Query 028615
Match_columns 206
No_of_seqs 105 out of 121
Neff 3.6
Searched_HMMs 29240
Date Mon Mar 25 23:58:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028615.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028615hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4frf_A Inositol polyphosphate 34.5 12 0.00039 32.2 0.9 28 89-116 212-241 (275)
2 1k2d_P MBP peptide, myelin bas 33.1 12 0.0004 22.4 0.5 11 166-176 10-20 (26)
3 2le2_A P56; UDG inhibition, DN 23.9 37 0.0013 23.4 1.8 23 68-92 6-34 (56)
4 1e0l_A Formin binding protein; 22.1 40 0.0014 20.6 1.5 10 72-81 11-20 (37)
5 1wr4_A Ubiquitin-protein ligas 21.7 38 0.0013 19.9 1.4 10 72-81 12-21 (36)
6 1e0m_A Wwprototype; SH3 protot 21.2 43 0.0015 19.8 1.5 10 73-82 12-21 (37)
7 2ysh_A GAS-7, growth-arrest-sp 19.4 49 0.0017 20.1 1.5 11 72-82 15-25 (40)
8 1wr3_A Ubiquitin-protein ligas 18.3 50 0.0017 19.6 1.4 10 73-82 13-22 (36)
9 1ymz_A CC45; artificial protei 18.3 53 0.0018 20.3 1.5 10 73-82 17-26 (43)
10 2ysg_A Syntaxin-binding protei 17.7 52 0.0018 20.3 1.4 10 73-82 16-25 (40)
No 1
>4frf_A Inositol polyphosphate multikinase alpha; ATP grAsp, inositol phosphate kinase, transferase; 2.90A {Arabidopsis thaliana}
Probab=34.46 E-value=12 Score=32.17 Aligned_cols=28 Identities=21% Similarity=0.294 Sum_probs=18.3
Q ss_pred ccccCCCCCCC--CCcccceeeeehhhhHH
Q 028615 89 LWPSSRSDSAS--VDLSSYKIRVADFAHAF 116 (206)
Q Consensus 89 l~~f~g~~~~~--~~~s~yrLr~~DfVHA~ 116 (206)
|.++||..... .+.++.++|.+||.|++
T Consensus 212 L~vYD~~~~~~~~~~~~~~~vrmIDFAh~~ 241 (275)
T 4frf_A 212 LMVYENESILKGNDDDARPQVKLVDFAHVL 241 (275)
T ss_dssp EEEEECCC-------CCCCEEEEECCTTCE
T ss_pred eeEecCcccccccCCCCcccEEEEECCCCC
Confidence 56777654332 24678999999999973
No 2
>1k2d_P MBP peptide, myelin basic protein peptide with 8 residue linke; MHC class II, I-AU, H-2U, autoimmune disease; HET: NDG NAG; 2.20A {Mus musculus}
Probab=33.06 E-value=12 Score=22.36 Aligned_cols=11 Identities=45% Similarity=0.806 Sum_probs=8.8
Q ss_pred ccCCCcccCCC
Q 028615 166 FPNKRHGIGYP 176 (206)
Q Consensus 166 FPt~RhGIGyp 176 (206)
=|+.|||-|--
T Consensus 10 rpsqrhg~gsg 20 (26)
T 1k2d_P 10 RPSQRHGTGSG 20 (26)
T ss_pred CccccccCCCC
Confidence 38999998854
No 3
>2le2_A P56; UDG inhibition, DNA mimicry, hydrolas inhibitor; NMR {Bacillus phage PHI29}
Probab=23.90 E-value=37 Score=23.37 Aligned_cols=23 Identities=48% Similarity=0.661 Sum_probs=16.4
Q ss_pred cccce------eCCCCcEEEEEeecCccccc
Q 028615 68 FTDSY------KGSDGITHYGIATLKGLWPS 92 (206)
Q Consensus 68 FTDS~------~~~dGkvyYG~aT~~Gl~~f 92 (206)
|-||| +|.||+-||-. -+||...
