILLYLAEK 128 (264)
T ss_pred ccCHHHHhhCCC---CCCCEEEeCCCCCCeEEEcHHHHHHHHHHh
Confidence 111112223322 22333 33343 5899999998866553
No 167
>cd03077 GST_N_Alpha GST_N family, Class Alpha subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Alpha subfamily is composed of eukaryotic GSTs which can form homodimer and heterodimers. There are at least six types of class Alpha GST subunits in rats, four of which have human counterparts, resulting in many possible isoenzymes with different activities, tissue distribution and substrate specificities. Human GSTA1-1 and GSTA2-2 show high GSH peroxidase activity. GSTA3-3 catalyzes the isomerization of intermediates in steroid hormone biosynthesis. GSTA4-4 preferentially catalyzes the
Probab=42.73 E-value=1.1e+02 Score=21.12 Aligned_cols=72 Identities=13% Similarity=0.019 Sum_probs=38.9
Q ss_pred eEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhh-hHHHhCCCChhcccceEEEEEeCCeEEehHHHHHHHHHH
Q 028608 84 IKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEY-SIEENQGLDYKTVMGSIHAIVSDGTVVTDVEAFRRLYEE 161 (206)
Q Consensus 84 l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~-~~l~~~gld~e~~~~~lhvv~~dG~v~~G~dA~~~il~~ 161 (206)
++++|....+-|.+..-.+...+ -.++++.+..... ......+ ...+..+-++..||.++..+.|+.+-+..
T Consensus 2 ~~Ly~~~~~~~~~~v~~~l~~~g---i~~e~~~v~~~~~~~~~~~~~---~~~~g~vP~L~~~g~~l~ES~AI~~YL~~ 74 (79)
T cd03077 2 PVLHYFNGRGRMESIRWLLAAAG---VEFEEKFIESAEDLEKLKKDG---SLMFQQVPMVEIDGMKLVQTRAILNYIAG 74 (79)
T ss_pred CEEEEeCCCChHHHHHHHHHHcC---CCcEEEEeccHHHHHhhcccc---CCCCCCCCEEEECCEEEeeHHHHHHHHHH
Confidence 46777766666664444444433 3455554432211 1110000 11245566666688999999999886654
No 168
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=42.67 E-value=1e+02 Score=21.85 Aligned_cols=67 Identities=18% Similarity=0.306 Sum_probs=36.1
Q ss_pred EEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhH----HHhCCCChhcccceEEEEEeCCeEEehHHHHHHHH
Q 028608 85 KMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSI----EENQGLDYKTVMGSIHAIVSDGTVVTDVEAFRRLY 159 (206)
Q Consensus 85 ~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~~----l~~~gld~e~~~~~lhvv~~dG~v~~G~dA~~~il 159 (206)
+||==..||+|.+.-+.|.+++. .++.+++....... .... - -...+-++--+|+...|.+-+.++.
T Consensus 4 ~iyt~~~CPyC~~ak~~L~~~g~---~~~~i~~~~~~~~~~~~~~~~~-~----g~~tvP~I~i~~~~igg~~d~~~~~ 74 (80)
T COG0695 4 TIYTKPGCPYCKRAKRLLDRKGV---DYEEIDVDDDEPEEAREMVKRG-K----GQRTVPQIFIGGKHVGGCDDLDALE 74 (80)
T ss_pred EEEECCCCchHHHHHHHHHHcCC---CcEEEEecCCcHHHHHHHHHHh-C----CCCCcCEEEECCEEEeCcccHHHHH
Confidence 44444569999999999987754 35555555444211 1111 0 0122334555777666654444443
No 169
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=42.63 E-value=30 Score=26.00 Aligned_cols=37 Identities=11% Similarity=0.144 Sum_probs=25.7
Q ss_pred CceEEEEcCCChhhHHHHHHHHhhcc----cCCCEEEEeCC
Q 028608 82 WKIKMLYDGDCPLCMREVNMLKERNK----QYGTIKFVDIS 118 (206)
Q Consensus 82 ~~l~VlYDG~CplC~~~v~~L~r~d~----~~~~I~fvdi~ 118 (206)
.-++.||-.+|+.|.....-+.+... ..+.+.|..+.
T Consensus 21 ~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd 61 (114)
T cd02992 21 AWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVD 61 (114)
T ss_pred eEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEe
Confidence 45678899999999988877655422 12357776654
No 170
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=42.36 E-value=59 Score=25.14 Aligned_cols=63 Identities=11% Similarity=0.026 Sum_probs=35.9
Q ss_pred ceEEEEcCCChhhHHHHHHHHhhccc-CCCEEEEeCCChhhhH-HHhCCCChhcccceEEEEEeCCeEE
Q 028608 83 KIKMLYDGDCPLCMREVNMLKERNKQ-YGTIKFVDISSDEYSI-EENQGLDYKTVMGSIHAIVSDGTVV 149 (206)
Q Consensus 83 ~l~VlYDG~CplC~~~v~~L~r~d~~-~~~I~fvdi~s~~~~~-l~~~gld~e~~~~~lhvv~~dG~v~ 149 (206)
-++.||-.+||-|+...-.+.+.... .+.+.|..+.-+.... ...+|+.- += .+ ++-.+|+..
T Consensus 17 vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~~la~~~~V~~--iP-Tf-~~fk~G~~v 81 (114)
T cd02954 17 VVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVPDFNKMYELYD--PP-TV-MFFFRNKHM 81 (114)
T ss_pred EEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCCHHHHHHcCCCC--CC-EE-EEEECCEEE
Confidence 45669999999999888888666432 2345555444433333 34566532 21 23 333577643
No 171
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=41.87 E-value=25 Score=29.24 Aligned_cols=19 Identities=16% Similarity=0.356 Sum_probs=16.2
Q ss_pred CCceEEEEcCCChhhHHHH
Q 028608 81 NWKIKMLYDGDCPLCMREV 99 (206)
Q Consensus 81 ~~~l~VlYDG~CplC~~~v 99 (206)
...++.|||=.||.|...-
T Consensus 38 ~~~VvEffdy~CphC~~~~ 56 (207)
T PRK10954 38 EPQVLEFFSFYCPHCYQFE 56 (207)
T ss_pred CCeEEEEeCCCCccHHHhc
Confidence 4469999999999999854
No 172
>cd03038 GST_N_etherase_LigE GST_N family, Beta etherase LigE subfamily; composed of proteins similar to Sphingomonas paucimobilis beta etherase, LigE, a GST-like protein that catalyzes the cleavage of the beta-aryl ether linkages present in low-moleculer weight lignins using GSH as the hydrogen donor. This reaction is an essential step in the degradation of lignin, a complex phenolic polymer that is the most abundant aromatic material in the biosphere. The beta etherase activity of LigE is enantioselective and it complements the activity of the other GST family beta etherase, LigF.
