Query 028615
Match_columns 206
No_of_seqs 105 out of 121
Neff 3.6
Searched_HMMs 13730
Date Mon Mar 25 23:58:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028615.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/028615hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1o6wa1 b.72.1.1 (A:1-29) Spli 54.2 2.8 0.0002 24.2 1.6 10 72-81 7-16 (29)
2 d1ywia1 b.72.1.1 (A:15-42) Hun 52.8 2.3 0.00017 24.3 1.1 10 72-81 6-15 (28)
3 d2rm0w1 b.72.1.1 (W:1-37) Form 46.4 4.3 0.00031 24.3 1.6 10 72-81 11-20 (37)
4 d1o6wa2 b.72.1.1 (A:30-75) Spl 45.8 4.3 0.00031 25.5 1.6 11 72-82 19-29 (46)
5 d2dk1a1 b.72.1.1 (A:7-44) WW d 22.7 10 0.00074 22.7 0.4 10 72-81 6-15 (38)
6 d2jmfa1 b.72.1.1 (A:521-553) U 22.3 18 0.0013 20.8 1.4 11 72-82 10-20 (33)
7 d2ogqa1 d.223.1.2 (A:371-494) 19.4 8 0.00058 28.4 -0.8 19 168-186 48-66 (124)
8 d2axtm1 f.23.35.1 (M:1-36) Pho 17.8 4.3 0.00031 24.6 -2.2 14 155-168 6-19 (36)
9 d1s12a_ d.64.2.1 (A:) Hypothet 17.4 63 0.0046 22.1 3.8 48 109-156 18-75 (94)
10 d1mu2a1 c.55.3.1 (A:430-555) H 14.9 45 0.0033 22.5 2.5 25 66-90 9-34 (126)
No 1
>d1o6wa1 b.72.1.1 (A:1-29) Splicing factor prp40 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=54.22 E-value=2.8 Score=24.15 Aligned_cols=10 Identities=30% Similarity=0.398 Sum_probs=8.5
Q ss_pred eeCCCCcEEE
Q 028615 72 YKGSDGITHY 81 (206)
Q Consensus 72 ~~~~dGkvyY 81 (206)
.+++||+.||
T Consensus 7 ~~~~~G~~YY 16 (29)
T d1o6wa1 7 AKDASGRIYY 16 (29)
T ss_dssp EECTTCCEEE
T ss_pred EECCCCCEEE
Confidence 5689999988
No 2
>d1ywia1 b.72.1.1 (A:15-42) Huntingtin-interacting protein HYPA/FBP11 {Human (Homo sapiens) [TaxId: 9606]}
Probab=52.84 E-value=2.3 Score=24.31 Aligned_cols=10 Identities=50% Similarity=0.627 Sum_probs=8.3
Q ss_pred eeCCCCcEEE
Q 028615 72 YKGSDGITHY 81 (206)
Q Consensus 72 ~~~~dGkvyY 81 (206)
.+++||++||
T Consensus 6 ~~~~~G~~YY 15 (28)
T d1ywia1 6 HKSPDGRTYY 15 (28)
T ss_dssp EEETTTEEEE
T ss_pred EECCCCCEEE
Confidence 4678999988
No 3
>d2rm0w1 b.72.1.1 (W:1-37) Formin binding protein FBP28 domain {Domestic mouse (Mus musculus) [TaxId: 10090]}
Probab=46.45 E-value=4.3 Score=24.26 Aligned_cols=10 Identities=60% Similarity=0.943 Sum_probs=8.4
Q ss_pred eeCCCCcEEE
Q 028615 72 YKGSDGITHY 81 (206)
Q Consensus 72 ~~~~dGkvyY 81 (206)
++++||++||
T Consensus 11 ~~~~~Gr~YY 20 (37)
T d2rm0w1 11 YKTADGKTYY 20 (37)
T ss_dssp EECTTCCEEE
T ss_pred EECCCCCEEE
Confidence 5678999998
No 4
>d1o6wa2 b.72.1.1 (A:30-75) Splicing factor prp40 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=45.83 E-value=4.3 Score=25.48 Aligned_cols=11 Identities=36% Similarity=0.359 Sum_probs=8.8
Q ss_pred eeCCCCcEEEE
Q 028615 72 YKGSDGITHYG 82 (206)
Q Consensus 72 ~~~~dGkvyYG 82 (206)
++++||++||=
T Consensus 19 ~~~~~Gr~YYy 29 (46)
T d1o6wa2 19 AKTADGKVYYY 29 (46)
T ss_dssp EECTTCCEEEE
T ss_pred EECCCCCEEEE
Confidence 56789999983
No 5
>d2dk1a1 b.72.1.1 (A:7-44) WW domain-binding protein 4, WBP4 {Human (Homo sapiens) [TaxId: 9606]}
Probab=22.70 E-value=10 Score=22.72 Aligned_cols=10 Identities=30% Similarity=0.298 Sum_probs=7.4
Q ss_pred eeCCCCcEEE
Q 028615 72 YKGSDGITHY 81 (206)
Q Consensus 72 ~~~~dGkvyY 81 (206)
