BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028610
(206 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3BY4|A Chain A, Structure Of Ovarian Tumor (Otu) Domain In Complex With
Ubiquitin
Length = 212
Score = 124 bits (311), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 117/210 (55%), Gaps = 19/210 (9%)
Query: 2 EGIIVRRVIPSDNSCLFNAVGYVMEHDKNKAPELRQVIAATVASDPVKYSEAFLGKSNQE 61
E ++ + DNSCLF+A+ Y + ++ +LR++++ V ++PVK+++A L K N++
Sbjct: 17 ENVLSVHPVLDDNSCLFHAIAYGI-FKQDSVRDLREMVSKEVLNNPVKFNDAILDKPNKD 75
Query: 62 YCSWIQDPEKWGGAIELSILADYYGREIAAYDIQTTRCDLYGQ-KYSERVMLIYDGLHYD 120
Y WI E WGGAIE+ I++D I DI + + + + K+ ++++++G+HYD
Sbjct: 76 YAQWILKMESWGGAIEIGIISDALAVAIYVVDIDAVKIEKFNEDKFDNYILILFNGIHYD 135
Query: 121 ALAISPFEGAPEEFDQTIFPVQKGRTIGPAED----LALKLVKEQQRKKTYTDTANFTLR 176
+L ++ F +T+F + P D AL+L ++ +T ++
Sbjct: 136 SLTMNEF--------KTVFNKNQ-----PESDDVLTAALQLASNLKQTGYSFNTHKAQIK 182
Query: 177 CGVCQIGVIGQKEAVEHAQATGHVNFQEYR 206
C CQ+ +G++E HA++TGHV+F + R
Sbjct: 183 CNTCQMTFVGEREVARHAESTGHVDFGQNR 212
>pdb|3C0R|A Chain A, Structure Of Ovarian Tumor (Otu) Domain In Complex With
Ubiquitin
pdb|3C0R|C Chain C, Structure Of Ovarian Tumor (Otu) Domain In Complex With
Ubiquitin
Length = 212
Score = 121 bits (303), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 114/210 (54%), Gaps = 19/210 (9%)
Query: 2 EGIIVRRVIPSDNSCLFNAVGYVMEHDKNKAPELRQVIAATVASDPVKYSEAFLGKSNQE 61
E ++ + DNSCLF+A+ Y + ++ +LR+ ++ V ++PVK+++A L K N++
Sbjct: 17 ENVLSVHPVLDDNSCLFHAIAYGI-FKQDSVRDLREXVSKEVLNNPVKFNDAILDKPNKD 75
Query: 62 YCSWIQDPEKWGGAIELSILADYYGREIAAYDIQTTRCDLYGQ-KYSERVMLIYDGLHYD 120
Y WI E WGGAIE+ I++D I DI + + + + K+ ++++++G+HYD
Sbjct: 76 YAQWILKXESWGGAIEIGIISDALAVAIYVVDIDAVKIEKFNEDKFDNYILILFNGIHYD 135
Query: 121 ALAISPFEGAPEEFDQTIFPVQKGRTIGPAED----LALKLVKEQQRKKTYTDTANFTLR 176
+L + F +T+F + P D AL+L ++ +T ++
Sbjct: 136 SLTXNEF--------KTVFNKNQ-----PESDDVLTAALQLASNLKQTGYSFNTHKAQIK 182
Query: 177 CGVCQIGVIGQKEAVEHAQATGHVNFQEYR 206
C CQ +G++E HA++TGHV+F + R
Sbjct: 183 CNTCQXTFVGEREVARHAESTGHVDFGQNR 212
>pdb|3PHW|A Chain A, Otu Domain Of Crimean Congo Hemorrhagic Fever Virus In
Complex With Ubiquitin
pdb|3PHW|C Chain C, Otu Domain Of Crimean Congo Hemorrhagic Fever Virus In
Complex With Ubiquitin
pdb|3PHW|E Chain E, Otu Domain Of Crimean Congo Hemorrhagic Fever Virus In
Complex With Ubiquitin
pdb|3PHW|G Chain G, Otu Domain Of Crimean Congo Hemorrhagic Fever Virus In
