Query 028614
Match_columns 206
No_of_seqs 87 out of 89
Neff 3.9
Searched_HMMs 46136
Date Fri Mar 29 14:15:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028614.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028614hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03174 Chalcone-flavanone is 100.0 1.3E-64 2.8E-69 449.4 18.6 200 1-205 1-201 (278)
2 PLN03175 hypothetical protein; 100.0 2.4E-35 5.2E-40 273.3 12.7 134 72-205 196-337 (415)
3 PLN02804 chalcone isomerase 100.0 1.1E-29 2.4E-34 218.2 12.2 114 88-205 7-126 (206)
4 PLN02311 chalcone isomerase 100.0 2E-29 4.3E-34 223.9 13.9 119 78-200 63-187 (271)
5 PLN02559 chalcone--flavonone i 99.9 7E-25 1.5E-29 191.2 11.1 108 88-198 10-123 (230)
6 PF02431 Chalcone: Chalcone-fl 99.9 4.5E-25 9.7E-30 184.2 9.3 101 92-197 1-108 (199)
7 PLN03174 Chalcone-flavanone is 75.5 2.7 5.8E-05 38.4 3.0 31 5-37 9-39 (278)
8 PF10126 Nit_Regul_Hom: Unchar 53.7 12 0.00025 30.4 2.4 49 139-193 35-91 (110)
9 PF04282 DUF438: Family of unk 49.1 25 0.00054 26.2 3.4 33 128-162 14-46 (71)
10 PF00952 Bunya_nucleocap: Buny 35.4 23 0.00051 31.8 1.7 72 114-196 146-225 (228)
11 PF03780 Asp23: Asp23 family; 33.3 82 0.0018 23.3 4.2 42 159-201 57-98 (108)
12 cd07914 IGPD Imidazoleglycerol 33.0 1.5E+02 0.0033 25.9 6.3 58 138-199 121-178 (190)
13 PLN02800 imidazoleglycerol-pho 29.9 1.5E+02 0.0033 27.2 6.0 58 138-199 187-245 (261)
14 PRK13598 hisB imidazoleglycero 24.8 2.2E+02 0.0049 25.0 5.9 58 138-199 125-182 (193)
15 PRK00951 hisB imidazoleglycero 24.2 2.4E+02 0.0053 24.8 6.0 56 138-197 125-180 (195)
16 cd01470 vWA_complement_factors 22.8 65 0.0014 26.2 2.1 18 117-134 154-173 (198)
17 PF05402 PqqD: Coenzyme PQQ sy 21.6 1.2E+02 0.0027 20.5 3.1 31 130-161 33-65 (68)
18 PF00475 IGPD: Imidazoleglycer 20.0 2.1E+02 0.0046 24.0 4.7 52 138-193 94-145 (145)
No 1
>PLN03174 Chalcone-flavanone isomerase-related; Provisional
Probab=100.00 E-value=1.3e-64 Score=449.38 Aligned_cols=200 Identities=72% Similarity=1.021 Sum_probs=189.0
Q ss_pred CccccccccCCCCCCCCCCCCchhHHHHHHHHHHhhhhhhhhhhhccCCChhhHhhhhhccCCCCCccccceeeeccCCC
Q 028614 1 MVSLRFPFSFSQPSNLPHTATRSFSVAVTAAAAAATASVAGIAVYHNQKHPLVQNALNCLFSNQSSSHFWASLSFADNSS 80 (206)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lsla~~~~ 80 (206)
||||||||+|+||+ |+++...+++++++++++++|+.|+|++++++.||++||||| |+||++| +||+|||||+++
T Consensus 1 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~a~~~~ 75 (278)
T PLN03174 1 MVSLRFPFSFSQPP--RAPSFFAAAAAVAAAAAAAAAAAAAIAASRNPPHPFLQNALN--FHNSSSP-PWASISLADPSP 75 (278)
T ss_pred CcceecccccCCCC--CCCCcchHHHHHHHHHHHHHHHHHHHHhhcCCCCchhhhhcc--cCCCCCc-ccccceeccCCC
Confidence 99999999999999 888776666666666666666779999999999999999999 9999999 999999999999
