Query 028616
Match_columns 206
No_of_seqs 210 out of 1450
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 14:18:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028616.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028616hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4341 F-box protein containi 99.3 1.8E-13 3.9E-18 120.4 1.1 120 2-129 152-275 (483)
2 KOG1947 Leucine rich repeat pr 99.3 2.9E-12 6.3E-17 114.6 8.2 127 4-132 178-331 (482)
3 KOG2120 SCF ubiquitin ligase, 99.3 3.8E-12 8.1E-17 108.4 5.6 121 2-129 223-345 (419)
4 KOG4341 F-box protein containi 99.2 1.7E-11 3.8E-16 108.0 5.9 120 1-128 307-432 (483)
5 KOG1947 Leucine rich repeat pr 99.1 1E-10 2.2E-15 104.7 6.8 97 6-108 235-332 (482)
6 KOG2120 SCF ubiquitin ligase, 99.0 1.1E-10 2.4E-15 99.5 3.4 123 1-129 247-370 (419)
7 PF14580 LRR_9: Leucine-rich r 98.9 6.8E-10 1.5E-14 88.7 1.3 114 7-132 35-150 (175)
8 KOG2739 Leucine-rich acidic nu 98.8 5.5E-10 1.2E-14 93.2 0.4 115 8-132 37-153 (260)
9 KOG1909 Ran GTPase-activating 98.8 1.6E-09 3.4E-14 93.8 2.6 97 6-110 177-283 (382)
10 cd00116 LRR_RI Leucine-rich re 98.8 2.7E-08 5.9E-13 84.7 10.1 87 14-108 137-232 (319)
11 KOG1909 Ran GTPase-activating 98.8 9.6E-09 2.1E-13 89.0 5.2 93 10-110 209-311 (382)
12 cd00116 LRR_RI Leucine-rich re 98.8 6.5E-08 1.4E-12 82.4 10.2 117 7-131 158-287 (319)
13 KOG3207 Beta-tubulin folding c 98.6 1.7E-08 3.7E-13 89.7 3.5 99 3-108 135-233 (505)
14 KOG3665 ZYG-1-like serine/thre 98.4 2.6E-07 5.5E-12 88.0 5.2 86 13-108 121-206 (699)
15 PF14580 LRR_9: Leucine-rich r 98.4 1.4E-07 3E-12 75.4 1.3 116 2-131 5-122 (175)
16 KOG3207 Beta-tubulin folding c 98.3 2.4E-07 5.3E-12 82.5 1.8 121 5-132 109-232 (505)
17 KOG3864 Uncharacterized conser 98.1 2.8E-06 6.1E-11 69.0 4.1 105 16-129 103-211 (221)
18 PLN00113 leucine-rich repeat r 97.9 2.7E-05 5.9E-10 76.4 6.8 95 11-108 90-199 (968)
19 smart00367 LRR_CC Leucine-rich 97.9 1.6E-05 3.4E-10 43.5 2.8 25 13-37 1-25 (26)
20 KOG3665 ZYG-1-like serine/thre 97.9 3.3E-05 7.1E-10 73.8 6.8 122 4-130 138-283 (699)
21 KOG3864 Uncharacterized conser 97.6 6.3E-05 1.4E-09 61.2 3.3 93 1-101 113-208 (221)
22 PLN00113 leucine-rich repeat r 97.6 0.0001 2.3E-09 72.4 5.5 15 70-84 210-224 (968)
23 KOG0618 Serine/threonine phosp 97.6 5.2E-05 1.1E-09 73.2 3.1 108 3-117 373-496 (1081)
24 smart00367 LRR_CC Leucine-rich 97.4 0.00016 3.4E-09 39.4 2.9 24 71-94 1-25 (26)
25 COG5238 RNA1 Ran GTPase-activa 97.4 0.0012 2.5E-08 56.5 9.1 41 11-52 89-132 (388)
26 KOG4194 Membrane glycoprotein 97.4 9.6E-05 2.1E-09 68.6 2.4 112 13-132 316-449 (873)
27 KOG2982 Uncharacterized conser 97.4 8E-05 1.7E-09 64.2 1.6 94 5-107 62-156 (418)
28 KOG2739 Leucine-rich acidic nu 97.2 9.1E-05 2E-09 62.2 0.7 92 12-110 63-156 (260)
29 COG5238 RNA1 Ran GTPase-activa 97.2 0.0011 2.4E-08 56.6 7.0 103 12-117 28-140 (388)
30 PF13855 LRR_8: Leucine rich r 97.2 2.4E-05 5.1E-10 51.2 -2.6 37 70-107 23-59 (61)
31 PF12799 LRR_4: Leucine Rich r 97.2 0.00042 9E-09 42.7 3.1 37 72-110 1-37 (44)
32 KOG2123 Uncharacterized conser 97.2 0.00011 2.4E-09 62.8 0.6 105 13-131 18-126 (388)
33 PF13855 LRR_8: Leucine rich r 97.2 3.5E-05 7.5E-10 50.4 -2.1 61 14-84 1-61 (61)
34 KOG4194 Membrane glycoprotein 97.1 6.2E-05 1.3E-09 69.8 -1.6 86 13-110 364-452 (873)
35 KOG1644 U2-associated snRNP A' 97.1 0.00026 5.6E-09 57.8 2.0 85 39-131 63-149 (233)
36 PLN03210 Resistant to P. syrin 96.9 0.00056 1.2E-08 68.9 2.5 37 72-110 846-882 (1153)
37 KOG0618 Serine/threonine phosp 96.8 0.00036 7.7E-09 67.6 0.5 106 13-131 358-485 (1081)
38 KOG2982 Uncharacterized conser 96.8 0.0014 3E-08 56.7 3.6 84 17-107 48-131 (418)
39 PF13516 LRR_6: Leucine Rich r 96.7 0.0012 2.7E-08 35.0 2.0 24 71-94 1-24 (24)
40 PLN03210 Resistant to P. syrin 96.7 0.0014 3.1E-08 66.1 3.9 38 70-110 679-717 (1153)
41 PF13516 LRR_6: Leucine Rich r 96.7 0.0011 2.4E-08 35.1 1.7 24 13-37 1-24 (24)
42 KOG1859 Leucine-rich repeat pr 96.6 0.00068 1.5E-08 64.5 0.9 94 12-108 107-220 (1096)
43 PLN03150 hypothetical protein; 96.6 0.004 8.6E-08 59.0 5.7 85 15-110 419-503 (623)
44 PLN03150 hypothetical protein; 96.4 0.0055 1.2E-07 58.1 5.8 88 12-109 440-527 (623)
45 KOG1644 U2-associated snRNP A' 96.4 0.0013 2.9E-08 53.7 1.0 91 10-109 60-152 (233)
46 KOG2123 Uncharacterized conser 96.2 0.0017 3.6E-08 55.7 1.0 85 8-103 35-123 (388)
47 KOG0444 Cytoskeletal regulator 96.1 0.00064 1.4E-08 64.0 -2.5 57 70-130 243-299 (1255)
48 smart00368 LRR_RI Leucine rich 95.9 0.01 2.2E-07 32.8 2.8 25 72-96 2-26 (28)
49 PF12799 LRR_4: Leucine Rich r 95.9 0.0065 1.4E-07 37.3 2.1 16 70-85 22-37 (44)
50 KOG1259 Nischarin, modulator o 95.8 0.0072 1.6E-07 52.5 2.8 54 71-129 306-359 (490)
51 KOG3763 mRNA export factor TAP 95.7 0.016 3.4E-07 53.6 5.0 96 30-132 208-311 (585)
52 smart00368 LRR_RI Leucine rich 95.5 0.02 4.3E-07 31.6 3.1 25 14-39 2-26 (28)
53 KOG1259 Nischarin, modulator o 95.5 0.011 2.4E-07 51.4 2.7 35 12-50 305-339 (490)
54 KOG3735 Tropomodulin and leiom 95.4 0.034 7.3E-07 48.6 5.5 96 3-102 187-285 (353)
55 PRK15387 E3 ubiquitin-protein 95.2 0.0084 1.8E-07 58.2 1.5 33 72-109 282-314 (788)
56 KOG4658 Apoptotic ATPase [Sign 95.2 0.012 2.7E-07 57.9 2.6 36 13-48 544-579 (889)
57 KOG3763 mRNA export factor TAP 95.1 0.035 7.6E-07 51.4 4.9 92 5-103 209-307 (585)
58 KOG4579 Leucine-rich repeat (L 95.0 0.0059 1.3E-07 47.4 -0.3 95 5-110 15-113 (177)
59 KOG0617 Ras suppressor protein 94.7 0.0022 4.7E-08 51.7 -3.3 78 13-108 32-113 (264)
60 KOG4308 LRR-containing protein 94.6 0.0078 1.7E-07 55.3 -0.6 90 13-110 114-217 (478)
61 KOG1859 Leucine-rich repeat pr 94.2 0.0052 1.1E-07 58.7 -2.7 96 11-110 184-292 (1096)
62 KOG4658 Apoptotic ATPase [Sign 94.1 0.037 8E-07 54.6 2.8 42 9-52 566-607 (889)
63 KOG4237 Extracellular matrix p 94.0 0.025 5.4E-07 50.7 1.4 87 10-110 270-359 (498)
64 KOG0617 Ras suppressor protein 94.0 0.0042 9E-08 50.0 -3.3 91 12-114 54-167 (264)
65 KOG0472 Leucine-rich repeat pr 93.8 0.074 1.6E-06 48.0 3.9 97 8-110 429-541 (565)
66 KOG0531 Protein phosphatase 1, 93.4 0.025 5.4E-07 50.8 0.3 87 12-113 116-202 (414)
67 KOG0444 Cytoskeletal regulator 93.3 0.012 2.6E-07 55.7 -1.8 16 37-52 170-185 (1255)
68 KOG4308 LRR-containing protein 93.2 0.029 6.2E-07 51.7 0.4 52 59-110 245-303 (478)
69 KOG0531 Protein phosphatase 1, 92.7 0.028 6.1E-07 50.5 -0.5 87 12-114 93-179 (414)
70 PRK15387 E3 ubiquitin-protein 92.6 0.09 2E-06 51.2 2.9 12 97-108 282-293 (788)
71 KOG4579 Leucine-rich repeat (L 92.2 0.056 1.2E-06 42.1 0.7 90 11-113 50-139 (177)
72 PF13504 LRR_7: Leucine rich r 90.8 0.18 3.8E-06 24.5 1.5 12 73-84 2-13 (17)
73 COG4886 Leucine-rich repeat (L 88.7 0.26 5.6E-06 43.5 1.9 60 15-86 141-200 (394)
74 PF07723 LRR_2: Leucine Rich R 88.2 0.36 7.8E-06 26.1 1.6 25 73-97 1-26 (26)
75 PRK15370 E3 ubiquitin-protein 87.4 0.77 1.7E-05 44.7 4.4 33 73-109 263-295 (754)
76 KOG4237 Extracellular matrix p 87.1 0.4 8.6E-06 43.2 2.0 86 36-131 270-355 (498)
77 PRK15386 type III secretion pr 85.8 0.51 1.1E-05 42.8 2.1 71 12-106 50-121 (426)
78 PF00560 LRR_1: Leucine Rich R 83.8 0.54 1.2E-05 24.1 0.8 12 74-85 2-13 (22)
79 PRK15370 E3 ubiquitin-protein 83.2 1.9 4.1E-05 42.0 4.9 34 14-52 325-358 (754)
80 COG4886 Leucine-rich repeat (L 79.5 1 2.2E-05 39.7 1.6 87 13-113 115-202 (394)
81 PRK15386 type III secretion pr 79.5 0.82 1.8E-05 41.5 0.9 31 15-49 73-103 (426)
82 smart00369 LRR_TYP Leucine-ric 78.6 1.7 3.8E-05 22.8 1.7 14 72-85 2-15 (26)
83 smart00370 LRR Leucine-rich re 78.6 1.7 3.8E-05 22.8 1.7 14 72-85 2-15 (26)
84 PF10446 DUF2457: Protein of u 69.3 3.6 7.8E-05 37.4 2.3 6 124-129 38-43 (458)
85 KOG0472 Leucine-rich repeat pr 68.5 1.5 3.3E-05 39.8 -0.2 41 67-109 247-287 (565)
86 smart00365 LRR_SD22 Leucine-ri 66.7 5.2 0.00011 21.6 1.8 14 72-85 2-15 (26)
87 PF13306 LRR_5: Leucine rich r 63.4 2.2 4.7E-05 31.0 -0.2 100 12-130 10-111 (129)
88 KOG3735 Tropomodulin and leiom 54.0 9 0.0002 33.8 2.0 35 30-71 245-279 (353)
89 PF07735 FBA_2: F-box associat 52.9 59 0.0013 21.0 5.5 30 75-104 35-69 (70)
90 smart00364 LRR_BAC Leucine-ric 52.5 8.3 0.00018 20.9 1.0 14 72-85 2-15 (26)
91 smart00446 LRRcap occurring C- 38.8 20 0.00043 19.4 1.1 16 91-106 7-22 (26)
92 KOG1832 HIV-1 Vpr-binding prot 36.9 18 0.00039 36.2 1.3 24 59-82 1287-1310(1516)
93 PF08004 DUF1699: Protein of u 35.0 60 0.0013 24.6 3.6 60 72-132 17-77 (131)
94 PF08004 DUF1699: Protein of u 30.6 1.1E+02 0.0023 23.2 4.3 33 13-47 16-48 (131)
95 KOG1189 Global transcriptional 30.5 34 0.00073 33.6 2.0 9 133-141 861-869 (960)
96 COG5406 Nucleosome binding fac 29.8 43 0.00093 32.3 2.5 9 133-141 913-921 (1001)
97 KOG1832 HIV-1 Vpr-binding prot 26.5 58 0.0013 32.8 2.8 10 92-101 1295-1304(1516)
98 KOG0532 Leucine-rich repeat (L 25.0 21 0.00046 34.0 -0.3 82 13-107 188-270 (722)
99 KOG4364 Chromatin assembly fac 20.9 82 0.0018 30.5 2.6 27 115-144 503-531 (811)
100 PHA02811 putative host range p 20.5 43 0.00094 27.0 0.6 15 133-147 157-171 (197)
No 1
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.35 E-value=1.8e-13 Score=120.37 Aligned_cols=120 Identities=24% Similarity=0.319 Sum_probs=93.3
Q ss_pred CHHHHHHHHhcCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccC
Q 028616 2 SDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAY 81 (206)
Q Consensus 2 sd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~ 81 (206)
.++.+..+++.||+++.|+|.+|.++|+..+..+++.|++|+.|.|..+ ..+++..+..+++.||+|++||++.
T Consensus 152 ~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c------~~iT~~~Lk~la~gC~kL~~lNlSw 225 (483)
T KOG4341|consen 152 GDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSC------SSITDVSLKYLAEGCRKLKYLNLSW 225 (483)
T ss_pred CcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhccc------chhHHHHHHHHHHhhhhHHHhhhcc
Confidence 4566777888888888888888888888888888888888888887532 1457778888888888888888888
Q ss_pred Cc-CCHHHHHHHHhCCCCccEEeeeCCCCCCCChHHH---HhcCCCCceeCC
Q 028616 82 HV-ISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFM---KGNFPNLKVLGP 129 (206)
Q Consensus 82 ~~-it~~~l~~il~~c~~Le~LdL~~C~~v~~~~~~l---~~~~~~L~~L~~ 129 (206)
|. |+..++..+.++|+.|+.+.++||... ....+ ...|+-+.++++
T Consensus 226 c~qi~~~gv~~~~rG~~~l~~~~~kGC~e~--~le~l~~~~~~~~~i~~lnl 275 (483)
T KOG4341|consen 226 CPQISGNGVQALQRGCKELEKLSLKGCLEL--ELEALLKAAAYCLEILKLNL 275 (483)
T ss_pred CchhhcCcchHHhccchhhhhhhhcccccc--cHHHHHHHhccChHhhccch
Confidence 86 888888888888888888888888877 44443 255555666653
No 2
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=99.34 E-value=2.9e-12 Score=114.64 Aligned_cols=127 Identities=30% Similarity=0.407 Sum_probs=92.8
Q ss_pred HHHHHHHhcCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecc----------------------cCCCCCC-CCC
Q 028616 4 SIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMH----------------------PLDTADK-LSQ 60 (206)
Q Consensus 4 ~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~----------------------~~~~~g~-~v~ 60 (206)
.++..+.+.+|+|+.|.+..|..+++.++.+++..|++|+.|.++.. .++.... .++
T Consensus 178 ~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~is 257 (482)
T KOG1947|consen 178 KILLRLLSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVT 257 (482)
T ss_pred HHHHHHHhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccC
Confidence 44455555566666666666666666666666666666666666430 0111112 378
Q ss_pred hHHHHHHHhcCCCCcEEEccCCc-CCHHHHHHHHhCCCCccEEeeeCCCCCCCChHH---HHhcCCCCceeCCCCc
Q 028616 61 DDEANAIASTMPKLKRLEMAYHV-ISTEIVLKILSSCALLEFLDLRGCWDVKLDDKF---MKGNFPNLKVLGPFVM 132 (206)
Q Consensus 61 d~~~~~ia~~~p~Lk~L~L~~~~-it~~~l~~il~~c~~Le~LdL~~C~~v~~~~~~---l~~~~~~L~~L~~~~~ 132 (206)
+.++.+++..||+|++|.+.+|. +|+.++.+++++||+|++|+|++|..+ ++.. +...|++|+.|.....
