Query 028616
Match_columns 206
No_of_seqs 210 out of 1450
Neff 7.6
Searched_HMMs 29240
Date Tue Mar 26 00:00:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028616.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028616hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3e4g_A ATP synthase subunit S, 99.6 5.7E-16 1.9E-20 122.7 7.1 104 14-126 61-171 (176)
2 2ca6_A RAN GTPase-activating p 99.5 9E-14 3.1E-18 120.6 12.5 113 11-131 184-312 (386)
3 2ca6_A RAN GTPase-activating p 99.5 8.5E-14 2.9E-18 120.8 10.8 117 1-125 199-333 (386)
4 3e4g_A ATP synthase subunit S, 99.5 5.4E-14 1.8E-18 111.3 6.1 93 1-101 73-171 (176)
5 2ast_B S-phase kinase-associat 99.4 1.1E-12 3.6E-17 111.1 12.9 96 4-107 108-205 (336)
6 2p1m_B Transport inhibitor res 99.4 5.8E-13 2E-17 120.7 11.3 117 2-129 385-513 (594)
7 3ogk_B Coronatine-insensitive 99.4 1.9E-12 6.5E-17 117.4 13.3 127 1-131 365-522 (592)
8 3ogk_B Coronatine-insensitive 99.4 2E-12 6.9E-17 117.2 12.6 117 4-127 426-543 (592)
9 2ast_B S-phase kinase-associat 99.4 1.6E-12 5.5E-17 110.0 10.9 123 2-131 131-256 (336)
10 2p1m_B Transport inhibitor res 99.4 1.7E-12 5.7E-17 117.6 11.0 117 3-128 421-537 (594)
11 1io0_A Tropomodulin; LRR prote 99.3 3.8E-11 1.3E-15 94.8 11.9 117 4-130 26-159 (185)
12 3un9_A NLR family member X1; l 99.2 9.4E-11 3.2E-15 102.3 10.0 122 1-130 113-247 (372)
13 1io0_A Tropomodulin; LRR prote 99.2 2.6E-10 9E-15 89.9 11.6 101 1-109 49-163 (185)
14 1pgv_A TMD-1, tropomodulin TMD 99.1 1.2E-09 4.1E-14 87.7 11.7 120 4-130 31-165 (197)
15 3un9_A NLR family member X1; l 99.0 6.7E-10 2.3E-14 96.9 9.5 122 2-131 85-220 (372)
16 1z7x_W Ribonuclease inhibitor; 99.0 1.5E-09 5.2E-14 95.3 11.3 99 2-108 16-124 (461)
17 1z7x_W Ribonuclease inhibitor; 98.9 6.9E-09 2.4E-13 91.1 12.3 94 7-108 49-153 (461)
18 2je0_A Acidic leucine-rich nuc 98.9 2.2E-09 7.6E-14 80.7 6.9 106 12-129 40-147 (149)
19 2ell_A Acidic leucine-rich nuc 98.8 2.4E-09 8.1E-14 82.1 4.5 108 12-131 47-156 (168)
20 2ra8_A Uncharacterized protein 98.8 7E-09 2.4E-13 90.4 7.3 35 13-48 192-227 (362)
21 1pgv_A TMD-1, tropomodulin TMD 98.7 4.4E-08 1.5E-12 78.6 9.5 100 1-108 54-168 (197)
22 4ezg_A Putative uncharacterize 98.7 4.7E-09 1.6E-13 82.8 3.7 105 12-131 64-168 (197)
23 4ezg_A Putative uncharacterize 98.7 4.9E-09 1.7E-13 82.7 3.6 105 11-131 85-190 (197)
24 3goz_A Leucine-rich repeat-con 98.7 4.3E-08 1.5E-12 84.2 9.8 38 72-109 138-179 (362)
25 2je0_A Acidic leucine-rich nuc 98.7 2.4E-09 8.1E-14 80.5 -0.3 108 12-131 15-122 (149)
26 2ra8_A Uncharacterized protein 98.7 3.2E-08 1.1E-12 86.2 6.8 101 1-108 205-318 (362)
27 2ell_A Acidic leucine-rich nuc 98.6 6.5E-09 2.2E-13 79.6 1.9 108 12-131 22-129 (168)
28 3goz_A Leucine-rich repeat-con 98.6 1.2E-07 4.2E-12 81.3 8.6 116 11-131 47-176 (362)
29 1a9n_A U2A', U2A'; complex (nu 98.4 5.3E-08 1.8E-12 75.3 1.8 61 70-130 86-148 (176)
30 1ds9_A Outer arm dynein; leuci 98.4 3.8E-08 1.3E-12 77.5 -0.6 60 70-129 113-181 (198)
31 1a9n_A U2A', U2A'; complex (nu 98.3 1.7E-07 6E-12 72.3 2.9 107 12-132 17-123 (176)
32 3rw6_A Nuclear RNA export fact 98.3 5.5E-07 1.9E-11 75.4 5.3 96 30-132 160-261 (267)
33 1wwl_A Monocyte differentiatio 98.3 2.2E-07 7.4E-12 78.2 2.9 110 13-131 148-262 (312)
34 4fmz_A Internalin; leucine ric 98.3 1.6E-06 5.3E-11 73.3 8.2 101 11-129 218-318 (347)
35 4fmz_A Internalin; leucine ric 98.3 1.6E-06 5.6E-11 73.2 7.1 102 11-130 240-341 (347)
36 3v47_A TOLL-like receptor 5B a 98.2 1.5E-07 5.2E-12 82.4 0.5 111 12-131 52-163 (455)
37 4glp_A Monocyte differentiatio 98.2 3.6E-07 1.2E-11 76.7 2.8 111 12-131 143-260 (310)
38 1h6u_A Internalin H; cell adhe 98.2 2.1E-06 7.3E-11 72.2 6.9 15 94-108 192-206 (308)
39 1wwl_A Monocyte differentiatio 98.2 1E-06 3.4E-11 74.1 4.8 113 11-132 118-238 (312)
40 2o6s_A Variable lymphocyte rec 98.2 1.7E-07 5.7E-12 74.1 -0.1 58 70-129 98-155 (208)
41 1h6u_A Internalin H; cell adhe 98.2 1.7E-06 5.8E-11 72.8 5.3 101 11-131 104-204 (308)
42 1h6t_A Internalin B; cell adhe 98.2 2.5E-06 8.6E-11 71.2 6.2 36 70-108 154-189 (291)
43 1h6t_A Internalin B; cell adhe 98.2 2.5E-06 8.6E-11 71.2 6.1 55 70-130 132-186 (291)
44 3rfs_A Internalin B, repeat mo 98.2 2.5E-07 8.6E-12 76.3 -0.1 38 12-51 83-120 (272)
45 1ozn_A Reticulon 4 receptor; N 98.2 3.4E-07 1.2E-11 75.6 0.7 60 70-131 175-234 (285)
46 4glp_A Monocyte differentiatio 98.1 1.1E-06 3.6E-11 73.8 3.6 112 11-132 114-234 (310)
47 4fcg_A Uncharacterized protein 98.1 4.4E-07 1.5E-11 77.1 1.1 56 71-130 182-237 (328)
48 3e6j_A Variable lymphocyte rec 98.1 4.3E-07 1.5E-11 73.3 0.9 58 70-130 110-167 (229)
49 2v9t_B SLIT homolog 2 protein 98.1 6.7E-07 2.3E-11 71.8 2.0 108 12-131 54-161 (220)
50 3m19_A Variable lymphocyte rec 98.1 2.4E-07 8.2E-12 75.4 -0.6 38 12-51 57-94 (251)
51 3rfs_A Internalin B, repeat mo 98.1 4E-07 1.4E-11 75.1 0.4 85 11-108 60-144 (272)
52 3o6n_A APL1; leucine-rich repe 98.1 3E-07 1E-11 79.3 -0.5 109 10-130 65-173 (390)
53 1m9s_A Internalin B; cell inva 98.1 2.9E-06 9.9E-11 78.4 6.0 56 70-131 151-206 (605)
54 2z66_A Variable lymphocyte rec 98.1 8.5E-08 2.9E-12 80.0 -4.0 108 11-129 123-230 (306)
55 2v70_A SLIT-2, SLIT homolog 2 98.1 2.6E-07 8.9E-12 74.2 -1.0 109 11-131 54-162 (220)
56 3m19_A Variable lymphocyte rec 98.1 4.5E-07 1.5E-11 73.8 0.3 109 11-131 80-188 (251)
57 2z66_A Variable lymphocyte rec 98.1 6.7E-08 2.3E-12 80.7 -4.8 61 70-131 148-208 (306)
58 1dce_A Protein (RAB geranylger 98.1 1.4E-06 4.9E-11 79.8 3.6 101 14-131 441-542 (567)
59 1m9s_A Internalin B; cell inva 98.1 2.3E-06 7.9E-11 79.0 5.1 56 70-131 129-184 (605)
60 1ozn_A Reticulon 4 receptor; N 98.1 2.6E-07 8.9E-12 76.4 -1.2 37 12-50 54-90 (285)
61 2o6s_A Variable lymphocyte rec 98.1 4E-07 1.4E-11 71.8 -0.2 107 13-131 27-133 (208)
62 2o6q_A Variable lymphocyte rec 98.1 3.9E-07 1.3E-11 75.0 -0.4 59 70-130 131-189 (270)
63 4fcg_A Uncharacterized protein 98.1 8.8E-07 3E-11 75.3 1.7 87 12-110 148-242 (328)
64 2z80_A TOLL-like receptor 2, v 98.1 1.7E-07 5.8E-12 79.9 -2.9 39 70-108 122-160 (353)
65 2wfh_A SLIT homolog 2 protein 98.1 6.4E-07 2.2E-11 70.6 0.5 106 13-131 30-135 (193)
66 3v47_A TOLL-like receptor 5B a 98.1 4.1E-07 1.4E-11 79.7 -0.8 60 70-131 345-404 (455)
67 1xeu_A Internalin C; cellular 98.1 8.4E-06 2.9E-10 67.1 7.2 106 12-130 61-180 (263)
68 2z81_A CD282 antigen, TOLL-lik 98.1 1.9E-07 6.6E-12 83.7 -3.0 39 70-108 96-134 (549)
69 2z63_A TOLL-like receptor 4, v 98.0 4.2E-07 1.5E-11 81.6 -1.1 109 11-130 49-157 (570)
70 2o6r_A Variable lymphocyte rec 98.0 5.9E-07 2E-11 69.2 -0.3 107 13-131 27-133 (177)
71 2o6q_A Variable lymphocyte rec 98.0 5.4E-07 1.8E-11 74.1 -0.5 61 69-131 154-214 (270)
72 1p9a_G Platelet glycoprotein I 98.0 5.1E-07 1.8E-11 75.5 -0.9 38 70-108 122-159 (290)
73 2z7x_B TOLL-like receptor 1, v 98.0 3.8E-06 1.3E-10 74.9 4.7 39 12-51 346-385 (520)
74 4g8a_A TOLL-like receptor 4; l 98.0 5.5E-07 1.9E-11 81.3 -0.9 107 12-129 74-180 (635)
75 2z62_A TOLL-like receptor 4, v 98.0 4.8E-07 1.6E-11 74.4 -1.2 37 12-50 50-86 (276)
76 3oja_B Anopheles plasmodium-re 98.0 7.6E-07 2.6E-11 81.5 -0.5 109 10-130 71-179 (597)
77 1o6v_A Internalin A; bacterial 98.0 7.7E-06 2.6E-10 72.3 6.0 56 70-131 329-384 (466)
78 3rw6_A Nuclear RNA export fact 98.0 5.8E-06 2E-10 69.1 4.9 92 6-105 162-259 (267)
79 3o53_A Protein LRIM1, AGAP0063 98.0 1.3E-06 4.5E-11 73.5 0.9 37 13-50 143-179 (317)
80 2z81_A CD282 antigen, TOLL-lik 98.0 2.2E-05 7.6E-10 70.2 8.7 39 70-108 359-398 (549)
81 3j0a_A TOLL-like receptor 5; m 98.0 4.3E-07 1.5E-11 86.5 -2.8 39 70-108 121-159 (844)
82 1o6v_A Internalin A; bacterial 97.9 1E-05 3.5E-10 71.5 6.2 55 70-130 307-361 (466)
83 3vq2_A TLR4, TOLL-like recepto 97.9 7.2E-07 2.5E-11 81.0 -1.4 109 11-130 53-161 (606)
84 2z63_A TOLL-like receptor 4, v 97.9 1.8E-07 6.1E-12 84.0 -5.4 39 70-108 443-481 (570)
85 3zyj_A Leucine-rich repeat-con 97.9 5.1E-07 1.7E-11 79.4 -2.5 88 12-110 86-173 (440)
86 2v9t_B SLIT homolog 2 protein 97.9 8.4E-07 2.9E-11 71.2 -1.1 106 14-131 32-137 (220)
87 3t6q_A CD180 antigen; protein- 97.9 4.1E-07 1.4E-11 82.6 -3.3 60 70-130 447-508 (606)
88 1xeu_A Internalin C; cellular 97.9 3.8E-06 1.3E-10 69.2 2.8 61 37-110 125-185 (263)
89 2xot_A Amphoterin-induced prot 97.9 8.3E-07 2.8E-11 76.3 -1.3 38 12-51 62-99 (361)
90 2id5_A Lingo-1, leucine rich r 97.9 1.1E-06 3.8E-11 77.6 -0.6 58 70-129 126-183 (477)
91 1w8a_A SLIT protein; signaling 97.9 4E-07 1.4E-11 71.5 -3.2 105 15-130 30-134 (192)
92 3zyi_A Leucine-rich repeat-con 97.9 5.5E-07 1.9E-11 79.4 -2.6 88 12-110 97-184 (452)
93 3o6n_A APL1; leucine-rich repe 97.9 2.9E-06 9.8E-11 73.1 1.9 55 70-130 293-347 (390)
94 2z80_A TOLL-like receptor 2, v 97.9 2.7E-05 9.3E-10 66.1 7.8 112 12-131 196-310 (353)
95 2z62_A TOLL-like receptor 4, v 97.9 1.7E-06 5.7E-11 71.1 0.1 91 11-111 73-163 (276)