Probab=41.61 E-value=1.2e+02 Score=21.00 Aligned_cols=67 Identities=18% Similarity=0.126 Sum_probs=37.7
Q ss_pred cCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhH-HHhCCCChhcccceEEEEEeC-CeEEehHHHHHHHHHH
Q 028608 89 DGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSI-EENQGLDYKTVMGSIHAIVSD-GTVVTDVEAFRRLYEE 161 (206)
Q Consensus 89 DG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~~-l~~~gld~e~~~~~lhvv~~d-G~v~~G~dA~~~il~~ 161 (206)
.+.|++|.+..-.|...+. .++.+.+....... .....+++ ...+-++..+ |.+..++.|+++-+..
T Consensus 13 ~~~Sp~~~kv~~~L~~~~i---~~~~~~~~~~~~~~~~~~~~~~p---~~~vP~L~~~~~~~l~eS~aI~~yL~~ 81 (84)
T cd03038 13 RAFSPNVWKTRLALNHKGL---EYKTVPVEFPDIPPILGELTSGG---FYTVPVIVDGSGEVIGDSFAIAEYLEE 81 (84)
T ss_pred CCcCChhHHHHHHHHhCCC---CCeEEEecCCCcccccccccCCC---CceeCeEEECCCCEEeCHHHHHHHHHH
Confidence 4679999998888877653 23333332221111 01112222 2344444445 8899999999886654
No 173
>COG0625 Gst Glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]
Probab=41.57 E-value=1e+02 Score=25.14 Aligned_cols=74 Identities=23% Similarity=0.280 Sum_probs=46.2
Q ss_pred eEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhHHHhCCCChhcccceEEEE-EeCCeEEehHHHHHHHHHHc
Q 028608 84 IKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSIEENQGLDYKTVMGSIHAI-VSDGTVVTDVEAFRRLYEEV 162 (206)
Q Consensus 84 l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~~l~~~gld~e~~~~~lhvv-~~dG~v~~G~dA~~~il~~l 162 (206)
++++|...+|+|.+..-.+..++. .-++..+++.. .........+++ ++.+-++ ++||.++..+.||..-+...
T Consensus 1 ~~L~~~~~sp~~~kv~l~l~e~g~-~ye~~~v~~~~-~~~~~~~~~~nP---~gkVPvL~~~~~~~l~ES~AI~~YL~~~ 75 (211)
T COG0625 1 MKLYGSPTSPYSRKVRLALEEKGL-PYEIVLVDLDA-EQKPPDFLALNP---LGKVPALVDDDGEVLTESGAILEYLAER 75 (211)
T ss_pred CeeecCCCCcchHHHHHHHHHcCC-CceEEEeCccc-ccCCHHHHhcCC---CCCCCEEeeCCCCeeecHHHHHHHHHhh
Confidence 367888888999999888887753 23455555553 111112223333 2334444 44555899999999988776
No 174
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=41.09 E-value=32 Score=25.86 Aligned_cols=24 Identities=21% Similarity=0.079 Sum_probs=19.6
Q ss_pred CceEEEEcCCChhhHHHHHHHHhh
Q 028608 82 WKIKMLYDGDCPLCMREVNMLKER 105 (206)
Q Consensus 82 ~~l~VlYDG~CplC~~~v~~L~r~ 105 (206)
.-++.||-.+|+-|..++..+.+.
T Consensus 20 ~vll~Fwa~wC~~C~~~~p~l~~~ 43 (131)
T cd03009 20 TVGLYFSASWCPPCRAFTPKLVEF 43 (131)
T ss_pred EEEEEEECCCChHHHHHhHHHHHH
Confidence 457888899999999998887644
No 175
>PRK10853 putative reductase; Provisional
Probab=40.71 E-value=46 Score=25.64 Aligned_cols=35 Identities=14% Similarity=0.217 Sum_probs=28.9
Q ss_pred eEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChh
Q 028608 84 IKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDE 121 (206)
Q Consensus 84 l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~ 121 (206)
++||.-..|.-|+...+||..++ -.+.|+|+-.+.
T Consensus 2 i~iy~~~~C~t~rkA~~~L~~~~---i~~~~~d~~k~p 36 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLEAQG---IDYRFHDYRVDG 36 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHHHcC---CCcEEeehccCC
Confidence 67899999999999999998874 468888876543
No 176
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=40.60 E-value=42 Score=26.89 Aligned_cols=40 Identities=15% Similarity=0.244 Sum_probs=29.5
Q ss_pred CceEEEEcCC-ChhhHHHHHHHHhhcccCCCEEEEeCCChh
Q 028608 82 WKIKMLYDGD-CPLCMREVNMLKERNKQYGTIKFVDISSDE 121 (206)
Q Consensus 82 ~~l~VlYDG~-CplC~~~v~~L~r~d~~~~~I~fvdi~s~~ 121 (206)
.-++.||=++ ||.|..++.-+.+.-.....+.++.++.+.
T Consensus 46 ~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~~~~vv~vs~D~ 86 (167)
T PRK00522 46 RKVLNIFPSIDTGVCATSVRKFNQEAAELDNTVVLCISADL 86 (167)
T ss_pred EEEEEEEcCCCCCccHHHHHHHHHHHHHcCCcEEEEEeCCC
Confidence 4578888888 999999998887764323467777776554
No 177
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=40.59 E-value=1.1e+02 Score=24.72 Aligned_cols=48 Identities=15% Similarity=0.259 Sum_probs=31.5
Q ss_pred eEEEEcCCChhhHHHHHHHHhhccc--CCCEEEEeCCChhhhH-HHhCCCC
Q 028608 84 IKMLYDGDCPLCMREVNMLKERNKQ--YGTIKFVDISSDEYSI-EENQGLD 131 (206)
Q Consensus 84 l~VlYDG~CplC~~~v~~L~r~d~~--~~~I~fvdi~s~~~~~-l~~~gld 131 (206)
++.||=.+|+-|......+.+.... ...+.|..+.-+.... .+.+++.
