Query 028613
Match_columns 206
No_of_seqs 173 out of 732
Neff 7.1
Searched_HMMs 46136
Date Fri Mar 29 14:14:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028613.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028613hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1340 Prosaposin [Lipid tran 99.9 3.4E-24 7.5E-29 177.9 10.3 136 51-188 34-208 (218)
2 smart00741 SapB Saposin (B) Do 99.5 3.3E-14 7.2E-19 98.1 6.4 73 55-127 2-76 (76)
3 KOG1340 Prosaposin [Lipid tran 99.0 3.9E-10 8.5E-15 94.1 6.2 81 51-131 125-207 (218)
4 PF03489 SapB_2: Saposin-like 98.9 2E-09 4.3E-14 64.6 4.4 32 152-183 4-35 (35)
5 PF05184 SapB_1: Saposin-like 98.8 5E-09 1.1E-13 64.1 2.4 38 54-91 2-39 (39)
6 PF03489 SapB_2: Saposin-like 98.7 8.4E-09 1.8E-13 61.9 2.7 34 94-127 1-35 (35)
7 smart00741 SapB Saposin (B) Do 98.5 1.9E-07 4E-12 64.0 5.4 32 152-183 45-76 (76)
8 KOG3770 Acid sphingomyelinase 94.3 0.059 1.3E-06 51.0 4.6 81 51-131 21-106 (577)
9 KOG4260 Uncharacterized conser 87.7 3.4 7.4E-05 36.0 8.0 79 52-130 26-134 (350)
10 KOG3782 Predicted membrane pro 75.9 3.3 7.1E-05 33.4 3.2 22 52-73 23-44 (189)
11 PF07172 GRP: Glycine rich pro 70.0 5.2 0.00011 29.2 2.9 24 1-24 1-28 (95)
12 PF10208 Armet: Degradation ar 60.6 3.6 7.8E-05 32.7 0.6 74 55-128 1-90 (154)
13 PF03058 Sar8_2: Sar8.2 family 56.3 13 0.00029 26.9 2.8 19 11-29 16-34 (93)
14 PHA03158 hypothetical protein; 55.4 36 0.00078 28.3 5.6 81 3-83 25-114 (273)
15 KOG4154 Arginine-rich protein 49.4 59 0.0013 25.5 5.6 73 52-124 28-111 (178)
16 PF15183 MRAP: Melanocortin-2 49.0 13 0.00029 26.5 1.9 19 4-22 49-67 (90)
17 PF13798 PCYCGC: Protein of un 47.4 39 0.00084 27.0 4.5 38 51-88 109-146 (158)
18 COG3088 CcmH Uncharacterized p 45.0 42 0.00092 26.7 4.3 31 60-90 64-94 (153)
19 KOG4052 Uncharacterized conser 44.2 39 0.00084 27.3 4.0 21 152-172 154-174 (190)
20 PRK10144 formate-dependent nit 42.6 58 0.0013 25.1 4.7 34 57-90 57-90 (126)
21 PF07172 GRP: Glycine rich pro 42.2 18 0.00039 26.4 1.7 23 10-34 6-28 (95)
22 PF05624 LSR: Lipolysis stimul 40.7 20 0.00042 22.8 1.5 11 7-17 13-23 (49)
23 PF11770 GAPT: GRB2-binding ad 39.5 20 0.00042 28.5 1.7 18 2-19 11-28 (158)
24 cd02962 TMX2 TMX2 family; comp 38.8 13 0.00027 29.4 0.5 22 51-72 54-75 (152)
25 PF08006 DUF1700: Protein of u 35.4 68 0.0015 25.6 4.3 49 75-125 2-51 (181)
26 TIGR03147 cyt_nit_nrfF cytochr 32.5 88 0.0019 24.1 4.3 33 57-89 57-89 (126)
27 PF06298 PsbY: Photosystem II 31.3 38 0.00083 20.3 1.6 19 1-19 1-20 (36)
28 KOG4063 Major epididymal secre 29.9 39 0.00085 26.9 2.0 18 1-18 1-20 (158)
29 CHL00196 psbY photosystem II p 25.5 57 0.0012 19.6 1.7 19 1-19 1-20 (36)
30 PRK13240 pbsY photosystem II p 25.4 59 0.0013 20.0 1.8 18 1-18 1-19 (40)
31 PF11052 Tr-sialidase_C: Trans 24.8 53 0.0011 18.1 1.3 11 8-18 12-22 (25)
32 TIGR03501 gamma_C_targ gammapr 22.5 75 0.0016 17.6 1.7 16 2-17 2-17 (26)
33 PF03918 CcmH: Cytochrome C bi 21.2 1.6E+02 0.0034 23.2 3.9 39 52-90 52-90 (148)
No 1
>KOG1340 consensus Prosaposin [Lipid transport and metabolism; Carbohydrate transport and metabolism]
Probab=99.91 E-value=3.4e-24 Score=177.95 Aligned_cols=136 Identities=40% Similarity=0.758 Sum_probs=120.9
Q ss_pred CCCCCChhHHHHHHHHHHHhccCCcHHHHHHHHHhhhcccCCcH-HHHHHHHHHhHHHHHHHH-hcCCcccccccccccC
Q 028613 51 RNENLCTLCEEFTAKAVDYFAENKTQTEIINLLHSSCSHLHSFE-EECISVVDYYVPLFFLEI-STIQPADFCQKFNLCQ 128 (206)
Q Consensus 51 ~~~~~C~~C~~vV~~v~~~l~~n~t~~~I~~~L~~~C~~lp~~~-~~C~~~V~~y~~~ii~~L-~~~~P~~IC~~l~lC~ 128 (206)
+....|++|+++|+.+..++.+| +.+|++.++..|..+|... .+|++||+.|++.|+..+ ++.+|+++|+.+++|+
T Consensus 34 r~~~~C~lCe~~v~~i~~~~~~~--~~~i~~~l~~~Ckkl~~~~~~~C~~fv~~y~~~ii~~l~~~~~P~~vC~~l~lC~ 111 (218)
T KOG1340|consen 34 RSAEVCELCELVVKRIQEYLDKN--QNELKEDLHAECKKLPKAIPFECLSFVDSYLDPIIKELESGTAPEDVCKKLNLCS 111 (218)
T ss_pred CccchhHHHHHHHHHHHHhhccc--HHHHHHHHHHHHHHhcccchHHHHHHHHHhhhHHHHHHHhccCHHHHHHHhccCC
Confidence 46889999999999999999998 8999999999999999433 499999999999999988 7799999999999999
Q ss_pred CCcc-----cccccccCcchhhHHHHHH--------------------------------HHHHHHHhHHHHHHHHHhhC
Q 028613 129 RVAI-----FSSQLREDSCELCHHTVSE--------------------------------CKKLVFEYGPLILANTEQFL 171 (206)
Q Consensus 129 ~~~~-----ls~~~~~~~C~~C~~~v~~--------------------------------C~~~V~~Y~p~ii~~l~~~~ 171 (206)
.... ..++..+..|+.|+.+|++ |++||++|+|.+|..+.+.+
T Consensus 112 ~~~~~~~~~~~~~~~~~~C~~C~~~V~~~~~~l~d~~~~k~~~~~~~~~~ck~l~~~~~~Ck~fV~~y~p~~i~~l~~~~ 191 (218)
T KOG1340|consen 112 ASAGPVSEVFASQPAAGECELCRETVTEADTKLQDKPKTKGKIVSLLLKSCKSLPNYEQKCKQFVHEYGPQLITLLEEGL 191 (218)
T ss_pred cccchhhhhhhhcccccccHHHHHHHHHHHHhcccchhHHHHHHHHHHhhccCCccchhHHHHHHHHhccHHHHHHHHhh
Confidence 5321 2334458999999999998 99999999999999999999
Q ss_pred ChHHHhhhcCCCCCCCC
Q 028613 172 ETTDICTILHACKSSTS 188 (206)
Q Consensus 172 ~P~~vC~~l~~C~~~~~ 188 (206)
+|++||+.+|.|++++.