T Consensus 258 d~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~--~d~~l~~~~~~c~~l~~l~~~~~ 331 (482)
T KOG1947|consen 258 DIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL--TDSGLEALLKNCPNLRELKLLSL 331 (482)
T ss_pred chhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc--hHHHHHHHHHhCcchhhhhhhhc
Confidence 99999999999999999999998 999999999999999999999999998 5443 3466998888776543
No 3
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=3.8e-12 Score=108.41 Aligned_cols=121 Identities=26% Similarity=0.237 Sum_probs=88.0
Q ss_pred CHHHHHHHHhcCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccC
Q 028616 2 SDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAY 81 (206)
Q Consensus 2 sd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~ 81 (206)
+|..+..|| +..+|+.|+|+.|..+|..+++.|...|+.|..|+|+++.. .++..-.+++.--++|++|||+|
T Consensus 223 dD~I~~~iA-kN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l------~~~~Vtv~V~hise~l~~LNlsG 295 (419)
T KOG2120|consen 223 DDPIVNTIA-KNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFL------FTEKVTVAVAHISETLTQLNLSG 295 (419)
T ss_pred CcHHHHHHh-ccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhc------cchhhhHHHhhhchhhhhhhhhh
Confidence 455666666 78999999999999999999999999999999999986632 12332233343447888888888
Q ss_pred Cc--CCHHHHHHHHhCCCCccEEeeeCCCCCCCChHHHHhcCCCCceeCC
Q 028616 82 HV--ISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP 129 (206)
Q Consensus 82 ~~--it~~~l~~il~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~ 129 (206)
++ +-...+..+++.||+|..|||+.|..+..+-....-+++.|++|.+
T Consensus 296 ~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl 345 (419)
T KOG2120|consen 296 YRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL 345 (419)
T ss_pred hHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence 75 6666777788888888888888887773322223355666766665
No 4
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.21 E-value=1.7e-11 Score=107.97 Aligned_cols=120 Identities=22% Similarity=0.339 Sum_probs=72.8
Q ss_pred CCHHHHHHHHhcCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEcc
Q 028616 1 MSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMA 80 (206)
Q Consensus 1 Isd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~ 80 (206)
|+|..+.++.++|++|++|-|+.|.++|+.++..++++|+.|+.|.+.... .+.+..+..++.+||.|+.|.|+
T Consensus 307 ~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~------~~~d~tL~sls~~C~~lr~lsls 380 (483)
T KOG4341|consen 307 ITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECG------LITDGTLASLSRNCPRLRVLSLS 380 (483)
T ss_pred CchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccc------eehhhhHhhhccCCchhccCChh
Confidence 466777777777777777777777777777777777777777777664221 23444566666666777777666
Q ss_pred CCc-CCHHHHHHHHh---CCCCccEEeeeCCCCCCCChHHHH--hcCCCCceeC
Q 028616 81 YHV-ISTEIVLKILS---SCALLEFLDLRGCWDVKLDDKFMK--GNFPNLKVLG 128 (206)
Q Consensus 81 ~~~-it~~~l~~il~---~c~~Le~LdL~~C~~v~~~~~~l~--~~~~~L~~L~ 128 (206)
.|. ||++|+..+.. +...|+.|.|.+|+.+ ++..+. ..|++|+.+.
T Consensus 381 hce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i--~d~~Le~l~~c~~Leri~ 432 (483)
T KOG4341|consen 381 HCELITDEGIRHLSSSSCSLEGLEVLELDNCPLI--TDATLEHLSICRNLERIE 432 (483)
T ss_pred hhhhhhhhhhhhhhhccccccccceeeecCCCCc--hHHHHHHHhhCcccceee
Confidence 665 66665554433 2245555555555555 333322 4455555433
No 5
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=99.12 E-value=1e-10 Score=104.65 Aligned_cols=97 Identities=22% Similarity=0.264 Sum_probs=83.3
Q ss_pred HHHHHhcCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCc-C
Q 028616 6 VAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHV-I 84 (206)
Q Consensus 6 l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~-i 84 (206)
...+++.|++|+.|++++|..+|+.++.++++.||+|+.|++..+. .+++.++.+|+..||+|++|+|++|. +
T Consensus 235 ~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~------~lt~~gl~~i~~~~~~L~~L~l~~c~~~ 308 (482)
T KOG1947|consen 235 LLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCS------NLTDEGLVSIAERCPSLRELDLSGCHGL 308 (482)
T ss_pred hhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCC------ccchhHHHHHHHhcCcccEEeeecCccc
Confidence 3447777999999999999889999999999999999999875432 27899999999999999999999997 8
Q ss_pred CHHHHHHHHhCCCCccEEeeeCCC
Q 028616 85 STEIVLKILSSCALLEFLDLRGCW 108 (206)
Q Consensus 85 t~~~l~~il~~c~~Le~LdL~~C~ 108 (206)
++.++..++.+||+|+.|.+..+.
T Consensus 309 ~d~~l~~~~~~c~~l~~l~~~~~~ 332 (482)
T KOG1947|consen 309 TDSGLEALLKNCPNLRELKLLSLN 332 (482)
T ss_pred hHHHHHHHHHhCcchhhhhhhhcC
Confidence 899999999999988887655544
No 6
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=1.1e-10 Score=99.53 Aligned_cols=123 Identities=17% Similarity=0.235 Sum_probs=93.6
Q ss_pred CCHHHHHHHHhcCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEcc
Q 028616 1 MSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMA 80 (206)
Q Consensus 1 Isd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~ 80 (206)
+|..++..+...|+.|..|+|++|...+++.-.++++--++|++|+|++.+- .+.+..+..++++||+|.+|+|+
T Consensus 247 ~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rr-----nl~~sh~~tL~~rcp~l~~LDLS 321 (419)
T KOG2120|consen 247 FTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRR-----NLQKSHLSTLVRRCPNLVHLDLS 321 (419)
T ss_pred cchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHh-----hhhhhHHHHHHHhCCceeeeccc
Confidence 4667888899999999999999999888886666777789999999975432 34566788888999999999999
Q ss_pred CCc-CCHHHHHHHHhCCCCccEEeeeCCCCCCCChHHHHhcCCCCceeCC
Q 028616 81 YHV-ISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP 129 (206)
Q Consensus 81 ~~~-it~~~l~~il~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~ 129 (206)
.|. +++ ++..++-.++-|++|.|+.|..+..+.-......|.|.+|..
T Consensus 322 D~v~l~~-~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv 370 (419)
T KOG2120|consen 322 DSVMLKN-DCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDV 370 (419)
T ss_pred cccccCc-hHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEe
Confidence 997 888 555555579999999999998873221111244555655554
No 7
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.86 E-value=6.8e-10 Score=88.71 Aligned_cols=114 Identities=23% Similarity=0.208 Sum_probs=55.2
Q ss_pred HHHHhcCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCH
Q 028616 7 AQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVIST 86 (206)
Q Consensus 7 ~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~ 86 (206)
+.+...+.+|+.|+|++|.-.+-.++.. +++|+.|.++.+.+. .+. ..+...+|+|++|.|++|+|++
T Consensus 35 e~L~~~l~~L~~L~Ls~N~I~~l~~l~~----L~~L~~L~L~~N~I~----~i~----~~l~~~lp~L~~L~L~~N~I~~ 102 (175)
T PF14580_consen 35 ENLGATLDKLEVLDLSNNQITKLEGLPG----LPRLKTLDLSNNRIS----SIS----EGLDKNLPNLQELYLSNNKISD 102 (175)
T ss_dssp -S--TT-TT--EEE-TTS--S--TT--------TT--EEE--SS-------S-C----HHHHHH-TT--EEE-TTS---S
T ss_pred cchhhhhcCCCEEECCCCCCccccCccC----hhhhhhcccCCCCCC----ccc----cchHHhCCcCCEEECcCCcCCC
Confidence 3444456778888888874322334443 477888888766442 111 1233468999999999999887
Q ss_pred HHHHHHHhCCCCccEEeeeCCCCCCCChHH--HHhcCCCCceeCCCCc
Q 028616 87 EIVLKILSSCALLEFLDLRGCWDVKLDDKF--MKGNFPNLKVLGPFVM 132 (206)
Q Consensus 87 ~~l~~il~~c~~Le~LdL~~C~~v~~~~~~--l~~~~~~L~~L~~~~~ 132 (206)
-.-...++.||+|+.|+|.+++......+. +...+|+|+.|.....
T Consensus 103 l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 103 LNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp CCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEET
T ss_pred hHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEEc
Confidence 655566778999999999999877555553 5689999999998554
No 8
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=98.85 E-value=5.5e-10 Score=93.24 Aligned_cols=115 Identities=20% Similarity=0.172 Sum_probs=90.7
Q ss_pred HHHhcCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHH
Q 028616 8 QIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTE 87 (206)
Q Consensus 8 ~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~ 87 (206)
.+...+..|+.|++.++...|-.++..+ |+||+|.++.+.. ....++..++..+|+|++|++++|+|++-
T Consensus 37 gl~d~~~~le~ls~~n~gltt~~~~P~L----p~LkkL~lsdn~~------~~~~~l~vl~e~~P~l~~l~ls~Nki~~l 106 (260)
T KOG2739|consen 37 GLTDEFVELELLSVINVGLTTLTNFPKL----PKLKKLELSDNYR------RVSGGLEVLAEKAPNLKVLNLSGNKIKDL 106 (260)
T ss_pred cccccccchhhhhhhccceeecccCCCc----chhhhhcccCCcc------cccccceehhhhCCceeEEeecCCccccc
Confidence 3445577888899988877777777666 7899999986621 12345667788889999999999999886
Q ss_pred HHHHHHhCCCCccEEeeeCCCCCCCChHH--HHhcCCCCceeCCCCc
Q 028616 88 IVLKILSSCALLEFLDLRGCWDVKLDDKF--MKGNFPNLKVLGPFVM 132 (206)
Q Consensus 88 ~l~~il~~c~~Le~LdL~~C~~v~~~~~~--l~~~~~~L~~L~~~~~ 132 (206)
.-..-++..++|..|++++|.....++.. +...+|+|++|.....
T Consensus 107 stl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 107 STLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred cccchhhhhcchhhhhcccCCccccccHHHHHHHHhhhhcccccccc
Confidence 66667788999999999999988777775 4477889999888665
No 9
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.83 E-value=1.6e-09 Score=93.80 Aligned_cols=97 Identities=23% Similarity=0.281 Sum_probs=47.9
Q ss_pred HHHHHhcCCCCcEEEeccCCCCCHHHHHHHH---hcCCCCceEEeecccCCCCCCCCChHHHHHHHhcC---CCCcEEEc
Q 028616 6 VAQIAGRLSAVTFLDLSYCSKIGAPALEAIG---KHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTM---PKLKRLEM 79 (206)
Q Consensus 6 l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~---~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~---p~Lk~L~L 79 (206)
+..+.+.+|.|+.+.++.++ |-.+|+.+++ ++||+|+.|+|..+ .++..+..++|..+ |+|+.|++
T Consensus 177 ~A~~~~~~~~leevr~~qN~-I~~eG~~al~eal~~~~~LevLdl~DN-------tft~egs~~LakaL~s~~~L~El~l 248 (382)
T KOG1909|consen 177 LAEAFQSHPTLEEVRLSQNG-IRPEGVTALAEALEHCPHLEVLDLRDN-------TFTLEGSVALAKALSSWPHLRELNL 248 (382)
T ss_pred HHHHHHhccccceEEEeccc-ccCchhHHHHHHHHhCCcceeeecccc-------hhhhHHHHHHHHHhcccchheeecc
Confidence 33444445556666655542 4444443332 34566666655433 23445555554433 44555555
Q ss_pred cCCcCCHHHHHHHHh----CCCCccEEeeeCCCCC
Q 028616 80 AYHVISTEIVLKILS----SCALLEFLDLRGCWDV 110 (206)
Q Consensus 80 ~~~~it~~~l~~il~----~c~~Le~LdL~~C~~v 110 (206)
+.|.+.+.|..+++. +.|.|+.|.+.+|.-.
T Consensus 249 ~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt 283 (382)
T KOG1909|consen 249 GDCLLENEGAIAFVDALKESAPSLEVLELAGNEIT 283 (382)
T ss_pred cccccccccHHHHHHHHhccCCCCceeccCcchhH
Confidence 555555555444332 2355555555555533
No 10
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.82 E-value=2.7e-08 Score=84.74 Aligned_cols=87 Identities=22% Similarity=0.133 Sum_probs=39.2
Q ss_pred CCCcEEEeccCCCCCHHHHHH---HHhcCCCCceEEeecccCCCCCCCCChHHHHHHHh---cCCCCcEEEccCCcCCHH
Q 028616 14 SAVTFLDLSYCSKIGAPALEA---IGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIAS---TMPKLKRLEMAYHVISTE 87 (206)
Q Consensus 14 ~~L~~L~Ls~c~~it~~~l~~---l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~---~~p~Lk~L~L~~~~it~~ 87 (206)
++|+.|+|++|. ++..++.. ....|++|+.|.++.+. ++..++..++. .+++|++|+|++|.+++.
T Consensus 137 ~~L~~L~L~~n~-l~~~~~~~~~~~~~~~~~L~~L~l~~n~-------l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~ 208 (319)
T cd00116 137 PALEKLVLGRNR-LEGASCEALAKALRANRDLKELNLANNG-------IGDAGIRALAEGLKANCNLEVLDLNNNGLTDE 208 (319)
T ss_pred CCceEEEcCCCc-CCchHHHHHHHHHHhCCCcCEEECcCCC-------CchHHHHHHHHHHHhCCCCCEEeccCCccChH
Confidence 666666666653 44333322 22344566666665432 22233332222 223555555555544444
Q ss_pred HHHHH---HhCCCCccEEeeeCCC
Q 028616 88 IVLKI---LSSCALLEFLDLRGCW 108 (206)
Q Consensus 88 ~l~~i---l~~c~~Le~LdL~~C~ 108 (206)
++..+ +..+++|++|++++|.
T Consensus 209 ~~~~l~~~~~~~~~L~~L~ls~n~ 232 (319)
T cd00116 209 GASALAETLASLKSLEVLNLGDNN 232 (319)
T ss_pred HHHHHHHHhcccCCCCEEecCCCc
Confidence 33222 2234445555555543
No 11
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.76 E-value=9.6e-09 Score=89.00 Aligned_cols=93 Identities=24% Similarity=0.187 Sum_probs=60.6
Q ss_pred HhcCCCCcEEEeccCCCCCHHHHHHHHhcC---CCCceEEeecccCCCCCCCCChHHHHHHH----hcCCCCcEEEccCC
Q 028616 10 AGRLSAVTFLDLSYCSKIGAPALEAIGKHC---KLLVVLCRNMHPLDTADKLSQDDEANAIA----STMPKLKRLEMAYH 82 (206)
Q Consensus 10 ~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c---~~L~~L~L~~~~~~~~g~~v~d~~~~~ia----~~~p~Lk~L~L~~~ 82 (206)
..+||+|++|+|+.|+ +|..|-.+|++.. |+|+.|+++.+ .+...|+.+++ ...|+|+.|.|.||
T Consensus 209 l~~~~~LevLdl~DNt-ft~egs~~LakaL~s~~~L~El~l~dc-------ll~~~Ga~a~~~al~~~~p~L~vl~l~gN 280 (382)
T KOG1909|consen 209 LEHCPHLEVLDLRDNT-FTLEGSVALAKALSSWPHLRELNLGDC-------LLENEGAIAFVDALKESAPSLEVLELAGN 280 (382)
T ss_pred HHhCCcceeeecccch-hhhHHHHHHHHHhcccchheeeccccc-------ccccccHHHHHHHHhccCCCCceeccCcc
Confidence 3458888888888775 5777766777654 44445555543 34555555554 34477888888888
Q ss_pred cCCHHHHHHHHhC---CCCccEEeeeCCCCC
Q 028616 83 VISTEIVLKILSS---CALLEFLDLRGCWDV 110 (206)
Q Consensus 83 ~it~~~l~~il~~---c~~Le~LdL~~C~~v 110 (206)
.||.++..+++.. -|.|++|+|++|..-
T Consensus 281 eIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 281 EITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred hhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 7777776665543 377888888877763
No 12
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.75 E-value=6.5e-08 Score=82.41 Aligned_cols=117 Identities=19% Similarity=0.087 Sum_probs=81.1
Q ss_pred HHHHhcCCCCcEEEeccCCCCCHHHHHHHHhcC---CCCceEEeecccCCCCCCCCChHHHHHH---HhcCCCCcEEEcc
Q 028616 7 AQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHC---KLLVVLCRNMHPLDTADKLSQDDEANAI---ASTMPKLKRLEMA 80 (206)
Q Consensus 7 ~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c---~~L~~L~L~~~~~~~~g~~v~d~~~~~i---a~~~p~Lk~L~L~ 80 (206)
......+++|+.|+|++|. ++..++..+++.+ ++|+.|.++.+. +++.++..+ ...+|+|++|+|+
T Consensus 158 ~~~~~~~~~L~~L~l~~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n~-------i~~~~~~~l~~~~~~~~~L~~L~ls 229 (319)
T cd00116 158 AKALRANRDLKELNLANNG-IGDAGIRALAEGLKANCNLEVLDLNNNG-------LTDEGASALAETLASLKSLEVLNLG 229 (319)
T ss_pred HHHHHhCCCcCEEECcCCC-CchHHHHHHHHHHHhCCCCCEEeccCCc-------cChHHHHHHHHHhcccCCCCEEecC
Confidence 3344467889999999974 7877777766544 489999887653 344444443 3467899999999
Q ss_pred CCcCCHHHHHHHHhCC----CCccEEeeeCCCCCCCChHHHH---hcCCCCceeCCCC
Q 028616 81 YHVISTEIVLKILSSC----ALLEFLDLRGCWDVKLDDKFMK---GNFPNLKVLGPFV 131 (206)
Q Consensus 81 ~~~it~~~l~~il~~c----~~Le~LdL~~C~~v~~~~~~l~---~~~~~L~~L~~~~ 131 (206)
+|.+++.++..++..+ ++|++|++++|.........+. ..+++|+.+.+..
