Query 028609
Match_columns 206
No_of_seqs 314 out of 1643
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 14:11:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028609.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028609hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0484 DnaJ DnaJ-class molecu 99.9 1.7E-25 3.7E-30 198.1 8.0 74 70-145 2-75 (371)
2 KOG0713 Molecular chaperone (D 99.9 2.3E-24 4.9E-29 187.1 7.9 76 68-145 12-87 (336)
3 PRK14288 chaperone protein Dna 99.9 9.3E-22 2E-26 176.2 7.9 73 71-145 2-74 (369)
4 KOG0712 Molecular chaperone (D 99.8 1.5E-21 3.2E-26 171.0 7.5 72 71-147 3-74 (337)
5 PRK14296 chaperone protein Dna 99.8 3.4E-21 7.4E-26 172.7 7.5 72 71-145 3-74 (372)
6 KOG0716 Molecular chaperone (D 99.8 5.6E-21 1.2E-25 161.5 7.0 82 71-154 30-111 (279)
7 KOG0718 Molecular chaperone (D 99.8 1.8E-20 4E-25 168.0 9.4 82 68-149 5-88 (546)
8 PRK14286 chaperone protein Dna 99.8 1.2E-20 2.6E-25 169.2 7.9 72 72-145 4-75 (372)
9 PRK14279 chaperone protein Dna 99.8 1.3E-20 2.8E-25 170.1 7.8 70 71-142 8-77 (392)
10 PRK14282 chaperone protein Dna 99.8 5E-20 1.1E-24 165.0 7.8 74 71-145 3-76 (369)
11 PRK14287 chaperone protein Dna 99.8 5.5E-20 1.2E-24 164.9 7.7 72 71-145 3-74 (371)
12 PRK14285 chaperone protein Dna 99.8 5.7E-20 1.2E-24 164.5 7.6 72 72-145 3-74 (365)
13 PTZ00037 DnaJ_C chaperone prot 99.8 5E-20 1.1E-24 167.3 7.2 69 71-145 27-95 (421)
14 PRK14277 chaperone protein Dna 99.8 7.1E-20 1.5E-24 164.9 8.2 73 71-145 4-76 (386)
15 KOG0719 Molecular chaperone (D 99.8 1.1E-19 2.3E-24 150.8 8.2 73 70-142 12-84 (264)
16 PRK14294 chaperone protein Dna 99.8 8.5E-20 1.8E-24 163.4 8.2 73 71-145 3-75 (366)
17 PF00226 DnaJ: DnaJ domain; I 99.8 9.1E-20 2E-24 123.9 6.4 64 73-137 1-64 (64)
18 PRK14283 chaperone protein Dna 99.8 7.3E-20 1.6E-24 164.4 7.5 72 71-145 4-75 (378)
19 PRK14298 chaperone protein Dna 99.8 7.3E-20 1.6E-24 164.4 7.0 72 71-145 4-75 (377)
20 PRK14276 chaperone protein Dna 99.8 8E-20 1.7E-24 164.3 7.2 72 71-145 3-74 (380)
21 PRK14301 chaperone protein Dna 99.8 1E-19 2.2E-24 163.3 7.3 73 71-145 3-75 (373)
22 PRK14297 chaperone protein Dna 99.8 9.5E-20 2.1E-24 163.8 7.0 72 72-145 4-75 (380)
23 PRK14295 chaperone protein Dna 99.8 1.4E-19 2.9E-24 163.3 7.8 73 71-145 8-84 (389)
24 PRK14284 chaperone protein Dna 99.8 1.5E-19 3.2E-24 163.1 7.9 71 72-144 1-71 (391)
25 PRK14291 chaperone protein Dna 99.8 1.3E-19 2.7E-24 163.1 7.3 72 71-145 2-73 (382)
26 PRK14299 chaperone protein Dna 99.8 1.8E-19 4E-24 156.7 7.6 71 71-144 3-73 (291)
27 PRK14280 chaperone protein Dna 99.8 1.7E-19 3.8E-24 161.9 7.6 71 72-145 4-74 (376)
28 PRK14281 chaperone protein Dna 99.8 2.2E-19 4.7E-24 162.3 7.4 72 72-145 3-74 (397)
29 KOG0691 Molecular chaperone (D 99.8 6.1E-19 1.3E-23 152.8 9.5 75 71-147 4-78 (296)
30 PRK10767 chaperone protein Dna 99.8 3.4E-19 7.4E-24 159.7 7.9 73 71-145 3-75 (371)
31 PRK14278 chaperone protein Dna 99.8 3.2E-19 6.9E-24 160.3 7.0 68 72-142 3-70 (378)
32 KOG0717 Molecular chaperone (D 99.8 6.6E-19 1.4E-23 157.9 7.2 73 68-141 4-76 (508)
33 PRK14289 chaperone protein Dna 99.8 9.3E-19 2E-23 157.7 8.2 73 71-145 4-76 (386)
34 PRK14290 chaperone protein Dna 99.8 1E-18 2.2E-23 156.4 7.2 73 72-145 3-75 (365)
35 TIGR02349 DnaJ_bact chaperone 99.8 1.2E-18 2.6E-23 155.3 6.7 70 73-145 1-70 (354)
36 PRK14300 chaperone protein Dna 99.8 1.3E-18 2.8E-23 156.1 6.9 71 72-145 3-73 (372)
37 KOG0715 Molecular chaperone (D 99.8 1.6E-18 3.5E-23 150.5 7.2 68 73-143 44-111 (288)
38 PRK05014 hscB co-chaperone Hsc 99.7 1.1E-17 2.4E-22 135.2 10.1 98 72-170 1-103 (171)
39 PRK14292 chaperone protein Dna 99.7 2.5E-18 5.5E-23 154.1 7.0 69 72-143 2-70 (371)
40 PRK14293 chaperone protein Dna 99.7 3.1E-18 6.7E-23 153.7 7.3 71 72-145 3-73 (374)
41 PTZ00341 Ring-infected erythro 99.7 6.7E-18 1.5E-22 162.7 8.3 74 69-145 570-643 (1136)
42 PRK10266 curved DNA-binding pr 99.7 6.9E-18 1.5E-22 147.8 7.2 67 72-141 4-70 (306)
43 smart00271 DnaJ DnaJ molecular 99.7 1.7E-17 3.8E-22 110.9 6.7 59 72-131 1-59 (60)
44 PRK01356 hscB co-chaperone Hsc 99.7 5.2E-17 1.1E-21 130.7 9.4 97 72-169 2-102 (166)
45 PRK03578 hscB co-chaperone Hsc 99.7 9.7E-17 2.1E-21 130.2 10.6 99 71-170 5-108 (176)
46 cd06257 DnaJ DnaJ domain or J- 99.7 6.3E-17 1.4E-21 106.3 6.7 55 73-129 1-55 (55)
47 PRK00294 hscB co-chaperone Hsc 99.7 1.9E-16 4.2E-21 128.1 10.6 99 70-170 2-105 (173)
48 TIGR03835 termin_org_DnaJ term 99.7 3.6E-16 7.7E-21 148.0 10.3 71 72-145 2-72 (871)
49 COG2214 CbpA DnaJ-class molecu 99.6 3.1E-16 6.7E-21 127.6 7.3 70 70-140 4-73 (237)
50 KOG0721 Molecular chaperone (D 99.6 3.4E-16 7.3E-21 128.9 7.1 74 68-143 95-168 (230)
51 PHA03102 Small T antigen; Revi 99.6 4.3E-16 9.2E-21 123.4 4.7 68 72-145 5-74 (153)
52 PRK01773 hscB co-chaperone Hsc 99.6 1.8E-14 3.9E-19 116.6 9.4 98 72-169 2-104 (173)
53 KOG0720 Molecular chaperone (D 99.5 1.5E-14 3.3E-19 130.0 8.4 107 68-189 231-337 (490)
54 KOG0624 dsRNA-activated protei 99.5 1.6E-14 3.5E-19 126.8 5.2 73 66-138 388-461 (504)
55 KOG0714 Molecular chaperone (D 99.5 4E-14 8.6E-19 120.3 4.5 74 71-145 2-75 (306)
56 TIGR00714 hscB Fe-S protein as 99.5 4.5E-13 9.9E-18 106.9 9.8 85 84-169 3-90 (157)
57 KOG0722 Molecular chaperone (D 99.4 1.2E-13 2.7E-18 116.3 4.1 69 70-141 31-99 (329)
58 PHA02624 large T antigen; Prov 99.4 3.2E-13 6.9E-18 126.5 6.1 87 70-175 9-99 (647)
59 KOG0550 Molecular chaperone (D 99.4 2.8E-13 6.1E-18 121.0 4.5 74 65-139 366-439 (486)
60 PRK09430 djlA Dna-J like membr 99.4 8E-13 1.7E-17 113.9 5.4 60 70-129 198-262 (267)
61 PTZ00100 DnaJ chaperone protei 99.3 1.1E-12 2.4E-17 99.2 5.2 52 71-128 64-115 (116)
62 COG5407 SEC63 Preprotein trans 99.3 3.3E-12 7.2E-17 115.0 5.6 74 69-142 95-171 (610)
63 KOG1150 Predicted molecular ch 99.2 2E-11 4.3E-16 99.8 6.3 69 70-139 51-119 (250)
64 COG5269 ZUO1 Ribosome-associat 99.0 3.9E-10 8.6E-15 96.1 4.8 75 66-140 37-114 (379)
65 KOG1789 Endocytosis protein RM 98.4 5E-07 1.1E-11 88.8 5.3 54 70-128 1279-1336(2235)
66 KOG0568 Molecular chaperone (D 98.3 5.5E-07 1.2E-11 75.6 4.6 58 69-129 44-102 (342)
67 KOG0723 Molecular chaperone (D 98.1 4.4E-06 9.5E-11 62.0 4.9 51 73-129 57-107 (112)
68 KOG3192 Mitochondrial J-type c 97.8 2.7E-05 5.8E-10 61.6 4.8 73 69-141 5-82 (168)
69 COG1076 DjlA DnaJ-domain-conta 97.6 7.9E-05 1.7E-09 60.3 3.9 73 73-145 2-79 (174)
70 COG1076 DjlA DnaJ-domain-conta 96.9 0.00076 1.7E-08 54.6 3.2 56 72-127 113-173 (174)
71 KOG0431 Auxilin-like protein a 96.6 0.0028 6.2E-08 58.6 4.9 61 67-127 367-448 (453)
72 PF03656 Pam16: Pam16; InterP 94.1 0.094 2E-06 40.5 4.5 52 73-130 59-110 (127)
73 PF13446 RPT: A repeated domai 90.4 0.81 1.8E-05 30.4 5.0 26 73-98 6-31 (62)
74 KOG0724 Zuotin and related mol 86.2 0.78 1.7E-05 40.5 3.5 57 84-140 4-62 (335)
75 PF14687 DUF4460: Domain of un 79.0 4.5 9.8E-05 30.4 4.7 49 83-131 5-55 (112)
76 PF11833 DUF3353: Protein of u 76.7 3.8 8.3E-05 33.8 4.0 38 81-128 1-38 (194)
77 COG5552 Uncharacterized conser 51.4 64 0.0014 22.7 5.5 29 73-101 4-32 (88)
78 PF07709 SRR: Seven Residue Re 49.1 12 0.00026 17.5 1.1 13 116-128 2-14 (14)
79 KOG3442 Uncharacterized conser 38.0 45 0.00097 25.7 3.3 34 74-107 61-94 (132)
80 PF12434 Malate_DH: Malate deh 33.1 51 0.0011 18.5 2.2 17 86-102 10-26 (28)
81 PRK14102 nifW nitrogenase stab 32.4 1.4E+02 0.0031 22.2 5.2 57 70-126 13-74 (105)
82 PF03206 NifW: Nitrogen fixati 25.2 2.2E+02 0.0047 21.2 5.1 35 69-103 12-51 (105)
83 PF08447 PAS_3: PAS fold; Int 24.1 17 0.00036 24.6 -1.0 30 72-105 6-36 (91)
84 PRK15321 putative type III sec 20.3 2.9E+02 0.0063 20.5 4.9 38 69-106 13-55 (120)
No 1
>COG0484 DnaJ DnaJ-class molecular chaperone with C-terminal Zn finger domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=1.7e-25 Score=198.07 Aligned_cols=74 Identities=43% Similarity=0.778 Sum_probs=69.7
Q ss_pred cccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhhhccc
Q 028609 70 KELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMGLH 145 (206)
Q Consensus 70 ~~~d~Y~iLgv~~~as~~eIkkaYr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~~~~ 145 (206)
...|||+||||+++|+.+|||+|||+||++||||+|+.. ++|.++|++|++||+||+||++|+.||+++..++.
T Consensus 2 ~~~dyYeiLGV~k~As~~EIKkAYRkLA~kyHPD~n~g~--~~AeeKFKEI~eAYEVLsD~eKRa~YD~fG~~~~~ 75 (371)
T COG0484 2 AKRDYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNPGD--KEAEEKFKEINEAYEVLSDPEKRAAYDQFGHAGFK 75 (371)
T ss_pred CccchhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC--HHHHHHHHHHHHHHHHhCCHHHHHHhhccCccccc
Confidence 357999999999999999999999999999999999964 58899999999999999999999999999998876
No 2
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=2.3e-24 Score=187.12 Aligned_cols=76 Identities=43% Similarity=0.715 Sum_probs=71.8
Q ss_pred cccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhhhccc
Q 028609 68 ESKELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMGLH 145 (206)
Q Consensus 68 ~~~~~d~Y~iLgv~~~as~~eIkkaYr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~~~~ 145 (206)
....+|||+||||+++|+..|||+|||+||++||||||+++ +.|.+.|+.|+.||+||+||.+|+.||.+|++|+.
T Consensus 12 v~~~rDfYelLgV~k~Asd~eIKkAYRKLALk~HPDkNpdd--p~A~e~F~~in~AYEVLsDpekRk~YD~~GEegL~ 87 (336)
T KOG0713|consen 12 VLAGRDFYELLGVPKNASDQEIKKAYRKLALKYHPDKNPDD--PNANEKFKEINAAYEVLSDPEKRKHYDTYGEEGLK 87 (336)
T ss_pred hhcCCCHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCC--HHHHHHHHHHHHHHHHhcCHHHHHHHHhhhHhhhc
Confidence 34568999999999999999999999999999999999988 78999999999999999999999999999998876
No 3
>PRK14288 chaperone protein DnaJ; Provisional
Probab=99.85 E-value=9.3e-22 Score=176.19 Aligned_cols=73 Identities=42% Similarity=0.698 Sum_probs=66.8
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhhhccc
Q 028609 71 ELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMGLH 145 (206)
Q Consensus 71 ~~d~Y~iLgv~~~as~~eIkkaYr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~~~~ 145 (206)
..|||+||||+++|+.+|||+|||+||++||||+++.+ .+|.++|++|++||+||+||.+|+.||+++..++.