T Consensus 192 ~p~~vC~~l~~C~~~~~ 208 (218)
T KOG1340|consen 192 DPHDVCTALGACPPAAS 208 (218)
T ss_pred CchhHHHHhhcCCcccc
Confidence 99999999999995443
No 2
>smart00741 SapB Saposin (B) Domains. Present in multiple copies in prosaposin and in pulmonary surfactant-associated protein B. In plant aspartic proteinases, a saposin domain is circularly permuted. This causes the prediction algorithm to predict two such domains, where only one is truly present.
Probab=99.51 E-value=3.3e-14 Score=98.07 Aligned_cols=73 Identities=36% Similarity=0.726 Sum_probs=70.4
Q ss_pred CChhHHHHHHHHHHHhccCCcHHHHHHHHHhhhcccC-CcHHHHHHHHHHhHHHHHHHH-hcCCccccccccccc
Q 028613 55 LCTLCEEFTAKAVDYFAENKTQTEIINLLHSSCSHLH-SFEEECISVVDYYVPLFFLEI-STIQPADFCQKFNLC 127 (206)
Q Consensus 55 ~C~~C~~vV~~v~~~l~~n~t~~~I~~~L~~~C~~lp-~~~~~C~~~V~~y~~~ii~~L-~~~~P~~IC~~l~lC 127 (206)
.|+.|+.+|+.+++++.++.+++.+.+.++++|+.+| .+...|+.+++.|+|.+++.+ ++.+|+.+|+.+|+|
T Consensus 2 ~C~~C~~~v~~~~~~~~~~~~~~~i~~~~~~~C~~~~~~~~~~C~~~v~~~~~~ii~~i~~~~~p~~iC~~l~~C 76 (76)
T smart00741 2 LCELCEDVVKQLENLLKDNKTEEEIKKALEKVCKKLPKSLSDQCKEFVDQYGPEIIDLLEQGLDPKDVCQKLGLC 76 (76)
T ss_pred cChHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHcCCC
Confidence 6999999999999999999999999999999999999 799999999999999999998 678899999999998
No 3
>KOG1340 consensus Prosaposin [Lipid transport and metabolism; Carbohydrate transport and metabolism]
Probab=99.03 E-value=3.9e-10 Score=94.06 Aligned_cols=81 Identities=28% Similarity=0.581 Sum_probs=73.4
Q ss_pred CCCCCChhHHHHHHHHHHHhcc-CCcHHHHHHHHHhhhcccCCcHHHHHHHHHHhHHHHHHHH-hcCCcccccccccccC
Q 028613 51 RNENLCTLCEEFTAKAVDYFAE-NKTQTEIINLLHSSCSHLHSFEEECISVVDYYVPLFFLEI-STIQPADFCQKFNLCQ 128 (206)
Q Consensus 51 ~~~~~C~~C~~vV~~v~~~l~~-n~t~~~I~~~L~~~C~~lp~~~~~C~~~V~~y~~~ii~~L-~~~~P~~IC~~l~lC~ 128 (206)
..+..|..|...|+++...|.+ +.++..+.....+.|..+|.+++.|++||+.|+|.++.++ +.++|+++|+.+|.|+
T Consensus 125 ~~~~~C~~C~~~V~~~~~~l~d~~~~k~~~~~~~~~~ck~l~~~~~~Ck~fV~~y~p~~i~~l~~~~~p~~vC~~l~~C~ 204 (218)
T KOG1340|consen 125 PAAGECELCRETVTEADTKLQDKPKTKGKIVSLLLKSCKSLPNYEQKCKQFVHEYGPQLITLLEEGLDPHDVCTALGACP 204 (218)
T ss_pred ccccccHHHHHHHHHHHHhcccchhHHHHHHHHHHhhccCCccchhHHHHHHHHhccHHHHHHHHhhCchhHHHHhhcCC
Confidence 4488999999999999999999 7788888888889998888888999999999999999998 8899999999999999
Q ss_pred CCc
Q 028613 129 RVA 131 (206)
Q Consensus 129 ~~~ 131 (206)
+..
T Consensus 205 ~~~ 207 (218)
T KOG1340|consen 205 PAA 207 (218)
T ss_pred ccc
Confidence 654
No 4
>PF03489 SapB_2: Saposin-like type B, region 2; InterPro: IPR008138 Saposins are small lysosomal proteins that serve as activators of various lysosomal lipid-degrading enzymes []. They probably act by isolating the lipid substrate from the membrane surroundings, thus making it more accessible to the soluble degradative enzymes. All mammalian saposins are synthesized as a single precursor molecule (prosaposin) which contains four Saposin-B domains, yielding the active saposins after proteolytic cleavage, and two Saposin-A domains that are removed in the activation reaction. The Saposin-B domains also occur in other proteins, many of them active in the lysis of membranes [, ].; PDB: 3BQQ_A 2RB3_B 2R0R_A 3BQP_A 2R1Q_A 1NKL_A 1L9L_A 1QDM_C 3RFI_A 4DDJ_A ....