T Consensus 230 ~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~ 287 (319)
T cd00116 230 DNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRG 287 (319)
T ss_pred CCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCC
Confidence 9999998888887775 7999999999865411112222 3446677776643
No 13
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=1.7e-08 Score=89.73 Aligned_cols=99 Identities=22% Similarity=0.058 Sum_probs=78.5
Q ss_pred HHHHHHHHhcCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCC
Q 028616 3 DSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYH 82 (206)
Q Consensus 3 d~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~ 82 (206)
+.+....++.||+++.|+||.+-.-.-..+..|++.+|+|+.|+|+.+.+.......... .+++||.|.|++|
T Consensus 135 ~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~-------~l~~lK~L~l~~C 207 (505)
T KOG3207|consen 135 DAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTL-------LLSHLKQLVLNSC 207 (505)
T ss_pred ccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchh-------hhhhhheEEeccC
Confidence 334446788899999999999744345778889999999999999877654332222211 6689999999999
Q ss_pred cCCHHHHHHHHhCCCCccEEeeeCCC
Q 028616 83 VISTEIVLKILSSCALLEFLDLRGCW 108 (206)
Q Consensus 83 ~it~~~l~~il~~c~~Le~LdL~~C~ 108 (206)
.++...+..++..||+|+.|.|..+.
T Consensus 208 Gls~k~V~~~~~~fPsl~~L~L~~N~ 233 (505)
T KOG3207|consen 208 GLSWKDVQWILLTFPSLEVLYLEANE 233 (505)
T ss_pred CCCHHHHHHHHHhCCcHHHhhhhccc
Confidence 99999999999999999999998874
No 14
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.43 E-value=2.6e-07 Score=88.01 Aligned_cols=86 Identities=20% Similarity=0.188 Sum_probs=66.7
Q ss_pred CCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHHHHH
Q 028616 13 LSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKI 92 (206)
Q Consensus 13 ~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l~~i 92 (206)
-.+|+.|+|++...++......++..+|+|++|.+++. .+..+.+..+..++|+|+.|+|++++|++-. -
T Consensus 121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~-------~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~---G 190 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGR-------QFDNDDFSQLCASFPNLRSLDISGTNISNLS---G 190 (699)
T ss_pred HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCc-------eecchhHHHHhhccCccceeecCCCCccCcH---H
Confidence 67899999999888888899999999999999988743 3445568888889999999999999888752 2
Q ss_pred HhCCCCccEEeeeCCC
Q 028616 93 LSSCALLEFLDLRGCW 108 (206)
Q Consensus 93 l~~c~~Le~LdL~~C~ 108 (206)
++++++|+.|.+++-+
T Consensus 191 IS~LknLq~L~mrnLe 206 (699)
T KOG3665|consen 191 ISRLKNLQVLSMRNLE 206 (699)
T ss_pred HhccccHHHHhccCCC
Confidence 3455555555555433
No 15
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.35 E-value=1.4e-07 Score=75.43 Aligned_cols=116 Identities=22% Similarity=0.222 Sum_probs=38.1
Q ss_pred CHHHHHHHHhc--CCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEc
Q 028616 2 SDSIVAQIAGR--LSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEM 79 (206)
Q Consensus 2 sd~~l~~l~~~--~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L 79 (206)
|...++.+++. +..+++|+|+++ .|+ .++.++..+.+|+.|.|+.+.+. . +..+ ..+++|+.|++
T Consensus 5 t~~~i~~~~~~~n~~~~~~L~L~~n-~I~--~Ie~L~~~l~~L~~L~Ls~N~I~-------~--l~~l-~~L~~L~~L~L 71 (175)
T PF14580_consen 5 TANMIEQIAQYNNPVKLRELNLRGN-QIS--TIENLGATLDKLEVLDLSNNQIT-------K--LEGL-PGLPRLKTLDL 71 (175)
T ss_dssp ----------------------------------S--TT-TT--EEE-TTS--S-----------TT-----TT--EEE-
T ss_pred ccccccccccccccccccccccccc-ccc--cccchhhhhcCCCEEECCCCCCc-------c--ccCc-cChhhhhhccc
Confidence 44556666653 567899999997 465 46677777899999999877542 1 1112 26799999999
Q ss_pred cCCcCCHHHHHHHHhCCCCccEEeeeCCCCCCCChHHHHhcCCCCceeCCCC
Q 028616 80 AYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPFV 131 (206)
Q Consensus 80 ~~~~it~~~l~~il~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~~~ 131 (206)
++|+|+.-+- .+.+.||+|+.|.|+++.-.....-.-.+.+|+|+.|.+..
T Consensus 72 ~~N~I~~i~~-~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~ 122 (175)
T PF14580_consen 72 SNNRISSISE-GLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEG 122 (175)
T ss_dssp -SS---S-CH-HHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT
T ss_pred CCCCCCcccc-chHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccC
Confidence 9999887521 34467999999999988755334322236799999998864
No 16
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.30 E-value=2.4e-07 Score=82.49 Aligned_cols=121 Identities=20% Similarity=0.145 Sum_probs=88.5
Q ss_pred HHHHHHhc---CCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccC
Q 028616 5 IVAQIAGR---LSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAY 81 (206)
Q Consensus 5 ~l~~l~~~---~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~ 81 (206)
|+..|+.+ ++.|+.+.|.+| .+...+....++.||+++.|+|+.+-+ -.-..+..||+.+|+|+.|+|+.
T Consensus 109 GfDki~akQsn~kkL~~IsLdn~-~V~~~~~~~~~k~~~~v~~LdLS~NL~------~nw~~v~~i~eqLp~Le~LNls~ 181 (505)
T KOG3207|consen 109 GFDKIAAKQSNLKKLREISLDNY-RVEDAGIEEYSKILPNVRDLDLSRNLF------HNWFPVLKIAEQLPSLENLNLSS 181 (505)
T ss_pred cHHHHHHHhhhHHhhhheeecCc-cccccchhhhhhhCCcceeecchhhhH------HhHHHHHHHHHhcccchhccccc
Confidence 45566655 677888899886 478778778899999999999986532 13577889999999999999999
Q ss_pred CcCCHHHHHHHHhCCCCccEEeeeCCCCCCCChHHHHhcCCCCceeCCCCc
Q 028616 82 HVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPFVM 132 (206)
Q Consensus 82 ~~it~~~l~~il~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~~~~ 132 (206)
|++..-.=....-.+++|+.|.|++|...--+-..+...||.|+.|.+..-
T Consensus 182 Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N 232 (505)
T KOG3207|consen 182 NRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEAN 232 (505)
T ss_pred ccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcc
Confidence 974332212222267899999999998651111234588999999888543
No 17
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.12 E-value=2.8e-06 Score=68.99 Aligned_cols=105 Identities=19% Similarity=0.170 Sum_probs=82.4
Q ss_pred CcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCc-CCHHHHHHHHh
Q 028616 16 VTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHV-ISTEIVLKILS 94 (206)
Q Consensus 16 L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~-it~~~l~~il~ 94 (206)
++.++-+++ .|...|+..+ +.++.|+.|.+..+ +.+.+.++..|+.-.|+|+.|+|++|. ||+.|+.-+.
T Consensus 103 IeaVDAsds-~I~~eGle~L-~~l~~i~~l~l~~c------k~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~- 173 (221)
T KOG3864|consen 103 IEAVDASDS-SIMYEGLEHL-RDLRSIKSLSLANC------KYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLL- 173 (221)
T ss_pred EEEEecCCc-hHHHHHHHHH-hccchhhhheeccc------cchhhHHHHHhcccccchheeeccCCCeechhHHHHHH-
Confidence 466777765 5889999988 45788888888644 357889999999878999999999997 9999997766
Q ss_pred CCCCccEEeeeCCCCCCCChH---HHHhcCCCCceeCC
Q 028616 95 SCALLEFLDLRGCWDVKLDDK---FMKGNFPNLKVLGP 129 (206)
Q Consensus 95 ~c~~Le~LdL~~C~~v~~~~~---~l~~~~~~L~~L~~ 129 (206)
.+++|+.|.|++-..|.--.. .++...|++...+.
T Consensus 174 ~lknLr~L~l~~l~~v~~~e~~~~~Le~aLP~c~I~~~ 211 (221)
T KOG3864|consen 174 KLKNLRRLHLYDLPYVANLELVQRQLEEALPKCDIVGP 211 (221)
T ss_pred HhhhhHHHHhcCchhhhchHHHHHHHHHhCcccceech
Confidence 799999999988877622211 34578888887776
No 18
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=97.87 E-value=2.7e-05 Score=76.45 Aligned_cols=95 Identities=22% Similarity=0.255 Sum_probs=48.8
Q ss_pred hcCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCC---------------CCCCCChHHHHHHHhcCCCCc
Q 028616 11 GRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDT---------------ADKLSQDDEANAIASTMPKLK 75 (206)
Q Consensus 11 ~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~---------------~g~~v~d~~~~~ia~~~p~Lk 75 (206)
..+++|+.|+|++|. ++...-..+...+++|+.|+|+.+.+.. .+..+.......+ ..+++|+
T Consensus 90 ~~l~~L~~L~Ls~n~-~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~~~p~~~-~~l~~L~ 167 (968)
T PLN00113 90 FRLPYIQTINLSNNQ-LSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDI-GSFSSLK 167 (968)
T ss_pred hCCCCCCEEECCCCc-cCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECcCCcccccCChHH-hcCCCCC
Confidence 368888888888874 4433333445567788888876554310 0011111111112 2556666
Q ss_pred EEEccCCcCCHHHHHHHHhCCCCccEEeeeCCC
Q 028616 76 RLEMAYHVISTEIVLKILSSCALLEFLDLRGCW 108 (206)
Q Consensus 76 ~L~L~~~~it~~~l~~il~~c~~Le~LdL~~C~ 108 (206)
+|+|++|.++...-. -+.++++|++|+|++|.
T Consensus 168 ~L~L~~n~l~~~~p~-~~~~l~~L~~L~L~~n~ 199 (968)
T PLN00113 168 VLDLGGNVLVGKIPN-SLTNLTSLEFLTLASNQ 199 (968)
T ss_pred EEECccCcccccCCh-hhhhCcCCCeeeccCCC
Confidence 666666654332111 12345666666666554
No 19
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=97.86 E-value=1.6e-05 Score=43.47 Aligned_cols=25 Identities=36% Similarity=0.510 Sum_probs=23.7
Q ss_pred CCCCcEEEeccCCCCCHHHHHHHHh
Q 028616 13 LSAVTFLDLSYCSKIGAPALEAIGK 37 (206)
Q Consensus 13 ~~~L~~L~Ls~c~~it~~~l~~l~~ 37 (206)
||+|+.|+|++|.+||+.|+.+|++
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~~ 25 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALAK 25 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHhc
Confidence 7999999999999999999999976
No 20
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.86 E-value=3.3e-05 Score=73.78 Aligned_cols=122 Identities=16% Similarity=0.170 Sum_probs=78.4
Q ss_pred HHHHHHHhcCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCC-CCCC--------------CC-ChHHHHHH
Q 028616 4 SIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLD-TADK--------------LS-QDDEANAI 67 (206)
Q Consensus 4 ~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~-~~g~--------------~v-~d~~~~~i 67 (206)
.....++..+|.|++|.+++- .+...-+..+.+++|||+.|.++..++. ..|. .+ +-..+..+
T Consensus 138 ~W~~kig~~LPsL~sL~i~~~-~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~mrnLe~e~~~~l~~L 216 (699)
T KOG3665|consen 138 GWPKKIGTMLPSLRSLVISGR-QFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVLSMRNLEFESYQDLIDL 216 (699)
T ss_pred cHHHHHhhhCcccceEEecCc-eecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHHhccCCCCCchhhHHHH
Confidence 345678888999999999985 4555558899999999999999876653 2221 11 22344455
Q ss_pred HhcCCCCcEEEccCCc-CCHH-HHHHHH---hCCCCccEEeeeCCCCCCCChHH---HHhcCCCCceeCCC
Q 028616 68 ASTMPKLKRLEMAYHV-ISTE-IVLKIL---SSCALLEFLDLRGCWDVKLDDKF---MKGNFPNLKVLGPF 130 (206)
Q Consensus 68 a~~~p~Lk~L~L~~~~-it~~-~l~~il---~~c~~Le~LdL~~C~~v~~~~~~---l~~~~~~L~~L~~~ 130 (206)
. .+.+|+.|+||..+ .+.. -+...+ ..+|+|++||.++-. .+... +....|+|+.+...
T Consensus 217 F-~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTd---i~~~~le~ll~sH~~L~~i~~~ 283 (699)
T KOG3665|consen 217 F-NLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTD---INEEILEELLNSHPNLQQIAAL 283 (699)
T ss_pred h-cccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcc---hhHHHHHHHHHhCccHhhhhhh
Confidence 5 67888888888876 2222 233333 236888888877532 23333 23566777776653
No 21
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.56 E-value=6.3e-05 Score=61.25 Aligned_cols=93 Identities=17% Similarity=0.184 Sum_probs=72.6
Q ss_pred CCHHHHHHHHhcCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEcc
Q 028616 1 MSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMA 80 (206)
Q Consensus 1 Isd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~ 80 (206)
|...|++.+- .++.|+.|.+.+|..+.+-++..|+.-.++|+.|.|+.++ .|++.++..+. ++++||.|.|.
T Consensus 113 I~~eGle~L~-~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~------rIT~~GL~~L~-~lknLr~L~l~ 184 (221)
T KOG3864|consen 113 IMYEGLEHLR-DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCP------RITDGGLACLL-KLKNLRRLHLY 184 (221)
T ss_pred HHHHHHHHHh-ccchhhhheeccccchhhHHHHHhcccccchheeeccCCC------eechhHHHHHH-HhhhhHHHHhc
Confidence 3456777776 6999999999999999999999999999999999998443 56888888776 89999999999
Q ss_pred CCc-CCHHH-HHHHHh-CCCCccE
Q 028616 81 YHV-ISTEI-VLKILS-SCALLEF 101 (206)
Q Consensus 81 ~~~-it~~~-l~~il~-~c~~Le~ 101 (206)
+-. +.+.+ +..+++ .+|++..
T Consensus 185 ~l~~v~~~e~~~~~Le~aLP~c~I 208 (221)
T KOG3864|consen 185 DLPYVANLELVQRQLEEALPKCDI 208 (221)
T ss_pred CchhhhchHHHHHHHHHhCcccce
Confidence 876 55543 344443 4576654
No 22
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=97.56 E-value=0.0001 Score=72.39 Aligned_cols=15 Identities=27% Similarity=0.499 Sum_probs=6.8
Q ss_pred cCCCCcEEEccCCcC
Q 028616 70 TMPKLKRLEMAYHVI 84 (206)
Q Consensus 70 ~~p~Lk~L~L~~~~i 84 (206)
++++|++|+|++|.+
T Consensus 210 ~l~~L~~L~L~~n~l 224 (968)
T PLN00113 210 QMKSLKWIYLGYNNL 224 (968)
T ss_pred CcCCccEEECcCCcc
Confidence 344444444444443
No 23
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=97.55 E-value=5.2e-05 Score=73.21 Aligned_cols=108 Identities=25% Similarity=0.304 Sum_probs=68.0
Q ss_pred HHHHHHHHhcCCCCcEEEeccC--CCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCC--------------hHHHHH
Q 028616 3 DSIVAQIAGRLSAVTFLDLSYC--SKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQ--------------DDEANA 66 (206)
Q Consensus 3 d~~l~~l~~~~~~L~~L~Ls~c--~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~--------------d~~~~~ 66 (206)
|..+..+. ..++|+.|+|++| +-+.++.+..+ +.|+.|.|+++.+..-...+. -..+-.