Q ss_pred CceeecCCCcccCccccCCceeEeeeeeeeEEeeeeeeeEEEEEEEechHHHHHHhhhhcCCCChhhhhhch-HHHHHhh
Q 028614 81 ATVVESKTGTSFPSVLGGSRKLLGIGLRKKSVLGLKNIDVYAFGVYADHDDVKKILSEKYGNMSVAELKENK-LNEDLME 159 (206)
Q Consensus 81 ~~vvEPkTGIsFP~~L~~~~~LvG~GvR~ksIlglK~IKVYA~G~YvD~~~lk~~L~~k~~g~p~~EL~~~~-f~edLl~ 159 (206)
+++|||+|||+||.+++.+.+|+|+|+|+|+|+|+|+|||||+|+|+|+++++++|++||+|++.+||++++ ||++|++
T Consensus 76 ~~~vEp~tGv~FP~~l~~~~~LLGaGvR~k~i~glk~IKvYAiGlYl~~~~v~~~L~~k~kgks~~El~~s~~f~~dil~ 155 (278)
T PLN03174 76 PSVVESKTGVSFPAEIGDSRRLLGVGLRKKSILGLKNIDVYAFGVYADDDDLKKLLGEKYGKLSASELKGNKEFIDDLME 155 (278)
T ss_pred CceeccCCCCcCCCcccCCCcceeeeeeeEEEeccceEEEEEEEEEechhHhHHHhhhhhcCCChhhhhcCHHHHHHHHc
Confidence 999999999999999998888999999999999999999999999999999999999999999999999999 9999999
Q ss_pred cCcceEEEEEEeecccchhhHHHHHHHHHHHHhhhcCCCCchhhhc
Q 028614 160 ADVCMTVRLQIIYNKLSIRSVRSAFEESVGSRLQKFGGSDNKELLQ 205 (206)
Q Consensus 160 ~dv~~tVRLViv~~~l~~~~vrdAFeeSL~~RLkk~gg~~~~el~q 205 (206)
+|++|++||+|+|++++++++|+||+|++++||+++++.+++|+++
T Consensus 156 ~~~ek~iRL~iiy~~v~~~~v~~A~~esv~~rl~~~~~~e~~e~Ie 201 (278)
T PLN03174 156 ADIKMTVRLQIVYGKLSIRSVRSAFEESVGSRLQKFGGSDNKELLQ 201 (278)
T ss_pred CCCceEEEEEEEeccccHHHHHHHHHHHHHHhhhccCCcchHHHHH
Confidence 9999999999999999999999999999999999999999998875
No 2
>PLN03175 hypothetical protein; Provisional
Probab=100.00 E-value=2.4e-35 Score=273.26 Aligned_cols=134 Identities=41% Similarity=0.668 Sum_probs=122.3
Q ss_pred eeeecc-CCCCceeecCCCcccCcccc------CCceeEeeeeeeeEEeeeeeeeEEEEEEEechHHHHHHhhhhcCCCC
Q 028614 72 SLSFAD-NSSATVVESKTGTSFPSVLG------GSRKLLGIGLRKKSVLGLKNIDVYAFGVYADHDDVKKILSEKYGNMS 144 (206)
Q Consensus 72 ~lsla~-~~~~~vvEPkTGIsFP~~L~------~~~~LvG~GvR~ksIlglK~IKVYA~G~YvD~~~lk~~L~~k~~g~p 144 (206)
++|+.+ +-..++|||+|||+||.+++ .+..|+|+|+|+|+|+++|+|||||||+|+|+++++.+|++||+|++
T Consensus 196 ~~~~~~~~~~~~~vEPkTgv~FP~~l~~~p~s~~sl~L~G~GvR~~eI~~~k~IKfyAiGVYle~~~v~~~L~~KwkGKs 275 (415)
T PLN03175 196 GLSFPDLNWTRDAVEPRTGIEFPMLLDENNSSLTSEVLVGTGSRTMKIIRIKSLKVYAFGFYVHPNSVCEKLGPKYASVP 275 (415)
T ss_pred ccCcCcccccccccccCCCCcCCccccCCCCCCCceeeeecccceeEEEeeceeEEEEEEEEeccchHHHHHhhhhCCCc
Confidence 556655 55778999999999999996 23569999999999999999999999999999988999999999999
Q ss_pred hhhhhhch-HHHHHhhcCcceEEEEEEeecccchhhHHHHHHHHHHHHhhhcCCCCchhhhc
Q 028614 145 VAELKENK-LNEDLMEADVCMTVRLQIIYNKLSIRSVRSAFEESVGSRLQKFGGSDNKELLQ 205 (206)
Q Consensus 145 ~~EL~~~~-f~edLl~~dv~~tVRLViv~~~l~~~~vrdAFeeSL~~RLkk~gg~~~~el~q 205 (206)
++||.+++ ||+|++++|++|+||||+++++++++++++||+|++++||+++++.++.|.++
T Consensus 276 a~EL~~s~eFf~DIItap~~m~IRLVii~~gI~~sk~~~Afees~g~RLkkt~gdae~eAIe 337 (415)
T PLN03175 276 ASELKKCPDFYEDLLREDIVMTVRLVVNYNGLKINTVRDAFEKSLRNRLQKMNPNTDYNCLK 337 (415)