Probab=98.91 E-value=2e-09 Score=64.62 Aligned_cols=32 Identities=41% Similarity=0.818 Sum_probs=31.5
Q ss_pred HHHHHHHhHHHHHHHHHhhCChHHHhhhcCCC
Q 028613 152 CKKLVFEYGPLILANTEQFLETTDICTILHAC 183 (206)
Q Consensus 152 C~~~V~~Y~p~ii~~l~~~~~P~~vC~~l~~C 183 (206)
|+.||++|+|.|++.+.+.++|+.||+.+|+|
T Consensus 4 C~~~V~~y~~~ii~~l~~~~~p~~iC~~i~~C 35 (35)
T PF03489_consen 4 CKNFVDQYGPQIIQLLEKQLDPQQICTKIGLC 35 (35)
T ss_dssp HHHHHHHHHHHHHHHHHTTSTHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHHHHhcCChHHHHHHcCCC
Confidence 99999999999999999999999999999998
No 5
>PF05184 SapB_1: Saposin-like type B, region 1; InterPro: IPR007856 Synonym(s):cerebroside sulphate activator, CSAct Saposin B is a small non-enzymatic glycoprotein required for the breakdown of cerebroside sulphates (sulphatides) in lysosomes. Saposin B contains three intramolecular disulphide bridges, exists as a dimer and is remarkably heat, protease, and pH stable. The crystal structure of human saposin B reveals an unusual shell-like dimer consisting of a monolayer of alpha-helices enclosing a large hydrophobic cavity. Although the secondary structure of saposin B is similar to that of the known monomeric members of the saposin-like superfamily, the helices are repacked into a different tertiary arrangement to form the homodimer. A comparison of the two forms of the saposin B dimer suggests that extraction of target lipids from membranes involves a conformational change that facilitates access to the inner cavity [].; GO: 0006629 lipid metabolic process; PDB: 1N69_C 1QDM_C 4DDJ_A 2DOB_A 1OF9_A 2Z9A_A 1M12_A 2GTG_A 1SN6_A 2QYP_B ....
Probab=98.75 E-value=5e-09 Score=64.12 Aligned_cols=38 Identities=26% Similarity=0.539 Sum_probs=36.6
Q ss_pred CCChhHHHHHHHHHHHhccCCcHHHHHHHHHhhhcccC
Q 028613 54 NLCTLCEEFTAKAVDYFAENKTQTEIINLLHSSCSHLH 91 (206)
Q Consensus 54 ~~C~~C~~vV~~v~~~l~~n~t~~~I~~~L~~~C~~lp 91 (206)
..|++|+++|+.++++|++|.|+++|+++|+++|+.+|
T Consensus 2 ~~C~~C~~~v~~i~~~l~~~~t~~~I~~~l~~~C~~lP 39 (39)
T PF05184_consen 2 DECDICKFVVKEIEKLLKNNKTEEEIKKALEKACNKLP 39 (39)
T ss_dssp HHHHHHHHHHHHHHHHHHSTCHHHHHHHHHHHHHTTSC
T ss_pred CcchHHHHHHHHHHHHHHcCccHHHHHHHHHHHHhhCc
Confidence 47999999999999999999999999999999999987
No 6
>PF03489 SapB_2: Saposin-like type B, region 2; InterPro: IPR008138 Saposins are small lysosomal proteins that serve as activators of various lysosomal lipid-degrading enzymes []. They probably act by isolating the lipid substrate from the membrane surroundings, thus making it more accessible to the soluble degradative enzymes. All mammalian saposins are synthesized as a single precursor molecule (prosaposin) which contains four Saposin-B domains, yielding the active saposins after proteolytic cleavage, and two Saposin-A domains that are removed in the activation reaction. The Saposin-B domains also occur in other proteins, many of them active in the lysis of membranes [, ].; PDB: 3BQQ_A 2RB3_B 2R0R_A 3BQP_A 2R1Q_A 1NKL_A 1L9L_A 1QDM_C 3RFI_A 4DDJ_A ....
Probab=98.72 E-value=8.4e-09 Score=61.86 Aligned_cols=34 Identities=32% Similarity=0.773 Sum_probs=32.1
Q ss_pred HHHHHHHHHHhHHHHHHHH-hcCCccccccccccc
Q 028613 94 EEECISVVDYYVPLFFLEI-STIQPADFCQKFNLC 127 (206)
Q Consensus 94 ~~~C~~~V~~y~~~ii~~L-~~~~P~~IC~~l~lC 127 (206)
+++|+.+|++|+|.+++.+ ++.+|+.||+.+|+|
T Consensus 1 ~~~C~~~V~~y~~~ii~~l~~~~~p~~iC~~i~~C 35 (35)
T PF03489_consen 1 SDECKNFVDQYGPQIIQLLEKQLDPQQICTKIGLC 35 (35)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSTHHHHHHHTTSS
T ss_pred CcHHHHHHHHHHHHHHHHHHhcCChHHHHHHcCCC
Confidence 4789999999999999998 889999999999998
No 7
>smart00741 SapB Saposin (B) Domains. Present in multiple copies in prosaposin and in pulmonary surfactant-associated protein B. In plant aspartic proteinases, a saposin domain is circularly permuted. This causes the prediction algorithm to predict two such domains, where only one is truly present.