96 3e6j_A Variable lymphocyte rec 97.9 2.2E-06 7.6E-11 69.0 0.8 106 13-131 39-144 (229)
97 2v70_A SLIT-2, SLIT homolog 2 97.9 8.2E-07 2.8E-11 71.2 -2.0 108 13-131 31-138 (220)
98 3vq2_A TLR4, TOLL-like recepto 97.9 3.7E-07 1.3E-11 82.9 -4.6 59 70-130 471-529 (606)
99 1ogq_A PGIP-2, polygalacturona 97.9 5.9E-07 2E-11 75.7 -3.1 88 12-109 74-161 (313)
100 1xku_A Decorin; proteoglycan, 97.9 7.4E-06 2.5E-10 68.9 3.6 115 11-130 142-271 (330)
101 4g8a_A TOLL-like receptor 4; l 97.8 1.1E-06 3.7E-11 79.4 -1.9 105 15-131 53-157 (635)
102 3rgz_A Protein brassinosteroid 97.8 7.5E-06 2.6E-10 77.0 3.6 38 12-50 149-188 (768)
103 2z7x_B TOLL-like receptor 1, v 97.8 3.8E-06 1.3E-10 74.9 1.5 109 8-131 368-477 (520)
104 3t6q_A CD180 antigen; protein- 97.8 7.1E-07 2.4E-11 81.0 -3.5 38 71-108 399-436 (606)
105 3oja_A Leucine-rich immune mol 97.8 3.3E-06 1.1E-10 75.7 0.9 37 13-50 143-179 (487)
106 2xot_A Amphoterin-induced prot 97.8 9.2E-07 3.1E-11 76.0 -2.7 86 13-108 38-123 (361)
107 3zyj_A Leucine-rich repeat-con 97.8 3.7E-06 1.3E-10 73.8 1.0 60 70-131 229-288 (440)
108 1ziw_A TOLL-like receptor 3; i 97.8 2.3E-06 8E-11 78.7 -0.4 38 12-51 47-84 (680)
109 3zyi_A Leucine-rich repeat-con 97.8 5.1E-06 1.7E-10 73.2 1.8 60 70-131 240-299 (452)
110 1xku_A Decorin; proteoglycan, 97.8 1.7E-05 5.9E-10 66.6 4.9 39 12-52 74-112 (330)
111 3o53_A Protein LRIM1, AGAP0063 97.8 2.4E-06 8.2E-11 71.9 -0.5 105 13-131 119-223 (317)
112 2id5_A Lingo-1, leucine rich r 97.8 3.2E-06 1.1E-10 74.6 0.2 105 15-131 225-329 (477)
113 4eco_A Uncharacterized protein 97.8 1.6E-05 5.6E-10 73.3 4.8 113 10-131 202-339 (636)
114 2xwt_C Thyrotropin receptor; s 97.8 8.5E-07 2.9E-11 71.5 -3.5 106 12-130 53-164 (239)
115 3oja_B Anopheles plasmodium-re 97.8 6.2E-06 2.1E-10 75.4 1.7 103 12-131 252-354 (597)
116 1ds9_A Outer arm dynein; leuci 97.8 3.2E-05 1.1E-09 60.5 5.4 84 12-106 91-183 (198)
117 1p9a_G Platelet glycoprotein I 97.7 1.2E-05 4.1E-10 67.1 2.9 103 12-129 53-155 (290)
118 1dce_A Protein (RAB geranylger 97.7 1.9E-05 6.5E-10 72.3 4.4 105 11-128 460-566 (567)
119 2o6r_A Variable lymphocyte rec 97.7 3E-06 1E-10 65.2 -1.1 89 11-110 49-137 (177)
120 3rgz_A Protein brassinosteroid 97.7 2E-05 6.8E-10 74.2 4.3 87 10-110 174-260 (768)
121 3oja_A Leucine-rich immune mol 97.7 3.9E-06 1.3E-10 75.2 -0.7 104 13-130 119-222 (487)
122 4ecn_A Leucine-rich repeat pro 97.7 2.3E-05 8E-10 75.3 4.3 56 70-130 571-627 (876)
123 4b8c_D Glucose-repressible alc 97.7 9.5E-06 3.3E-10 76.3 1.5 103 11-129 221-323 (727)
124 4ecn_A Leucine-rich repeat pro 97.7 2.4E-05 8.2E-10 75.3 4.3 106 12-130 489-603 (876)
125 3bz5_A Internalin-J, INLJ; leu 97.7 3.7E-05 1.3E-09 68.3 5.1 35 13-51 41-75 (457)
126 1ogq_A PGIP-2, polygalacturona 97.7 2.3E-06 8E-11 72.0 -2.8 57 70-129 219-275 (313)
127 3bz5_A Internalin-J, INLJ; leu 97.6 3.2E-05 1.1E-09 68.7 4.2 97 11-131 61-157 (457)
128 3a79_B TLR6, VLRB.59, TOLL-lik 97.6 9.5E-06 3.2E-10 73.3 0.7 13 12-24 351-363 (562)
129 3a79_B TLR6, VLRB.59, TOLL-lik 97.6 8.1E-06 2.8E-10 73.8 -0.3 36 70-109 98-133 (562)
130 1w8a_A SLIT protein; signaling 97.6 2.9E-06 9.9E-11 66.5 -2.9 90 10-110 50-139 (192)
131 2wfh_A SLIT homolog 2 protein 97.6 8.7E-06 3E-10 64.0 -0.4 90 10-110 50-139 (193)
132 1ziw_A TOLL-like receptor 3; i 97.6 9.4E-06 3.2E-10 74.7 -0.3 35 94-129 557-591 (680)
133 2ft3_A Biglycan; proteoglycan, 97.6 1.1E-05 3.8E-10 68.0 -0.0 14 95-108 145-158 (332)
134 2ft3_A Biglycan; proteoglycan, 97.5 3.3E-06 1.1E-10 71.2 -3.6 39 70-110 239-277 (332)
135 2xwt_C Thyrotropin receptor; s 97.5 1.4E-06 4.8E-11 70.1 -5.9 41 11-52 77-117 (239)
136 4eco_A Uncharacterized protein 97.5 2.4E-05 8.1E-10 72.2 1.1 88 12-109 247-342 (636)
137 2r9u_A Variable lymphocyte rec 97.5 3.9E-05 1.3E-09 59.3 2.1 39 70-109 79-117 (174)
138 3sb4_A Hypothetical leucine ri 97.5 1.2E-05 4.2E-10 67.9 -1.0 36 13-50 201-236 (329)
139 3g39_A Variable lymphocyte rec 97.3 2.2E-05 7.4E-10 60.4 -0.8 86 14-110 30-115 (170)
140 4b8c_D Glucose-repressible alc 97.3 3.8E-05 1.3E-09 72.2 0.3 85 12-110 245-329 (727)
141 3cvr_A Invasion plasmid antige 97.3 0.00035 1.2E-08 64.1 6.5 10 15-24 60-69 (571)
142 3g39_A Variable lymphocyte rec 97.1 9.1E-05 3.1E-09 56.8 0.9 102 15-131 10-111 (170)
143 2r9u_A Variable lymphocyte rec 97.1 0.00012 4E-09 56.5 1.2 101 16-131 14-114 (174)
144 3g06_A SSPH2 (leucine-rich rep 97.1 0.00042 1.4E-08 64.2 4.9 39 70-110 259-297 (622)
145 3cvr_A Invasion plasmid antige 97.0 0.00045 1.6E-08 63.3 3.9 13 96-108 229-241 (571)
146 3j0a_A TOLL-like receptor 5; m 97.0 0.00039 1.3E-08 66.1 3.4 39 12-52 336-374 (844)
147 3g06_A SSPH2 (leucine-rich rep 96.9 0.0014 4.9E-08 60.6 7.0 55 70-131 239-293 (622)
148 2ifg_A High affinity nerve gro 96.9 8.1E-05 2.8E-09 62.9 -1.5 89 11-110 28-116 (347)
149 1jl5_A Outer protein YOPM; leu 96.6 0.0044 1.5E-07 54.7 7.4 33 14-50 131-163 (454)
150 3sb4_A Hypothetical leucine ri 96.6 0.00049 1.7E-08 57.9 0.8 110 3-128 215-327 (329)
151 2ifg_A High affinity nerve gro 96.3 0.00053 1.8E-08 57.8 -0.3 100 18-131 12-112 (347)
152 1jl5_A Outer protein YOPM; leu 96.3 0.0086 2.9E-07 52.9 7.2 35 70-109 151-185 (454)
153 4fdw_A Leucine rich hypothetic 94.0 0.0056 1.9E-07 53.4 -1.5 13 12-24 178-190 (401)
154 4ay9_X Follicle-stimulating ho 93.8 0.0066 2.3E-07 51.4 -1.3 13 12-24 102-114 (350)
155 4ay9_X Follicle-stimulating ho 92.8 0.0054 1.9E-07 51.9 -3.6 86 14-110 30-117 (350)
156 4fdw_A Leucine rich hypothetic 92.4 0.016 5.3E-07 50.6 -1.2 82 14-106 248-332 (401)
157 4fs7_A Uncharacterized protein 91.2 0.0071 2.4E-07 52.0 -4.7 32 70-105 318-351 (394)
158 4gt6_A Cell surface protein; l 90.5 0.051 1.7E-06 46.6 0.0 100 12-130 263-365 (394)
159 4gt6_A Cell surface protein; l 88.6 0.098 3.3E-06 44.8 0.4 98 11-129 285-385 (394)
160 4h09_A Hypothetical leucine ri 88.4 0.034 1.2E-06 47.2 -2.6 57 69-129 283-340 (379)
161 3rfe_A Platelet glycoprotein I 80.4 0.52 1.8E-05 34.2 1.0 37 73-110 32-68 (130)
162 4h09_A Hypothetical leucine ri 77.3 0.27 9.3E-06 41.5 -1.6 58 37-106 283-342 (379)
163 4fs7_A Uncharacterized protein 69.6 0.77 2.6E-05 39.1 -0.6 32 70-105 295-328 (394)
164 3rfe_A Platelet glycoprotein I 62.9 7.5 0.00026 27.8 3.8 37 40-84 31-67 (130)
165 2lz0_A Uncharacterized protein 30.6 6.9 0.00024 27.0 -1.0 33 70-106 18-52 (100)
166 4fp9_B Mterf domain-containing 30.1 11 0.00037 31.9 0.0 20 83-102 160-179 (335)
167 2oj5_A Viral attachment protei 22.5 22 0.00077 26.4 0.5 27 174-204 129-155 (165)
No 1
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.62 E-value=5.7e-16 Score=122.68 Aligned_cols=104 Identities=13% Similarity=0.148 Sum_probs=88.8
Q ss_pred CCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhc---CCCCcEEEccCCc-CCHHHH
Q 028616 14 SAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIAST---MPKLKRLEMAYHV-ISTEIV 89 (206)
Q Consensus 14 ~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~---~p~Lk~L~L~~~~-it~~~l 89 (206)
.+|+.|+|++|. ||+.|+..+ ..|++|+.|+|+.+. .|++.++.+|+.. +++|++|+|++|. ||+.|+
T Consensus 61 ~~L~~LDLs~~~-Itd~GL~~L-~~~~~L~~L~L~~C~------~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl 132 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSIGFDHM-EGLQYVEKIRLCKCH------YIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI 132 (176)
T ss_dssp CCEEEEEEESCC-CCGGGGGGG-TTCSCCCEEEEESCT------TCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH
T ss_pred ceEeEEeCcCCC-ccHHHHHHh-cCCCCCCEEEeCCCC------ccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH
Confidence 469999999997 999999999 589999999998553 5799999999963 5799999999996 999999
Q ss_pred HHHHhCCCCccEEeeeCCCCCCCChH---HHHhcCCCCce
Q 028616 90 LKILSSCALLEFLDLRGCWDVKLDDK---FMKGNFPNLKV 126 (206)
Q Consensus 90 ~~il~~c~~Le~LdL~~C~~v~~~~~---~l~~~~~~L~~ 126 (206)
..+. .||+|++|+|++|..++.... .+++..|+++.
T Consensus 133 ~~L~-~~~~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~V 171 (176)
T 3e4g_A 133 IALH-HFRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLEL 171 (176)
T ss_dssp HHGG-GCTTCCEEEEESCTTCCCHHHHHHHHHHHCTTCEE
T ss_pred HHHh-cCCCCCEEECCCCCCCCchHHHHHHHHHHCCCcEE
Confidence 9886 699999999999999944332 34578888775
No 2
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.52 E-value=9e-14 Score=120.63 Aligned_cols=113 Identities=16% Similarity=0.088 Sum_probs=78.9
Q ss_pred hcCCCCcEEEeccCCCCCHHHHHHHHh----cCCCCceEEeecccCCCCCCCCChHHHHHHH---hcCCCCcEEEccCCc
Q 028616 11 GRLSAVTFLDLSYCSKIGAPALEAIGK----HCKLLVVLCRNMHPLDTADKLSQDDEANAIA---STMPKLKRLEMAYHV 83 (206)
Q Consensus 11 ~~~~~L~~L~Ls~c~~it~~~l~~l~~----~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia---~~~p~Lk~L~L~~~~ 83 (206)
..+++|++|+|++| .+++.++.++.. .+++|+.|.|+.+ .+++.++..++ ..+|+|++|+|++|.
