Query 028611
Match_columns 206
No_of_seqs 140 out of 891
Neff 6.3
Searched_HMMs 29240
Date Mon Mar 25 23:52:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028611.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028611hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2pmi_B PHO85 cyclin PHO80, ami 100.0 1.6E-38 5.6E-43 277.7 14.9 150 10-159 32-184 (293)
2 1f5q_B Gamma herpesvirus cycli 98.9 1.1E-08 3.9E-13 87.3 12.3 102 51-155 51-155 (252)
3 1g3n_C V-cyclin; cyclin-depend 98.9 1.7E-08 5.8E-13 85.8 11.6 101 52-155 54-157 (257)
4 3g33_B CCND3 protein; Ser/Thr 98.9 1.2E-08 4.2E-13 89.2 10.8 129 18-154 39-176 (306)
5 2cch_B Cyclin A2, cyclin-A; co 98.8 2.4E-08 8.2E-13 85.0 11.8 100 52-154 42-144 (260)
6 2w96_A G1/S-specific cyclin-D1 98.8 3.1E-08 1E-12 84.8 12.0 100 52-154 60-162 (271)
7 2f2c_A Cyclin homolog, V-cycli 98.8 1.4E-08 4.7E-13 86.2 9.8 100 52-154 55-157 (254)
8 2b9r_A Human cyclin B1; cell c 98.8 4.1E-08 1.4E-12 84.1 12.5 102 51-155 40-144 (269)
9 1w98_B Cyclin E, G1/S-specific 98.8 6.5E-08 2.2E-12 83.6 13.2 103 52-156 53-158 (283)
10 2i53_A Cyclin K; cell cycle, t 98.5 6.6E-07 2.2E-11 75.5 10.4 98 52-153 44-155 (258)
11 1zp2_A RNA polymerase II holoe 98.5 1.3E-06 4.5E-11 73.0 11.9 100 50-153 29-138 (235)
12 2ivx_A Cyclin-T2; transcriptio 98.4 2.5E-06 8.5E-11 72.1 12.4 98 52-153 34-150 (257)
13 3rgf_B Cyclin-C; protein kinas 98.3 6.3E-06 2.2E-10 71.1 12.9 105 52-159 46-168 (285)
14 1jkw_A Cyclin H; cell cycle, c 98.3 1.3E-05 4.4E-10 70.5 14.0 103 53-159 61-174 (323)
15 2pk2_A Cyclin-T1, protein TAT; 98.2 2.2E-06 7.6E-11 76.5 7.3 98 52-153 41-157 (358)
16 1c9b_A General transcription f 98.2 3.3E-05 1.1E-09 63.0 12.7 92 52-147 8-99 (207)
17 1ais_B TFB TFIIB, protein (tra 97.6 0.00041 1.4E-08 56.1 10.2 98 51-152 11-111 (200)
18 3k7a_M Transcription initiatio 95.6 0.014 4.8E-07 51.4 5.2 87 52-142 129-215 (345)
19 1ais_B TFB TFIIB, protein (tra 94.9 0.14 4.9E-06 40.9 9.0 91 50-144 106-196 (200)
20 1c9b_A General transcription f 93.8 0.34 1.1E-05 38.9 9.0 87 49-139 99-185 (207)
21 3rgf_B Cyclin-C; protein kinas 93.6 0.17 5.9E-06 43.0 7.2 115 52-176 157-272 (285)
22 4bbr_M Transcription initiatio 87.7 2.6 9E-05 36.9 9.1 90 51-144 128-217 (345)
23 2i53_A Cyclin K; cell cycle, t 85.7 7 0.00024 32.0 10.3 89 51-142 150-250 (258)
24 2cch_B Cyclin A2, cyclin-A; co 81.7 2.7 9.1E-05 34.9 6.0 118 51-171 138-257 (260)
25 2f2c_A Cyclin homolog, V-cycli 78.9 5.7 0.0002 32.7 7.2 88 51-141 151-246 (254)
26 2ivx_A Cyclin-T2; transcriptio 78.6 25 0.00085 28.6 11.0 89 51-141 145-238 (257)
27 1zp2_A RNA polymerase II holoe 75.3 5.5 0.00019 32.3 6.0 85 52-141 134-218 (235)
28 2b9r_A Human cyclin B1; cell c 74.5 6 0.0002 33.0 6.1 85 51-139 137-221 (269)
29 3k7a_M Transcription initiatio 72.0 0.78 2.7E-05 40.1 0.0 89 47-139 230-318 (345)
30 3g33_B CCND3 protein; Ser/Thr 70.3 11 0.00036 32.2 6.8 89 51-142 170-266 (306)
31 2pk2_A Cyclin-T1, protein TAT; 69.1 13 0.00044 32.5 7.3 89 52-142 153-246 (358)
32 4bbr_M Transcription initiatio 64.9 1.3 4.6E-05 38.8 0.0 91 47-141 230-320 (345)
33 1g3n_C V-cyclin; cyclin-depend 63.8 28 0.00096 28.5 8.0 88 51-141 150-246 (257)
34 2w96_A G1/S-specific cyclin-D1 51.3 52 0.0018 27.0 7.6 89 51-142 156-256 (271)
35 2kpj_A SOS-response transcript 26.0 41 0.0014 22.6 2.4 44 109-159 18-61 (94)
36 1w98_B Cyclin E, G1/S-specific 23.5 3.1E+02 0.01 22.5 9.0 77 51-138 150-237 (283)
37 1dlw_A Hemoglobin; oxygen stor 20.9 63 0.0022 22.8 2.7 27 145-171 71-97 (116)
38 1zs4_A Regulatory protein CII; 20.6 1.3E+02 0.0043 21.0 4.1 47 114-162 25-78 (83)
No 1
>2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B*
Probab=100.00 E-value=1.6e-38 Score=277.75 Aligned_cols=150 Identities=28% Similarity=0.441 Sum_probs=139.4
Q ss_pred hhHHHHHHHHHHHHHHHhcccCCcC---CCCCcccccCCCCCChhHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhCCC
Q 028611 10 MTKLITFLSSFLQRVSESNDINCRF---QPQKISVFHGLTRPSISIQSYLERIFKYANCSPSCFIVAYVYLDRFVQRQPS 86 (206)
Q Consensus 10 ~~~~~~~ia~~L~~~~~~nd~~~~~---~~~~~~~F~~~~~P~isi~~fl~rI~~~~~ls~~~~i~ALiYldRl~~~~~~ 86 (206)
...++..||.+|+++++.||..+.. .+..++.||+..+|.|+|.+|+.||+++++|+++|+++|++||+||+.++|+
T Consensus 32 ~~dlv~~IA~~L~~LI~~Nd~~~~~~~~~~~~~t~F~~~~~P~ISI~~Yl~RI~k~t~ls~~~ll~ALvYLdRL~~~~p~ 111 (293)
T 2pmi_B 32 RTDLVVLISRMLVSLIAINENSATKKSDDQITLTRYHSKIPPNISIFNYFIRLTKFSSLEHCVLMTSLYYIDLLQTVYPD 111 (293)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCC--------CCCCTTCCSSCCSSCHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHHHHcCccccccccccccccccccCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhCCC
Confidence 5689999999999999999998632 3456889999999999999999999999999999999999999999999899
Q ss_pred CCCCcccHHHHHHHHHHHHhhhcCCCccccchhhhccCCCHHHHHHHHHHHHHhCCCceeeCHHHHHHHHHHH
Q 028611 87 LPINSFNVHRLLITSVMVAAKFLDDMYYNNAYYAKVGGISTIEMNFLELDFLFGLSFHLNVTPNAFHTYCTYL 159 (206)
Q Consensus 87 ~~l~~~n~~RL~ltalilAsK~~dD~~~sN~~wa~v~gvs~~eLN~LE~~fL~lLdy~L~Vs~~~y~~y~~~L 159 (206)
+.+++.||||+|++|+|||+|||||.+|+|++||++||++++|||.||++||.+|||+|+|+.++|..|+..+
T Consensus 112 ~~l~~~nvHRLlLtALmlAsK~ldD~~ysN~~wAkVgGisl~ELN~LE~eFL~lLdf~L~V~~ee~~~cy~E~ 184 (293)
T 2pmi_B 112 FTLNSLTAHRFLLTATTVATKGLCDSFSTNAHYAKVGGVRCHELNILENDFLKRVNYRIIPRDHNITLCSIEQ 184 (293)
T ss_dssp CCCSTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHTSCHHHHHHHHHHHHHTTTTCCSCCTTHHHHHHHHS
T ss_pred CccCCchHHHHHHHHHHHHHHhccccccChhHhhhccCcCHHHHHHHHHHHHHHcCCceeeCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999877654
No 2
>1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1
Probab=98.91 E-value=1.1e-08 Score=87.32 Aligned_cols=102 Identities=17% Similarity=0.145 Sum_probs=88.6
Q ss_pred hHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhCCCCCCCcccHHHHHHHHHHHHhhhcCCCccccchhhhcc--CCCHH
Q 028611 51 SIQSYLERIFKYANCSPSCFIVAYVYLDRFVQRQPSLPINSFNVHRLLITSVMVAAKFLDDMYYNNAYYAKVG--GISTI 128 (206)
Q Consensus 51 si~~fl~rI~~~~~ls~~~~i~ALiYldRl~~~~~~~~l~~~n~~RL~ltalilAsK~~dD~~~sN~~wa~v~--gvs~~ 128 (206)
.+-+|+..+....+++++++.+|..|+||+..+.+ +.....+-+-+||+.||+|+-+-....-+.+..++ .++.+
T Consensus 51 ~lvdWl~ev~~~~~l~~eT~~lAv~~lDRfLs~~~---v~~~~lqLvg~tcl~iAsK~eE~~p~~~~~l~~~~~~~yt~~ 127 (252)
T 1f5q_B 51 VLTTWMFCVCKDLRQDNNVFPLAVALLDELFLSTR---IDRENYQSTAAVALHIAGKVRAYMPIKATQLAYLCGGATTAD 127 (252)
T ss_dssp HHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHSC---CCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHHHCTTCCHH
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHhcCCC---cCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhCCCCCHH
Confidence 37889999999999999999999999999999763 56778899999999999999887776777777664 48999
Q ss_pred HHHHHHHHHHHhCCCceee-CHHHHHHH
Q 028611 129 EMNFLELDFLFGLSFHLNV-TPNAFHTY 155 (206)
Q Consensus 129 eLN~LE~~fL~lLdy~L~V-s~~~y~~y 155 (206)
++.+||+.+|..|+|+|.+ ++-.|-.+
T Consensus 128 ~i~~mE~~IL~~L~w~l~~pTp~~FL~~ 155 (252)
T 1f5q_B 128 KLLTLEVKSLDTLSWVADRCLSTDLICY 155 (252)
T ss_dssp HHHHHHHHHHHHTTTCCCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHCCCccCCCCHHHHHHH
Confidence 9999999999999999996 77777543
No 3
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=98.87 E-value=1.7e-08 Score=85.80 Aligned_cols=101 Identities=14% Similarity=0.185 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhCCCCCCCcccHHHHHHHHHHHHhhhcCCCccccchhhhccC--CCHHH
Q 028611 52 IQSYLERIFKYANCSPSCFIVAYVYLDRFVQRQPSLPINSFNVHRLLITSVMVAAKFLDDMYYNNAYYAKVGG--ISTIE 129 (206)
Q Consensus 52 i~~fl~rI~~~~~ls~~~~i~ALiYldRl~~~~~~~~l~~~n~~RL~ltalilAsK~~dD~~~sN~~wa~v~g--vs~~e 129 (206)
+-+|+..+....+++++++.+|..|+||+..+. .+.....+-+-+||+.+|+|+-+-...+-+.+..+++ ++.++
T Consensus 54 lvdwl~ev~~~~~l~~etl~lAv~~~DRfls~~---~v~~~~lqLv~~acl~iA~K~eE~~~p~~~d~~~~~~~~~~~~~ 130 (257)
T 1g3n_C 54 LGTWMFSVCQEYNLEPNVVALALNLLDRLLLIK---QVSKEHFQKTGSACLLVASKLRSLTPISTSSLCYAAADSFSRQE 130 (257)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTC---CCCHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTTCSCHHH
T ss_pred HHHHHHHHHHHhCCCccHHHHHHHHHHHHHccC---CCCHHHHHHHHHHHHHHHHHHccccCCCHHHHHHHHCCCCCHHH
Confidence 788999999999999999999999999999864 3567788899999999999998777777788887743 89999
Q ss_pred HHHHHHHHHHhCCCceee-CHHHHHHH
Q 028611 130 MNFLELDFLFGLSFHLNV-TPNAFHTY 155 (206)
Q Consensus 130 LN~LE~~fL~lLdy~L~V-s~~~y~~y 155 (206)
+.+||+.+|..|+|++.+ ++..|-..