Probab=98.53 E-value=1.9e-07 Score=63.98 Aligned_cols=32 Identities=44% Similarity=0.812 Sum_probs=31.2
Q ss_pred HHHHHHHhHHHHHHHHHhhCChHHHhhhcCCC
Q 028613 152 CKKLVFEYGPLILANTEQFLETTDICTILHAC 183 (206)
Q Consensus 152 C~~~V~~Y~p~ii~~l~~~~~P~~vC~~l~~C 183 (206)
|+.+|++|+|.+++.+.+..+|+.+|+.+|+|
T Consensus 45 C~~~v~~~~~~ii~~i~~~~~p~~iC~~l~~C 76 (76)
T smart00741 45 CKEFVDQYGPEIIDLLEQGLDPKDVCQKLGLC 76 (76)
T ss_pred HHHHHHHHHHHHHHHHHhCCCHHHHHHHcCCC
Confidence 99999999999999999999999999999998
No 8
>KOG3770 consensus Acid sphingomyelinase and PHM5 phosphate metabolism protein [Lipid transport and metabolism]
Probab=94.33 E-value=0.059 Score=51.01 Aligned_cols=81 Identities=21% Similarity=0.419 Sum_probs=70.5
Q ss_pred CCCCCChhHHHHHHHHHHHhccCCcHHHHHHHHHhhhcccC-CcHHHHHHHHHHhHHHHHHHH--hcCCccccccc-cc-
Q 028613 51 RNENLCTLCEEFTAKAVDYFAENKTQTEIINLLHSSCSHLH-SFEEECISVVDYYVPLFFLEI--STIQPADFCQK-FN- 125 (206)
Q Consensus 51 ~~~~~C~~C~~vV~~v~~~l~~n~t~~~I~~~L~~~C~~lp-~~~~~C~~~V~~y~~~ii~~L--~~~~P~~IC~~-l~- 125 (206)
.....|..|+..++.++..++...++..|+..+..+|+... .-...|+.+++.|...+++.+ .-.+|..+|+. ++
T Consensus 21 ~~~~~c~~c~~~~~~~~~~~~~~~~~~~v~v~~~~~c~~~~~~~~~vc~~~~~~f~~~f~~v~~r~~~~~~~icg~~l~~ 100 (577)
T KOG3770|consen 21 VDKAQCTFCEKELSNAQKFPARISTNCTVIVFAVAVCELFVIEPTPVCTWIIDEFNDEFFDVFVRSANSPEEICGHFLPD 100 (577)
T ss_pred cccchhhhhhhhhhhHHhhhhcccccchhhhhHHHHhccccccCcchhhHHHHHHHHHHHHHHHHHhcCHHHHhhcccCC
Confidence 44459999999999999999999999999999999999888 688999999999999999986 44788999984 44
Q ss_pred ccCCCc
Q 028613 126 LCQRVA 131 (206)
Q Consensus 126 lC~~~~ 131 (206)
.|....
T Consensus 101 ~c~~~~ 106 (577)
T KOG3770|consen 101 TCGDIV 106 (577)
T ss_pred cccccc
Confidence 676443
No 9
>KOG4260 consensus Uncharacterized conserved protein [Function unknown]
Probab=87.74 E-value=3.4 Score=36.05 Aligned_cols=79 Identities=15% Similarity=0.361 Sum_probs=56.8
Q ss_pred CCCCChhHHHHHHHHHHHhcc----C-----------------CcHHHHHHHHHhhhcccC--CcHHHHHHHHHHhHHHH
Q 028613 52 NENLCTLCEEFTAKAVDYFAE----N-----------------KTQTEIINLLHSSCSHLH--SFEEECISVVDYYVPLF 108 (206)
Q Consensus 52 ~~~~C~~C~~vV~~v~~~l~~----n-----------------~t~~~I~~~L~~~C~~lp--~~~~~C~~~V~~y~~~i 108 (206)
....|-.|..+|+.+.+-|.. | .++.-+++.|+.+|+.-. ..-=+|+++.+..-..+
T Consensus 26 kp~pCrtC~~LVssFn~GlerT~r~hfaGGdTAWEEknL~kYk~SE~RLvEilEglCsks~~~n~DfeCh~lle~hEell 105 (350)
T KOG4260|consen 26 KPEPCRTCRGLVSSFNEGLERTARHHFAGGDTAWEEKNLSKYKTSETRLVEILEGLCSKSSLPNMDFECHTLLEKHEELL 105 (350)
T ss_pred CCCCchHHHHHHHHHHHHHHHHhhhccCCCchhhhhhhhhhccccchhHHHHHHHhhhccCCCCCChHHHHHHHHHHHHH
Confidence 566899999999988765542 2 334568899999998764 33349999999998888
Q ss_pred HHH-H--hcCCccc---ccc-cccccCCC
Q 028613 109 FLE-I--STIQPAD---FCQ-KFNLCQRV 130 (206)
Q Consensus 109 i~~-L--~~~~P~~---IC~-~l~lC~~~ 130 (206)
-++ + ++..|+. +|. .+++|=+.
T Consensus 106 E~w~~hkq~e~Pdl~~WlCvdqLkvCCp~ 134 (350)
T KOG4260|consen 106 EEWWYHKQHESPDLFNWLCVDQLKVCCPD 134 (350)
T ss_pred HHHHHHhhcCCchHHhHhhhhhheeccCC
Confidence 776 4 4466764 466 57776544
No 10
>KOG3782 consensus Predicted membrane protein, contains type II SA sequence [General function prediction only]
Probab=75.86 E-value=3.3 Score=33.42 Aligned_cols=22 Identities=18% Similarity=0.382 Sum_probs=17.4
Q ss_pred CCCCChhHHHHHHHHHHHhccC
Q 028613 52 NENLCTLCEEFTAKAVDYFAEN 73 (206)
Q Consensus 52 ~~~~C~~C~~vV~~v~~~l~~n 73 (206)
....|..|+.+|+.++-.+..-
T Consensus 23 ~~~~CgaC~alVtelE~~IA~v 44 (189)
T KOG3782|consen 23 REVKCGACKALVTELEEAIAKV 44 (189)
T ss_pred cccccchHHHHHHHHHHHHHhc
Confidence 4448999999999998777543
No 11
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=69.96 E-value=5.2 Score=29.21 Aligned_cols=24 Identities=29% Similarity=0.329 Sum_probs=12.9
Q ss_pred CchHHHHHHHH----HHHhccccchhhh
Q 028613 1 MERRVGLLFLF----LMGACCACDARQL 24 (206)
Q Consensus 1 ~~~~~~~~~l~----ll~~~~~~~a~~~ 24 (206)
|.-|.-|||.+ ||.++..-+||++
T Consensus 1 MaSK~~llL~l~LA~lLlisSevaa~~~ 28 (95)
T PF07172_consen 1 MASKAFLLLGLLLAALLLISSEVAAREL 28 (95)
T ss_pred CchhHHHHHHHHHHHHHHHHhhhhhHHh
Confidence 66665444332 4555556666665
No 12
>PF10208 Armet: Degradation arginine-rich protein for mis-folding; InterPro: IPR019345 This entry represents Armet proteins (aka mesencephalic astrocyte-derived neurotrophic factor or arginine-rich protein). Armet is a small protein of approximately 170 residues which contains four di-sulphide bridges that are highly conserved from nematodes to humans. Armet is a soluble protein resident in the endoplasmic reticulum and induced by ER stress. It appears to be involved with dealing with mis-folded proteins in the ER, thus in quality control of ER stress []. Armet from Rattus norvegicus (Rat) selectively promotes the survival of dopaminergic neurons of the ventral mid-brain. It modulates GABAergic transmission to the dopaminergic neurons of the substantia nigra, and enhances spontaneous, as well as evoked, GABAergic inhibitory postsynaptic currents in dopaminergic neurons [].; PDB: 2KVE_A 2KVD_A 2W51_A 2W50_B 2RQY_A.