T Consensus 2 ~~dyY~vLgv~~~As~~eIkkayrkla~k~HPD~~~~~--~~a~~~f~~i~~AYevLsd~~kR~~YD~~G~~~~~ 74 (369)
T PRK14288 2 ELSYYEILEVEKHSNQETIKKSYRKLALKYHPDRNAGD--KEAEEKFKLINEAYGVLSDEKKRALYDRYGKKGLN 74 (369)
T ss_pred CCChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCc--cHHHHHHHHHHHHHHHhccHHHHHHHHHhcccccc
Confidence 36999999999999999999999999999999999754 36789999999999999999999999999876654
No 4
>KOG0712 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=1.5e-21 Score=170.99 Aligned_cols=72 Identities=42% Similarity=0.718 Sum_probs=67.2
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhhhcccch
Q 028609 71 ELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMGLHLA 147 (206)
Q Consensus 71 ~~d~Y~iLgv~~~as~~eIkkaYr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~~~~~~ 147 (206)
...||+||||+++|+.+|||+|||+|+++||||||++ +.++|++|.+||+||+||++|..||+++..|+..+
T Consensus 3 ~~~~y~il~v~~~As~~eikkayrkla~k~HpDkn~~-----~~ekfkei~~AyevLsd~ekr~~yD~~g~~~~~~g 74 (337)
T KOG0712|consen 3 NTKLYDILGVSPDASEEEIKKAYRKLALKYHPDKNPD-----AGEKFKEISQAYEVLSDPEKREIYDQYGEEGLQGG 74 (337)
T ss_pred ccccceeeccCCCcCHHHHHHHHHHHHHHhCCCCCcc-----HHHHHHHHHHHHHHhcCHHHHHHHHhhhhhhhccc
Confidence 5689999999999999999999999999999999987 56899999999999999999999999999887543
No 5
>PRK14296 chaperone protein DnaJ; Provisional
Probab=99.84 E-value=3.4e-21 Score=172.69 Aligned_cols=72 Identities=29% Similarity=0.601 Sum_probs=66.1
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhhhccc
Q 028609 71 ELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMGLH 145 (206)
Q Consensus 71 ~~d~Y~iLgv~~~as~~eIkkaYr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~~~~ 145 (206)
..|||+||||+++|+.++||+|||+||++||||++++ ..|.++|++|++||+||+||.+|+.||+++..++.
T Consensus 3 ~~dyY~~Lgv~~~a~~~eik~ayrkla~~~HPD~n~~---~~a~~~F~~i~~AyevLsD~~KR~~YD~~G~~~~~ 74 (372)
T PRK14296 3 KKDYYEVLGVSKTASEQEIRQAYRKLAKQYHPDLNKS---PDAHDKMVEINEAADVLLDKDKRKQYDQFGHAAFD 74 (372)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC---chHHHHHHHHHHHHHHhcCHHHhhhhhhccchhhc
Confidence 4699999999999999999999999999999999864 35778999999999999999999999999876653
No 6
>KOG0716 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=5.6e-21 Score=161.52 Aligned_cols=82 Identities=40% Similarity=0.676 Sum_probs=74.3
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhhhcccchhhh
Q 028609 71 ELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMGLHLAFSA 150 (206)
Q Consensus 71 ~~d~Y~iLgv~~~as~~eIkkaYr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~~~~~~~~~ 150 (206)
..|+|+||||+++|+.++|||+||+|+++||||+++++ +++.++|++||+||+||+||.+|..||.+|..|+......
T Consensus 30 ~~~LYdVLgl~k~at~d~IKKaYR~L~~k~HPD~~gd~--P~~~dkf~eIN~Ay~ILsD~~kR~~YD~~g~~~l~l~e~f 107 (279)
T KOG0716|consen 30 RLDLYDVLGLPKTATKDEIKKAYRKLALKYHPDKNGDN--PEATDKFKEINTAYAILSDPTKRNVYDEYGELGLKLAEQF 107 (279)
T ss_pred hhHHHHHhCCCcccchHHHHHHHHHHHHHhCCCcCCCC--chhHHHHHHHHHHHHHhcChhhhhhHHHhhhHHHHHHHhh
Confidence 67999999999999999999999999999999999886 5788999999999999999999999999999888766554
Q ss_pred hccc
Q 028609 151 RRRQ 154 (206)
Q Consensus 151 ~~~~ 154 (206)
+...
T Consensus 108 g~d~ 111 (279)
T KOG0716|consen 108 GEDS 111 (279)
T ss_pred cccC
Confidence 4433
No 7
>KOG0718 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=1.8e-20 Score=168.03 Aligned_cols=82 Identities=40% Similarity=0.720 Sum_probs=74.1
Q ss_pred cccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCC-CccHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhhhccc-
Q 028609 68 ESKELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSP-PDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMGLH- 145 (206)
Q Consensus 68 ~~~~~d~Y~iLgv~~~as~~eIkkaYr~l~~~~HPDk~~-~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~~~~- 145 (206)
+..+.+||.+|+|+++|+.+|||+|||++++.|||||.. ++.++.|++.|+.|..||+||+||.+|++||.+|..|+.
T Consensus 5 e~~e~e~Ya~LNlpkdAt~eeI~~AYrr~~~lfHPDkh~dpd~K~~AE~~F~~i~~AyEVLsDp~kRaIYD~~G~qGL~t 84 (546)
T KOG0718|consen 5 ELDEIELYALLNLPKDATDEEIKKAYRRLSRLFHPDKHTDPDQKKAAEEKFQRIQRAYEVLSDPQKRAIYDNYGEQGLKT 84 (546)
T ss_pred ccchhhHHHHhCCCcccCHHHHHHHHHHHHHhcCCcccCChhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhhccccc
Confidence 445679999999999999999999999999999999986 566788999999999999999999999999999999887
Q ss_pred chhh
Q 028609 146 LAFS 149 (206)
Q Consensus 146 ~~~~ 149 (206)
.++.
T Consensus 85 ~gwE 88 (546)
T KOG0718|consen 85 EGWE 88 (546)
T ss_pred cCce
Confidence 4443
No 8
>PRK14286 chaperone protein DnaJ; Provisional
Probab=99.82 E-value=1.2e-20 Score=169.24 Aligned_cols=72 Identities=42% Similarity=0.692 Sum_probs=66.7
Q ss_pred cccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhhhccc
Q 028609 72 LSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMGLH 145 (206)
Q Consensus 72 ~d~Y~iLgv~~~as~~eIkkaYr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~~~~ 145 (206)
.|||+||||+++|+.++||+|||+|+++||||+++.. .+|.++|++|++||+||+||.+|+.||+++..++.
T Consensus 4 ~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~--~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~ 75 (372)
T PRK14286 4 RSYYDILGVSKSANDEEIKSAYRKLAIKYHPDKNKGN--KESEEKFKEATEAYEILRDPKKRQAYDQFGKAGVN 75 (372)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc--hHHHHHHHHHHHHHHHhccHHHHHHHHHhCchhhc
Confidence 6999999999999999999999999999999998754 46789999999999999999999999999877654
No 9
>PRK14279 chaperone protein DnaJ; Provisional
Probab=99.82 E-value=1.3e-20 Score=170.06 Aligned_cols=70 Identities=43% Similarity=0.695 Sum_probs=65.0
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhhh
Q 028609 71 ELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSM 142 (206)
Q Consensus 71 ~~d~Y~iLgv~~~as~~eIkkaYr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~ 142 (206)
..|||+||||+++|+.++||+|||+|+++||||+++.. ++|.++|++|++||+||+||.+|+.||+++..
T Consensus 8 ~~Dyy~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~--~~a~~~f~~i~~Ay~vLsD~~KR~~YD~~G~~ 77 (392)
T PRK14279 8 EKDFYKELGVSSDASAEEIKKAYRKLARELHPDANPGD--PAAEERFKAVSEAHDVLSDPAKRKEYDETRRL 77 (392)
T ss_pred ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCC--hHHHHHHHHHHHHHHHhcchhhhhHHHHhhhh
Confidence 47999999999999999999999999999999999754 46789999999999999999999999999753
No 10
>PRK14282 chaperone protein DnaJ; Provisional
Probab=99.81 E-value=5e-20 Score=165.04 Aligned_cols=74 Identities=43% Similarity=0.785 Sum_probs=66.9
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhhhccc
Q 028609 71 ELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMGLH 145 (206)
Q Consensus 71 ~~d~Y~iLgv~~~as~~eIkkaYr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~~~~ 145 (206)
..|||+||||+++|+.+|||+|||+|+++||||+++... .+|.++|++|++||+||+||.+|+.||.++..++.
T Consensus 3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~~-~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~g~~~~~ 76 (369)
T PRK14282 3 KKDYYEILGVSRNATQEEIKRAYKRLVKEWHPDRHPENR-KEAEQKFKEIQEAYEVLSDPQKRAMYDRFGYVGEQ 76 (369)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCccch-hHHHHHHHHHHHHHHHhcChhhHHHHhhcCccccc
Confidence 469999999999999999999999999999999986542 35789999999999999999999999999876653
No 11
>PRK14287 chaperone protein DnaJ; Provisional
Probab=99.80 E-value=5.5e-20 Score=164.89 Aligned_cols=72 Identities=40% Similarity=0.722 Sum_probs=66.0
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhhhccc
Q 028609 71 ELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMGLH 145 (206)
Q Consensus 71 ~~d~Y~iLgv~~~as~~eIkkaYr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~~~~ 145 (206)
..|||+||||+++|+.++||+|||+|+++||||+++. .+|.++|++|++||+||+||.+|+.||+++..++.
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~---~~~~~~f~~i~~Ay~~L~d~~kR~~YD~~G~~~~~ 74 (371)
T PRK14287 3 KRDYYEVLGVDRNASVDEVKKAYRKLARKYHPDVNKA---PDAEDKFKEVKEAYDTLSDPQKKAHYDQFGHTDPN 74 (371)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC---hhHHHHHHHHHHHHHHhCcHhHHHHHHhhCCcccc
Confidence 3699999999999999999999999999999999864 36778999999999999999999999999877654
No 12
>PRK14285 chaperone protein DnaJ; Provisional
Probab=99.80 E-value=5.7e-20 Score=164.46 Aligned_cols=72 Identities=39% Similarity=0.605 Sum_probs=66.5
Q ss_pred cccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhhhccc
Q 028609 72 LSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMGLH 145 (206)
Q Consensus 72 ~d~Y~iLgv~~~as~~eIkkaYr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~~~~ 145 (206)
.|||+||||+++|+.++||+|||+|+++||||+++.. ++|.++|++|++||+||+||.+|..||.++..++.
T Consensus 3 ~d~y~iLgv~~~a~~~eIk~ayr~la~~~HPD~~~~~--~~a~~~f~~i~~Ay~vL~d~~kr~~yd~~g~~~~~ 74 (365)
T PRK14285 3 RDYYEILGLSKGASKDEIKKAYRKIAIKYHPDKNKGN--KEAESIFKEATEAYEVLIDDNKRAQYDRFGHTAFE 74 (365)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC--HHHHHHHHHHHHHHHHHcCcchhHHHHhcCcchhc
Confidence 6999999999999999999999999999999998754 46788999999999999999999999999877653
No 13
>PTZ00037 DnaJ_C chaperone protein; Provisional
Probab=99.80 E-value=5e-20 Score=167.32 Aligned_cols=69 Identities=36% Similarity=0.634 Sum_probs=63.5
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhhhccc
Q 028609 71 ELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMGLH 145 (206)
Q Consensus 71 ~~d~Y~iLgv~~~as~~eIkkaYr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~~~~ 145 (206)
..|||+||||+++|+.++||+|||+||++||||++++ .++|++|++||+||+||.+|+.||.++..++.
T Consensus 27 ~~d~Y~vLGV~~~As~~eIKkAYrkla~k~HPDk~~~------~e~F~~i~~AYevLsD~~kR~~YD~~G~~~~~ 95 (421)
T PTZ00037 27 NEKLYEVLNLSKDCTTSEIKKAYRKLAIKHHPDKGGD------PEKFKEISRAYEVLSDPEKRKIYDEYGEEGLE 95 (421)
T ss_pred chhHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCch------HHHHHHHHHHHHHhccHHHHHHHhhhcchhcc
Confidence 5799999999999999999999999999999999853 26899999999999999999999999876654
No 14
>PRK14277 chaperone protein DnaJ; Provisional
Probab=99.80 E-value=7.1e-20 Score=164.93 Aligned_cols=73 Identities=42% Similarity=0.768 Sum_probs=67.0
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhhhccc
Q 028609 71 ELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMGLH 145 (206)
Q Consensus 71 ~~d~Y~iLgv~~~as~~eIkkaYr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~~~~ 145 (206)
..|||+||||+++|+.++||+|||+|+++||||+++.. .+|.++|++|++||+||+||.+|+.||.++..++.
T Consensus 4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~--~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~~ 76 (386)
T PRK14277 4 KKDYYEILGVDRNATEEEIKKAYRRLAKKYHPDLNPGD--KEAEQKFKEINEAYEILSDPQKRAQYDQFGHAAFD 76 (386)
T ss_pred CCCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCc--hHHHHHHHHHHHHHHHhCCHHHHHHHHhhcccccc
Confidence 36999999999999999999999999999999999754 46788999999999999999999999999877654
No 15
>KOG0719 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=1.1e-19 Score=150.81 Aligned_cols=73 Identities=34% Similarity=0.597 Sum_probs=68.5
Q ss_pred cccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhhh
Q 028609 70 KELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSM 142 (206)
Q Consensus 70 ~~~d~Y~iLgv~~~as~~eIkkaYr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~ 142 (206)
...|+|+||||.++|+..+|++||+++++++|||+++.....+|+++|+.|+.||.||+|..+|+.||..|..
T Consensus 12 ~~~d~YevLGVer~a~~~eIrkAY~klal~~HPDk~~eed~~ea~~kFq~l~k~y~iLsDeekR~~YDetG~i 84 (264)
T KOG0719|consen 12 NKKDLYEVLGVERDATDKEIRKAYHKLALRLHPDKNHEEDKVEATEKFQQLQKAYQILSDEEKRAVYDETGSI 84 (264)
T ss_pred cccCHHHHhhhcccCCHHHHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhccCCC
Confidence 3459999999999999999999999999999999998777789999999999999999999999999998754
No 16
>PRK14294 chaperone protein DnaJ; Provisional
Probab=99.80 E-value=8.5e-20 Score=163.39 Aligned_cols=73 Identities=42% Similarity=0.735 Sum_probs=67.2
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhhhccc
Q 028609 71 ELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMGLH 145 (206)
Q Consensus 71 ~~d~Y~iLgv~~~as~~eIkkaYr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~~~~ 145 (206)
..|||+||||+++|+.++||+|||+|+++||||+++.. .+|.++|+.|++||+||+||.+|+.||+++..|+.
