Query 028614
Match_columns 206
No_of_seqs 87 out of 89
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 23:57:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028614.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028614hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4doo_A Chalcone-flavanone isom 100.0 2.2E-35 7.6E-40 247.3 13.2 126 80-205 2-128 (205)
2 4dok_A Similarity to chalcone- 100.0 1.6E-28 5.4E-33 208.7 11.5 114 88-204 8-126 (208)
3 4dol_A AT1G53520, 94270-95700, 99.9 6E-28 2E-32 203.2 9.1 114 80-197 11-130 (217)
4 4doi_A Chalcone--flavonone iso 99.9 1.4E-27 4.9E-32 208.0 10.9 110 87-199 21-136 (246)
5 1eyq_A Chalcone-flavonone isom 99.9 9.8E-27 3.3E-31 198.8 11.4 109 87-198 10-124 (222)
6 3zqk_A VON willebrand factor; 33.3 26 0.00089 27.1 2.7 19 116-134 146-166 (199)
7 2pq4_B Periplasmic nitrate red 18.9 68 0.0023 19.8 2.1 15 19-33 3-17 (35)
8 2daj_A KIAA0977 protein, COBL- 18.4 46 0.0016 25.1 1.4 12 163-174 8-19 (91)
9 1q0p_A Complement factor B; VO 18.0 58 0.002 24.8 2.0 18 117-134 169-188 (223)
10 3jyw_F 60S ribosomal protein L 17.4 72 0.0025 26.5 2.6 14 163-176 171-184 (213)
No 1
>4doo_A Chalcone-flavanone isomerase family protein; chalcone-isomerase like fold, fatty-acid binding; HET: DAO; 1.90A {Arabidopsis thaliana}
Probab=100.00 E-value=2.2e-35 Score=247.31 Aligned_cols=126 Identities=69% Similarity=1.101 Sum_probs=118.0
Q ss_pred CCceeecCCCcccCccccCCceeEeeeeeeeEEeeeeeeeEEEEEEEechHHHHHHhhhhcCCCChhhhhhch-HHHHHh
Q 028614 80 SATVVESKTGTSFPSVLGGSRKLLGIGLRKKSVLGLKNIDVYAFGVYADHDDVKKILSEKYGNMSVAELKENK-LNEDLM 158 (206)
Q Consensus 80 ~~~vvEPkTGIsFP~~L~~~~~LvG~GvR~ksIlglK~IKVYA~G~YvD~~~lk~~L~~k~~g~p~~EL~~~~-f~edLl 158 (206)
++.+|||+|||+||..++.+++|+|+|+|+|+|+|+|+|||||+|+|+|+++++++|++||++++++||++++ ||++|+
T Consensus 2 ~~~~vep~tgv~FP~~~~~~~~L~G~GvR~~~i~~~~~ikvYa~GlYl~~~~~~~~L~~k~~~~~~~el~~~~~~~~~il 81 (205)
T 4doo_A 2 DESVVEPKTGFSFPASIGDSRRLLGVGLRKKSLLGLKNIDVYAFGVYADCDDVKKLVGDKYANLPASEIRGNKSFMDDLM 81 (205)
T ss_dssp -CCEECTTTCCEECSEETTTEEEEEEEEEEEECSTTCEEEEEEEEEEEEHHHHHHHHHHHSTTCCHHHHHTCTTHHHHHH
T ss_pred CCccccCCcCCcCCCccCCCceEEEeeeeEEEEeeccceEEEEEEEEeCHHHHHHHHHhhhcCCCHHHHcccHHHHHHHH
Confidence 4679999999999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred hcCcceEEEEEEeecccchhhHHHHHHHHHHHHhhhcCCCCchhhhc
Q 028614 159 EADVCMTVRLQIIYNKLSIRSVRSAFEESVGSRLQKFGGSDNKELLQ 205 (206)
Q Consensus 159 ~~dv~~tVRLViv~~~l~~~~vrdAFeeSL~~RLkk~gg~~~~el~q 205 (206)
+++++|++||+++|++++.+|++++|++++++|+++.++.+..+.++