Probab=60.62 E-value=3.6 Score=32.73 Aligned_cols=74 Identities=14% Similarity=0.324 Sum_probs=50.9
Q ss_pred CChhHHHHHHHHHHHhccCC---cHHHHHHHHHhhhcccC-CcHHHHHHHHHH------hHHHHHHHH-hcCCccccccc
Q 028613 55 LCTLCEEFTAKAVDYFAENK---TQTEIINLLHSSCSHLH-SFEEECISVVDY------YVPLFFLEI-STIQPADFCQK 123 (206)
Q Consensus 55 ~C~~C~~vV~~v~~~l~~n~---t~~~I~~~L~~~C~~lp-~~~~~C~~~V~~------y~~~ii~~L-~~~~P~~IC~~ 123 (206)
.|+.|..+++.+.+.+.+.. +.+.|++++.+.|...- .-...|..+-.. ....+..-+ -++.++.||..
T Consensus 1 ~CEVCv~~l~~f~~sl~~~~~~~~~~~ie~~l~~~C~~~k~kenr~CYyig~~~dsat~il~evs~Pls~~mP~~KICek 80 (154)
T PF10208_consen 1 ECEVCVKFLDRFYASLKDKDVKFDPDKIEKELRKFCKKAKGKENRFCYYIGATEDSATGILNEVSKPLSWHMPVEKICEK 80 (154)
T ss_dssp STHHHHCCHHHHHHHHHHTTS-SSCCHHHHHHHHHHCTS-CHHHHHHHHTT-STTTSHCCCHHHHHHHCTTSSCCCHHHH
T ss_pred CCcchHHHHHHHHHHhhcccccCCHHHHHHHHHHHHHhccCcccceEeeecccchHHHHHHHhhccccccCCCHHHHHHH
Confidence 59999999999998884332 55799999999998875 356677644221 011344456 56999999985
Q ss_pred c-----cccC
Q 028613 124 F-----NLCQ 128 (206)
Q Consensus 124 l-----~lC~ 128 (206)
+ .+|.
T Consensus 81 LkkkDsqICe 90 (154)
T PF10208_consen 81 LKKKDSQICE 90 (154)
T ss_dssp HHCT-CCCTT
T ss_pred Hhcccchhcc
Confidence 4 5665
No 13
>PF03058 Sar8_2: Sar8.2 family; InterPro: IPR004297 Members of this family are found in Solanaceae spp. plants, a taxonomic group (family) that includes pepper and tobacco plant species. Synthesis of these proteins is induced by Tobacco mosaic virus and salicylic acid []; indeed they are thought to be involved in the development of systemic acquired resistance (SAR) after an initial hypersensitive response to microbial infection [, ]. SAR is characterised by long-lasting resistance to infection by a wide range of pathogens, extending to plant tissues distant from the initial infection site [].
Probab=56.27 E-value=13 Score=26.93 Aligned_cols=19 Identities=26% Similarity=0.391 Sum_probs=14.6
Q ss_pred HHHHhccccchhhhcCchh
Q 028613 11 FLMGACCACDARQLGEPEL 29 (206)
Q Consensus 11 ~ll~~~~~~~a~~~~~~~~ 29 (206)
+|+.++..-||||+..+..
T Consensus 16 lLmIISSqv~AREms~A~a 34 (93)
T PF03058_consen 16 LLMIISSQVDAREMSKASA 34 (93)
T ss_pred HHHHHhhHHHHHHHhcccc
Confidence 5677788899999966554
No 14
>PHA03158 hypothetical protein; Provisional
Probab=55.41 E-value=36 Score=28.34 Aligned_cols=81 Identities=15% Similarity=0.274 Sum_probs=53.0
Q ss_pred hHHHHHHHHHHHhccccchhhhcCchhHHHHhh--h-----hhhccccCCcccc--CCCCCCChhHHHHHHHHHHHhccC
Q 028613 3 RRVGLLFLFLMGACCACDARQLGEPELSVLQVS--K-----HEQEKESQPVENF--GRNENLCTLCEEFTAKAVDYFAEN 73 (206)
Q Consensus 3 ~~~~~~~l~ll~~~~~~~a~~~~~~~~~~~~~~--~-----~e~~~~~~~~~~~--~~~~~~C~~C~~vV~~v~~~l~~n 73 (206)
.++|++++|.|-++...|+..+-+++-+..-+- . |--++.+--.+.| ...+..|.-|..+.+.+=+-+.++
T Consensus 25 ~~~~iii~i~lc~~~~t~s~~i~t~~~~~~nitq~~s~nithtleatifsts~pn~~e~se~~~ncst~ldl~wq~lg~~ 104 (273)
T PHA03158 25 FKFGIIILIMLCLALLTDSEPIPTPAAPILNITQPPSLNITHTLEATIFSTSRPNILEPSENCKNCSTFLDLFWQQLGEG 104 (273)
T ss_pred ehhhHHHHHHHHHhhccCCCcCCCCccccccccCCCccceeeeeeeeeeccCCCcccCcCccccchhHHHHHHHHHhcCC
Confidence 478999999999998889888766644322111 0 0000111112333 356678999999999999999999
Q ss_pred CcHHHHHHHH
Q 028613 74 KTQTEIINLL 83 (206)
Q Consensus 74 ~t~~~I~~~L 83 (206)
.+-.+++-.|
T Consensus 105 ~sik~lml~l 114 (273)
T PHA03158 105 ASIKDLMLNL 114 (273)
T ss_pred ccHHHHHHHH
Confidence 8777665544
No 15
>KOG4154 consensus Arginine-rich protein [General function prediction only]
Probab=49.37 E-value=59 Score=25.53 Aligned_cols=73 Identities=19% Similarity=0.326 Sum_probs=49.9
Q ss_pred CCCCChhHHHHHHHHHHHhccCCc---HHHHHHHHHhhhcccC-CcHHHHHHHH--HHhHHHHHHHH-----hcCCcccc
Q 028613 52 NENLCTLCEEFTAKAVDYFAENKT---QTEIINLLHSSCSHLH-SFEEECISVV--DYYVPLFFLEI-----STIQPADF 120 (206)
Q Consensus 52 ~~~~C~~C~~vV~~v~~~l~~n~t---~~~I~~~L~~~C~~lp-~~~~~C~~~V--~~y~~~ii~~L-----~~~~P~~I 120 (206)
