BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028615
(206 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1R08|1 Chain 1, Structural Analysis Of Antiviral Agents That Interact With
The Capsid Of Human Rhinoviruses
pdb|1R09|1 Chain 1, Human Rhinovirus 14 Complexed With Antiviral Compound R
61837
pdb|2R04|1 Chain 1, Structural Analysis Of Antiviral Agents That Interact With
The Capsid Of Human Rhinoviruses
pdb|2R06|1 Chain 1, Structural Analysis Of Antiviral Agents That Interact With
The Capsid Of Human Rhinoviruses
pdb|2R07|1 Chain 1, Structural Analysis Of Antiviral Agents That Interact With
The Capsid Of Human Rhinoviruses
pdb|2RM2|1 Chain 1, Structural Analysis Of Antiviral Agents That Interact With
The Capsid Of Human Rhinoviruses
pdb|2RR1|1 Chain 1, Structural Analysis Of Antiviral Agents That Interact With
The Capsid Of Human Rhinoviruses
pdb|2RS1|1 Chain 1, Structural Analysis Of Antiviral Agents That Interact With
The Capsid Of Human Rhinoviruses
pdb|2RS3|1 Chain 1, Structural Analysis Of Antiviral Agents That Interact With
The Capsid Of Human Rhinoviruses
pdb|2RS5|1 Chain 1, Structural Analysis Of Antiviral Agents That Interact With
The Capsid Of Human Rhinoviruses
pdb|4RHV|1 Chain 1, The Use Of Molecular-Replacement Phases For The Refinement
Of The Human Rhinovirus 14 Structure
pdb|1HRI|1 Chain 1, Structure Determination Of Antiviral Compound Sch 38057
Complexed With Human Rhinovirus 14
pdb|2HWB|1 Chain 1, A Comparison Of The Anti-Rhinoviral Drug Binding Pocket In
Hrv14 And Hrv1a
pdb|2HWC|1 Chain 1, A Comparison Of The Anti-Rhinoviral Drug Binding Pocket In
Hrv14 And Hrv1a
pdb|1HRV|1 Chain 1, Hrv14SDZ 35-682 Complex
pdb|1VRH|1 Chain 1, Hrv14/sdz 880-061 Complex
pdb|1RVF|1 Chain 1, Fab Complexed With Intact Human Rhinovirus
pdb|1D3I|1 Chain 1, Cryo-Em Structure Of Human Rhinovirus 14 (Hrv14) Complexed
With A Two-Domain Fragment Of Its Cellular Receptor,
Intercellular Adhesion Molecule-1 (D1d2-Icam-1).
Implications For Virus-Receptor Interactions. Alpha
Carbons Only
pdb|1K5M|A Chain A, Crystal Structure Of A Human Rhinovirus Type 14:human
Immunodeficiency Virus Type 1 V3 Loop Chimeric Virus Mn-
Iii-2
pdb|1NA1|A Chain A, The Structure Of Hrv14 When Complexed With Pleconaril
pdb|1NCQ|A Chain A, The Structure Of Hrv14 When Complexed With Pleconaril, An
Antiviral Compound
Length = 289
Score = 33.5 bits (75), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 52 TSFLIGLCGLSCGFSCFTDSYKGSDGITHYGIATLKGL 89
+ F + GL+ ++CF D Y D T YGI L +
Sbjct: 184 SRFSVPYVGLASAYNCFYDGYSHDDAETQYGITVLNHM 221
>pdb|1RUD|1 Chain 1, Rhinovirus 14 Mutant N1105s Complexed With Antiviral
Compound Win 52084
pdb|1RUC|1 Chain 1, Rhinovirus 14 Mutant N1105s Complexed With Antiviral
Compound Win 52035
Length = 289
Score = 33.5 bits (75), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 52 TSFLIGLCGLSCGFSCFTDSYKGSDGITHYGIATLKGL 89
+ F + GL+ ++CF D Y D T YGI L +
Sbjct: 184 SRFSVPYVGLASAYNCFYDGYSHDDAETQYGITVLNHM 221
>pdb|1RUH|1 Chain 1, Rhinovirus 14 Mutant N1219s Complexed With Antiviral
Compound Win 52084
pdb|1RUG|1 Chain 1, Rhinovirus 14 Mutant N1219s Complexed With Antiviral
Compound Win 52035
Length = 289
Score = 33.1 bits (74), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 52 TSFLIGLCGLSCGFSCFTDSYKGSDGITHYGIATLKGL 89
+ F + GL+ ++CF D Y D T YGI L +
Sbjct: 184 SRFSVPYVGLASAYNCFYDGYSHDDAETQYGITVLSHM 221
>pdb|1RUJ|1 Chain 1, Rhinovirus 14 Mutant With Ser 1 223 Replaced By Gly
(S1223g)
pdb|1RUI|1 Chain 1, Rhinovirus 14 Mutant S1223g Complexed With Antiviral
Compound Win 52084
Length = 289
Score = 33.1 bits (74), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 52 TSFLIGLCGLSCGFSCFTDSYKGSDGITHYGIATLKGL 89
+ F + GL+ ++CF D Y D T YGI L +
Sbjct: 184 SRFSVPYVGLASAYNCFYDGYSHDDAETQYGITVLNHM 221
>pdb|1RUF|1 Chain 1, Rhinovirus 14 (Hrv14) (Mutant With Asn 1 219 Replaced By
Ala (N219a In Chain 1)
pdb|1RUE|1 Chain 1, Rhinovirus 14 Site Directed Mutant N1219a Complexed With
Antiviral Compound Win 52035
Length = 289
Score = 33.1 bits (74), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 52 TSFLIGLCGLSCGFSCFTDSYKGSDGITHYGIATLKGL 89
+ F + GL+ ++CF D Y D T YGI L +
Sbjct: 184 SRFSVPYVGLASAYNCFYDGYSHDDAETQYGITVLAHM 221
>pdb|2RMU|1 Chain 1, Three-Dimensional Structures Of Drug-Resistant Mutants Of
Human Rhinovirus 14
Length = 289
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 52 TSFLIGLCGLSCGFSCFTDSYKGSDGITHYGIATLKGL 89
+ F + GL+ ++CF D Y D T YGI L +
Sbjct: 184 SRFSLPYVGLASAYNCFYDGYSHDDAETQYGITVLNHM 221
>pdb|1RHI|1 Chain 1, Human Rhinovirus 3 Coat Protein
Length = 288
Score = 31.2 bits (69), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 52 TSFLIGLCGLSCGFSCFTDSYKGSDGITHYGIATLKGL 89
+ F + G++ ++CF D Y D T YGI L +
Sbjct: 184 SRFSVPFVGIASAYNCFYDGYSHDDPDTPYGITVLNHM 221
>pdb|1RMU|1 Chain 1, Three-Dimensional Structures Of Drug-Resistant Mutants Of
Human Rhinovirus 14
Length = 289
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/38 (31%), Positives = 18/38 (47%)
Query: 52 TSFLIGLCGLSCGFSCFTDSYKGSDGITHYGIATLKGL 89
+ F + GL+ ++ F D Y D T YGI L +
Sbjct: 184 SRFSVPYVGLASAYNYFYDGYSHDDAETQYGITVLNHM 221
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.138 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,983,167
Number of Sequences: 62578
Number of extensions: 168237
Number of successful extensions: 447
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 439
Number of HSP's gapped (non-prelim): 8
length of query: 206
length of database: 14,973,337
effective HSP length: 94
effective length of query: 112
effective length of database: 9,091,005
effective search space: 1018192560
effective search space used: 1018192560
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 49 (23.5 bits)