BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028615
(206 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6BSB9|VATL2_DEBHA V-type proton ATPase 16 kDa proteolipid subunit 2 OS=Debaryomyces
hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC
0083 / IGC 2968) GN=VMA11 PE=3 SV=1
Length = 163
Score = 35.0 bits (79), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 14/93 (15%)
Query: 3 AKDNSKTGKTLSGLG---------NLLRLLPTGTVFVYQFLNPVLTNNGKCSTVNKYL-T 52
A +K+G +SG+G +L+ ++ +G + VY + VL G T N L
Sbjct: 34 AIGTAKSGIGISGIGTFKPELIMKSLIPVVMSGILSVYGLVVSVLIAGGLSPTENYSLFN 93
Query: 53 SFLIGLCGLSCGFSCFTDSYK----GSDGITHY 81
F+ CGLS GF+C Y G +G+ +
Sbjct: 94 GFMHLACGLSVGFACLASGYSIGIVGDEGVRQF 126
>sp|P03303|POLG_HRV14 Genome polyprotein OS=Human rhinovirus 14 PE=1 SV=3
Length = 2179
Score = 32.3 bits (72), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 52 TSFLIGLCGLSCGFSCFTDSYKGSDGITHYGIATLKGL 89
+ F + GL+ ++CF D Y D T YGI L +
Sbjct: 751 SRFSVPYVGLASAYNCFYDGYSHDDAETQYGITVLNHM 788
>sp|A2VE21|COPG2_BOVIN Coatomer subunit gamma-2 OS=Bos taurus GN=COPG2 PE=2 SV=1
Length = 871
Score = 31.2 bits (69), Expect = 5.0, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 31/61 (50%)
Query: 83 IATLKGLWPSSRSDSASVDLSSYKIRVADFAHAFFSIIVFAVVSLLDGNTVQCFYPSFES 142
I T G+ P RSD + +S+ + +A + ++V + ++L DG T+Q S E
Sbjct: 801 IITFLGMQPCERSDKVPENKNSHSLYLAGVYRGGYDLLVRSRLALADGVTMQVTVRSKEG 860
Query: 143 T 143
T
Sbjct: 861 T 861
>sp|Q9UBF2|COPG2_HUMAN Coatomer subunit gamma-2 OS=Homo sapiens GN=COPG2 PE=1 SV=1
Length = 871
Score = 31.2 bits (69), Expect = 5.3, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 31/61 (50%)
Query: 83 IATLKGLWPSSRSDSASVDLSSYKIRVADFAHAFFSIIVFAVVSLLDGNTVQCFYPSFES 142
I T G+ P RSD + +S+ + +A + ++V + ++L DG T+Q S E
Sbjct: 801 IITFLGMQPCERSDKVPENKNSHSLYLAGIFRGGYDLLVRSRLALADGVTMQVTVRSKER 860
Query: 143 T 143
T
Sbjct: 861 T 861
>sp|Q9QXK3|COPG2_MOUSE Coatomer subunit gamma-2 OS=Mus musculus GN=Copg2 PE=2 SV=1
Length = 871
Score = 31.2 bits (69), Expect = 5.8, Method: Composition-based stats.
Identities = 18/61 (29%), Positives = 31/61 (50%)
Query: 83 IATLKGLWPSSRSDSASVDLSSYKIRVADFAHAFFSIIVFAVVSLLDGNTVQCFYPSFES 142
I T G+ P RSD + +S+ + +A + ++V + ++L DG T+Q S E
Sbjct: 801 IITFLGMQPCERSDKVPENKNSHSLYLAGVYRGGYDLLVRSRLALADGVTMQVTVRSKER 860
Query: 143 T 143
T
Sbjct: 861 T 861
>sp|Q6CT28|VATL2_KLULA V-type proton ATPase 16 kDa proteolipid subunit 2 OS=Kluyveromyces
lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC
1267 / NRRL Y-1140 / WM37) GN=VMA11 PE=3 SV=1
Length = 165
Score = 30.8 bits (68), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 43/93 (46%), Gaps = 14/93 (15%)
Query: 3 AKDNSKTGKTLSGLG---------NLLRLLPTGTVFVYQFLNPVLTNNGKCSTVNKYLTS 53
A +K+G +SG+G +L+ ++ +G + VY + VL G T + L +
Sbjct: 35 AIGTAKSGIGISGIGTFKPELIMKSLIPVVMSGILAVYGLVVAVLIAGGLSPTEDYTLFN 94
Query: 54 FLIGL-CGLSCGFSCFTDSYK----GSDGITHY 81
+ L CGL GF+C + Y G G+ Y
Sbjct: 95 GFMHLSCGLCVGFACLSSGYAIGIVGDVGVRKY 127
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.136 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,043,991
Number of Sequences: 539616
Number of extensions: 2847459
Number of successful extensions: 5184
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 5180
Number of HSP's gapped (non-prelim): 7
length of query: 206
length of database: 191,569,459
effective HSP length: 112
effective length of query: 94
effective length of database: 131,132,467
effective search space: 12326451898
effective search space used: 12326451898
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)