T Consensus 3 ~~d~y~~lgv~~~a~~~eik~ayr~la~~~HPD~~~~~--~~~~~~f~~~~~Ay~vL~d~~~r~~yD~~G~~g~~ 75 (366)
T PRK14294 3 KRDYYEILGVTRDASEEEIKKSYRKLAMKYHPDRNPGD--KEAEELFKEAAEAYEVLSDPKKRGIYDQYGHEGLS 75 (366)
T ss_pred CCChHHHhCCCCCCCHHHHHHHHHHHHHHHCCCCCCCc--hHHHHHHHHHHHHHHHhccHHHHHHHHhhcccccc
Confidence 46999999999999999999999999999999999754 46788999999999999999999999999987654
No 17
>PF00226 DnaJ: DnaJ domain; InterPro: IPR001623 The prokaryotic heat shock protein DnaJ interacts with the chaperone hsp70-like DnaK protein []. Structurally, the DnaJ protein consists of an N-terminal conserved domain (called 'J' domain) of about 70 amino acids, a glycine-rich region ('G' domain') of about 30 residues, a central domain containing four repeats of a CXXCXGXG motif ('CRR' domain) and a C-terminal region of 120 to 170 residues. Such a structure is shown in the following schematic representation: +------------+-+-------+-----+-----------+--------------------------------+ | N-terminal | | Gly-R | | CXXCXGXG | C-terminal | +------------+-+-------+-----+-----------+--------------------------------+ It is thought that the 'J' domain of DnaJ mediates the interaction with the dnaK protein and consists of four helices, the second of which has a charged surface that includes at least one pair of basic residues that are essential for interaction with the ATPase domain of Hsp70. The J- and CRR-domains are found in many prokaryotic and eukaryotic proteins [], either together or separately. In yeast, J-domains have been classified into 3 groups; the class III proteins are functionally distinct and do not appear to act as molecular chaperones []. ; GO: 0031072 heat shock protein binding; PDB: 2GUZ_C 2L6L_A 1HDJ_A 2EJ7_A 1FPO_C 2CUG_A 2QSA_A 2OCH_A 3BVO_B 3APQ_A ....
Probab=99.80 E-value=9.1e-20 Score=123.91 Aligned_cols=64 Identities=45% Similarity=0.827 Sum_probs=60.4
Q ss_pred ccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHcCChhHHHHHH
Q 028609 73 SFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYD 137 (206)
Q Consensus 73 d~Y~iLgv~~~as~~eIkkaYr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD 137 (206)
|||+||||+++++.++||++|+++++.+|||++.... ..+.+.|..|++||++|+||.+|+.||
T Consensus 1 ~~y~iLgl~~~~~~~eik~~y~~l~~~~HPD~~~~~~-~~~~~~~~~i~~Ay~~L~~~~~R~~YD 64 (64)
T PF00226_consen 1 NPYEILGLPPDASDEEIKKAYRRLSKQYHPDKNSGDE-AEAEEKFARINEAYEILSDPERRRRYD 64 (64)
T ss_dssp HHHHHCTSTTTSSHHHHHHHHHHHHHHTSTTTGTSTH-HHHHHHHHHHHHHHHHHHSHHHHHHHH
T ss_pred ChHHHCCCCCCCCHHHHHHHHHhhhhccccccchhhh-hhhhHHHHHHHHHHHHhCCHHHHHhcC
Confidence 6899999999999999999999999999999987765 567899999999999999999999998
No 18
>PRK14283 chaperone protein DnaJ; Provisional
Probab=99.80 E-value=7.3e-20 Score=164.45 Aligned_cols=72 Identities=40% Similarity=0.692 Sum_probs=66.5
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhhhccc
Q 028609 71 ELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMGLH 145 (206)
Q Consensus 71 ~~d~Y~iLgv~~~as~~eIkkaYr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~~~~ 145 (206)
..|||+||||+++|+.+|||+|||+|+++||||++++ .+|.++|++|++||+||+||.+|+.||+++..|+.
T Consensus 4 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~---~~a~~~f~~i~~Ay~~Lsd~~kR~~YD~~G~~g~~ 75 (378)
T PRK14283 4 KRDYYEVLGVDRNADKKEIKKAYRKLARKYHPDVSEE---EGAEEKFKEISEAYAVLSDDEKRQRYDQFGHAGMD 75 (378)
T ss_pred cCChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCC---ccHHHHHHHHHHHHHHhchhHHHHHHhhhcccccc
Confidence 4699999999999999999999999999999999874 36788999999999999999999999999877653
No 19
>PRK14298 chaperone protein DnaJ; Provisional
Probab=99.80 E-value=7.3e-20 Score=164.39 Aligned_cols=72 Identities=38% Similarity=0.689 Sum_probs=66.0
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhhhccc
Q 028609 71 ELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMGLH 145 (206)
Q Consensus 71 ~~d~Y~iLgv~~~as~~eIkkaYr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~~~~ 145 (206)
..|||+||||+++|+.+|||+|||+|+++||||+++. ..+.++|++|++||+||+||.+|+.||+++..|+.
T Consensus 4 ~~d~y~iLgv~~~a~~~eik~ayr~la~~~HPD~~~~---~~~~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~~ 75 (377)
T PRK14298 4 TRDYYEILGLSKDASVEDIKKAYRKLAMKYHPDKNKE---PDAEEKFKEISEAYAVLSDAEKRAQYDRFGHAGID 75 (377)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHhCccccCC---hhHHHHHHHHHHHHHHhcchHhhhhhhhcCccccc
Confidence 3699999999999999999999999999999999874 35678999999999999999999999999877654
No 20
>PRK14276 chaperone protein DnaJ; Provisional
Probab=99.80 E-value=8e-20 Score=164.30 Aligned_cols=72 Identities=43% Similarity=0.738 Sum_probs=66.2
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhhhccc
Q 028609 71 ELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMGLH 145 (206)
Q Consensus 71 ~~d~Y~iLgv~~~as~~eIkkaYr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~~~~ 145 (206)
..|||+||||+++|+.+|||+|||+|+++||||+++.. .|.++|++|++||+||+||.+|+.||+++..++.
T Consensus 3 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~---~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~~~~ 74 (380)
T PRK14276 3 NTEYYDRLGVSKDASQDEIKKAYRKLSKKYHPDINKEP---GAEEKYKEVQEAYETLSDPQKRAAYDQYGAAGAN 74 (380)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc---CHHHHHHHHHHHHHHhcCHhhhhhHhhcCCcccc
Confidence 36999999999999999999999999999999998753 5678999999999999999999999999887654
No 21
>PRK14301 chaperone protein DnaJ; Provisional
Probab=99.79 E-value=1e-19 Score=163.32 Aligned_cols=73 Identities=41% Similarity=0.689 Sum_probs=67.1
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhhhccc
Q 028609 71 ELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMGLH 145 (206)
Q Consensus 71 ~~d~Y~iLgv~~~as~~eIkkaYr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~~~~ 145 (206)
..|||+||||+++|+.++||+|||+|+++||||+++.. .+|.++|++|++||+||+||.+|+.||.++..|+.
T Consensus 3 ~~~~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~--~~a~~~f~~i~~Ay~vL~d~~kr~~yD~~g~~g~~ 75 (373)
T PRK14301 3 QRDYYEVLGVSRDASEDEIKKAYRKLALQYHPDRNPDN--PEAEQKFKEAAEAYEVLRDAEKRARYDRFGHAGVN 75 (373)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHhCCCcCCCC--hHHHHHHHHHHHHHHHhcchhhhhhhhhccccccc
Confidence 36999999999999999999999999999999999764 46788999999999999999999999999877654
No 22
>PRK14297 chaperone protein DnaJ; Provisional
Probab=99.79 E-value=9.5e-20 Score=163.81 Aligned_cols=72 Identities=36% Similarity=0.651 Sum_probs=66.7
Q ss_pred cccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhhhccc
Q 028609 72 LSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMGLH 145 (206)
Q Consensus 72 ~d~Y~iLgv~~~as~~eIkkaYr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~~~~ 145 (206)
.|||+||||+++|+.++||+|||+|+++||||+++.. .+|.++|++|++||+||+||.+|+.||+++..++.
T Consensus 4 ~d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~~--~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~G~~~~~ 75 (380)
T PRK14297 4 KDYYEVLGLEKGASDDEIKKAFRKLAIKYHPDKNKGN--KEAEEKFKEINEAYQVLSDPQKKAQYDQFGTADFN 75 (380)
T ss_pred CChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc--HHHHHHHHHHHHHHHHhcCHhhhCchhhcCccccc
Confidence 6999999999999999999999999999999999754 46789999999999999999999999999877654
No 23
>PRK14295 chaperone protein DnaJ; Provisional
Probab=99.79 E-value=1.4e-19 Score=163.26 Aligned_cols=73 Identities=40% Similarity=0.713 Sum_probs=66.1
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHcCChhHHHHHHH----hhhhccc
Q 028609 71 ELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDR----DLSMGLH 145 (206)
Q Consensus 71 ~~d~Y~iLgv~~~as~~eIkkaYr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~----~~~~~~~ 145 (206)
..|||+||||+++|+.++||+|||+|+++||||+++.. .+|.++|++|++||+||+||.+|+.||+ ++..|+.
T Consensus 8 ~~d~y~~Lgv~~~a~~~eik~ayr~la~~~HPD~~~~~--~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~~~~~G~~g~~ 84 (389)
T PRK14295 8 EKDYYKVLGVPKDATEAEIKKAYRKLAREYHPDANKGD--AKAEERFKEISEAYDVLSDEKKRKEYDEARSLFGNGGFR 84 (389)
T ss_pred ccCHHHhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCc--hhHHHHHHHHHHHHHHHCchhhHHHHHHHHhhhcccccc
Confidence 36999999999999999999999999999999998754 4678999999999999999999999998 7766553
No 24
>PRK14284 chaperone protein DnaJ; Provisional
Probab=99.79 E-value=1.5e-19 Score=163.12 Aligned_cols=71 Identities=46% Similarity=0.746 Sum_probs=65.7
Q ss_pred cccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhhhcc
Q 028609 72 LSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMGL 144 (206)
Q Consensus 72 ~d~Y~iLgv~~~as~~eIkkaYr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~~~ 144 (206)
.|||+||||+++|+.++||+|||+|+++||||++++. ..|.++|++|++||+||+||.+|+.||+++..++
T Consensus 1 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~--~~a~~~f~~i~~Ay~vL~d~~kR~~YD~~G~~g~ 71 (391)
T PRK14284 1 MDYYTILGVSKTASPEEIKKAYRKLAVKYHPDKNPGD--AEAEKRFKEVSEAYEVLSDAQKRESYDRYGKDGP 71 (391)
T ss_pred CCHHHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc--hHHHHHHHHHHHHHHHhcCHHHHHHHHhcccccc
Confidence 4899999999999999999999999999999999764 4678899999999999999999999999987654
No 25
>PRK14291 chaperone protein DnaJ; Provisional
Probab=99.79 E-value=1.3e-19 Score=163.11 Aligned_cols=72 Identities=39% Similarity=0.727 Sum_probs=66.1
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhhhccc
Q 028609 71 ELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMGLH 145 (206)
Q Consensus 71 ~~d~Y~iLgv~~~as~~eIkkaYr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~~~~ 145 (206)
..|||+||||+++|+.++||+|||+|+++||||+++. ..|.++|++|++||+||+||.+|+.||.++..++.
T Consensus 2 ~~d~Y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~---~~~~~~f~~i~~Ay~vLsd~~kR~~YD~~g~~~~~ 73 (382)
T PRK14291 2 KKDYYEILGVSRNATQEEIKKAYRRLARKYHPDFNKN---PEAEEKFKEINEAYQVLSDPEKRKLYDQFGHAAFS 73 (382)
T ss_pred CCCHHHhhCCCCCCCHHHHHHHHHHHHHHHCCCCCCC---ccHHHHHHHHHHHHHHhcCHHHHHHHhhhcccccc
Confidence 3699999999999999999999999999999999975 35678999999999999999999999999877654
No 26
>PRK14299 chaperone protein DnaJ; Provisional
Probab=99.79 E-value=1.8e-19 Score=156.71 Aligned_cols=71 Identities=41% Similarity=0.711 Sum_probs=65.3
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhhhcc
Q 028609 71 ELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMGL 144 (206)
Q Consensus 71 ~~d~Y~iLgv~~~as~~eIkkaYr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~~~ 144 (206)
..|||+||||+++|+.++||+|||+|+++||||++++ ..+.++|++|++||+||+||.+|+.||.++..+.
T Consensus 3 ~~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~---~~~~~~f~~i~~Ay~~L~d~~kr~~yD~~g~~~~ 73 (291)
T PRK14299 3 YKDYYAILGVPKNASQDEIKKAFKKLARKYHPDVNKS---PGAEEKFKEINEAYTVLSDPEKRRIYDTYGTTAA 73 (291)
T ss_pred CCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC---hhHHHHHHHHHHHHHHhcCHHHHHHHHhcCCccc
Confidence 3699999999999999999999999999999999874 3577899999999999999999999999987654
No 27
>PRK14280 chaperone protein DnaJ; Provisional
Probab=99.79 E-value=1.7e-19 Score=161.92 Aligned_cols=71 Identities=39% Similarity=0.697 Sum_probs=65.7
Q ss_pred cccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhhhccc
Q 028609 72 LSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMGLH 145 (206)
Q Consensus 72 ~d~Y~iLgv~~~as~~eIkkaYr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~~~~ 145 (206)
.|||+||||+++|+.++||+|||+|+++||||+++.. .|.++|++|++||+||+||.+|+.||+++..++.
T Consensus 4 ~~~y~iLgv~~~a~~~eik~ayr~la~~~HpD~~~~~---~a~~~f~~i~~Ay~vL~d~~kr~~yD~~G~~~~~ 74 (376)
T PRK14280 4 RDYYEVLGVSKSASKDEIKKAYRKLSKKYHPDINKEE---GADEKFKEISEAYEVLSDDQKRAQYDQFGHAGPN 74 (376)
T ss_pred CChHHhhCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc---cHHHHHHHHHHHHHHhccHhHHHHHHhcCccccc
Confidence 6999999999999999999999999999999998753 5678999999999999999999999999877654
No 28
>PRK14281 chaperone protein DnaJ; Provisional
Probab=99.78 E-value=2.2e-19 Score=162.34 Aligned_cols=72 Identities=40% Similarity=0.675 Sum_probs=66.5
Q ss_pred cccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhhhccc
Q 028609 72 LSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMGLH 145 (206)
Q Consensus 72 ~d~Y~iLgv~~~as~~eIkkaYr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~~~~ 145 (206)
.|||+||||+++|+.++||+|||+|+++||||+++.. .+|.++|++|++||+||+||.+|+.||.++..++.