T ss_pred HHHHccCHHHHHHHHcCCccEEEEEEEecCCccHHHHHHHHHHHHHHHHhccCCchHHHHHH
Confidence 99999999 99999999999999999999899999999999999999999998866666554
No 3
>PLN02804 chalcone isomerase
Probab=99.96 E-value=1.1e-29 Score=218.19 Aligned_cols=114 Identities=27% Similarity=0.375 Sum_probs=104.7
Q ss_pred CCcccCccccCC---ceeEeeeeeeeEEeeeeeeeEEEEEEEechHHHHHHhhhhcCCCChhhhhhch-HHHHHhhcCcc
Q 028614 88 TGTSFPSVLGGS---RKLLGIGLRKKSVLGLKNIDVYAFGVYADHDDVKKILSEKYGNMSVAELKENK-LNEDLMEADVC 163 (206)
Q Consensus 88 TGIsFP~~L~~~---~~LvG~GvR~ksIlglK~IKVYA~G~YvD~~~lk~~L~~k~~g~p~~EL~~~~-f~edLl~~dv~ 163 (206)
.|++||..++.+ ..|+|+|+|.|+|+|+ +|||||||+|+|+ +++.+|+ ||+|+|++||.+|+ ||+||+++|++
T Consensus 7 ~~v~FP~~i~~ss~~l~L~G~G~R~~~I~~~-~iK~yAiGvYle~-~~~~~L~-kwkgk~a~EL~~~~~Ff~dlv~~p~e 83 (206)
T PLN02804 7 EDIPFPPQITTSSKPLSLLGHGITDIEIHFL-QIKFTAIGVYLEP-SVKGHLQ-SWKGKPGSELAEDDDFFQALIQAPVE 83 (206)
T ss_pred cCcCCCceeecCCCcceEEeecccceEEEeE-EEEEEEEEEEecH-HHHHHHH-HhcCCCHHHHhcCHHHHHHHHcCChh
Confidence 589999999843 4699999999999999 9999999999999 5888995 99999999999999 99999999999
Q ss_pred eEEEEEEeecccchhhHHHHHHHHHHHHhhhcC--CCCchhhhc
Q 028614 164 MTVRLQIIYNKLSIRSVRSAFEESVGSRLQKFG--GSDNKELLQ 205 (206)
Q Consensus 164 ~tVRLViv~~~l~~~~vrdAFeeSL~~RLkk~g--g~~~~el~q 205 (206)
|++||++++ ++++.+|+++|+|++++||++.| +.++.|.|+
T Consensus 84 k~~Ri~~i~-~l~g~qy~~~~ee~~~~rlk~~~~y~d~e~~aL~ 126 (206)
T PLN02804 84 KLIRIVVIK-EIKGSQYGVQLESSVRDRLAEDDKYEEEEEEALE 126 (206)
T ss_pred hEEEEEEEe-cCcCccHHHHHHHHHHHHHhcCCCCcchHHHHHH
Confidence 999999998 69999999999999999999998 445666665
No 4
>PLN02311 chalcone isomerase
Probab=99.96 E-value=2e-29 Score=223.92 Aligned_cols=119 Identities=22% Similarity=0.364 Sum_probs=106.8
Q ss_pred CCCCceeecCCCcccCcccc-----CCceeEeeeeeeeEEeeeeeeeEEEEEEEechHHHHHHhhhhcCCCChhhhhhch
Q 028614 78 NSSATVVESKTGTSFPSVLG-----GSRKLLGIGLRKKSVLGLKNIDVYAFGVYADHDDVKKILSEKYGNMSVAELKENK 152 (206)
Q Consensus 78 ~~~~~vvEPkTGIsFP~~L~-----~~~~LvG~GvR~ksIlglK~IKVYA~G~YvD~~~lk~~L~~k~~g~p~~EL~~~~ 152 (206)
.+...++||+|||+||..++ .++.|.|+|+|+|.|+++ +|||||+|+|+|++.+ ++|+ ||+|.+++||.+++
T Consensus 63 ~~~~~~~ep~TgV~Fp~~v~~~~~s~~L~LnGaGvR~K~I~~~-~vKVYA~GLYL~~~~~-~~L~-kwkgk~a~eL~~~~ 139 (271)
T PLN02311 63 GSAEYAEETATSVKFQRSLTLPGCSSPLSLLGTGYREKVFAII-GVKVYAAGLYVNPSIL-SGLS-AWKGRSADEIQRDS 139 (271)
T ss_pred CcccceecCCcCCcCCccccCCCCCCceeEeeeEEeeEEEeee-eEEEEEEEEEechhhh-hhHh-hhcCCCHHHHhcch
Confidence 44557999999999999997 346799999999999987 9999999999999855 5688 99999999999999
Q ss_pred -HHHHHhhcCcceEEEEEEeecccchhhHHHHHHHHHHHHhhhcCCCCc
Q 028614 153 -LNEDLMEADVCMTVRLQIIYNKLSIRSVRSAFEESVGSRLQKFGGSDN 200 (206)
Q Consensus 153 -f~edLl~~dv~~tVRLViv~~~l~~~~vrdAFeeSL~~RLkk~gg~~~ 200 (206)
||++|+++|.+|++||++++ ++++.+|++||+|++++|+++.++.+.
