BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028614
(206 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6BN19|AIM18_DEBHA Altered inheritance of mitochondria protein 18, mitochondrial
OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 /
JCM 1990 / NBRC 0083 / IGC 2968) GN=AIM18 PE=3 SV=1
Length = 297
Score = 37.4 bits (85), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 80/186 (43%), Gaps = 30/186 (16%)
Query: 5 RFPFSFSQPSNLPHTATR---SFSVAVTAAAAAATASVAGIAVYHNQKHPLVQNALNCLF 61
RF FS L ++ R S + +++ G+A+Y+ H L++
Sbjct: 11 RFNFSKVTTKRLFSSSARPIHSLRIKSLTLGVCGFSAITGLALYN---HRLIE------- 60
Query: 62 SNQSSSHFWASLSFADNSSATVVESKTGTSFPSVLGGSRKLLGIGLRKKSVLGLKNIDVY 121
+ ++S A +SS + + ++ + L +LLG G+R + + N VY
Sbjct: 61 LDNKKQDISPNISIAVDSSISPFPTALISANQTNLNTDFQLLGYGVRSVTFV---NFKVY 117
Query: 122 AFGVYADHDDV---KKILSEKY------GNMSVAELKEN-----KLNEDLMEADVCMTVR 167
G+Y +DDV KKILS Y N S+ EL + +L L+E +V VR
Sbjct: 118 GIGLYIANDDVNKTKKILSPNYLSTFGTENHSLRELLSDPEFSAQLISKLLEENVRFAVR 177
Query: 168 LQIIYN 173
+ + N
Sbjct: 178 ISPVRN 183
>sp|Q75DU9|AIM18_ASHGO Altered inheritance of mitochondria protein 18, mitochondrial
OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 /
FGSC 9923 / NRRL Y-1056) GN=AIM18 PE=3 SV=1
Length = 304
Score = 37.0 bits (84), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 38/76 (50%), Gaps = 14/76 (18%)
Query: 76 ADNSSATVVESKTGT-SFPSVLGGSR-------KLLGIGLRKKSVLGLKNIDVYAFGVYA 127
A++ +VE G FP+VLG KLLG G+R + L K VYA G+YA
Sbjct: 68 AESDFPELVEVYPGVRPFPAVLGPPELPLQTNYKLLGHGVRAVTFLSFK---VYALGIYA 124
Query: 128 DHDD---VKKILSEKY 140
DD + + LS +Y
Sbjct: 125 AVDDLPLIPRTLSAEY 140
>sp|Q4WSI0|STU1_ASPFU Protein stu1 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 /
CBS 101355 / FGSC A1100) GN=stu1 PE=3 SV=2
Length = 1344
Score = 35.4 bits (80), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 57/127 (44%), Gaps = 25/127 (19%)
Query: 63 NQSSSHFWASLSFADNSSATVVESKTGTSFPSVLGGSRKLLGIGLRKKSVLGLKNIDVYA 122
+ S H W + AD ++ SK T ++++L G+++ + K +D+
Sbjct: 1075 DDHSRHRWKKVEIADRRTSISPRSKDPTK-------AQQMLDKGIQR---IRTKTMDILG 1124
Query: 123 F----GVYADHDDVKKILSEKYGNMSVAELKENKLNEDL----------MEADVCMTVRL 168
+ G+ HD + EKY M +A L E + + D ++ V +T+RL
Sbjct: 1125 YRKLQGIIKYHDSIF-TNEEKYDEMLLALLDELESSPDDKRQPLGRPLDLKTQVLLTIRL 1183
Query: 169 QIIYNKL 175
+I+NK+
Sbjct: 1184 MLIHNKI 1190
>sp|Q83470|P2A_SCPMV Polyprotein P2A OS=Southern cowpea mosaic virus GN=ORF2A PE=4 SV=2
Length = 572
Score = 34.3 bits (77), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 57/126 (45%), Gaps = 16/126 (12%)
Query: 94 SVLGGSRKLLGIGLRKKSVLGLKNID-VYAFGVYADHDDVKKILSEK---YGNMSVAELK 149
++LG + ++ G KS++ +K+ D FG H+ + ++ Y + L
Sbjct: 134 AILGSTYSVVETGGEPKSLVAVKSGDSTLGFGARVYHEGMDVLMVPHHVWYNDKPHTALA 193
Query: 150 ENKLNEDLMEADV---CMTVRLQII--------YNKLSIRSVRSAFEESVGSRLQKFGGS 198
+N + D + +V C R+ + + KL++RS + G+ +Q FGG
Sbjct: 194 KNGRSVDTEDWEVEAACADPRIDFVLVKVPTAVWAKLAVRSTK-VLAPVHGTAVQTFGGQ 252
Query: 199 DNKELL 204
D+K+L
Sbjct: 253 DSKQLF 258
>sp|P21405|RDRP_SCPMV Replicase polyprotein P2AB OS=Southern cowpea mosaic virus
GN=ORF2A-2B PE=4 SV=2
Length = 956
Score = 34.3 bits (77), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 57/126 (45%), Gaps = 16/126 (12%)
Query: 94 SVLGGSRKLLGIGLRKKSVLGLKNID-VYAFGVYADHDDVKKILSEK---YGNMSVAELK 149
++LG + ++ G KS++ +K+ D FG H+ + ++ Y + L
Sbjct: 134 AILGSTYSVVETGGEPKSLVAVKSGDSTLGFGARVYHEGMDVLMVPHHVWYNDKPHTALA 193
Query: 150 ENKLNEDLMEADV---CMTVRLQII--------YNKLSIRSVRSAFEESVGSRLQKFGGS 198
+N + D + +V C R+ + + KL++RS + G+ +Q FGG
Sbjct: 194 KNGRSVDTEDWEVEAACADPRIDFVLVKVPTAVWAKLAVRSTK-VLAPVHGTAVQTFGGQ 252
Query: 199 DNKELL 204
D+K+L
Sbjct: 253 DSKQLF 258
>sp|C5DRI2|AIM18_ZYGRC Altered inheritance of mitochondria protein 18, mitochondrial
OS=Zygosaccharomyces rouxii (strain ATCC 2623 / CBS 732
/ NBRC 1130 / NCYC 568 / NRRL Y-229) GN=AIM18 PE=3 SV=1
Length = 312
Score = 30.8 bits (68), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 13/74 (17%)
Query: 77 DNSSATVVESKTGTSFPSVLGGSR-------KLLGIGLRKKSVLGLKNIDVYAFGVY-AD 128
D++ TV+ K + FP +G + LLG G R + + K VY G+Y AD
Sbjct: 77 DDAENTVMVDKNISPFPVHIGPPKYPFSTDYSLLGYGYRYVTFISFK---VYDLGIYIAD 133
Query: 129 HDD--VKKILSEKY 140
D V ++LS K+
Sbjct: 134 QDKHLVPEVLSSKF 147
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.128 0.353
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,674,307
Number of Sequences: 539616
Number of extensions: 2420888
Number of successful extensions: 9530
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 28
Number of HSP's that attempted gapping in prelim test: 9519
Number of HSP's gapped (non-prelim): 35
length of query: 206
length of database: 191,569,459
effective HSP length: 112
effective length of query: 94
effective length of database: 131,132,467
effective search space: 12326451898
effective search space used: 12326451898
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.9 bits)