T Consensus 3 ~d~y~iLgv~~~a~~~eikkayr~la~~~HPD~~~~~--~~a~~~f~~i~~Ay~vL~d~~~r~~yD~~g~~~~~ 74 (397)
T PRK14281 3 RDYYEVLGVSRSADKDEIKKAYRKLALKYHPDKNPDN--KEAEEHFKEVNEAYEVLSNDDKRRRYDQFGHAGVG 74 (397)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCcCCCc--hHHHHHHHHHHHHHHHhhhhhhhhhhhhccchhhc
Confidence 5999999999999999999999999999999999754 46778999999999999999999999999887654
No 29
>KOG0691 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.78 E-value=6.1e-19 Score=152.83 Aligned_cols=75 Identities=43% Similarity=0.694 Sum_probs=69.6
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhhhcccch
Q 028609 71 ELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMGLHLA 147 (206)
Q Consensus 71 ~~d~Y~iLgv~~~as~~eIkkaYr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~~~~~~ 147 (206)
..|||+||||..+++..+|++||+..+++||||||+++ +.|.++|+.|.+||+||+|+..|..||..+..+....
T Consensus 4 ~~dyY~lLgi~~~at~~eIkKaYr~kaL~~HPDKNp~d--P~A~ekFq~L~eAy~VL~D~~~R~~YDk~~k~~~~~~ 78 (296)
T KOG0691|consen 4 DTDYYDLLGISEDATDAEIKKAYRKKALQYHPDKNPGD--PQAAEKFQELSEAYEVLSDEESRAAYDKLRKSGSSAQ 78 (296)
T ss_pred cchHHHHhCCCCCCCHHHHHHHHHHHHHhcCCCCCCCC--hHHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcccch
Confidence 67999999999999999999999999999999999988 4588999999999999999999999999998776543
No 30
>PRK10767 chaperone protein DnaJ; Provisional
Probab=99.78 E-value=3.4e-19 Score=159.73 Aligned_cols=73 Identities=42% Similarity=0.741 Sum_probs=66.7
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhhhccc
Q 028609 71 ELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMGLH 145 (206)
Q Consensus 71 ~~d~Y~iLgv~~~as~~eIkkaYr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~~~~ 145 (206)
..|||+||||+++|+.++||+|||+|+++||||+++.. ..|.++|++|++||+||+||.+|+.||.++..++.
T Consensus 3 ~~d~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~--~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~g~~~~~ 75 (371)
T PRK10767 3 KRDYYEVLGVSRNASEDEIKKAYRKLAMKYHPDRNPGD--KEAEEKFKEIKEAYEVLSDPQKRAAYDQYGHAAFE 75 (371)
T ss_pred CCChHHhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCc--HHHHHHHHHHHHHHHHhcchhhhhHhhhccccccc
Confidence 36999999999999999999999999999999998754 45788999999999999999999999999876654
No 31
>PRK14278 chaperone protein DnaJ; Provisional
Probab=99.77 E-value=3.2e-19 Score=160.30 Aligned_cols=68 Identities=43% Similarity=0.706 Sum_probs=63.7
Q ss_pred cccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhhh
Q 028609 72 LSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSM 142 (206)
Q Consensus 72 ~d~Y~iLgv~~~as~~eIkkaYr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~ 142 (206)
.|||+||||+++|+.++||+|||+|+++||||++++ ++|.++|++|++||+||+||.+|..||.++..
T Consensus 3 ~d~y~iLgv~~~a~~~eik~ayr~la~~~hpD~~~~---~~a~~~f~~i~~Ay~vL~d~~~r~~YD~~G~~ 70 (378)
T PRK14278 3 RDYYGLLGVSRNASDAEIKRAYRKLARELHPDVNPD---EEAQEKFKEISVAYEVLSDPEKRRIVDLGGDP 70 (378)
T ss_pred CCcceecCCCCCCCHHHHHHHHHHHHHHHCCCCCCc---HHHHHHHHHHHHHHHHhchhhhhhhhhccCCc
Confidence 599999999999999999999999999999999974 46788999999999999999999999998764
No 32
>KOG0717 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=6.6e-19 Score=157.88 Aligned_cols=73 Identities=42% Similarity=0.702 Sum_probs=66.9
Q ss_pred cccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhh
Q 028609 68 ESKELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLS 141 (206)
Q Consensus 68 ~~~~~d~Y~iLgv~~~as~~eIkkaYr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~ 141 (206)
....+.||+||||.++|+..+||++||+|||+||||++++. .++|+++|+.|+.||+|||||..|+.||.+-.
T Consensus 4 ~~~~~c~YE~L~v~~~a~d~eik~~YRklALq~HPDknpd~-ieeat~~F~~i~aAYeVLSdp~eR~wyd~hre 76 (508)
T KOG0717|consen 4 PFKKRCYYEVLGVERDADDDEIKKNYRKLALQYHPDKNPDR-IEEATQQFQLIQAAYEVLSDPQERAWYDSHRE 76 (508)
T ss_pred chhhhHHHHHhcccccCCHHHHHHHHHHHHHhhCCCCCCcc-HHHHHHHHHHHHHHHHHhcChHhhhhHHHHHH
Confidence 34568999999999999999999999999999999998765 47899999999999999999999999997654
No 33
>PRK14289 chaperone protein DnaJ; Provisional
Probab=99.76 E-value=9.3e-19 Score=157.70 Aligned_cols=73 Identities=38% Similarity=0.716 Sum_probs=67.0
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhhhccc
Q 028609 71 ELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMGLH 145 (206)
Q Consensus 71 ~~d~Y~iLgv~~~as~~eIkkaYr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~~~~ 145 (206)
..|||+||||+++|+.+|||+|||+|+++||||+++.. .+|.++|++|++||+||+||.+|+.||.++..++.
T Consensus 4 ~~~~y~~Lgv~~~a~~~eik~ayr~la~~~HpD~~~~~--~~a~~~f~~i~~Ay~~L~d~~~R~~yD~~G~~~~~ 76 (386)
T PRK14289 4 KRDYYEVLGVSKTATVDEIKKAYRKKAIQYHPDKNPGD--KEAEEKFKEAAEAYDVLSDPDKRSRYDQFGHAGVG 76 (386)
T ss_pred cCCHHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCC--hHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccc
Confidence 46999999999999999999999999999999999754 46789999999999999999999999999876653
No 34
>PRK14290 chaperone protein DnaJ; Provisional
Probab=99.76 E-value=1e-18 Score=156.42 Aligned_cols=73 Identities=36% Similarity=0.711 Sum_probs=66.6
Q ss_pred cccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhhhccc
Q 028609 72 LSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMGLH 145 (206)
Q Consensus 72 ~d~Y~iLgv~~~as~~eIkkaYr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~~~~ 145 (206)
.|||+||||+++|+.++||+|||+|+++||||+++.. ..+|.++|+.|++||+||+||.+|+.||.++..++.
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~-~~~a~~~f~~i~~Ay~~L~d~~~r~~yd~~G~~~~~ 75 (365)
T PRK14290 3 KDYYKILGVDRNASQEDIKKAFRELAKKWHPDLHPGN-KAEAEEKFKEISEAYEVLSDPQKRRQYDQTGTVDFG 75 (365)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc-hhHHHHHHHHHHHHHHHhcChhhhhhhcccCCcccc
Confidence 5999999999999999999999999999999998754 236789999999999999999999999999876653
No 35
>TIGR02349 DnaJ_bact chaperone protein DnaJ. This model represents bacterial forms of DnaJ, part of the DnaK-DnaJ-GrpE chaperone system. The three components typically are encoded by consecutive genes. DnaJ homologs occur in many genomes, typically not near DnaK and GrpE-like genes; most such genes are not included by this family. Eukaryotic (mitochondrial and chloroplast) forms are not included in the scope of this family.
Probab=99.75 E-value=1.2e-18 Score=155.28 Aligned_cols=70 Identities=43% Similarity=0.773 Sum_probs=64.5
Q ss_pred ccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhhhccc
Q 028609 73 SFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMGLH 145 (206)
Q Consensus 73 d~Y~iLgv~~~as~~eIkkaYr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~~~~ 145 (206)
|||+||||+++|+.++||+||++|+++||||+++. .++.++|+.|++||+||+||.+|..||.++..++.
T Consensus 1 d~y~~Lgv~~~a~~~~ik~ayr~la~~~HPD~~~~---~~~~~~f~~i~~Ay~vL~d~~~R~~yd~~g~~~~~ 70 (354)
T TIGR02349 1 DYYEILGVSKDASEEEIKKAYRKLAKKYHPDRNKD---KEAEEKFKEINEAYEVLSDPEKRAQYDQFGHAGFN 70 (354)
T ss_pred ChHHhCCCCCCCCHHHHHHHHHHHHHHHCCCCCCC---ccHHHHHHHHHHHHHHhhChHHHHhhhhccccccc
Confidence 79999999999999999999999999999999973 35678999999999999999999999999877654
No 36
>PRK14300 chaperone protein DnaJ; Provisional
Probab=99.75 E-value=1.3e-18 Score=156.12 Aligned_cols=71 Identities=31% Similarity=0.641 Sum_probs=65.1
Q ss_pred cccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhhhccc
Q 028609 72 LSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMGLH 145 (206)
Q Consensus 72 ~d~Y~iLgv~~~as~~eIkkaYr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~~~~ 145 (206)
.|||+||||+++|+.+|||+|||+++++||||+++.. .+.++|++|++||+||+||.+|+.||.++..++.
T Consensus 3 ~~~y~iLgv~~~as~~eik~ayr~la~~~HPD~~~~~---~~~~~f~~i~~Ay~~L~d~~~r~~yD~~G~~~~~ 73 (372)
T PRK14300 3 QDYYQILGVSKTASQADLKKAYLKLAKQYHPDTTDAK---DAEKKFKEINAAYDVLKDEQKRAAYDRFGHDAFQ 73 (372)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc---CHHHHHHHHHHHHHHhhhHhHhhHHHhccccccc
Confidence 5999999999999999999999999999999998743 4678999999999999999999999999876654
No 37
>KOG0715 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=1.6e-18 Score=150.49 Aligned_cols=68 Identities=40% Similarity=0.682 Sum_probs=65.0
Q ss_pred ccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhhhc
Q 028609 73 SFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMG 143 (206)
Q Consensus 73 d~Y~iLgv~~~as~~eIkkaYr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~~ 143 (206)
|||+||||+++|+..|||+||++|+++||||.+... .|.++|++|.+||+||+|+++|..||..+..+
T Consensus 44 d~Y~vLgv~~~At~~EIK~Af~~LaKkyHPD~n~~~---~a~~kF~eI~~AYEiLsd~eKR~~YD~~~~~~ 111 (288)
T KOG0715|consen 44 DYYKVLGVSRNATLSEIKSAFRKLAKKYHPDVNKDK---EASKKFKEISEAYEILSDEEKRQEYDVYGLEQ 111 (288)
T ss_pred chhhhhCcCCCCCHHHHHHHHHHHHHhhCCCCCCCc---chhhHHHHHHHHHHHhcCHHHHHHHHHhhhhc
Confidence 999999999999999999999999999999999876 67889999999999999999999999998765
No 38
>PRK05014 hscB co-chaperone HscB; Provisional
Probab=99.74 E-value=1.1e-17 Score=135.21 Aligned_cols=98 Identities=23% Similarity=0.420 Sum_probs=78.0
Q ss_pred cccccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCc---cHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhhhcccc
Q 028609 72 LSFYDLLGIPES--VSLVEIKQAYKQMARKYHPDVSPPD---RVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMGLHL 146 (206)
Q Consensus 72 ~d~Y~iLgv~~~--as~~eIkkaYr~l~~~~HPDk~~~~---~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~~~~~ 146 (206)
.|||+||||+++ ++..+|+++|+++++++|||+.... .+..+.+.|..|++||++|+||.+|+.|+..+. |...
T Consensus 1 ~~yf~llgl~~~~~~d~~~L~~~yr~l~~~~HPDk~~~~~~~~~~~a~~~s~~iN~AY~~L~dp~~Ra~Yll~l~-g~~~ 79 (171)
T PRK05014 1 MDYFTLFGLPARYDIDTQLLASRYQELQRQFHPDKFANASERERLLAVQQAATINDAYQTLKHPLKRAEYLLSLH-GFDL 79 (171)
T ss_pred CCHHHHCCCCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCcHHHHHHHHHHHHHHHHHHHHHCChhHHHHHHHHhc-CCcc
Confidence 489999999997 6789999999999999999997543 233467899999999999999999999998765 5554
Q ss_pred hhhhhcccCchhhhhhHHHHHHHH
Q 028609 147 AFSARRRQQNDDFQVRSEWRNRWQ 170 (206)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~ 170 (206)
........+...++.+++|++...
T Consensus 80 ~~~~~~~~d~efLme~me~rE~le 103 (171)
T PRK05014 80 AHEQHTVRDTAFLMEQMELREELE 103 (171)
T ss_pred ccccCCcCCHHHHHHHHHHHHHHH
Confidence 333333344567788899988653
No 39
>PRK14292 chaperone protein DnaJ; Provisional
Probab=99.74 E-value=2.5e-18 Score=154.12 Aligned_cols=69 Identities=41% Similarity=0.687 Sum_probs=64.3
Q ss_pred cccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhhhc
Q 028609 72 LSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMG 143 (206)
Q Consensus 72 ~d~Y~iLgv~~~as~~eIkkaYr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~~ 143 (206)
.|||+||||+++|+.++||+|||+|+++||||++++ ..|.++|+.|++||+||+||.+|+.||.++..+
T Consensus 2 ~d~y~~Lgv~~~a~~~~ik~ayr~l~~~~hpD~~~~---~~a~~~~~~i~~Ay~vL~d~~~r~~yd~~G~~~ 70 (371)
T PRK14292 2 MDYYELLGVSRTASADEIKSAYRKLALKYHPDRNKE---KGAAEKFAQINEAYAVLSDAEKRAHYDRFGTAP 70 (371)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCCCCCCC---hhHHHHHHHHHHHHHHhcchhhhhhHhhcCCcc
Confidence 589999999999999999999999999999999974 357789999999999999999999999998765
No 40
>PRK14293 chaperone protein DnaJ; Provisional
Probab=99.74 E-value=3.1e-18 Score=153.75 Aligned_cols=71 Identities=41% Similarity=0.730 Sum_probs=65.1
Q ss_pred cccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhhhccc
Q 028609 72 LSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMGLH 145 (206)
Q Consensus 72 ~d~Y~iLgv~~~as~~eIkkaYr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~~~~ 145 (206)
.|||+||||+++|+.++||+|||+|+++||||+++.. .+.++|+.|++||+||+||.+|+.||.++..|+.