T Consensus 51 vV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~la~~~~V~ 101 (152)
T cd02962 51 LVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNVAEKFRVS 101 (152)
T ss_pred EEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHHHHHHcCce
Confidence 7888999999999998888766421 2347776665443333 3456663
No 178
>COG2999 GrxB Glutaredoxin 2 [Posttranslational modification, protein turnover, chaperones]
Probab=40.31 E-value=19 Score=30.73 Aligned_cols=16 Identities=38% Similarity=1.053 Sum_probs=11.3
Q ss_pred EEEEcCCChhhHHHHHH
Q 028608 85 KMLYDGDCPLCMREVNM 101 (206)
Q Consensus 85 ~VlYDG~CplC~~~v~~ 101 (206)
.-+|| +||||.+..--
T Consensus 3 LYIYd-HCPfcvrarmi 18 (215)
T COG2999 3 LYIYD-HCPFCVRARMI 18 (215)
T ss_pred eeEec-cChHHHHHHHH
Confidence 34666 79999986443
No 179
>cd03058 GST_N_Tau GST_N family, Class Tau subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The plant-specific class Tau GST subfamily has undergone extensive gene duplication. The Arabidopsis and Oryza genomes contain 28 and 40 Tau GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Phi GSTs, showing class specificity in substrate preference. Tau enzymes are highly efficient in detoxifying diphenylether and aryloxyphenoxypropionate herbicides. In addition, Tau GSTs play important roles in intracellular signalling, biosynthesis of anthocyanin,
Probab=39.62 E-value=1.2e+02 Score=20.36 Aligned_cols=70 Identities=13% Similarity=0.107 Sum_probs=39.5
Q ss_pred EEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhHHHhCCCChhcccceEEEEEeCCeEEehHHHHHHHHH
Q 028608 85 KMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSIEENQGLDYKTVMGSIHAIVSDGTVVTDVEAFRRLYE 160 (206)
Q Consensus 85 ~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~~l~~~gld~e~~~~~lhvv~~dG~v~~G~dA~~~il~ 160 (206)
+++.-..||.|.+..-.+...+. .++.+.+....... ....+.+. .+.+-++..+|.++..+.|+++-+.
T Consensus 2 ~Ly~~~~sp~~~~v~~~l~~~gl---~~~~~~~~~~~~~~-~~~~~~p~--~~~vP~l~~~~~~l~eS~aI~~yL~ 71 (74)
T cd03058 2 KLLGAWASPFVLRVRIALALKGV---PYEYVEEDLGNKSE-LLLASNPV--HKKIPVLLHNGKPICESLIIVEYID 71 (74)
T ss_pred EEEECCCCchHHHHHHHHHHcCC---CCEEEEeCcccCCH-HHHHhCCC--CCCCCEEEECCEEeehHHHHHHHHH
Confidence 45666789999988877776643 24443332211111 11112211 1334455557889999999987654
No 180
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=37.98 E-value=64 Score=25.25 Aligned_cols=36 Identities=19% Similarity=0.258 Sum_probs=29.3
Q ss_pred ceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChh
Q 028608 83 KIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDE 121 (206)
Q Consensus 83 ~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~ 121 (206)
.++||.--.|.-|++..+||..++ -.+.|+|+-.+.
T Consensus 2 ~i~iY~~p~Cst~RKA~~~L~~~g---i~~~~~d~~~~p 37 (126)
T TIGR01616 2 TIIFYEKPGCANNARQKAALKASG---HDVEVQDILKEP 37 (126)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHCC---CCcEEEeccCCC
Confidence 367899999999999999998875 468888876543
No 181
>PF04423 Rad50_zn_hook: Rad50 zinc hook motif; InterPro: IPR007517 The Mre11 complex (Mre11 Rad50 Nbs1) is central to chromosomal maintenance and functions in homologous recombination, telomere maintenance and sister chromatid association. The Rad50 coiled-coil region contains a dimer interface at the apex of the coiled coils in which pairs of conserved Cys-X-X-Cys motifs form interlocking hooks that bind one Zn ion. This alignment includes the zinc hook motif and a short stretch of coiled-coil on either side.; GO: 0004518 nuclease activity, 0005524 ATP binding, 0008270 zinc ion binding, 0006281 DNA repair; PDB: 1L8D_B.
Probab=37.30 E-value=8.4 Score=25.53 Aligned_cols=11 Identities=55% Similarity=1.241 Sum_probs=5.7
Q ss_pred cCCChhhHHHH
Q 028608 89 DGDCPLCMREV 99 (206)
Q Consensus 89 DG~CplC~~~v 99 (206)
+|.||+|.+..
T Consensus 20 ~~~CPlC~r~l 30 (54)
T PF04423_consen 20 KGCCPLCGRPL 30 (54)
T ss_dssp SEE-TTT--EE
T ss_pred CCcCCCCCCCC
Confidence 46899998643
No 182
>cd03048 GST_N_Ure2p_like GST_N family, Ure2p-like subfamily; composed of the Saccharomyces cerevisiae Ure2p and related GSTs. Ure2p is a regulator for nitrogen catabolism in yeast. It represses the expression of several gene products involved in the use of poor nitrogen sources when rich sources are available. A transmissible conformational change of Ure2p results in a prion called [Ure3], an inactive, self-propagating and infectious amyloid. Ure2p displays a GST fold containing an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The N-terminal TRX-fold domain is sufficient to induce the [Ure3] phenotype and is also called the prion domain of Ure2p. In addition to its role in nitrogen regulation, Ure2p confers protection to cells against heavy metal ion and oxidant toxicity, and shows glutathione (GSH) peroxidase activity. Characterized GSTs in this subfamily include Aspergillus fumigatus GSTs 1 and 2, and
Probab=36.90 E-value=1.4e+02 Score=20.39 Aligned_cols=71 Identities=30% Similarity=0.237 Sum_probs=36.3
Q ss_pred EEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhHHHhCCCChhcccceEEEEEeC---CeEEehHHHHHHHHHH
Q 028608 87 LYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSIEENQGLDYKTVMGSIHAIVSD---GTVVTDVEAFRRLYEE 161 (206)
Q Consensus 87 lYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~~l~~~gld~e~~~~~lhvv~~d---G~v~~G~dA~~~il~~ 161 (206)
+|-..+|.|.+..-.+...+.. -.+..+++............+.+ ...+-++..+ |..+..+.|++.-+..