T Consensus 140 ~ff~dIi~a~~eK~irI~~iR-~v~g~~~~~A~~eg~~~rlk~~~~~~~ 187 (271)
T PLN02311 140 SLFSSIFQAPAEKSLQIVLVR-DVDGKTFWDALDEAISPRIKAPSPDDT 187 (271)
T ss_pred HHHHHHhcCCcceEEEEEEEe-cCCHHHHHHHHHHHHHHHHhccccchH
Confidence 99999999999999999987 699999999999999999977654333
No 5
>PLN02559 chalcone--flavonone isomerase
Probab=99.92 E-value=7e-25 Score=191.17 Aligned_cols=108 Identities=23% Similarity=0.332 Sum_probs=99.3
Q ss_pred CCcccCcccc-----CCceeEeeeeeeeEEeeeeeeeEEEEEEEechHHHHHHhhhhcCCCChhhhhhch-HHHHHhhcC
Q 028614 88 TGTSFPSVLG-----GSRKLLGIGLRKKSVLGLKNIDVYAFGVYADHDDVKKILSEKYGNMSVAELKENK-LNEDLMEAD 161 (206)
Q Consensus 88 TGIsFP~~L~-----~~~~LvG~GvR~ksIlglK~IKVYA~G~YvD~~~lk~~L~~k~~g~p~~EL~~~~-f~edLl~~d 161 (206)
.||+||..++ ....|+|+|+|.|+|+|. +||+||||+|+|++++ ..|.+||+|++++||.++. ||+||+.+|
T Consensus 10 e~i~FP~~v~~p~s~~~l~L~GaG~Rg~eI~~~-~vKftAiGvYle~~av-~~L~~KWKGKsa~EL~~~~~Ff~div~~p 87 (230)
T PLN02559 10 EGVTFPPSVKPPGSSNPLFLGGAGVRGLEIQGK-FIKFTAIGVYLEGNAV-PSLAKKWKGKTAEELADSVAFFRDVVTGD 87 (230)
T ss_pred cceecCCcccCCCCCCceEEEeccccceEEeeE-EEEEEEEEEEechhHH-HHHHHhhCCcCHHHHhcCHHHHHHHHcCc
Confidence 5899999997 235699999999999985 9999999999999977 5677899999999999999 999999999
Q ss_pred cceEEEEEEeecccchhhHHHHHHHHHHHHhhhcCCC
Q 028614 162 VCMTVRLQIIYNKLSIRSVRSAFEESVGSRLQKFGGS 198 (206)
Q Consensus 162 v~~tVRLViv~~~l~~~~vrdAFeeSL~~RLkk~gg~ 198 (206)
+||.+|+++++ .+++.+|++++++...+|++-.|--
T Consensus 88 ~EK~~rV~~I~-~l~G~qy~~kv~e~~~a~~ks~g~y 123 (230)
T PLN02559 88 FEKFTRVTMIL-PLTGEQYSEKVTENCVAIWKSLGIY 123 (230)
T ss_pred chhhEEEEEEE-eccccchHHHHhHHHHHHHHhcCCc
Confidence 99999999999 5999999999999999999988644
No 6
>PF02431 Chalcone: Chalcone-flavanone isomerase; InterPro: IPR003466 Chalcone isomerase (5.5.1.6 from EC) also known as chalcone-flavanone isomerase, is a plant enzyme responsible for the isomerisation of chalcone to naringenin a key step in the biosynthesis of flavonoids. The Petunia hybrida (Petunia) genome contains two genes coding for very similar enzymes, ChiA and ChiB, but only the first seems to encode a functional chalcone isomerase. Chalcone isomerase has a core 2-layer alpha/beta structure consisting of beta(3)-alpha(2)-beta-alpha(2)-beta(3) []. This entry represents a subgroup of Chalcone isomerase.; GO: 0016872 intramolecular lyase activity, 0042398 cellular modified amino acid biosynthetic process; PDB: 1JX0_B 1JEP_A 1EYP_B 1JX1_B 1EYQ_B 1FM8_A 1FM7_A 4DOL_A 4DOI_A 4DOK_B ....
Probab=99.92 E-value=4.5e-25 Score=184.17 Aligned_cols=101 Identities=37% Similarity=0.621 Sum_probs=87.6
Q ss_pred cCcccc-----CCceeEeeeeeeeEEeeeeeeeEEEEEEEechHHHHHHhhhhcCCCChh-hhhhch-HHHHHhhcCcce
Q 028614 92 FPSVLG-----GSRKLLGIGLRKKSVLGLKNIDVYAFGVYADHDDVKKILSEKYGNMSVA-ELKENK-LNEDLMEADVCM 164 (206)
Q Consensus 92 FP~~L~-----~~~~LvG~GvR~ksIlglK~IKVYA~G~YvD~~~lk~~L~~k~~g~p~~-EL~~~~-f~edLl~~dv~~ 164 (206)
||.+|+ ++.+|+|+|+|+|+|+ +|||||+|+|+|+++++++++ +|.+...+ ++++++ ||++|++++++|
T Consensus 1 FP~~i~~p~~~~~l~L~G~GvR~~~~~---~ikVYavG~Yv~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ll~~~~~k 76 (199)
T PF02431_consen 1 FPKKITSPTSSEELSLLGAGVRTVSFL---NIKVYAVGLYVDDSDAKKLLK-KWKGKSASDDLEKSEDFFDDLLDSPVEK 76 (199)
T ss_dssp EESEEE-TTTSSEEEEEEEEEEEEEET---EEEEEEEEEEEECCHHHHHHH-HHTTT-HHHHHHT-HHHHHHHHHSSS-E
T ss_pred CCCcccCCCCCCCeEEEEEEEeeEEEE---EEEEEEEEEEEChhHhhhHHH-hhhcccCcccccccHHHHHHHhcCCccE
Confidence 677766 4478999999999998 568999999999999998776 67777776 899989 999999999999
Q ss_pred EEEEEEeecccchhhHHHHHHHHHHHHhhhcCC
Q 028614 165 TVRLQIIYNKLSIRSVRSAFEESVGSRLQKFGG 197 (206)
Q Consensus 165 tVRLViv~~~l~~~~vrdAFeeSL~~RLkk~gg 197 (206)
++||+++|+ ++++|++|+|+|+|.+|+++.+.