T Consensus 82 ~~~~~k~iri~~~~~~i~~~~~~da~~~~i~~~~~~~~~~~~~~~l~ 128 (205)
T 4doo_A 82 EADIKMTIRLQIVYGKLNIRSVRNAFQESVGNRLKKFGGSDNDELLQ 128 (205)
T ss_dssp HSCCCEEEEEEECCSCCCHHHHHHHHHHHHHHHHHHHSCSCCHHHHH
T ss_pred cCCCceEEEEEEEecCCCHHHHHHHHHHHHHHHhhhccchhHHHHHH
Confidence 99999999999998779999999999999999999998766655443
No 2
>4dok_A Similarity to chalcone-flavonone isomerase; chalcone-isomerase like protein, chalcone-isomerase like FOL isomerase; 1.70A {Arabidopsis thaliana}
Probab=99.95 E-value=1.6e-28 Score=208.67 Aligned_cols=114 Identities=25% Similarity=0.348 Sum_probs=104.2
Q ss_pred CCcccCccccCC--ceeEeeeeeeeEEeeeeeeeEEEEEEEechHHHHHHhhhhcCCCChhhhhhch-HHHHHhhcCcce
Q 028614 88 TGTSFPSVLGGS--RKLLGIGLRKKSVLGLKNIDVYAFGVYADHDDVKKILSEKYGNMSVAELKENK-LNEDLMEADVCM 164 (206)
Q Consensus 88 TGIsFP~~L~~~--~~LvG~GvR~ksIlglK~IKVYA~G~YvD~~~lk~~L~~k~~g~p~~EL~~~~-f~edLl~~dv~~ 164 (206)
.||+||..++.+ ..|+|+|+|.|+|+|+ .|||||+|+|+|+++++.+| +||++++++||.+++ ||++|+..|++|
T Consensus 8 ~gv~FP~~~~~~~~L~L~GaGvR~~~I~~~-~iKvYa~GlYl~~~~~~~~l-~kwk~~~~~eL~~~~~f~~~ii~~p~eK 85 (208)
T 4dok_A 8 HEVPFPPQIITSKPLSLLGQGITDIEIHFL-QVKFTAIGVYLDPSDVKTHL-DNWKGKTGKELAGDDDFFDALASAEMEK 85 (208)
T ss_dssp TTEEECSEEESSSEEEEEEEEEEEEEETTE-EEEEEEEEEEECHHHHHHHC-GGGTTCCHHHHHTCHHHHHHHHHSSSCE
T ss_pred ccEECCccccCCCcceeeeeeeeeEeeeee-EEEEEEEEEEecHHHHHHHH-hhhcCCCHHHHccchHHHHHHhcCcccc
Confidence 499999999855 4599999999999998 89999999999999999999 799999999999999 999999999999
Q ss_pred EEEEEEeecccchhhHHHHHHHHHHHHhhhcCCC--Cchhhh
Q 028614 165 TVRLQIIYNKLSIRSVRSAFEESVGSRLQKFGGS--DNKELL 204 (206)
Q Consensus 165 tVRLViv~~~l~~~~vrdAFeeSL~~RLkk~gg~--~~~el~ 204 (206)
++||++++ ++++.+|+++|+|++++|+++.+.- +++|.|
T Consensus 86 ~iri~~ir-~l~g~~~~~a~~e~~~~~~~~~~~~~~~e~~aL 126 (208)
T 4dok_A 86 VIRVVVIK-EIKGAQYGVQLENTVRDRLAEEDKYEEEEETEL 126 (208)
T ss_dssp EEEEEESS-CEEHHHHHHHHHHHHHHHHHHTTCCSHHHHHHH
T ss_pred eEEEEEEe-cCCcHHHHHHHHHHHHHHHhccCCcchHHHHHH
Confidence 99999998 6999999999999999999999863 344444
No 3
>4dol_A AT1G53520, 94270-95700, chalcon; chalcone-isomerase like fold, fatty-acid binding, isomerase; HET: PLM; 1.70A {Arabidopsis thaliana}
Probab=99.95 E-value=6e-28 Score=203.21 Aligned_cols=114 Identities=20% Similarity=0.346 Sum_probs=104.5
Q ss_pred CCceeecCCCcccCccccC-----CceeEeeeeeeeEEeeeeeeeEEEEEEEechHHHHHHhhhhcCCCChhhhhhch-H
Q 028614 80 SATVVESKTGTSFPSVLGG-----SRKLLGIGLRKKSVLGLKNIDVYAFGVYADHDDVKKILSEKYGNMSVAELKENK-L 153 (206)