....|+.|...++.+-+-|.+..| -.+|+.++.++|.... .-...|..+- +.-...|+..+ -++..+.|
T Consensus 28 k~~dcevci~~l~rf~~~l~d~d~~~~~~~ie~~~~kfck~~k~ke~r~cyyig~~ddaat~iinelskpla~~ip~eki 107 (178)
T KOG4154|consen 28 KEEDCEVCIKTLGRFADDLDDRDTKFDPAQIENAFIKFCKAAKGKEHRFCYYIGALDDAATGIINELSKPLAHHIPAEKI 107 (178)
T ss_pred CcccchHHHHHHHHHHHhhccccccCCHHHHHHHHHHHHHHhcCCcceeeeeeccchHHHHHHHHHhcchhhccCcHHHH
Confidence 445899999999999888877633 4799999999997665 4455665432 33334455433 24777888
Q ss_pred cccc
Q 028613 121 CQKF 124 (206)
Q Consensus 121 C~~l 124 (206)
|..+
T Consensus 108 cekl 111 (178)
T KOG4154|consen 108 CEKL 111 (178)
T ss_pred HHHH
Confidence 8754
No 16
>PF15183 MRAP: Melanocortin-2 receptor accessory protein family
Probab=48.99 E-value=13 Score=26.55 Aligned_cols=19 Identities=26% Similarity=0.308 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHhccccchh
Q 028613 4 RVGLLFLFLMGACCACDAR 22 (206)
Q Consensus 4 ~~~~~~l~ll~~~~~~~a~ 22 (206)
=++++||||+..+|+.+.+
T Consensus 49 FV~~lF~iL~~ms~sgspq 67 (90)
T PF15183_consen 49 FVVFLFLILLYMSWSGSPQ 67 (90)
T ss_pred HHHHHHHHHHHHhccCCCC
Confidence 3678999999999987663
No 17
>PF13798 PCYCGC: Protein of unknown function with PCYCGC motif
Probab=47.38 E-value=39 Score=27.05 Aligned_cols=38 Identities=21% Similarity=0.476 Sum_probs=34.0
Q ss_pred CCCCCChhHHHHHHHHHHHhccCCcHHHHHHHHHhhhc
Q 028613 51 RNENLCTLCEEFTAKAVDYFAENKTQTEIINLLHSSCS 88 (206)
Q Consensus 51 ~~~~~C~~C~~vV~~v~~~l~~n~t~~~I~~~L~~~C~ 88 (206)
.-+..|..|..+......+.++.++-.+|++.+++-..
T Consensus 109 ~Hg~~C~vCl~ia~~a~~~~~~Gks~~eIR~~ID~kYk 146 (158)
T PF13798_consen 109 DHGTRCGVCLDIAVQAVQMYQEGKSPKEIRQYIDEKYK 146 (158)
T ss_pred ccccccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 45578999999999999999999999999999988665
No 18
>COG3088 CcmH Uncharacterized protein involved in biosynthesis of c-type cytochromes [Posttranslational modification, protein turnover, chaperones]
Probab=45.02 E-value=42 Score=26.66 Aligned_cols=31 Identities=13% Similarity=0.373 Sum_probs=22.8
Q ss_pred HHHHHHHHHHhccCCcHHHHHHHHHhhhccc
Q 028613 60 EEFTAKAVDYFAENKTQTEIINLLHSSCSHL 90 (206)
Q Consensus 60 ~~vV~~v~~~l~~n~t~~~I~~~L~~~C~~l 90 (206)
..+-..+.+++.+.+++.+|++.+-.-.+.+
T Consensus 64 ~DlR~~V~e~l~eGkS~~qIid~mVaRYG~F 94 (153)
T COG3088 64 RDLRHQVYELLQEGKSDQQIIDYMVARYGEF 94 (153)
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHhhcce
Confidence 3456677888888888888888886655443
No 19
>KOG4052 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.20 E-value=39 Score=27.35 Aligned_cols=21 Identities=29% Similarity=0.313 Sum_probs=17.9
Q ss_pred HHHHHHHhHHHHHHHHHhhCC
Q 028613 152 CKKLVFEYGPLILANTEQFLE 172 (206)
Q Consensus 152 C~~~V~~Y~p~ii~~l~~~~~ 172 (206)
|.++.++|-+.|=++..++-+
T Consensus 154 ce~lleeyed~i~ewyf~hq~ 174 (190)
T KOG4052|consen 154 CESLLEEYEDLIEEWYFNHQS 174 (190)
T ss_pred HHHHHHHHHHHHHHHHhcccc
Confidence 999999999988888777664
No 20
>PRK10144 formate-dependent nitrite reductase complex subunit NrfF; Provisional
Probab=42.63 E-value=58 Score=25.08 Aligned_cols=34 Identities=18% Similarity=0.306 Sum_probs=26.6
Q ss_pred hhHHHHHHHHHHHhccCCcHHHHHHHHHhhhccc
Q 028613 57 TLCEEFTAKAVDYFAENKTQTEIINLLHSSCSHL 90 (206)
Q Consensus 57 ~~C~~vV~~v~~~l~~n~t~~~I~~~L~~~C~~l 90 (206)
++=+.+-..+.+++.+..|++||++.+..-.+..
T Consensus 57 ~iA~dmR~~Vr~~i~~G~sd~eI~~~~v~RYG~~ 90 (126)
T PRK10144 57 PVAVSMRHQVYSMVAEGKSEVEIIGWMTERYGDF 90 (126)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHhcCCe
Confidence 4445677788899999999999999987766543
No 21
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=42.21 E-value=18 Score=26.41 Aligned_cols=23 Identities=26% Similarity=0.323 Sum_probs=12.2
Q ss_pred HHHHHhccccchhhhcCchhHHHHh
Q 028613 10 LFLMGACCACDARQLGEPELSVLQV 34 (206)
Q Consensus 10 l~ll~~~~~~~a~~~~~~~~~~~~~ 34 (206)
+|||++.++ +.-|+.|++++-..
