Query 028615
Match_columns 206
No_of_seqs 105 out of 121
Neff 3.6
Searched_HMMs 46136
Date Fri Mar 29 14:17:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028615.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028615hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05078 DUF679: Protein of un 100.0 1.3E-85 2.8E-90 549.6 14.4 163 13-175 1-170 (170)
2 PF13127 DUF3955: Protein of u 63.6 6.6 0.00014 28.4 2.4 33 48-80 2-35 (63)
3 PF13511 DUF4124: Domain of un 40.7 14 0.00031 25.0 1.0 14 73-86 19-32 (60)
4 PF10894 DUF2689: Protein of u 39.6 14 0.00031 27.1 0.8 9 110-118 21-29 (61)
5 PF03770 IPK: Inositol polypho 34.7 15 0.00033 30.9 0.4 77 31-117 84-175 (197)
6 PRK13724 conjugal transfer pro 34.2 19 0.00042 26.6 0.8 9 110-118 21-29 (65)
7 PF15601 Imm42: Immunity prote 31.2 29 0.00062 28.8 1.5 23 101-123 6-28 (134)
8 cd05503 Bromo_BAZ2A_B_like Bro 29.7 17 0.00037 27.4 -0.1 17 185-201 68-84 (97)
9 KOG4833 Uncharacterized conser 29.0 16 0.00035 36.0 -0.4 45 108-161 499-546 (573)
10 PLN02667 inositol polyphosphat 27.5 32 0.0007 31.4 1.3 31 86-116 217-249 (286)
11 KOG4478 Uncharacterized membra 23.0 24 0.00052 31.6 -0.4 55 75-162 59-117 (217)
12 PF11395 DUF2873: Protein of u 22.9 76 0.0017 21.7 2.1 23 106-128 3-25 (43)
13 cd05508 Bromo_RACK7 Bromodomai 20.9 31 0.00068 26.5 -0.1 16 186-201 71-86 (99)
14 cd05509 Bromo_gcn5_like Bromod 20.8 27 0.00059 26.1 -0.5 16 185-200 69-84 (101)
15 PF15623 CT47: Cancer/testis g 20.6 43 0.00094 31.1 0.7 19 102-120 113-131 (279)
No 1
>PF05078 DUF679: Protein of unknown function (DUF679); InterPro: IPR007770 This family contains uncharacterised plant proteins of unknown function.
Probab=100.00 E-value=1.3e-85 Score=549.56 Aligned_cols=163 Identities=51% Similarity=0.939 Sum_probs=157.5
Q ss_pred hhhHhhhhhcCchhhHHHHHhhccccccCCcccchhhHHHHHHHHHhhhhhcccccccceeCCCCcEEEEEeecCccccc
Q 028615 13 LSGLGNLLRLLPTGTVFVYQFLNPVLTNNGKCSTVNKYLTSFLIGLCGLSCGFSCFTDSYKGSDGITHYGIATLKGLWPS 92 (206)
Q Consensus 13 lssta~La~LLPTGTvLaFQ~LsP~~TN~G~C~~~nr~Lt~~Ll~lca~sCff~sFTDS~~~~dGkvyYG~aT~~Gl~~f 92 (206)
|+++|||+|||||||||+||+|+|++||||+|+++|||||++||++||+||||+||||||+|+|||+|||+||+||||+|
T Consensus 1 ls~ta~La~LLPTGTvlaFq~L~P~~Tn~G~C~~~nr~lt~~Ll~lca~sC~f~sFTDS~~~~dGkvyYG~aT~~Gl~~f 80 (170)
T PF05078_consen 1 LSSTANLAKLLPTGTVLAFQILSPSFTNNGECDTANRWLTAALLALCAASCFFFSFTDSFRGSDGKVYYGFATPRGLWVF 80 (170)
T ss_pred CccHHHHHHhCcchHHHHHHHhhhhcccCCccCcchHHHHHHHHHHHHHHHHHeeecceeECCCCCEEEEEEEcccceec
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred C------CCCC-CCCCcccceeeeehhhhHHHHHHHHHHhHhccCCcceeecCCCchhHHHHHHhhchhHHHhhheeeeE
Q 028615 93 S------RSDS-ASVDLSSYKIRVADFAHAFFSIIVFAVVSLLDGNTVQCFYPSFESTQKALLMVLPPAIGAVSSVIFVL 165 (206)