Q Consensus 80 ~~~vvEPkTGIsFP~~L~~-----~~~LvG~GvR~ksIlglK~IKVYA~G~YvD~~~lk~~L~~k~~g~p~~EL~~~~-f 153 (206)
...+|||+|||+||..++. ..+|+|+|+|+|.|.++ +||||++|+|++++.+ .+|+ ||++.+++||.+++ |
T Consensus 11 ~~~v~e~~tgv~fp~~~~~~~~~~~l~L~G~GvR~~~i~~~-~ikvYa~glYl~~~~~-~~L~-~~~~~~~~el~~~~~~ 87 (217)
T 4dol_A 11 EDYAEETATSVKFKRSVTLPGCSSPLSLLGTGFREKKFAII-GVKVYAAGYYVNESIL-SGLS-AWTGRSADEIQRDSSL 87 (217)
T ss_dssp CCEEECTTTCCEEESEECCTTCSSCEEEEEEEEEEEESSSS-EEEEEEEEEEECGGGT-GGGG-GGTTCCHHHHHTCHHH
T ss_pred cceeecCCCCccCCCcccCCCCCCceEEEEEEEEEEEEeee-EEEEEEEEEEcCHHHH-HHHH-hhcCCCHHHHcccHHH
Confidence 3469999999999999983 35799999999999888 8999999999999855 5788 99999999999999 9
Q ss_pred HHHHhhcCcceEEEEEEeecccchhhHHHHHHHHHHHHhhhcCC
Q 028614 154 NEDLMEADVCMTVRLQIIYNKLSIRSVRSAFEESVGSRLQKFGG 197 (206)
Q Consensus 154 ~edLl~~dv~~tVRLViv~~~l~~~~vrdAFeeSL~~RLkk~gg 197 (206)
|+++++.+++|++||+++|+ +++.+++++|+|++++|+++.+.
T Consensus 88 ~~~il~~~~~k~lri~~~R~-i~~~~l~~a~~e~i~~~~~~~~~ 130 (217)
T 4dol_A 88 FVSIFQAQAEKSLQIVLVRD-VDGKTFWDALDEAISPRIKSPSS 130 (217)
T ss_dssp HHHHHHSSSCEEEEEEESSC-BCHHHHHHHHHHHHTTTCSSCCH
T ss_pred HHHHHcCCCceEEEEEEEec-CCHHHHHHHHHHHHHHHHHhcch
Confidence 99999999999999999985 99999999999999999988763
No 4
>4doi_A Chalcone--flavonone isomerase 1; chalcone-flavanone isomerase; 1.55A {Arabidopsis thaliana}
Probab=99.94 E-value=1.4e-27 Score=208.01 Aligned_cols=110 Identities=17% Similarity=0.215 Sum_probs=101.8
Q ss_pred CCCcccCccccC---C--ceeEeeeeeeeEEeeeeeeeEEEEEEEechHHHHHHhhhhcCCCChhhhhhch-HHHHHhhc
Q 028614 87 KTGTSFPSVLGG---S--RKLLGIGLRKKSVLGLKNIDVYAFGVYADHDDVKKILSEKYGNMSVAELKENK-LNEDLMEA 160 (206)
Q Consensus 87 kTGIsFP~~L~~---~--~~LvG~GvR~ksIlglK~IKVYA~G~YvD~~~lk~~L~~k~~g~p~~EL~~~~-f~edLl~~ 160 (206)
-+||+||..++. + +.|+|+|+|+|+|+|+ .|||||+|+|+|++ ++.+|++||+|++++||.+++ ||++|+..
T Consensus 21 V~gV~FP~~v~~p~~~~~L~L~GaGvR~k~I~~~-~vKvYAiGlYl~~~-~~~~L~~kwkgk~~~eL~~~~~ff~~il~~ 98 (246)
T 4doi_A 21 VDSVTFVPSVKSPASSNPLFLGGAGVRGLDIQGK-FVIFTVIGVYLEGN-AVPSLSVKWKGKTTEELTESIPFFREIVTG 98 (246)
T ss_dssp ETTEEECSEEECTTTCCEEEEEEEEEEEEEETTE-EEEEEEEEEEECTT-HHHHHHHHHTTCCHHHHHHCHHHHHHHHHC
T ss_pred ECceECCCeeccCCCCCceeEecceeeceeeeee-EEEEEEEEEEechh-HHHHhhhhhcCCCHHHhcccHHHHHHHHcC
Confidence 469999999973 3 5699999999999998 89999999999997 778899999999999999999 99999999
Q ss_pred CcceEEEEEEeecccchhhHHHHHHHHHHHHhhhcCCCC
Q 028614 161 DVCMTVRLQIIYNKLSIRSVRSAFEESVGSRLQKFGGSD 199 (206)
Q Consensus 161 dv~~tVRLViv~~~l~~~~vrdAFeeSL~~RLkk~gg~~ 199 (206)
|++|+|||+++| ++++.+|+++|+|++++|+++.|...