T Consensus 3 ~d~y~vLgv~~~a~~~eik~ayr~la~~~HPD~~~~~---~a~~~f~~i~~Ay~vL~~~~~R~~yd~~g~~g~~ 73 (374)
T PRK14293 3 ADYYEILGVSRDADKDELKRAYRRLARKYHPDVNKEP---GAEDRFKEINRAYEVLSDPETRARYDQFGEAGVS 73 (374)
T ss_pred CChhhhcCCCCCCCHHHHHHHHHHHHHHHCCCCCCCc---CHHHHHHHHHHHHHHHhchHHHHHHhhccccccc
Confidence 5999999999999999999999999999999998753 4678999999999999999999999999876553
No 41
>PTZ00341 Ring-infected erythrocyte surface antigen; Provisional
Probab=99.73 E-value=6.7e-18 Score=162.75 Aligned_cols=74 Identities=27% Similarity=0.500 Sum_probs=67.9
Q ss_pred ccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhhhccc
Q 028609 69 SKELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMGLH 145 (206)
Q Consensus 69 ~~~~d~Y~iLgv~~~as~~eIkkaYr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~~~~ 145 (206)
....+||+||||+++|+..+||+|||+||++||||+++.+ .|.++|+.|++||+||+||.+|+.||.+|..|+.
T Consensus 570 ~~d~dYYdILGVs~dAS~~EIKKAYRKLAlkyHPDKN~~~---~A~ekFq~I~EAYeVLSDp~kRk~YD~~G~~Gl~ 643 (1136)
T PTZ00341 570 IPDTLFYDILGVGVNADMKEISERYFKLAENYYPPKRSGN---EGFHKFKKINEAYQILGDIDKKKMYNKFGYDGIK 643 (1136)
T ss_pred CCCCChHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCc---hHHHHHHHHHHHHHHhCCHHHHHHHhhccccccC
Confidence 3458999999999999999999999999999999999764 4678999999999999999999999999987755
No 42
>PRK10266 curved DNA-binding protein CbpA; Provisional
Probab=99.72 E-value=6.9e-18 Score=147.77 Aligned_cols=67 Identities=43% Similarity=0.693 Sum_probs=62.5
Q ss_pred cccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhh
Q 028609 72 LSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLS 141 (206)
Q Consensus 72 ~d~Y~iLgv~~~as~~eIkkaYr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~ 141 (206)
.|||+||||+++|+.++||+|||+|+++||||+++.. .+.++|++|++||+||+||.+|+.||.++.
T Consensus 4 ~d~y~~Lgv~~~a~~~eik~ayr~la~k~HPD~~~~~---~~~~~f~~i~~Ay~~L~~~~kr~~yD~~g~ 70 (306)
T PRK10266 4 KDYYAIMGVKPTDDLKTIKTAYRRLARKYHPDVSKEP---DAEARFKEVAEAWEVLSDEQRRAEYDQLWQ 70 (306)
T ss_pred CChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc---cHHHHHHHHHHHHHHhhhHHHHHHHHHhhc
Confidence 6999999999999999999999999999999998643 577899999999999999999999999864
No 43
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=99.71 E-value=1.7e-17 Score=110.95 Aligned_cols=59 Identities=51% Similarity=0.925 Sum_probs=54.2
Q ss_pred cccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHcCChh
Q 028609 72 LSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPG 131 (206)
Q Consensus 72 ~d~Y~iLgv~~~as~~eIkkaYr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~ 131 (206)
.|||+||||+++++.++||++|+++++.+|||+++.. ...+.+.|..|++||++|+||.
T Consensus 1 ~~~y~vLgl~~~~~~~~ik~ay~~l~~~~HPD~~~~~-~~~~~~~~~~l~~Ay~~L~~~~ 59 (60)
T smart00271 1 TDYYEILGVPRDASLDEIKKAYRKLALKYHPDKNPGD-KEEAEEKFKEINEAYEVLSDPE 59 (60)
T ss_pred CCHHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc-hHHHHHHHHHHHHHHHHHcCCC
Confidence 4899999999999999999999999999999998754 3577889999999999999985
No 44
>PRK01356 hscB co-chaperone HscB; Provisional
Probab=99.70 E-value=5.2e-17 Score=130.70 Aligned_cols=97 Identities=25% Similarity=0.318 Sum_probs=76.1
Q ss_pred cccccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCc-cHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhhhcccchh
Q 028609 72 LSFYDLLGIPES--VSLVEIKQAYKQMARKYHPDVSPPD-RVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMGLHLAF 148 (206)
Q Consensus 72 ~d~Y~iLgv~~~--as~~eIkkaYr~l~~~~HPDk~~~~-~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~~~~~~~ 148 (206)
.|||+||||++. ++..+|+++|+++++++|||++... .+..+.+.+..|++||+||+||.+|+.|+..+. |+....
T Consensus 2 ~~yf~llgl~~~f~id~~~L~~aYr~lq~~~HPDk~~~~~~k~~~~~~s~~in~AY~~L~dp~~Ra~YlL~l~-g~~~~~ 80 (166)
T PRK01356 2 QNYFQLLGLPQEYNIDLKILEKQYFAMQVKYHPDKAKTLQEKEQNLIIASELNNAYSTLKDALKRAEYMLLLQ-NINLND 80 (166)
T ss_pred CCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHcc-CCCCCC
Confidence 589999999997 7899999999999999999998642 233455678999999999999999999998875 665443
Q ss_pred hhh-cccCchhhhhhHHHHHHH
Q 028609 149 SAR-RRQQNDDFQVRSEWRNRW 169 (206)
Q Consensus 149 ~~~-~~~~~~~~~~~~~~~~~~ 169 (206)
... ...+...++..++|++..
T Consensus 81 ~~~~~~~d~~fLme~me~rE~l 102 (166)
T PRK01356 81 EKTRSLLSPLELSIFWDEMERI 102 (166)
T ss_pred ccccccCCHHHHHHHHHHHHHH
Confidence 222 233445667788887654
No 45
>PRK03578 hscB co-chaperone HscB; Provisional
Probab=99.70 E-value=9.7e-17 Score=130.22 Aligned_cols=99 Identities=25% Similarity=0.387 Sum_probs=77.4
Q ss_pred ccccccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCcc---HHHHHHHHHHHHHHHHHcCChhHHHHHHHhhhhccc
Q 028609 71 ELSFYDLLGIPES--VSLVEIKQAYKQMARKYHPDVSPPDR---VEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMGLH 145 (206)
Q Consensus 71 ~~d~Y~iLgv~~~--as~~eIkkaYr~l~~~~HPDk~~~~~---~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~~~~ 145 (206)
..|||+||||+++ ++..+|+++|+++++++|||++.... +..+.+.+..||+||++|+||.+|+.|+..+. |+.
T Consensus 5 ~~dyf~llglp~~f~~d~~~L~~~yr~lq~~~HPD~~~~~~~~e~~~a~~~s~~iN~AY~tL~~p~~Ra~Yll~l~-G~~ 83 (176)
T PRK03578 5 KDDHFSLFGLPARFALDEAALDAAYRTVQAQVHPDRFAAAGDAEKRVAMQWATRANEAYQTLRDPLKRARYLLHLR-GVD 83 (176)
T ss_pred CCCHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCCHHHHHHHHHHHHHHHHHHHHhCChhhHHHHHHHhc-CCC
Confidence 3699999999996 67899999999999999999975432 23356678999999999999999999998765 555
Q ss_pred chhhhhcccCchhhhhhHHHHHHHH
Q 028609 146 LAFSARRRQQNDDFQVRSEWRNRWQ 170 (206)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (206)
.........+...++.+++|++...
T Consensus 84 ~~~e~~~~~d~~fLme~mE~rE~le 108 (176)
T PRK03578 84 VQAENNTAMPPAFLMQQMEWREAIE 108 (176)
T ss_pred CccccCCCCCHHHHHHHHHHHHHHH
Confidence 4332233334557788899988653
No 46
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=99.69 E-value=6.3e-17 Score=106.31 Aligned_cols=55 Identities=51% Similarity=0.915 Sum_probs=51.4
Q ss_pred ccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHcCC
Q 028609 73 SFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSD 129 (206)
Q Consensus 73 d~Y~iLgv~~~as~~eIkkaYr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsd 129 (206)
|||+||||+++++.++||++|+++++.+|||++... ..+.+.|..|++||++|+|
T Consensus 1 ~~y~vLgl~~~~~~~~ik~~y~~l~~~~HPD~~~~~--~~~~~~~~~l~~Ay~~L~d 55 (55)
T cd06257 1 DYYDILGVPPDASDEEIKKAYRKLALKYHPDKNPDD--PEAEEKFKEINEAYEVLSD 55 (55)
T ss_pred ChHHHcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCc--HHHHHHHHHHHHHHHHhcC
Confidence 699999999999999999999999999999999764 5678899999999999987
No 47
>PRK00294 hscB co-chaperone HscB; Provisional
Probab=99.69 E-value=1.9e-16 Score=128.09 Aligned_cols=99 Identities=23% Similarity=0.344 Sum_probs=78.7
Q ss_pred cccccccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCc---cHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhhhcc
Q 028609 70 KELSFYDLLGIPES--VSLVEIKQAYKQMARKYHPDVSPPD---RVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMGL 144 (206)
Q Consensus 70 ~~~d~Y~iLgv~~~--as~~eIkkaYr~l~~~~HPDk~~~~---~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~~~ 144 (206)
...|||++|||++. ++..+|+++|+++++++|||++... ++..+.+.|..||+||+||+||.+|+.|+..+. |.
T Consensus 2 ~~~~~F~l~~l~~~f~id~~~L~~~Yr~Lq~~~HPDk~~~~~~~e~~~a~~~s~~IN~AY~~L~~p~~Ra~YlL~l~-g~ 80 (173)
T PRK00294 2 GTPCHFALFDLQPSFRLDLDQLATRYRELAREVHPDRFADAPEREQRLALERSASLNEAYQTLKSPPRRARYLLALS-GH 80 (173)
T ss_pred CCCChhhhcCcCCCCCCCHHHHHHHHHHHHHHHCcCCCCCCcHHHHHHHHHHHHHHHHHHHHhCChhhhHHHHHHhc-CC
Confidence 45799999999998 6789999999999999999997543 234577899999999999999999999998875 55
Q ss_pred cchhhhhcccCchhhhhhHHHHHHHH
Q 028609 145 HLAFSARRRQQNDDFQVRSEWRNRWQ 170 (206)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (206)
.... .....+...++.+++|++...
T Consensus 81 ~~~~-~~~~~d~~fLme~me~rE~le 105 (173)
T PRK00294 81 EVPL-EVTVHDPEFLLQQMQLREELE 105 (173)
T ss_pred CCCc-ccCCCCHHHHHHHHHHHHHHH
Confidence 5432 122234457788899988653
No 48
>TIGR03835 termin_org_DnaJ terminal organelle assembly protein TopJ. This model describes TopJ (MG_200, CbpA), a DnaJ homolog and probable assembly protein of the Mycoplasma terminal organelle. The terminal organelle is involved in both cytadherence and gliding motility.
Probab=99.66 E-value=3.6e-16 Score=148.04 Aligned_cols=71 Identities=35% Similarity=0.626 Sum_probs=65.3
Q ss_pred cccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhhhccc
Q 028609 72 LSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMGLH 145 (206)
Q Consensus 72 ~d~Y~iLgv~~~as~~eIkkaYr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~~~~ 145 (206)
.|||+||||+++|+.++||++||+|+++||||+++. ..+.++|+.|++||++|+||.+|+.||.++..|..
T Consensus 2 ~DYYeVLGVs~dAS~eEIKKAYRKLAKKyHPDKn~~---~eAeekFqeINEAYEVLSDP~KRa~YD~fG~aG~d 72 (871)
T TIGR03835 2 RDYYEVLGIDRDADEQEIKKAFRKLAKKYHPDRNKA---PDAASIFAEINEANDVLSNPKKRANYDKYGHDGVD 72 (871)
T ss_pred CChhHhcCCCCCCCHHHHHHHHHHHHHHHCcCCCCC---hhHHHHHHHHHHHHHHhCCHHHHHHHhhhcccccc
Confidence 589999999999999999999999999999999876 35678999999999999999999999999876653
No 49
>COG2214 CbpA DnaJ-class molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=3.1e-16 Score=127.56 Aligned_cols=70 Identities=47% Similarity=0.788 Sum_probs=64.5
Q ss_pred cccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHcCChhHHHHHHHhh
Q 028609 70 KELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDL 140 (206)
Q Consensus 70 ~~~d~Y~iLgv~~~as~~eIkkaYr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~ 140 (206)
...+||+||||+++|+..+|+++|++++++||||+++.... .+.+.|+.|++||+||+|+.+|..||..+
T Consensus 4 ~~~~~y~iLgv~~~as~~eik~ayrkla~~~HPD~~~~~~~-~a~~~f~~i~~Ay~vLsd~~~r~~yd~~~ 73 (237)
T COG2214 4 DLLDYYEILGVPPNASLEEIKKAYRKLALKYHPDRNPGDPK-VAEEKFKEINEAYEILSDPERRAEYDKIG 73 (237)
T ss_pred hhhhHHHHhCCCCCCCHHHHHHHHHHHHHHhCCCCCCCchh-HHHHHHHHHHHHHHHhhCHHHHHHhhhhc
Confidence 45789999999999999999999999999999999987643 57899999999999999999999999863
No 50
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.64 E-value=3.4e-16 Score=128.87 Aligned_cols=74 Identities=32% Similarity=0.587 Sum_probs=66.4
Q ss_pred cccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhhhc
Q 028609 68 ESKELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMG 143 (206)
Q Consensus 68 ~~~~~d~Y~iLgv~~~as~~eIkkaYr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~~ 143 (206)
.....|+|+||||+++++..|||+|||+|+++|||||+++. ++.++.|..|.+||+.|+|+..|..|..+|...
T Consensus 95 ~~~~fDPyEILGl~pgas~~eIKkaYR~LSik~HPDK~~~~--~~~e~~~~~I~KAY~aLTD~~sreN~ekYG~PD 168 (230)
T KOG0721|consen 95 ERQKFDPYEILGLDPGASEKEIKKAYRRLSIKYHPDKQPPE--EGDEEFFEAIAKAYQALTDKKSRENWEKYGNPD 168 (230)
T ss_pred HhhcCCcHHhhCCCCCCCHHHHHHHHHHhhhhhCCCcCCCc--chhHHHHHHHHHHHHHhcchhhHHHHHHhCCCC
Confidence 45567999999999999999999999999999999999875 344578999999999999999999999998643
No 51
>PHA03102 Small T antigen; Reviewed
Probab=99.61 E-value=4.3e-16 Score=123.44 Aligned_cols=68 Identities=19% Similarity=0.323 Sum_probs=61.3
Q ss_pred cccccccCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhhhccc
Q 028609 72 LSFYDLLGIPESV--SLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMGLH 145 (206)
Q Consensus 72 ~d~Y~iLgv~~~a--s~~eIkkaYr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~~~~ 145 (206)
..+|+||||+++| +.++||+|||++++++|||+++++ ++|+.|++||++|+|+.+|..||.++.....