T Consensus 4 Ly~~~~~~~~~v~~~l~~~gl~-~~~~~~~~~~~~~~~~~~~~~~p---~~~vP~l~~~~~~g~~l~eS~aI~~yL~~ 77 (81)
T cd03048 4 LYTHGTPNGFKVSIMLEELGLP-YEIHPVDISKGEQKKPEFLKINP---NGRIPAIVDHNGTPLTVFESGAILLYLAE 77 (81)
T ss_pred EEeCCCCChHHHHHHHHHcCCC-cEEEEecCcCCcccCHHHHHhCc---CCCCCEEEeCCCCceEEEcHHHHHHHHHH
Confidence 4444569999887777776542 23333443221110011111222 1233344333 8889999998876543
No 183
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=34.99 E-value=88 Score=25.94 Aligned_cols=19 Identities=16% Similarity=0.275 Sum_probs=14.8
Q ss_pred EEcCCChhhHHHHHHHHhh
Q 028608 87 LYDGDCPLCMREVNMLKER 105 (206)
Q Consensus 87 lYDG~CplC~~~v~~L~r~ 105 (206)
+.-.+||.|..++.-+.++
T Consensus 33 ~pa~~cp~C~~el~~l~~~ 51 (203)
T cd03016 33 HPADFTPVCTTELGAFAKL 51 (203)
T ss_pred ecCCCCCcCHHHHHHHHHH
Confidence 3456699999998877665
No 184
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=34.77 E-value=1.1e+02 Score=26.40 Aligned_cols=64 Identities=11% Similarity=0.148 Sum_probs=37.2
Q ss_pred CceEEEEcCCChhhHHHHHHHHhhcc-cCCCEEEEeCCChhhhH-HHhCCCChhcccceEEEEEeCCeEE
Q 028608 82 WKIKMLYDGDCPLCMREVNMLKERNK-QYGTIKFVDISSDEYSI-EENQGLDYKTVMGSIHAIVSDGTVV 149 (206)
Q Consensus 82 ~~l~VlYDG~CplC~~~v~~L~r~d~-~~~~I~fvdi~s~~~~~-l~~~gld~e~~~~~lhvv~~dG~v~ 149 (206)
.-++.||=.+|+-|......+.+.-. -.+.+.+..+..+.... .+.+++. ..=+ +.++ .+|+.+
T Consensus 54 ~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~~l~~~~~I~--~~PT-l~~f-~~G~~v 119 (224)
T PTZ00443 54 PWFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRALNLAKRFAIK--GYPT-LLLF-DKGKMY 119 (224)
T ss_pred CEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCcccHHHHHHcCCC--cCCE-EEEE-ECCEEE
Confidence 45789999999999998877655421 12457776555433322 3455553 2212 3233 477754
No 185
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=33.62 E-value=77 Score=24.07 Aligned_cols=41 Identities=12% Similarity=0.083 Sum_probs=28.0
Q ss_pred CCCceEEEEcCCChhhHHHHHHHHhhccc-CCCEEEEeCCCh
Q 028608 80 ENWKIKMLYDGDCPLCMREVNMLKERNKQ-YGTIKFVDISSD 120 (206)
Q Consensus 80 ~~~~l~VlYDG~CplC~~~v~~L~r~d~~-~~~I~fvdi~s~ 120 (206)
...-++.||=.+|+-|+.....+.+.... .+.+.|..+..+
T Consensus 29 ~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d 70 (113)
T cd03006 29 AEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCW 70 (113)
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECC
Confidence 33467889999999999988877766421 234666655443
No 186
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=32.70 E-value=2.4e+02 Score=22.65 Aligned_cols=61 Identities=11% Similarity=-0.015 Sum_probs=36.1
Q ss_pred ceEEEEcCCChhhHHHHHHHHhhcccCC-CE--EEEeCCChhhhHHHhCCCChhcccceEEEEEeCCe
Q 028608 83 KIKMLYDGDCPLCMREVNMLKERNKQYG-TI--KFVDISSDEYSIEENQGLDYKTVMGSIHAIVSDGT 147 (206)
Q Consensus 83 ~l~VlYDG~CplC~~~v~~L~r~d~~~~-~I--~fvdi~s~~~~~l~~~gld~e~~~~~lhvv~~dG~ 147 (206)
-++-||-.+|+-|....-.|.+...... .+ --+|+.....- ...+++. ....-+++ -.+|+
T Consensus 26 VVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~dl-a~~y~I~--~~~t~~~f-fk~g~ 89 (142)
T PLN00410 26 VVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDF-NTMYELY--DPCTVMFF-FRNKH 89 (142)
T ss_pred EEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCCHHH-HHHcCcc--CCCcEEEE-EECCe
Confidence 4577899999999999888877753222 23 34566554322 3456664 23343423 34555
No 187
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=32.28 E-value=92 Score=23.15 Aligned_cols=32 Identities=19% Similarity=0.474 Sum_probs=23.1
Q ss_pred EEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChh
Q 028608 87 LYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDE 121 (206)
Q Consensus 87 lYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~ 121 (206)
|+-..|.-|+...+||...+ -.+.|+++....
T Consensus 1 Y~~~~C~t~rka~~~L~~~g---i~~~~~d~~k~p 32 (110)
T PF03960_consen 1 YGNPNCSTCRKALKWLEENG---IEYEFIDYKKEP 32 (110)
T ss_dssp EE-TT-HHHHHHHHHHHHTT-----EEEEETTTS-
T ss_pred CcCCCCHHHHHHHHHHHHcC---CCeEeehhhhCC
Confidence 45568999999999999875 369999998743
No 188
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=31.77 E-value=74 Score=23.78 Aligned_cols=41 Identities=17% Similarity=0.274 Sum_probs=25.8
Q ss_pred CceEEEE-cCCChhhHHHHHHHHhhcc--cCCCEEEEeCCChhh
Q 028608 82 WKIKMLY-DGDCPLCMREVNMLKERNK--QYGTIKFVDISSDEY 122 (206)
Q Consensus 82 ~~l~VlY-DG~CplC~~~v~~L~r~d~--~~~~I~fvdi~s~~~ 122 (206)
.-+++|| =.+||.|...+.-+.+... ....+.++.++.+..
T Consensus 25 ~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~ 68 (140)
T cd03017 25 PVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSV 68 (140)
T ss_pred cEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCH
Confidence 3455555 5689999998877765521 123577777766543
No 189
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=31.53 E-value=36 Score=27.14 Aligned_cols=24 Identities=17% Similarity=0.317 Sum_probs=20.6
Q ss_pred ceEEEEcCCChhhHHHHHHHHhhc
Q 028608 83 KIKMLYDGDCPLCMREVNMLKERN 106 (206)
Q Consensus 83 ~l~VlYDG~CplC~~~v~~L~r~d 106 (206)
++.+|||--||.|-..-..|.+..
T Consensus 2 ~i~~~~D~~cp~c~~~~~~l~~l~ 25 (193)
T cd03025 2 ELYYFIDPLCGWCYGFEPLLEKLK 25 (193)
T ss_pred eEEEEECCCCchhhCchHHHHHHH
Confidence 578999999999998888887664
No 190
>PTZ00102 disulphide isomerase; Provisional
Probab=30.69 E-value=99 Score=28.47 Aligned_cols=78 Identities=12% Similarity=0.160 Sum_probs=41.0
Q ss_pred CceEEEEcCCChhhHHHHHHHHhhc----ccCCCEEEEeCCChhhhH-HHhCCCChhcccceEEEEEeCCe-EEeh---H
Q 028608 82 WKIKMLYDGDCPLCMREVNMLKERN----KQYGTIKFVDISSDEYSI-EENQGLDYKTVMGSIHAIVSDGT-VVTD---V 152 (206)
Q Consensus 82 ~~l~VlYDG~CplC~~~v~~L~r~d----~~~~~I~fvdi~s~~~~~-l~~~gld~e~~~~~lhvv~~dG~-v~~G---~ 152 (206)
.-++.||..+|+.|......+.+.. .....+.|..+....... .+.+++. ..= .+.+...++. .|.| .