Complex With Ubiquitin
pdb|3PHX|A Chain A, Otu Domain Of Crimean Congo Hemorrhagic Fever Virus In
Complex With Isg15
Length = 185
Score = 35.4 bits (80), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 57/133 (42%), Gaps = 15/133 (11%)
Query: 5 IVRRVIPSDNSCLFNAVGYVMEHDKNKAPELRQVIAATVASDPVKYSEA-----FLGKSN 59
IVR+ P D +C ++++ + NK I S KY + +G S
Sbjct: 33 IVRQ--PGDGNCFYHSIAELTM--PNKTDHSYHYIKRLTESAARKYYQEEPEARLVGLSL 88
Query: 60 QEYCSWIQDPEKWGGAIELSILADYYGREIAAYDIQTTRCDLYGQKYSE-----RVMLIY 114
++Y + +WG +E S+LA G I + + + G K+ + V L++
Sbjct: 89 EDYLKRMLSDNEWGSTLEASMLAKEMGITIIIWTVAASDEVEAGIKFGDGDVFTAVNLLH 148
Query: 115 DG-LHYDALAISP 126
G H+DAL I P
Sbjct: 149 SGQTHFDALRILP 161
>pdb|3PSE|A Chain A, Structure Of A Viral Otu Domain Protease Bound To
Interferon- Stimulated Gene 15 (Isg15)
Length = 171
Score = 35.4 bits (80), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 57/133 (42%), Gaps = 15/133 (11%)
Query: 5 IVRRVIPSDNSCLFNAVGYVMEHDKNKAPELRQVIAATVASDPVKYSEA-----FLGKSN 59
IVR+ P D +C ++++ + NK I S KY + +G S
Sbjct: 33 IVRQ--PGDGNCFYHSIAELTM--PNKTDHSYHYIKRLTESAARKYYQEEPEARLVGLSL 88
Query: 60 QEYCSWIQDPEKWGGAIELSILADYYGREIAAYDIQTTRCDLYGQKYSE-----RVMLIY 114
++Y + +WG +E S+LA G I + + + G K+ + V L++
Sbjct: 89 EDYLKRMLSDNEWGSTLEASMLAKEMGITIIIWTVAASDEVEAGIKFGDGDVFTAVNLLH 148
Query: 115 DG-LHYDALAISP 126
G H+DAL I P
Sbjct: 149 SGQTHFDALRILP 161
>pdb|3ZNH|A Chain A, Crimean Congo Hemorrhagic Fever Virus Otu Domain In
Complex With Ubiquitin-propargyl
Length = 183
Score = 35.4 bits (80), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 60/141 (42%), Gaps = 16/141 (11%)
Query: 5 IVRRVIPSDNSCLFNAVGYVMEHDKNKAPELRQVIAATVASDPVKYSEA-----FLGKSN 59
IVR+ P D +C ++++ + NK I S KY + +G S
Sbjct: 31 IVRQ--PGDGNCFYHSIAELTM--PNKTDHSYHYIKRLTESAARKYYQEEPEARLVGLSL 86
Query: 60 QEYCSWIQDPEKWGGAIELSILADYYGREIAAYDIQTTRCDLYGQKYSE-----RVMLIY 114
++Y + +WG +E S+LA G I + + + G K+ + V L++
Sbjct: 87 EDYLKRMLSDNEWGSTLEASMLAKEMGITIIIWTVAASDEVEAGIKFGDGDVFTAVNLLH 146
Query: 115 DG-LHYDALAISP-FEGAPEE 133
G H+DAL I P FE E
Sbjct: 147 SGQTHFDALRILPQFETDTRE 167
>pdb|3PRP|A Chain A, Structural Analysis Of A Viral Otu Domain Protease From
The Crimean- Congo Hemorrhagic Fever Virus In Complex
With Human Ubiquitin
pdb|3PRP|C Chain C, Structural Analysis Of A Viral Otu Domain Protease From
The Crimean- Congo Hemorrhagic Fever Virus In Complex