T Consensus 99 p~eK~lrl~~ir-~l~g~~~~~al~e~l~~rlk~~g~~~ 136 (246)
T 4doi_A 99 AFEKFIKVTMKL-PLTGQQYSEKVTENCVAIWKQLGLYT 136 (246)
T ss_dssp SSCEEEEEEESS-CEEHHHHHHHHTTTHHHHHHHHTCCC
T ss_pred CcceEEEEEEEe-cCCHHHHHHHHHHHHHHHHHhcCCcc
Confidence 999999999998 69999999999999999999987653
No 5
>1eyq_A Chalcone-flavonone isomerase 1; chalcone isomerase, flavonoid; HET: NAR; 1.85A {Medicago sativa} SCOP: d.36.1.1 PDB: 1eyp_A* 1fm7_A* 1fm8_A* 1jep_A* 1jx0_A* 1jx1_A*
Probab=99.94 E-value=9.8e-27 Score=198.80 Aligned_cols=109 Identities=25% Similarity=0.255 Sum_probs=100.7
Q ss_pred CCCcccCccccC-----CceeEeeeeeeeEEeeeeeeeEEEEEEEechHHHHHHhhhhcCCCChhhhhhch-HHHHHhhc
Q 028614 87 KTGTSFPSVLGG-----SRKLLGIGLRKKSVLGLKNIDVYAFGVYADHDDVKKILSEKYGNMSVAELKENK-LNEDLMEA 160 (206)
Q Consensus 87 kTGIsFP~~L~~-----~~~LvG~GvR~ksIlglK~IKVYA~G~YvD~~~lk~~L~~k~~g~p~~EL~~~~-f~edLl~~ 160 (206)
-|||+||..++. ++.|+|+|+|.|.|+++ .|||||+|+|+|++ +..+|..||+|.+++||.+++ ||++|+++
T Consensus 10 v~gv~FP~~~~~p~~~~~L~L~GaGvR~k~i~~~-~iKvYa~GlYl~~~-~~~~L~~k~kg~~a~el~~~~~f~~~li~~ 87 (222)
T 1eyq_A 10 VENLEYPAVVTSPVTGKSYFLGGAGERGLTIEGN-FIKFTAIGVYLEDI-AVASLAAKWKGKSSEELLETLDFYRDIISG 87 (222)
T ss_dssp ETTEEECSEEECTTTCCEEEEEEEEEEEEEETTE-EEEEEEEEEEEETT-HHHHHHHHHTTCCHHHHHTCHHHHHHHHHC
T ss_pred EcceECCCccccCCCCCceEEeeeEEEEEEeece-EEEEEEEEEEeCHH-HhhHhhhhhcCCCHHHhcccHHHHHHHHcC
Confidence 589999999972 36799999999999886 99999999999997 667899999999999999999 99999999
Q ss_pred CcceEEEEEEeecccchhhHHHHHHHHHHHHhhhcCCC
Q 028614 161 DVCMTVRLQIIYNKLSIRSVRSAFEESVGSRLQKFGGS 198 (206)
Q Consensus 161 dv~~tVRLViv~~~l~~~~vrdAFeeSL~~RLkk~gg~ 198 (206)
|++|++||++++ ++++.+|++||+|++++|+++.|..