T Consensus 51 ~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~l~~~~~i~--~~P-t~~~~~~g~~~~y~g~~~~ 127 (477)
T PTZ00102 51 IVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEMELAQEFGVR--GYP-TIKFFNKGNPVNYSGGRTA 127 (477)
T ss_pred cEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHHHHHhcCCC--ccc-EEEEEECCceEEecCCCCH
Confidence 4678999999999998776554321 112457776554332222 3455552 121 2434443332 2444 4
Q ss_pred HHHHHHHHHc
Q 028608 153 EAFRRLYEEV 162 (206)
Q Consensus 153 dA~~~il~~l 162 (206)
+.+...+..+
T Consensus 128 ~~l~~~l~~~ 137 (477)
T PTZ00102 128 DGIVSWIKKL 137 (477)
T ss_pred HHHHHHHHHh
Confidence 4555544443
No 191
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=30.53 E-value=1.7e+02 Score=22.64 Aligned_cols=17 Identities=12% Similarity=0.180 Sum_probs=13.4
Q ss_pred eEEEEcCCChhhHHHHH
Q 028608 84 IKMLYDGDCPLCMREVN 100 (206)
Q Consensus 84 l~VlYDG~CplC~~~v~ 100 (206)
++.||-.+|+-|+..-.
T Consensus 19 ll~f~a~WC~~Ck~me~ 35 (124)
T cd02955 19 FLSIGYSTCHWCHVMEH 35 (124)
T ss_pred EEEEccCCCHhHHHHHH
Confidence 45678899999997754
No 192
>PF03227 GILT: Gamma interferon inducible lysosomal thiol reductase (GILT); InterPro: IPR004911 This family includes the two characterised human gamma-interferon-inducible lysosomal thiol reductase (GILT) sequences [, ]. It also contains several other eukaryotic putative proteins with similarity to GILT []. The aligned region contains three conserved cysteine residues. In addition, the two GILT sequences possess a C-X(2)-C motif that is shared by some of the other sequences in the family. This motif is thought to be associated with disulphide bond reduction.
Probab=29.55 E-value=45 Score=25.13 Aligned_cols=19 Identities=26% Similarity=0.714 Sum_probs=16.1
Q ss_pred ceEEEEcCCChhhHHHHHH
Q 028608 83 KIKMLYDGDCPLCMREVNM 101 (206)
Q Consensus 83 ~l~VlYDG~CplC~~~v~~ 101 (206)
++.|||-.-||-|++++.-
T Consensus 2 ~v~vyyESlCPd~~~fi~~ 20 (108)
T PF03227_consen 2 NVEVYYESLCPDCRRFITN 20 (108)
T ss_pred EEEEEEEecCHhHHHHHHH
Confidence 4789999999999988653
No 193
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=29.12 E-value=1.4e+02 Score=19.98 Aligned_cols=36 Identities=11% Similarity=0.074 Sum_probs=25.0
Q ss_pred CCCCCceEEEEcCCChhhHHHHHHHHhhcccCCCEEEE
Q 028608 78 SPENWKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFV 115 (206)
Q Consensus 78 ~~~~~~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fv 115 (206)
.....+.+|+|++.|......+..|++.. ...+.+.
T Consensus 46 ~~~~~~~vv~~c~~~~~a~~~~~~l~~~G--~~~v~~l 81 (89)
T cd00158 46 ELDKDKPIVVYCRSGNRSARAAKLLRKAG--GTNVYNL 81 (89)
T ss_pred ccCCCCeEEEEeCCCchHHHHHHHHHHhC--cccEEEe
Confidence 34566779999999888887777777653 3444443
No 194
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=28.81 E-value=41 Score=23.29 Aligned_cols=16 Identities=25% Similarity=0.754 Sum_probs=12.8
Q ss_pred cCCChhhHHHHHHHHh
Q 028608 89 DGDCPLCMREVNMLKE 104 (206)
Q Consensus 89 DG~CplC~~~v~~L~r 104 (206)
-|.||+|++-++=+.+
T Consensus 43 ~g~CPiCRapi~dvIk 58 (62)
T KOG4172|consen 43 HGCCPICRAPIKDVIK 58 (62)
T ss_pred CCcCcchhhHHHHHHH
Confidence 3789999998886655
No 195
>KOG3160 consensus Gamma-interferon inducible lysosomal thiol reductase [Posttranslational modification, protein turnover, chaperones]
Probab=27.44 E-value=57 Score=28.27 Aligned_cols=22 Identities=23% Similarity=0.570 Sum_probs=18.7
Q ss_pred CCCceEEEEcCCChhhHHHHHH
Q 028608 80 ENWKIKMLYDGDCPLCMREVNM 101 (206)
Q Consensus 80 ~~~~l~VlYDG~CplC~~~v~~ 101 (206)
+.-.++|||-+-||.|+.++..
T Consensus 39 ~~v~ItlyyEaLCPdc~~Fi~~ 60 (220)
T KOG3160|consen 39 PKVNITLYYEALCPDCSKFIRN 60 (220)
T ss_pred CeeEEEEEEEecCccHHHHHHH
Confidence 3568899999999999988763
No 196
>PTZ00256 glutathione peroxidase; Provisional
Probab=27.43 E-value=68 Score=26.08 Aligned_cols=33 Identities=15% Similarity=0.175 Sum_probs=23.3
Q ss_pred EEEcCCChhhHHHHHHHHhhcc--cCCCEEEEeCC
Q 028608 86 MLYDGDCPLCMREVNMLKERNK--QYGTIKFVDIS 118 (206)
Q Consensus 86 VlYDG~CplC~~~v~~L~r~d~--~~~~I~fvdi~ 118 (206)
+.+-.+||.|..++..|.++-. ....+.++.++
T Consensus 47 ~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs 81 (183)
T PTZ00256 47 VNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFP 81 (183)
T ss_pred EEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEe
Confidence 4588999999999888775521 12347777775
No 197
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=27.40 E-value=75 Score=23.26 Aligned_cols=39 Identities=18% Similarity=0.347 Sum_probs=25.7
Q ss_pred CCceEEEEcCCChhhHHHHHHHHhhcc--cCCCEEEEeCCC
Q 028608 81 NWKIKMLYDGDCPLCMREVNMLKERNK--QYGTIKFVDISS 119 (206)
Q Consensus 81 ~~~l~VlYDG~CplC~~~v~~L~r~d~--~~~~I~fvdi~s 119 (206)
..-++.||=.+|+.|+....-+.+... ....+.+..+..