T Consensus 373 d~c~p~l~-~~~hLKVLhLsyNrL~~fpas~~~kl----e~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fPe 447 (1081)
T KOG0618|consen 373 DSCFPVLV-NFKHLKVLHLSYNRLNSFPASKLRKL----EELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFPE 447 (1081)
T ss_pred ccchhhhc-cccceeeeeecccccccCCHHHHhch----HHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeechh
Confidence 33444443 6788888888887 33555555544 456666666554321000000 000112
Q ss_pred HHhcCCCCcEEEccCCcCCHHHHHHHHhCCCCccEEeeeCCCCCCCChHHH
Q 028616 67 IASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFM 117 (206)
Q Consensus 67 ia~~~p~Lk~L~L~~~~it~~~l~~il~~c~~Le~LdL~~C~~v~~~~~~l 117 (206)
++ .+|+|+.++|+.|.++...+...+.. |+|++|||+|+....++-+.+
T Consensus 448 ~~-~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~~l~~d~~~l 496 (1081)
T KOG0618|consen 448 LA-QLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNTRLVFDHKTL 496 (1081)
T ss_pred hh-hcCcceEEecccchhhhhhhhhhCCC-cccceeeccCCcccccchhhh
Confidence 22 56899999999999998888776654 999999999999765555544
No 24
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=97.43 E-value=0.00016 Score=39.39 Aligned_cols=24 Identities=21% Similarity=0.362 Sum_probs=19.7
Q ss_pred CCCCcEEEccCCc-CCHHHHHHHHh
Q 028616 71 MPKLKRLEMAYHV-ISTEIVLKILS 94 (206)
Q Consensus 71 ~p~Lk~L~L~~~~-it~~~l~~il~ 94 (206)
||+|++|+|++|. ||+.++.+|++
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~~ 25 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALAK 25 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHhc
Confidence 5788888888886 88888888765
No 25
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.41 E-value=0.0012 Score=56.52 Aligned_cols=41 Identities=24% Similarity=0.141 Sum_probs=27.1
Q ss_pred hcCCCCcEEEeccCCCCCHHH---HHHHHhcCCCCceEEeecccC
Q 028616 11 GRLSAVTFLDLSYCSKIGAPA---LEAIGKHCKLLVVLCRNMHPL 52 (206)
Q Consensus 11 ~~~~~L~~L~Ls~c~~it~~~---l~~l~~~c~~L~~L~L~~~~~ 52 (206)
-+||+|+..+||.|. ++... +.-+..+...|++|.++++.+
T Consensus 89 lkcp~l~~v~LSDNA-fg~~~~e~L~d~is~~t~l~HL~l~NnGl 132 (388)
T COG5238 89 LKCPRLQKVDLSDNA-FGSEFPEELGDLISSSTDLVHLKLNNNGL 132 (388)
T ss_pred hcCCcceeeeccccc-cCcccchHHHHHHhcCCCceeEEeecCCC
Confidence 368999999998874 44433 333444557788888876554
No 26
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=97.37 E-value=9.6e-05 Score=68.61 Aligned_cols=112 Identities=20% Similarity=0.185 Sum_probs=62.5
Q ss_pred CCCCcEEEeccCC--CCCHHHHHHHHhcCCCCceEEeecccCCCCC-----------------C--C-CChHHHHHHHhc
Q 028616 13 LSAVTFLDLSYCS--KIGAPALEAIGKHCKLLVVLCRNMHPLDTAD-----------------K--L-SQDDEANAIAST 70 (206)
Q Consensus 13 ~~~L~~L~Ls~c~--~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g-----------------~--~-v~d~~~~~ia~~ 70 (206)
|+.|+.|+|++|. .+....+..+ .+|+.|+|+.++++.-. . . .-.+++.++. +
T Consensus 316 tqkL~~LdLs~N~i~~l~~~sf~~L----~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~-g 390 (873)
T KOG4194|consen 316 TQKLKELDLSSNRITRLDEGSFRVL----SQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFN-G 390 (873)
T ss_pred cccceeEeccccccccCChhHHHHH----HHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhc-c
Confidence 7888888888862 2233444444 23444444433321100 0 0 1133444444 7
Q ss_pred CCCCcEEEccCCcCCHHHHHHHHhCCCCccEEeeeCCCCCCCChHHHHhcCCCCceeCCCCc
Q 028616 71 MPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPFVM 132 (206)
Q Consensus 71 ~p~Lk~L~L~~~~it~~~l~~il~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~~~~ 132 (206)
+|+|++|.|.||+|..-.-+++ .+++.||+|||.++.-..+...++ ..+ +||.|-+.+.
T Consensus 391 l~~LrkL~l~gNqlk~I~krAf-sgl~~LE~LdL~~NaiaSIq~nAF-e~m-~Lk~Lv~nSs 449 (873)
T KOG4194|consen 391 LPSLRKLRLTGNQLKSIPKRAF-SGLEALEHLDLGDNAIASIQPNAF-EPM-ELKELVMNSS 449 (873)
T ss_pred chhhhheeecCceeeecchhhh-ccCcccceecCCCCcceeeccccc-ccc-hhhhhhhccc
Confidence 9999999999997443333332 489999999999876543333222 223 5666666443
No 27
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.36 E-value=8e-05 Score=64.19 Aligned_cols=94 Identities=17% Similarity=0.123 Sum_probs=67.5
Q ss_pred HHHHHHhcCCCCcEEEeccCCCCCH-HHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCc
Q 028616 5 IVAQIAGRLSAVTFLDLSYCSKIGA-PALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHV 83 (206)
Q Consensus 5 ~l~~l~~~~~~L~~L~Ls~c~~it~-~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~ 83 (206)
.+..++.+|+.++.|+|.+| +|++ .-+.+|.++.|.|+.|+|+++++... +..+..-..+|+.|-|.|+.
T Consensus 62 d~~~~~~~~~~v~elDL~~N-~iSdWseI~~ile~lP~l~~LNls~N~L~s~--------I~~lp~p~~nl~~lVLNgT~ 132 (418)
T KOG2982|consen 62 DVMLFGSSVTDVKELDLTGN-LISDWSEIGAILEQLPALTTLNLSCNSLSSD--------IKSLPLPLKNLRVLVLNGTG 132 (418)
T ss_pred hHHHHHHHhhhhhhhhcccc-hhccHHHHHHHHhcCccceEeeccCCcCCCc--------cccCcccccceEEEEEcCCC
Confidence 46678888999999999986 5664 66778889999999999988765321 01111133577888887777
Q ss_pred CCHHHHHHHHhCCCCccEEeeeCC
Q 028616 84 ISTEIVLKILSSCALLEFLDLRGC 107 (206)
Q Consensus 84 it~~~l~~il~~c~~Le~LdL~~C 107 (206)
++-..+...++..|.++.|+++.+
T Consensus 133 L~w~~~~s~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 133 LSWTQSTSSLDDLPKVTELHMSDN 156 (418)
T ss_pred CChhhhhhhhhcchhhhhhhhccc
Confidence 777777777777777777766655
No 28
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=97.24 E-value=9.1e-05 Score=62.22 Aligned_cols=92 Identities=17% Similarity=0.149 Sum_probs=67.5
Q ss_pred cCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHH--HH
Q 028616 12 RLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTE--IV 89 (206)
Q Consensus 12 ~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~--~l 89 (206)
++|+|+.|.+|.++.--..+|..+++.||+|+.|+++.+.+.. -..+..+ +.+++|+.|.++.|.++.- -=
T Consensus 63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~------lstl~pl-~~l~nL~~Ldl~n~~~~~l~dyr 135 (260)
T KOG2739|consen 63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKD------LSTLRPL-KELENLKSLDLFNCSVTNLDDYR 135 (260)
T ss_pred CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcccc------ccccchh-hhhcchhhhhcccCCccccccHH
Confidence 4889999999998555567999999999999999998775421 1122222 3668999999999986651 12
Q ss_pred HHHHhCCCCccEEeeeCCCCC
Q 028616 90 LKILSSCALLEFLDLRGCWDV 110 (206)
Q Consensus 90 ~~il~~c~~Le~LdL~~C~~v 110 (206)
..+..-+|+|.+||-..+...
T Consensus 136 e~vf~ll~~L~~LD~~dv~~~ 156 (260)
T KOG2739|consen 136 EKVFLLLPSLKYLDGCDVDGE 156 (260)
T ss_pred HHHHHHhhhhccccccccCCc
Confidence 355667899999877666544
No 29
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.23 E-value=0.0011 Score=56.63 Aligned_cols=103 Identities=17% Similarity=0.163 Sum_probs=70.1
Q ss_pred cCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChH-------HHHHHHhcCCCCcEEEccCCcC
Q 028616 12 RLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDD-------EANAIASTMPKLKRLEMAYHVI 84 (206)
Q Consensus 12 ~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~-------~~~~ia~~~p~Lk~L~L~~~~i 84 (206)
....++.++||+|+ |+..+++.++++..+-+.|+...-.--+.|.. .++ -..+++ +||+|+.++||.|.+
T Consensus 28 ~~d~~~evdLSGNt-igtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~-kde~~~~L~~Ll~aLl-kcp~l~~v~LSDNAf 104 (388)
T COG5238 28 MMDELVEVDLSGNT-IGTEAMEELCNVIANVRNLRVVNFSDAFTGRD-KDELYSNLVMLLKALL-KCPRLQKVDLSDNAF 104 (388)
T ss_pred hhcceeEEeccCCc-ccHHHHHHHHHHHhhhcceeEeehhhhhhccc-HHHHHHHHHHHHHHHh-cCCcceeeecccccc
Confidence 48889999999986 88999999988776666665532111122221 111 123333 889999999999865
Q ss_pred CH---HHHHHHHhCCCCccEEeeeCCCCCCCChHHH
Q 028616 85 ST---EIVLKILSSCALLEFLDLRGCWDVKLDDKFM 117 (206)
Q Consensus 85 t~---~~l~~il~~c~~Le~LdL~~C~~v~~~~~~l 117 (206)
.. .-+..++++-..|++|-|++|.--...+..+
T Consensus 105 g~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~ri 140 (388)
T COG5238 105 GSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRI 140 (388)
T ss_pred CcccchHHHHHHhcCCCceeEEeecCCCCccchhHH
Confidence 44 4566778888999999999987665555443
No 30
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.21 E-value=2.4e-05 Score=51.21 Aligned_cols=37 Identities=22% Similarity=0.405 Sum_probs=16.8
Q ss_pred cCCCCcEEEccCCcCCHHHHHHHHhCCCCccEEeeeCC
Q 028616 70 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGC 107 (206)
Q Consensus 70 ~~p~Lk~L~L~~~~it~~~l~~il~~c~~Le~LdL~~C 107 (206)
.+++|++|+|++|.|+.-.- ..++++++|++|++++|
T Consensus 23 ~l~~L~~L~l~~N~l~~i~~-~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 23 NLPNLETLDLSNNNLTSIPP-DAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TGTTESEEEETSSSESEEET-TTTTTSTTESEEEETSS
T ss_pred CCCCCCEeEccCCccCccCH-HHHcCCCCCCEEeCcCC
Confidence 44555555555554432111 12345555555555554
No 31
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.19 E-value=0.00042 Score=42.69 Aligned_cols=37 Identities=24% Similarity=0.213 Sum_probs=25.0
Q ss_pred CCCcEEEccCCcCCHHHHHHHHhCCCCccEEeeeCCCCC
Q 028616 72 PKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDV 110 (206)
Q Consensus 72 p~Lk~L~L~~~~it~~~l~~il~~c~~Le~LdL~~C~~v 110 (206)
|+|++|+|++|+|++ +-..+.+|++|+.|++++|...
T Consensus 1 ~~L~~L~l~~N~i~~--l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQITD--LPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-SS--HGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCcc--cCchHhCCCCCCEEEecCCCCC
Confidence 578888888888775 3333667888888888887543
No 32
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.18 E-value=0.00011 Score=62.78 Aligned_cols=105 Identities=22% Similarity=0.169 Sum_probs=78.8
Q ss_pred CCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHHHHH
Q 028616 13 LSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKI 92 (206)
Q Consensus 13 ~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l~~i 92 (206)
+.+.+.||..+|. +++.. |.+..|.|+.|.|+.+.|. .+.. ...|.+|+.|.|..|.|.+-.-.+.
T Consensus 18 l~~vkKLNcwg~~-L~DIs---ic~kMp~lEVLsLSvNkIs---------sL~p-l~rCtrLkElYLRkN~I~sldEL~Y 83 (388)
T KOG2123|consen 18 LENVKKLNCWGCG-LDDIS---ICEKMPLLEVLSLSVNKIS---------SLAP-LQRCTRLKELYLRKNCIESLDELEY 83 (388)
T ss_pred HHHhhhhcccCCC-ccHHH---HHHhcccceeEEeeccccc---------cchh-HHHHHHHHHHHHHhcccccHHHHHH
Confidence 4477889999985 67644 4566799999999876431 1222 3489999999999999999998999
Q ss_pred HhCCCCccEEeeeCCCCCCCChH----HHHhcCCCCceeCCCC
Q 028616 93 LSSCALLEFLDLRGCWDVKLDDK----FMKGNFPNLKVLGPFV 131 (206)
Q Consensus 93 l~~c~~Le~LdL~~C~~v~~~~~----~l~~~~~~L~~L~~~~ 131 (206)
++++|+|+.|-|..++-..-.+. .+.+..|+|++|.-..
T Consensus 84 LknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLDnv~ 126 (388)
T KOG2123|consen 84 LKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLDNVP 126 (388)
T ss_pred HhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhccCcc
Confidence 99999999998865543322322 3558899999998743
No 33
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=97.17 E-value=3.5e-05 Score=50.40 Aligned_cols=61 Identities=20% Similarity=0.153 Sum_probs=42.7
Q ss_pred CCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcC
Q 028616 14 SAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVI 84 (206)
Q Consensus 14 ~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~i 84 (206)
|+|+.|+|++| +++.-.- ...+.+++|+.|.++.+.+. .+.. . ....+|+|++|+|++|+|
T Consensus 1 p~L~~L~l~~n-~l~~i~~-~~f~~l~~L~~L~l~~N~l~----~i~~---~-~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPP-DSFSNLPNLETLDLSNNNLT----SIPP---D-AFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSS-TESEECT-TTTTTGTTESEEEETSSSES----EEET---T-TTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCC-CCCccCH-HHHcCCCCCCEeEccCCccC----ccCH---H-HHcCCCCCCEEeCcCCcC
Confidence 78999999998 4553221 23356799999999877552 1111 1 234899999999999975
No 34
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=97.13 E-value=6.2e-05 Score=69.84 Aligned_cols=86 Identities=20% Similarity=0.064 Sum_probs=51.8
Q ss_pred CCCCcEEEeccCCC---CCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHH
Q 028616 13 LSAVTFLDLSYCSK---IGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIV 89 (206)
Q Consensus 13 ~~~L~~L~Ls~c~~---it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l 89 (206)
.++|+.|+|+.|.. |-+ +- +..+..++|++|+|.++.+. .|. -+|+ .+++.|++|+|.+|.|..--.
T Consensus 364 lssL~~LdLr~N~ls~~IED-aa-~~f~gl~~LrkL~l~gNqlk----~I~---krAf-sgl~~LE~LdL~~NaiaSIq~ 433 (873)
T KOG4194|consen 364 LSSLHKLDLRSNELSWCIED-AA-VAFNGLPSLRKLRLTGNQLK----SIP---KRAF-SGLEALEHLDLGDNAIASIQP 433 (873)
T ss_pred hhhhhhhcCcCCeEEEEEec-ch-hhhccchhhhheeecCceee----ecc---hhhh-ccCcccceecCCCCcceeecc
Confidence 66777777776531 122 22 22334688888888655331 222 2333 388999999999997554444
Q ss_pred HHHHhCCCCccEEeeeCCCCC
Q 028616 90 LKILSSCALLEFLDLRGCWDV 110 (206)
Q Consensus 90 ~~il~~c~~Le~LdL~~C~~v 110 (206)
.++-+- +|+.|-++.-..+
T Consensus 434 nAFe~m--~Lk~Lv~nSssfl 452 (873)
T KOG4194|consen 434 NAFEPM--ELKELVMNSSSFL 452 (873)
T ss_pred cccccc--hhhhhhhcccceE
Confidence 444332 7888877665555
No 35
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.11 E-value=0.00026 Score=57.84 Aligned_cols=85 Identities=25% Similarity=0.239 Sum_probs=47.5
Q ss_pred CCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHHHHHHhCCCCccEEeeeCCCCCCCChHH--
Q 028616 39 CKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKF-- 116 (206)
Q Consensus 39 c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l~~il~~c~~Le~LdL~~C~~v~~~~~~-- 116 (206)
.+.|..|-|+.++|...+ . .|...+|+|+.|.|.+|.|-.-+-..-+..||+|++|.+-++.......+.
T Consensus 63 l~rL~tLll~nNrIt~I~----p----~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~y 134 (233)
T KOG1644|consen 63 LPRLHTLLLNNNRITRID----P----DLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLY 134 (233)
T ss_pred ccccceEEecCCcceeec----c----chhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCchhcccCceeE
Confidence 355666666655442111 1 123344677777777776666665556667777777766665544333332
Q ss_pred HHhcCCCCceeCCCC
Q 028616 117 MKGNFPNLKVLGPFV 131 (206)
Q Consensus 117 l~~~~~~L~~L~~~~ 131 (206)
+..+.|+|+.|.+..
T Consensus 135 vl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 135 VLYKLPSLRTLDFQK 149 (233)
T ss_pred EEEecCcceEeehhh
Confidence 235666777766643
No 36
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=96.87 E-value=0.00056 Score=68.95 Aligned_cols=37 Identities=24% Similarity=0.440 Sum_probs=24.0
Q ss_pred CCCcEEEccCCcCCHHHHHHHHhCCCCccEEeeeCCCCC
Q 028616 72 PKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDV 110 (206)
Q Consensus 72 p~Lk~L~L~~~~it~~~l~~il~~c~~Le~LdL~~C~~v 110 (206)
++|++|+|++|.|+. +-.-+..+++|+.|+|++|.++
T Consensus 846 ~nL~~L~Ls~n~i~~--iP~si~~l~~L~~L~L~~C~~L 882 (1153)
T PLN03210 846 TNISDLNLSRTGIEE--VPWWIEKFSNLSFLDMNGCNNL 882 (1153)
T ss_pred cccCEeECCCCCCcc--ChHHHhcCCCCCEEECCCCCCc
Confidence 466666666666543 2222456788888888888776
No 37
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=96.81 E-value=0.00036 Score=67.60 Aligned_cols=106 Identities=21% Similarity=0.170 Sum_probs=69.0
Q ss_pred CCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHHH--
Q 028616 13 LSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVL-- 90 (206)
Q Consensus 13 ~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l~-- 90 (206)
.+.|+.|.+.+| .+|++.+..+ .+.++||.|+|+.+.++ .--+..+. +++.|++|+|+||+++.-...
T Consensus 358 ~~~Lq~LylanN-~Ltd~c~p~l-~~~~hLKVLhLsyNrL~-------~fpas~~~-kle~LeeL~LSGNkL~~Lp~tva 427 (1081)
T KOG0618|consen 358 HAALQELYLANN-HLTDSCFPVL-VNFKHLKVLHLSYNRLN-------SFPASKLR-KLEELEELNLSGNKLTTLPDTVA 427 (1081)
T ss_pred hHHHHHHHHhcC-cccccchhhh-ccccceeeeeecccccc-------cCCHHHHh-chHHhHHHhcccchhhhhhHHHH
Confidence 456778888886 4799998876 56799999999877553 11123333 788999999999986654321
Q ss_pred ------HH------------HhCCCCccEEeeeCCCCCCCChHHHH-hcC-CCCceeCCCC
Q 028616 91 ------KI------------LSSCALLEFLDLRGCWDVKLDDKFMK-GNF-PNLKVLGPFV 131 (206)
Q Consensus 91 ------~i------------l~~c~~Le~LdL~~C~~v~~~~~~l~-~~~-~~L~~L~~~~ 131 (206)
.+ +...|+|+.+||+.+... .-.+. ..- |+||.|++..