T Consensus 184 ~~~~~L~~L~L~~n-~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n-------~l~~~g~~~l~~~l~~~~~L~~L~L~~n~ 255 (386)
T 2ca6_A 184 QSHRLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDN-------TFTHLGSSALAIALKSWPNLRELGLNDCL 255 (386)
T ss_dssp HHCTTCCEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSS-------CCHHHHHHHHHHHGGGCTTCCEEECTTCC
T ss_pred HhCCCcCEEECcCC-CCCHhHHHHHHHHHhhcCCCccEEECcCC-------CCCcHHHHHHHHHHccCCCcCEEECCCCC
Confidence 36778888888876 477777666555 6778888877655 34555555554 467899999999999
Q ss_pred CCHHHHHHHHhC-----CCCccEEeeeCCCCCCC----ChHHHHhcCCCCceeCCCC
Q 028616 84 ISTEIVLKILSS-----CALLEFLDLRGCWDVKL----DDKFMKGNFPNLKVLGPFV 131 (206)
Q Consensus 84 it~~~l~~il~~-----c~~Le~LdL~~C~~v~~----~~~~l~~~~~~L~~L~~~~ 131 (206)
|+..++..+... +++|+.|+|++|..... -...+...+++|+.|.+..
T Consensus 256 i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~ 312 (386)
T 2ca6_A 256 LSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNG 312 (386)
T ss_dssp CCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTT
T ss_pred CchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccC
Confidence 998877766543 78899999998875521 0012235578999988754
No 3
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.50 E-value=8.5e-14 Score=120.79 Aligned_cols=117 Identities=21% Similarity=0.173 Sum_probs=89.1
Q ss_pred CCHHHHHHHHh----cCCCCcEEEeccCCCCCHHHHHHHH---hcCCCCceEEeecccCCCCCCCCChHHHHHHHhc---
Q 028616 1 MSDSIVAQIAG----RLSAVTFLDLSYCSKIGAPALEAIG---KHCKLLVVLCRNMHPLDTADKLSQDDEANAIAST--- 70 (206)
Q Consensus 1 Isd~~l~~l~~----~~~~L~~L~Ls~c~~it~~~l~~l~---~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~--- 70 (206)
|++.++..++. .+++|+.|+|++|. +++.|+..++ ..+++|+.|.|+.+ .++..++.+++..
T Consensus 199 l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~-l~~~g~~~l~~~l~~~~~L~~L~L~~n-------~i~~~~~~~l~~~l~~ 270 (386)
T 2ca6_A 199 IRPEGIEHLLLEGLAYCQELKVLDLQDNT-FTHLGSSALAIALKSWPNLRELGLNDC-------LLSARGAAAVVDAFSK 270 (386)
T ss_dssp CCHHHHHHHHHTTGGGCTTCCEEECCSSC-CHHHHHHHHHHHGGGCTTCCEEECTTC-------CCCHHHHHHHHHHHHT
T ss_pred CCHhHHHHHHHHHhhcCCCccEEECcCCC-CCcHHHHHHHHHHccCCCcCEEECCCC-------CCchhhHHHHHHHHhh
Confidence 45666666655 79999999999985 8887766665 56899999999866 4577777776643
Q ss_pred --CCCCcEEEccCCcCCHHHHHHHH----hCCCCccEEeeeCCCCCCCCh--HHHHhcCCCCc
Q 028616 71 --MPKLKRLEMAYHVISTEIVLKIL----SSCALLEFLDLRGCWDVKLDD--KFMKGNFPNLK 125 (206)
Q Consensus 71 --~p~Lk~L~L~~~~it~~~l~~il----~~c~~Le~LdL~~C~~v~~~~--~~l~~~~~~L~ 125 (206)
+++|++|+|++|.|+..++..+. .+||+|++|+|++|....... ..+...+++++
T Consensus 271 ~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~~~~ 333 (386)
T 2ca6_A 271 LENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRG 333 (386)
T ss_dssp CSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSHHHHHHHHHHHHHT
T ss_pred ccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchhHHHHHHHHhhhcC
Confidence 79999999999999997665544 458999999999998764453 34455556555
No 4
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.46 E-value=5.4e-14 Score=111.29 Aligned_cols=93 Identities=18% Similarity=0.124 Sum_probs=81.4
Q ss_pred CCHHHHHHHHhcCCCCcEEEeccCCCCCHHHHHHHHhc---CCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEE
Q 028616 1 MSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKH---CKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRL 77 (206)
Q Consensus 1 Isd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~---c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L 77 (206)
|+|.++..+. .|++|++|+|++|..||+.|+.+|++. |++|+.|+|+.+. .|++.++.+|+ +||+|++|
T Consensus 73 Itd~GL~~L~-~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~------~ITD~Gl~~L~-~~~~L~~L 144 (176)
T 3e4g_A 73 IMSIGFDHME-GLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCG------NVTDKGIIALH-HFRNLKYL 144 (176)
T ss_dssp CCGGGGGGGT-TCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCT------TCCHHHHHHGG-GCTTCCEE
T ss_pred ccHHHHHHhc-CCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCC------cCCHHHHHHHh-cCCCCCEE
Confidence 6888998884 899999999999999999999999983 7899999998552 57999999998 79999999
Q ss_pred EccCCc-CCHHH--HHHHHhCCCCccE
Q 028616 78 EMAYHV-ISTEI--VLKILSSCALLEF 101 (206)
Q Consensus 78 ~L~~~~-it~~~--l~~il~~c~~Le~ 101 (206)
+|++|. ||+.+ +..+.+..|+++.
T Consensus 145 ~L~~c~~Itd~gl~~~~L~~~lP~l~V 171 (176)
T 3e4g_A 145 FLSDLPGVKEKEKIVQAFKTSLPSLEL 171 (176)
T ss_dssp EEESCTTCCCHHHHHHHHHHHCTTCEE
T ss_pred ECCCCCCCCchHHHHHHHHHHCCCcEE
Confidence 999997 99987 4566678898874
No 5
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.44 E-value=1.1e-12 Score=111.12 Aligned_cols=96 Identities=18% Similarity=0.209 Sum_probs=44.3
Q ss_pred HHHHHHHhcCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCC-
Q 028616 4 SIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYH- 82 (206)
Q Consensus 4 ~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~- 82 (206)
.++..+...|++|++|+|++| .++......+++ |++|+.|.++.+. .+++.++..+...+|+|++|+|++|
T Consensus 108 ~~~~~~~~~~~~L~~L~L~~~-~l~~~~~~~l~~-~~~L~~L~L~~~~------~l~~~~l~~~~~~~~~L~~L~l~~~~ 179 (336)
T 2ast_B 108 STLHGILSQCSKLQNLSLEGL-RLSDPIVNTLAK-NSNLVRLNLSGCS------GFSEFALQTLLSSCSRLDELNLSWCF 179 (336)
T ss_dssp HHHHHHHTTBCCCSEEECTTC-BCCHHHHHHHTT-CTTCSEEECTTCB------SCCHHHHHHHHHHCTTCCEEECCCCT
T ss_pred HHHHHHHhhCCCCCEEeCcCc-ccCHHHHHHHhc-CCCCCEEECCCCC------CCCHHHHHHHHhcCCCCCEEcCCCCC
Confidence 334444555555555555554 245555544443 5555555554321 1233333333334444444444444
Q ss_pred cCCHHHHHHHHhCCC-CccEEeeeCC
Q 028616 83 VISTEIVLKILSSCA-LLEFLDLRGC 107 (206)
Q Consensus 83 ~it~~~l~~il~~c~-~Le~LdL~~C 107 (206)
.++..++..++..|| +|++|+|++|
T Consensus 180 ~l~~~~~~~~~~~l~~~L~~L~l~~~ 205 (336)
T 2ast_B 180 DFTEKHVQVAVAHVSETITQLNLSGY 205 (336)
T ss_dssp TCCHHHHHHHHHHSCTTCCEEECCSC
T ss_pred CcChHHHHHHHHhcccCCCEEEeCCC
Confidence 344444444444444 4444444444
No 6
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.43 E-value=5.8e-13 Score=120.67 Aligned_cols=117 Identities=24% Similarity=0.232 Sum_probs=75.1
Q ss_pred CHHHHHHHHhcCCCCcEEEec-----cCCCCC----HHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCC
Q 028616 2 SDSIVAQIAGRLSAVTFLDLS-----YCSKIG----APALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMP 72 (206)
Q Consensus 2 sd~~l~~l~~~~~~L~~L~Ls-----~c~~it----~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p 72 (206)
++.++..++..||+|+.|+|+ +|..++ +.++.++.+.|++|+.|.|+. .+++.++..++..++
T Consensus 385 ~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--------~l~~~~~~~l~~~~~ 456 (594)
T 2p1m_B 385 TNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--------LLTDKVFEYIGTYAK 456 (594)
T ss_dssp CHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--------SCCHHHHHHHHHHCT
T ss_pred CHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC--------cccHHHHHHHHHhch
Confidence 344445555455555555555 344455 455555555555555555531 356777777776688
Q ss_pred CCcEEEccCCcCCHHHHHHHHhCCCCccEEeeeCCCCCCCChHH---HHhcCCCCceeCC
Q 028616 73 KLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKF---MKGNFPNLKVLGP 129 (206)
Q Consensus 73 ~Lk~L~L~~~~it~~~l~~il~~c~~Le~LdL~~C~~v~~~~~~---l~~~~~~L~~L~~ 129 (206)
+|++|+|++|.+++.++..++.+|++|+.|+|++|... +.. +...+++|+.|.+
T Consensus 457 ~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~---~~~~~~~~~~l~~L~~L~l 513 (594)
T 2p1m_B 457 KMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFG---DKALLANASKLETMRSLWM 513 (594)
T ss_dssp TCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCC---HHHHHHTGGGGGGSSEEEE
T ss_pred hccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCc---HHHHHHHHHhCCCCCEEee
Confidence 88888888888888888888788888888888888752 222 2355677777776
No 7
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.41 E-value=1.9e-12 Score=117.36 Aligned_cols=127 Identities=20% Similarity=0.273 Sum_probs=90.7
Q ss_pred CCHHHHHHHHhcCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEee----cccCCCC---------------------
Q 028616 1 MSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRN----MHPLDTA--------------------- 55 (206)
Q Consensus 1 Isd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~----~~~~~~~--------------------- 55 (206)
|++.++..++..||+|+.|+| .|..++..++..+++.|++|+.|+++ ++.+...
T Consensus 365 ~~~~~~~~l~~~~~~L~~L~l-~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L 443 (592)
T 3ogk_B 365 VSQRGLIALAQGCQELEYMAV-YVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAF 443 (592)
T ss_dssp CCHHHHHHHHHHCTTCSEEEE-EESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEE
T ss_pred cCHHHHHHHHhhCccCeEEEe-ecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEE
Confidence 345566666666677777766 34456666776776667777777764 1222110
Q ss_pred ---CCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHHHHHHhCCCCccEEeeeCCCCCCCChHH---HHhcCCCCceeCC
Q 028616 56 ---DKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKF---MKGNFPNLKVLGP 129 (206)
Q Consensus 56 ---g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l~~il~~c~~Le~LdL~~C~~v~~~~~~---l~~~~~~L~~L~~ 129 (206)
...+++.++..++..+|+|++|+|++|.+++.++..++.+|++|++|+|++|. + ++.. +...+++|+.|.+
T Consensus 444 ~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~-l--~~~~~~~~~~~l~~L~~L~l 520 (592)
T 3ogk_B 444 YLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCC-F--SERAIAAAVTKLPSLRYLWV 520 (592)
T ss_dssp ECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCC-C--BHHHHHHHHHHCSSCCEEEE
T ss_pred ecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCC-C--cHHHHHHHHHhcCccCeeEC
Confidence 00257788888888899999999999999999999999999999999999998 4 4432 3467899999887
Q ss_pred CC
Q 028616 130 FV 131 (206)
Q Consensus 130 ~~ 131 (206)
..
T Consensus 521 s~ 522 (592)
T 3ogk_B 521 QG 522 (592)
T ss_dssp ES
T ss_pred cC
Confidence 43
No 8
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.40 E-value=2e-12 Score=117.20 Aligned_cols=117 Identities=14% Similarity=0.115 Sum_probs=92.0
Q ss_pred HHHHHHHhcCCCCcEEEeccCC-CCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCC
Q 028616 4 SIVAQIAGRLSAVTFLDLSYCS-KIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYH 82 (206)
Q Consensus 4 ~~l~~l~~~~~~L~~L~Ls~c~-~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~ 82 (206)
.++..+...|++|+.|+|++|. .+++.++..+++.|++|+.|.|+.+ .+++.++..++.+|++|++|+|++|
T Consensus 426 ~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n-------~l~~~~~~~~~~~~~~L~~L~l~~n 498 (592)
T 3ogk_B 426 NGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYV-------GESDEGLMEFSRGCPNLQKLEMRGC 498 (592)
T ss_dssp HHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSC-------CSSHHHHHHHHTCCTTCCEEEEESC
T ss_pred HHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCC-------CCCHHHHHHHHhcCcccCeeeccCC
Confidence 4666677777777777777654 3778888888888888888888755 4678889999999999999999999
Q ss_pred cCCHHHHHHHHhCCCCccEEeeeCCCCCCCChHHHHhcCCCCcee
Q 028616 83 VISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVL 127 (206)
Q Consensus 83 ~it~~~l~~il~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L 127 (206)
.|++.++..++..|++|++|+|++|......-..+.+.+|.++..