T Consensus 6 ~llL~l~LA--~lLlisSevaa~~~ 28 (95)
T PF07172_consen 6 FLLLGLLLA--ALLLISSEVAAREL 28 (95)
T ss_pred HHHHHHHHH--HHHHHHhhhhhHHh
Confidence 455555543 33345566665444
No 22
>PF05624 LSR: Lipolysis stimulated receptor (LSR); InterPro: IPR008664 This domain consists of mammalian LISCH7 protein homologues. LISCH7 is a liver-specific BHLH-ZIP transcription factor.
Probab=40.68 E-value=20 Score=22.77 Aligned_cols=11 Identities=55% Similarity=1.174 Sum_probs=8.1
Q ss_pred HHHHHHHHhcc
Q 028613 7 LLFLFLMGACC 17 (206)
Q Consensus 7 ~~~l~ll~~~~ 17 (206)
++||+|+|.+|
T Consensus 13 ~ll~~LigiCw 23 (49)
T PF05624_consen 13 LLLLLLIGICW 23 (49)
T ss_pred HHHHHHHHHHH
Confidence 45666888888
No 23
>PF11770 GAPT: GRB2-binding adapter (GAPT); InterPro: IPR021082 This entry represents a family of transmembrane proteins which bind the growth factor receptor-bound protein 2 (GRB2) in B cells []. In contrast to other transmembrane adaptor proteins, GAPT, which this entry represents, is not phosphorylated upon BCR ligation. It associates with GRB2 constitutively through its proline-rich region [].
Probab=39.50 E-value=20 Score=28.53 Aligned_cols=18 Identities=22% Similarity=0.440 Sum_probs=12.4
Q ss_pred chHHHHHHHHHHHhcccc
Q 028613 2 ERRVGLLFLFLMGACCAC 19 (206)
Q Consensus 2 ~~~~~~~~l~ll~~~~~~ 19 (206)
++.||+.||+||.+|+.+
T Consensus 11 ~i~igi~Ll~lLl~cgiG 28 (158)
T PF11770_consen 11 AISIGISLLLLLLLCGIG 28 (158)
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 466888877777766543
No 24
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=38.83 E-value=13 Score=29.37 Aligned_cols=22 Identities=9% Similarity=0.081 Sum_probs=17.0
Q ss_pred CCCCCChhHHHHHHHHHHHhcc
Q 028613 51 RNENLCTLCEEFTAKAVDYFAE 72 (206)
Q Consensus 51 ~~~~~C~~C~~vV~~v~~~l~~ 72 (206)
-...-|..|+.+...++++.++
T Consensus 54 Fya~wC~~Ck~l~p~l~~la~~ 75 (152)
T cd02962 54 FFTTWSPECVNFAPVFAELSLK 75 (152)
T ss_pred EECCCCHHHHHHHHHHHHHHHH
Confidence 3456799999999888877654
No 25
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=35.45 E-value=68 Score=25.57 Aligned_cols=49 Identities=20% Similarity=0.268 Sum_probs=30.9
Q ss_pred cHHHHHHHHHhhhcccCCcHHHHHHHHHHhHHHHHHHH-hcCCccccccccc
Q 028613 75 TQTEIINLLHSSCSHLHSFEEECISVVDYYVPLFFLEI-STIQPADFCQKFN 125 (206)
Q Consensus 75 t~~~I~~~L~~~C~~lp~~~~~C~~~V~~y~~~ii~~L-~~~~P~~IC~~l~ 125 (206)
|++|..+.|++.=+.+| .++-++.++.|...+-+.. ++.+-++++..+|
T Consensus 2 ~k~efL~~L~~~L~~lp--~~e~~e~l~~Y~e~f~d~~~~G~sEeeii~~LG 51 (181)
T PF08006_consen 2 NKNEFLNELEKYLKKLP--EEEREEILEYYEEYFDDAGEEGKSEEEIIAELG 51 (181)
T ss_pred CHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHcC
Confidence 45555555555444565 4566677777777776665 5567777777665
No 26
>TIGR03147 cyt_nit_nrfF cytochrome c nitrite reductase, accessory protein NrfF.
Probab=32.48 E-value=88 Score=24.07 Aligned_cols=33 Identities=12% Similarity=0.319 Sum_probs=26.3
Q ss_pred hhHHHHHHHHHHHhccCCcHHHHHHHHHhhhcc
Q 028613 57 TLCEEFTAKAVDYFAENKTQTEIINLLHSSCSH 89 (206)
Q Consensus 57 ~~C~~vV~~v~~~l~~n~t~~~I~~~L~~~C~~ 89 (206)
++=..+-..+.+++.+..|++||++++..-.+.