With Human Ubiquitin
Length = 178
Score = 35.4 bits (80), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 57/133 (42%), Gaps = 15/133 (11%)
Query: 5 IVRRVIPSDNSCLFNAVGYVMEHDKNKAPELRQVIAATVASDPVKYSEA-----FLGKSN 59
IVR+ P D +C ++++ + NK I S KY + +G S
Sbjct: 31 IVRQ--PGDGNCFYHSIAELTM--PNKTDHSYHYIKRLTESAARKYYQEEPEARLVGLSL 86
Query: 60 QEYCSWIQDPEKWGGAIELSILADYYGREIAAYDIQTTRCDLYGQKYSE-----RVMLIY 114
++Y + +WG +E S+LA G I + + + G K+ + V L++
Sbjct: 87 EDYLKRMLSDNEWGSTLEASMLAKEMGITIIIWTVAASDEVEAGIKFGDGDVFTAVNLLH 146
Query: 115 DG-LHYDALAISP 126
G H+DAL I P
Sbjct: 147 SGQTHFDALRILP 159
>pdb|3PRM|A Chain A, Structural Analysis Of A Viral Otu Domain Protease From
The Crimean- Congo Hemorrhagic Fever Virus In Complex
With Human Ubiquitin
pdb|3PRM|C Chain C, Structural Analysis Of A Viral Otu Domain Protease From
The Crimean- Congo Hemorrhagic Fever Virus In Complex
With Human Ubiquitin
Length = 178
Score = 33.5 bits (75), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 55/133 (41%), Gaps = 15/133 (11%)
Query: 5 IVRRVIPSDNSCLFNAVGYVMEHDKNKAPELRQVIAATVASDPVKYSEA-----FLGKSN 59
IVR+ P D +C ++++ + NK I S KY + +G S
Sbjct: 31 IVRQ--PGDGNCFYHSIAELTX--PNKTDHSYHYIKRLTESAARKYYQEEPEARLVGLSL 86
Query: 60 QEYCSWIQDPEKWGGAIELSILADYYGREIAAYDIQTTRCDLYGQKYSE-----RVMLIY 114
++Y +WG +E S LA G I + + + G K+ + V L++
Sbjct: 87 EDYLKRXLSDNEWGSTLEASXLAKEXGITIIIWTVAASDEVEAGIKFGDGDVFTAVNLLH 146
Query: 115 DG-LHYDALAISP 126
G H+DAL I P
Sbjct: 147 SGQTHFDALRILP 159
>pdb|3PT2|A Chain A, Structure Of A Viral Otu Domain Protease Bound To
Ubiquitin
Length = 187
Score = 33.5 bits (75), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 55/133 (41%), Gaps = 15/133 (11%)
Query: 5 IVRRVIPSDNSCLFNAVGYVMEHDKNKAPELRQVIAATVASDPVKYSEA-----FLGKSN 59
IVR+ P D +C ++++ + NK I S KY + +G S
Sbjct: 34 IVRQ--PGDGNCFYHSIAELTX--PNKTDHSYHYIKRLTESAARKYYQEEPEARLVGLSL 89
Query: 60 QEYCSWIQDPEKWGGAIELSILADYYGREIAAYDIQTTRCDLYGQKYSE-----RVMLIY 114
++Y +WG +E S LA G I + + + G K+ + V L++
Sbjct: 90 EDYLKRXLSDNEWGSTLEASXLAKEXGITIIIWTVAASDEVEAGIKFGDGDVFTAVNLLH 149
Query: 115 DG-LHYDALAISP 126
G H+DAL I P
Sbjct: 150 SGQTHFDALRILP 162
>pdb|4HXD|B Chain B, Diversity Of Ubiquitin And Isg15 Specificity Amongst
Nairoviruses Viral Ovarian Tumor Domain Proteases
pdb|4HXD|D Chain D, Diversity Of Ubiquitin And Isg15 Specificity Amongst
Nairoviruses Viral Ovarian Tumor Domain Proteases