T Consensus 22 k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~ 62 (109)
T cd02993 22 QSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNA 62 (109)
T ss_pred CCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEEC
Confidence 346788999999999988877755421 122466655443
No 198
>cd03079 GST_N_Metaxin2 GST_N family, Metaxin subfamily, Metaxin 2; a metaxin 1 binding protein identified through a yeast two-hybrid system using metaxin 1 as the bait. Metaxin 2 shares sequence similarity with metaxin 1 but does not contain a C-terminal mitochondrial outer membrane signal-anchor domain. It associates with mitochondrial membranes through its interaction with metaxin 1, which is a component of the mitochondrial preprotein import complex of the outer membrane. The biological function of metaxin 2 is unknown. It is likely that it also plays a role in protein translocation into the mitochondria. However, this has not been experimentally validated. In a recent proteomics study, it has been shown that metaxin 2 is overexpressed in response to lipopolysaccharide-induced liver injury.
Probab=27.14 E-value=2.3e+02 Score=20.05 Aligned_cols=63 Identities=16% Similarity=0.155 Sum_probs=36.1
Q ss_pred ceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhHHHhCCCChhcccceEEEEEeCCeEEehHHHHHHHHH
Q 028608 83 KIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSIEENQGLDYKTVMGSIHAIVSDGTVVTDVEAFRRLYE 160 (206)
Q Consensus 83 ~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~~l~~~gld~e~~~~~lhvv~~dG~v~~G~dA~~~il~ 160 (206)
..+++.|+.|. .+...+|+..+. .++.+++.... . ..++ +.+-++..||+++.++.|++..+.
T Consensus 10 ~~~~~~~~~~~--~kv~~~L~elgl---pye~~~~~~~~------~-~~P~---GkVP~L~~dg~vI~eS~aIl~yL~ 72 (74)
T cd03079 10 EQILLPDNASC--LAVQTFLKMCNL---PFNVRCRANAE------F-MSPS---GKVPFIRVGNQIVSEFGPIVQFVE 72 (74)
T ss_pred CeeecCCCCCH--HHHHHHHHHcCC---CcEEEecCCcc------c-cCCC---CcccEEEECCEEEeCHHHHHHHHh
Confidence 34566677764 455556655543 34444432210 0 1221 456566669999999999998654
No 199
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=27.00 E-value=1.1e+02 Score=24.51 Aligned_cols=38 Identities=18% Similarity=0.158 Sum_probs=25.6
Q ss_pred ceEEEEcCCChhhHHHHHHHHhhc----c-----cCCCEEEEeCCCh
Q 028608 83 KIKMLYDGDCPLCMREVNMLKERN----K-----QYGTIKFVDISSD 120 (206)
Q Consensus 83 ~l~VlYDG~CplC~~~v~~L~r~d----~-----~~~~I~fvdi~s~ 120 (206)
-++-|+=.+||-|+.++-.|.+.- . ....+.++.++.+
T Consensus 28 vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D 74 (146)
T cd03008 28 LLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMD 74 (146)
T ss_pred EEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECC
Confidence 456677899999999998887631 0 0124777766644
No 200
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=26.39 E-value=98 Score=27.36 Aligned_cols=43 Identities=26% Similarity=0.390 Sum_probs=28.7
Q ss_pred CCCCCceEEEEcCC--ChhhHHHHHHH-HhhcccCCCEEEEeCCChh
Q 028608 78 SPENWKIKMLYDGD--CPLCMREVNML-KERNKQYGTIKFVDISSDE 121 (206)
Q Consensus 78 ~~~~~~l~VlYDG~--CplC~~~v~~L-~r~d~~~~~I~fvdi~s~~ 121 (206)
-.++.|+.|+|.|+ ||+|..+.=-| ..+.+ .+.+.+..-.|+.
T Consensus 54 ~~~~Gk~~v~~igw~gCP~~A~~sW~L~~ALsr-fGn~~l~~~~S~~ 99 (249)
T PF06053_consen 54 LAPNGKPEVIFIGWEGCPYCAAESWALYIALSR-FGNFSLEYHYSDP 99 (249)
T ss_pred cCCCCeeEEEEEecccCccchhhHHHHHHHHHh-cCCeeeEEeecCc
Confidence 34567899999995 99998664322 23344 7777777666654
No 201
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=26.00 E-value=1.1e+02 Score=21.80 Aligned_cols=62 Identities=6% Similarity=0.000 Sum_probs=33.8
Q ss_pred CceEEEEcCCChhhHHHHHHH------HhhcccCCCEEEEeCC--Chh--hhH-HHhCCCChhcccceEEEEEe-CCeE
Q 028608 82 WKIKMLYDGDCPLCMREVNML------KERNKQYGTIKFVDIS--SDE--YSI-EENQGLDYKTVMGSIHAIVS-DGTV 148 (206)
Q Consensus 82 ~~l~VlYDG~CplC~~~v~~L------~r~d~~~~~I~fvdi~--s~~--~~~-l~~~gld~e~~~~~lhvv~~-dG~v 148 (206)
.-++.||=.+|+.|......+ .+... +.+.++.+. .+. ... ...+++. .. =.+.+++. +|+.
T Consensus 13 ~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~--~~~~~~~vd~~~~~~~~~~~~~~~~i~--~~-Pti~~~~~~~g~~ 86 (104)
T cd02953 13 PVFVDFTADWCVTCKVNEKVVFSDPEVQAALK--KDVVLLRADWTKNDPEITALLKRFGVF--GP-PTYLFYGPGGEPE 86 (104)
T ss_pred eEEEEEEcchhHHHHHHHHHhcCCHHHHHHHh--CCeEEEEEecCCCCHHHHHHHHHcCCC--CC-CEEEEECCCCCCC
Confidence 446788889999999887544 23222 267766444 221 111 3345553 12 12446665 6764
No 202
>KOG3029 consensus Glutathione S-transferase-related protein [General function prediction only]
Probab=23.64 E-value=2.6e+02 Score=25.70 Aligned_cols=71 Identities=13% Similarity=0.304 Sum_probs=41.5
Q ss_pred CceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhHHHhCCCChhcccceEEEEEeCCeEEehHHHHHHHHHH
Q 028608 82 WKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSIEENQGLDYKTVMGSIHAIVSDGTVVTDVEAFRRLYEE 161 (206)
Q Consensus 82 ~~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~~l~~~gld~e~~~~~lhvv~~dG~v~~G~dA~~~il~~ 161 (206)
-++++|==..||||.+...||--+ .|.+.-+.-+... ...|..... +.+-++..+|+....+.+++-++..
