BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028613
(206 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3CMG|A Chain A, Crystal Structure Of Putative Beta-Galactosidase From
Bacteroides Fragilis
Length = 667
Score = 34.3 bits (77), Expect = 0.053, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 94 EEECISVVDYYVPLFFL--EISTIQPADFCQKFNLCQRVAIFSSQLR 138
+E CIS +DY P +L E+ + Q A C K NL R A +++L+
Sbjct: 149 DETCISPLDYASPGVYLVQEVVSPQEAKVCAKVNLSNRAADGTAELQ 195
>pdb|4DDJ|A Chain A, Crystal Structure Of Saposin A In Complex With
Lauryldimethylamine-N- Oxide (Ldao)
Length = 83
Score = 33.5 bits (75), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 18/77 (23%), Positives = 32/77 (41%), Gaps = 4/77 (5%)
Query: 56 CTLCEEFTAKAVDYFAENKTQTEIINXXXXX--XXXXXXFEEECISVVDYYVPLFF--LE 111
C +C++ A D +N T+ EI+ C +VD Y+P+ ++
Sbjct: 6 CDICKDVVTAAGDMLKDNATEEEILVYLEKTCDWLPKPNMSASCKEIVDSYLPVILDIIK 65
Query: 112 ISTIQPADFCQKFNLCQ 128
+P + C NLC+
Sbjct: 66 GEMSRPGEVCSALNLCE 82
>pdb|2DOB|A Chain A, Crystal Structure Of Human Saposin A
Length = 83
Score = 32.0 bits (71), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 18/77 (23%), Positives = 32/77 (41%), Gaps = 4/77 (5%)
Query: 56 CTLCEEFTAKAVDYFAENKTQTEIINXXXXX--XXXXXXFEEECISVVDYYVPLFF--LE 111
C +C++ A D +N T+ EI+ C +VD Y+P+ ++
Sbjct: 6 CDICKDVVTAAGDXLKDNATEEEILVYLEKTCDWLPKPNXSASCKEIVDSYLPVILDIIK 65
Query: 112 ISTIQPADFCQKFNLCQ 128
+P + C NLC+
Sbjct: 66 GEXSRPGEVCSALNLCE 82
>pdb|2Z9A|A Chain A, Crystal Structure Of Human Saposin C Dimer In Open
Conformation
pdb|2Z9A|B Chain B, Crystal Structure Of Human Saposin C Dimer In Open
Conformation
Length = 88
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 30/76 (39%), Gaps = 2/76 (2%)
Query: 56 CTLCEEFTAKAVDYFAENKTQTEIINXXXXX-XXXXXXFEEECISVVDYY-VPLFFLEIS 113
C +CE + NKT+ EI++ EEC VVD Y + + +
Sbjct: 7 CEVCEFLVKEVTKLIDNNKTEKEILDAFDKMCSKLPKSLSEECQEVVDTYGSSILSILLE 66
Query: 114 TIQPADFCQKFNLCQR 129
+ P C +LC R
Sbjct: 67 EVSPELVCSMLHLCSR 82
>pdb|1Z1N|X Chain X, Crystal Structure Of The Sixteen Heme Cytochrome From
Desulfovibrio Gigas
Length = 560
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 19/27 (70%), Gaps = 2/27 (7%)
Query: 136 QLRED-SCELCHHTVSEC-KKLVFEYG 160
Q++ED SC+ CHHT E KKLV+ G
Sbjct: 171 QVKEDESCKACHHTYDEAQKKLVYAKG 197
>pdb|1M12|A Chain A, Nmr Solution Structure Of Human Saposin C
pdb|1SN6|A Chain A, Nmr Solution Structure Of Human Saposin C In Sds Micelles
Length = 84
Score = 27.3 bits (59), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 29/75 (38%), Gaps = 2/75 (2%)
Query: 56 CTLCEEFTAKAVDYFAENKTQTEIINXXXXX-XXXXXXFEEECISVVDYY-VPLFFLEIS 113
C +CE + NKT+ EI++ EEC VVD Y + + +
Sbjct: 5 CEVCEFLVKEVTKLIDNNKTEKEILDAFDKMCSKLPKSLSEECQEVVDTYGSSILSILLE 64
Query: 114 TIQPADFCQKFNLCQ 128
+ P C +LC
Sbjct: 65 EVSPELVCSMLHLCS 79
>pdb|2GTG|A Chain A, Crystal Structure Of Human Saposin C
Length = 83
Score = 26.9 bits (58), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 29/75 (38%), Gaps = 2/75 (2%)
Query: 56 CTLCEEFTAKAVDYFAENKTQTEIINXXXXX-XXXXXXFEEECISVVDYY-VPLFFLEIS 113
C +CE + NKT+ EI++ EEC VVD Y + + +
Sbjct: 7 CEVCEFLVKEVTKLIDNNKTEKEILDAFDKMCSKLPKSLSEECQEVVDTYGSSILSILLE 66
Query: 114 TIQPADFCQKFNLCQ 128
+ P C +LC
Sbjct: 67 EVSPELVCSMLHLCS 81
>pdb|2QYP|A Chain A, Orthorhombic Crystal Structure Of Human Saposin C Dimer In
Open Conformation
pdb|2QYP|B Chain B, Orthorhombic Crystal Structure Of Human Saposin C Dimer In
Open Conformation
Length = 91
Score = 26.9 bits (58), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 29/75 (38%), Gaps = 2/75 (2%)
Query: 56 CTLCEEFTAKAVDYFAENKTQTEIINXXXXX-XXXXXXFEEECISVVDYY-VPLFFLEIS 113
C +CE + NKT+ EI++ EEC VVD Y + + +
Sbjct: 8 CEVCEFLVKEVTKLIDNNKTEKEILDAFDKMCSKLPKSLSEECQEVVDTYGSSILSILLE 67
Query: 114 TIQPADFCQKFNLCQ 128
+ P C +LC
Sbjct: 68 EVSPELVCSMLHLCS 82
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.137 0.419
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,879,318
Number of Sequences: 62578
Number of extensions: 158316
Number of successful extensions: 412
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 408
Number of HSP's gapped (non-prelim): 16
length of query: 206
length of database: 14,973,337
effective HSP length: 94
effective length of query: 112
effective length of database: 9,091,005
effective search space: 1018192560
effective search space used: 1018192560
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 49 (23.5 bits)