Length = 174
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 54/125 (43%), Gaps = 13/125 (10%)
Query: 11 PSDNSCLFNAVGYVMEHDKNKAPELRQV-----IAATVASDPVKYSEAFLGKSNQEYCSW 65
P D +C ++++ + D R+V +AA V D + G S EY
Sbjct: 34 PGDGNCFYHSIAELF-FDVKTPSSFRKVKEHLQLAAEVYYD-TEPEAVGTGISKDEYIKV 91
Query: 66 IQDPEKWGGAIELSILADYYGREIAAYDIQTTRCDLYGQKY-----SERVMLIYDG-LHY 119
+WGG++E S+L+ + I + + +T K+ S + L++ G H+
Sbjct: 92 AMKDNEWGGSLEASMLSKHLQTTIILWVVNSTEQVTAAIKFGPGRVSTALNLMHVGRTHF 151
Query: 120 DALAI 124
DAL I
Sbjct: 152 DALRI 156
>pdb|3PHU|A Chain A, Otu Domain Of Crimean Congo Hemorrhagic Fever Virus
pdb|3PHU|B Chain B, Otu Domain Of Crimean Congo Hemorrhagic Fever Virus
Length = 219
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 53/127 (41%), Gaps = 15/127 (11%)
Query: 54 FLGKSNQEYCSWIQDPEKWGGAIELSILADYYGREIAAYDIQTTRCDLYGQKYSE----- 108
+G S ++Y + +WG +E S+LA G I + + + G K+ +
Sbjct: 83 LVGLSLEDYLKRMLSDNEWGSTLEASMLAKEMGITIIIWTVAASDEVEAGIKFGDGDVFT 142
Query: 109 RVMLIYDG-LHYDALAISP-FEGAPEE----FDQTI----FPVQKGRTIGPAEDLALKLV 158
V L++ G H+DAL I P FE E D+ I + EDLAL L
Sbjct: 143 AVNLLHSGQTHFDALRILPQFETDTREALSLMDRVIAVDQLTSSSSDELQDYEDLALALT 202
Query: 159 KEQQRKK 165
++ +
Sbjct: 203 SAEESNR 209
>pdb|3TMP|A Chain A, The Catalytic Domain Of Human Deubiquitinase Duba In
Complex With Ubiquitin Aldehyde
pdb|3TMP|C Chain C, The Catalytic Domain Of Human Deubiquitinase Duba In
Complex With Ubiquitin Aldehyde
pdb|3TMP|E Chain E, The Catalytic Domain Of Human Deubiquitinase Duba In
Complex With Ubiquitin Aldehyde
pdb|3TMP|G Chain G, The Catalytic Domain Of Human Deubiquitinase Duba In
Complex With Ubiquitin Aldehyde
Length = 184
Score = 32.0 bits (71), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 22/98 (22%), Positives = 46/98 (46%), Gaps = 8/98 (8%)
Query: 2 EGIIVRRVIPSDNSCLFNAVGYVMEHDKNKAPELRQVIAATVASDPVKYSEAFLGKSNQE 61
+G I+++ + D +CLF AV + D+ ++ +V+ +K ++ F ++
Sbjct: 44 KGFIIKQ-MKEDGACLFRAVADQVYGDQ----DMHEVVRKHCMDYLMKNADYFSNYVTED 98
Query: 62 YCSWIQDPEK---WGGAIELSILADYYGREIAAYDIQT 96
+ ++I K G IE+ +A+ Y R + Y T
Sbjct: 99 FTTYINRKRKNNCHGNHIEMQAMAEMYNRPVEVYQYST 136
>pdb|2QH1|A Chain A, Structure Of Ta289, A Cbs-Rubredoxin-Like Protein, In Its
Fe+2-Bound State
pdb|2QH1|B Chain B, Structure Of Ta289, A Cbs-Rubredoxin-Like Protein, In Its
Fe+2-Bound State
Length = 198