Q Consensus 93 ~------g~~~-~~~~~s~yrLr~~DfVHA~lS~~VF~avAl~D~nvv~CffP~~~~~~~ell~~lPl~vG~~~S~vF~i 165 (206)
| |+++ .+++++||||||+|||||++|++||++||++|+|||+||||++++|+||+|+++|++||++||+|||+
T Consensus 81 ~~~~~~~g~~~~~~~~~~~yrlr~~DfvHA~lS~~VF~aval~d~~v~~Cf~P~~~~~~~~~l~~lP~~vG~~~S~vF~~ 160 (170)
T PF05078_consen 81 NYPGPEEGGGELKPRDLSKYRLRFIDFVHAFLSVVVFLAVALSDQNVVSCFFPSPSSETKEVLMNLPLGVGVLCSMVFMI 160 (170)
T ss_pred CCCCccccccCCCccccccceEehhhhhHHHHHHHHHHHhheeCCCcceecCCCCchhHHHHHHHhHHHHHHhHeeEEEE
Confidence 9 3333 34679999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCcccCC
Q 028615 166 FPNKRHGIGY 175 (206)
Q Consensus 166 FPt~RhGIGy 175 (206)
|||+||||||
T Consensus 161 FPt~R~GIGy 170 (170)
T PF05078_consen 161 FPTTRHGIGY 170 (170)
T ss_pred CCCCCCCCCC
Confidence 9999999998
No 2
>PF13127 DUF3955: Protein of unknown function (DUF3955)
Probab=63.64 E-value=6.6 Score=28.44 Aligned_cols=33 Identities=36% Similarity=0.690 Sum_probs=27.1
Q ss_pred hhHHHHHHHHHhhhhhcccc-cccceeCCCCcEE
Q 028615 48 NKYLTSFLIGLCGLSCGFSC-FTDSYKGSDGITH 80 (206)
Q Consensus 48 nr~Lt~~Ll~lca~sCff~s-FTDS~~~~dGkvy 80 (206)
+++..+.++.+.++.|++.. ...||+|+||-++
T Consensus 2 ~~~~l~~~~~llg~~~l~i~~~~~syVd~~G~L~ 35 (63)
T PF13127_consen 2 KKYILSLILLLLGVVCLFIFNIIGSYVDEDGVLH 35 (63)
T ss_pred cchHHHHHHHHHHHHHHHHHhcccceECCCCeEe
Confidence 46778888889999998764 5669999999876
No 3
>PF13511 DUF4124: Domain of unknown function (DUF4124)
Probab=40.74 E-value=14 Score=25.00 Aligned_cols=14 Identities=21% Similarity=0.461 Sum_probs=10.5
Q ss_pred eCCCCcEEEEEeec
Q 028615 73 KGSDGITHYGIATL 86 (206)
Q Consensus 73 ~~~dGkvyYG~aT~ 86 (206)
+|++|+++|.=.=+
T Consensus 19 ~D~~G~v~ysd~P~ 32 (60)
T PF13511_consen 19 VDENGVVHYSDTPP 32 (60)
T ss_pred ECCCCCEEECccCC
Confidence 48899999976533
No 4
>PF10894 DUF2689: Protein of unknown function (DUF2689); InterPro: IPR024396 Members of this protein family are annotated as conjugal transfer protein TrbD; however, currently no function is known.
Probab=39.64 E-value=14 Score=27.07 Aligned_cols=9 Identities=56% Similarity=0.866 Sum_probs=7.9
Q ss_pred ehhhhHHHH
Q 028615 110 ADFAHAFFS 118 (206)
Q Consensus 110 ~DfVHA~lS 118 (206)
-||+||++|
T Consensus 21 DDFmhaVlS 29 (61)
T PF10894_consen 21 DDFMHAVLS 29 (61)
T ss_pred HHHHHHHHh
Confidence 399999998
No 5
>PF03770 IPK: Inositol polyphosphate kinase ; InterPro: IPR005522 ArgRIII has been demonstrated to be an inositol polyphosphate kinase [] which catalyses the reaction ATP + 1D-myo-inositol 1,4,5-trisphosphate = ADP + 1D-myo-inositol 1,3,4,5-tetrakisphosphate .; GO: 0008440 inositol trisphosphate 3-kinase activity; PDB: 2IF8_B 2IEW_B 1W2C_A 1W2F_A 1W2D_A 2A98_A 2AQX_A 1TZD_A.