T Consensus 77 ~iri~~~R~-~~~~~l~d~~~~~i~~r~~~~~~ 108 (199)
T PF02431_consen 77 AIRIVPVRN-VDGKHLRDAFIESIRPRLKAAGT 108 (199)
T ss_dssp EEEEEESSS-EEHHHHHHHHHHHHHHHHHHTT-
T ss_pred EEEEEEEec-CCHHHHHHHHHHHHHHHHhhccc
Confidence 999999995 99999999999999999999864
No 7
>PLN03174 Chalcone-flavanone isomerase-related; Provisional
Probab=75.48 E-value=2.7 Score=38.38 Aligned_cols=31 Identities=39% Similarity=0.352 Sum_probs=18.3
Q ss_pred cccccCCCCCCCCCCCCchhHHHHHHHHHHhhh
Q 028614 5 RFPFSFSQPSNLPHTATRSFSVAVTAAAAAATA 37 (206)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 (206)
-||=+.-+|+ .+.....++++++++++++++
T Consensus 9 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 39 (278)
T PLN03174 9 SFSQPPRAPS--FFAAAAAVAAAAAAAAAAAAA 39 (278)
T ss_pred ccCCCCCCCC--cchHHHHHHHHHHHHHHHHHH
Confidence 3666666676 555566666666665554443
No 8
>PF10126 Nit_Regul_Hom: Uncharacterized protein, homolog of nitrogen regulatory protein PII; InterPro: IPR019296 This family consists of various hypothetical archaeal proteins. It includes a putative nitrogen regulatory protein PII homolog.
Probab=53.71 E-value=12 Score=30.37 Aligned_cols=49 Identities=22% Similarity=0.363 Sum_probs=25.4
Q ss_pred hcCCCChhhhhhchHHHHHhhcCcceEE--------EEEEeecccchhhHHHHHHHHHHHHhh
Q 028614 139 KYGNMSVAELKENKLNEDLMEADVCMTV--------RLQIIYNKLSIRSVRSAFEESVGSRLQ 193 (206)
Q Consensus 139 k~~g~p~~EL~~~~f~edLl~~dv~~tV--------RLViv~~~l~~~~vrdAFeeSL~~RLk 193 (206)
.|+|+|+.+.++ | ++++|.+|++ +-|++..-++.+.+ +-+++.+..||+
T Consensus 35 eYkGmSP~~wkg--f---~l~EDpe~ai~~I~d~s~~aV~I~TVV~~~~~-~~i~~~i~ekL~ 91 (110)
T PF10126_consen 35 EYKGMSPQDWKG--F---LLDEDPEMAIKAINDLSENAVLIGTVVDEEKV-EKIEKLIKEKLK 91 (110)
T ss_pred eecCCChHHhcC--c---ccccCHHHHHHHHHHhccCcEEEEEEECHHHH-HHHHHHHHHHhc
Confidence 477888776554 1 1122222222 23333333555555 667777777775
No 9
>PF04282 DUF438: Family of unknown function (DUF438); InterPro: IPR007380 This is a a group of uncharacterised proteins.
Probab=49.06 E-value=25 Score=26.19 Aligned_cols=33 Identities=18% Similarity=0.491 Sum_probs=28.5
Q ss_pred chHHHHHHhhhhcCCCChhhhhhchHHHHHhhcCc
Q 028614 128 DHDDVKKILSEKYGNMSVAELKENKLNEDLMEADV 162 (206)
Q Consensus 128 D~~~lk~~L~~k~~g~p~~EL~~~~f~edLl~~dv 162 (206)
|++++|+.+...+++.++.|+.. .-+.||.+++
T Consensus 14 ~~e~vk~~F~~~~~~Vs~~EI~~--~Eq~Li~eG~ 46 (71)
T PF04282_consen 14 DPEEVKEEFKKLFSDVSASEISA--AEQELIQEGM 46 (71)
T ss_pred CHHHHHHHHHHHHCCCCHHHHHH--HHHHHHHcCC
Confidence 77889999999999999999988 7888887643
No 10
>PF00952 Bunya_nucleocap: Bunyavirus nucleocapsid (N) protein; InterPro: IPR001784 Orthobunyavirus are enveloped viruses with a genome consisting of 3 ssRNA segments (called L, M and S). The nucleocapsid protein is encode on the small (S) genomic RNA. The N protein is the major component of the nucleocapsids. This protein is thought to interact with the L protein, virus RNA and/or other N proteins [].; GO: 0019013 viral nucleocapsid
Probab=35.37 E-value=23 Score=31.83 Aligned_cols=72 Identities=28% Similarity=0.487 Sum_probs=48.6
Q ss_pred eeeeeeEE--EEEEE------echHHHHHHhhhhcCCCChhhhhhchHHHHHhhcCcceEEEEEEeecccchhhHHHHHH
Q 028614 114 GLKNIDVY--AFGVY------ADHDDVKKILSEKYGNMSVAELKENKLNEDLMEADVCMTVRLQIIYNKLSIRSVRSAFE 185 (206)
Q Consensus 114 glK~IKVY--A~G~Y------vD~~~lk~~L~~k~~g~p~~EL~~~~f~edLl~~dv~~tVRLViv~~~l~~~~vrdAFe 185 (206)
+++..|+| |||+| +|++=+++.|..+|.++++++--..+ +.++.. -++ ++ ++++| -+.+|.