T Consensus 57 ~iA~dmR~~Vr~~i~~G~Sd~eI~~~~v~RYG~ 89 (126)
T TIGR03147 57 PIAYDLRHEVYSMVNEGKSNQQIIDFMTARFGD 89 (126)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHhcCC
Confidence 444567778889999999999999998776654
No 27
>PF06298 PsbY: Photosystem II protein Y (PsbY); InterPro: IPR009388 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbY found in PSII. In higher plants, two related PsbY proteins exist, PsbY-1 and PsbY-2, which appear to function as a heterodimer. In spinach and Arabidopsis, these two proteins arise from a single-copy nuclear gene that is processed in the chloroplast. By contrast, prokaryotic and organellar chromosomes encode a single PsbY protein, as found in cyanobacteria and red algae, indicating a duplication event in the evolution of higher plants []. PsbY has two low manganese-dependent activities: a catalase-like activity and an L-arginine metabolising activity that converts L-arginine into ornithine and urea []. In addition, a redox-active group is thought to be present in the protein. In cyanobacteria, PsbY deletion mutants have a slightly impaired PSII that is less capable of coping with low levels of calcium ions than the wild-type.; GO: 0030145 manganese ion binding, 0015979 photosynthesis, 0009523 photosystem II, 0016021 integral to membrane
Probab=31.30 E-value=38 Score=20.31 Aligned_cols=19 Identities=32% Similarity=0.294 Sum_probs=13.8
Q ss_pred CchHHHHHHHH-HHHhcccc
Q 028613 1 MERRVGLLFLF-LMGACCAC 19 (206)
Q Consensus 1 ~~~~~~~~~l~-ll~~~~~~ 19 (206)
|+.|.-++++- ++++.|+-
T Consensus 1 mD~R~liVl~Pil~A~gWa~ 20 (36)
T PF06298_consen 1 MDWRLLIVLLPILPAAGWAL 20 (36)
T ss_pred CCchhHHHHHHHHHHHHHHH
Confidence 88998877554 66778863
No 28
>KOG4063 consensus Major epididymal secretory protein HE1 [Function unknown]
Probab=29.87 E-value=39 Score=26.90 Aligned_cols=18 Identities=22% Similarity=0.110 Sum_probs=12.5
Q ss_pred CchHHHHH--HHHHHHhccc
Q 028613 1 MERRVGLL--FLFLMGACCA 18 (206)
Q Consensus 1 ~~~~~~~~--~l~ll~~~~~ 18 (206)
|++|++.. |++||+++|+
T Consensus 1 m~ms~~~~v~l~alls~a~a 20 (158)
T KOG4063|consen 1 MMMSFLKTVILLALLSLAAA 20 (158)
T ss_pred CchHHHHHHHHHHHHHHhhh
Confidence 67777655 6668888873
No 29
>CHL00196 psbY photosystem II protein Y; Provisional
Probab=25.45 E-value=57 Score=19.56 Aligned_cols=19 Identities=26% Similarity=0.287 Sum_probs=13.7
Q ss_pred CchHHHHHHH-HHHHhcccc
Q 028613 1 MERRVGLLFL-FLMGACCAC 19 (206)
Q Consensus 1 ~~~~~~~~~l-~ll~~~~~~ 19 (206)
|+.|.-++|+ +++.++|+-
T Consensus 1 mD~RlliVl~Pil~A~~Wa~ 20 (36)
T CHL00196 1 MDTRLLVIAAPVLAAASWAL 20 (36)
T ss_pred CChhHHHHHHHHHHHHHHHH
Confidence 8889877755 477777863
No 30
>PRK13240 pbsY photosystem II protein Y; Reviewed
Probab=25.36 E-value=59 Score=19.96 Aligned_cols=18 Identities=22% Similarity=0.318 Sum_probs=13.6
Q ss_pred CchHHHHHHH-HHHHhccc
Q 028613 1 MERRVGLLFL-FLMGACCA 18 (206)
Q Consensus 1 ~~~~~~~~~l-~ll~~~~~ 18 (206)
|+.|..++|+ +++++.|+
T Consensus 1 mD~RlliVl~Pil~A~~Wa 19 (40)
T PRK13240 1 IDLRLLIVLAPILAAAGWA 19 (40)
T ss_pred CchhHHHHHHHHHHHHHHH
Confidence 8889887755 47777786
No 31
>PF11052 Tr-sialidase_C: Trans-sialidase of Trypanosoma hydrophobic C-terminal; InterPro: IPR021287 This is a highly conserved region, of about 50aa, that is the very C terminus of a number of more diverse proteins from Trypanosoma cruzi. All members of the family are annotated putatively as being trans-sialidase but this appears to be a diverse group.
Probab=24.77 E-value=53 Score=18.09 Aligned_cols=11 Identities=36% Similarity=0.573 Sum_probs=7.4
Q ss_pred HHHHHHHhccc
Q 028613 8 LFLFLMGACCA 18 (206)
Q Consensus 8 ~~l~ll~~~~~ 18 (206)
++|++||+++.
T Consensus 12 lLLlLLGLwGf 22 (25)
T PF11052_consen 12 LLLLLLGLWGF 22 (25)
T ss_pred HHHHHHHHHHH
Confidence 45558888864
No 32
>TIGR03501 gamma_C_targ gammaproteobacterial enzyme C-terminal transmembrane domain. This homology domain, largely restricted to a subset of the gamma proteobacteria that excludes the enterobacteria, is found at the extreme carboxyl-terminus of a diverse set of proteins, most of which are enzymes with conventional signal sequences and with hydrolytic activities: nucleases, proteases, agarases, etc. Species that have this domain at all typically have from two to fifteen proteins tagged with this domain at the C-terminus. The agarase AgaA from Vibro sp. strain JT0107 is secreted into the medium, while the same protein heterologously expressed in E. coli is retained in the cell fraction. This suggests cleavage and release in species with this domain. Both this suggestion, and the chemical structure of the domain (motif, hydrophobic predicted transmembrane helix, cluster of basic residues) closely parallels that of the LPXTG/sortase system and the PEP-CTERM/exosortase(EpsH) system.
Probab=22.53 E-value=75 Score=17.58 Aligned_cols=16 Identities=25% Similarity=0.223 Sum_probs=10.3
Q ss_pred chHHHHHHHHHHHhcc
Q 028613 2 ERRVGLLFLFLMGACC 17 (206)
Q Consensus 2 ~~~~~~~~l~ll~~~~ 17 (206)
++.+|.+.|++|++.+
T Consensus 2 GGSlGwl~LllL~~~~ 17 (26)
T TIGR03501 2 GGSLGWLSLLLLLLLG 17 (26)
T ss_pred cchHHHHHHHHHHHHH
Confidence 4677877666665544
No 33
>PF03918 CcmH: Cytochrome C biogenesis protein; InterPro: IPR005616 Members of this family include NrfF, CcmH, CycL, Ccl2.; PDB: 2KW0_A 2HL7_A.
Probab=21.25 E-value=1.6e+02 Score=23.17 Aligned_cols=39 Identities=15% Similarity=0.335 Sum_probs=30.2
Q ss_pred CCCCChhHHHHHHHHHHHhccCCcHHHHHHHHHhhhccc
Q 028613 52 NENLCTLCEEFTAKAVDYFAENKTQTEIINLLHSSCSHL 90 (206)
Q Consensus 52 ~~~~C~~C~~vV~~v~~~l~~n~t~~~I~~~L~~~C~~l 90 (206)
.+..|+....+=..+.+++.+..|+++|++.+..-.+..
T Consensus 52 ~~s~a~~A~dmR~~I~~~l~~G~s~~eI~~~~v~rYG~~ 90 (148)
T PF03918_consen 52 ADSNAPIARDMRREIREMLAEGKSDEEIIDYFVERYGEF 90 (148)
T ss_dssp TT--SHHHHHHHHHHHHHHHHT--HHHHHHHHHHHHTTT
T ss_pred hhcCcHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhcCcc
Confidence 444799999999999999999999999999997766543
Done!