T Consensus 499 ~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~ 543 (592)
T 3ogk_B 499 CFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIE 543 (592)
T ss_dssp CCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEE
T ss_pred CCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEE
Confidence 999999999999999999999999994322222345667766554
No 9
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.39 E-value=1.6e-12 Score=109.99 Aligned_cols=123 Identities=21% Similarity=0.173 Sum_probs=90.4
Q ss_pred CHHHHHHHHhcCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCC-CCcEEEcc
Q 028616 2 SDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMP-KLKRLEMA 80 (206)
Q Consensus 2 sd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p-~Lk~L~L~ 80 (206)
++..+..++ .+++|++|+|++|..++..++..+...|++|+.|.++.+. .+++.++..+...+| +|++|+|+
T Consensus 131 ~~~~~~~l~-~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~------~l~~~~~~~~~~~l~~~L~~L~l~ 203 (336)
T 2ast_B 131 SDPIVNTLA-KNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCF------DFTEKHVQVAVAHVSETITQLNLS 203 (336)
T ss_dssp CHHHHHHHT-TCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCT------TCCHHHHHHHHHHSCTTCCEEECC
T ss_pred CHHHHHHHh-cCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCC------CcChHHHHHHHHhcccCCCEEEeC
Confidence 455566665 4889999999988778888888888888999999887541 345666667677888 88888888
Q ss_pred CC--cCCHHHHHHHHhCCCCccEEeeeCCCCCCCChHHHHhcCCCCceeCCCC
Q 028616 81 YH--VISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPFV 131 (206)
Q Consensus 81 ~~--~it~~~l~~il~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~~~ 131 (206)
+| .+++.++..++.+||+|+.|+|++|..++.........+++|+.|.+..
T Consensus 204 ~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~ 256 (336)
T 2ast_B 204 GYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSR 256 (336)
T ss_dssp SCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTT
T ss_pred CCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCC
Confidence 88 5888888888888888888888888765211111225667888877743
No 10
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.38 E-value=1.7e-12 Score=117.64 Aligned_cols=117 Identities=20% Similarity=0.146 Sum_probs=100.0
Q ss_pred HHHHHHHHhcCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCC
Q 028616 3 DSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYH 82 (206)
Q Consensus 3 d~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~ 82 (206)
+.++..++..|++|+.|+|++ .+++.++..+++.+++|+.|.|+.+ .+++.++.+++.+||+|++|+|++|
T Consensus 421 ~~~~~~l~~~~~~L~~L~L~~--~l~~~~~~~l~~~~~~L~~L~L~~~-------~i~~~~~~~l~~~~~~L~~L~L~~n 491 (594)
T 2p1m_B 421 DIGFGAIVEHCKDLRRLSLSG--LLTDKVFEYIGTYAKKMEMLSVAFA-------GDSDLGMHHVLSGCDSLRKLEIRDC 491 (594)
T ss_dssp HHHHHHHHHHCTTCCEEECCS--SCCHHHHHHHHHHCTTCCEEEEESC-------CSSHHHHHHHHHHCTTCCEEEEESC
T ss_pred hhHHHHHHhhCCCccEEeecC--cccHHHHHHHHHhchhccEeeccCC-------CCcHHHHHHHHhcCCCcCEEECcCC
Confidence 778899999999999999977 6999999999999999999999866 4578999999889999999999999
Q ss_pred cCCHHHHHHHHhCCCCccEEeeeCCCCCCCChHHHHhcCCCCceeC
Q 028616 83 VISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLG 128 (206)
Q Consensus 83 ~it~~~l~~il~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~ 128 (206)
.+++.++..++.+|++|+.|+|++|......-..+...+|+|+...
T Consensus 492 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~ 537 (594)
T 2p1m_B 492 PFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEV 537 (594)
T ss_dssp SCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEE
T ss_pred CCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEE
Confidence 9999999999999999999999999863111122446678776533
No 11
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=99.28 E-value=3.8e-11 Score=94.82 Aligned_cols=117 Identities=19% Similarity=0.125 Sum_probs=92.1
Q ss_pred HHHHHHHhcCCCCcEEEeccCCCCCHHHHHHHHhc---CCCCceEEeecccCCCCCCCCChHHHHHHHhc---CCCCcEE
Q 028616 4 SIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKH---CKLLVVLCRNMHPLDTADKLSQDDEANAIAST---MPKLKRL 77 (206)
Q Consensus 4 ~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~---c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~---~p~Lk~L 77 (206)
..+..+...+++|++|+|++|..+++.|+.++++. +++|+.|.|+.+ .+++.++.+|+.. .++|++|
T Consensus 26 ~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n-------~i~~~g~~~l~~~L~~n~~L~~L 98 (185)
T 1io0_A 26 ETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT-------RSNDPVAFALAEMLKVNNTLKSL 98 (185)
T ss_dssp HHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS-------CCCHHHHHHHHHHHHHCSSCCEE
T ss_pred HHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCC-------CCChHHHHHHHHHHHhCCCcCEE
Confidence 45667777899999999999856999998888764 688999999866 5688998888754 4899999
Q ss_pred EccCCcCCHHHHHHHHh---CCCCccEEee--eCCCCCCCChHH---H---HhcCCCCceeCCC
Q 028616 78 EMAYHVISTEIVLKILS---SCALLEFLDL--RGCWDVKLDDKF---M---KGNFPNLKVLGPF 130 (206)
Q Consensus 78 ~L~~~~it~~~l~~il~---~c~~Le~LdL--~~C~~v~~~~~~---l---~~~~~~L~~L~~~ 130 (206)
+|++|.|++.++.+++. .+++|+.|+| ++|... +.. + .+..+.|+.|.+.
T Consensus 99 ~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~---~~g~~~l~~~L~~n~~L~~L~L~ 159 (185)
T 1io0_A 99 NVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLG---NNVEMEIANMLEKNTTLLKFGYH 159 (185)
T ss_dssp ECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCC---HHHHHHHHHHHHHCSSCCEEECC
T ss_pred ECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCC---HHHHHHHHHHHHhCCCcCEEecc
Confidence 99999999999887765 4689999999 656533 222 2 2566889998874
No 12
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.17 E-value=9.4e-11 Score=102.30 Aligned_cols=122 Identities=10% Similarity=0.049 Sum_probs=71.4
Q ss_pred CCHHHHHHHHhcCCCCcEEEeccCCCCCHHHHHHHHh----cCCCCceEEeecccCCCCCCCCChHHHHHHH---hcCCC
Q 028616 1 MSDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGK----HCKLLVVLCRNMHPLDTADKLSQDDEANAIA---STMPK 73 (206)
Q Consensus 1 Isd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~----~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia---~~~p~ 73 (206)
|++.++..++..+++|+.|+|++| .+++.++.++++ .+++|+.|+|+.+ .+++.++.+++ ..+++
T Consensus 113 l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n-------~l~~~~~~~l~~~L~~~~~ 184 (372)
T 3un9_A 113 LDPAGLRTLLPVFLRARKLGLQLN-SLGPEACKDLRDLLLHDQCQITTLRLSNN-------PLTAAGVAVLMEGLAGNTS 184 (372)
T ss_dssp CCHHHHHHTHHHHHTEEEEECCSS-CCCHHHHHHHHHHHHSTTCCCCEEECCSS-------CCHHHHHHHHHHHHHTCSS
T ss_pred CCHHHHHHHHHHHHhccHhhcCCC-CCCHHHHHHHHHHHHhcCCccceeeCCCC-------CCChHHHHHHHHHHhcCCC
Confidence 345566666666666666666665 466666665553 3456666666544 34555555554 34577
Q ss_pred CcEEEccCCcCCHHHHHHHH---hCCCCccEEeeeCCCCCCCChHHHH---hcCCCCceeCCC
Q 028616 74 LKRLEMAYHVISTEIVLKIL---SSCALLEFLDLRGCWDVKLDDKFMK---GNFPNLKVLGPF 130 (206)
Q Consensus 74 Lk~L~L~~~~it~~~l~~il---~~c~~Le~LdL~~C~~v~~~~~~l~---~~~~~L~~L~~~ 130 (206)
|++|+|++|.|++.++..+. ..+++|+.|+|++|.........+. ..+++|+.|.+.
T Consensus 185 L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls 247 (372)
T 3un9_A 185 VTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLY 247 (372)
T ss_dssp CCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECT
T ss_pred cCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEecc
Confidence 77777777777777655443 4556777777777753311111121 345677777664
No 13
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=99.17 E-value=2.6e-10 Score=89.93 Aligned_cols=101 Identities=12% Similarity=0.093 Sum_probs=82.7
Q ss_pred CCHHHHHHHHh---cCCCCcEEEeccCCCCCHHHHHHHHhc---CCCCceEEeecccCCCCCCCCChHHHHHHHhcC---
Q 028616 1 MSDSIVAQIAG---RLSAVTFLDLSYCSKIGAPALEAIGKH---CKLLVVLCRNMHPLDTADKLSQDDEANAIASTM--- 71 (206)
Q Consensus 1 Isd~~l~~l~~---~~~~L~~L~Ls~c~~it~~~l~~l~~~---c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~--- 71 (206)
|++.++..++. .+++|++|+|++| .|++.|+.+|++. +++|+.|+|+.+ .+++.++.+|+..+
T Consensus 49 i~~~g~~~l~~~L~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~N-------~i~~~g~~~l~~~L~~n 120 (185)
T 1io0_A 49 IPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESN-------FISGSGILALVEALQSN 120 (185)
T ss_dssp CCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSS-------CCCHHHHHHHHHGGGGC
T ss_pred CCHHHHHHHHHHHHhCCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECcCC-------cCCHHHHHHHHHHHHhC
Confidence 46777777765 4789999999998 5999998877654 589999999866 56899999988654
Q ss_pred CCCcEEEc--cCCcCCHHHHHHH---HhCCCCccEEeeeCCCC
Q 028616 72 PKLKRLEM--AYHVISTEIVLKI---LSSCALLEFLDLRGCWD 109 (206)
Q Consensus 72 p~Lk~L~L--~~~~it~~~l~~i---l~~c~~Le~LdL~~C~~ 109 (206)
++|++|+| ++|.|++.++.++ ++.+++|+.|+|++|..
T Consensus 121 ~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 121 TSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp SSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred CCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 79999999 8899999996655 45579999999999864
No 14
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=99.08 E-value=1.2e-09 Score=87.74 Aligned_cols=120 Identities=13% Similarity=0.187 Sum_probs=94.6
Q ss_pred HHHHHHHhcCCCCcEEEeccCCCCCHHHHHHHHhc---CCCCceEEeecccCCCCCCCCChHHHHHHHhcC---CCCcEE
Q 028616 4 SIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKH---CKLLVVLCRNMHPLDTADKLSQDDEANAIASTM---PKLKRL 77 (206)
Q Consensus 4 ~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~---c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~---p~Lk~L 77 (206)
..+..+....+.|++|+|+++..|++.|+.+|++. -..|+.|.|+.+ .+++.++.+||..+ +.|++|
T Consensus 31 ~~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n-------~igd~ga~alA~aL~~N~tL~~L 103 (197)
T 1pgv_A 31 SCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT-------AISDSEARGLIELIETSPSLRVL 103 (197)
T ss_dssp HHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS-------CCBHHHHTTHHHHHHHCSSCCEE
T ss_pred HHHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCC-------CCChHHHHHHHHHHhcCCccCeE
Confidence 46777888899999999998667999998888765 467999999766 56899999998655 899999
Q ss_pred EccCCcCCHHHHHHHHhCC---CCccEEeeeCCCCCCCChHH---H---HhcCCCCceeCCC
Q 028616 78 EMAYHVISTEIVLKILSSC---ALLEFLDLRGCWDVKLDDKF---M---KGNFPNLKVLGPF 130 (206)
Q Consensus 78 ~L~~~~it~~~l~~il~~c---~~Le~LdL~~C~~v~~~~~~---l---~~~~~~L~~L~~~ 130 (206)
+|+.|.|++.|+.+|++.+ +.|+.|+|++|....+.+.. + .+.-+.|+.|++.
T Consensus 104 ~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~ 165 (197)
T 1pgv_A 104 NVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGIS 165 (197)
T ss_dssp ECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECC
T ss_pred ecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEecc
Confidence 9999999999999998776 67999999987541123331 2 2455678887763
No 15
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.04 E-value=6.7e-10 Score=96.90 Aligned_cols=122 Identities=10% Similarity=0.063 Sum_probs=89.5
Q ss_pred CHHHHHHHHhc----CCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHh----cCCC
Q 028616 2 SDSIVAQIAGR----LSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIAS----TMPK 73 (206)
Q Consensus 2 sd~~l~~l~~~----~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~----~~p~ 73 (206)
++.+...++.. +++|++|+|++| .+++.++..++..+++|+.|.|+.+ .+++.++.+++. .+++
T Consensus 85 ~~~~~~~l~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~L~~L~Ls~n-------~l~~~~~~~L~~~L~~~~~~ 156 (372)
T 3un9_A 85 TPVKCTVVAAVLGSGRHALDEVNLASC-QLDPAGLRTLLPVFLRARKLGLQLN-------SLGPEACKDLRDLLLHDQCQ 156 (372)
T ss_dssp CHHHHHHHHHHHSSCSSCEEEEECTTC-CCCHHHHHHTHHHHHTEEEEECCSS-------CCCHHHHHHHHHHHHSTTCC
T ss_pred CHHHHHHHHHHHhhCCCCceEEEecCC-CCCHHHHHHHHHHHHhccHhhcCCC-------CCCHHHHHHHHHHHHhcCCc
Confidence 44444444443 468999999987 4889999888888889999988766 457888777764 4588
Q ss_pred CcEEEccCCcCCHHHHHHHH---hCCCCccEEeeeCCCCCCCChHHH---HhcCCCCceeCCCC
Q 028616 74 LKRLEMAYHVISTEIVLKIL---SSCALLEFLDLRGCWDVKLDDKFM---KGNFPNLKVLGPFV 131 (206)
Q Consensus 74 Lk~L~L~~~~it~~~l~~il---~~c~~Le~LdL~~C~~v~~~~~~l---~~~~~~L~~L~~~~ 131 (206)
|++|+|++|.|++.++..++ ..+++|++|+|++|.........+ ...+++|+.|.+..