T Consensus 5 ~~l~~vLGl~~~A~~s~~eIKkAYr~la~~~HPDkgg~~------e~~k~in~Ay~~L~d~~~r~~yd~~g~~~~~ 74 (153)
T PHA03102 5 KELMDLLGLPRSAWGNLPLMRKAYLRKCLEFHPDKGGDE------EKMKELNTLYKKFRESVKSLRDLDGEEDSSS 74 (153)
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCchh------HHHHHHHHHHHHHhhHHHhccccccCCcccc
Confidence 4689999999999 999999999999999999997542 5899999999999999999999999876533
No 52
>PRK01773 hscB co-chaperone HscB; Provisional
Probab=99.56 E-value=1.8e-14 Score=116.64 Aligned_cols=98 Identities=21% Similarity=0.303 Sum_probs=79.7
Q ss_pred cccccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCCCc---cHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhhhcccc
Q 028609 72 LSFYDLLGIPES--VSLVEIKQAYKQMARKYHPDVSPPD---RVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMGLHL 146 (206)
Q Consensus 72 ~d~Y~iLgv~~~--as~~eIkkaYr~l~~~~HPDk~~~~---~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~~~~~ 146 (206)
.|||++||||+. .+..+|++.|+.+.+.+|||+.... ++..+.+....||+||.+|+||.+|+.|-..+..|+..
T Consensus 2 ~nyF~lf~lp~~F~iD~~~L~~~y~~Lq~~~HPD~f~~~~~~eq~~a~~~ss~iN~AY~tLkdPl~RA~YLL~L~~g~~~ 81 (173)
T PRK01773 2 NNPFALFDLPVDFQLDNALLSERYLALQKSLHPDNFANSSAQEQRLAMQKSAEVNDALQILKDPILRAEAIIALNTGEQQ 81 (173)
T ss_pred CChHHhcCCCCCCCCCHHHHHHHHHHHHHHhCcCcccCCCHHHHHHHHHHHHHHHHHHHHHCChHHHHHHHHHhccCCCC
Confidence 589999999998 8899999999999999999997443 33456778999999999999999999999887766654
Q ss_pred hhhhhcccCchhhhhhHHHHHHH
Q 028609 147 AFSARRRQQNDDFQVRSEWRNRW 169 (206)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~ 169 (206)
........+....+.+++|++..
T Consensus 82 ~~e~~~~~d~~fLme~ME~rE~l 104 (173)
T PRK01773 82 NLEEKSTQDMAFLMQQMEWREQL 104 (173)
T ss_pred CcccccCCCHHHHHHHHHHHHHH
Confidence 33333444556778899998865
No 53
>KOG0720 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=1.5e-14 Score=130.03 Aligned_cols=107 Identities=27% Similarity=0.360 Sum_probs=83.1
Q ss_pred cccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhhhcccch
Q 028609 68 ESKELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMGLHLA 147 (206)
Q Consensus 68 ~~~~~d~Y~iLgv~~~as~~eIkkaYr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~~~~~~ 147 (206)
+.+..|+|.+|||+.+++.++|||.||++|...|||||.. +.|.|.|+.++.||++|+|+.+|..||..+.......
T Consensus 231 e~~~~daYsvlGl~~d~sd~~lKk~Yrk~A~LVhPDKn~~---~~A~Eafk~Lq~Afevig~~~kR~eYd~e~~kene~~ 307 (490)
T KOG0720|consen 231 ELNILDAYSALGLPSDCSDADLKKNYRKKAMLVHPDKNMI---PRAEEAFKKLQVAFEVIGDSVKRKEYDLELKKENELH 307 (490)
T ss_pred hhcCCCchhhcCCCCCCCHHHHHHHHHhhceEeCCCccCC---hhHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHH
Confidence 4447899999999999999999999999999999999985 4777899999999999999999999999875422210
Q ss_pred hhhhcccCchhhhhhHHHHHHHHHHHHHHHHHhcCcCCCCcc
Q 028609 148 FSARRRQQNDDFQVRSEWRNRWQSQLSELKRRSMNKDAGGNI 189 (206)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~el~r~~~~~~~~g~~ 189 (206)
......|. ..+.+++|.++.++=...++-.
T Consensus 308 -----------~~~~~~~~-~~~~~~eEA~ntI~CskC~n~H 337 (490)
T KOG0720|consen 308 -----------RQVISSLN-DLQKAVEEARNTIFCSKCGNTH 337 (490)
T ss_pred -----------HHHHHHHH-HHHHHHHHHHhheehhhhcCcc
Confidence 01112222 4556788888888765455443
No 54
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.50 E-value=1.6e-14 Score=126.78 Aligned_cols=73 Identities=33% Similarity=0.602 Sum_probs=66.9
Q ss_pred cccccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCcc-HHHHHHHHHHHHHHHHHcCChhHHHHHHH
Q 028609 66 VDESKELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDR-VEEYTQRFIRVQEAYETLSDPGLRALYDR 138 (206)
Q Consensus 66 ~~~~~~~d~Y~iLgv~~~as~~eIkkaYr~l~~~~HPDk~~~~~-~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~ 138 (206)
......+|||.||||.++|+..||.||||+++.+||||...+.+ +..|+.+|..|..|-+||+||++|..||.
T Consensus 388 kkqs~kRDYYKILGVkRnAsKqEI~KAYRKlAqkWHPDNFqdEeEKKkAEKKFIDIAAAKEVLsd~EkRrqFDn 461 (504)
T KOG0624|consen 388 KKQSGKRDYYKILGVKRNASKQEITKAYRKLAQKWHPDNFQDEEEKKKAEKKFIDIAAAKEVLSDPEKRRQFDN 461 (504)
T ss_pred HHHhccchHHHHhhhcccccHHHHHHHHHHHHHhcCCccccCHHHHHHHHHhhhhHHHHHHhhcCHHHHhhccC
Confidence 34567899999999999999999999999999999999986654 67889999999999999999999999996
No 55
>KOG0714 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=4e-14 Score=120.34 Aligned_cols=74 Identities=43% Similarity=0.711 Sum_probs=67.5
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhhhccc
Q 028609 71 ELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMGLH 145 (206)
Q Consensus 71 ~~d~Y~iLgv~~~as~~eIkkaYr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~~~~ 145 (206)
..|||.||||.++|+.++|++||+++++.+|||+++.. ...+..+|++|.+||+||+||.+|..||.++..+..
T Consensus 2 ~~d~~~~l~i~~~as~~~i~ka~~~~a~~~hpdk~~~~-~~~~~~~~~~~~ea~~~ls~~~kr~~~d~~~~~~~~ 75 (306)
T KOG0714|consen 2 GKDYYKILGIARSASEEDIKKAYRKLALKYHPDKNPSP-KEVAEAKFKEIAEAYEVLSDPKKRKIYDQYGEEGLK 75 (306)
T ss_pred cccHHHHhCccccccHHHHHHHHHHHHHhhCCCCCCCc-hhhHHHHHhhhhccccccCCHHHhhhccccCccccc
Confidence 46899999999999999999999999999999998877 667777999999999999999999999999875544
No 56
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB. This model describes the small subunit, Hsc20 (20K heat shock cognate protein) of a pair of proteins Hsc66-Hsc20, related to the DnaK-DnaJ heat shock proteins, which also serve as molecular chaperones. Hsc20, unlike DnaJ, appears not to have chaperone activity on its own, but to act solely as a regulatory subunit for Hsc66 (i.e., to be a co-chaperone). The gene for Hsc20 in E. coli, hscB, is not induced by heat shock.
Probab=99.45 E-value=4.5e-13 Score=106.92 Aligned_cols=85 Identities=26% Similarity=0.383 Sum_probs=67.4
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCCCc---cHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhhhcccchhhhhcccCchhhh
Q 028609 84 VSLVEIKQAYKQMARKYHPDVSPPD---RVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMGLHLAFSARRRQQNDDFQ 160 (206)
Q Consensus 84 as~~eIkkaYr~l~~~~HPDk~~~~---~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~~~~~~~~~~~~~~~~~~~ 160 (206)
.+..+|+++|+++++++|||+.... .+..+.+.|..||+||++|+||.+|+.|+..+. |+..........+....+
T Consensus 3 iD~~~L~~~yr~lq~~~HPD~~~~~~~~~~~~a~~~s~~iN~AY~~L~~p~~Ra~ylL~l~-g~~~~~e~~~~~d~~fLm 81 (157)
T TIGR00714 3 LDTQALSLRYQDLQRQYHPDKFASGSAQEQLAAVQQSTTLNQAYQTLKDPLMRAEYMLSLH-GIDLASEQHSVRDTAFLM 81 (157)
T ss_pred CCHHHHHHHHHHHHHHHCcCCCCCCChhhhHHHHHHHHHHHHHHHHhCChhhhHHHHHHhc-CCCCCcccCCCCCHHHHH
Confidence 5788999999999999999986443 334577899999999999999999999999887 665443333334455778
Q ss_pred hhHHHHHHH
Q 028609 161 VRSEWRNRW 169 (206)
Q Consensus 161 ~~~~~~~~~ 169 (206)
.+++|++..
T Consensus 82 e~Me~rE~l 90 (157)
T TIGR00714 82 EQLELREEL 90 (157)
T ss_pred HHHHHHHHH
Confidence 889998765
No 57
>KOG0722 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=1.2e-13 Score=116.32 Aligned_cols=69 Identities=36% Similarity=0.613 Sum_probs=63.4
Q ss_pred cccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhh
Q 028609 70 KELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLS 141 (206)
Q Consensus 70 ~~~d~Y~iLgv~~~as~~eIkkaYr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~ 141 (206)
...|.|+||||.++++..+|.+|||+|++++|||++.+. ++.+.|..|..||++|.|.+.|..||-.+.
T Consensus 31 G~enCYdVLgV~Rea~KseIakAYRqLARrhHPDr~r~~---e~k~~F~~iAtayeilkd~e~rt~ydyald 99 (329)
T KOG0722|consen 31 GAENCYDVLGVAREANKSEIAKAYRQLARRHHPDRNRDP---ESKKLFVKIATAYEILKDNETRTQYDYALD 99 (329)
T ss_pred cchhHHHHhhhhhhccHHHHHHHHHHHHHHhCCcccCCc---hhhhhhhhhhcccccccchhhHHhHHHHhc
Confidence 457999999999999999999999999999999999886 445799999999999999999999998764
No 58
>PHA02624 large T antigen; Provisional
Probab=99.40 E-value=3.2e-13 Score=126.53 Aligned_cols=87 Identities=23% Similarity=0.434 Sum_probs=68.6
Q ss_pred cccccccccCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHcCChhHHHHHH--Hhhhhccc
Q 028609 70 KELSFYDLLGIPESV--SLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYD--RDLSMGLH 145 (206)
Q Consensus 70 ~~~d~Y~iLgv~~~a--s~~eIkkaYr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD--~~~~~~~~ 145 (206)
+..++|+||||+++| +.++||+|||+++++||||++++ .++|++|++||++|+|+.++..|. ..-..|+.
T Consensus 9 e~~elyelLGL~~~A~gs~~eIKkAYRkLAkkyHPDKgGd------eekfk~Ln~AYevL~d~~k~~r~~fd~~~~~~v~ 82 (647)
T PHA02624 9 ESKELMDLLGLPMAAWGNLPLMRKAYLRKCKEYHPDKGGD------EEKMKRLNSLYKKLQEGVKSARQSFGTQDSSEIP 82 (647)
T ss_pred HHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHHHCcCCCCc------HHHHHHHHHHHHHHhcHHHhhhcccccccccCCC
Confidence 356899999999999 99999999999999999999743 358999999999999999999993 22101110
Q ss_pred chhhhhcccCchhhhhhHHHHHHHHHHHHH
Q 028609 146 LAFSARRRQQNDDFQVRSEWRNRWQSQLSE 175 (206)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e 175 (206)
+ .+..+|.+.|+.....
T Consensus 83 ------------~-~~~~~w~~ww~~f~~k 99 (647)
T PHA02624 83 ------------T-YGTPEWEQWWEEFNEK 99 (647)
T ss_pred ------------C-CccccHHHHHHHhhhh
Confidence 0 1456788888877654
No 59
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.38 E-value=2.8e-13 Score=120.96 Aligned_cols=74 Identities=38% Similarity=0.569 Sum_probs=67.6
Q ss_pred ccccccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHcCChhHHHHHHHh
Q 028609 65 VVDESKELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRD 139 (206)
Q Consensus 65 ~~~~~~~~d~Y~iLgv~~~as~~eIkkaYr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~ 139 (206)
..+.++..|||.||||.++++..+||++|+++++.+|||++... +.+++.+|++|.+||.||+||.+|..||..
T Consensus 366 aLkkSkRkd~ykilGi~~~as~~eikkayrk~AL~~Hpd~~ags-q~eaE~kFkevgeAy~il~d~~kr~r~dsg 439 (486)
T KOG0550|consen 366 ALKKSKRKDWYKILGISRNASDDEIKKAYRKLALVHHPDKNAGS-QKEAEAKFKEVGEAYTILSDPMKRVRFDSG 439 (486)
T ss_pred HHHHhhhhhHHHHhhhhhhcccchhhhHHHHHHHHhCCCcCcch-hHHHHHHHHHHHHHHHHhcCHHHHhhcccc
Confidence 34567789999999999999999999999999999999999776 467889999999999999999999999963
No 60
>PRK09430 djlA Dna-J like membrane chaperone protein; Provisional
Probab=99.35 E-value=8e-13 Score=113.86 Aligned_cols=60 Identities=30% Similarity=0.444 Sum_probs=52.8
Q ss_pred cccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC-----ccHHHHHHHHHHHHHHHHHcCC
Q 028609 70 KELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPP-----DRVEEYTQRFIRVQEAYETLSD 129 (206)
Q Consensus 70 ~~~d~Y~iLgv~~~as~~eIkkaYr~l~~~~HPDk~~~-----~~~~~a~~~f~~I~~Ay~vLsd 129 (206)
...++|+||||+++++.++||++||+|+++||||+... ...+.++++|+.|++||++|+.