T Consensus 131 i~~mE~~iL~~L~~~l~~~tp~~fl~~ 157 (257)
T 1g3n_C 131 LIDQEKELLEKLAWRTEAVLATDVTSF 157 (257)
T ss_dssp HHHHHHHHHHHTTTCCCCCCHHHHHHH
T ss_pred HHHHHHHHHHHCCCcCCCCCHHHHHHH
Confidence 999999999999999996 77666543
No 4
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=98.86 E-value=1.2e-08 Score=89.23 Aligned_cols=129 Identities=17% Similarity=0.243 Sum_probs=100.2
Q ss_pred HHHHHHHHHhcccCCcCCCCCcccccCCCCCCh------hHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhCCCCCCCc
Q 028611 18 SSFLQRVSESNDINCRFQPQKISVFHGLTRPSI------SIQSYLERIFKYANCSPSCFIVAYVYLDRFVQRQPSLPINS 91 (206)
Q Consensus 18 a~~L~~~~~~nd~~~~~~~~~~~~F~~~~~P~i------si~~fl~rI~~~~~ls~~~~i~ALiYldRl~~~~~~~~l~~ 91 (206)
.++++.+.+......+ ...-|.+ ..|.| .+-+|+..+....+++++++.+|..|+||+..+.+ +..
T Consensus 39 ~~i~~~l~~~E~~~~p----~~~y~~~-~q~~i~~~~R~~lvdwl~ev~~~~~l~~~t~~lAv~~lDRfls~~~---v~~ 110 (306)
T 3g33_B 39 QRVLQSLLRLEERYVP----RASYFQC-VQREIKPHMRKMLAYWMLEVCEEQRCEEEVFPLAMNYLDRYLSCVP---TRK 110 (306)
T ss_dssp HHHHHHHHHHGGGGSC----SSCCTTT-STTTCCHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHCC---CCG
T ss_pred HHHHHHHHHHHHHhCC----CcHHHhh-cCccCCHHHHHHHHHHHHHHHHHhCCcHhHHHHHHHHHHHHHhcCC---CcH
Confidence 3566666666555421 1122322 12333 37889999999999999999999999999999763 567
Q ss_pred ccHHHHHHHHHHHHhhhcCCCccccchhhhccC--CCHHHHHHHHHHHHHhCCCceee-CHHHHHH
Q 028611 92 FNVHRLLITSVMVAAKFLDDMYYNNAYYAKVGG--ISTIEMNFLELDFLFGLSFHLNV-TPNAFHT 154 (206)
Q Consensus 92 ~n~~RL~ltalilAsK~~dD~~~sN~~wa~v~g--vs~~eLN~LE~~fL~lLdy~L~V-s~~~y~~ 154 (206)
...+.+-++|+.||+|+-+-...+.+.+..+++ ++.+++.+||+.+|..|+|+|.+ ++-.|-.
T Consensus 111 ~~lqLv~~tcL~lAsK~eE~~p~~~~~l~~~~~~~~~~~~i~~mE~~IL~~L~f~l~~~tp~~fl~ 176 (306)
T 3g33_B 111 AQLQLLGAVCMLLASKLRETTPLTIEKLCIYTDHAVSPRQLRDWEVLVLGKLKWDLAAVIAHDFLA 176 (306)
T ss_dssp GGHHHHHHHHHHHHHHHHCSSCCCTTHHHHHTTTSSCHHHHHHHHHHHHHHTTTCCCCCCGGGGHH
T ss_pred HHHHHHHHHHHHHHHHhccCCCCCHHHHHHHhccCccHHHHHHHHHHHHHHcCCccCCCCHHHHHH
Confidence 889999999999999998877777778877754 89999999999999999999996 6555543
No 5
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=98.85 E-value=2.4e-08 Score=85.00 Aligned_cols=100 Identities=19% Similarity=0.199 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhCCCCCCCcccHHHHHHHHHHHHhhhcCCCccccchhhhcc--CCCHHH
Q 028611 52 IQSYLERIFKYANCSPSCFIVAYVYLDRFVQRQPSLPINSFNVHRLLITSVMVAAKFLDDMYYNNAYYAKVG--GISTIE 129 (206)
Q Consensus 52 i~~fl~rI~~~~~ls~~~~i~ALiYldRl~~~~~~~~l~~~n~~RL~ltalilAsK~~dD~~~sN~~wa~v~--gvs~~e 129 (206)
+-+|+..+....+++++++.+|..|+||+..+.+ +.....+-+-+||+.+|+|+-+....+-+.+..++ .++.++
T Consensus 42 lvdwl~~v~~~~~l~~~tl~lAv~~lDRfls~~~---v~~~~lqlv~~acl~iA~K~ee~~~~~~~d~~~i~~~~~~~~~ 118 (260)
T 2cch_B 42 LVDWLVEVGEEYKLQNETLHLAVNYIDRFLSSMS---VLRGKLQLVGTAAMLLASKFEEIYPPEVAEFVYITDDTYTKKQ 118 (260)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCC---CCHHHHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTSSSCHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccCC---CCHHHHhHHHHHHHHHHHHhcccCCCCHHHHHHHHcCCcCHHH
Confidence 6789999999999999999999999999999763 56678889999999999999887677778888775 389999
Q ss_pred HHHHHHHHHHhCCCceee-CHHHHHH
Q 028611 130 MNFLELDFLFGLSFHLNV-TPNAFHT 154 (206)
Q Consensus 130 LN~LE~~fL~lLdy~L~V-s~~~y~~ 154 (206)
+.+||+.+|..|+|++.+ ++..|-.
T Consensus 119 i~~mE~~iL~~L~~~l~~~tp~~fl~ 144 (260)
T 2cch_B 119 VLRMEHLVLKVLTFDLAAPTVNQFLT 144 (260)
T ss_dssp HHHHHHHHHHHTTTCCCCCCHHHHHH
T ss_pred HHHHHHHHHHHcCCccCCCCHHHHHH
Confidence 999999999999999986 6655543
No 6
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=98.83 E-value=3.1e-08 Score=84.81 Aligned_cols=100 Identities=23% Similarity=0.384 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhCCCCCCCcccHHHHHHHHHHHHhhhcCCCccccchhhhcc--CCCHHH
Q 028611 52 IQSYLERIFKYANCSPSCFIVAYVYLDRFVQRQPSLPINSFNVHRLLITSVMVAAKFLDDMYYNNAYYAKVG--GISTIE 129 (206)
Q Consensus 52 i~~fl~rI~~~~~ls~~~~i~ALiYldRl~~~~~~~~l~~~n~~RL~ltalilAsK~~dD~~~sN~~wa~v~--gvs~~e 129 (206)
+.+|+..+..+.+++++++.+|..|+||+..+.+ +.....+-+-+||+.+|+|+-+-...+-+.+..++ .++.++
T Consensus 60 lv~wl~~v~~~~~l~~~tl~lAv~~lDRfls~~~---v~~~~lqlv~~acL~iAsK~EE~~p~~~~~~~~~~~~~~~~~e 136 (271)
T 2w96_A 60 VATWMLEVCEEQKCEEEVFPLAMNYLDRFLSLEP---VKKSRLQLLGATCMFVASKMKETIPLTAEKLCIYTDNSIRPEE 136 (271)
T ss_dssp HHHHHHHHHHHTTCCTTHHHHHHHHHHHHHTTSC---CCTTTHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTTTSSCHHH
T ss_pred HHHHHHHHHHHHCCchhHHHHHHHHHHHhCCcCC---cCHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHhcCCCCHHH
Confidence 6789999999999999999999999999999753 56678999999999999999876666777777774 489999
Q ss_pred HHHHHHHHHHhCCCceee-CHHHHHH
Q 028611 130 MNFLELDFLFGLSFHLNV-TPNAFHT 154 (206)
Q Consensus 130 LN~LE~~fL~lLdy~L~V-s~~~y~~ 154 (206)
+.+||+.+|+.|+|++.+ ++..|-.
T Consensus 137 I~~mE~~IL~~L~~~l~~~tp~~fl~ 162 (271)
T 2w96_A 137 LLQMELLLVNKLKWNLAAMTPHDFIE 162 (271)
T ss_dssp HHHHHHHHHHHTTTCCCCCCHHHHHH
T ss_pred HHHHHHHHHHHCCCccCCCCHHHHHH
Confidence 999999999999999996 7766653
No 7
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=98.83 E-value=1.4e-08 Score=86.20 Aligned_cols=100 Identities=13% Similarity=0.193 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhCCCCCCCcccHHHHHHHHHHHHhhhcCCCccccchhhhccC--CCHHH
Q 028611 52 IQSYLERIFKYANCSPSCFIVAYVYLDRFVQRQPSLPINSFNVHRLLITSVMVAAKFLDDMYYNNAYYAKVGG--ISTIE 129 (206)
Q Consensus 52 i~~fl~rI~~~~~ls~~~~i~ALiYldRl~~~~~~~~l~~~n~~RL~ltalilAsK~~dD~~~sN~~wa~v~g--vs~~e 129 (206)
+-+|+..+....+++++++.+|..|+||+..+.+ +.....+-+-+||+.+|+|+-+....+-+.+..+++ ++.++
T Consensus 55 lvdwl~~v~~~~~l~~etl~lAv~~~DRfls~~~---v~~~~lqLv~~acl~iA~K~eE~~~p~~~d~~~~~~~~~~~~~ 131 (254)
T 2f2c_A 55 LLTWMHLLCESFELDKSVFPLSVSILDRYLCKKQ---GTKKTLQKIGAACVLIGSKIRTVKPMTVSKLTYLSCDCFTNLE 131 (254)
T ss_dssp HHHHHHHHHHHTTCCTTHHHHHHHHHHHHTTTSC---CCTTTHHHHHHHHHHHHHHHHCSSCCCHHHHSTTC---CCHHH
T ss_pred HHHHHHHHHHHHCCCchHHHHHHHHHHHHHccCC---cCHHHccHHHHHHHHHHHHhcccCCCCHHHHHHHhCCCCCHHH
Confidence 6889999999999999999999999999998653 567788999999999999998877777778887753 89999
Q ss_pred HHHHHHHHHHhCCCceee-CHHHHHH
Q 028611 130 MNFLELDFLFGLSFHLNV-TPNAFHT 154 (206)
Q Consensus 130 LN~LE~~fL~lLdy~L~V-s~~~y~~ 154 (206)
+.+||+.+|..|+|++.+ ++..|-.