.+++||++||
T Consensus 6 ~~~~~G~~YY 15 (38)
T d2dk1a1 6 GITSEGYHYY 15 (38)
T ss_dssp CCCSTTCCCE
T ss_pred EECCCCCEEE
Confidence 3567998876
No 6
>d2jmfa1 b.72.1.1 (A:521-553) Ubiquitin ligase NEDD4 WWIII domain {fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=22.31 E-value=18 Score=20.85 Aligned_cols=11 Identities=9% Similarity=0.039 Sum_probs=8.4
Q ss_pred eeCCCCcEEEE
Q 028615 72 YKGSDGITHYG 82 (206)
Q Consensus 72 ~~~~dGkvyYG 82 (206)
..+.+|++||-
T Consensus 10 ~~d~~G~~Yyi 20 (33)
T d2jmfa1 10 RYTAAGERFFV 20 (33)
T ss_dssp EECTTSCEEEE
T ss_pred EECCCCCEEEE
Confidence 35689999983
No 7
>d2ogqa1 d.223.1.2 (A:371-494) Serine/threonine-protein kinase plk C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=19.36 E-value=8 Score=28.38 Aligned_cols=19 Identities=26% Similarity=0.544 Sum_probs=15.8
Q ss_pred CCCcccCCCCCCCCCCcee
Q 028615 168 NKRHGIGYPASSDSSDNRF 186 (206)
Q Consensus 168 t~RhGIGyp~~~~~~~~~~ 186 (206)
+++|||||..+..+....|
T Consensus 48 S~KyGlgY~LSdgtvGV~F 66 (124)
T d2ogqa1 48 SDKYGLGYQLCDNSVGVLF 66 (124)
T ss_dssp TTTTEEEEEETTSCEEEEE
T ss_pred CCCceEEEEEcCCcEEEEE
Confidence 7899999999988776644
No 8
>d2axtm1 f.23.35.1 (M:1-36) Photosystem II reaction center protein M, PsbM {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=17.76 E-value=4.3 Score=24.59 Aligned_cols=14 Identities=36% Similarity=0.947 Sum_probs=12.2
Q ss_pred HHHhhheeeeEccC
Q 028615 155 IGAVSSVIFVLFPN 168 (206)
Q Consensus 155 vG~~~S~vF~iFPt 168 (206)
.|++++.+|++.||
T Consensus 6 Lg~iAt~LFilvPt 19 (36)
T d2axtm1 6 LGLIATALFVLVPS 19 (36)
T ss_dssp THHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 58999999999886
No 9
>d1s12a_ d.64.2.1 (A:) Hypothetical protein TM1457 {Thermotoga maritima [TaxId: 2336]}
Probab=17.41 E-value=63 Score=22.08 Aligned_cols=48 Identities=13% Similarity=0.183 Sum_probs=37.4
Q ss_pred eehhhhHHHHHHHHHHhHhcc----------CCcceeecCCCchhHHHHHHhhchhHH
Q 028615 109 VADFAHAFFSIIVFAVVSLLD----------GNTVQCFYPSFESTQKALLMVLPPAIG 156 (206)
Q Consensus 109 ~~DfVHA~lS~~VF~avAl~D----------~nvv~CffP~~~~~~~ell~~lPl~vG 156 (206)
-.|.|=|..|++++.++--.+ .+-..|-+|..+++.+.+|+++=++.-
T Consensus 18 G~DIVCAaVS~l~~~~vN~l~~~~~~~~~~~~G~l~~~~~~~~~~~q~ll~~m~~gL~ 75 (94)
T d1s12a_ 18 PDKTLCASVSLLTQHVANFLKAEKKAKIKKESGYLKVKFEELENCEVKVLAAMVRSLK 75 (94)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHTTSEEEEEETTEEEEEECSCCHHHHHHHHHHHHHHH
T ss_pred CCceeehhhHHHHHHHHHHHHHHhCCcEEeeCCEEEEEECCCCHHHHHHHHHHHHHHH
Confidence 349999999999999886443 334788899998888888888766543
No 10
>d1mu2a1 c.55.3.1 (A:430-555) HIV RNase H (Domain of reverse transcriptase) {Human immunodeficiency virus type 2 [TaxId: 11709]}
Probab=14.94 E-value=45 Score=22.51 Aligned_cols=25 Identities=24% Similarity=0.205 Sum_probs=17.9
Q ss_pred ccccc-ceeCCCCcEEEEEeecCccc
Q 028615 66 SCFTD-SYKGSDGITHYGIATLKGLW 90 (206)
Q Consensus 66 ~sFTD-S~~~~dGkvyYG~aT~~Gl~ 90 (206)
.-||| |.+...|.-.+|++...|=+
T Consensus 9 t~YTDGS~~~n~~~~~~g~~~~~~~~ 34 (126)
T d1mu2a1 9 TFYTDGSCNRQSKEGKAGYVTDRGKD 34 (126)
T ss_dssp EEEEEEEECTTTCCEEEEEEETTSCE
T ss_pred EEEEcCCCCCCCCcEEEEEEecCCCE
Confidence 35899 76766677788888776643
Done!