T Consensus 157 L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~ 220 (372)
T 3un9_A 157 ITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAY 220 (372)
T ss_dssp CCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCS
T ss_pred cceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCC
Confidence 99999999999998876664 578999999999987431111112 25567888888754
No 16
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.02 E-value=1.5e-09 Score=95.29 Aligned_cols=99 Identities=16% Similarity=0.168 Sum_probs=50.3
Q ss_pred CHHHHHHHHhcCCCCcEEEeccCCCCCHHHHHHH---HhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCC----CC
Q 028616 2 SDSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAI---GKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMP----KL 74 (206)
Q Consensus 2 sd~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l---~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p----~L 74 (206)
++..+..+...+|+|++|+|++|. ++..++.++ .+.+++|+.|.|+.+. +++.++.+++..++ +|
T Consensus 16 ~~~~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-------l~~~~~~~l~~~l~~~~~~L 87 (461)
T 1z7x_W 16 SDARWAELLPLLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSNE-------LGDVGVHCVLQGLQTPSCKI 87 (461)
T ss_dssp CHHHHHHHHHHHTTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTCC-------CHHHHHHHHHHTTCSTTCCC
T ss_pred CchhHHHHHhhcCCccEEEccCCC-CCHHHHHHHHHHHHhCCCcCEEeCCCCc-------CChHHHHHHHHHHhhCCCce
Confidence 455555556666667777776663 565544333 2345666666665432 23444444444443 45
Q ss_pred cEEEccCCcCCHHH---HHHHHhCCCCccEEeeeCCC
Q 028616 75 KRLEMAYHVISTEI---VLKILSSCALLEFLDLRGCW 108 (206)
Q Consensus 75 k~L~L~~~~it~~~---l~~il~~c~~Le~LdL~~C~ 108 (206)
++|+|++|.|++.+ +...+..|++|++|+|++|.
T Consensus 88 ~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 124 (461)
T 1z7x_W 88 QKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNL 124 (461)
T ss_dssp CEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSB
T ss_pred eEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCc
Confidence 55555555554432 22223344555555555444
No 17
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=98.94 E-value=6.9e-09 Score=91.07 Aligned_cols=94 Identities=16% Similarity=0.180 Sum_probs=62.7
Q ss_pred HHHHhcCCCCcEEEeccCCCCCHHHHHHHHhcCC----CCceEEeecccCCCCCCCCChHHHHHH---HhcCCCCcEEEc
Q 028616 7 AQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCK----LLVVLCRNMHPLDTADKLSQDDEANAI---ASTMPKLKRLEM 79 (206)
Q Consensus 7 ~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~----~L~~L~L~~~~~~~~g~~v~d~~~~~i---a~~~p~Lk~L~L 79 (206)
......+++|++|+|++| .+++.++.++++.++ +|+.|.|+.+.+ ++.++..+ ...+++|++|+|
T Consensus 49 ~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i-------~~~~~~~l~~~l~~~~~L~~L~L 120 (461)
T 1z7x_W 49 SSALRVNPALAELNLRSN-ELGDVGVHCVLQGLQTPSCKIQKLSLQNCCL-------TGAGCGVLSSTLRTLPTLQELHL 120 (461)
T ss_dssp HHHHHTCTTCCEEECTTC-CCHHHHHHHHHHTTCSTTCCCCEEECTTSCC-------BGGGHHHHHHHTTSCTTCCEEEC
T ss_pred HHHHHhCCCcCEEeCCCC-cCChHHHHHHHHHHhhCCCceeEEEccCCCC-------CHHHHHHHHHHHccCCceeEEEC
Confidence 344456899999999986 488888888888877 799998876533 44333322 235667777777
Q ss_pred cCCcCCHHHHHHHHhC----CCCccEEeeeCCC
Q 028616 80 AYHVISTEIVLKILSS----CALLEFLDLRGCW 108 (206)
Q Consensus 80 ~~~~it~~~l~~il~~----c~~Le~LdL~~C~ 108 (206)
++|.+++.++..+... .++|++|+|++|.
T Consensus 121 s~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 153 (461)
T 1z7x_W 121 SDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCS 153 (461)
T ss_dssp CSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred CCCcCchHHHHHHHHHHhcCCCcceEEECCCCC
Confidence 7777766666555443 3456666666664
No 18
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.91 E-value=2.2e-09 Score=80.67 Aligned_cols=106 Identities=20% Similarity=0.189 Sum_probs=62.2
Q ss_pred cCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHHHH
Q 028616 12 RLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLK 91 (206)
Q Consensus 12 ~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l~~ 91 (206)
.+++|+.|+|++|. ++.. .....+++|+.|.++.+.+ +.. ...+...+++|++|+|++|.|+......
T Consensus 40 ~l~~L~~L~l~~n~-l~~~---~~~~~l~~L~~L~Ls~n~i-------~~~-~~~~~~~l~~L~~L~ls~N~i~~~~~~~ 107 (149)
T 2je0_A 40 EFEELEFLSTINVG-LTSI---ANLPKLNKLKKLELSDNRV-------SGG-LEVLAEKCPNLTHLNLSGNKIKDLSTIE 107 (149)
T ss_dssp TCTTCCEEECTTSC-CCCC---TTCCCCTTCCEEECCSSCC-------CSC-THHHHHHCTTCCEEECTTSCCCSHHHHG
T ss_pred hcCCCcEEECcCCC-CCCc---hhhhcCCCCCEEECCCCcc-------cch-HHHHhhhCCCCCEEECCCCcCCChHHHH
Confidence 45666666666652 3322 2223456666666654433 111 2223346788888888888877755445
Q ss_pred HHhCCCCccEEeeeCCCCCCCChH--HHHhcCCCCceeCC
Q 028616 92 ILSSCALLEFLDLRGCWDVKLDDK--FMKGNFPNLKVLGP 129 (206)
Q Consensus 92 il~~c~~Le~LdL~~C~~v~~~~~--~l~~~~~~L~~L~~ 129 (206)
.+.++++|+.|++++|........ .....+++|+.|..
T Consensus 108 ~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 108 PLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp GGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred HHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence 566788888888888765433331 23466777877765
No 19
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.83 E-value=2.4e-09 Score=82.10 Aligned_cols=108 Identities=19% Similarity=0.195 Sum_probs=62.6
Q ss_pred cCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHHHH
Q 028616 12 RLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLK 91 (206)
Q Consensus 12 ~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l~~ 91 (206)
.+++|+.|+|++|. ++.. .....+++|+.|.++.+.+.. . ...+...+++|++|+|++|.|+......
T Consensus 47 ~l~~L~~L~l~~n~-l~~~---~~~~~l~~L~~L~Ls~N~l~~-------~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 114 (168)
T 2ell_A 47 EFVNLEFLSLINVG-LISV---SNLPKLPKLKKLELSENRIFG-------G-LDMLAEKLPNLTHLNLSGNKLKDISTLE 114 (168)
T ss_dssp GGGGCCEEEEESSC-CCCC---SSCCCCSSCCEEEEESCCCCS-------C-CCHHHHHCTTCCEEECBSSSCCSSGGGG
T ss_pred hCCCCCEEeCcCCC-CCCh---hhhccCCCCCEEECcCCcCch-------H-HHHHHhhCCCCCEEeccCCccCcchhHH
Confidence 45566666666653 3322 222345666666666553321 0 1223345788888888888777643334
Q ss_pred HHhCCCCccEEeeeCCCCCCCChH--HHHhcCCCCceeCCCC
Q 028616 92 ILSSCALLEFLDLRGCWDVKLDDK--FMKGNFPNLKVLGPFV 131 (206)
Q Consensus 92 il~~c~~Le~LdL~~C~~v~~~~~--~l~~~~~~L~~L~~~~ 131 (206)
.+..+++|+.|+|++|........ .....+++|+.|....
T Consensus 115 ~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~ 156 (168)
T 2ell_A 115 PLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYD 156 (168)
T ss_dssp GGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEE
T ss_pred HHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCC
Confidence 456778888888888765533331 2346677888877744
No 20
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.81 E-value=7e-09 Score=90.36 Aligned_cols=35 Identities=14% Similarity=0.010 Sum_probs=22.7
Q ss_pred CCCCcEEEeccCCCCCHHHHHHHHh-cCCCCceEEee
Q 028616 13 LSAVTFLDLSYCSKIGAPALEAIGK-HCKLLVVLCRN 48 (206)
Q Consensus 13 ~~~L~~L~Ls~c~~it~~~l~~l~~-~c~~L~~L~L~ 48 (206)
+++|++|.|..| .++..++.+++. .+|+|+.|.|+
T Consensus 192 ~~~L~~L~L~~~-~l~~~~l~~l~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 192 RPNLKSLEIISG-GLPDSVVEDILGSDLPNLEKLVLY 227 (362)
T ss_dssp CTTCSEEEEECS-BCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred CCCCcEEEEecC-CCChHHHHHHHHccCCCCcEEEEe
Confidence 566777777655 366666666664 46777777664
No 21
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.74 E-value=4.4e-08 Score=78.57 Aligned_cols=100 Identities=8% Similarity=0.092 Sum_probs=80.4
Q ss_pred CCHHHHHHHHhc---CCCCcEEEeccCCCCCHHHHHHHHh---cCCCCceEEeecccCCCCCCCCChHHHHHHHhcC---
Q 028616 1 MSDSIVAQIAGR---LSAVTFLDLSYCSKIGAPALEAIGK---HCKLLVVLCRNMHPLDTADKLSQDDEANAIASTM--- 71 (206)
Q Consensus 1 Isd~~l~~l~~~---~~~L~~L~Ls~c~~it~~~l~~l~~---~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~--- 71 (206)
|.+.++..|+.. .+.|+.|+|++| .|++.|..+|++ .-+.|+.|+|+.+ .|++.|+.+|++.+
T Consensus 54 igd~ga~~la~aL~~N~~L~~L~L~~n-~igd~ga~alA~aL~~N~tL~~L~L~~N-------~Ig~~Ga~ala~aL~~N 125 (197)
T 1pgv_A 54 VSKERIRSLIEAACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVESN-------FLTPELLARLLRSTLVT 125 (197)
T ss_dssp SCHHHHHHHHHHHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCSS-------BCCHHHHHHHHHHTTTT
T ss_pred CCHHHHHHHHHHHhhCCCcCEEEccCC-CCChHHHHHHHHHHhcCCccCeEecCCC-------cCCHHHHHHHHHHHhhC
Confidence 467777777664 779999999997 599999887774 4588999999876 56899999999877
Q ss_pred CCCcEEEccCC---cCCHHHHHHH---HhCCCCccEEeeeCCC
Q 028616 72 PKLKRLEMAYH---VISTEIVLKI---LSSCALLEFLDLRGCW 108 (206)
Q Consensus 72 p~Lk~L~L~~~---~it~~~l~~i---l~~c~~Le~LdL~~C~ 108 (206)
+.|++|+|+++ .|.+.+..+| ++.-+.|+.|+++.+.
T Consensus 126 ~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 126 QSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp CCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred CceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 68999999865 5798875555 4556899999998654
No 22
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.74 E-value=4.7e-09 Score=82.78 Aligned_cols=105 Identities=15% Similarity=0.080 Sum_probs=63.1
Q ss_pred cCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHHHH
Q 028616 12 RLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLK 91 (206)
Q Consensus 12 ~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l~~ 91 (206)
.+++|+.|+|++| .++.- ..+ ..+++|+.|.++.+.+ +......++ .+++|++|+|++|.++......
T Consensus 64 ~l~~L~~L~l~~n-~~~~~--~~l-~~l~~L~~L~l~~n~l-------~~~~~~~l~-~l~~L~~L~Ls~n~i~~~~~~~ 131 (197)
T 4ezg_A 64 YAHNIKDLTINNI-HATNY--NPI-SGLSNLERLRIMGKDV-------TSDKIPNLS-GLTSLTLLDISHSAHDDSILTK 131 (197)
T ss_dssp GCTTCSEEEEESC-CCSCC--GGG-TTCTTCCEEEEECTTC-------BGGGSCCCT-TCTTCCEEECCSSBCBGGGHHH
T ss_pred cCCCCCEEEccCC-CCCcc--hhh-hcCCCCCEEEeECCcc-------CcccChhhc-CCCCCCEEEecCCccCcHhHHH
Confidence 4666677777666 33321 122 3367777777765533 221122232 6788888888888887755544
Q ss_pred HHhCCCCccEEeeeCCCCCCCChHHHHhcCCCCceeCCCC
Q 028616 92 ILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPFV 131 (206)
Q Consensus 92 il~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~~~ 131 (206)
+ ..+++|+.|+|++|..+..-. ....+++|+.|.+..