T Consensus 428 ~~~~L~tL~ahsN~l~~fPe~~~l~qL~~lDlS~N~L~---~~~l~~~~p~p~LkyLdlSG 485 (1081)
T KOG0618|consen 428 NLGRLHTLRAHSNQLLSFPELAQLPQLKVLDLSCNNLS---EVTLPEALPSPNLKYLDLSG 485 (1081)
T ss_pred hhhhhHHHhhcCCceeechhhhhcCcceEEecccchhh---hhhhhhhCCCcccceeeccC
Confidence 11 112478899999855432 22222 222 6888887753
No 38
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.76 E-value=0.0014 Score=56.72 Aligned_cols=84 Identities=19% Similarity=0.169 Sum_probs=41.5
Q ss_pred cEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHHHHHHhCC
Q 028616 17 TFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSC 96 (206)
Q Consensus 17 ~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l~~il~~c 96 (206)
+.|.+.+|.--+...+..++..|..++.|.|..+-+ ..-..+.+|.+++|.|+.|||+.|.++.. +..+-.-.
T Consensus 48 ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~i------SdWseI~~ile~lP~l~~LNls~N~L~s~-I~~lp~p~ 120 (418)
T KOG2982|consen 48 ELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLI------SDWSEIGAILEQLPALTTLNLSCNSLSSD-IKSLPLPL 120 (418)
T ss_pred hhheecCCCCCcchhHHHHHHHhhhhhhhhcccchh------ccHHHHHHHHhcCccceEeeccCCcCCCc-cccCcccc
Confidence 344444543223334555666666666666654322 02245555666666666666666654432 11111233
Q ss_pred CCccEEeeeCC
Q 028616 97 ALLEFLDLRGC 107 (206)
Q Consensus 97 ~~Le~LdL~~C 107 (206)
.+|+.|-|+|.
T Consensus 121 ~nl~~lVLNgT 131 (418)
T KOG2982|consen 121 KNLRVLVLNGT 131 (418)
T ss_pred cceEEEEEcCC
Confidence 46666666554
No 39
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=96.71 E-value=0.0012 Score=34.97 Aligned_cols=24 Identities=21% Similarity=0.346 Sum_probs=17.6
Q ss_pred CCCCcEEEccCCcCCHHHHHHHHh
Q 028616 71 MPKLKRLEMAYHVISTEIVLKILS 94 (206)
Q Consensus 71 ~p~Lk~L~L~~~~it~~~l~~il~ 94 (206)
|++|++|+|++|.|++.++.+|++
T Consensus 1 ~~~L~~L~l~~n~i~~~g~~~l~~ 24 (24)
T PF13516_consen 1 NPNLETLDLSNNQITDEGASALAN 24 (24)
T ss_dssp -TT-SEEE-TSSBEHHHHHHHHHH
T ss_pred CCCCCEEEccCCcCCHHHHHHhCC
Confidence 578899999998899988888763
No 40
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=96.70 E-value=0.0014 Score=66.07 Aligned_cols=38 Identities=24% Similarity=0.241 Sum_probs=18.6
Q ss_pred cCCCCcEEEccCCc-CCHHHHHHHHhCCCCccEEeeeCCCCC
Q 028616 70 TMPKLKRLEMAYHV-ISTEIVLKILSSCALLEFLDLRGCWDV 110 (206)
Q Consensus 70 ~~p~Lk~L~L~~~~-it~~~l~~il~~c~~Le~LdL~~C~~v 110 (206)
.+++|++|+|++|. ++.-.. .-++++|+.|+|++|..+
T Consensus 679 ~L~~L~~L~L~~c~~L~~Lp~---~i~l~sL~~L~Lsgc~~L 717 (1153)
T PLN03210 679 YLNKLEDLDMSRCENLEILPT---GINLKSLYRLNLSGCSRL 717 (1153)
T ss_pred ccCCCCEEeCCCCCCcCccCC---cCCCCCCCEEeCCCCCCc
Confidence 45566666666553 222110 014556666666666543
No 41
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=96.69 E-value=0.0011 Score=35.15 Aligned_cols=24 Identities=25% Similarity=0.232 Sum_probs=18.0
Q ss_pred CCCCcEEEeccCCCCCHHHHHHHHh
Q 028616 13 LSAVTFLDLSYCSKIGAPALEAIGK 37 (206)
Q Consensus 13 ~~~L~~L~Ls~c~~it~~~l~~l~~ 37 (206)
|++|+.|+|++|. |++.|+.+|++
T Consensus 1 ~~~L~~L~l~~n~-i~~~g~~~l~~ 24 (24)
T PF13516_consen 1 NPNLETLDLSNNQ-ITDEGASALAN 24 (24)
T ss_dssp -TT-SEEE-TSSB-EHHHHHHHHHH
T ss_pred CCCCCEEEccCCc-CCHHHHHHhCC
Confidence 6889999999975 89999998874
No 42
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.62 E-value=0.00068 Score=64.52 Aligned_cols=94 Identities=16% Similarity=0.175 Sum_probs=49.9
Q ss_pred cCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEe---ecccCCCCCC--------------CCChHHHHHH---HhcC
Q 028616 12 RLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCR---NMHPLDTADK--------------LSQDDEANAI---ASTM 71 (206)
Q Consensus 12 ~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L---~~~~~~~~g~--------------~v~d~~~~~i---a~~~ 71 (206)
.++.|++|.|++|..-+.+|+..|-..+.+|..-+- -.+.+...|- ...-..+.++ .+-+
T Consensus 107 pF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~~mD~SLqll 186 (1096)
T KOG1859|consen 107 PFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLVLMDESLQLL 186 (1096)
T ss_pred cccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHHhHHHHHHHH
Confidence 477899999999976677888766543322211110 0000000000 0000111111 1122
Q ss_pred CCCcEEEccCCcCCHHHHHHHHhCCCCccEEeeeCCC
Q 028616 72 PKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCW 108 (206)
Q Consensus 72 p~Lk~L~L~~~~it~~~l~~il~~c~~Le~LdL~~C~ 108 (206)
|.|++|||+.|++++-. .++.|++|++|||+.+.
T Consensus 187 ~ale~LnLshNk~~~v~---~Lr~l~~LkhLDlsyN~ 220 (1096)
T KOG1859|consen 187 PALESLNLSHNKFTKVD---NLRRLPKLKHLDLSYNC 220 (1096)
T ss_pred HHhhhhccchhhhhhhH---HHHhcccccccccccch
Confidence 77788888888877655 45678888888886544
No 43
>PLN03150 hypothetical protein; Provisional
Probab=96.57 E-value=0.004 Score=59.03 Aligned_cols=85 Identities=15% Similarity=0.186 Sum_probs=48.3
Q ss_pred CCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHHHHHHh
Q 028616 15 AVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILS 94 (206)
Q Consensus 15 ~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l~~il~ 94 (206)
.++.|+|++|. ++..--..+ ..+++|+.|.|+.+.+. |. +. ..+ ..+++|+.|+|++|.++... -..+.
T Consensus 419 ~v~~L~L~~n~-L~g~ip~~i-~~L~~L~~L~Ls~N~l~--g~-iP----~~~-~~l~~L~~LdLs~N~lsg~i-P~~l~ 487 (623)
T PLN03150 419 FIDGLGLDNQG-LRGFIPNDI-SKLRHLQSINLSGNSIR--GN-IP----PSL-GSITSLEVLDLSYNSFNGSI-PESLG 487 (623)
T ss_pred EEEEEECCCCC-ccccCCHHH-hCCCCCCEEECCCCccc--Cc-CC----hHH-hCCCCCCEEECCCCCCCCCC-chHHh
Confidence 36777777763 332222223 34677888887655331 10 11 112 36778888888887765432 22344
Q ss_pred CCCCccEEeeeCCCCC
Q 028616 95 SCALLEFLDLRGCWDV 110 (206)
Q Consensus 95 ~c~~Le~LdL~~C~~v 110 (206)
++++|+.|+|++|...
T Consensus 488 ~L~~L~~L~Ls~N~l~ 503 (623)
T PLN03150 488 QLTSLRILNLNGNSLS 503 (623)
T ss_pred cCCCCCEEECcCCccc
Confidence 6778888888777543
No 44
>PLN03150 hypothetical protein; Provisional
Probab=96.43 E-value=0.0055 Score=58.07 Aligned_cols=88 Identities=13% Similarity=0.102 Sum_probs=38.1
Q ss_pred cCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHHHH
Q 028616 12 RLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLK 91 (206)
Q Consensus 12 ~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l~~ 91 (206)
.+++|+.|+|++|. ++. .+......+++|+.|+|+.+.+. |. +. ..+. ++++|++|+|++|.++...=..
T Consensus 440 ~L~~L~~L~Ls~N~-l~g-~iP~~~~~l~~L~~LdLs~N~ls--g~-iP----~~l~-~L~~L~~L~Ls~N~l~g~iP~~ 509 (623)
T PLN03150 440 KLRHLQSINLSGNS-IRG-NIPPSLGSITSLEVLDLSYNSFN--GS-IP----ESLG-QLTSLRILNLNGNSLSGRVPAA 509 (623)
T ss_pred CCCCCCEEECCCCc-ccC-cCChHHhCCCCCCEEECCCCCCC--CC-Cc----hHHh-cCCCCCEEECcCCcccccCChH
Confidence 45566666666553 221 11112234556666666544321 10 00 1122 5566666666666544322122
Q ss_pred HHhCCCCccEEeeeCCCC
Q 028616 92 ILSSCALLEFLDLRGCWD 109 (206)
Q Consensus 92 il~~c~~Le~LdL~~C~~ 109 (206)
+.....++..+++.++..
T Consensus 510 l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 510 LGGRLLHRASFNFTDNAG 527 (623)
T ss_pred HhhccccCceEEecCCcc
Confidence 222233445555555443
No 45
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.37 E-value=0.0013 Score=53.72 Aligned_cols=91 Identities=18% Similarity=0.164 Sum_probs=66.0
Q ss_pred HhcCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHH
Q 028616 10 AGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIV 89 (206)
Q Consensus 10 ~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l 89 (206)
..+.+.|..|.|++| .||.-. ..|.+..|+|+.|.|.++++. .-..+.-+| .||+|+.|.+-+|.++...=
T Consensus 60 lp~l~rL~tLll~nN-rIt~I~-p~L~~~~p~l~~L~LtnNsi~------~l~dl~pLa-~~p~L~~Ltll~Npv~~k~~ 130 (233)
T KOG1644|consen 60 LPHLPRLHTLLLNNN-RITRID-PDLDTFLPNLKTLILTNNSIQ------ELGDLDPLA-SCPKLEYLTLLGNPVEHKKN 130 (233)
T ss_pred CCCccccceEEecCC-cceeec-cchhhhccccceEEecCcchh------hhhhcchhc-cCCccceeeecCCchhcccC
Confidence 346889999999886 576433 246666799999999766441 122344455 89999999999999887652
Q ss_pred --HHHHhCCCCccEEeeeCCCC
Q 028616 90 --LKILSSCALLEFLDLRGCWD 109 (206)
Q Consensus 90 --~~il~~c~~Le~LdL~~C~~ 109 (206)
..++-.+|+|+.||+.+-..
T Consensus 131 YR~yvl~klp~l~~LDF~kVt~ 152 (233)
T KOG1644|consen 131 YRLYVLYKLPSLRTLDFQKVTR 152 (233)
T ss_pred ceeEEEEecCcceEeehhhhhH
Confidence 34566789999999987443
No 46
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.24 E-value=0.0017 Score=55.74 Aligned_cols=85 Identities=24% Similarity=0.322 Sum_probs=60.6
Q ss_pred HHHhcCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCc-CCH
Q 028616 8 QIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHV-IST 86 (206)
Q Consensus 8 ~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~-it~ 86 (206)
.|.++.|.|++|.||-| +|+ .+..+ +.|++|+.|-|..+.|. .-+.+..+ +++|+|+.|=|.-|. ...
T Consensus 35 sic~kMp~lEVLsLSvN-kIs--sL~pl-~rCtrLkElYLRkN~I~------sldEL~YL-knlpsLr~LWL~ENPCc~~ 103 (388)
T KOG2123|consen 35 SICEKMPLLEVLSLSVN-KIS--SLAPL-QRCTRLKELYLRKNCIE------SLDELEYL-KNLPSLRTLWLDENPCCGE 103 (388)
T ss_pred HHHHhcccceeEEeecc-ccc--cchhH-HHHHHHHHHHHHhcccc------cHHHHHHH-hcCchhhhHhhccCCcccc
Confidence 46788999999999986 565 55555 46899999988655321 23444444 599999999998876 222
Q ss_pred ---HHHHHHHhCCCCccEEe
Q 028616 87 ---EIVLKILSSCALLEFLD 103 (206)
Q Consensus 87 ---~~l~~il~~c~~Le~Ld 103 (206)
.-=..++.-+|+|++||
T Consensus 104 ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 104 AGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred cchhHHHHHHHHcccchhcc
Confidence 22356788899999985
No 47
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=96.07 E-value=0.00064 Score=63.97 Aligned_cols=57 Identities=21% Similarity=0.152 Sum_probs=40.4
Q ss_pred cCCCCcEEEccCCcCCHHHHHHHHhCCCCccEEeeeCCCCCCCChHHHHhcCCCCceeCCC
Q 028616 70 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPF 130 (206)
Q Consensus 70 ~~p~Lk~L~L~~~~it~~~l~~il~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~~ 130 (206)
++++|++|||++|+||.-.+. ..-..+|+.|+|+.+..+.+.+.. .+.++|++|...
T Consensus 243 ~l~~LrrLNLS~N~iteL~~~--~~~W~~lEtLNlSrNQLt~LP~av--cKL~kL~kLy~n 299 (1255)
T KOG0444|consen 243 KLRNLRRLNLSGNKITELNMT--EGEWENLETLNLSRNQLTVLPDAV--CKLTKLTKLYAN 299 (1255)
T ss_pred hhhhhheeccCcCceeeeecc--HHHHhhhhhhccccchhccchHHH--hhhHHHHHHHhc
Confidence 558999999999998875432 234689999999998877555433 345666666553
No 48
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=95.88 E-value=0.01 Score=32.81 Aligned_cols=25 Identities=16% Similarity=0.331 Sum_probs=20.3
Q ss_pred CCCcEEEccCCcCCHHHHHHHHhCC
Q 028616 72 PKLKRLEMAYHVISTEIVLKILSSC 96 (206)
Q Consensus 72 p~Lk~L~L~~~~it~~~l~~il~~c 96 (206)
++|++|+|++|.|++.|+.++.+.+
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L~~~L 26 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARALAEAL 26 (28)
T ss_pred CccCEEECCCCCCCHHHHHHHHHHh
Confidence 5788888888888888888887654
No 49
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=95.85 E-value=0.0065 Score=37.29 Aligned_cols=16 Identities=31% Similarity=0.619 Sum_probs=10.0
Q ss_pred cCCCCcEEEccCCcCC
Q 028616 70 TMPKLKRLEMAYHVIS 85 (206)
Q Consensus 70 ~~p~Lk~L~L~~~~it 85 (206)
+||+|+.|+|++|+|+
T Consensus 22 ~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 22 NLPNLETLNLSNNPIS 37 (44)
T ss_dssp TCTTSSEEEETSSCCS
T ss_pred CCCCCCEEEecCCCCC
Confidence 5666666666666655
No 50
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=95.78 E-value=0.0072 Score=52.52 Aligned_cols=54 Identities=30% Similarity=0.292 Sum_probs=37.3
Q ss_pred CCCCcEEEccCCcCCHHHHHHHHhCCCCccEEeeeCCCCCCCChHHHHhcCCCCceeCC
Q 028616 71 MPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP 129 (206)
Q Consensus 71 ~p~Lk~L~L~~~~it~~~l~~il~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~ 129 (206)
.|+++.|++++|.|+..+= ++.+++|..|||+++..... .....+.-++|+|.+
T Consensus 306 ~Pkir~L~lS~N~i~~v~n---La~L~~L~~LDLS~N~Ls~~--~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 306 APKLRRLILSQNRIRTVQN---LAELPQLQLLDLSGNLLAEC--VGWHLKLGNIKTLKL 359 (490)
T ss_pred ccceeEEeccccceeeehh---hhhcccceEeecccchhHhh--hhhHhhhcCEeeeeh
Confidence 3999999999998765433 55789999999998775522 223344455555555
No 51
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=95.75 E-value=0.016 Score=53.62 Aligned_cols=96 Identities=26% Similarity=0.294 Sum_probs=60.8
Q ss_pred HHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCC--cCCHHHHHHHHhCCCCccEEeeeCC
Q 028616 30 PALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYH--VISTEIVLKILSSCALLEFLDLRGC 107 (206)
Q Consensus 30 ~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~--~it~~~l~~il~~c~~Le~LdL~~C 107 (206)
.++.++....|.+.+|+|+.+++ -.-+++..|+...|+|+.|+|++| .+....=..=+ +...|+.|-+.|+
T Consensus 208 ~~L~~~~~n~p~i~sl~lsnNrL------~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~-k~l~Leel~l~GN 280 (585)
T KOG3763|consen 208 AVLKHIEENFPEILSLSLSNNRL------YHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKL-KGLPLEELVLEGN 280 (585)
T ss_pred HHHHHhhcCCcceeeeecccchh------hchhhhhHHHHhcchhheeecccchhhhcchhhhhhh-cCCCHHHeeecCC
Confidence 45567777778888888876643 234566667778888888888888 33333221111 4567888888887
Q ss_pred CCCC-CChH-----HHHhcCCCCceeCCCCc
Q 028616 108 WDVK-LDDK-----FMKGNFPNLKVLGPFVM 132 (206)
Q Consensus 108 ~~v~-~~~~-----~l~~~~~~L~~L~~~~~ 132 (206)
+..+ ..+. .+++.||+|..|.....