T Consensus 89 L~l~LyQyetCPFCcKVrAFLDyh-----gisY~VVEVnpV~---r~eIk~Ssy-kKVPil~~~Geqm~dSsvIIs~laT 159 (370)
T KOG3029|consen 89 LDLVLYQYETCPFCCKVRAFLDYH-----GISYAVVEVNPVL---RQEIKWSSY-KKVPILLIRGEQMVDSSVIISLLAT 159 (370)
T ss_pred ceEEEEeeccCchHHHHHHHHhhc-----CCceEEEEecchh---hhhcccccc-ccccEEEeccceechhHHHHHHHHH
Confidence 677777778999999999998433 3433322222111 122322222 2234455568778888888877644
No 203
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=23.02 E-value=2.4e+02 Score=18.96 Aligned_cols=34 Identities=12% Similarity=0.186 Sum_probs=22.7
Q ss_pred CCCceEEEEcCCChhhHHHHHHHHhhcccCCCEEEE
Q 028608 80 ENWKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFV 115 (206)
Q Consensus 80 ~~~~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fv 115 (206)
...+.+|+||+.+.-+...+..|++.. ...+.+.
T Consensus 54 ~~~~~iv~~c~~g~~a~~~~~~l~~~G--~~~v~~l 87 (100)
T smart00450 54 DKDKPVVVYCRSGNRSAKAAWLLRELG--FKNVYLL 87 (100)
T ss_pred CCCCeEEEEeCCCcHHHHHHHHHHHcC--CCceEEe
Confidence 445679999988777777777776553 3445544
No 204
>PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like.
Probab=23.01 E-value=1.6e+02 Score=25.53 Aligned_cols=14 Identities=29% Similarity=0.598 Sum_probs=13.0
Q ss_pred cCCChhhHHHHHHH
Q 028608 89 DGDCPLCMREVNML 102 (206)
Q Consensus 89 DG~CplC~~~v~~L 102 (206)
|..|+-|+.++.-+
T Consensus 82 ~~~C~gCs~~~D~~ 95 (211)
T PF05988_consen 82 DEGCPGCSFWADHI 95 (211)
T ss_pred CCCCCchhhhHhhh
Confidence 89999999999877
No 205
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=22.97 E-value=1.9e+02 Score=22.50 Aligned_cols=46 Identities=9% Similarity=0.194 Sum_probs=29.0
Q ss_pred eEEEEcCCChhhHHHHHHHHhhcccCCC-E--EEEeCCChhhhHHHhCCC
Q 028608 84 IKMLYDGDCPLCMREVNMLKERNKQYGT-I--KFVDISSDEYSIEENQGL 130 (206)
Q Consensus 84 l~VlYDG~CplC~~~v~~L~r~d~~~~~-I--~fvdi~s~~~~~l~~~gl 130 (206)
++-|+-.+||-|....-.+.+....... + --+|+.+...- .+.+++
T Consensus 18 VVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~dv-a~~y~I 66 (114)
T cd02986 18 VLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKVPVY-TQYFDI 66 (114)
T ss_pred EEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccccHHH-HHhcCc
Confidence 3557899999999888888877532333 4 44455543221 345666
No 206
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=22.90 E-value=1.6e+02 Score=26.55 Aligned_cols=47 Identities=19% Similarity=0.268 Sum_probs=0.0
Q ss_pred eEEEEcCCChhhHHHHHHHH----hhcccCCCEEEEeCCChhhhH-HHhCCC
Q 028608 84 IKMLYDGDCPLCMREVNMLK----ERNKQYGTIKFVDISSDEYSI-EENQGL 130 (206)
Q Consensus 84 l~VlYDG~CplC~~~v~~L~----r~d~~~~~I~fvdi~s~~~~~-l~~~gl 130 (206)
++.||-.+|+.|......+. ........+.|..+..+.... .+.+|+
T Consensus 22 ~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i 73 (462)
T TIGR01130 22 LVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKDLAQKYGV 73 (462)
T ss_pred EEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHHHHHhCCC
No 207
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=22.63 E-value=29 Score=25.60 Aligned_cols=12 Identities=50% Similarity=1.195 Sum_probs=9.8
Q ss_pred EEEEcCCChhhH
Q 028608 85 KMLYDGDCPLCM 96 (206)
Q Consensus 85 ~VlYDG~CplC~ 96 (206)
.+=|||.||-|.
T Consensus 27 Rm~Fdg~Cp~Ck 38 (84)
T KOG1493|consen 27 RMPFDGCCPDCK 38 (84)
T ss_pred ecccCCcCCCCc
Confidence 466999999886
No 208
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=22.57 E-value=89 Score=27.13 Aligned_cols=37 Identities=8% Similarity=0.095 Sum_probs=25.5
Q ss_pred CceEEEEcCCChhhHHHHHHHHhhcc--cCCCEEEEeCC
Q 028608 82 WKIKMLYDGDCPLCMREVNMLKERNK--QYGTIKFVDIS 118 (206)
Q Consensus 82 ~~l~VlYDG~CplC~~~v~~L~r~d~--~~~~I~fvdi~ 118 (206)
.-+++++-.+|+.|..++..|.++-. +...+.++.+.
T Consensus 101 ~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~ 139 (236)
T PLN02399 101 VLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFP 139 (236)
T ss_pred eEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEe
Confidence 45788999999999998876665521 12346666655
No 209
>cd03046 GST_N_GTT1_like GST_N family, Saccharomyces cerevisiae GTT1-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT1, and the Schizosaccharomyces pombe GST-III. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT1, a homodimer, exhibits GST activity with standard substrates and associates with the endoplasmic reticulum. Its expression is induced after diauxic shift and remains high throughout the stationary phase. S. pomb
Probab=22.53 E-value=2.4e+02 Score=18.57 Aligned_cols=24 Identities=21% Similarity=0.274 Sum_probs=17.5
Q ss_pred eEEEEEeCCeEEehHHHHHHHHHH
Q 028608 138 SIHAIVSDGTVVTDVEAFRRLYEE 161 (206)
Q Consensus 138 ~lhvv~~dG~v~~G~dA~~~il~~ 161 (206)
.+-++..+|..+..+.|++.-+..