Score = 31.6 bits (70), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 41/93 (44%), Gaps = 17/93 (18%)
Query: 9 VIPSDNSCLFNAVGYVMEHD-------KNKAPE-------LRQVIAATVASDPVKYSEAF 54
V+ DN N VG + E +NK P+ +R+ I + VK A+
Sbjct: 58 VVKDDNG---NDVGLLSERSIIKRFIPRNKKPDEVPIRLVMRKPIPKVKSDYDVKDVAAY 114
Query: 55 LGKSNQEYCSWIQDPEKWGGAIELSILADYYGR 87
L ++ E C+ + DP + G + L+ L+ Y R
Sbjct: 115 LSENGLERCAVVDDPGRVVGIVTLTDLSRYLSR 147
>pdb|1PVM|A Chain A, Crystal Structure Of A Conserved Cbs Domain Protein Ta0289
Of Unknown Function From Thermoplasma Acidophilum
pdb|1PVM|B Chain B, Crystal Structure Of A Conserved Cbs Domain Protein Ta0289
Of Unknown Function From Thermoplasma Acidophilum
Length = 184
Score = 31.6 bits (70), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 41/93 (44%), Gaps = 17/93 (18%)
Query: 9 VIPSDNSCLFNAVGYVMEHD-------KNKAPE-------LRQVIAATVASDPVKYSEAF 54
V+ DN N VG + E +NK P+ +R+ I + VK A+
Sbjct: 44 VVKDDNG---NDVGLLSERSIIKRFIPRNKKPDEVPIRLVMRKPIPKVKSDYDVKDVAAY 100
Query: 55 LGKSNQEYCSWIQDPEKWGGAIELSILADYYGR 87
L ++ E C+ + DP + G + L+ L+ Y R
Sbjct: 101 LSENGLERCAVVDDPGRVVGIVTLTDLSRYLSR 133
>pdb|4B7Y|C Chain C, Crystal Structure Of The Msl1-msl2 Complex
pdb|4B7Y|D Chain D, Crystal Structure Of The Msl1-msl2 Complex
pdb|4B86|C Chain C, Crystal Structure Of The Msl1-msl2 Complex (3.5a)
pdb|4B86|D Chain D, Crystal Structure Of The Msl1-msl2 Complex (3.5a)
pdb|4B86|G Chain G, Crystal Structure Of The Msl1-msl2 Complex (3.5a)
pdb|4B86|H Chain H, Crystal Structure Of The Msl1-msl2 Complex (3.5a)
pdb|4B86|K Chain K, Crystal Structure Of The Msl1-msl2 Complex (3.5a)
pdb|4B86|L Chain L, Crystal Structure Of The Msl1-msl2 Complex (3.5a)
Length = 116
Score = 28.5 bits (62), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 63 CSWIQDPEKWGGAIELSILADYYGREIAAYDIQTT 97
CSW +D E++ +LSIL + Y +++ Y QTT
Sbjct: 81 CSWCKDYEQFEENKQLSILVNCY-KKLCEYITQTT 114
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,356,104
Number of Sequences: 62578
Number of extensions: 250533
Number of successful extensions: 577
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 566
Number of HSP's gapped (non-prelim): 19
length of query: 206
length of database: 14,973,337
effective HSP length: 94
effective length of query: 112
effective length of database: 9,091,005
effective search space: 1018192560
effective search space used: 1018192560
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)