T Consensus 146 FL~tFkFyPLaIgi~RV~k~~Md~~fl~K~lRQrY~g~~a~~Wm~~k-~~~I~~-A~~------~V-~~l~w--~k~~~s 214 (228)
T PF00952_consen 146 FLETFKFYPLAIGIYRVKKDMMDPKFLKKALRQRYGGLTAEQWMTQK-IVAIQA-AFK------VV-EKLPW--AKSGFS 214 (228)
T ss_pred HHhcceecceeeehhhHhhcCCCHHHHHHHHHHHhCCCCHHHHHHHH-HHHHHH-HHH------HH-HcCCc--ccccCc
Confidence 56678888 88888 89999999999999999998755533 111111 111 11 12333 456888
Q ss_pred HHHHHHhhhcC
Q 028614 186 ESVGSRLQKFG 196 (206)
Q Consensus 186 eSL~~RLkk~g 196 (206)
.+.+.=|+|+|
T Consensus 215 ~aAr~FL~kFG 225 (228)
T PF00952_consen 215 PAAREFLSKFG 225 (228)
T ss_pred HHHHHHHHHhC
Confidence 88888888886
No 11
>PF03780 Asp23: Asp23 family; InterPro: IPR005531 This entry represents the alkaline shock protein 23 family. These small proteins are involved in alkaline pH tolerance of Staphylococcus aureus [,].
Probab=33.30 E-value=82 Score=23.32 Aligned_cols=42 Identities=14% Similarity=0.360 Sum_probs=36.5
Q ss_pred hcCcceEEEEEEeecccchhhHHHHHHHHHHHHhhhcCCCCch
Q 028614 159 EADVCMTVRLQIIYNKLSIRSVRSAFEESVGSRLQKFGGSDNK 201 (206)
Q Consensus 159 ~~dv~~tVRLViv~~~l~~~~vrdAFeeSL~~RLkk~gg~~~~ 201 (206)
+..+...+.+++.| +.++..+-..+++.+...+.+++|-+..
T Consensus 57 ~~~i~v~l~v~v~~-g~~i~~v~~~iq~~V~~~v~~~tg~~v~ 98 (108)
T PF03780_consen 57 DGGITVDLHVVVEY-GVNIPEVAEEIQEKVKEAVEEMTGIEVS 98 (108)
T ss_pred CcceEEEEEEEEEC-CccHHHHHHHHHHHHHHHHHHHHCCeeE
Confidence 35778889999999 5899999999999999999999886644
No 12
>cd07914 IGPD Imidazoleglycerol-phosphate dehydratase. Imidazoleglycerol-phosphate dehydratase (IGPD; EC 4.2.1.19) catalyzes the dehydration of imidazole glycerol phosphate to imidazole acetol phosphate, the sixth step of histidine biosynthesis in plants and microorganisms where the histidine is synthesized de novo. There is an internal repeat in the protein domain that is related by pseudo-dyad symmetry, perhaps as a result of an ancient gene duplication. The apo-form of IGPD exists as a catalytically inactive trimer which, in the presence of specific divalent metal cations such as manganese (Mn2+), cobalt (Co2+), cadmium (Cd2+), nickel (Ni2+), iron (Fe2+) and zinc (Zn2+), assembles to form a biologically active high molecular weight metalloenzyme; a 24-mer with 4-3-2 symmetry. Each 24-mer has 24 active sites, and contains around 1.5 metal ions per monomer, each monomer contributing residues to three separate active sites. IGPD enzymes are monofunctional in fungi, plants, archaea and s
Probab=33.05 E-value=1.5e+02 Score=25.91 Aligned_cols=58 Identities=16% Similarity=0.298 Sum_probs=43.1
Q ss_pred hhcCCCChhhhhhchHHHHHhhcCcceEEEEEEeecccchhhHHHHHHHHHHHHhhhcCCCC