Probab=34.73 E-value=15 Score=30.93 Aligned_cols=77 Identities=18% Similarity=0.160 Sum_probs=35.7
Q ss_pred HHhhccccccCCcccchhhHHHHHHHHHhhhhhcccccccceeCCCCcEEEEEeecCcccccCCCC--------------
Q 028615 31 YQFLNPVLTNNGKCSTVNKYLTSFLIGLCGLSCGFSCFTDSYKGSDGITHYGIATLKGLWPSSRSD-------------- 96 (206)
Q Consensus 31 FQ~LsP~~TN~G~C~~~nr~Lt~~Ll~lca~sCff~sFTDS~~~~dGkvyYG~aT~~Gl~~f~g~~-------------- 96 (206)
.+.|...|.+++.-....+.+..++--+-.+--+|-.-+. |=+....=|.+++|..
T Consensus 84 ~~~l~~Ff~~~~~~~~~~~~~~~~l~~L~~L~~~~~~~~~----------~~f~sSSLLivYd~~~~~~~~~~~~~~~~~ 153 (197)
T PF03770_consen 84 RDALKKFFNNGSSPRRRRELLRSILKQLEQLREWFESQRS----------FRFYSSSLLIVYDGDPSRLENESSSSSTST 153 (197)
T ss_dssp HHHHHHHHT-TT-HHTHHHHHHHHHHHHHHHHHHHCC-CC----------EEEESEEEEEEEETTHHHHHHC--------
T ss_pred HHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHhccc----------CeeecceEEEEEcCCccccccccccccccc
Confidence 4455555555543333344455555555555555444333 2222222266777651
Q ss_pred -CCCCCcccceeeeehhhhHHH
Q 028615 97 -SASVDLSSYKIRVADFAHAFF 117 (206)
Q Consensus 97 -~~~~~~s~yrLr~~DfVHA~l 117 (206)
........+++|++||.|+..
T Consensus 154 ~~~~~~~~~~~vklIDFAH~~~ 175 (197)
T PF03770_consen 154 SDSDDPPNKVDVKLIDFAHVFP 175 (197)
T ss_dssp -------S-EEEEEE--TTEEE
T ss_pred ccccCCCCcccEEEEECCCccc
Confidence 112346799999999999876
No 6
>PRK13724 conjugal transfer protein TrbD; Provisional
Probab=34.22 E-value=19 Score=26.62 Aligned_cols=9 Identities=56% Similarity=0.866 Sum_probs=7.9
Q ss_pred ehhhhHHHH
Q 028615 110 ADFAHAFFS 118 (206)
Q Consensus 110 ~DfVHA~lS 118 (206)
-||+||++|
T Consensus 21 DDF~h~VlS 29 (65)
T PRK13724 21 DDFMHAVLS 29 (65)
T ss_pred HHHHHHHHh
Confidence 399999987
No 7
>PF15601 Imm42: Immunity protein 42
Probab=31.17 E-value=29 Score=28.77 Aligned_cols=23 Identities=43% Similarity=0.756 Sum_probs=19.2
Q ss_pred CcccceeeeehhhhHHHHHHHHH
Q 028615 101 DLSSYKIRVADFAHAFFSIIVFA 123 (206)
Q Consensus 101 ~~s~yrLr~~DfVHA~lS~~VF~ 123 (206)
+..-|.+.-.||+|+|+|.+..-
T Consensus 6 ~~~~~eiG~~dfl~sFFsti~~~ 28 (134)
T PF15601_consen 6 GFSWYEIGPPDFLHSFFSTISYR 28 (134)
T ss_pred CceEEEeCCHHHHHHHHHHHHHH
Confidence 45678999999999999998643
No 8
>cd05503 Bromo_BAZ2A_B_like Bromodomain, BAZ2A/BAZ2B_like subfamily. Bromo adjacent to zinc finger 2A (BAZ2A) and 2B (BAZ2B) were identified as a novel human bromodomain gene by cDNA library screening. BAZ2A is also known as Tip5 (Transcription termination factor I-interacting protein 5) and hWALp3. The proteins may play roles in transcriptional regulation. Human Tip5 is part of a complex termed NoRC (nucleolar remodeling complex), which induces nucleosome sliding and may play a role in the regulation of the rDNA locus. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=29.73 E-value=17 Score=27.36 Aligned_cols=17 Identities=29% Similarity=0.495 Sum_probs=14.0
Q ss_pred eeecccccCCcchhhhh
Q 028615 185 RFTNARMFNGEDAALCL 201 (206)
Q Consensus 185 ~~~n~~~~~~~~~~~~~ 201 (206)
-++||++|||+|...+.