T Consensus 132 i~~mE~~IL~~L~~~l~~~tp~~fl~ 157 (254)
T 2f2c_A 132 LINQEKDILEALKWDTEAVLATDFLI 157 (254)
T ss_dssp HHHHHHHHHHHTTTCCCCCCGGGSHH
T ss_pred HHHHHHHHHHHCCCcCCCCCHHHHHH
Confidence 999999999999999995 6655543
No 8
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=98.82 E-value=4.1e-08 Score=84.11 Aligned_cols=102 Identities=17% Similarity=0.221 Sum_probs=88.6
Q ss_pred hHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhCCCCCCCcccHHHHHHHHHHHHhhhcCCCccccchhhhccC--CCHH
Q 028611 51 SIQSYLERIFKYANCSPSCFIVAYVYLDRFVQRQPSLPINSFNVHRLLITSVMVAAKFLDDMYYNNAYYAKVGG--ISTI 128 (206)
Q Consensus 51 si~~fl~rI~~~~~ls~~~~i~ALiYldRl~~~~~~~~l~~~n~~RL~ltalilAsK~~dD~~~sN~~wa~v~g--vs~~ 128 (206)
.+.+|+..+..+.+++++++..|..|+||+..+.+ +.....+-+.+||+.+|+|+-+....+-+.+..+++ ++.+
T Consensus 40 ~lv~wl~~v~~~~~l~~~tl~lAv~~lDRfl~~~~---v~~~~lqlv~~acL~iA~K~eE~~~p~~~d~~~~~~~~~~~~ 116 (269)
T 2b9r_A 40 ILIDWLVQVQMKFRLLQETMYMTVSIIDRFMQNNS---VPKKMLQLVGVTAMFIASKYEEMYPPEIGDFAFVTDNTYTKH 116 (269)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTTSC---CCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHHTCSSSCHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCC---CcHHHhhHHHHHHHHHHHhcccccCccHHHHHHHhcCCCCHH
Confidence 37889999999999999999999999999999753 567789999999999999998776677778887764 8999
Q ss_pred HHHHHHHHHHHhCCCceee-CHHHHHHH
Q 028611 129 EMNFLELDFLFGLSFHLNV-TPNAFHTY 155 (206)
Q Consensus 129 eLN~LE~~fL~lLdy~L~V-s~~~y~~y 155 (206)
++.+||+.+|..|+|++.+ ++..|-..
T Consensus 117 eI~~mE~~IL~~L~f~l~~~tp~~fl~~ 144 (269)
T 2b9r_A 117 QIRQMEMKILRALNFGLGRPLPLHFLRR 144 (269)
T ss_dssp HHHHHHHHHHHHTTSCCCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCccCCCCHHHHHHH
Confidence 9999999999999999996 76666543
No 9
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=98.80 E-value=6.5e-08 Score=83.55 Aligned_cols=103 Identities=19% Similarity=0.212 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhCCCCCCCcccHHHHHHHHHHHHhhhcCCCccccchhhhcc--CCCHHH
Q 028611 52 IQSYLERIFKYANCSPSCFIVAYVYLDRFVQRQPSLPINSFNVHRLLITSVMVAAKFLDDMYYNNAYYAKVG--GISTIE 129 (206)
Q Consensus 52 i~~fl~rI~~~~~ls~~~~i~ALiYldRl~~~~~~~~l~~~n~~RL~ltalilAsK~~dD~~~sN~~wa~v~--gvs~~e 129 (206)
+.+|+..+..+.+++++++.+|..|+||+..+.. .+.....+-+-++|+.+|+|+-+-...+.+.+..++ .++.+|
T Consensus 53 lv~wl~~v~~~~~l~~~tl~lAv~~lDRfls~~~--~v~~~~lqlv~~acL~iA~K~eE~~~p~l~~~~~i~~~~~~~~e 130 (283)
T 1w98_B 53 LLDWLMEVCEVYKLHRETFYLAQDFFDRYMATQE--NVVKTLLQLIGISSLFIAAKLEEIYPPKLHQFAYVTDGACSGDE 130 (283)
T ss_dssp HHHHHHHHHHHTTCBHHHHHHHHHHHHHHHHHCC--CCCGGGHHHHHHHHHHHHHHHHCSSCCCHHHHHHTTTTSSCHHH
T ss_pred HHHHHHHHHHHhCCCccHHHHHHHHHHHHHHhCC--CCCHHHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHcCCCCHHH
Confidence 6789999999999999999999999999999732 246778999999999999999887677778888776 489999
Q ss_pred HHHHHHHHHHhCCCceee-CHHHHHHHH
Q 028611 130 MNFLELDFLFGLSFHLNV-TPNAFHTYC 156 (206)
Q Consensus 130 LN~LE~~fL~lLdy~L~V-s~~~y~~y~ 156 (206)
+.+||+.+|..|+|+|.+ ++..|-.++
T Consensus 131 i~~mE~~IL~~L~~~l~~~tp~~fL~~f 158 (283)
T 1w98_B 131 ILTMELMIMKALKWRLSPLTIVSWLNVY 158 (283)
T ss_dssp HHHHHHHHHHHTTTCCCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcCCCCCHHHHHHHH
Confidence 999999999999999996 776665443
No 10
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=98.50 E-value=6.6e-07 Score=75.53 Aligned_cols=98 Identities=17% Similarity=0.160 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhCCCCCCCcccHHHHHHHHHHHHhhhcCCCccccchhhhc---------
Q 028611 52 IQSYLERIFKYANCSPSCFIVAYVYLDRFVQRQPSLPINSFNVHRLLITSVMVAAKFLDDMYYNNAYYAKV--------- 122 (206)
Q Consensus 52 i~~fl~rI~~~~~ls~~~~i~ALiYldRl~~~~~~~~l~~~n~~RL~ltalilAsK~~dD~~~sN~~wa~v--------- 122 (206)
..+||.++....+++++++-.|..|+||+..+.+ +.....+-+.++|+.+|+|+-+ ...+-+.+..+
T Consensus 44 ~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~---~~~~~~qlv~~acL~lA~K~eE-~~~~l~d~~~~~~~~~~~~~ 119 (258)
T 2i53_A 44 GARFIFDVGTRLGLHYDTLATGIIYFHRFYMFHS---FKQFPRYVTGACCLFLAGKVEE-TPKKCKDIIKTARSLLNDVQ 119 (258)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSC---TTTSCHHHHHHHHHHHHHHHTT-CCCCHHHHHHHHHHHSCHHH
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCC---hhhcCHHHHHHHHHHHHHcccc-ccccHHHHHHHHHHHhchhh
Confidence 5688999999999999999999999999998653 4567888889999999999876 44444444432
Q ss_pred ----cCCCHHHHHHHHHHHHHhCCCceee-CHHHHH
Q 028611 123 ----GGISTIEMNFLELDFLFGLSFHLNV-TPNAFH 153 (206)
Q Consensus 123 ----~gvs~~eLN~LE~~fL~lLdy~L~V-s~~~y~ 153 (206)
+.-+.+++-.||+.+|..|+|++.+ ++..|-
T Consensus 120 ~~~~~~~~~~~i~~~E~~iL~~L~f~l~~~~P~~fl 155 (258)
T 2i53_A 120 FGQFGDDPKEEVMVLERILLQTIKFDLQVEHPYQFL 155 (258)
T ss_dssp HGGGCSCHHHHHHHHHHHHHHHTTTCCCCCCHHHHH
T ss_pred hhhhhhhHHHHHHHHHHHHHHHCCCceeccChHHHH
Confidence 2235789999999999999999997 666554
No 11
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=98.49 E-value=1.3e-06 Score=73.02 Aligned_cols=100 Identities=15% Similarity=0.165 Sum_probs=83.6
Q ss_pred hhHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhCCCCCCCc-ccHHHHHHHHHHHHhhhcCCCccccchhhhcc-----
Q 028611 50 ISIQSYLERIFKYANCSPSCFIVAYVYLDRFVQRQPSLPINS-FNVHRLLITSVMVAAKFLDDMYYNNAYYAKVG----- 123 (206)
Q Consensus 50 isi~~fl~rI~~~~~ls~~~~i~ALiYldRl~~~~~~~~l~~-~n~~RL~ltalilAsK~~dD~~~sN~~wa~v~----- 123 (206)
....++|.++....+++..++-.|..|++|+..++. +.. .+.+-+.++||.+|+|+-+ ....-+.+..++
T Consensus 29 ~~~~~~i~~v~~~l~L~~~t~~~A~~~~~Rf~~~~~---~~~~~~~~lv~~acL~lA~K~Ee-~~~~l~d~~~~~~~~~~ 104 (235)
T 1zp2_A 29 IYQWKVVQTFGDRLRLRQRVLATAIVLLRRYMLKKN---EEKGFSLEALVATCIYLSCKVEE-CPVHIRTICNEANDLWS 104 (235)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCC---SCCCCCHHHHHHHHHHHHHHHTT-CCCCHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcc---cccccCHHHHHHHHHHHHhcccc-CcccHHHHHHHHHHHcc
Confidence 346788999999999999999999999999999763 455 7889999999999999966 455556666553
Q ss_pred ---CCCHHHHHHHHHHHHHhCCCceee-CHHHHH
Q 028611 124 ---GISTIEMNFLELDFLFGLSFHLNV-TPNAFH 153 (206)
Q Consensus 124 ---gvs~~eLN~LE~~fL~lLdy~L~V-s~~~y~ 153 (206)
.++.+++-.||+.+|+.|+|++.+ ++..|-
T Consensus 105 ~~~~~~~~~I~~~E~~iL~~L~f~l~~~~P~~~l 138 (235)
T 1zp2_A 105 LKVKLSRSNISEIEFEIISVLDAFLIVHHPYTSL 138 (235)
T ss_dssp CSSCCCHHHHHHHHHHHHHHTTTCCCCCCTHHHH
T ss_pred chhhccHHHHHHHHHHHHHHCCCcEEecChHHHH
Confidence 578999999999999999999997 555553
No 12
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=98.44 E-value=2.5e-06 Score=72.06 Aligned_cols=98 Identities=23% Similarity=0.271 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhCCCCCCCcccHHHHHHHHHHHHhhhcCCCccccchhhhccC-------
Q 028611 52 IQSYLERIFKYANCSPSCFIVAYVYLDRFVQRQPSLPINSFNVHRLLITSVMVAAKFLDDMYYNNAYYAKVGG------- 124 (206)
Q Consensus 52 i~~fl~rI~~~~~ls~~~~i~ALiYldRl~~~~~~~~l~~~n~~RL~ltalilAsK~~dD~~~sN~~wa~v~g------- 124 (206)
..+||.++....+++++++-.|..|+||+..++. +.....+-+.+|||.+|+|+-+. ...-+++..++.