T Consensus 50 ~vP~l~~~g~~l~es~aI~~yL~~ 73 (76)
T cd03046 50 KVPVLVDGDLVLTESAAIILYLAE 73 (76)
T ss_pred CCCEEEECCEEEEcHHHHHHHHHH
Confidence 344555688999999998876543
No 210
>PTZ00062 glutaredoxin; Provisional
Probab=21.52 E-value=5e+02 Score=21.96 Aligned_cols=103 Identities=5% Similarity=0.052 Sum_probs=63.2
Q ss_pred ceEEEE-cCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhhHHHhCCCChhcccceEEEEEeCCeE---EehHHHHHHH
Q 028608 83 KIKMLY-DGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYSIEENQGLDYKTVMGSIHAIVSDGTV---VTDVEAFRRL 158 (206)
Q Consensus 83 ~l~VlY-DG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~~l~~~gld~e~~~~~lhvv~~dG~v---~~G~dA~~~i 158 (206)
..+++| -.+||=|......+..+......+.|+.+..+ +++. ..= .+ ++..||+. +.|.++-. +
T Consensus 19 ~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~~~F~~V~~d-------~~V~--~vP-tf-v~~~~g~~i~r~~G~~~~~-~ 86 (204)
T PTZ00062 19 KLVLYVKSSKEPEYEQLMDVCNALVEDFPSLEFYVVNLA-------DANN--EYG-VF-EFYQNSQLINSLEGCNTST-L 86 (204)
T ss_pred cEEEEEeCCCCcchHHHHHHHHHHHHHCCCcEEEEEccc-------cCcc--cce-EE-EEEECCEEEeeeeCCCHHH-H
Confidence 345555 88899999888888877554678999998765 2221 111 12 44568774 45655332 2
Q ss_pred HHHcCchhhhhhhcccchhhHHHHHHHHHHhhcccccCCC----CcCc
Q 028608 159 YEEVGLGWVYAITKYEPIAKIADFVYSVWAKYRLQITGKF----MHYK 202 (206)
Q Consensus 159 l~~lp~~w~~~ll~l~pv~~l~d~~Yr~VArnR~ri~Gr~----~~C~ 202 (206)
...+ ..+..-.+...+.+++=+.|..++--+|-+. +.|+
T Consensus 87 ~~~~-----~~~~~~~~~~~~~~~v~~li~~~~Vvvf~Kg~~~~p~C~ 129 (204)
T PTZ00062 87 VSFI-----RGWAQKGSSEDTVEKIERLIRNHKILLFMKGSKTFPFCR 129 (204)
T ss_pred HHHH-----HHHcCCCCHHHHHHHHHHHHhcCCEEEEEccCCCCCCCh
Confidence 2222 1111223334577888889999999888552 5675
No 211
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=21.02 E-value=2.2e+02 Score=22.17 Aligned_cols=40 Identities=20% Similarity=0.287 Sum_probs=24.9
Q ss_pred CCCCceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCC
Q 028608 79 PENWKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDIS 118 (206)
Q Consensus 79 ~~~~~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~ 118 (206)
.....++|+.=.+||=|...+-.+.+.......|.+.=+.
T Consensus 40 ~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p~i~~~~i~ 79 (129)
T PF14595_consen 40 QKPYNILVITETWCGDCARNVPVLAKIAEANPNIEVRIIL 79 (129)
T ss_dssp -S-EEEEEE--TT-HHHHHHHHHHHHHHHH-TTEEEEEE-
T ss_pred CCCcEEEEEECCCchhHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 3556899999999999999999998885433345444433
No 212
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=20.82 E-value=1.2e+02 Score=23.36 Aligned_cols=39 Identities=15% Similarity=0.296 Sum_probs=23.1
Q ss_pred eEEEE--cCCChhhHHHHHHHHhhcc--cCCCEEEEeCCChhh
Q 028608 84 IKMLY--DGDCPLCMREVNMLKERNK--QYGTIKFVDISSDEY 122 (206)
Q Consensus 84 l~VlY--DG~CplC~~~v~~L~r~d~--~~~~I~fvdi~s~~~ 122 (206)
.+|+| -.+||.|..++..+.+.-. ....++++.++.+..
T Consensus 33 ~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~~ 75 (154)
T PRK09437 33 VLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDKP 75 (154)
T ss_pred EEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCH
Confidence 34444 3479999988766654411 124577777776543
No 213
>KOG4578 consensus Uncharacterized conserved protein, contains KAZAL and TY domains [General function prediction only]
Probab=20.51 E-value=1.3e+02 Score=28.18 Aligned_cols=67 Identities=16% Similarity=0.355 Sum_probs=45.0
Q ss_pred CCCceEEEEcCCChhhHHHHHHHHhhcccCCCEEEEeCCChhhh--HHHhCCCChhcccceEEEEEeCCeEEehHH
Q 028608 80 ENWKIKMLYDGDCPLCMREVNMLKERNKQYGTIKFVDISSDEYS--IEENQGLDYKTVMGSIHAIVSDGTVVTDVE 153 (206)
Q Consensus 80 ~~~~l~VlYDG~CplC~~~v~~L~r~d~~~~~I~fvdi~s~~~~--~l~~~gld~e~~~~~lhvv~~dG~v~~G~d 153 (206)
.++++-|.|-|.|.-|..+++|-++... .+.=.|++-=.+++. +.+-+|. .. -+.++++|+-+.|..
T Consensus 65 ~dpql~~~yrG~Ck~C~~erk~a~eQa~-k~~~vFvPeC~~DG~f~qvQCh~y-----tG-CWCvtp~GrPIsg~~ 133 (421)
T KOG4578|consen 65 GDPQLSLKYRGSCKACLEERKFAREQAE-KDPGVFVPECRKDGNFAQVQCHGY-----TG-CWCVTPQGRPISGDN 133 (421)
T ss_pred CCCceeEEecCcHHHHHHHHHHHHHhhh-cCCceecccccCCCCeeeEEeccc-----cc-eEEeCCCCcccCCch
Confidence 4567899999999999999999988765 456677765444432 1111221 12 346778888777764
No 214
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=20.43 E-value=1.5e+02 Score=26.94 Aligned_cols=52 Identities=21% Similarity=0.257 Sum_probs=32.9
Q ss_pred CCCCceEEEEcCCChhhHHHHHHHHhhcc-cCCCEEEEeCCChhhhH-HHhCCC
Q 028608 79 PENWKIKMLYDGDCPLCMREVNMLKERNK-QYGTIKFVDISSDEYSI-EENQGL 130 (206)
Q Consensus 79 ~~~~~l~VlYDG~CplC~~~v~~L~r~d~-~~~~I~fvdi~s~~~~~-l~~~gl 130 (206)
....-+++||+-+|+.|...+.-+.+... -.+.+.+..+....-.. ...+++
T Consensus 46 ~~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~~~~~~vd~~~~~~~~~~y~i 99 (383)
T KOG0191|consen 46 DDSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGKVKIGAVDCDEHKDLCEKYGI 99 (383)
T ss_pred cCCceEEEEECCCCcchhhhchHHHHHHHHhcCceEEEEeCchhhHHHHHhcCC
Confidence 45567899999999999999988875521 12345555444433322 345555
Done!