T Consensus 132 l-~~l~~L~~L~L~~n~~i~~~~--~l~~l~~L~~L~l~~ 168 (197)
T 4ezg_A 132 I-NTLPKVNSIDLSYNGAITDIM--PLKTLPELKSLNIQF 168 (197)
T ss_dssp H-TTCSSCCEEECCSCTBCCCCG--GGGGCSSCCEEECTT
T ss_pred H-hhCCCCCEEEccCCCCccccH--hhcCCCCCCEEECCC
Confidence 3 478888888888887332221 235677888887743
No 23
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=98.73 E-value=4.9e-09 Score=82.69 Aligned_cols=105 Identities=19% Similarity=0.216 Sum_probs=80.1
Q ss_pred hcCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCc-CCHHHH
Q 028616 11 GRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHV-ISTEIV 89 (206)
Q Consensus 11 ~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~-it~~~l 89 (206)
..+++|+.|+|++| .++......++ .+++|+.|.++.+.+ +......+. .+++|++|+|++|. +++-.
T Consensus 85 ~~l~~L~~L~l~~n-~l~~~~~~~l~-~l~~L~~L~Ls~n~i-------~~~~~~~l~-~l~~L~~L~L~~n~~i~~~~- 153 (197)
T 4ezg_A 85 SGLSNLERLRIMGK-DVTSDKIPNLS-GLTSLTLLDISHSAH-------DDSILTKIN-TLPKVNSIDLSYNGAITDIM- 153 (197)
T ss_dssp TTCTTCCEEEEECT-TCBGGGSCCCT-TCTTCCEEECCSSBC-------BGGGHHHHT-TCSSCCEEECCSCTBCCCCG-
T ss_pred hcCCCCCEEEeECC-ccCcccChhhc-CCCCCCEEEecCCcc-------CcHhHHHHh-hCCCCCEEEccCCCCccccH-
Confidence 46899999999997 47765555554 589999999986643 444455554 89999999999998 77753
Q ss_pred HHHHhCCCCccEEeeeCCCCCCCChHHHHhcCCCCceeCCCC
Q 028616 90 LKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPFV 131 (206)
Q Consensus 90 ~~il~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~~~ 131 (206)
.+.++++|+.|+|++|...... ....+++|+.|....
T Consensus 154 --~l~~l~~L~~L~l~~n~i~~~~---~l~~l~~L~~L~l~~ 190 (197)
T 4ezg_A 154 --PLKTLPELKSLNIQFDGVHDYR---GIEDFPKLNQLYAFS 190 (197)
T ss_dssp --GGGGCSSCCEEECTTBCCCCCT---TGGGCSSCCEEEECB
T ss_pred --hhcCCCCCCEEECCCCCCcChH---HhccCCCCCEEEeeC
Confidence 4778999999999999765333 236789999987743
No 24
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.73 E-value=4.3e-08 Score=84.23 Aligned_cols=38 Identities=16% Similarity=0.177 Sum_probs=18.8
Q ss_pred CCCcEEEccCCcCCHHHHHHH---HhCCC-CccEEeeeCCCC
Q 028616 72 PKLKRLEMAYHVISTEIVLKI---LSSCA-LLEFLDLRGCWD 109 (206)
Q Consensus 72 p~Lk~L~L~~~~it~~~l~~i---l~~c~-~Le~LdL~~C~~ 109 (206)
++|++|+|++|.|++.++..+ +..++ +|+.|+|++|..
T Consensus 138 ~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l 179 (362)
T 3goz_A 138 ASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNL 179 (362)
T ss_dssp TTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCG
T ss_pred CceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCC
Confidence 455555555555554333322 22333 566666665543
No 25
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=98.66 E-value=2.4e-09 Score=80.51 Aligned_cols=108 Identities=25% Similarity=0.200 Sum_probs=78.9
Q ss_pred cCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHHHH
Q 028616 12 RLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLK 91 (206)
Q Consensus 12 ~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l~~ 91 (206)
..++|+.|++++|. +++..+......+++|+.|.++.+.+.. + .....+++|++|+|++|.|+.. +..
T Consensus 15 ~~~~l~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~----~------~~~~~l~~L~~L~Ls~n~i~~~-~~~ 82 (149)
T 2je0_A 15 TPSDVKELVLDNSR-SNEGKLEGLTDEFEELEFLSTINVGLTS----I------ANLPKLNKLKKLELSDNRVSGG-LEV 82 (149)
T ss_dssp CGGGCSEEECTTCB-CBTTBCCSCCTTCTTCCEEECTTSCCCC----C------TTCCCCTTCCEEECCSSCCCSC-THH
T ss_pred CCccCeEEEccCCc-CChhHHHHHHhhcCCCcEEECcCCCCCC----c------hhhhcCCCCCEEECCCCcccch-HHH
Confidence 36889999999984 6544444455678999999998765421 1 2234789999999999998764 455
Q ss_pred HHhCCCCccEEeeeCCCCCCCChHHHHhcCCCCceeCCCC
Q 028616 92 ILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPFV 131 (206)
Q Consensus 92 il~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~~~ 131 (206)
+..++++|+.|+|++|.............+++|+.|.+..
T Consensus 83 ~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~ 122 (149)
T 2je0_A 83 LAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFN 122 (149)
T ss_dssp HHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTT
T ss_pred HhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcC
Confidence 6667999999999999855211112237789999998854
No 26
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.66 E-value=3.2e-08 Score=86.19 Aligned_cols=101 Identities=18% Similarity=0.186 Sum_probs=71.8
Q ss_pred CCHHHHHHHHh-cCCCCcEEEeccCCC--CCH---HHHHHHH--hcCCCCceEEeecccCCCCCCCCChHHHHHHHh--c
Q 028616 1 MSDSIVAQIAG-RLSAVTFLDLSYCSK--IGA---PALEAIG--KHCKLLVVLCRNMHPLDTADKLSQDDEANAIAS--T 70 (206)
Q Consensus 1 Isd~~l~~l~~-~~~~L~~L~Ls~c~~--it~---~~l~~l~--~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~--~ 70 (206)
|++.++..++. .+|+|++|+|+.+.. ..+ .++..+. ..||+|+.|+|..+ .+++.++.+++. .
T Consensus 205 l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~-------~i~~~~~~~la~a~~ 277 (362)
T 2ra8_A 205 LPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDA-------EEQNVVVEMFLESDI 277 (362)
T ss_dssp CCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESC-------TTHHHHHHHHHHCSS
T ss_pred CChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCC-------CCchHHHHHHHhCcc
Confidence 46677778775 589999999864211 112 1222221 35789999999754 345666777764 5
Q ss_pred CCCCcEEEccCCcCCHHHHHHHHhC---CCCccEEeeeCCC
Q 028616 71 MPKLKRLEMAYHVISTEIVLKILSS---CALLEFLDLRGCW 108 (206)
Q Consensus 71 ~p~Lk~L~L~~~~it~~~l~~il~~---c~~Le~LdL~~C~ 108 (206)
+|+|++|+|+.|.|++.++.+++.+ +++|+.|+|++|.
T Consensus 278 ~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 278 LPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp GGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred CCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCc
Confidence 7899999999988999988887654 7999999998885
No 27
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=98.65 E-value=6.5e-09 Score=79.60 Aligned_cols=108 Identities=22% Similarity=0.157 Sum_probs=78.7
Q ss_pred cCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHHHH
Q 028616 12 RLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLK 91 (206)
Q Consensus 12 ~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l~~ 91 (206)
..++|+.|+|++|. +++..+......+++|+.|.++.+.+... .....+++|++|+|++|.|+.. +..
T Consensus 22 ~~~~L~~L~l~~n~-l~~~~i~~~~~~l~~L~~L~l~~n~l~~~----------~~~~~l~~L~~L~Ls~N~l~~~-~~~ 89 (168)
T 2ell_A 22 TPAAVRELVLDNCK-SNDGKIEGLTAEFVNLEFLSLINVGLISV----------SNLPKLPKLKKLELSENRIFGG-LDM 89 (168)
T ss_dssp CTTSCSEEECCSCB-CBTTBCSSCCGGGGGCCEEEEESSCCCCC----------SSCCCCSSCCEEEEESCCCCSC-CCH
T ss_pred CcccCCEEECCCCC-CChhhHHHHHHhCCCCCEEeCcCCCCCCh----------hhhccCCCCCEEECcCCcCchH-HHH
Confidence 36889999999985 55334444456789999999987754311 1234789999999999998764 455
Q ss_pred HHhCCCCccEEeeeCCCCCCCChHHHHhcCCCCceeCCCC
Q 028616 92 ILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPFV 131 (206)
Q Consensus 92 il~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~~~ 131 (206)
+..++++|+.|+|++|.............+++|+.|.+..
T Consensus 90 ~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~ 129 (168)
T 2ell_A 90 LAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFN 129 (168)
T ss_dssp HHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCS
T ss_pred HHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeC
Confidence 5667999999999999765333212236788999998854
No 28
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=98.59 E-value=1.2e-07 Score=81.33 Aligned_cols=116 Identities=18% Similarity=0.111 Sum_probs=57.4
Q ss_pred hcCC-CCcEEEeccCCCCCHHHHHHHHhc----CCCCceEEeecccCCCCCCCCChHHHHHHHhcC-CCCcEEEccCCcC
Q 028616 11 GRLS-AVTFLDLSYCSKIGAPALEAIGKH----CKLLVVLCRNMHPLDTADKLSQDDEANAIASTM-PKLKRLEMAYHVI 84 (206)
Q Consensus 11 ~~~~-~L~~L~Ls~c~~it~~~l~~l~~~----c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~-p~Lk~L~L~~~~i 84 (206)
..+| +|++|+|++| .++..+..++++. +++|+.|.|+.+.+.. .....+......+ ++|++|+|++|.|
T Consensus 47 ~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~----~~~~~l~~~l~~~~~~L~~L~Ls~N~l 121 (362)
T 3goz_A 47 ANTPASVTSLNLSGN-SLGFKNSDELVQILAAIPANVTSLNLSGNFLSY----KSSDELVKTLAAIPFTITVLDLGWNDF 121 (362)
T ss_dssp HTCCTTCCEEECCSS-CGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGG----SCHHHHHHHHHTSCTTCCEEECCSSCG
T ss_pred HhCCCceeEEECcCC-CCCHHHHHHHHHHHhccCCCccEEECcCCcCCh----HHHHHHHHHHHhCCCCccEEECcCCcC
Confidence 3455 6666666665 3454333333332 3666666665543311 1122222222233 6777777777766
Q ss_pred CHHHHHHHH---hC-CCCccEEeeeCCCCCCCChHHHH---hcCC-CCceeCCCC
Q 028616 85 STEIVLKIL---SS-CALLEFLDLRGCWDVKLDDKFMK---GNFP-NLKVLGPFV 131 (206)
Q Consensus 85 t~~~l~~il---~~-c~~Le~LdL~~C~~v~~~~~~l~---~~~~-~L~~L~~~~ 131 (206)
+..+...+. .. +++|+.|+|++|.........+. ..++ +|+.|.+..
T Consensus 122 ~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~ 176 (362)
T 3goz_A 122 SSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRG 176 (362)
T ss_dssp GGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTT
T ss_pred CcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecC
Confidence 555444433 23 45777777777654322222221 2333 677776643
No 29
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.43 E-value=5.3e-08 Score=75.30 Aligned_cols=61 Identities=18% Similarity=0.159 Sum_probs=31.6
Q ss_pred cCCCCcEEEccCCcCCHHHHHHHHhCCCCccEEeeeCCCCCCCChH--HHHhcCCCCceeCCC
Q 028616 70 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDK--FMKGNFPNLKVLGPF 130 (206)
Q Consensus 70 ~~p~Lk~L~L~~~~it~~~l~~il~~c~~Le~LdL~~C~~v~~~~~--~l~~~~~~L~~L~~~ 130 (206)
.+|+|++|+|++|.|+.-.....+..+++|+.|+|++|........ .+...+|+|+.|...
T Consensus 86 ~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~ 148 (176)
T 1a9n_A 86 ALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQ 148 (176)
T ss_dssp HCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTE
T ss_pred cCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCC
Confidence 5566666666666654422212344566666666666654332222 123456666666553
No 30
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.36 E-value=3.8e-08 Score=77.53 Aligned_cols=60 Identities=25% Similarity=0.115 Sum_probs=41.6
Q ss_pred cCCCCcEEEccCCcCCHHHHHHHHhCCCCccEEeeeCCCCCCCC------h---HHHHhcCCCCceeCC
Q 028616 70 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLD------D---KFMKGNFPNLKVLGP 129 (206)
Q Consensus 70 ~~p~Lk~L~L~~~~it~~~l~~il~~c~~Le~LdL~~C~~v~~~------~---~~l~~~~~~L~~L~~ 129 (206)
.+++|++|+|++|.|+.-.....+..+++|+.|++++|...... . ..+...+++|+.|..
T Consensus 113 ~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld~ 181 (198)
T 1ds9_A 113 KLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDG 181 (198)
T ss_dssp HHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEECC
T ss_pred cCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEECC
Confidence 66888888888888887554455668899999999888643110 0 012467888888874
No 31
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.35 E-value=1.7e-07 Score=72.34 Aligned_cols=107 Identities=18% Similarity=0.039 Sum_probs=77.2
Q ss_pred cCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHHHH
Q 028616 12 RLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLK 91 (206)
Q Consensus 12 ~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l~~ 91 (206)
.+++|+.|+|++| .++ .+..+...+++|+.|.++.+.+.. + .. ...+++|++|+|++|.|+.-. ..