T Consensus 34 ~~~~i~~v~~~l~l~~~t~~~A~~~~dRf~~~~~---~~~~~~qlv~~acL~lA~K~EE~-p~~l~d~~~~~~~~~~~~~ 109 (257)
T 2ivx_A 34 AANLIQEMGQRLNVSQLTINTAIVYMHRFYMHHS---FTKFNKNIISSTALFLAAKVEEQ-ARKLEHVIKVAHACLHPLE 109 (257)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTSC---TTTSCHHHHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHHCTTS
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhhCC---hhhhCHHHHHHHHHHHHhccccC-CcCHHHHHHHHHHHhccCC
Confidence 6788999999999999999999999999998653 56678899999999999999765 555555554321
Q ss_pred ---------CC--HHHHHHHHHHHHHhCCCceee-CHHHHH
Q 028611 125 ---------IS--TIEMNFLELDFLFGLSFHLNV-TPNAFH 153 (206)
Q Consensus 125 ---------vs--~~eLN~LE~~fL~lLdy~L~V-s~~~y~ 153 (206)
+. .+++-.||+.+|..|+|++.+ ++..|-
T Consensus 110 ~~~~~~~~~y~~~~~~I~~~E~~iL~~L~f~l~~~~P~~fl 150 (257)
T 2ivx_A 110 PLLDTKCDAYLQQTRELVILETIMLQTLGFEITIEHPHTDV 150 (257)
T ss_dssp CCCCTTSHHHHHHHHHHHHHHHHHHHHTTTCCCCCCHHHHH
T ss_pred CCCCcchHHHHHHHHHHHHHHHHHHHHcccceEeeCcHHHH
Confidence 22 899999999999999999997 666554
No 13
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=98.34 E-value=6.3e-06 Score=71.09 Aligned_cols=105 Identities=17% Similarity=0.112 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhCCCCCCCcccHHHHHHHHHHHHhhhcCCCccccchhhhc---------
Q 028611 52 IQSYLERIFKYANCSPSCFIVAYVYLDRFVQRQPSLPINSFNVHRLLITSVMVAAKFLDDMYYNNAYYAKV--------- 122 (206)
Q Consensus 52 i~~fl~rI~~~~~ls~~~~i~ALiYldRl~~~~~~~~l~~~n~~RL~ltalilAsK~~dD~~~sN~~wa~v--------- 122 (206)
..+||.++....+++..++-.|.+|++|+..++. +.....+-+.++||.+|+|+-+-...+.+....+
T Consensus 46 ~~~~I~~v~~~l~L~~~t~~tA~~~~~RF~~~~s---~~~~~~~lva~acLfLA~K~EE~~~~~~~di~~~~~~~~k~~~ 122 (285)
T 3rgf_B 46 FTNVIQALGEHLKLRQQVIATATVYFKRFYARYS---LKSIDPVLMAPTCVFLASKVEEFGVVSNTRLIAAATSVLKTRF 122 (285)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHSC---TTTSCHHHHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhCC---chhcCHHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHcccc
Confidence 5788999999999999999999999999999753 4567889999999999999865543333333221
Q ss_pred -------cCCCHHHHHHHHHHHHHhCCCceee-CHHHHH-HHHHHH
Q 028611 123 -------GGISTIEMNFLELDFLFGLSFHLNV-TPNAFH-TYCTYL 159 (206)
Q Consensus 123 -------~gvs~~eLN~LE~~fL~lLdy~L~V-s~~~y~-~y~~~L 159 (206)
...+.+++-.||+.+|..|+|++.| ++..|- .|...+
T Consensus 123 ~~~~~~~~~~~~~~Il~~E~~iL~~L~f~l~v~~P~~fL~~~~~~l 168 (285)
T 3rgf_B 123 SYAFPKEFPYRMNHILECEFYLLELMDCCLIVYHPYRPLLQYVQDM 168 (285)
T ss_dssp TTTCCSCCCCCHHHHHHHHHHHHHHTTTCCCCCCSHHHHHHHHHHH
T ss_pred cccCchhhHHHHHHHHHHHHHHHHHcCCCeEeCChHHHHHHHHHHh
Confidence 1257899999999999999999987 454443 444433
No 14
>1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A
Probab=98.29 E-value=1.3e-05 Score=70.45 Aligned_cols=103 Identities=17% Similarity=0.187 Sum_probs=81.5
Q ss_pred HHHHHHHHHHcC--CChHHHHHHHHHHHHHhhhCCCCCCCcccHHHHHHHHHHHHhhhcCCCccccchhhhccCC-----
Q 028611 53 QSYLERIFKYAN--CSPSCFIVAYVYLDRFVQRQPSLPINSFNVHRLLITSVMVAAKFLDDMYYNNAYYAKVGGI----- 125 (206)
Q Consensus 53 ~~fl~rI~~~~~--ls~~~~i~ALiYldRl~~~~~~~~l~~~n~~RL~ltalilAsK~~dD~~~sN~~wa~v~gv----- 125 (206)
.++|.++....+ ++..++-.|.+|++|+..+++ +.....+-+.+|||.+|+|+=+- +.+-+.+..+...
T Consensus 61 ~~~I~ev~~~l~~~Lp~~t~~tA~~~~~RF~~~~s---~~~~~~~lva~acLfLA~K~EE~-~~~l~d~v~~~~~~p~~~ 136 (323)
T 1jkw_A 61 EKRLLEFCSVFKPAMPRSVVGTACMYFKRFYLNNS---VMEYHPRIIMLTCAFLACKVDEF-NVSSPQFVGNLRESPLGQ 136 (323)
T ss_dssp HHHHHHHHHHCTTTCCHHHHHHHHHHHHHHGGGSC---TTTSCHHHHHHHHHHHHHHHTTC-CCCHHHHGGGSSSCHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhhCC---hhhcCHHHHHHHHHHHHHhhhcC-CCCHHHHHHHhccChhhh
Confidence 467888889999 999999999999999999753 45678999999999999998654 4555666654432
Q ss_pred --CHHHHHHHHHHHHHhCCCceee-CHHHHH-HHHHHH
Q 028611 126 --STIEMNFLELDFLFGLSFHLNV-TPNAFH-TYCTYL 159 (206)
Q Consensus 126 --s~~eLN~LE~~fL~lLdy~L~V-s~~~y~-~y~~~L 159 (206)
..+++-.||+.+|..|+|+|.| ++..|- .|...+
T Consensus 137 ~~~~~~Il~~E~~iL~~L~f~l~v~~P~~~L~~~l~~l 174 (323)
T 1jkw_A 137 EKALEQILEYELLLIQQLNFHLIVHNPYRPFEGFLIDL 174 (323)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCCCCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCcEEcCChHHHHHHHHHHH
Confidence 3689999999999999999997 555443 455444
No 15
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=98.21 E-value=2.2e-06 Score=76.53 Aligned_cols=98 Identities=22% Similarity=0.251 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhCCCCCCCcccHHHHHHHHHHHHhhhcCCCccccchhhhccC-------
Q 028611 52 IQSYLERIFKYANCSPSCFIVAYVYLDRFVQRQPSLPINSFNVHRLLITSVMVAAKFLDDMYYNNAYYAKVGG------- 124 (206)
Q Consensus 52 i~~fl~rI~~~~~ls~~~~i~ALiYldRl~~~~~~~~l~~~n~~RL~ltalilAsK~~dD~~~sN~~wa~v~g------- 124 (206)
+.+||.++....+++.+++..|..|+||+..+.. +...+.+-+.+|||.||+|+-+. ...-+++..+..
T Consensus 41 ~v~wI~ev~~~l~L~~~t~~tAv~~~dRFl~~~s---v~~~~~qlva~acLfLA~K~EE~-p~~l~d~v~v~~~~~~~~~ 116 (358)
T 2pk2_A 41 AANLLQDMGQRLNVSQLTINTAIVYMHRFYMIQS---FTRFPGNSVAPAALFLAAKVEEQ-PKKLEHVIKVAHTCLHPQE 116 (358)
T ss_dssp HHHHHHHHHTTTTCCHHHHHHHHHHHHHHTTTSC---TTTSCHHHHHHHHHHHHHHHTTC-CCCHHHHHTTHHHHHCSSS
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCC---cccccHHHHHHHHHHHHHhhccC-CCCHHHHHHHHHHHhcccc
Confidence 6778999999999999999999999999998653 56778999999999999999665 444445543321
Q ss_pred ---------C--CHHHHHHHHHHHHHhCCCceee-CHHHHH
Q 028611 125 ---------I--STIEMNFLELDFLFGLSFHLNV-TPNAFH 153 (206)
Q Consensus 125 ---------v--s~~eLN~LE~~fL~lLdy~L~V-s~~~y~ 153 (206)
+ ..++|-.||+.+|..|+|+|.+ ++..|-
T Consensus 117 ~~~~~~~~~y~~~~~~Il~~E~~IL~~L~f~L~v~~P~~fL 157 (358)
T 2pk2_A 117 SLPDTRSEAYLQQVQDLVILESIILQTLGFELTIDHPHTHV 157 (358)
T ss_dssp CCCCTTSHHHHGGGTGGGTHHHHHHHHTTTCCCCCCTTHHH
T ss_pred ccccccchhhhHHHHHHHHHHHHHHHHcCCceeCCCHHHHH
Confidence 1 2789999999999999999997 555443
No 16
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=98.15 E-value=3.3e-05 Score=63.04 Aligned_cols=92 Identities=9% Similarity=-0.004 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhCCCCCCCcccHHHHHHHHHHHHhhhcCCCccccchhhhccCCCHHHHH
Q 028611 52 IQSYLERIFKYANCSPSCFIVAYVYLDRFVQRQPSLPINSFNVHRLLITSVMVAAKFLDDMYYNNAYYAKVGGISTIEMN 131 (206)
Q Consensus 52 i~~fl~rI~~~~~ls~~~~i~ALiYldRl~~~~~~~~l~~~n~~RL~ltalilAsK~~dD~~~sN~~wa~v~gvs~~eLN 131 (206)
-.++|.++....+++..+.-.|..|++|+..++. +...+..-+..+|+-+|.|.-+ .+.+-+.++.+.+++.+++.