T Consensus 88 ~~~k~irl~~i~-~v~g~~~~~a~~e~~~~~~~~~g~~ 124 (222)
T 1eyq_A 88 PFEKLIRGSKIR-ELSGPEYSRKVMENCVAHLKSVGTY 124 (222)
T ss_dssp SSCEEEEEEESS-CEEHHHHHHHHHHHHHHHHHHTTCC
T ss_pred CCceEEEEEEEe-CCCHHHHHHHHHHHHHHHHhccCcc
Confidence 999999999998 5999999999999999999988654
No 6
>3zqk_A VON willebrand factor; blood clotting, adamts-13, force sensor, VON willebrand DISE domain, haemostasis; HET: NAG; 1.70A {Homo sapiens} PDB: 3ppv_A 3ppx_A 3ppw_A 3ppy_A 3gxb_A*
Probab=33.33 E-value=26 Score=27.14 Aligned_cols=19 Identities=26% Similarity=0.529 Sum_probs=14.1
Q ss_pred eeeeEEEEEE--EechHHHHH
Q 028614 116 KNIDVYAFGV--YADHDDVKK 134 (206)
Q Consensus 116 K~IKVYA~G~--YvD~~~lk~ 134 (206)
++|.||++|+ .+|.+.+++
T Consensus 146 ~~v~v~~iGiG~~~~~~~L~~ 166 (199)
T 3zqk_A 146 GDIQVVPIGVGPNANVQELER 166 (199)
T ss_dssp TTEEEEEEEESTTCCHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHH
Confidence 4789999999 567665554
No 7
>2pq4_B Periplasmic nitrate reductase precursor; NAPD/NAPA1-35, mixed beta-alpha sandwich structure, protein- peptide complex, alpha-helix; NMR {Escherichia coli}
Probab=18.87 E-value=68 Score=19.76 Aligned_cols=15 Identities=47% Similarity=0.412 Sum_probs=10.1
Q ss_pred CCCchhHHHHHHHHH
Q 028614 19 TATRSFSVAVTAAAA 33 (206)
Q Consensus 19 ~~~~~~~~~~~~~~~ 33 (206)
.++|.|-...+++++
T Consensus 3 lsRR~FLK~~aaa~A 17 (35)
T 2pq4_B 3 LSRRSFMKANAVAAA 17 (35)
T ss_dssp CCSHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHH
Confidence 468899886655444
No 8
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=18.37 E-value=46 Score=25.06 Aligned_cols=12 Identities=42% Similarity=0.468 Sum_probs=10.3
Q ss_pred ceEEEEEEeecc
Q 028614 163 CMTVRLQIIYNK 174 (206)
Q Consensus 163 ~~tVRLViv~~~ 174 (206)
|+|+||||+|.+
T Consensus 8 E~TvRLvVNy~~ 19 (91)
T 2daj_A 8 EKTVRVVINFKK 19 (91)
T ss_dssp CSCEEEEEEETT
T ss_pred ccEEEEEEeecC
Confidence 789999999953
No 9
>1q0p_A Complement factor B; VON willebrand factor, MAC-1, I domain, A domain, hydrolase; 1.80A {Homo sapiens} SCOP: c.62.1.1
Probab=17.97 E-value=58 Score=24.82 Aligned_cols=18 Identities=33% Similarity=0.754 Sum_probs=12.8
Q ss_pred eeeEEEEEE--EechHHHHH
Q 028614 117 NIDVYAFGV--YADHDDVKK 134 (206)
Q Consensus 117 ~IKVYA~G~--YvD~~~lk~ 134 (206)
+|+||+||+ .+|.+.+++
T Consensus 169 ~i~i~~igvG~~~~~~~L~~ 188 (223)
T 1q0p_A 169 YLDVYVFGVGPLVNQVNINA 188 (223)
T ss_dssp GEEEEEEECSSCCCHHHHHH
T ss_pred CcEEEEEEecCcCCHHHHHH
Confidence 678999999 456655544
No 10
>3jyw_F 60S ribosomal protein L7(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_F
Probab=17.43 E-value=72 Score=26.52 Aligned_cols=14 Identities=7% Similarity=-0.085 Sum_probs=7.1
Q ss_pred ceEEEEEEeecccc
Q 028614 163 CMTVRLQIIYNKLS 176 (206)
Q Consensus 163 ~~tVRLViv~~~l~ 176 (206)
-..+||-+.+++.+
T Consensus 171 l~pF~L~~P~~G~~ 184 (213)
T 3jyw_F 171 LWPFKLSNPSGGWG 184 (213)
T ss_dssp CSSBCCCCCTTCCS
T ss_pred CCCEECCCCCCCcc
Confidence 33456666655433
Done!