Q 028614 138 EKYGNMSVAELKENKLNEDLMEADVCMTVRLQIIYNKLSIRSVRSAFEESVGSRLQKFGGSD 199 (206)
Q Consensus 138 ~k~~g~p~~EL~~~~f~edLl~~dv~~tVRLViv~~~l~~~~vrdAFeeSL~~RLkk~gg~~ 199 (206)
++.++.+.+-+++ ||+.+.. +-.+|+-|.+.|+ -+--|.-++.=++++--|+++...+
T Consensus 121 ~~iG~~~telv~~--Ff~s~a~-~a~~tlHi~~~~G-~N~HH~~Ea~FKalgrALr~A~~~~ 178 (190)
T cd07914 121 EKIGDFDTELVEE--FFRSFAN-NAGITLHIRVLYG-RNDHHIIEAIFKAFARALRQAVAID 178 (190)
T ss_pred CccCCCChHHHHH--HHHHHHh-cCCCeEEEEEeec-CChHHHHHHHHHHHHHHHHHHhCcC
Confidence 4556677666666 9999986 5588999988884 6777877777777777777775443
No 13
>PLN02800 imidazoleglycerol-phosphate dehydratase
Probab=29.93 E-value=1.5e+02 Score=27.22 Aligned_cols=58 Identities=17% Similarity=0.315 Sum_probs=42.0
Q ss_pred hhcCCCChhhhhhchHHHHHhhcCcceEEEEEEe-ecccchhhHHHHHHHHHHHHhhhcCCCC
Q 028614 138 EKYGNMSVAELKENKLNEDLMEADVCMTVRLQII-YNKLSIRSVRSAFEESVGSRLQKFGGSD 199 (206)
Q Consensus 138 ~k~~g~p~~EL~~~~f~edLl~~dv~~tVRLViv-~~~l~~~~vrdAFeeSL~~RLkk~gg~~ 199 (206)
++.++.+.+-+++ ||+.+.. +-.+|+-|.+. | +-+--|.-++.=++++--|+++...+
T Consensus 187 ~~iG~~~telv~h--Ff~s~a~-~a~~tLHi~~l~~-G~N~HH~~EA~FKAfgrALr~A~~~~ 245 (261)
T PLN02800 187 ERVGDLDTEMVEH--FFQSLVN-NSGMTVHIRQLAA-GKNSHHIIEATAKAFGRALRQCAEVD 245 (261)
T ss_pred cccCCCchHHHHH--HHHHHHh-cCCCEEEEEeccc-CCcHHHHHHHHHHHHHHHHHHHhccC
Confidence 3455666666666 9999987 56899999877 7 46777777777777777777775443
No 14
>PRK13598 hisB imidazoleglycerol-phosphate dehydratase; Provisional
Probab=24.82 E-value=2.2e+02 Score=25.00 Aligned_cols=58 Identities=9% Similarity=0.128 Sum_probs=42.6
Q ss_pred hhcCCCChhhhhhchHHHHHhhcCcceEEEEEEeecccchhhHHHHHHHHHHHHhhhcCCCC
Q 028614 138 EKYGNMSVAELKENKLNEDLMEADVCMTVRLQIIYNKLSIRSVRSAFEESVGSRLQKFGGSD 199 (206)
Q Consensus 138 ~k~~g~p~~EL~~~~f~edLl~~dv~~tVRLViv~~~l~~~~vrdAFeeSL~~RLkk~gg~~ 199 (206)
++.++.+.+-+++ ||+.+.. +-.+|+-|.+.|+ -+--|.-+|.=++++--|+++...+
T Consensus 125 ~~iG~~~~elv~~--Ff~s~a~-~a~~tlHi~~~~G-~N~HH~~EA~FKA~g~ALr~A~~~~ 182 (193)
T PRK13598 125 SEIGGLATENIPH--FFQSFAY-NSGVTLHISQLSG-YNTHHIIEASFKGLGLALYEATRIV 182 (193)
T ss_pred cccCCCchhhHHH--HHHHHHh-cCCCeEEEEEccC-CChHHHHHHHHHHHHHHHHHHhccC
Confidence 3445667666666 9999986 5589999988884 6778887887788777777775433
No 15
>PRK00951 hisB imidazoleglycerol-phosphate dehydratase; Validated
Probab=24.15 E-value=2.4e+02 Score=24.76 Aligned_cols=56 Identities=16% Similarity=0.303 Sum_probs=41.0
Q ss_pred hhcCCCChhhhhhchHHHHHhhcCcceEEEEEEeecccchhhHHHHHHHHHHHHhhhcCC
Q 028614 138 EKYGNMSVAELKENKLNEDLMEADVCMTVRLQIIYNKLSIRSVRSAFEESVGSRLQKFGG 197 (206)
Q Consensus 138 ~k~~g~p~~EL~~~~f~edLl~~dv~~tVRLViv~~~l~~~~vrdAFeeSL~~RLkk~gg 197 (206)
++.++.+.+-+++ ||+.+.. +-.+|+-|.+.|+ -+--|.-+|.=++++--|+++..