T Consensus 8 a~~~I~~~~~~L~L~~~v~~~A~~~~~r~~~~~~---~~~~~~~~v~aaclylAcK~ee-~p~~l~di~~~~~~~~~~i~ 83 (207)
T 1c9b_A 8 AFKEITTMADRINLPRNIVDRTNNLFKQVYEQKS---LKGRANDAIASACLYIACRQEG-VPRTFKEICAVSRISKKEIG 83 (207)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTC---STTSCHHHHHHHHHHHHHHHTT-CCCCHHHHHHTSSSCHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCC---cCCCCHHHHHHHHHHHHHHhcC-CCCCHHHHHHHHCCCHHHHH
Confidence 3568899999999999999999999999999753 4567788999999999999855 57888999999999999999
Q ss_pred HHHHHHHHhCCCceee
Q 028611 132 FLELDFLFGLSFHLNV 147 (206)
Q Consensus 132 ~LE~~fL~lLdy~L~V 147 (206)
++|+.+|+.|+|++.+
T Consensus 84 ~~~~~ll~~L~~~l~~ 99 (207)
T 1c9b_A 84 RCFKLILKALETSVDL 99 (207)
T ss_dssp HHHHHHHHHTTCCCCC
T ss_pred HHHHHHHHHHCCCcCc
Confidence 9999999999999976
No 17
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=97.61 E-value=0.00041 Score=56.09 Aligned_cols=98 Identities=14% Similarity=0.080 Sum_probs=84.1
Q ss_pred hHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhCCCCCCCcccHHHHHHHHHHHHhhhcCCCccccchhhhccCCCHHHH
Q 028611 51 SIQSYLERIFKYANCSPSCFIVAYVYLDRFVQRQPSLPINSFNVHRLLITSVMVAAKFLDDMYYNNAYYAKVGGISTIEM 130 (206)
Q Consensus 51 si~~fl~rI~~~~~ls~~~~i~ALiYldRl~~~~~~~~l~~~n~~RL~ltalilAsK~~dD~~~sN~~wa~v~gvs~~eL 130 (206)
.-.++|.++....+++..+.-.|..|.+|+...+. +...+..-+..+|+-+|.|..+ ...+-++.+.++|++.+++
T Consensus 11 ~a~~~I~~~~~~L~L~~~v~~~A~~l~~~~~~~~~---~~gr~~~~vaaAclylAcr~~~-~p~~l~di~~~~~v~~~~i 86 (200)
T 1ais_B 11 FALSELDRITAQLKLPRHVEEEAARLYREAVRKGL---IRGRSIESVMAACVYAACRLLK-VPRTLDEIADIARVDKKEI 86 (200)
T ss_dssp HHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTTT---TTTCCHHHHHHHHHHHHHHHHT-CCCCHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCC---cCCCCHHHHHHHHHHHHHHHcC-CCCCHHHHHHHHCCCHHHH
Confidence 35678999999999999999999999999998632 3556788899999999999866 6788899999999999999
Q ss_pred HHHHHHHHHhCCCceee---CHHHH
Q 028611 131 NFLELDFLFGLSFHLNV---TPNAF 152 (206)
Q Consensus 131 N~LE~~fL~lLdy~L~V---s~~~y 152 (206)
..+++.++..|++++.+ ++..|
T Consensus 87 ~~~~~~l~~~L~~~~~~~~~~p~~~ 111 (200)
T 1ais_B 87 GRSYRFIARNLNLTPKKLFVKPTDY 111 (200)
T ss_dssp HHHHHHHHHHTTCCTTTTCCCGGGG
T ss_pred HHHHHHHHHHhcccCCcCCCCHHHH
Confidence 99999999999999764 44444
No 18
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=95.55 E-value=0.014 Score=51.43 Aligned_cols=87 Identities=7% Similarity=-0.056 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhCCCCCCCcccHHHHHHHHHHHHhhhcCCCccccchhhhccCCCHHHHH
Q 028611 52 IQSYLERIFKYANCSPSCFIVAYVYLDRFVQRQPSLPINSFNVHRLLITSVMVAAKFLDDMYYNNAYYAKVGGISTIEMN 131 (206)
Q Consensus 52 i~~fl~rI~~~~~ls~~~~i~ALiYldRl~~~~~~~~l~~~n~~RL~ltalilAsK~~dD~~~sN~~wa~v~gvs~~eLN 131 (206)
...+|.++....+++..+.=.|..|..|+.... .+......-+..+|+.+|.|. ++...+-+..+.+.+++.++|.
T Consensus 129 a~~~I~~~~~~L~Lp~~v~d~A~~lyk~~~~~~---~~kgr~~~~vaaAclyiAcR~-e~~prtl~ei~~~~~v~~keIg 204 (345)
T 3k7a_M 129 AFAKITMLCDAAELPKIVKDCAKEAYKLCHDEK---TLKGKSMESIMAASILIGCRR-AEVARTFKEIQSLIHVKTKEFG 204 (345)
T ss_dssp HHHHHHHHHHHTTCCHHHHTHHHHHHHHHSSSC---SSCCCCSHHHHTTTTTTTSBT-TBSSCCHHHHHHSSSCCSHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC---cccCCcHHHHHHHHHHHHHHH-cCCCccHHHHHHHHCCCHHHHH
Confidence 457888999999999999999999999998753 234556778889999999994 5567888999999999999999
Q ss_pred HHHHHHHHhCC
Q 028611 132 FLELDFLFGLS 142 (206)
Q Consensus 132 ~LE~~fL~lLd 142 (206)
++++.+++.|+
T Consensus 205 r~~~~l~~~L~ 215 (345)
T 3k7a_M 205 KTLNIMKNILR 215 (345)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 99999999998
No 19
>1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B*
Probab=94.89 E-value=0.14 Score=40.85 Aligned_cols=91 Identities=13% Similarity=0.103 Sum_probs=74.9
Q ss_pred hhHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhCCCCCCCcccHHHHHHHHHHHHhhhcCCCccccchhhhccCCCHHH
Q 028611 50 ISIQSYLERIFKYANCSPSCFIVAYVYLDRFVQRQPSLPINSFNVHRLLITSVMVAAKFLDDMYYNNAYYAKVGGISTIE 129 (206)
Q Consensus 50 isi~~fl~rI~~~~~ls~~~~i~ALiYldRl~~~~~~~~l~~~n~~RL~ltalilAsK~~dD~~~sN~~wa~v~gvs~~e 129 (206)
+.-.+|+.|+.+..+++..+.-.|..++.+..... + ....++.-+..+|+-+|++..+ ...+.+.++.+.|++..+
T Consensus 106 ~~p~~~i~r~~~~L~l~~~v~~~A~~i~~~~~~~~--~-~~gr~P~~iAaAaly~A~~~~~-~~~t~~ei~~~~~vs~~t 181 (200)
T 1ais_B 106 VKPTDYVNKFADELGLSEKVRRRAIEILDEAYKRG--L-TSGKSPAGLVAAALYIASLLEG-EKRTQREVAEVARVTEVT 181 (200)
T ss_dssp CCGGGGHHHHHHHHTCCHHHHHHHHHHHHHHHHTT--C-CTTSCHHHHHHHHHHHHHHHTT-CCCCHHHHHHHHTCCHHH
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcC--c-ccCCCHHHHHHHHHHHHHHHhC-CCCCHHHHHHHhCCCHHH
Confidence 56788999999999999999999998888887742 2 3567888899999999999876 445778999999999999
Q ss_pred HHHHHHHHHHhCCCc
Q 028611 130 MNFLELDFLFGLSFH 144 (206)
Q Consensus 130 LN~LE~~fL~lLdy~ 144 (206)
+..-=+++...++-+
T Consensus 182 i~~~~~~l~~~l~~~ 196 (200)
T 1ais_B 182 VRNRYKELVEKLKIK 196 (200)
T ss_dssp HHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHcCCC
Confidence 988888887777644
No 20
>1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A*
Probab=93.83 E-value=0.34 Score=38.91 Aligned_cols=87 Identities=8% Similarity=0.051 Sum_probs=68.1
Q ss_pred ChhHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhCCCCCCCcccHHHHHHHHHHHHhhhcCCCccccchhhhccCCCHH
Q 028611 49 SISIQSYLERIFKYANCSPSCFIVAYVYLDRFVQRQPSLPINSFNVHRLLITSVMVAAKFLDDMYYNNAYYAKVGGISTI 128 (206)
Q Consensus 49 ~isi~~fl~rI~~~~~ls~~~~i~ALiYldRl~~~~~~~~l~~~n~~RL~ltalilAsK~~dD~~~sN~~wa~v~gvs~~ 128 (206)
...-..|+.|+.+..+++..+.-.|..++.+..... + .....++-+..+|+-+|.+..+ ...+.+.|+.+.|++..
T Consensus 99 ~~~p~~~l~r~~~~l~l~~~~~~~A~~i~~~~~~~~--l-~~g~~P~~IAaAaiylA~~~~~-~~~~~~~i~~~~~v~~~ 174 (207)
T 1c9b_A 99 LITTGDFMSRFCSNLCLPKQVQMAATHIARKAVELD--L-VPGRSPISVAAAAIYMASQASA-EKRTQKEIGDIAGVADV 174 (207)
T ss_dssp CCCTHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTT--C-STTCCHHHHHHHHHHHHHHTSS-SCCCHHHHHHHHTCCHH
T ss_pred cCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcC--c-cCCCChHHHHHHHHHHHHHHHC-CCCCHHHHHHHhCCCHH
Confidence 345689999999999999988888888888776632 2 3567888999999999999875 45677899999999988
Q ss_pred HHHHHHHHHHH
Q 028611 129 EMNFLELDFLF 139 (206)
Q Consensus 129 eLN~LE~~fL~ 139 (206)
++..-=++++.
T Consensus 175 tI~~~~~~l~~ 185 (207)
T 1c9b_A 175 TIRQSYRLIYP 185 (207)
T ss_dssp HHHHHHHHHGG
T ss_pred HHHHHHHHHHH
Confidence 88765444443
No 21
>3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=93.60 E-value=0.17 Score=43.04 Aligned_cols=115 Identities=8% Similarity=-0.041 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhCCCCCCCcccHHHHHHHHHHHHhhhcCCCccccchhhhccCCCHHHHH
Q 028611 52 IQSYLERIFKYANCSPSCFIVAYVYLDRFVQRQPSLPINSFNVHRLLITSVMVAAKFLDDMYYNNAYYAKVGGISTIEMN 131 (206)
Q Consensus 52 i~~fl~rI~~~~~ls~~~~i~ALiYldRl~~~~~~~~l~~~n~~RL~ltalilAsK~~dD~~~sN~~wa~v~gvs~~eLN 131 (206)
-+.|+.++++..+.+..+.-.|..++....... ..-...++-+-.+|+.+|.+..+... ..|....|++.+++.
T Consensus 157 P~~fL~~~~~~l~~~~~~~~~A~~~l~~sl~t~---~~l~~~Ps~IAaAaiylA~~~~~~~~---~~W~~~~~~~~~~l~ 230 (285)
T 3rgf_B 157 PYRPLLQYVQDMGQEDMLLPLAWRIVNDTYRTD---LCLLYPPFMIALACLHVACVVQQKDA---RQWFAELSVDMEKIL 230 (285)
T ss_dssp SHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSS---HHHHSCHHHHHHHHHHHHHHHTTCCC---HHHHHTSCSCHHHHH
T ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHHHHHHccC---hhhccCHHHHHHHHHHHHHHHcCCCh---hhHHHHHCCCHHHHH
Confidence 368888888888888888888888887654421 12245678899999999999887532 578889999999999
Q ss_pred HHHHHHHHhCC-CceeeCHHHHHHHHHHHHHHHhhcCCCCCCcccc
Q 028611 132 FLELDFLFGLS-FHLNVTPNAFHTYCTYLQREMLLLQPPLNVAESS 176 (206)
Q Consensus 132 ~LE~~fL~lLd-y~L~Vs~~~y~~y~~~L~~~~~~~~~p~s~~~s~ 176 (206)
..-.+++.+.+ |+.+-..++.. .+.+-+..-.+||..|.++
T Consensus 231 ~~~~~il~ly~~~~~~~~~~~~~----~~~~k~~~~~~~~~~~~~~ 272 (285)
T 3rgf_B 231 EIIRVILKLYEQWKNFDERKEMA----TILSKMPKPKPPPNSEGEQ 272 (285)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHHH----HHHHHSCCCCCCC------
T ss_pred HHHHHHHHHHHhcccCchhhhHH----HHHHhCCCCCCCCCCCCCC
Confidence 99999998864 55544444443 2444455555666666654
No 22
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=87.69 E-value=2.6 Score=36.91 Aligned_cols=90 Identities=7% Similarity=-0.067 Sum_probs=74.6
Q ss_pred hHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhCCCCCCCcccHHHHHHHHHHHHhhhcCCCccccchhhhccCCCHHHH
Q 028611 51 SIQSYLERIFKYANCSPSCFIVAYVYLDRFVQRQPSLPINSFNVHRLLITSVMVAAKFLDDMYYNNAYYAKVGGISTIEM 130 (206)
Q Consensus 51 si~~fl~rI~~~~~ls~~~~i~ALiYldRl~~~~~~~~l~~~n~~RL~ltalilAsK~~dD~~~sN~~wa~v~gvs~~eL 130 (206)
.-...|.++....+++..+.=.|..+..|+.... .+...+..-+..+|+-+|.|. .+...+-+..+.+.+++.++|
T Consensus 128 ~a~~~I~~~~~~L~Lp~~v~d~A~~lyk~a~~~~---~~rGrs~e~vaAAclYiACR~-~~~prtl~eI~~~~~v~~kei 203 (345)
T 4bbr_M 128 AAFAKITMLCDAAELPKIVKDCAKEAYKLCHDEK---TLKGKSMESIMAASILIGCRR-AEVARTFKEIQSLIHVKTKEF 203 (345)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCT---TTTTCCHHHHHHHHHHHHHHH-TCCBCCHHHHHHHHTCCTTHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC---CccCCCHHHHHHHHHHHHHHh-cCCCccHHHHHHHhCCCHHHH
Confidence 4667889999999999999999999999988743 234567888899999999996 457788889999999999999
Q ss_pred HHHHHHHHHhCCCc
Q 028611 131 NFLELDFLFGLSFH 144 (206)
Q Consensus 131 N~LE~~fL~lLdy~ 144 (206)
.+..+.++..|+..