T Consensus 17 ~~~~L~~L~l~~n-~l~--~i~~~~~~~~~L~~L~Ls~N~l~~----~-----~~-l~~l~~L~~L~Ls~N~l~~~~-~~ 82 (176)
T 1a9n_A 17 NAVRDRELDLRGY-KIP--VIENLGATLDQFDAIDFSDNEIRK----L-----DG-FPLLRRLKTLLVNNNRICRIG-EG 82 (176)
T ss_dssp CTTSCEEEECTTS-CCC--SCCCGGGGTTCCSEEECCSSCCCE----E-----CC-CCCCSSCCEEECCSSCCCEEC-SC
T ss_pred CcCCceEEEeeCC-CCc--hhHHhhhcCCCCCEEECCCCCCCc----c-----cc-cccCCCCCEEECCCCcccccC-cc
Confidence 3889999999998 466 345577777799999998775531 1 11 237899999999999987431 12
Q ss_pred HHhCCCCccEEeeeCCCCCCCChHHHHhcCCCCceeCCCCc
Q 028616 92 ILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPFVM 132 (206)
Q Consensus 92 il~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~~~~ 132 (206)
+...+++|+.|+|++|.......-.....+++|+.|.+..-
T Consensus 83 ~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N 123 (176)
T 1a9n_A 83 LDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN 123 (176)
T ss_dssp HHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSS
T ss_pred hhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCC
Confidence 34689999999999997653332112357899999988653
No 32
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.31 E-value=5.5e-07 Score=75.37 Aligned_cols=96 Identities=23% Similarity=0.248 Sum_probs=63.2
Q ss_pred HHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHHHHHHhCCCCccEEeeeCCCC
Q 028616 30 PALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWD 109 (206)
Q Consensus 30 ~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l~~il~~c~~Le~LdL~~C~~ 109 (206)
..+..+.+.+|+|+.|.|+.+.+.. + .++..+...+|+|+.|+|++|+|+...-..-++++ +|+.|+|+++..
T Consensus 160 ~~l~i~~~~l~~L~~L~Ls~N~l~~----l--~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl 232 (267)
T 3rw6_A 160 ATLRIIEENIPELLSLNLSNNRLYR----L--DDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSL 232 (267)
T ss_dssp HHHHHHHHHCTTCCEEECTTSCCCC----C--GGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTT
T ss_pred HHHHHHHhhCCCCCEEECCCCCCCC----C--ccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcC
Confidence 3445555778999999998775521 1 12223445789999999999988875332333444 899999998875
Q ss_pred CC-CC---h--HHHHhcCCCCceeCCCCc
Q 028616 110 VK-LD---D--KFMKGNFPNLKVLGPFVM 132 (206)
Q Consensus 110 v~-~~---~--~~l~~~~~~L~~L~~~~~ 132 (206)
.. .. . ..+.+.+|+|+.|.....
T Consensus 233 ~~~~~~~~~y~~~il~~~P~L~~LDg~~v 261 (267)
T 3rw6_A 233 CDTFRDQSTYISAIRERFPKLLRLDGHEL 261 (267)
T ss_dssp GGGCSSHHHHHHHHHHHCTTCCEESSCBC
T ss_pred ccccCcchhHHHHHHHHCcccCeECCcCC
Confidence 42 11 1 135588999999987543
No 33
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.31 E-value=2.2e-07 Score=78.20 Aligned_cols=110 Identities=15% Similarity=0.035 Sum_probs=67.4
Q ss_pred CCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCCh-HHHH-HH-HhcCCCCcEEEccCCcCCH--H
Q 028616 13 LSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQD-DEAN-AI-ASTMPKLKRLEMAYHVIST--E 87 (206)
Q Consensus 13 ~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d-~~~~-~i-a~~~p~Lk~L~L~~~~it~--~ 87 (206)
+++|+.|+|++|. ++......+ ..+++|+.|.++.+.+ .. ..+. .+ ...+++|++|+|++|.|+. .
T Consensus 148 ~~~L~~L~L~~N~-l~~~~~~~~-~~l~~L~~L~Ls~N~l-------~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 218 (312)
T 1wwl_A 148 KPGLKVLSIAQAH-SLNFSCEQV-RVFPALSTLDLSDNPE-------LGERGLISALCPLKFPTLQVLALRNAGMETPSG 218 (312)
T ss_dssp CTTCCEEEEESCS-CCCCCTTTC-CCCSSCCEEECCSCTT-------CHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHH
T ss_pred cCCCcEEEeeCCC-CccchHHHh-ccCCCCCEEECCCCCc-------CcchHHHHHHHhccCCCCCEEECCCCcCcchHH
Confidence 3889999998874 443222222 3578888888875532 22 1111 22 1577888888888888874 3
Q ss_pred HHHHHHhCCCCccEEeeeCCCCCCCChHHHHhcCCCCceeCCCC
Q 028616 88 IVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPFV 131 (206)
Q Consensus 88 ~l~~il~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~~~ 131 (206)
....+..++++|+.|+|++|.............+++|+.|.+..
T Consensus 219 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~ 262 (312)
T 1wwl_A 219 VCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSF 262 (312)
T ss_dssp HHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTT
T ss_pred HHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCC
Confidence 34456678888888888888654222111113456777777744
No 34
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.31 E-value=1.6e-06 Score=73.32 Aligned_cols=101 Identities=21% Similarity=0.154 Sum_probs=48.7
Q ss_pred hcCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHHH
Q 028616 11 GRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVL 90 (206)
Q Consensus 11 ~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l~ 90 (206)
..+++|+.|+|++|. ++... . ...+++|+.|.++.+.+.. + .. ...+++|++|+|++|.++..
T Consensus 218 ~~~~~L~~L~l~~n~-l~~~~--~-~~~l~~L~~L~l~~n~l~~----~-----~~-~~~l~~L~~L~l~~n~l~~~--- 280 (347)
T 4fmz_A 218 ANMTRLNSLKIGNNK-ITDLS--P-LANLSQLTWLEIGTNQISD----I-----NA-VKDLTKLKMLNVGSNQISDI--- 280 (347)
T ss_dssp GGCTTCCEEECCSSC-CCCCG--G-GTTCTTCCEEECCSSCCCC----C-----GG-GTTCTTCCEEECCSSCCCCC---
T ss_pred hcCCcCCEEEccCCc-cCCCc--c-hhcCCCCCEEECCCCccCC----C-----hh-HhcCCCcCEEEccCCccCCC---
Confidence 356777777777763 33211 1 3456777777776543321 0 01 22455555555555554442
Q ss_pred HHHhCCCCccEEeeeCCCCCCCChHHHHhcCCCCceeCC
Q 028616 91 KILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP 129 (206)
Q Consensus 91 ~il~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~ 129 (206)
..+..+++|+.|+|++|......... ...+++|+.|..
T Consensus 281 ~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~L 318 (347)
T 4fmz_A 281 SVLNNLSQLNSLFLNNNQLGNEDMEV-IGGLTNLTTLFL 318 (347)
T ss_dssp GGGGGCTTCSEEECCSSCCCGGGHHH-HHTCTTCSEEEC
T ss_pred hhhcCCCCCCEEECcCCcCCCcChhH-hhccccCCEEEc
Confidence 12345555555555555433112111 234455555544
No 35
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=98.25 E-value=1.6e-06 Score=73.19 Aligned_cols=102 Identities=16% Similarity=0.156 Sum_probs=61.3
Q ss_pred hcCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHHH
Q 028616 11 GRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVL 90 (206)
Q Consensus 11 ~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l~ 90 (206)
..+++|+.|+|++|. ++. +.. ...+++|+.|.++.+.+.. + . ....+++|++|+|++|.++.....
T Consensus 240 ~~l~~L~~L~l~~n~-l~~--~~~-~~~l~~L~~L~l~~n~l~~----~-----~-~~~~l~~L~~L~L~~n~l~~~~~~ 305 (347)
T 4fmz_A 240 ANLSQLTWLEIGTNQ-ISD--INA-VKDLTKLKMLNVGSNQISD----I-----S-VLNNLSQLNSLFLNNNQLGNEDME 305 (347)
T ss_dssp TTCTTCCEEECCSSC-CCC--CGG-GTTCTTCCEEECCSSCCCC----C-----G-GGGGCTTCSEEECCSSCCCGGGHH
T ss_pred hcCCCCCEEECCCCc-cCC--Chh-HhcCCCcCEEEccCCccCC----C-----h-hhcCCCCCCEEECcCCcCCCcChh
Confidence 357777777777763 442 222 3456777777776554321 1 1 134677777777777777665443
Q ss_pred HHHhCCCCccEEeeeCCCCCCCChHHHHhcCCCCceeCCC
Q 028616 91 KILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPF 130 (206)
Q Consensus 91 ~il~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~~ 130 (206)
.+ .++++|+.|+|++|....... ...+++|+.|...
T Consensus 306 ~l-~~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~l~ 341 (347)
T 4fmz_A 306 VI-GGLTNLTTLFLSQNHITDIRP---LASLSKMDSADFA 341 (347)
T ss_dssp HH-HTCTTCSEEECCSSSCCCCGG---GGGCTTCSEESSS
T ss_pred Hh-hccccCCEEEccCCccccccC---hhhhhccceeehh
Confidence 33 467777777777776542222 3567777777663
No 36
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.25 E-value=1.5e-07 Score=82.42 Aligned_cols=111 Identities=18% Similarity=0.176 Sum_probs=64.8
Q ss_pred cCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHHH-
Q 028616 12 RLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVL- 90 (206)
Q Consensus 12 ~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l~- 90 (206)
.+++|+.|+|++|. ++..........+++|+.|.|+.+.+. .....++ ..+++|++|+|++|.++.....
T Consensus 52 ~l~~L~~L~L~~n~-~~~~i~~~~~~~l~~L~~L~Ls~n~l~-------~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~ 122 (455)
T 3v47_A 52 RLQDLQFLKVEQQT-PGLVIRNNTFRGLSSLIILKLDYNQFL-------QLETGAF-NGLANLEVLTLTQCNLDGAVLSG 122 (455)
T ss_dssp SCTTCCEEECCCCS-TTCEECTTTTTTCTTCCEEECTTCTTC-------EECTTTT-TTCTTCCEEECTTSCCBTHHHHS
T ss_pred cCccccEEECcCCc-ccceECcccccccccCCEEeCCCCccC-------ccChhhc-cCcccCCEEeCCCCCCCccccCc
Confidence 46666666666653 210000111233566777766644331 1111122 3678899999998888765433
Q ss_pred HHHhCCCCccEEeeeCCCCCCCChHHHHhcCCCCceeCCCC
Q 028616 91 KILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPFV 131 (206)
Q Consensus 91 ~il~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~~~ 131 (206)
..+.++++|+.|+|++|.........+...+++|+.|.+..
T Consensus 123 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~ 163 (455)
T 3v47_A 123 NFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTF 163 (455)
T ss_dssp STTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTT
T ss_pred ccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCC
Confidence 23567889999999888765443333345678888887754
No 37
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.24 E-value=3.6e-07 Score=76.71 Aligned_cols=111 Identities=14% Similarity=0.011 Sum_probs=64.5
Q ss_pred cCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChH-HHHH--HHhcCCCCcEEEccCCcCCH--
Q 028616 12 RLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDD-EANA--IASTMPKLKRLEMAYHVIST-- 86 (206)
Q Consensus 12 ~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~-~~~~--ia~~~p~Lk~L~L~~~~it~-- 86 (206)
.+++|+.|+|++|. ++..... ....+++|+.|.|+.+.+ ... +... ....+|+|++|+|++|.++.
T Consensus 143 ~~~~L~~L~Ls~n~-l~~~~~~-~~~~l~~L~~L~Ls~N~l-------~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~ 213 (310)
T 4glp_A 143 LKPGLKVLSIAQAH-SPAFSCE-QVRAFPALTSLDLSDNPG-------LGERGLMAALCPHKFPAIQNLALRNTGMETPT 213 (310)
T ss_dssp BCSCCCEEEEECCS-SCCCCTT-SCCCCTTCCEEECCSCTT-------CHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHH
T ss_pred hccCCCEEEeeCCC-cchhhHH-HhccCCCCCEEECCCCCC-------ccchhhhHHHhhhcCCCCCEEECCCCCCCchH
Confidence 58888888888874 4322111 223568888888876532 221 1111 11367888888888888763
Q ss_pred HHHHHHHhCCCCccEEeeeCCCCCCCChHHHH--hcCCCCceeCCCC
Q 028616 87 EIVLKILSSCALLEFLDLRGCWDVKLDDKFMK--GNFPNLKVLGPFV 131 (206)
Q Consensus 87 ~~l~~il~~c~~Le~LdL~~C~~v~~~~~~l~--~~~~~L~~L~~~~ 131 (206)
.....++.++++|++|+|++|.........+. ...++|+.|.+..
T Consensus 214 ~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~ 260 (310)
T 4glp_A 214 GVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSF 260 (310)
T ss_dssp HHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCS
T ss_pred HHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCC
Confidence 33334556778888888888765432111111 1125777776643
No 38
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.22 E-value=2.1e-06 Score=72.18 Aligned_cols=15 Identities=20% Similarity=0.031 Sum_probs=6.7
Q ss_pred hCCCCccEEeeeCCC
Q 028616 94 SSCALLEFLDLRGCW 108 (206)
Q Consensus 94 ~~c~~Le~LdL~~C~ 108 (206)
..+++|+.|+|++|.