T Consensus 125 ~~iG~~~tel~~~--Ff~s~a~-~a~~tlHi~~~~G-~N~HH~~Ea~FKa~g~ALr~A~~ 180 (195)
T PRK00951 125 EKIGTFDTELVRE--FFEAFAN-NAGITLHIRVLYG-RNAHHIIEALFKAFARALRMAVE 180 (195)
T ss_pred cccCCCchHHHHH--HHHHHHh-cCCCeEEEEeccc-CChHHHHHHHHHHHHHHHHHHhc
Confidence 3455677666666 9999987 5689999988884 57777777777777777776653
No 16
>cd01470 vWA_complement_factors Complement factors B and C2 are two critical proteases for complement activation. They both contain three CCP or Sushi domains, a trypsin-type serine protease domain and a single VWA domain with a conserved metal ion dependent adhesion site referred commonly as the MIDAS motif. Orthologues of these molecules are found from echinoderms to chordates. During complement activation, the CCP domains are cleaved off, resulting in the formation of an active protease that cleaves and activates complement C3. Complement C2 is in the classical pathway and complement B is in the alternative pathway. The interaction of C2 with C4 and of factor B with C3b are both dependent on Mg2+ binding sites within the VWA domains and the VWA domain of factor B has been shown to mediate the binding of C3. This is consistent with the common inferred function of VWA domains as magnesium-dependent protein interaction domains.
Probab=22.81 E-value=65 Score=26.22 Aligned_cols=18 Identities=33% Similarity=0.796 Sum_probs=13.4
Q ss_pred eeeEEEEEE--EechHHHHH
Q 028614 117 NIDVYAFGV--YADHDDVKK 134 (206)
Q Consensus 117 ~IKVYA~G~--YvD~~~lk~ 134 (206)
+|.||+||+ ++|.+.+++
T Consensus 154 ~v~i~~iGvG~~~~~~~L~~ 173 (198)
T cd01470 154 YLDVYVFGVGDDVNKEELND 173 (198)
T ss_pred ceeEEEEecCcccCHHHHHH
Confidence 467999999 677776654
No 17
>PF05402 PqqD: Coenzyme PQQ synthesis protein D (PqqD); InterPro: IPR008792 This family contains several bacterial coenzyme PQQ synthesis protein D (PqqD) sequences. This protein is required for coenzyme pyrrolo-quinoline-quinone (PQQ) biosynthesis.; PDB: 3G2B_A.
Probab=21.61 E-value=1.2e+02 Score=20.51 Aligned_cols=31 Identities=26% Similarity=0.469 Sum_probs=20.7
Q ss_pred HHHHHHhhhhcCCCChhhhhhch--HHHHHhhcC
Q 028614 130 DDVKKILSEKYGNMSVAELKENK--LNEDLMEAD 161 (206)
Q Consensus 130 ~~lk~~L~~k~~g~p~~EL~~~~--f~edLl~~d 161 (206)
+.+.+.|.++| +.+.++++++= |.+.|.+.+
T Consensus 33 ~ei~~~l~~~y-~~~~~~~~~dv~~fl~~L~~~g 65 (68)
T PF05402_consen 33 EEIVDALAEEY-DVDPEEAEEDVEEFLEQLREKG 65 (68)
T ss_dssp HHHHHHHHHHT-T--HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHCc
Confidence 45666788888 78888876655 888887654
No 18
>PF00475 IGPD: Imidazoleglycerol-phosphate dehydratase; InterPro: IPR000807 Imidazoleglycerol-phosphate dehydratase is the enzyme that catalyses the seventh step in the biosynthesis of histidine in bacteria, fungi and plants. In most organisms it is a monofunctional protein of about 22 to 29 kD. In some bacteria such as Escherichia coli, it is the C-terminal domain of a bifunctional protein that include a histidinol-phosphatase domain [].; GO: 0004424 imidazoleglycerol-phosphate dehydratase activity, 0000105 histidine biosynthetic process; PDB: 2F1D_G 2AE8_A 1RHY_B.
Probab=20.03 E-value=2.1e+02 Score=24.00 Aligned_cols=52 Identities=17% Similarity=0.354 Sum_probs=38.7
Q ss_pred hhcCCCChhhhhhchHHHHHhhcCcceEEEEEEeecccchhhHHHHHHHHHHHHhh
Q 028614 138 EKYGNMSVAELKENKLNEDLMEADVCMTVRLQIIYNKLSIRSVRSAFEESVGSRLQ 193 (206)
Q Consensus 138 ~k~~g~p~~EL~~~~f~edLl~~dv~~tVRLViv~~~l~~~~vrdAFeeSL~~RLk 193 (206)
++.++.+.+-+++ |++.+.. +-.+|+-|.+.| +-+--|.-+|.=++++--|+
T Consensus 94 ~~iG~~~~el~~~--F~~sla~-~~~~tlHi~~~~-G~N~HH~~Ea~FKa~grALR 145 (145)
T PF00475_consen 94 EKIGDFDTELVEH--FFRSLAN-NAGITLHIRVLY-GENDHHIIEAIFKAFGRALR 145 (145)
T ss_dssp SEETTEETTHHHH--HHHHHHH-HHTEEEEEEEEE--SSHHHHHHHHHHHHHHHHH
T ss_pred cccCCCChhhHHH--HHHHHHH-hCCceEEEEEEe-CCChHHHHHHHHHHHHHHhC
Confidence 4555667666666 9999986 558899998888 46888888888888776554
Done!