T Consensus 68 i~~Na~~yN~~~s~i~~ 84 (97)
T cd05503 68 VFDNCETFNEDDSEVGR 84 (97)
T ss_pred HHHHHHHHCCCCCHHHH
Confidence 47899999999987653
No 9
>KOG4833 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.98 E-value=16 Score=35.96 Aligned_cols=45 Identities=24% Similarity=0.442 Sum_probs=28.1
Q ss_pred eeehhhhHHHHHHHHHHhHhccCCcceeecCCCchh---HHHHHHhhchhHHHhhhe
Q 028615 108 RVADFAHAFFSIIVFAVVSLLDGNTVQCFYPSFEST---QKALLMVLPPAIGAVSSV 161 (206)
Q Consensus 108 r~~DfVHA~lS~~VF~avAl~D~nvv~CffP~~~~~---~~ell~~lPl~vG~~~S~ 161 (206)
+.+||+||+ .++|-|+..||||..+.- .+...+.+-+-|-++|+-
T Consensus 499 piidfnhaV---------cfsdLnIadcflpieSringklerdtrVisppvDiIanc 546 (573)
T KOG4833|consen 499 PIIDFNHAV---------CFSDLNIADCFLPIESRINGKLERDTRVISPPVDIIANC 546 (573)
T ss_pred HHHHHHHHH---------HHhcccHhHheehhHhhhhhhhhccceeecCchHHHHhh
Confidence 357888876 458999999999987742 222233333334555543
No 10
>PLN02667 inositol polyphosphate multikinase
Probab=27.47 E-value=32 Score=31.36 Aligned_cols=31 Identities=19% Similarity=0.204 Sum_probs=21.8
Q ss_pred cCcccccCCCCCC--CCCcccceeeeehhhhHH
Q 028615 86 LKGLWPSSRSDSA--SVDLSSYKIRVADFAHAF 116 (206)
Q Consensus 86 ~~Gl~~f~g~~~~--~~~~s~yrLr~~DfVHA~ 116 (206)
..=|.++||.... ..+.++.++|++||-|++
T Consensus 217 SSLLivYDg~~~~~~~~~~~~v~VkmIDFAH~~ 249 (286)
T PLN02667 217 ASILIVYEGEAILKGNPEDSRVEVKLVDFAHVL 249 (286)
T ss_pred eEEEEEEcCCccccccCCCCcceEEEEeCcccc
Confidence 3446788875432 123578999999999985
No 11
>KOG4478 consensus Uncharacterized membrane protein [Function unknown]
Probab=22.99 E-value=24 Score=31.58 Aligned_cols=55 Identities=25% Similarity=0.240 Sum_probs=34.6
Q ss_pred CCC--cEEEEEeec--CcccccCCCCCCCCCcccceeeeehhhhHHHHHHHHHHhHhccCCcceeecCCCchhHHHHHHh
Q 028615 75 SDG--ITHYGIATL--KGLWPSSRSDSASVDLSSYKIRVADFAHAFFSIIVFAVVSLLDGNTVQCFYPSFESTQKALLMV 150 (206)
Q Consensus 75 ~dG--kvyYG~aT~--~Gl~~f~g~~~~~~~~s~yrLr~~DfVHA~lS~~VF~avAl~D~nvv~CffP~~~~~~~ell~~ 150 (206)
.|| |+|||.+-+ ||...++-+... .+ ++ +-|.-.....|+...