T Consensus 6 f~dsy~~t~ll~dddg~q~~e~--h~glsls 34 (56)
T 2le2_A 6 FVDSYDVTMLLQDDDGKQYYEY--HKGLSLS 34 (56)
T ss_dssp SCSSEEEEEEEECTTSCEEEEE--EEEECHH
T ss_pred cccceeEEEEEEcCCCceeeee--ecCcccc
Confidence 66776 58899999976 3555443
No 4
>1e0l_A Formin binding protein; SH3 domain, WW domain, FBP28, signal transduction; NMR {Mus musculus} SCOP: b.72.1.1 PDB: 2jup_W 2rly_W 2rm0_W 2nnt_A
Probab=22.12 E-value=40 Score=20.57 Aligned_cols=10 Identities=60% Similarity=0.943 Sum_probs=7.5
Q ss_pred eeCCCCcEEE
Q 028615 72 YKGSDGITHY 81 (206)
Q Consensus 72 ~~~~dGkvyY 81 (206)
++++||+.||
T Consensus 11 ~~~~~G~~YY 20 (37)
T 1e0l_A 11 YKTADGKTYY 20 (37)
T ss_dssp EECTTSCEEE
T ss_pred EECCCCCEEE
Confidence 4567899887
No 5
>1wr4_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus} PDB: 2lb2_A*
Probab=21.74 E-value=38 Score=19.91 Aligned_cols=10 Identities=40% Similarity=0.514 Sum_probs=7.6
Q ss_pred eeCCCCcEEE
Q 028615 72 YKGSDGITHY 81 (206)
Q Consensus 72 ~~~~dGkvyY 81 (206)
.++++|++||
T Consensus 12 ~~d~~g~~Yy 21 (36)
T 1wr4_A 12 RKDAKGRTYY 21 (36)
T ss_dssp EECSSSCEEE
T ss_pred EECCCCCEEE
Confidence 3567899988
No 6
>1e0m_A Wwprototype; SH3 prototype, protein design, de novo protein; NMR {} SCOP: k.22.1.1
Probab=21.16 E-value=43 Score=19.83 Aligned_cols=10 Identities=40% Similarity=0.424 Sum_probs=7.5
Q ss_pred eCCCCcEEEE
Q 028615 73 KGSDGITHYG 82 (206)
Q Consensus 73 ~~~dGkvyYG 82 (206)
.+++|++||=
T Consensus 12 ~~~~G~~Yy~ 21 (37)
T 1e0m_A 12 KTHNGKTYYY 21 (37)
T ss_dssp ECSSCCEEEE
T ss_pred ECCCCCEEEE
Confidence 4568999984
No 7
>2ysh_A GAS-7, growth-arrest-specific protein 7; WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1
Probab=19.37 E-value=49 Score=20.09 Aligned_cols=11 Identities=27% Similarity=0.416 Sum_probs=8.1
Q ss_pred eeCCCCcEEEE
Q 028615 72 YKGSDGITHYG 82 (206)
Q Consensus 72 ~~~~dGkvyYG 82 (206)
.++++|++||=
T Consensus 15 ~~d~~Gr~YY~ 25 (40)
T 2ysh_A 15 YLSPQGRRYYV 25 (40)
T ss_dssp EECTTSCEEEE
T ss_pred EECCCCCEEEE
Confidence 34678999983
No 8
>1wr3_A Ubiquitin-protein ligase NEDD4-2; all-beta; NMR {Mus musculus}
Probab=18.33 E-value=50 Score=19.61 Aligned_cols=10 Identities=30% Similarity=0.145 Sum_probs=7.7
Q ss_pred eCCCCcEEEE
Q 028615 73 KGSDGITHYG 82 (206)
Q Consensus 73 ~~~dGkvyYG 82 (206)
.+++|++||-
T Consensus 13 ~d~~G~~Yy~ 22 (36)
T 1wr3_A 13 VDNLGRTYYV 22 (36)
T ss_dssp ECSSSCEEEE
T ss_pred ECCCCCEEEE
Confidence 4578999993
No 9
>1ymz_A CC45; artificial protein, computational design, unknown function; NMR {Synthetic} SCOP: k.22.1.1
Probab=18.29 E-value=53 Score=20.30 Aligned_cols=10 Identities=20% Similarity=0.228 Sum_probs=7.7
Q ss_pred eCCCCcEEEE
Q 028615 73 KGSDGITHYG 82 (206)
Q Consensus 73 ~~~dGkvyYG 82 (206)
++++|++||=
T Consensus 17 ~~~~Gr~YY~ 26 (43)
T 1ymz_A 17 TDVEGKVYYF 26 (43)
T ss_dssp ECTTSCEEEE
T ss_pred ECCCCCEEEE
Confidence 4578999983
No 10
>2ysg_A Syntaxin-binding protein 4; synip, STXBP4, WW domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.22.1.1
Probab=17.68 E-value=52 Score=20.27 Aligned_cols=10 Identities=30% Similarity=0.391 Sum_probs=7.7
Q ss_pred eCCCCcEEEE
Q 028615 73 KGSDGITHYG 82 (206)
Q Consensus 73 ~~~dGkvyYG 82 (206)
++++|++||=
T Consensus 16 ~~~~Gr~Yy~ 25 (40)
T 2ysg_A 16 YTADGIKYFI 25 (40)
T ss_dssp ECSSSCEEEE
T ss_pred EcCCCCEEEE
Confidence 4578999983
Done!