T Consensus 198 ~~~~ay~vLgv~~~as~~eIk~aYr~L~~~~HPDk~~~~g~~~~~~~~a~ek~~~I~~AYe~L~~ 262 (267)
T PRK09430 198 TLEDAYKVLGVSESDDDQEIKRAYRKLMSEHHPDKLVAKGLPPEMMEMAKEKAQEIQAAYELIKK 262 (267)
T ss_pred cHHhHHHHcCCCCCCCHHHHHHHHHHHHHHhCcCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHH
Confidence 44799999999999999999999999999999999632 2346789999999999999974
No 61
>PTZ00100 DnaJ chaperone protein; Provisional
Probab=99.35 E-value=1.1e-12 Score=99.23 Aligned_cols=52 Identities=31% Similarity=0.360 Sum_probs=46.6
Q ss_pred ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHcC
Q 028609 71 ELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLS 128 (206)
Q Consensus 71 ~~d~Y~iLgv~~~as~~eIkkaYr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLs 128 (206)
..++|+||||+++++.++||++|+++++++|||+.+. .+.|++|++||++|.
T Consensus 64 ~~eAy~ILGv~~~As~~eIkkaYRrLa~~~HPDkgGs------~~~~~kIneAyevL~ 115 (116)
T PTZ00100 64 KSEAYKILNISPTASKERIREAHKQLMLRNHPDNGGS------TYIASKVNEAKDLLL 115 (116)
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHHhCCCCCCC------HHHHHHHHHHHHHHh
Confidence 3689999999999999999999999999999998643 246899999999985
No 62
>COG5407 SEC63 Preprotein translocase subunit Sec63 [Intracellular trafficking and secretion]
Probab=99.29 E-value=3.3e-12 Score=114.96 Aligned_cols=74 Identities=30% Similarity=0.561 Sum_probs=67.9
Q ss_pred ccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC---ccHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhhh
Q 028609 69 SKELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPP---DRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSM 142 (206)
Q Consensus 69 ~~~~d~Y~iLgv~~~as~~eIkkaYr~l~~~~HPDk~~~---~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~ 142 (206)
.+..|+||||||..+++..+||++||+|+.+|||||.++ ..+++.++.++.|++||..|+|...|..|-.+|.-
T Consensus 95 ~~~fDPyEILGI~~~ts~rdik~~yr~Ls~KfhpdK~~~mvn~~rse~Ee~y~~ItkAY~~lTd~k~renyl~yGtP 171 (610)
T COG5407 95 RRGFDPYEILGIDQDTSERDIKKRYRMLSMKFHPDKAPPMVNELRSEYEEKYKTITKAYGLLTDKKRRENYLNYGTP 171 (610)
T ss_pred HcCCChHHhhcccCCCcHHHHHHHHHhheeecChhhcCCCChhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCCC
Confidence 355799999999999999999999999999999999876 67788899999999999999999999999988653
No 63
>KOG1150 consensus Predicted molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=2e-11 Score=99.77 Aligned_cols=69 Identities=28% Similarity=0.409 Sum_probs=61.5
Q ss_pred cccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHcCChhHHHHHHHh
Q 028609 70 KELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRD 139 (206)
Q Consensus 70 ~~~d~Y~iLgv~~~as~~eIkkaYr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~ 139 (206)
=+.|+|+||.|.|+.+.++||+.||+|++.+|||||+++. +.|...|..|.+||.+|-|+..|..-+.-
T Consensus 51 fnLNpfeVLqIdpev~~edikkryRklSilVHPDKN~Dd~-~rAqkAFdivkKA~k~l~n~~~rkr~~~~ 119 (250)
T KOG1150|consen 51 FNLNPFEVLQIDPEVTDEDIKKRYRKLSILVHPDKNPDDA-ERAQKAFDIVKKAYKLLENDKIRKRCLDV 119 (250)
T ss_pred cccChHHHHhcCCCCCHHHHHHHHHhhheeecCCCCcccH-HHHHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 4679999999999999999999999999999999998763 57788999999999999999977665543
No 64
>COG5269 ZUO1 Ribosome-associated chaperone zuotin [Translation, ribosomal structure and biogenesis / Posttranslational modification, protein turnover, chaperones]
Probab=99.00 E-value=3.9e-10 Score=96.10 Aligned_cols=75 Identities=31% Similarity=0.423 Sum_probs=62.8
Q ss_pred cccccccccccccCCCCC---CCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHcCChhHHHHHHHhh
Q 028609 66 VDESKELSFYDLLGIPES---VSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDPGLRALYDRDL 140 (206)
Q Consensus 66 ~~~~~~~d~Y~iLgv~~~---as~~eIkkaYr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~ 140 (206)
...++..|+|.+|||+.- ++..+|.++.++.+.+||||+..........+.|+.|++||+||+|+.+|..||..-
T Consensus 37 ~k~Wk~~DlYa~lgLskyR~ka~~~qi~kah~kkv~kyHPDk~aa~g~~~~d~fFk~iqkA~evL~D~~~R~qyDS~d 114 (379)
T COG5269 37 FKNWKKVDLYALLGLSKYRTKAIPPQILKAHKKKVYKYHPDKTAAGGNKGCDEFFKLIQKAREVLGDRKLRLQYDSND 114 (379)
T ss_pred hhhhhhhhHHHHhchHhhhcCCCcHHHHHHHHHHHHHhCccchhccCCCCcHHHHHHHHHHHHHhccHHHHhhccccc
Confidence 457888999999999864 889999999999999999999632221234568999999999999999999999643
No 65
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=98.35 E-value=5e-07 Score=88.83 Aligned_cols=54 Identities=33% Similarity=0.491 Sum_probs=46.4
Q ss_pred cccccccccCCCCC----CCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHcC
Q 028609 70 KELSFYDLLGIPES----VSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLS 128 (206)
Q Consensus 70 ~~~d~Y~iLgv~~~----as~~eIkkaYr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLs 128 (206)
...+-|+||.|+-+ ...+.||++|++|+.+||||||+. ..++|..+++||+.|+
T Consensus 1279 S~d~A~eiL~i~l~n~~hD~~~KirrqY~kLA~kYHPDKNPE-----GRemFe~VnKAYE~L~ 1336 (2235)
T KOG1789|consen 1279 SVDLAREILSVDLTNEEHDKPAKIRRQYYKLAAKYHPDKNPE-----GREMFERVNKAYELLS 1336 (2235)
T ss_pred chHHHHHHhccccCCCCcccHHHHHHHHHHHHHHhCCCCCch-----HHHHHHHHHHHHHHHH
Confidence 34577999999865 345789999999999999999974 4579999999999998
No 66
>KOG0568 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.34 E-value=5.5e-07 Score=75.57 Aligned_cols=58 Identities=28% Similarity=0.633 Sum_probs=49.8
Q ss_pred ccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHH-HcCC
Q 028609 69 SKELSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYE-TLSD 129 (206)
Q Consensus 69 ~~~~d~Y~iLgv~~~as~~eIkkaYr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~-vLsd 129 (206)
.+-..||.||||..+|+.++|+.+|..|++++|||...+. ...+.|.+|.+||. ||..
T Consensus 44 e~~~e~fril~v~e~~~adevr~af~~lakq~hpdsgs~~---adaa~f~qideafrkvlq~ 102 (342)
T KOG0568|consen 44 EKIMECFRILGVEEGADADEVREAFHDLAKQVHPDSGSEE---ADAARFIQIDEAFRKVLQE 102 (342)
T ss_pred HHHHHHHHHhcccccCchhHHHHHHHHHHHHcCCCCCCcc---ccHHHHHHHHHHHHHHHHH
Confidence 3456899999999999999999999999999999987654 33468999999998 7754
No 67
>KOG0723 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.13 E-value=4.4e-06 Score=61.98 Aligned_cols=51 Identities=24% Similarity=0.305 Sum_probs=44.4
Q ss_pred ccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHcCC
Q 028609 73 SFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSD 129 (206)
Q Consensus 73 d~Y~iLgv~~~as~~eIkkaYr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsd 129 (206)
.--.||||.++++.+.||+++|++....|||+.+.+-. -..||+|+++|..
T Consensus 57 EA~lIL~v~~s~~k~KikeaHrriM~~NHPD~GGSPYl------AsKINEAKdlLe~ 107 (112)
T KOG0723|consen 57 EAALILGVTPSLDKDKIKEAHRRIMLANHPDRGGSPYL------ASKINEAKDLLEG 107 (112)
T ss_pred HHHHHhCCCccccHHHHHHHHHHHHHcCCCcCCCCHHH------HHHHHHHHHHHhc
Confidence 34579999999999999999999999999999987632 4589999999964
No 68
>KOG3192 consensus Mitochondrial J-type chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=97.83 E-value=2.7e-05 Score=61.65 Aligned_cols=73 Identities=27% Similarity=0.502 Sum_probs=57.7
Q ss_pred ccccccccccCCCCC--CCHHHHHHHHHHHHHHhCCCCCCC---ccHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhh
Q 028609 69 SKELSFYDLLGIPES--VSLVEIKQAYKQMARKYHPDVSPP---DRVEEYTQRFIRVQEAYETLSDPGLRALYDRDLS 141 (206)
Q Consensus 69 ~~~~d~Y~iLgv~~~--as~~eIkkaYr~l~~~~HPDk~~~---~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~ 141 (206)
....+||.++|.... ..++.++.-|.-..+++|||+... .....|.+....+++||.+|.||.+|+.|-..+.
T Consensus 5 ~~~~~ff~~Fg~e~~~~~~p~~l~~~~~~~skkL~~d~~~~~~~~~~d~a~eqSa~lnkAY~TLk~pL~RA~Yilkl~ 82 (168)
T KOG3192|consen 5 GSPSRFFDIFGMELSFKIDPDKLKEKYTDISKKLHPDRPGLSFAGDTDQASEQSAELNKAYDTLKDPLARARYLLKLK 82 (168)
T ss_pred chHHHHHHHhccccCCCCCcchhhHHHHHHHHhhCcccccccccccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 345789999987655 677778878999999999998422 1123567889999999999999999999976543
No 69
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.56 E-value=7.9e-05 Score=60.33 Aligned_cols=73 Identities=36% Similarity=0.533 Sum_probs=58.6
Q ss_pred ccccccCCCCCC--CHHHHHHHHHHHHHHhCCCCCCCc---cHHHHHHHHHHHHHHHHHcCChhHHHHHHHhhhhccc
Q 028609 73 SFYDLLGIPESV--SLVEIKQAYKQMARKYHPDVSPPD---RVEEYTQRFIRVQEAYETLSDPGLRALYDRDLSMGLH 145 (206)
Q Consensus 73 d~Y~iLgv~~~a--s~~eIkkaYr~l~~~~HPDk~~~~---~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~~~~~~ 145 (206)
|++.++|+++.+ ..+.++..|+.+.+.+|||+.... ....+.+.+..++.||.+|.||.+|+.|-..+..|..
T Consensus 2 ~~~~~~~~~~~f~~~~~~l~~~~~~~~~~~~~dr~~~~~~~~~~~~l~~~~~~~~a~~tLk~~l~ra~~~lal~~g~~ 79 (174)
T COG1076 2 DGFVLFGLPRAFQIDLDALKLQYRELQRAYHPDRFGKASEAEQRKALQQSAEVNPAYQTLKDPLLRAEYLLALADGLD 79 (174)
T ss_pred CcccccccHHHHHHHHhHhhhhHHHHHHhhCcccccccchHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccccc
Confidence 466777777764 456699999999999999986432 2233567899999999999999999999888876654
No 70
>COG1076 DjlA DnaJ-domain-containing proteins 1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.92 E-value=0.00076 Score=54.58 Aligned_cols=56 Identities=27% Similarity=0.492 Sum_probs=47.5
Q ss_pred cccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCC-----CccHHHHHHHHHHHHHHHHHc
Q 028609 72 LSFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSP-----PDRVEEYTQRFIRVQEAYETL 127 (206)
Q Consensus 72 ~d~Y~iLgv~~~as~~eIkkaYr~l~~~~HPDk~~-----~~~~~~a~~~f~~I~~Ay~vL 127 (206)
.+.|.+||+...+...+|+++|+++....|||+.. ..-.+.+.++++.|++||+.+
T Consensus 113 ~~~l~~l~~~~~~~~~~i~~~~r~l~~e~~~d~a~~~~~~~e~~~~~~~~~~~i~~a~~~~ 173 (174)
T COG1076 113 EDALKVLGVEIKADQDAIKKAYRKLLSEQHPDKAAAKGLKLEFIEKLKEKLQEIQEAYEDI 173 (174)
T ss_pred hhHHHHhcCchhhhHHHHHHHHHHHHHhcCHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhc
Confidence 68899999999999999999999999999999732 222356778999999999754
No 71
>KOG0431 consensus Auxilin-like protein and related proteins containing DnaJ domain [General function prediction only]
Probab=96.61 E-value=0.0028 Score=58.63 Aligned_cols=61 Identities=25% Similarity=0.342 Sum_probs=41.9
Q ss_pred ccccccccccccC----------------CCCCCCHHHHHHHHHHHHHHhCCCCCCCc-----cHHHHHHHHHHHHHHHH
Q 028609 67 DESKELSFYDLLG----------------IPESVSLVEIKQAYKQMARKYHPDVSPPD-----RVEEYTQRFIRVQEAYE 125 (206)
Q Consensus 67 ~~~~~~d~Y~iLg----------------v~~~as~~eIkkaYr~l~~~~HPDk~~~~-----~~~~a~~~f~~I~~Ay~ 125 (206)
..++..|.-.+|. |.--++.++|||+||+..+.+||||.+.. .+-.|++.|..+++|++
T Consensus 367 ~~GKE~NIRALLSTLh~VLW~es~WqpVsltDLVtp~~VKKaYrKA~L~VHPDKlqq~gas~~qK~Iaekvfd~l~eawn 446 (453)
T KOG0431|consen 367 SEGKEGNIRALLSTLHYVLWPESGWQPVSLTDLVTPAQVKKAYRKAVLCVHPDKLQQKGASLEQKYIAEKVFDALSEAWN 446 (453)
T ss_pred cccccccHHHHHHHHhHhhcCccCcccCchhhccCHHHHHHHHHhhhheeCcccccCCcccHHHHHHHHHHHHHHHHHHH
Confidence 3566666666663 22237899999999999999999996543 12235566777777766
Q ss_pred Hc
Q 028609 126 TL 127 (206)
Q Consensus 126 vL 127 (206)
..
T Consensus 447 ~f 448 (453)
T KOG0431|consen 447 KF 448 (453)
T ss_pred hh
Confidence 43
No 72
>PF03656 Pam16: Pam16; InterPro: IPR005341 The Pam16 protein is the fifth essential subunit of the pre-sequence translocase-associated protein import motor (PAM) []. In Saccharomyces cerevisiae (Baker's yeast), Pam16 is required for preprotein translocation into the matrix, but not for protein insertion into the inner membrane [].; PDB: 2GUZ_J.