T Consensus 204 gr~~k~l~~~L~l~ 217 (345)
T 4bbr_M 204 GKTLNIMKNILRGK 217 (345)
T ss_dssp HHHHHHHHHCC---
T ss_pred HHHHHHHHHHhCcc
Confidence 99999999999864
No 23
>2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=85.67 E-value=7 Score=31.97 Aligned_cols=89 Identities=7% Similarity=-0.017 Sum_probs=64.7
Q ss_pred hHHHHHHHHHHHcCCCh----HHHHHHHHHHHHHhhhCCCCCCCcccHHHHHHHHHHHHhhhcCCC-c-----cccchhh
Q 028611 51 SIQSYLERIFKYANCSP----SCFIVAYVYLDRFVQRQPSLPINSFNVHRLLITSVMVAAKFLDDM-Y-----YNNAYYA 120 (206)
Q Consensus 51 si~~fl~rI~~~~~ls~----~~~i~ALiYldRl~~~~~~~~l~~~n~~RL~ltalilAsK~~dD~-~-----~sN~~wa 120 (206)
+-+.|+.++++..+.+. .+.-.|..+++...... ..-...+.-+-++|+.+|.+..+-. . .....|-
T Consensus 150 ~P~~fl~~~~~~l~~~~~~~~~~~~~A~~l~~~s~~~~---~~l~~~Ps~IAaAai~lA~~~~~~~~~~~~~~~~~~~W~ 226 (258)
T 2i53_A 150 HPYQFLLKYAKQLKGDKNKIQKLVQMAWTFVNDSLCTT---LSLQWEPEIIAVAVMYLAGRLCKFEIQEWTSKPMYRRWW 226 (258)
T ss_dssp CHHHHHHHHHHTBCSCHHHHHHHHHHHHHHHHHHTTTT---GGGTSCHHHHHHHHHHHHHHHHTCCGGGGBSSCCSSCGG
T ss_pred ChHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHcCC---chhccChHHHHHHHHHHHHHHhCCCCCccccCCCcccHH
Confidence 35789999999998887 46667777777665422 2234677889999999999987642 2 1233565
Q ss_pred hc--cCCCHHHHHHHHHHHHHhCC
Q 028611 121 KV--GGISTIEMNFLELDFLFGLS 142 (206)
Q Consensus 121 ~v--~gvs~~eLN~LE~~fL~lLd 142 (206)
.. .|++.+++...-.+++.+.+
T Consensus 227 ~~~~~~~~~~~l~~~~~~il~ly~ 250 (258)
T 2i53_A 227 EQFVQDVPVDVLEDICHQILDLYS 250 (258)
T ss_dssp GGTSSSCCHHHHHHHHHHHHTTTS
T ss_pred HHhccCCCHHHHHHHHHHHHHHHh
Confidence 54 49999999999999988764
No 24
>2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ...
Probab=81.67 E-value=2.7 Score=34.88 Aligned_cols=118 Identities=10% Similarity=0.036 Sum_probs=71.1
Q ss_pred hHHHHHHHHHHHcCCCh-HHHHHHHHHHHHHhhhCCCCCCCcccHHHHHHHHHHHHhhhcCCCccccchhhhccCCCHHH
Q 028611 51 SIQSYLERIFKYANCSP-SCFIVAYVYLDRFVQRQPSLPINSFNVHRLLITSVMVAAKFLDDMYYNNAYYAKVGGISTIE 129 (206)
Q Consensus 51 si~~fl~rI~~~~~ls~-~~~i~ALiYldRl~~~~~~~~l~~~n~~RL~ltalilAsK~~dD~~~sN~~wa~v~gvs~~e 129 (206)
+-.+|+.++++..+.+. .+.-+|..+++.-.. ... ........-+-.+|+.+|.+.++. ..++...+.++|++..+
T Consensus 138 tp~~fl~~~~~~l~~~~~~~~~~a~~l~e~sl~-~~~-~~~~~~Ps~iAaAai~lA~~~~~~-~~w~~~l~~~~g~~~~~ 214 (260)
T 2cch_B 138 TVNQFLTQYFLHQQPANCKVESLAMFLGELSLI-DAD-PYLKYLPSVIAGAAFHLALYTVTG-QSWPESLIRKTGYTLES 214 (260)
T ss_dssp CHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHH-CHH-HHTTSCHHHHHHHHHHHHHHHHHS-CCSCHHHHHHHCCCHHH
T ss_pred CHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHH-hHH-HHhCCCHHHHHHHHHHHHHHHhCC-CcchHHHHHHhCcCHHH
Confidence 57899999999999875 666677766665322 111 022345667888889999998775 33344455678999888
Q ss_pred HHHHHHHHHHhCCCce-eeCHHHHHHHHHHHHHHHhhcCCCCC
Q 028611 130 MNFLELDFLFGLSFHL-NVTPNAFHTYCTYLQREMLLLQPPLN 171 (206)
Q Consensus 130 LN~LE~~fL~lLdy~L-~Vs~~~y~~y~~~L~~~~~~~~~p~s 171 (206)
+...=..+...+.-.- .-....+.+|...-...++...+|..
T Consensus 215 i~~~~~~l~~~~~~~~~~~~~~i~~Ky~~~~~~~vs~~~~~~~ 257 (260)
T 2cch_B 215 LKPCLMDLHQTYLKAPQHAQQSIREKYKNSKYHGVSLLNPPET 257 (260)
T ss_dssp HHHHHHHHHHHHHHGGGSSCCHHHHHHTSGGGTTGGGSCCCSC
T ss_pred HHHHHHHHHHHHHhcCCcchHHHHHHHCcccccceeCCCCccc
Confidence 8776666655432110 01123455555544444444444443
No 25
>2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A
Probab=78.89 E-value=5.7 Score=32.69 Aligned_cols=88 Identities=7% Similarity=-0.040 Sum_probs=56.5
Q ss_pred hHHHHHHHHHHHcCCChHHH----HHHHHHHHHHhhhCCCCCCCcccHHHHHHHHHHHHhhhcCCCccc----cchhhhc
Q 028611 51 SIQSYLERIFKYANCSPSCF----IVAYVYLDRFVQRQPSLPINSFNVHRLLITSVMVAAKFLDDMYYN----NAYYAKV 122 (206)
Q Consensus 51 si~~fl~rI~~~~~ls~~~~----i~ALiYldRl~~~~~~~~l~~~n~~RL~ltalilAsK~~dD~~~s----N~~wa~v 122 (206)
+-.+|+.++++..+.+.... -.|..+++.-.. . ...-...+.-+-.+|+.+|.+...+..++ ....+.+
T Consensus 151 tp~~fl~~~~~~~~~~~~~~~~~~~~a~~ll~~~l~-d--~~~~~~~PS~iAaAai~la~~~~~~~~~~w~~~~~~l~~~ 227 (254)
T 2f2c_A 151 LATDFLIPLCNALKIPEDLWPQLYEAASTTICKALI-Q--PNIALLSPGLICAGGLLTTIETDNTNCRPWTCYLEDLSSI 227 (254)
T ss_dssp CGGGSHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTT-S--GGGTTSCHHHHHHHHHHHHHHTTCCSSCCTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHc-C--cchhccCHHHHHHHHHHHHHHhcCCCCCChHHHHHHHHHH
Confidence 35788888888888876642 234555543222 1 22334566778888899999986444332 4445567
Q ss_pred cCCCHHHHHHHHHHHHHhC
Q 028611 123 GGISTIEMNFLELDFLFGL 141 (206)
Q Consensus 123 ~gvs~~eLN~LE~~fL~lL 141 (206)
+|++..++...=..+..++
T Consensus 228 tg~~~~~l~~c~~~i~~~~ 246 (254)
T 2f2c_A 228 LNFSTNTVRTVKDQVSEAF 246 (254)
T ss_dssp HTCCHHHHHHHHHHHHHHH
T ss_pred HCcCHHHHHHHHHHHHHHH
Confidence 8999888877666666554
No 26
>2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B*
Probab=78.61 E-value=25 Score=28.63 Aligned_cols=89 Identities=9% Similarity=0.060 Sum_probs=64.7
Q ss_pred hHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhCCCCCCCcccHHHHHHHHHHHHhhhcCCCc-c--ccchhhhc--cCC
Q 028611 51 SIQSYLERIFKYANCSPSCFIVAYVYLDRFVQRQPSLPINSFNVHRLLITSVMVAAKFLDDMY-Y--NNAYYAKV--GGI 125 (206)
Q Consensus 51 si~~fl~rI~~~~~ls~~~~i~ALiYldRl~~~~~~~~l~~~n~~RL~ltalilAsK~~dD~~-~--sN~~wa~v--~gv 125 (206)
+-+.|+.++++..+.+....-.|..++........ . .-...+.-+-++|+.+|.++++-.. . ....|... .|+
T Consensus 145 ~P~~fl~~~~~~l~~~~~~~~~A~~~~~~sl~~~~-~-~l~~~Ps~IAaAai~lA~~~~~~~~p~~~~~~~W~~~~~~~~ 222 (257)
T 2ivx_A 145 HPHTDVVKCTQLVRASKDLAQTSYFMATNSLHLTT-F-CLQYKPTVIACVCIHLACKWSNWEIPVSTDGKHWWEYVDPTV 222 (257)
T ss_dssp CHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCC-G-GGTSCHHHHHHHHHHHHHHHHTCCCCCCTTCCCGGGGTCSSC
T ss_pred CcHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccc-H-HHcCCHHHHHHHHHHHHHHHhCCCCCCCCCCchHHHHhCCCC
Confidence 36789999999999998888888877765542221 1 1235677899999999999976331 1 23467764 378
Q ss_pred CHHHHHHHHHHHHHhC
Q 028611 126 STIEMNFLELDFLFGL 141 (206)
Q Consensus 126 s~~eLN~LE~~fL~lL 141 (206)
+.++|...-.+++...