T Consensus 59 ddg~Q~~yyg~vA~~vkgVK~lSlSTsl------------------~g-v~--------------~~Pvi~~q~~~i~~~ 105 (217)
T KOG4478|consen 59 DDGSQKTYYGVVAMGVKGVKILSLSTSL------------------AG-VV--------------MVPVLSSQLWEIAAE 105 (217)
T ss_pred CCcccccccchhhhhcceeEEEEehhhh------------------hh-hh--------------hhhhHhhhcchhhcc
Confidence 455 799998865 777777744321 11 11 234444555667777
Q ss_pred hchhHHHhhhee
Q 028615 151 LPPAIGAVSSVI 162 (206)
Q Consensus 151 lPl~vG~~~S~v 162 (206)
.|++++++|++.
T Consensus 106 ~pim~~f~~~~g 117 (217)
T KOG4478|consen 106 RPIMMMFAIVAG 117 (217)
T ss_pred cchhhhhHhhhh
Confidence 888888888763
No 12
>PF11395 DUF2873: Protein of unknown function (DUF2873); InterPro: IPR021532 This entry is represented by the human SARS coronavirus, Orf7b; it is a family of uncharacterised viral proteins.
Probab=22.94 E-value=76 Score=21.71 Aligned_cols=23 Identities=30% Similarity=0.651 Sum_probs=19.9
Q ss_pred eeeeehhhhHHHHHHHHHHhHhc
Q 028615 106 KIRVADFAHAFFSIIVFAVVSLL 128 (206)
Q Consensus 106 rLr~~DfVHA~lS~~VF~avAl~ 128 (206)
.|...||--.++|.+.|+++.+.
T Consensus 3 ~ltl~dfylc~l~~llflv~iml 25 (43)
T PF11395_consen 3 HLTLFDFYLCFLSFLLFLVIIML 25 (43)
T ss_pred ceehhHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999998764
No 13
>cd05508 Bromo_RACK7 Bromodomain, RACK7_like subfamily. RACK7 (also called human protein kinase C-binding protein) was identified as a potential tumor suppressor genes, it shares domain architecture with BS69/ZMYND11; both have been implicated in the regulation of cellular proliferation. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=20.89 E-value=31 Score=26.47 Aligned_cols=16 Identities=38% Similarity=0.586 Sum_probs=12.9
Q ss_pred eecccccCCcchhhhh
Q 028615 186 FTNARMFNGEDAALCL 201 (206)
Q Consensus 186 ~~n~~~~~~~~~~~~~ 201 (206)
++||++|||+|.....
T Consensus 71 ~~Na~~YN~~~s~i~~ 86 (99)
T cd05508 71 LHNAIIYNGGDHKLTQ 86 (99)
T ss_pred HHHHHHHCCCCCHHHH
Confidence 6899999999876543
No 14
>cd05509 Bromo_gcn5_like Bromodomain; Gcn5_like subfamily. Gcn5p is a histone acetyltransferase (HAT) which mediates acetylation of histones at lysine residues; such acetylation is generally correlated with the activation of transcription. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=20.77 E-value=27 Score=26.13 Aligned_cols=16 Identities=38% Similarity=0.754 Sum_probs=13.1
Q ss_pred eeecccccCCcchhhh
Q 028615 185 RFTNARMFNGEDAALC 200 (206)
Q Consensus 185 ~~~n~~~~~~~~~~~~ 200 (206)
-++||+.|||++....
T Consensus 69 i~~Na~~yN~~~s~~~ 84 (101)
T cd05509 69 IFDNCRLYNGPDTEYY 84 (101)
T ss_pred HHHHHHHHCCCCCHHH
Confidence 4789999999987543
No 15
>PF15623 CT47: Cancer/testis gene family 47
Probab=20.64 E-value=43 Score=31.06 Aligned_cols=19 Identities=16% Similarity=0.539 Sum_probs=16.2
Q ss_pred cccceeeeehhhhHHHHHH
Q 028615 102 LSSYKIRVADFAHAFFSII 120 (206)
Q Consensus 102 ~s~yrLr~~DfVHA~lS~~ 120 (206)
...||+.|+|.||+.|-=+
T Consensus 113 maGfR~~fLDLVhslL~Ri 131 (279)
T PF15623_consen 113 MAGFRFMFLDLVHSLLNRI 131 (279)
T ss_pred cccceeeHHHHHHHHHHHH
Confidence 4569999999999998765
Done!