Probab=94.09 E-value=0.094 Score=40.49 Aligned_cols=52 Identities=23% Similarity=0.254 Sum_probs=37.1
Q ss_pred ccccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHcCCh
Q 028609 73 SFYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLSDP 130 (206)
Q Consensus 73 d~Y~iLgv~~~as~~eIkkaYr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLsdp 130 (206)
.-..||||++..+.++|.+.|.+|-...+|++.+..- .-..|..|.+.|..+
T Consensus 59 EA~~ILnv~~~~~~eeI~k~y~~Lf~~Nd~~kGGSfY------LQSKV~rAKErl~~E 110 (127)
T PF03656_consen 59 EARQILNVKEELSREEIQKRYKHLFKANDPSKGGSFY------LQSKVFRAKERLEQE 110 (127)
T ss_dssp HHHHHHT--G--SHHHHHHHHHHHHHHT-CCCTS-HH------HHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCccCHHHHHHHHHHHHhccCCCcCCCHH------HHHHHHHHHHHHHHH
Confidence 4579999999999999999999999999999886542 234688888877533
No 73
>PF13446 RPT: A repeated domain in UCH-protein
Probab=90.40 E-value=0.81 Score=30.36 Aligned_cols=26 Identities=27% Similarity=0.376 Sum_probs=24.0
Q ss_pred ccccccCCCCCCCHHHHHHHHHHHHH
Q 028609 73 SFYDLLGIPESVSLVEIKQAYKQMAR 98 (206)
Q Consensus 73 d~Y~iLgv~~~as~~eIkkaYr~l~~ 98 (206)
+-|++|||+++.+.+.|-.+|.....
T Consensus 6 ~Ay~~Lgi~~~~~Dd~Ii~~f~~~~~ 31 (62)
T PF13446_consen 6 EAYEILGIDEDTDDDFIISAFQSKVN 31 (62)
T ss_pred HHHHHhCcCCCCCHHHHHHHHHHHHH
Confidence 56999999999999999999998887
No 74
>KOG0724 consensus Zuotin and related molecular chaperones (DnaJ superfamily), contains DNA-binding domains [Posttranslational modification, protein turnover, chaperones]
Probab=86.22 E-value=0.78 Score=40.53 Aligned_cols=57 Identities=26% Similarity=0.247 Sum_probs=42.7
Q ss_pred CCHHHHHHHHHHHHHHhCCCCCCC--ccHHHHHHHHHHHHHHHHHcCChhHHHHHHHhh
Q 028609 84 VSLVEIKQAYKQMARKYHPDVSPP--DRVEEYTQRFIRVQEAYETLSDPGLRALYDRDL 140 (206)
Q Consensus 84 as~~eIkkaYr~l~~~~HPDk~~~--~~~~~a~~~f~~I~~Ay~vLsdp~~R~~YD~~~ 140 (206)
++..+|..+|+..++..||++... .......+.|+.|.+||.||.+...|...|.+.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~i~ka~~i~~~~~~~~t~~~~~ 62 (335)
T KOG0724|consen 4 ASEDELRLAYREMALKSHPEKKSFYEKLSLWTEEEFKKIEKALAILDDDEPRRTPDSWD 62 (335)
T ss_pred ccHHHHHHHHHHHhhhcCcHHHHHHHHhhhhHHHHHHHHHHHHHHHhccccccchhhhh
Confidence 567889999999999999998742 111133467999999999999876655665543
No 75
>PF14687 DUF4460: Domain of unknown function (DUF4460)
Probab=78.98 E-value=4.5 Score=30.44 Aligned_cols=49 Identities=12% Similarity=0.211 Sum_probs=34.4
Q ss_pred CCCHHHHHHHHHHHHHHhCCCCCCC--ccHHHHHHHHHHHHHHHHHcCChh
Q 028609 83 SVSLVEIKQAYKQMARKYHPDVSPP--DRVEEYTQRFIRVQEAYETLSDPG 131 (206)
Q Consensus 83 ~as~~eIkkaYr~l~~~~HPDk~~~--~~~~~a~~~f~~I~~Ay~vLsdp~ 131 (206)
..+..+++.+.|.+-+.+|||.... ..+..-.+-++.++.-.+.|..+.
T Consensus 5 ~~~~~~l~~aLr~Fy~~VHPDlF~~~P~~k~~Ne~SLk~Ln~~Ld~l~~~~ 55 (112)
T PF14687_consen 5 NLSSPDLRSALRPFYFAVHPDLFGQHPEEKQVNEESLKLLNSYLDSLKKRK 55 (112)
T ss_pred hhhhHHHHHHHHHHHHHhCCcccccChHHHHhhHHHHHHHHHHHHHHhccC
Confidence 4567789999999999999996533 233334456777777667766543
No 76
>PF11833 DUF3353: Protein of unknown function (DUF3353); InterPro: IPR021788 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 205 to 258 amino acids in length.
Probab=76.74 E-value=3.8 Score=33.79 Aligned_cols=38 Identities=24% Similarity=0.380 Sum_probs=29.2
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHcC
Q 028609 81 PESVSLVEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYETLS 128 (206)
Q Consensus 81 ~~~as~~eIkkaYr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~vLs 128 (206)
+++|+.+||.+|+.++..+|--|. +.-..|-.||+.+.
T Consensus 1 S~~ASfeEIq~Arn~ll~~y~gd~----------~~~~~IEaAYD~IL 38 (194)
T PF11833_consen 1 SEDASFEEIQAARNRLLAQYAGDE----------KSREAIEAAYDAIL 38 (194)
T ss_pred CCCCCHHHHHHHHHHHHHHhcCCH----------HHHHHHHHHHHHHH
Confidence 478999999999999999993221 23557888998764
No 77
>COG5552 Uncharacterized conserved protein [Function unknown]
Probab=51.37 E-value=64 Score=22.65 Aligned_cols=29 Identities=24% Similarity=0.373 Sum_probs=24.4
Q ss_pred ccccccCCCCCCCHHHHHHHHHHHHHHhC
Q 028609 73 SFYDLLGIPESVSLVEIKQAYKQMARKYH 101 (206)
Q Consensus 73 d~Y~iLgv~~~as~~eIkkaYr~l~~~~H 101 (206)
|.-+++|+.+-++..||+.+-++.++++.
T Consensus 4 NIk~LfnfdPPAT~~EvrdAAlQfVRKlS 32 (88)
T COG5552 4 NIKELFNFDPPATPVEVRDAALQFVRKLS 32 (88)
T ss_pred chHHHhCCCCCCCcHHHHHHHHHHHHHhc
Confidence 44578899999999999999888877763
No 78
>PF07709 SRR: Seven Residue Repeat; InterPro: IPR011714 This repeat is found in some Plasmodium and Theileria proteins.
Probab=49.07 E-value=12 Score=17.52 Aligned_cols=13 Identities=54% Similarity=0.910 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHcC
Q 028609 116 RFIRVQEAYETLS 128 (206)
Q Consensus 116 ~f~~I~~Ay~vLs 128 (206)
.|..+..||+.|+
T Consensus 2 ~~~~V~~aY~~l~ 14 (14)
T PF07709_consen 2 KFEKVKNAYEQLS 14 (14)
T ss_pred cHHHHHHHHHhcC
Confidence 4777888888774
No 79
>KOG3442 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.02 E-value=45 Score=25.72 Aligned_cols=34 Identities=15% Similarity=0.244 Sum_probs=29.7
Q ss_pred cccccCCCCCCCHHHHHHHHHHHHHHhCCCCCCC
Q 028609 74 FYDLLGIPESVSLVEIKQAYKQMARKYHPDVSPP 107 (206)
Q Consensus 74 ~Y~iLgv~~~as~~eIkkaYr~l~~~~HPDk~~~ 107 (206)
--.||+|....+.++|.+.|..|-....+.|.+.
T Consensus 61 a~qILnV~~~ln~eei~k~yehLFevNdkskGGS 94 (132)
T KOG3442|consen 61 AQQILNVKEPLNREEIEKRYEHLFEVNDKSKGGS 94 (132)
T ss_pred HhhHhCCCCCCCHHHHHHHHHHHHhccCcccCcc
Confidence 4689999999999999999999999887777654
No 80
>PF12434 Malate_DH: Malate dehydrogenase enzyme
Probab=33.09 E-value=51 Score=18.53 Aligned_cols=17 Identities=24% Similarity=0.360 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHhCC
Q 028609 86 LVEIKQAYKQMARKYHP 102 (206)
Q Consensus 86 ~~eIkkaYr~l~~~~HP 102 (206)
.++.+.+.|+.++.||-
T Consensus 10 ~~~~r~~lR~AALeYHe 26 (28)
T PF12434_consen 10 KEDKRAQLRQAALEYHE 26 (28)
T ss_pred hHHHHHHHHHHHHHhcc
Confidence 46788999999999983
No 81
>PRK14102 nifW nitrogenase stabilizing/protective protein; Provisional
Probab=32.43 E-value=1.4e+02 Score=22.19 Aligned_cols=57 Identities=12% Similarity=0.351 Sum_probs=32.2
Q ss_pred cccccccccCCCCCCCH-----HHHHHHHHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHH
Q 028609 70 KELSFYDLLGIPESVSL-----VEIKQAYKQMARKYHPDVSPPDRVEEYTQRFIRVQEAYET 126 (206)
Q Consensus 70 ~~~d~Y~iLgv~~~as~-----~eIkkaYr~l~~~~HPDk~~~~~~~~a~~~f~~I~~Ay~v 126 (206)
...+|++.|||+-+-.. =-|=|.|.......+.+....++.+.....=..+.+||+.
T Consensus 13 sAEdFf~ff~v~YDp~vvnV~RLHILkrf~qyl~~~~~~~~~~~e~~~~~~yr~~L~~AY~d 74 (105)
T PRK14102 13 DAEDYFQFFELPYDPTVVNVNRLHILKQFSQLIAEIDANFPDLSEEEKLEKYQLALEEAYQV 74 (105)
T ss_pred cHHHHHHHhCCCCCcchhhHHHHHHHHHHHHHHHHhccccCCCCHHHHHHHHHHHHHHHHHH
Confidence 45689999999977433 3477778877776554432222212112222345566654
No 82
>PF03206 NifW: Nitrogen fixation protein NifW; InterPro: IPR004893 Nitrogenase is a complex metalloenzyme composed of two proteins designated the Fe-protein and the MoFe-protein. Apart from these two proteins, a number of accessory proteins are essential for the maturation and assembly of nitrogenase. Even though experimental evidence suggests that these accessory proteins are required for nitrogenase activity, the exact roles played by many of these proteins in the functions of nitrogenase are unclear []. Using yeast two-hybrid screening it has been shown that NifW can interact with itself as well as NifZ. ; GO: 0009399 nitrogen fixation
Probab=25.24 E-value=2.2e+02 Score=21.17 Aligned_cols=35 Identities=23% Similarity=0.389 Sum_probs=26.1
Q ss_pred ccccccccccCCCCCCC-----HHHHHHHHHHHHHHhCCC
Q 028609 69 SKELSFYDLLGIPESVS-----LVEIKQAYKQMARKYHPD 103 (206)
Q Consensus 69 ~~~~d~Y~iLgv~~~as-----~~eIkkaYr~l~~~~HPD 103 (206)
....+|++.|||+-+.. .=-|=+.|.......++.
T Consensus 12 ~sAEdFf~fF~V~YDp~vv~V~RLHILkrF~~yL~~~~~~ 51 (105)
T PF03206_consen 12 SSAEDFFDFFGVPYDPKVVNVNRLHILKRFGQYLRAADFA 51 (105)
T ss_pred cCHHHHHHHhCCCcchhHHHHhhHHHHHHHHHHHHhccCC
Confidence 34568999999998743 344888888888888664
No 83
>PF08447 PAS_3: PAS fold; InterPro: IPR013655 The PAS fold corresponds to the structural domain that has previously been defined as PAS and PAC motifs []. The PAS fold appears in archaea, eubacteria and eukarya. The PAS domain contains a sensory box, or S-box domain that occupies the central portion of the PAS domain but is more widely distributed. It is often tandemly repeated. Known prosthetic groups bound in the S-box domain include haem in the oxygen sensor FixL [], FAD in the redox potential sensor NifL [], and a 4-hydroxycinnamyl chromophore in photoactive yellow protein []. Proteins containing the domain often contain other regulatory domains such as response regulator or sensor histidine kinase domains. Other S-box proteins include phytochromes and the aryl hydrocarbon receptor nuclear translocator. This domain has been found in the gene product of the madA gene of the filamentous zygomycete fungus Phycomyces blakesleeanus. It has been shown that MadA encodes a blue-light photoreceptor for phototropism and other light responses. The gene is involved in the phototropic responses associated with sporangiophore growth; they exhibit phototropism by bending toward near-UV and blue wavelengths and away from far-UV wavelengths in a manner that is physiologically similar to plant phototropic responses [].; GO: 0005515 protein binding; PDB: 3NJA_D 3H9W_A 3GDI_B 3ICY_A 3EEH_A 3MR0_B.
Probab=24.11 E-value=17 Score=24.56 Aligned_cols=30 Identities=30% Similarity=0.631 Sum_probs=20.0
Q ss_pred cccccccCCCCCCCHHHH-HHHHHHHHHHhCCCCC
Q 028609 72 LSFYDLLGIPESVSLVEI-KQAYKQMARKYHPDVS 105 (206)
Q Consensus 72 ~d~Y~iLgv~~~as~~eI-kkaYr~l~~~~HPDk~ 105 (206)
.+++++||+++ +++ ...+..+....|||-.
T Consensus 6 ~~~~~i~G~~~----~~~~~~~~~~~~~~ihpdD~ 36 (91)
T PF08447_consen 6 DNFYEIFGYSP----EEIGKPDFEEWLERIHPDDR 36 (91)
T ss_dssp THHHHHHTS-H----HHHTCBEHHHHHHHB-TTTH
T ss_pred HHHHHHhCCCH----HHhccCCHHHHHhhcCHHHH
Confidence 46889998876 555 5556667788999743
No 84
>PRK15321 putative type III secretion system effector protein OrgC; Provisional
Probab=20.31 E-value=2.9e+02 Score=20.47 Aligned_cols=38 Identities=26% Similarity=0.392 Sum_probs=28.8
Q ss_pred ccccccc-----cccCCCCCCCHHHHHHHHHHHHHHhCCCCCC
Q 028609 69 SKELSFY-----DLLGIPESVSLVEIKQAYKQMARKYHPDVSP 106 (206)
Q Consensus 69 ~~~~d~Y-----~iLgv~~~as~~eIkkaYr~l~~~~HPDk~~ 106 (206)
....|+| .+|.||+.++.+++|.+-.++...+.--+++
T Consensus 13 g~~vdlydAF~Q~l~~LP~la~S~~~KD~I~q~m~~F~dp~~G 55 (120)
T PRK15321 13 GGDVDLYDAFYQRLLALPESASSETLKDSIYQEMNAFKDPNSG 55 (120)
T ss_pred CCcchHHHHHHHHHHhCCcccCcHHHHHHHHHHHHHhCCCCCC
Confidence 3445555 4789999999999999999988888643443
Done!