T Consensus 223 ~~~~l~~~~~~i~~~~ 238 (257)
T 2ivx_A 223 TLELLDELTHEFLQIL 238 (257)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9999999999988764
No 27
>1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe}
Probab=75.32 E-value=5.5 Score=32.33 Aligned_cols=85 Identities=7% Similarity=-0.018 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhCCCCCCCcccHHHHHHHHHHHHhhhcCCCccccchhhhccCCCHHHHH
Q 028611 52 IQSYLERIFKYANCSPSCFIVAYVYLDRFVQRQPSLPINSFNVHRLLITSVMVAAKFLDDMYYNNAYYAKVGGISTIEMN 131 (206)
Q Consensus 52 i~~fl~rI~~~~~ls~~~~i~ALiYldRl~~~~~~~~l~~~n~~RL~ltalilAsK~~dD~~~sN~~wa~v~gvs~~eLN 131 (206)
-..|+.++++..+++....-.|..++....... ..-...+.-+-.+|+.+|.+..+...-....|- .|++.+++.
T Consensus 134 P~~~l~~~~~~~~~~~~~~~~A~~~l~~s~~~~---~~l~~~Ps~IAaAai~lA~~~~~~~~~~~~~~~--~~~~~~~i~ 208 (235)
T 1zp2_A 134 PYTSLEQAFHDGIINQKQLEFAWSIVNDSYASS---LCLMAHPHQLAYAALLISCCNDENTIPKLLDLI--KSTDAFKVI 208 (235)
T ss_dssp THHHHHHHHHTTSSCHHHHHHHHHHHHHHTTTT---GGGTSCHHHHHHHHHHHHHTSCTTHHHHHHHHC--CHHHHHHHH
T ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC---chhccCHHHHHHHHHHHHHHhcCCCCCCCcchh--hcCCHHHHH
Confidence 467888888888999998888888888765432 223467778999999999998754311111121 277777777
Q ss_pred HHHHHHHHhC
Q 028611 132 FLELDFLFGL 141 (206)
Q Consensus 132 ~LE~~fL~lL 141 (206)
..=.+++.+.
T Consensus 209 ~~~~~i~~ly 218 (235)
T 1zp2_A 209 LCVQRIISIY 218 (235)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7766666653
No 28
>2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B*
Probab=74.53 E-value=6 Score=32.97 Aligned_cols=85 Identities=11% Similarity=0.012 Sum_probs=59.3
Q ss_pred hHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhCCCCCCCcccHHHHHHHHHHHHhhhcCCCccccchhhhccCCCHHHH
Q 028611 51 SIQSYLERIFKYANCSPSCFIVAYVYLDRFVQRQPSLPINSFNVHRLLITSVMVAAKFLDDMYYNNAYYAKVGGISTIEM 130 (206)
Q Consensus 51 si~~fl~rI~~~~~ls~~~~i~ALiYldRl~~~~~~~~l~~~n~~RL~ltalilAsK~~dD~~~sN~~wa~v~gvs~~eL 130 (206)
+-.+|+.++.+..+++....-+|..+++...... . .....+.-+-.+|+.+|.+.++.. .++...+.++|++..++
T Consensus 137 tp~~fl~~~~~~~~~~~~~~~~a~~l~e~sl~~~-~--~~~~~Ps~iAaAai~lA~~~l~~~-~w~~~l~~~tg~~~~~l 212 (269)
T 2b9r_A 137 LPLHFLRRASKIGEVDVEQHTLAKYLMELTMLDY-D--MVHFPPSQIAAGAFSLALKILDNG-EWTPTLQHYLSYTEESL 212 (269)
T ss_dssp CHHHHHHHHHHSSCCCHHHHHHHHHHHHHGGGCG-G--GSSSCTTHHHHHHHHHHHHHHTCC-CSCTTHHHHSCCCSSTT
T ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhh-h--hhcCCHHHHHHHHHHHHHHHhCCC-CCCHHHHHHHCCCHHHH
Confidence 4678999999999999888888887777655422 2 234556678899999999988765 34455566788886666
Q ss_pred HHHHHHHHH
Q 028611 131 NFLELDFLF 139 (206)
Q Consensus 131 N~LE~~fL~ 139 (206)
...=..++.
T Consensus 213 ~~~~~~l~~ 221 (269)
T 2b9r_A 213 LPVMQHLAK 221 (269)
T ss_dssp TTHHHHHHH
T ss_pred HHHHHHHHH
Confidence 544444433
No 29
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=72.03 E-value=0.78 Score=40.13 Aligned_cols=89 Identities=7% Similarity=-0.065 Sum_probs=0.0
Q ss_pred CCChhHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhCCCCCCCcccHHHHHHHHHHHHhhhcCCCccccchhhhccCCC
Q 028611 47 RPSISIQSYLERIFKYANCSPSCFIVAYVYLDRFVQRQPSLPINSFNVHRLLITSVMVAAKFLDDMYYNNAYYAKVGGIS 126 (206)
Q Consensus 47 ~P~isi~~fl~rI~~~~~ls~~~~i~ALiYldRl~~~~~~~~l~~~n~~RL~ltalilAsK~~dD~~~sN~~wa~v~gvs 126 (206)
.|.+.-.+||.|+.+..+++..+.-.|..++.+..... ......+.-+..+|+.+|++.++. ..+.+.|+++.|++
T Consensus 230 ~~~~~p~~~i~Rf~~~L~l~~~v~~~A~~i~~~~~~~~---l~~Gr~P~~IAaAaIylAa~~~~~-~~t~~eIa~~~~Vs 305 (345)
T 3k7a_M 230 MSGAQNLTYIPRFCSHLGLPMQVTTSAEYTAKKCKEIK---EIAGKSPITIAVVSIYLNILLFQI-PITAAKVGQTLQVT 305 (345)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhc---hhcCCCHHHHHHHHHHHHHHHHCC-CCCHHHHHHHHCCC
Confidence 34456679999999999999888888888888776632 234567788999999999998764 34688999999998
Q ss_pred HHHHHHHHHHHHH
Q 028611 127 TIEMNFLELDFLF 139 (206)
Q Consensus 127 ~~eLN~LE~~fL~ 139 (206)
...|..-=.+++.
T Consensus 306 e~TIr~~ykel~~ 318 (345)
T 3k7a_M 306 EGTIKSGYKILYE 318 (345)
T ss_dssp -------------
T ss_pred HHHHHHHHHHHHH
Confidence 8777644334433
No 30
>3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=70.32 E-value=11 Score=32.23 Aligned_cols=89 Identities=11% Similarity=0.019 Sum_probs=55.3
Q ss_pred hHHHHHHHHHHHcCCChHH----HHHHHHHHHHHhhhCCCCCCCcccHHHHHHHHHHHHhhhcCCCccccchh----hhc
Q 028611 51 SIQSYLERIFKYANCSPSC----FIVAYVYLDRFVQRQPSLPINSFNVHRLLITSVMVAAKFLDDMYYNNAYY----AKV 122 (206)
Q Consensus 51 si~~fl~rI~~~~~ls~~~----~i~ALiYldRl~~~~~~~~l~~~n~~RL~ltalilAsK~~dD~~~sN~~w----a~v 122 (206)
+-.+|+.++++..+.+... .-.|..+++--.. .. ..-.....-+-.+|+.+|.+.++....+...| +++
T Consensus 170 tp~~fl~~~l~~l~~~~~~~~~~~~~a~~~l~lsl~-d~--~~l~~~PS~IAaAai~lA~~~l~~~~~w~~~w~~~L~~~ 246 (306)
T 3g33_B 170 IAHDFLAFILHRLSLPRDRQALVKKHAQTFLALCAT-DY--TFAMYPPSMIATGSIGAAVQGLGACSMSGDELTELLAGI 246 (306)
T ss_dssp CGGGGHHHHHHTSSCCTTTHHHHHHHHHHHHHHHHH-CG--GGTTSCHHHHHHHHHHHHHHTCC---CCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHh-hh--hhccCCHHHHHHHHHHHHHHHhcCCCCchhhHHHHHHHH
Confidence 3567888888887776442 2344455553222 21 22345667788899999999998776665555 456
Q ss_pred cCCCHHHHHHHHHHHHHhCC
Q 028611 123 GGISTIEMNFLELDFLFGLS 142 (206)
Q Consensus 123 ~gvs~~eLN~LE~~fL~lLd 142 (206)
.|++..+|...-..++.++.
T Consensus 247 tg~~~~~l~~c~~~I~~l~~ 266 (306)
T 3g33_B 247 TGTEVDCLRACQEQIEAALR 266 (306)
T ss_dssp HTCCHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHHH
Confidence 78988888776666655443
No 31
>2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C
Probab=69.07 E-value=13 Score=32.50 Aligned_cols=89 Identities=9% Similarity=0.044 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhCCCCCCCcccHHHHHHHHHHHHhhhcCCC-cc--ccchhhhcc--CCC
Q 028611 52 IQSYLERIFKYANCSPSCFIVAYVYLDRFVQRQPSLPINSFNVHRLLITSVMVAAKFLDDM-YY--NNAYYAKVG--GIS 126 (206)
Q Consensus 52 i~~fl~rI~~~~~ls~~~~i~ALiYldRl~~~~~~~~l~~~n~~RL~ltalilAsK~~dD~-~~--sN~~wa~v~--gvs 126 (206)
-+.||.++++..+.+....-.|..++....... .+ .-....+-+-++|+.+|.++++-. .. ....|..+. +++
T Consensus 153 P~~fL~~~~~~l~~~~~l~~~A~~ll~~sl~~t-~l-~l~y~Ps~IAaAAI~lA~~~l~~~~p~~~~~~~W~~~~~~~vt 230 (358)
T 2pk2_A 153 PHTHVVKCTQLVRASKDLAQTSYFMATNSLHLT-TF-SLQYTPPVVACVCIHLACKWSNWEIPVSTDGKHWWEYVDATVT 230 (358)
T ss_dssp TTHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTS-CG-GGTSCHHHHTTTTTTTHHHHTTCCCCCCSSSCCTTTTSCSSCC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-cc-hhccCHHHHHHHHHHHHHHHhCCCCCCCccccchHHHHhccCC
Confidence 457888888888888888888887776554212 11 123567788889999999998633 11 235677764 789
Q ss_pred HHHHHHHHHHHHHhCC
Q 028611 127 TIEMNFLELDFLFGLS 142 (206)
Q Consensus 127 ~~eLN~LE~~fL~lLd 142 (206)
.++|...-.+++.+++
T Consensus 231 ~~~l~~i~~~il~~y~ 246 (358)
T 2pk2_A 231 LELLDELTHEFLQILE 246 (358)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999998874
No 32
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=64.93 E-value=1.3 Score=38.79 Aligned_cols=91 Identities=7% Similarity=-0.077 Sum_probs=0.0
Q ss_pred CCChhHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhhCCCCCCCcccHHHHHHHHHHHHhhhcCCCccccchhhhccCCC
Q 028611 47 RPSISIQSYLERIFKYANCSPSCFIVAYVYLDRFVQRQPSLPINSFNVHRLLITSVMVAAKFLDDMYYNNAYYAKVGGIS 126 (206)
Q Consensus 47 ~P~isi~~fl~rI~~~~~ls~~~~i~ALiYldRl~~~~~~~~l~~~n~~RL~ltalilAsK~~dD~~~sN~~wa~v~gvs 126 (206)
.|.+...+||.|+....+++..+.-.|.-++.+..... ......+.-+..+|+.+|+.+.+. ..+.+.-+++.|++