T Consensus 281 Plc~tf~~~s~yv~~i~~~FPKL~~LDG~ev 311 (585)
T KOG3763|consen 281 PLCTTFSDRSEYVSAIRELFPKLLRLDGVEV 311 (585)
T ss_pred ccccchhhhHHHHHHHHHhcchheeecCccc
Confidence 6552 1111 24578888888887543
No 52
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=95.51 E-value=0.02 Score=31.59 Aligned_cols=25 Identities=28% Similarity=0.361 Sum_probs=19.8
Q ss_pred CCCcEEEeccCCCCCHHHHHHHHhcC
Q 028616 14 SAVTFLDLSYCSKIGAPALEAIGKHC 39 (206)
Q Consensus 14 ~~L~~L~Ls~c~~it~~~l~~l~~~c 39 (206)
++|++|+|++| .|++.|..+|++..
T Consensus 2 ~~L~~LdL~~N-~i~~~G~~~L~~~L 26 (28)
T smart00368 2 PSLRELDLSNN-KLGDEGARALAEAL 26 (28)
T ss_pred CccCEEECCCC-CCCHHHHHHHHHHh
Confidence 67888999887 47888888887654
No 53
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=95.45 E-value=0.011 Score=51.45 Aligned_cols=35 Identities=17% Similarity=-0.055 Sum_probs=23.9
Q ss_pred cCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecc
Q 028616 12 RLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMH 50 (206)
Q Consensus 12 ~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~ 50 (206)
-.|.+++|+||+|.-.+-..+. +.++|+.|.|+.+
T Consensus 305 L~Pkir~L~lS~N~i~~v~nLa----~L~~L~~LDLS~N 339 (490)
T KOG1259|consen 305 LAPKLRRLILSQNRIRTVQNLA----ELPQLQLLDLSGN 339 (490)
T ss_pred hccceeEEeccccceeeehhhh----hcccceEeecccc
Confidence 3788899999987533333333 3488888888755
No 54
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=95.39 E-value=0.034 Score=48.58 Aligned_cols=96 Identities=20% Similarity=0.158 Sum_probs=69.5
Q ss_pred HHHHHHHHhcCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHH---hcCCCCcEEEc
Q 028616 3 DSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIA---STMPKLKRLEM 79 (206)
Q Consensus 3 d~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia---~~~p~Lk~L~L 79 (206)
++.+..+-..=|+|+..+|++...|+...+..+....++=+....- ..+++..++..+.++| +.++.|+.|++
T Consensus 187 e~~leri~~nd~~l~evnlnn~~~ip~e~lk~~~eal~~nt~vk~F----sla~tr~~d~vA~a~a~ml~~n~sl~slnv 262 (353)
T KOG3735|consen 187 ESSLERIKENDTGLTEVNLNNIRRIPIETLKQFSEALKNNTHVKKF----SLANTRSSDPVAFAIAEMLKENKSLTSLNV 262 (353)
T ss_pred HHHHHHHhcCCCCceeeeccccccCCHHHHHHHHHHHhcCchhhhh----hhhcccCCchhHHHHHHHHhhcchhhheec
Confidence 4556667777899999999998889988888777666554444321 1122334455555554 56799999999
Q ss_pred cCCcCCHHHHHHHHhCCCCccEE
Q 028616 80 AYHVISTEIVLKILSSCALLEFL 102 (206)
Q Consensus 80 ~~~~it~~~l~~il~~c~~Le~L 102 (206)
.+|.||..++.+++..++.=++|
T Consensus 263 esnFItg~gi~a~~~al~~n~tl 285 (353)
T KOG3735|consen 263 ESNFITGLGIMALLRALQSNKSL 285 (353)
T ss_pred cccccccHHHHHHHHHHhccchh
Confidence 99999999999999887655555
No 55
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=95.25 E-value=0.0084 Score=58.20 Aligned_cols=33 Identities=12% Similarity=-0.111 Sum_probs=17.6
Q ss_pred CCCcEEEccCCcCCHHHHHHHHhCCCCccEEeeeCCCC
Q 028616 72 PKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWD 109 (206)
Q Consensus 72 p~Lk~L~L~~~~it~~~l~~il~~c~~Le~LdL~~C~~ 109 (206)
++|+.|+|++|+|+.- -...++|+.|+|++|..
T Consensus 282 ~~L~~L~Ls~N~Lt~L-----P~~p~~L~~LdLS~N~L 314 (788)
T PRK15387 282 SGLCKLWIFGNQLTSL-----PVLPPGLQELSVSDNQL 314 (788)
T ss_pred hhcCEEECcCCccccc-----cccccccceeECCCCcc
Confidence 4555566666554421 11235677777766643
No 56
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=95.20 E-value=0.012 Score=57.86 Aligned_cols=36 Identities=19% Similarity=-0.060 Sum_probs=15.1
Q ss_pred CCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEee
Q 028616 13 LSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRN 48 (206)
Q Consensus 13 ~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~ 48 (206)
||.|++|-+..+..--...-..+.++.|.|+.|.|+
T Consensus 544 ~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs 579 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLS 579 (889)
T ss_pred CCccceEEEeecchhhhhcCHHHHhhCcceEEEECC
Confidence 555555555554210011111223344555555555
No 57
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=95.06 E-value=0.035 Score=51.41 Aligned_cols=92 Identities=20% Similarity=0.138 Sum_probs=69.4
Q ss_pred HHHHHHhcCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCC-ChHHHHHHHhcCCCCcEEEccCCc
Q 028616 5 IVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLS-QDDEANAIASTMPKLKRLEMAYHV 83 (206)
Q Consensus 5 ~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v-~d~~~~~ia~~~p~Lk~L~L~~~~ 83 (206)
.+..+..+.|.+..|+|++|....-.++.+|++..|+|+.|+|+.+.. .+ +...+..+ +...|++|-|.||.
T Consensus 209 ~L~~~~~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~-----~~~~~~el~K~--k~l~Leel~l~GNP 281 (585)
T KOG3763|consen 209 VLKHIEENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHS-----KISSESELDKL--KGLPLEELVLEGNP 281 (585)
T ss_pred HHHHhhcCCcceeeeecccchhhchhhhhHHHHhcchhheeecccchh-----hhcchhhhhhh--cCCCHHHeeecCCc
Confidence 345667789999999999998777889999999999999999985511 11 12222222 56789999999997
Q ss_pred CCH------HHHHHHHhCCCCccEEe
Q 028616 84 IST------EIVLKILSSCALLEFLD 103 (206)
Q Consensus 84 it~------~~l~~il~~c~~Le~Ld 103 (206)
|.. .-+.+|.+.+|+|..||
T Consensus 282 lc~tf~~~s~yv~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 282 LCTTFSDRSEYVSAIRELFPKLLRLD 307 (585)
T ss_pred cccchhhhHHHHHHHHHhcchheeec
Confidence 433 33678888999999885
No 58
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=94.96 E-value=0.0059 Score=47.42 Aligned_cols=95 Identities=23% Similarity=0.183 Sum_probs=58.3
Q ss_pred HHHHHHhcC---CCCcEEEeccCCCC-CHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEcc
Q 028616 5 IVAQIAGRL---SAVTFLDLSYCSKI-GAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMA 80 (206)
Q Consensus 5 ~l~~l~~~~---~~L~~L~Ls~c~~i-t~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~ 80 (206)
++..+.++| ..+..|+|+.|... -..++..+.+ -..|+...|+.+.+. .+ ...+...+|.++.|||+
T Consensus 15 gV~evVercedakE~h~ldLssc~lm~i~davy~l~~-~~el~~i~ls~N~fk----~f----p~kft~kf~t~t~lNl~ 85 (177)
T KOG4579|consen 15 GVNEVVERCEDAKELHFLDLSSCQLMYIADAVYMLSK-GYELTKISLSDNGFK----KF----PKKFTIKFPTATTLNLA 85 (177)
T ss_pred hHHHHHHhhHHHHHhhhcccccchhhHHHHHHHHHhC-CceEEEEecccchhh----hC----CHHHhhccchhhhhhcc
Confidence 444555554 35778888888543 2344444433 356777777654331 11 11344466778888888
Q ss_pred CCcCCHHHHHHHHhCCCCccEEeeeCCCCC
Q 028616 81 YHVISTEIVLKILSSCALLEFLDLRGCWDV 110 (206)
Q Consensus 81 ~~~it~~~l~~il~~c~~Le~LdL~~C~~v 110 (206)
.|.|++--.. +..+|.|+.|+++.+...
T Consensus 86 ~neisdvPeE--~Aam~aLr~lNl~~N~l~ 113 (177)
T KOG4579|consen 86 NNEISDVPEE--LAAMPALRSLNLRFNPLN 113 (177)
T ss_pred hhhhhhchHH--HhhhHHhhhcccccCccc
Confidence 8877776655 457888888888887755
No 59
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=94.73 E-value=0.0022 Score=51.66 Aligned_cols=78 Identities=29% Similarity=0.342 Sum_probs=47.8
Q ss_pred CCCCcEEEeccCCCCCH--HHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCc--CCHHH
Q 028616 13 LSAVTFLDLSYCSKIGA--PALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHV--ISTEI 88 (206)
Q Consensus 13 ~~~L~~L~Ls~c~~it~--~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~--it~~~ 88 (206)
..+++.|.||++ ++|- -++.. .++|+.|+++++.+ .+-...|. ++|+||+|+++-|+ +...|
T Consensus 32 ~s~ITrLtLSHN-Kl~~vppnia~----l~nlevln~~nnqi--------e~lp~~is-sl~klr~lnvgmnrl~~lprg 97 (264)
T KOG0617|consen 32 MSNITRLTLSHN-KLTVVPPNIAE----LKNLEVLNLSNNQI--------EELPTSIS-SLPKLRILNVGMNRLNILPRG 97 (264)
T ss_pred hhhhhhhhcccC-ceeecCCcHHH----hhhhhhhhcccchh--------hhcChhhh-hchhhhheecchhhhhcCccc
Confidence 456677777775 4442 22222 36788888865422 11122233 78899999998776 44444
Q ss_pred HHHHHhCCCCccEEeeeCCC
Q 028616 89 VLKILSSCALLEFLDLRGCW 108 (206)
Q Consensus 89 l~~il~~c~~Le~LdL~~C~ 108 (206)
+ -++|-|+.|||+.+.
T Consensus 98 f----gs~p~levldltynn 113 (264)
T KOG0617|consen 98 F----GSFPALEVLDLTYNN 113 (264)
T ss_pred c----CCCchhhhhhccccc
Confidence 4 357888999887754
No 60
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.58 E-value=0.0078 Score=55.34 Aligned_cols=90 Identities=20% Similarity=0.176 Sum_probs=40.8
Q ss_pred CCCCcEEEeccCCCCCHHHHHHHHhcCCCC----ceEEeecccCCCCCCCCChHHHHHHHhc---CCCCcEEEccCCcCC
Q 028616 13 LSAVTFLDLSYCSKIGAPALEAIGKHCKLL----VVLCRNMHPLDTADKLSQDDEANAIAST---MPKLKRLEMAYHVIS 85 (206)
Q Consensus 13 ~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L----~~L~L~~~~~~~~g~~v~d~~~~~ia~~---~p~Lk~L~L~~~~it 85 (206)
+++|+.|++++|+ +++.++..+....+.. +.|.+.. +.++..++..|+.. .+.|+.++++-|.+.
T Consensus 114 ~~~L~~L~l~~n~-l~~~g~~~l~~~l~~~~~~l~~L~l~~-------c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~ 185 (478)
T KOG4308|consen 114 LPTLGQLDLSGNN-LGDEGARLLCEGLRLPQCLLQTLELVS-------CSLTSEGAAPLAAVLEKNEHLTELDLSLNGLI 185 (478)
T ss_pred cccHhHhhcccCC-CccHhHHHHHhhcccchHHHHHHHhhc-------ccccccchHHHHHHHhcccchhHHHHHhcccc
Confidence 5555666666653 4555555555444332 2222221 23344444443322 344555555555544
Q ss_pred HHHHHHHHhCC-------CCccEEeeeCCCCC
Q 028616 86 TEIVLKILSSC-------ALLEFLDLRGCWDV 110 (206)
Q Consensus 86 ~~~l~~il~~c-------~~Le~LdL~~C~~v 110 (206)
..++..+.+.. .+++.|.+++|...
T Consensus 186 ~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t 217 (478)
T KOG4308|consen 186 ELGLLVLSQALESAASPLSSLETLKLSRCGVT 217 (478)
T ss_pred hhhhHHHhhhhhhhhcccccHHHHhhhhcCcC
Confidence 44444333332 23555555555543
No 61
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=94.17 E-value=0.0052 Score=58.73 Aligned_cols=96 Identities=21% Similarity=0.123 Sum_probs=61.8
Q ss_pred hcCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCC------CCC-----CCChHHHHHH--HhcCCCCcEE
Q 028616 11 GRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDT------ADK-----LSQDDEANAI--ASTMPKLKRL 77 (206)
Q Consensus 11 ~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~------~g~-----~v~d~~~~~i--a~~~p~Lk~L 77 (206)
+-+|.|++|||++| +++.-. ..+.|++|+.|.|+.+.+.. .|+ .++...+..+ ..++.+|++|
T Consensus 184 qll~ale~LnLshN-k~~~v~---~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l~tL~gie~LksL~~L 259 (1096)
T KOG1859|consen 184 QLLPALESLNLSHN-KFTKVD---NLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNALTTLRGIENLKSLYGL 259 (1096)
T ss_pred HHHHHhhhhccchh-hhhhhH---HHHhcccccccccccchhccccccchhhhhheeeeecccHHHhhhhHHhhhhhhcc
Confidence 34788999999996 555433 33567889999997655321 111 1222222222 1367888888
Q ss_pred EccCCcCCHHHHHHHHhCCCCccEEeeeCCCCC
Q 028616 78 EMAYHVISTEIVLKILSSCALLEFLDLRGCWDV 110 (206)
Q Consensus 78 ~L~~~~it~~~l~~il~~c~~Le~LdL~~C~~v 110 (206)
+|++|-|..-.-...+-.+..|+.|.|.|++.-
T Consensus 260 DlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 260 DLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred chhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 888887777666666666777888888877643
No 62
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=94.08 E-value=0.037 Score=54.60 Aligned_cols=42 Identities=21% Similarity=0.061 Sum_probs=27.0
Q ss_pred HHhcCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccC
Q 028616 9 IAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPL 52 (206)
Q Consensus 9 l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~ 52 (206)
+..++|.|++|+|++|..++ -++.-...+-+||.|+++...+
T Consensus 566 ff~~m~~LrVLDLs~~~~l~--~LP~~I~~Li~LryL~L~~t~I 607 (889)
T KOG4658|consen 566 FFRSLPLLRVLDLSGNSSLS--KLPSSIGELVHLRYLDLSDTGI 607 (889)
T ss_pred HHhhCcceEEEECCCCCccC--cCChHHhhhhhhhcccccCCCc
Confidence 35579999999999986654 2222222235688887765543
No 63
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=94.03 E-value=0.025 Score=50.67 Aligned_cols=87 Identities=22% Similarity=0.131 Sum_probs=52.0
Q ss_pred HhcCCCCcEEEeccCCCCC---HHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCH
Q 028616 10 AGRLSAVTFLDLSYCSKIG---APALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVIST 86 (206)
Q Consensus 10 ~~~~~~L~~L~Ls~c~~it---~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~ 86 (206)
..++|+|+.|+|++| +|| +.+++.. ..|+.|.|..+.+. .|. ..+...+.+|+.|+|.+|+||.
T Consensus 270 f~~L~~L~~lnlsnN-~i~~i~~~aFe~~----a~l~eL~L~~N~l~----~v~----~~~f~~ls~L~tL~L~~N~it~ 336 (498)
T KOG4237|consen 270 FKKLPNLRKLNLSNN-KITRIEDGAFEGA----AELQELYLTRNKLE----FVS----SGMFQGLSGLKTLSLYDNQITT 336 (498)
T ss_pred HhhcccceEeccCCC-ccchhhhhhhcch----hhhhhhhcCcchHH----HHH----HHhhhccccceeeeecCCeeEE
Confidence 456788888888876 344 3444444 34777766544321 111 1123467888889999888776
Q ss_pred HHHHHHHhCCCCccEEeeeCCCCC
Q 028616 87 EIVLKILSSCALLEFLDLRGCWDV 110 (206)
Q Consensus 87 ~~l~~il~~c~~Le~LdL~~C~~v 110 (206)
-+=.+ .+....|..|.|-.++..
T Consensus 337 ~~~~a-F~~~~~l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 337 VAPGA-FQTLFSLSTLNLLSNPFN 359 (498)
T ss_pred Eeccc-ccccceeeeeehccCccc
Confidence 53322 234567777777666554
No 64
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=93.95 E-value=0.0042 Score=50.04 Aligned_cols=91 Identities=21% Similarity=0.268 Sum_probs=56.5
Q ss_pred cCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHH---
Q 028616 12 RLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEI--- 88 (206)
Q Consensus 12 ~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~--- 88 (206)
.+.+|+.|+++++ .|+. +..-....|+||.|+++++++..- ..| ..++|-|+.|+|.+|+++...
T Consensus 54 ~l~nlevln~~nn-qie~--lp~~issl~klr~lnvgmnrl~~l-----prg----fgs~p~levldltynnl~e~~lpg 121 (264)
T KOG0617|consen 54 ELKNLEVLNLSNN-QIEE--LPTSISSLPKLRILNVGMNRLNIL-----PRG----FGSFPALEVLDLTYNNLNENSLPG 121 (264)
T ss_pred Hhhhhhhhhcccc-hhhh--cChhhhhchhhhheecchhhhhcC-----ccc----cCCCchhhhhhccccccccccCCc
Confidence 4789999999986 4543 222334468899999988765321 111 125577777777766544432
Q ss_pred -------HHHH-------------HhCCCCccEEeeeCCCCCCCCh
Q 028616 89 -------VLKI-------------LSSCALLEFLDLRGCWDVKLDD 114 (206)
Q Consensus 89 -------l~~i-------------l~~c~~Le~LdL~~C~~v~~~~ 114 (206)
+.++ +..+++|+.|.++.+..+.+..