T Consensus 230 ~~~~~p~~~i~Rf~s~L~l~~~v~~~A~~i~~~~~~~~---i~~GR~P~~IAAAaIylAa~l~g~-~~t~~eIa~v~~Vs 305 (345)
T 4bbr_M 230 MSGAQNLTYIPRFCSHLGLPMQVTTSAEYTAKKCKEIK---EIAGKSPITIAVVSIYLNILLFQI-PITAAKVGQTLQVT 305 (345)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcc---cccCCChHHHHHHHHHHHHHHhCC-CCCHHHHHHHHCCC
Confidence 56678889999999999999999888988888877632 235667778899999999998764 45788899999998
Q ss_pred HHHHHHHHHHHHHhC
Q 028611 127 TIEMNFLELDFLFGL 141 (206)
Q Consensus 127 ~~eLN~LE~~fL~lL 141 (206)
...+..-=.+|+..+
T Consensus 306 e~TIr~rykel~~~~ 320 (345)
T 4bbr_M 306 EGTIKSGYKILYEHR 320 (345)
T ss_dssp ---------------
T ss_pred HHHHHHHHHHHHHHH
Confidence 777765544444443
No 33
>1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1
Probab=63.80 E-value=28 Score=28.46 Aligned_cols=88 Identities=5% Similarity=-0.153 Sum_probs=54.1
Q ss_pred hHHHHHHHHHHHcCCChHH----HHHHHHHHHHHhhhCCCCCCCcccHHHHHHHHHHHHhhhcCCC-----ccccchhhh
Q 028611 51 SIQSYLERIFKYANCSPSC----FIVAYVYLDRFVQRQPSLPINSFNVHRLLITSVMVAAKFLDDM-----YYNNAYYAK 121 (206)
Q Consensus 51 si~~fl~rI~~~~~ls~~~----~i~ALiYldRl~~~~~~~~l~~~n~~RL~ltalilAsK~~dD~-----~~sN~~wa~ 121 (206)
+-.+|+.++++..+.+... .-.|..+++.-.. . .......+.-+-.+|+.+|.+.++-. ..+....++
T Consensus 150 tp~~fl~~~~~~~~~~~~~~~~~~~~a~~~le~~l~-d--~~~~~~~PS~iAaAai~lA~~~l~~~~~~~~~~w~~~l~~ 226 (257)
T 1g3n_C 150 LATDVTSFLLLKLVGGSQHLDFWHHEVNTLITKALV-D--PLTGSLPASIISAAGCALLVPANVIPQDTHSGGVVPQLAS 226 (257)
T ss_dssp CHHHHHHHHHHHHSCSSTTHHHHHHHHHHHHHHHHT-S--TTGGGSCHHHHHHHHHHHHCCGGGSCC-----CHHHHHHH
T ss_pred CHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHh-C--cchhCcCHHHHHHHHHHHHHHHhCCCcccchhhHHHHHHH
Confidence 5789999999888887654 2335555553322 2 22345567778888899999887621 122233344
Q ss_pred ccCCCHHHHHHHHHHHHHhC
Q 028611 122 VGGISTIEMNFLELDFLFGL 141 (206)
Q Consensus 122 v~gvs~~eLN~LE~~fL~lL 141 (206)
++|++..++...=..+..++
T Consensus 227 ~t~~~~~~l~~c~~~i~~l~ 246 (257)
T 1g3n_C 227 ILGCDVSVLQAAVEQILTSV 246 (257)
T ss_dssp HHTCCHHHHHHHHHHHHHHH
T ss_pred HHCcCHHHHHHHHHHHHHHH
Confidence 57888777766655555443
No 34
>2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A
Probab=51.27 E-value=52 Score=27.04 Aligned_cols=89 Identities=10% Similarity=0.006 Sum_probs=54.1
Q ss_pred hHHHHHHHHHHHcCCChHHH----HHHHHHHHHHhhhCCCCCCCcccHHHHHHHHHHHHhhhcC----CCccccch----
Q 028611 51 SIQSYLERIFKYANCSPSCF----IVAYVYLDRFVQRQPSLPINSFNVHRLLITSVMVAAKFLD----DMYYNNAY---- 118 (206)
Q Consensus 51 si~~fl~rI~~~~~ls~~~~----i~ALiYldRl~~~~~~~~l~~~n~~RL~ltalilAsK~~d----D~~~sN~~---- 118 (206)
+-.+|+.++++..+.+.... -.|..+++. .... .........-+-.+|+.+|.+.++ +...+...
T Consensus 156 tp~~fl~~~~~~l~~~~~~~~~~~~~a~~~l~~-~~~d--~~~~~~~PS~iAaAai~lA~~~l~~~~~~~~~w~~~~~~~ 232 (271)
T 2w96_A 156 TPHDFIEHFLSKMPEAEENKQIIRKHAQTFVAL-CATD--VKFISNPPSMVAAGSVVAAVQGLNLRSPNNFLSYYRLTRF 232 (271)
T ss_dssp CHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH-HHTS--THHHHSCHHHHHHHHHHHHHHHHHHHSTTSCGGGTTHHHH
T ss_pred CHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHH-HHhh--hhhhccCHHHHHHHHHHHHHHHhCcCCCCCCCcHHHHHHH
Confidence 58899999999999887653 134445542 2221 122345666788888888888764 22333332
Q ss_pred hhhccCCCHHHHHHHHHHHHHhCC
Q 028611 119 YAKVGGISTIEMNFLELDFLFGLS 142 (206)
Q Consensus 119 wa~v~gvs~~eLN~LE~~fL~lLd 142 (206)
.++++|++..++...=..++.+++
T Consensus 233 l~~~~~v~~~~l~~c~~~i~~l~~ 256 (271)
T 2w96_A 233 LSRVIKCDPDCLRACQEQIEALLE 256 (271)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHCcCHHHHHHHHHHHHHHHH
Confidence 234578887777666555555543
No 35
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=25.97 E-value=41 Score=22.62 Aligned_cols=44 Identities=14% Similarity=0.022 Sum_probs=32.2
Q ss_pred cCCCccccchhhhccCCCHHHHHHHHHHHHHhCCCceeeCHHHHHHHHHHH
Q 028611 109 LDDMYYNNAYYAKVGGISTIEMNFLELDFLFGLSFHLNVTPNAFHTYCTYL 159 (206)
Q Consensus 109 ~dD~~~sN~~wa~v~gvs~~eLN~LE~~fL~lLdy~L~Vs~~~y~~y~~~L 159 (206)
.....++....|+..|++...++.+|.. +-..+.+.....+..+
T Consensus 18 r~~~glsq~~lA~~~gis~~~is~~e~G-------~~~p~~~~l~~ia~~l 61 (94)
T 2kpj_A 18 IAKSEKTQLEIAKSIGVSPQTFNTWCKG-------IAIPRMGKVQALADYF 61 (94)
T ss_dssp HTTSSSCHHHHHHHHTCCHHHHHHHHTT-------SCCCCHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHCcCHHHHHHHHhC-------CCCCCHHHHHHHHHHH
Confidence 4556678888999999999999999873 2334666666666554
No 36
>1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1
Probab=23.53 E-value=3.1e+02 Score=22.50 Aligned_cols=77 Identities=18% Similarity=0.135 Sum_probs=44.7
Q ss_pred hHHHHHHHHHHHcCCC-----------hHHHHHHHHHHHHHhhhCCCCCCCcccHHHHHHHHHHHHhhhcCCCccccchh
Q 028611 51 SIQSYLERIFKYANCS-----------PSCFIVAYVYLDRFVQRQPSLPINSFNVHRLLITSVMVAAKFLDDMYYNNAYY 119 (206)
Q Consensus 51 si~~fl~rI~~~~~ls-----------~~~~i~ALiYldRl~~~~~~~~l~~~n~~RL~ltalilAsK~~dD~~~sN~~w 119 (206)
+-.+|+.++++..+++ ...+..+..+++.-.. ..+ .....+.-+-.+|+.+|.. .+.|
T Consensus 150 tp~~fL~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~llelsl~-d~~--~l~~~PS~iAaAai~la~~--------~~~l 218 (283)
T 1w98_B 150 TIVSWLNVYMQVAYLNDLHEVLLPQYPQQIFIQIAELLDLCVL-DVD--CLEFPYGILAASALYHFSS--------SELM 218 (283)
T ss_dssp CHHHHHHHHHHHHTCCSSCCSSSCCSCHHHHHHHHHHHHHHHH-SGG--GGGSCHHHHHHHHHHHTSC--------HHHH
T ss_pred CHHHHHHHHHHHhccCchhhHHHHhhhHHHHHHHHHHHHHHHh-hhh--hhcCCHHHHHHHHHHHHHC--------hHHH
Confidence 4778888888766543 2334444444443322 111 2234455566777767642 5678
Q ss_pred hhccCCCHHHHHHHHHHHH
Q 028611 120 AKVGGISTIEMNFLELDFL 138 (206)
Q Consensus 120 a~v~gvs~~eLN~LE~~fL 138 (206)
..++|++..++...-..++
T Consensus 219 ~~~tg~~~~~i~~c~~~l~ 237 (283)
T 1w98_B 219 QKVSGYQWCDIENCVKWMV 237 (283)
T ss_dssp HHHSCCCHHHHHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHH
Confidence 8889998888766544443
No 37
>1dlw_A Hemoglobin; oxygen storage/transport complex; HET: HEM; 1.54A {Paramecium caudatum} SCOP: a.1.1.1 PDB: 1uvy_A*
Probab=20.89 E-value=63 Score=22.79 Aligned_cols=27 Identities=15% Similarity=0.096 Sum_probs=22.7
Q ss_pred eeeCHHHHHHHHHHHHHHHhhcCCCCC
Q 028611 145 LNVTPNAFHTYCTYLQREMLLLQPPLN 171 (206)
Q Consensus 145 L~Vs~~~y~~y~~~L~~~~~~~~~p~s 171 (206)
+.|++++|+.|...+...+...+.|+.
T Consensus 71 ~~I~~~~f~~wl~~~~~al~~~~~~~~ 97 (116)
T 1dlw_A 71 MGVSNAQFTTVIGHLRSALTGAGVAAA 97 (116)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred CCcCHHHHHHHHHHHHHHHHHcCcCHH
Confidence 469999999999999999988776654
No 38
>1zs4_A Regulatory protein CII; helix-turn-helix, transcription activator, transcription-DNA; HET: DNA; 1.70A {Enterobacteria phage lambda} SCOP: a.35.1.9
Probab=20.62 E-value=1.3e+02 Score=20.97 Aligned_cols=47 Identities=13% Similarity=0.141 Sum_probs=32.4
Q ss_pred cccchhhhccCCCHHHHHHHHHH-------HHHhCCCceeeCHHHHHHHHHHHHHH
Q 028611 114 YNNAYYAKVGGISTIEMNFLELD-------FLFGLSFHLNVTPNAFHTYCTYLQRE 162 (206)
Q Consensus 114 ~sN~~wa~v~gvs~~eLN~LE~~-------fL~lLdy~L~Vs~~~y~~y~~~L~~~ 162 (206)
.+++..|+..|++...+++|... +|..|+|+ |-++++..+.+.+-..
T Consensus 25 ~gQ~~vAe~~GvdeStISR~k~~~~~~~~~lLa~Lglk--vv~~e~~~~~k~~~~~ 78 (83)
T 1zs4_A 25 LGTEKTAEAVGVDKSQISRWKRDWIPKFSMLLAVLEWG--VVDDDMARLARQVAAI 78 (83)
T ss_dssp HCHHHHHHHHTSCHHHHHHHHHHTHHHHHHHHHHHTTC--CCHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHhCCCHHHHhhhhhhHHHHHHHHHHHhccC--CCcHHHHHHHHHHHHH
Confidence 35678889999999999997544 45666766 4455777666655443
Done!