T Consensus 122 nff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpk 167 (264)
T KOG0617|consen 122 NFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPK 167 (264)
T ss_pred chhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcH
Confidence 2222 2236788999999888775443
No 65
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=93.78 E-value=0.074 Score=47.98 Aligned_cols=97 Identities=21% Similarity=0.216 Sum_probs=60.1
Q ss_pred HHHhcCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCC----------------CCCChHHHHHHHhcC
Q 028616 8 QIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTAD----------------KLSQDDEANAIASTM 71 (206)
Q Consensus 8 ~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g----------------~~v~d~~~~~ia~~~ 71 (206)
.+.+.+++|..|+|+++. +.+--.+ ++ ....|+.|+++.+++..-- ..+..-.+.-+ ..|
T Consensus 429 ~~l~~l~kLt~L~L~NN~-Ln~LP~e-~~-~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~~l-~nm 504 (565)
T KOG0472|consen 429 LELSQLQKLTFLDLSNNL-LNDLPEE-MG-SLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPSGL-KNM 504 (565)
T ss_pred HHHHhhhcceeeecccch-hhhcchh-hh-hhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChHHh-hhh
Confidence 455678999999999873 3322211 11 1245999999876553210 01111111112 367
Q ss_pred CCCcEEEccCCcCCHHHHHHHHhCCCCccEEeeeCCCCC
Q 028616 72 PKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDV 110 (206)
Q Consensus 72 p~Lk~L~L~~~~it~~~l~~il~~c~~Le~LdL~~C~~v 110 (206)
.+|+.|+|..|.+- .+-.++.+|.+|++|+|.|+..-
T Consensus 505 ~nL~tLDL~nNdlq--~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 505 RNLTTLDLQNNDLQ--QIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred hhcceeccCCCchh--hCChhhccccceeEEEecCCccC
Confidence 89999999888642 24456789999999999998765
No 66
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=93.39 E-value=0.025 Score=50.76 Aligned_cols=87 Identities=25% Similarity=0.277 Sum_probs=45.5
Q ss_pred cCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHHHH
Q 028616 12 RLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLK 91 (206)
Q Consensus 12 ~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l~~ 91 (206)
.+++|++|+|+++.-.+-.++..+ +.|+.|.+..+.+... ..+ ..+++|+.+++++|+++.-.-..
T Consensus 116 ~~~~L~~L~ls~N~I~~i~~l~~l----~~L~~L~l~~N~i~~~---------~~~-~~l~~L~~l~l~~n~i~~ie~~~ 181 (414)
T KOG0531|consen 116 SLVNLQVLDLSFNKITKLEGLSTL----TLLKELNLSGNLISDI---------SGL-ESLKSLKLLDLSYNRIVDIENDE 181 (414)
T ss_pred hhhcchheeccccccccccchhhc----cchhhheeccCcchhc---------cCC-ccchhhhcccCCcchhhhhhhhh
Confidence 456666666666432222333333 3366665554433110 000 12677777777777765544322
Q ss_pred HHhCCCCccEEeeeCCCCCCCC
Q 028616 92 ILSSCALLEFLDLRGCWDVKLD 113 (206)
Q Consensus 92 il~~c~~Le~LdL~~C~~v~~~ 113 (206)
+..++.|+.|.+.++......
T Consensus 182 -~~~~~~l~~l~l~~n~i~~i~ 202 (414)
T KOG0531|consen 182 -LSELISLEELDLGGNSIREIE 202 (414)
T ss_pred -hhhccchHHHhccCCchhccc
Confidence 466777777777776655333
No 67
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=93.32 E-value=0.012 Score=55.67 Aligned_cols=16 Identities=25% Similarity=0.370 Sum_probs=9.6
Q ss_pred hcCCCCceEEeecccC
Q 028616 37 KHCKLLVVLCRNMHPL 52 (206)
Q Consensus 37 ~~c~~L~~L~L~~~~~ 52 (206)
+.+.+|+.|.|+.+++
T Consensus 170 RRL~~LqtL~Ls~NPL 185 (1255)
T KOG0444|consen 170 RRLSMLQTLKLSNNPL 185 (1255)
T ss_pred HHHhhhhhhhcCCChh
Confidence 3445667777766554
No 68
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.23 E-value=0.029 Score=51.66 Aligned_cols=52 Identities=23% Similarity=0.257 Sum_probs=29.8
Q ss_pred CChHHHHHHHhcC----CCCcEEEccCCcCCHHHHH---HHHhCCCCccEEeeeCCCCC
Q 028616 59 SQDDEANAIASTM----PKLKRLEMAYHVISTEIVL---KILSSCALLEFLDLRGCWDV 110 (206)
Q Consensus 59 v~d~~~~~ia~~~----p~Lk~L~L~~~~it~~~l~---~il~~c~~Le~LdL~~C~~v 110 (206)
+.+.++..+...+ ++|+++.++.|.|+..+.. ..+..|++++.|.++.+...
T Consensus 245 l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 245 LGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred cchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 3445555555443 3446777777766665543 44455667777766665544
No 69
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=92.68 E-value=0.028 Score=50.46 Aligned_cols=87 Identities=25% Similarity=0.267 Sum_probs=49.4
Q ss_pred cCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHHHH
Q 028616 12 RLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLK 91 (206)
Q Consensus 12 ~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l~~ 91 (206)
.+++|+.|++..+. |. .+..+..+|++|+.|.|+.+.|. . ...+. .++.|+.|++++|.|+...-
T Consensus 93 ~~~~l~~l~l~~n~-i~--~i~~~l~~~~~L~~L~ls~N~I~-------~--i~~l~-~l~~L~~L~l~~N~i~~~~~-- 157 (414)
T KOG0531|consen 93 KLKSLEALDLYDNK-IE--KIENLLSSLVNLQVLDLSFNKIT-------K--LEGLS-TLTLLKELNLSGNLISDISG-- 157 (414)
T ss_pred cccceeeeeccccc-hh--hcccchhhhhcchheeccccccc-------c--ccchh-hccchhhheeccCcchhccC--
Confidence 46677777776652 32 33332345677777777755431 1 11122 44557778888777665432
Q ss_pred HHhCCCCccEEeeeCCCCCCCCh
Q 028616 92 ILSSCALLEFLDLRGCWDVKLDD 114 (206)
Q Consensus 92 il~~c~~Le~LdL~~C~~v~~~~ 114 (206)
+..++.|+.|+++++.......
T Consensus 158 -~~~l~~L~~l~l~~n~i~~ie~ 179 (414)
T KOG0531|consen 158 -LESLKSLKLLDLSYNRIVDIEN 179 (414)
T ss_pred -CccchhhhcccCCcchhhhhhh
Confidence 1236777777777777653333
No 70
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=92.64 E-value=0.09 Score=51.20 Aligned_cols=12 Identities=25% Similarity=-0.139 Sum_probs=6.5
Q ss_pred CCccEEeeeCCC
Q 028616 97 ALLEFLDLRGCW 108 (206)
Q Consensus 97 ~~Le~LdL~~C~ 108 (206)
++|+.|+|++|.
T Consensus 282 ~~L~~L~Ls~N~ 293 (788)
T PRK15387 282 SGLCKLWIFGNQ 293 (788)
T ss_pred hhcCEEECcCCc
Confidence 445555665554
No 71
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=92.17 E-value=0.056 Score=42.06 Aligned_cols=90 Identities=18% Similarity=0.174 Sum_probs=57.3
Q ss_pred hcCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHHH
Q 028616 11 GRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVL 90 (206)
Q Consensus 11 ~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l~ 90 (206)
.+..+|+.++|++|.. .+--+.+....|.++.|+|..+.+ ++- -..+| ++|.||.||++.|.+... .+
T Consensus 50 ~~~~el~~i~ls~N~f--k~fp~kft~kf~t~t~lNl~~nei-------sdv-PeE~A-am~aLr~lNl~~N~l~~~-p~ 117 (177)
T KOG4579|consen 50 SKGYELTKISLSDNGF--KKFPKKFTIKFPTATTLNLANNEI-------SDV-PEELA-AMPALRSLNLRFNPLNAE-PR 117 (177)
T ss_pred hCCceEEEEecccchh--hhCCHHHhhccchhhhhhcchhhh-------hhc-hHHHh-hhHHhhhcccccCccccc-hH
Confidence 3567788888888631 122235555567889998875533 221 12244 889999999999986554 34
Q ss_pred HHHhCCCCccEEeeeCCCCCCCC
Q 028616 91 KILSSCALLEFLDLRGCWDVKLD 113 (206)
Q Consensus 91 ~il~~c~~Le~LdL~~C~~v~~~ 113 (206)
.|+. +.+|-.|+..+.-...++
T Consensus 118 vi~~-L~~l~~Lds~~na~~eid 139 (177)
T KOG4579|consen 118 VIAP-LIKLDMLDSPENARAEID 139 (177)
T ss_pred HHHH-HHhHHHhcCCCCccccCc
Confidence 4444 777888877766554333
No 72
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=90.83 E-value=0.18 Score=24.48 Aligned_cols=12 Identities=17% Similarity=0.515 Sum_probs=4.9
Q ss_pred CCcEEEccCCcC
Q 028616 73 KLKRLEMAYHVI 84 (206)
Q Consensus 73 ~Lk~L~L~~~~i 84 (206)
+|+.|+|++|++
T Consensus 2 ~L~~L~l~~n~L 13 (17)
T PF13504_consen 2 NLRTLDLSNNRL 13 (17)
T ss_dssp T-SEEEETSS--
T ss_pred ccCEEECCCCCC
Confidence 455555555544
No 73
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=88.68 E-value=0.26 Score=43.52 Aligned_cols=60 Identities=25% Similarity=0.238 Sum_probs=29.0
Q ss_pred CCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCH
Q 028616 15 AVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVIST 86 (206)
Q Consensus 15 ~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~ 86 (206)
+|+.|+++.+. +. .+..-...+++|+.|.++.+.+ .+ +.......++|+.|.+++|+++.
T Consensus 141 nL~~L~l~~N~-i~--~l~~~~~~l~~L~~L~l~~N~l-------~~--l~~~~~~~~~L~~L~ls~N~i~~ 200 (394)
T COG4886 141 NLKELDLSDNK-IE--SLPSPLRNLPNLKNLDLSFNDL-------SD--LPKLLSNLSNLNNLDLSGNKISD 200 (394)
T ss_pred hcccccccccc-hh--hhhhhhhccccccccccCCchh-------hh--hhhhhhhhhhhhheeccCCcccc
Confidence 56666666642 22 1212234456777776654422 11 11111145666777777666443
No 74
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=88.21 E-value=0.36 Score=26.13 Aligned_cols=25 Identities=36% Similarity=0.553 Sum_probs=18.4
Q ss_pred CCcEEEccCCcCCHH-HHHHHHhCCC
Q 028616 73 KLKRLEMAYHVISTE-IVLKILSSCA 97 (206)
Q Consensus 73 ~Lk~L~L~~~~it~~-~l~~il~~c~ 97 (206)
+||.|.|....++++ .+..++.+||
T Consensus 1 sLKtL~L~~v~f~~~~~l~~LlS~CP 26 (26)
T PF07723_consen 1 SLKTLHLDSVVFSDEDSLERLLSGCP 26 (26)
T ss_pred CCeEEEeeEEEECChhHHHHhhccCc
Confidence 477888887776555 6788888886
No 75
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=87.44 E-value=0.77 Score=44.72 Aligned_cols=33 Identities=18% Similarity=0.142 Sum_probs=17.2
Q ss_pred CCcEEEccCCcCCHHHHHHHHhCCCCccEEeeeCCCC
Q 028616 73 KLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWD 109 (206)
Q Consensus 73 ~Lk~L~L~~~~it~~~l~~il~~c~~Le~LdL~~C~~ 109 (206)
+|+.|+|++|+|+. +-. .-+++|+.|+|++|..
T Consensus 263 ~L~~L~Ls~N~L~~--LP~--~l~~sL~~L~Ls~N~L 295 (754)
T PRK15370 263 ALQSLDLFHNKISC--LPE--NLPEELRYLSVYDNSI 295 (754)
T ss_pred CCCEEECcCCccCc--ccc--ccCCCCcEEECCCCcc
Confidence 56666666665542 110 1124666666666643
No 76
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=87.05 E-value=0.4 Score=43.22 Aligned_cols=86 Identities=14% Similarity=0.024 Sum_probs=51.9
Q ss_pred HhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHHHHHHhCCCCccEEeeeCCCCCCCChH
Q 028616 36 GKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDK 115 (206)
Q Consensus 36 ~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l~~il~~c~~Le~LdL~~C~~v~~~~~ 115 (206)
.+..|+|++|+|+++.+. .|.+ ++. +...+|+.|.|..|+|..-. ..+.++..+|+.|+|.++.-.++...
T Consensus 270 f~~L~~L~~lnlsnN~i~----~i~~-~aF---e~~a~l~eL~L~~N~l~~v~-~~~f~~ls~L~tL~L~~N~it~~~~~ 340 (498)
T KOG4237|consen 270 FKKLPNLRKLNLSNNKIT----RIED-GAF---EGAAELQELYLTRNKLEFVS-SGMFQGLSGLKTLSLYDNQITTVAPG 340 (498)
T ss_pred HhhcccceEeccCCCccc----hhhh-hhh---cchhhhhhhhcCcchHHHHH-HHhhhccccceeeeecCCeeEEEecc
Confidence 345688888888766442 1112 111 24567788888888754332 23456889999999999876644444
Q ss_pred HHHhcCCCCceeCCCC
Q 028616 116 FMKGNFPNLKVLGPFV 131 (206)
Q Consensus 116 ~l~~~~~~L~~L~~~~ 131 (206)
++ +....|..|++..
T Consensus 341 aF-~~~~~l~~l~l~~ 355 (498)
T KOG4237|consen 341 AF-QTLFSLSTLNLLS 355 (498)
T ss_pred cc-cccceeeeeehcc
Confidence 33 2334466666544
No 77
>PRK15386 type III secretion protein GogB; Provisional
Probab=85.80 E-value=0.51 Score=42.79 Aligned_cols=71 Identities=18% Similarity=0.137 Sum_probs=41.0
Q ss_pred cCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCc-CCHHHHH
Q 028616 12 RLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHV-ISTEIVL 90 (206)
Q Consensus 12 ~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~-it~~~l~ 90 (206)
.|++|+.|+|++| .++ .+ .+.-++|+.|.++.+.- . ..+.. .+ .++|++|.|++|. ++.
T Consensus 50 ~~~~l~~L~Is~c-~L~--sL---P~LP~sLtsL~Lsnc~n-L--tsLP~----~L---P~nLe~L~Ls~Cs~L~s---- 109 (426)
T PRK15386 50 EARASGRLYIKDC-DIE--SL---PVLPNELTEITIENCNN-L--TTLPG----SI---PEGLEKLTVCHCPEISG---- 109 (426)
T ss_pred HhcCCCEEEeCCC-CCc--cc---CCCCCCCcEEEccCCCC-c--ccCCc----hh---hhhhhheEccCcccccc----
Confidence 4899999999998 344 22 23345799998864311 0 00111 11 2578888888883 531
Q ss_pred HHHhCCCCccEEeeeC
Q 028616 91 KILSSCALLEFLDLRG 106 (206)
Q Consensus 91 ~il~~c~~Le~LdL~~ 106 (206)
+ -++|+.|+|.+
T Consensus 110 -L---P~sLe~L~L~~ 121 (426)
T PRK15386 110 -L---PESVRSLEIKG 121 (426)
T ss_pred -c---ccccceEEeCC
Confidence 1 24566666653
No 78
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=83.81 E-value=0.54 Score=24.12 Aligned_cols=12 Identities=17% Similarity=0.371 Sum_probs=5.8
Q ss_pred CcEEEccCCcCC
Q 028616 74 LKRLEMAYHVIS 85 (206)
Q Consensus 74 Lk~L~L~~~~it 85 (206)
|++|+|++|.|+
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 455555555443
No 79
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=83.23 E-value=1.9 Score=42.04 Aligned_cols=34 Identities=18% Similarity=0.115 Sum_probs=18.0
Q ss_pred CCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccC
Q 028616 14 SAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPL 52 (206)
Q Consensus 14 ~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~ 52 (206)
++|+.|++++|. ++. +.. ..+++|+.|.++.+.+
T Consensus 325 ~sL~~L~Ls~N~-Lt~--LP~--~l~~sL~~L~Ls~N~L 358 (754)
T PRK15370 325 PGLKTLEAGENA-LTS--LPA--SLPPELQVLDVSKNQI 358 (754)
T ss_pred ccceeccccCCc-ccc--CCh--hhcCcccEEECCCCCC
Confidence 567777777763 331 111 1235677777765543
No 80
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=79.52 E-value=1 Score=39.66 Aligned_cols=87 Identities=24% Similarity=0.229 Sum_probs=50.0
Q ss_pred CCCCcEEEeccCCCCCHHHHHHHHhcC-CCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHHHH
Q 028616 13 LSAVTFLDLSYCSKIGAPALEAIGKHC-KLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLK 91 (206)
Q Consensus 13 ~~~L~~L~Ls~c~~it~~~l~~l~~~c-~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l~~ 91 (206)
.++++.|.+.++. ++. +....... ++|+.|.++.+.+ .....-...+|+|+.|++++|+++...-..
T Consensus 115 ~~~l~~L~l~~n~-i~~--i~~~~~~~~~nL~~L~l~~N~i---------~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~ 182 (394)
T COG4886 115 LTNLTSLDLDNNN-ITD--IPPLIGLLKSNLKELDLSDNKI---------ESLPSPLRNLPNLKNLDLSFNDLSDLPKLL 182 (394)
T ss_pred ccceeEEecCCcc-ccc--Cccccccchhhcccccccccch---------hhhhhhhhccccccccccCCchhhhhhhhh
Confidence 3567777777652 332 22222222 3677777664422 111112348899999999999877654432
Q ss_pred HHhCCCCccEEeeeCCCCCCCC
Q 028616 92 ILSSCALLEFLDLRGCWDVKLD 113 (206)
Q Consensus 92 il~~c~~Le~LdL~~C~~v~~~ 113 (206)
...++|+.|+++++....+.
T Consensus 183 --~~~~~L~~L~ls~N~i~~l~ 202 (394)
T COG4886 183 --SNLSNLNNLDLSGNKISDLP 202 (394)
T ss_pred --hhhhhhhheeccCCccccCc
Confidence 15677777877777654333
No 81
>PRK15386 type III secretion protein GogB; Provisional
Probab=79.45 E-value=0.82 Score=41.48 Aligned_cols=31 Identities=16% Similarity=0.160 Sum_probs=18.8
Q ss_pred CCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeec
Q 028616 15 AVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNM 49 (206)
Q Consensus 15 ~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~ 49 (206)
+|++|.|++|..++. +.. ...++|++|.++.
T Consensus 73 sLtsL~Lsnc~nLts--LP~--~LP~nLe~L~Ls~ 103 (426)
T PRK15386 73 ELTEITIENCNNLTT--LPG--SIPEGLEKLTVCH 103 (426)
T ss_pred CCcEEEccCCCCccc--CCc--hhhhhhhheEccC
Confidence 588899988876532 111 1125677777753
No 82
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=78.57 E-value=1.7 Score=22.85 Aligned_cols=14 Identities=29% Similarity=0.700 Sum_probs=8.9
Q ss_pred CCCcEEEccCCcCC
Q 028616 72 PKLKRLEMAYHVIS 85 (206)
Q Consensus 72 p~Lk~L~L~~~~it 85 (206)
++|++|+|++|.|+
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00369 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 56677777766543
No 83
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=78.57 E-value=1.7 Score=22.85 Aligned_cols=14 Identities=29% Similarity=0.700 Sum_probs=8.9
Q ss_pred CCCcEEEccCCcCC
Q 028616 72 PKLKRLEMAYHVIS 85 (206)
Q Consensus 72 p~Lk~L~L~~~~it 85 (206)
++|++|+|++|.|+
T Consensus 2 ~~L~~L~L~~N~l~ 15 (26)
T smart00370 2 PNLRELDLSNNQLS 15 (26)
T ss_pred CCCCEEECCCCcCC
Confidence 56677777766543
No 84
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins.
Probab=69.28 E-value=3.6 Score=37.39 Aligned_cols=6 Identities=33% Similarity=0.772 Sum_probs=3.0
Q ss_pred CceeCC
Q 028616 124 LKVLGP 129 (206)
Q Consensus 124 L~~L~~ 129 (206)
|++|+-
T Consensus 38 IRkLge 43 (458)
T PF10446_consen 38 IRKLGE 43 (458)
T ss_pred HhhhhH
Confidence 455544
No 85
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=68.53 E-value=1.5 Score=39.80 Aligned_cols=41 Identities=20% Similarity=-0.001 Sum_probs=28.7
Q ss_pred HHhcCCCCcEEEccCCcCCHHHHHHHHhCCCCccEEeeeCCCC
Q 028616 67 IASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWD 109 (206)
Q Consensus 67 ia~~~p~Lk~L~L~~~~it~~~l~~il~~c~~Le~LdL~~C~~ 109 (206)
+.+++++|..|+|..|+++.--...++ +++|++||++++.-
T Consensus 247 ~~~~L~~l~vLDLRdNklke~Pde~cl--LrsL~rLDlSNN~i 287 (565)
T KOG0472|consen 247 HLKHLNSLLVLDLRDNKLKEVPDEICL--LRSLERLDLSNNDI 287 (565)
T ss_pred HhcccccceeeeccccccccCchHHHH--hhhhhhhcccCCcc
Confidence 445778899999999886654443333 56788888887654
No 86
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=66.69 E-value=5.2 Score=21.61 Aligned_cols=14 Identities=21% Similarity=0.453 Sum_probs=10.3
Q ss_pred CCCcEEEccCCcCC
Q 028616 72 PKLKRLEMAYHVIS 85 (206)
Q Consensus 72 p~Lk~L~L~~~~it 85 (206)
.+|+.|.|++|+|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 57788888887764
No 87
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=63.40 E-value=2.2 Score=30.97 Aligned_cols=100 Identities=19% Similarity=0.168 Sum_probs=44.1
Q ss_pred cCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCc--CCHHHH
Q 028616 12 RLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHV--ISTEIV 89 (206)
Q Consensus 12 ~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~--it~~~l 89 (206)
.|++|+.+.+... +..-+- .....|++|+.+.+... +. .+.. .+ ...+++|+.+.+..+. +...
T Consensus 10 ~~~~l~~i~~~~~--~~~I~~-~~F~~~~~l~~i~~~~~-~~----~i~~---~~-F~~~~~l~~i~~~~~~~~i~~~-- 75 (129)
T PF13306_consen 10 NCSNLESITFPNT--IKKIGE-NAFSNCTSLKSINFPNN-LT----SIGD---NA-FSNCKSLESITFPNNLKSIGDN-- 75 (129)
T ss_dssp T-TT--EEEETST----EE-T-TTTTT-TT-SEEEESST-TS----CE-T---TT-TTT-TT-EEEEETSTT-EE-TT--
T ss_pred CCCCCCEEEECCC--eeEeCh-hhccccccccccccccc-cc----ccce---ee-eecccccccccccccccccccc--
Confidence 5788999998742 221111 12356788999988632 21 1111 11 2367788999886532 3322
Q ss_pred HHHHhCCCCccEEeeeCCCCCCCChHHHHhcCCCCceeCCC
Q 028616 90 LKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPF 130 (206)
Q Consensus 90 ~~il~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~~ 130 (206)
....|++|+.+.+... +..-....-..+ +|+.+...
T Consensus 76 --~F~~~~~l~~i~~~~~--~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 76 --AFSNCTNLKNIDIPSN--ITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp --TTTT-TTECEEEETTT---BEEHTTTTTT--T--EEE-T
T ss_pred --cccccccccccccCcc--ccEEchhhhcCC-CceEEEEC
Confidence 3446889998888542 211111222445 66666553
No 88
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=53.99 E-value=9 Score=33.77 Aligned_cols=35 Identities=17% Similarity=0.060 Sum_probs=20.2
Q ss_pred HHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcC
Q 028616 30 PALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTM 71 (206)
Q Consensus 30 ~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~ 71 (206)
.++..+.+.|+.|++|++..+ +|+..++.++...+
T Consensus 245 ~a~a~ml~~n~sl~slnvesn-------FItg~gi~a~~~al 279 (353)
T KOG3735|consen 245 FAIAEMLKENKSLTSLNVESN-------FITGLGIMALLRAL 279 (353)
T ss_pred HHHHHHHhhcchhhheecccc-------ccccHHHHHHHHHH
Confidence 344555566677777766533 45666666665444
No 89
>PF07735 FBA_2: F-box associated; InterPro: IPR012885 This domain is found is found towards the C terminus of proteins that contain an F-box, IPR001810 from INTERPRO, suggesting that they are effectors linked with ubiquitination.
Probab=52.86 E-value=59 Score=21.02 Aligned_cols=30 Identities=27% Similarity=0.406 Sum_probs=17.6
Q ss_pred cEEEccCCcCCHHHHHHHHhC-----CCCccEEee
Q 028616 75 KRLEMAYHVISTEIVLKILSS-----CALLEFLDL 104 (206)
Q Consensus 75 k~L~L~~~~it~~~l~~il~~-----c~~Le~LdL 104 (206)
+++.|..+.+|...+..+++. .|+|++|.+
T Consensus 35 ~~i~l~~~~~t~~dln~Flk~W~~G~~~~Le~l~i 69 (70)
T PF07735_consen 35 KKIELWNSKFTNEDLNKFLKHWINGSNPRLEYLEI 69 (70)
T ss_pred CEEEEECCCCCHHHHHHHHHHHHcCCCcCCcEEEE
Confidence 455556666666666666553 366666543
No 90
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=52.51 E-value=8.3 Score=20.92 Aligned_cols=14 Identities=29% Similarity=0.608 Sum_probs=9.6
Q ss_pred CCCcEEEccCCcCC
Q 028616 72 PKLKRLEMAYHVIS 85 (206)
Q Consensus 72 p~Lk~L~L~~~~it 85 (206)
++|+.|++++|+++
T Consensus 2 ~~L~~L~vs~N~Lt 15 (26)
T smart00364 2 PSLKELNVSNNQLT 15 (26)
T ss_pred cccceeecCCCccc
Confidence 46777777777654
No 91
>smart00446 LRRcap occurring C-terminal to leucine-rich repeats. A motif occurring C-terminal to leucine-rich repeats in "sds22-like" and "typical" LRR-containing proteins.
Probab=38.83 E-value=20 Score=19.44 Aligned_cols=16 Identities=25% Similarity=0.258 Sum_probs=10.3
Q ss_pred HHHhCCCCccEEeeeC
Q 028616 91 KILSSCALLEFLDLRG 106 (206)
Q Consensus 91 ~il~~c~~Le~LdL~~ 106 (206)
.++..+|+|+.||...
T Consensus 7 ~Vi~~LPqL~~LD~~~ 22 (26)
T smart00446 7 KVIRLLPQLRKLDXXX 22 (26)
T ss_pred HHHHHCCccceecccc
Confidence 3455677777777643
No 92
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=36.94 E-value=18 Score=36.16 Aligned_cols=24 Identities=13% Similarity=0.278 Sum_probs=13.0
Q ss_pred CChHHHHHHHhcCCCCcEEEccCC
Q 028616 59 SQDDEANAIASTMPKLKRLEMAYH 82 (206)
Q Consensus 59 v~d~~~~~ia~~~p~Lk~L~L~~~ 82 (206)
|.+.--..+..+.|.|-.=.+.+|
T Consensus 1287 IwD~RTF~lLh~VP~Ldqc~VtFN 1310 (1516)
T KOG1832|consen 1287 IWDMRTFKLLHSVPSLDQCAVTFN 1310 (1516)
T ss_pred hhhhHHHHHHhcCccccceEEEec
Confidence 344444445556666666555554
No 93
>PF08004 DUF1699: Protein of unknown function (DUF1699); InterPro: IPR012546 This family contains many archaeal proteins which have very conserved sequences.
Probab=34.96 E-value=60 Score=24.57 Aligned_cols=60 Identities=15% Similarity=0.270 Sum_probs=33.6
Q ss_pred CCCcEEEccCCcCCHHHHHHHHhCCCCccEEeeeCCCCCCCChHH-HHhcCCCCceeCCCCc
Q 028616 72 PKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKF-MKGNFPNLKVLGPFVM 132 (206)
Q Consensus 72 p~Lk~L~L~~~~it~~~l~~il~~c~~Le~LdL~~C~~v~~~~~~-l~~~~~~L~~L~~~~~ 132 (206)
|+=+.+.|++ +-|+..+..+++.||+|+.+.+-....-+++... ..-.+++++.+..-++
T Consensus 17 ~nE~~VHlAF-RPSN~Dif~Lv~~CP~lk~iqiP~SY~~t~Sksi~mfL~mqgI~LleGDVw 77 (131)
T PF08004_consen 17 PNEEIVHLAF-RPSNKDIFSLVERCPNLKAIQIPPSYYKTLSKSIKMFLEMQGIELLEGDVW 77 (131)
T ss_pred CCceEEEEEe-cCcchHHHHHHHhCCCCeEEeCChHHHHHHhHHHHHHHHhcCceeeccccc
Confidence 5555555543 4667778888888888888776443322222221 1133556666666554
No 94
>PF08004 DUF1699: Protein of unknown function (DUF1699); InterPro: IPR012546 This family contains many archaeal proteins which have very conserved sequences.
Probab=30.58 E-value=1.1e+02 Score=23.24 Aligned_cols=33 Identities=9% Similarity=0.178 Sum_probs=17.2
Q ss_pred CCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEe
Q 028616 13 LSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCR 47 (206)
Q Consensus 13 ~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L 47 (206)
.|+=+.+.|.. .-|+..+..|.+.||+|+.+.+
T Consensus 16 n~nE~~VHlAF--RPSN~Dif~Lv~~CP~lk~iqi 48 (131)
T PF08004_consen 16 NPNEEIVHLAF--RPSNKDIFSLVERCPNLKAIQI 48 (131)
T ss_pred CCCceEEEEEe--cCcchHHHHHHHhCCCCeEEeC
Confidence 44444444443 2355555555566666665544
No 95
>KOG1189 consensus Global transcriptional regulator, cell division control protein [Amino acid transport and metabolism]
Probab=30.49 E-value=34 Score=33.56 Aligned_cols=9 Identities=22% Similarity=0.922 Sum_probs=6.9
Q ss_pred CccCCCCCc
Q 028616 133 DYYEINDWD 141 (206)
Q Consensus 133 d~~~~~~~~ 141 (206)
.|++.+.|.
T Consensus 861 ~Ffe~GgW~ 869 (960)
T KOG1189|consen 861 AFFEDGGWS 869 (960)
T ss_pred HHHhcCCee
Confidence 677888884
No 96
>COG5406 Nucleosome binding factor SPN, SPT16 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics]
Probab=29.82 E-value=43 Score=32.29 Aligned_cols=9 Identities=22% Similarity=0.951 Sum_probs=6.1
Q ss_pred CccCCCCCc
Q 028616 133 DYYEINDWD 141 (206)
Q Consensus 133 d~~~~~~~~ 141 (206)
-||+.+.|.
T Consensus 913 ~FfedGgW~ 921 (1001)
T COG5406 913 SFFEDGGWS 921 (1001)
T ss_pred HHhhcCcce
Confidence 567777773
No 97
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=26.52 E-value=58 Score=32.83 Aligned_cols=10 Identities=30% Similarity=0.371 Sum_probs=4.3
Q ss_pred HHhCCCCccE
Q 028616 92 ILSSCALLEF 101 (206)
Q Consensus 92 il~~c~~Le~ 101 (206)
+++..|.|-.
T Consensus 1295 lLh~VP~Ldq 1304 (1516)
T KOG1832|consen 1295 LLHSVPSLDQ 1304 (1516)
T ss_pred HHhcCccccc
Confidence 3444444433
No 98
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=25.01 E-value=21 Score=33.96 Aligned_cols=82 Identities=12% Similarity=0.116 Sum_probs=44.3
Q ss_pred CCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHHHHH
Q 028616 13 LSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKI 92 (206)
Q Consensus 13 ~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l~~i 92 (206)
+..|+.|+++.++.. .-...++ |=.|.+|.++++.+.+. -+-..+|+.|+.|.|-.|.++.--....
T Consensus 188 l~slr~l~vrRn~l~--~lp~El~--~LpLi~lDfScNkis~i---------Pv~fr~m~~Lq~l~LenNPLqSPPAqIC 254 (722)
T KOG0532|consen 188 LTSLRDLNVRRNHLE--DLPEELC--SLPLIRLDFSCNKISYL---------PVDFRKMRHLQVLQLENNPLQSPPAQIC 254 (722)
T ss_pred HHHHHHHHHhhhhhh--hCCHHHh--CCceeeeecccCceeec---------chhhhhhhhheeeeeccCCCCCChHHHH
Confidence 445556666665322 1223343 33477777776654211 1112366778888887777665555555
Q ss_pred HhCC-CCccEEeeeCC
Q 028616 93 LSSC-ALLEFLDLRGC 107 (206)
Q Consensus 93 l~~c-~~Le~LdL~~C 107 (206)
.++- +=.++|+..-|
T Consensus 255 ~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 255 EKGKVHIFKYLSTQAC 270 (722)
T ss_pred hccceeeeeeecchhc
Confidence 5443 34466666666
No 99
>KOG4364 consensus Chromatin assembly factor-I [Chromatin structure and dynamics]
Probab=20.94 E-value=82 Score=30.49 Aligned_cols=27 Identities=15% Similarity=0.229 Sum_probs=15.5
Q ss_pred HHHHhcCCCCceeCCCCcCccCCC--CCcCCC
Q 028616 115 KFMKGNFPNLKVLGPFVMDYYEIN--DWDDCS 144 (206)
Q Consensus 115 ~~l~~~~~~L~~L~~~~~d~~~~~--~~~~~~ 144 (206)
..|..++|--+...+ ||.+.. +|++..
T Consensus 503 ~~VsarrPlAq~~ll---DYEVdSDeEWEEEe 531 (811)
T KOG4364|consen 503 QVVSARRPLAQDPLL---DYEVDSDEEWEEEE 531 (811)
T ss_pred cccccCCcccccccc---cccccCcccccccC
Confidence 456677775553333 777665 676533
No 100
>PHA02811 putative host range protein; Provisional
Probab=20.53 E-value=43 Score=27.02 Aligned_cols=15 Identities=40% Similarity=0.574 Sum_probs=6.4
Q ss_pred CccCCCCCcCCCCCC
Q 028616 133 DYYEINDWDDCSDYS 147 (206)
Q Consensus 133 d~~~~~~~~~~~~~~ 147 (206)
+|+-....++|..+.
T Consensus 157 ~y~~~~~~d~~~~~~ 171 (197)
T PHA02811 157 DYYLYDACDYCIISS 171 (197)
T ss_pred ccccccccceeeecc
Confidence 444334444455443
Done!