T Consensus 192 ~~l~~L~~L~L~~N~ 206 (308)
T 1h6u_A 192 ASLPNLIEVHLKNNQ 206 (308)
T ss_dssp GGCTTCCEEECTTSC
T ss_pred cCCCCCCEEEccCCc
Confidence 344444444444443
No 39
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=98.21 E-value=1e-06 Score=74.07 Aligned_cols=113 Identities=16% Similarity=0.066 Sum_probs=75.3
Q ss_pred hcCCCCcEEEeccCCCCCHH--HHHHHHhc-CCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHH
Q 028616 11 GRLSAVTFLDLSYCSKIGAP--ALEAIGKH-CKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTE 87 (206)
Q Consensus 11 ~~~~~L~~L~Ls~c~~it~~--~l~~l~~~-c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~ 87 (206)
..+++|+.|+|++|. ++.. .+..+... +++|+.|.++.+.+.... ...+ ..+++|++|+|++|+++..
T Consensus 118 ~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~-------~~~~-~~l~~L~~L~Ls~N~l~~~ 188 (312)
T 1wwl_A 118 ATGPDLNILNLRNVS-WATRDAWLAELQQWLKPGLKVLSIAQAHSLNFS-------CEQV-RVFPALSTLDLSDNPELGE 188 (312)
T ss_dssp CCSCCCSEEEEESCB-CSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCC-------TTTC-CCCSSCCEEECCSCTTCHH
T ss_pred hcCCCccEEEccCCC-CcchhHHHHHHHHhhcCCCcEEEeeCCCCccch-------HHHh-ccCCCCCEEECCCCCcCcc
Confidence 568999999999974 5533 23333221 489999999877653211 0112 3789999999999997654
Q ss_pred -HHHHHH--hCCCCccEEeeeCCCCCCCChH--HHHhcCCCCceeCCCCc
Q 028616 88 -IVLKIL--SSCALLEFLDLRGCWDVKLDDK--FMKGNFPNLKVLGPFVM 132 (206)
Q Consensus 88 -~l~~il--~~c~~Le~LdL~~C~~v~~~~~--~l~~~~~~L~~L~~~~~ 132 (206)
++..-+ ..+++|+.|+|++|........ .+...+++|+.|.+..-
T Consensus 189 ~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N 238 (312)
T 1wwl_A 189 RGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHN 238 (312)
T ss_dssp HHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTS
T ss_pred hHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCC
Confidence 333233 7899999999999975411111 23356789999988653
No 40
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.21 E-value=1.7e-07 Score=74.11 Aligned_cols=58 Identities=14% Similarity=0.088 Sum_probs=26.2
Q ss_pred cCCCCcEEEccCCcCCHHHHHHHHhCCCCccEEeeeCCCCCCCChHHHHhcCCCCceeCC
Q 028616 70 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP 129 (206)
Q Consensus 70 ~~p~Lk~L~L~~~~it~~~l~~il~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~ 129 (206)
.+++|++|+|++|.|+... ...+..+++|+.|+|++|......... ...+++|+.|.+
T Consensus 98 ~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~l~~N~l~~~~~~~-~~~l~~L~~L~l 155 (208)
T 2o6s_A 98 KLTQLKELALNTNQLQSLP-DGVFDKLTQLKDLRLYQNQLKSVPDGV-FDRLTSLQYIWL 155 (208)
T ss_dssp TCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCSCCCTTT-TTTCTTCCEEEC
T ss_pred CccCCCEEEcCCCcCcccC-HhHhccCCcCCEEECCCCccceeCHHH-hccCCCccEEEe
Confidence 4555566666555544211 112334556666666555433222211 133455555554
No 41
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=98.16 E-value=1.7e-06 Score=72.77 Aligned_cols=101 Identities=17% Similarity=0.142 Sum_probs=72.2
Q ss_pred hcCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHHH
Q 028616 11 GRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVL 90 (206)
Q Consensus 11 ~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l~ 90 (206)
..+++|+.|+|++|. ++. +.. ...+++|+.|.++.+.+.. +.. ...+++|++|+|++|.++.-..
T Consensus 104 ~~l~~L~~L~l~~n~-l~~--~~~-l~~l~~L~~L~l~~n~l~~----~~~------l~~l~~L~~L~l~~n~l~~~~~- 168 (308)
T 1h6u_A 104 AGLQSIKTLDLTSTQ-ITD--VTP-LAGLSNLQVLYLDLNQITN----ISP------LAGLTNLQYLSIGNAQVSDLTP- 168 (308)
T ss_dssp TTCTTCCEEECTTSC-CCC--CGG-GTTCTTCCEEECCSSCCCC----CGG------GGGCTTCCEEECCSSCCCCCGG-
T ss_pred cCCCCCCEEECCCCC-CCC--chh-hcCCCCCCEEECCCCccCc----Ccc------ccCCCCccEEEccCCcCCCChh-
Confidence 468999999999984 553 233 4568999999998765421 111 3488999999999998876332
Q ss_pred HHHhCCCCccEEeeeCCCCCCCChHHHHhcCCCCceeCCCC
Q 028616 91 KILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPFV 131 (206)
Q Consensus 91 ~il~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~~~ 131 (206)
+..+++|+.|+|++|....... ...+++|+.|.+..
T Consensus 169 --l~~l~~L~~L~l~~n~l~~~~~---l~~l~~L~~L~L~~ 204 (308)
T 1h6u_A 169 --LANLSKLTTLKADDNKISDISP---LASLPNLIEVHLKN 204 (308)
T ss_dssp --GTTCTTCCEEECCSSCCCCCGG---GGGCTTCCEEECTT
T ss_pred --hcCCCCCCEEECCCCccCcChh---hcCCCCCCEEEccC
Confidence 6789999999999987653332 35667777776643
No 42
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.16 E-value=2.5e-06 Score=71.23 Aligned_cols=36 Identities=25% Similarity=0.236 Sum_probs=15.0
Q ss_pred cCCCCcEEEccCCcCCHHHHHHHHhCCCCccEEeeeCCC
Q 028616 70 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCW 108 (206)
Q Consensus 70 ~~p~Lk~L~L~~~~it~~~l~~il~~c~~Le~LdL~~C~ 108 (206)
.+++|++|+|++|.|+...- +..+++|+.|+|++|.
T Consensus 154 ~l~~L~~L~L~~N~l~~~~~---l~~l~~L~~L~L~~N~ 189 (291)
T 1h6t_A 154 RLTKLDTLSLEDNQISDIVP---LAGLTKLQNLYLSKNH 189 (291)
T ss_dssp GCTTCSEEECCSSCCCCCGG---GTTCTTCCEEECCSSC
T ss_pred cCCCCCEEEccCCccccchh---hcCCCccCEEECCCCc
Confidence 33444444444444333211 3344444444444443
No 43
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=98.16 E-value=2.5e-06 Score=71.23 Aligned_cols=55 Identities=20% Similarity=0.196 Sum_probs=29.8
Q ss_pred cCCCCcEEEccCCcCCHHHHHHHHhCCCCccEEeeeCCCCCCCChHHHHhcCCCCceeCCC
Q 028616 70 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPF 130 (206)
Q Consensus 70 ~~p~Lk~L~L~~~~it~~~l~~il~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~~ 130 (206)
.+++|++|+|++|.++.- ..+..+++|+.|+|++|....... ...+++|+.|.+.
T Consensus 132 ~l~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~L~~N~l~~~~~---l~~l~~L~~L~L~ 186 (291)
T 1h6t_A 132 HLPQLESLYLGNNKITDI---TVLSRLTKLDTLSLEDNQISDIVP---LAGLTKLQNLYLS 186 (291)
T ss_dssp GCTTCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCCCGG---GTTCTTCCEEECC
T ss_pred CCCCCCEEEccCCcCCcc---hhhccCCCCCEEEccCCccccchh---hcCCCccCEEECC
Confidence 455666666666655443 234456666666666664432222 3456666666653
No 44
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.15 E-value=2.5e-07 Score=76.32 Aligned_cols=38 Identities=16% Similarity=0.065 Sum_probs=20.2
Q ss_pred cCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeeccc
Q 028616 12 RLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHP 51 (206)
Q Consensus 12 ~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~ 51 (206)
.+++|+.|+|++|. ++.... .....+++|+.|.++.+.
T Consensus 83 ~l~~L~~L~L~~n~-l~~~~~-~~~~~l~~L~~L~L~~n~ 120 (272)
T 3rfs_A 83 ELTNLTYLILTGNQ-LQSLPN-GVFDKLTNLKELVLVENQ 120 (272)
T ss_dssp TCTTCCEEECTTSC-CCCCCT-TTTTTCTTCCEEECTTSC
T ss_pred CCCCCCEEECCCCc-cCccCh-hHhcCCcCCCEEECCCCc
Confidence 46677777777663 442111 112345666666665443
No 45
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=98.15 E-value=3.4e-07 Score=75.62 Aligned_cols=60 Identities=15% Similarity=0.022 Sum_probs=31.5
Q ss_pred cCCCCcEEEccCCcCCHHHHHHHHhCCCCccEEeeeCCCCCCCChHHHHhcCCCCceeCCCC
Q 028616 70 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPFV 131 (206)
Q Consensus 70 ~~p~Lk~L~L~~~~it~~~l~~il~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~~~ 131 (206)
.+++|++|+|++|.++.... ..+..+++|+.|+|++|.........+ ..+++|+.|.+..
T Consensus 175 ~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~l~~ 234 (285)
T 1ozn_A 175 GLHSLDRLLLHQNRVAHVHP-HAFRDLGRLMTLYLFANNLSALPTEAL-APLRALQYLRLND 234 (285)
T ss_dssp TCTTCCEEECCSSCCCEECT-TTTTTCTTCCEEECCSSCCSCCCHHHH-TTCTTCCEEECCS
T ss_pred CccccCEEECCCCcccccCH-hHccCcccccEeeCCCCcCCcCCHHHc-ccCcccCEEeccC
Confidence 45566666666665544321 122356666666666665443333222 4566666666643
No 46
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=98.15 E-value=1.1e-06 Score=73.80 Aligned_cols=112 Identities=14% Similarity=-0.063 Sum_probs=74.5
Q ss_pred hcCCCCcEEEeccCCCCCHH----HHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCH
Q 028616 11 GRLSAVTFLDLSYCSKIGAP----ALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVIST 86 (206)
Q Consensus 11 ~~~~~L~~L~Ls~c~~it~~----~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~ 86 (206)
..+++|+.|+|++|. ++.. ....+. .+++|+.|.|+.+.+.... . . ....+++|++|+|++|+++.
T Consensus 114 ~~~~~L~~L~Ls~n~-i~~~~~~~~~~~~~-~~~~L~~L~Ls~n~l~~~~----~---~-~~~~l~~L~~L~Ls~N~l~~ 183 (310)
T 4glp_A 114 ATGLALSSLRLRNVS-WATGRSWLAELQQW-LKPGLKVLSIAQAHSPAFS----C---E-QVRAFPALTSLDLSDNPGLG 183 (310)
T ss_dssp CCCBCCSSCEEESCC-CSSTTSSHHHHHTT-BCSCCCEEEEECCSSCCCC----T---T-SCCCCTTCCEEECCSCTTCH
T ss_pred ccCCCCCEEEeeccc-ccchhhhhHHHHhh-hccCCCEEEeeCCCcchhh----H---H-HhccCCCCCEEECCCCCCcc
Confidence 468999999999974 5531 122333 6899999999877552111 0 1 12378999999999999665
Q ss_pred H-HHHHH--HhCCCCccEEeeeCCCCCCCChH--HHHhcCCCCceeCCCCc
Q 028616 87 E-IVLKI--LSSCALLEFLDLRGCWDVKLDDK--FMKGNFPNLKVLGPFVM 132 (206)
Q Consensus 87 ~-~l~~i--l~~c~~Le~LdL~~C~~v~~~~~--~l~~~~~~L~~L~~~~~ 132 (206)
. ++... ...+++|++|+|++|........ .+...+++|+.|.+..-
T Consensus 184 ~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N 234 (310)
T 4glp_A 184 ERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHN 234 (310)
T ss_dssp HHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTS
T ss_pred chhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCC
Confidence 4 33222 25789999999999976421111 13367789999988653
No 47
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=98.14 E-value=4.4e-07 Score=77.15 Aligned_cols=56 Identities=18% Similarity=0.191 Sum_probs=29.2
Q ss_pred CCCCcEEEccCCcCCHHHHHHHHhCCCCccEEeeeCCCCCCCChHHHHhcCCCCceeCCC
Q 028616 71 MPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPF 130 (206)
Q Consensus 71 ~p~Lk~L~L~~~~it~~~l~~il~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~~ 130 (206)
+++|++|+|++|.|+ .+-.-+.++++|+.|+|++|....+... ...+++|+.|.+.
T Consensus 182 l~~L~~L~L~~n~l~--~lp~~l~~l~~L~~L~L~~N~l~~l~~~--l~~l~~L~~L~Ls 237 (328)
T 4fcg_A 182 LVNLQSLRLEWTGIR--SLPASIANLQNLKSLKIRNSPLSALGPA--IHHLPKLEELDLR 237 (328)
T ss_dssp STTCCEEEEEEECCC--CCCGGGGGCTTCCEEEEESSCCCCCCGG--GGGCTTCCEEECT
T ss_pred CCCCCEEECcCCCcC--cchHhhcCCCCCCEEEccCCCCCcCchh--hccCCCCCEEECc
Confidence 566666666666554 2222244566666666666654432221 2345566666553
No 48
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.13 E-value=4.3e-07 Score=73.29 Aligned_cols=58 Identities=16% Similarity=0.094 Sum_probs=31.8
Q ss_pred cCCCCcEEEccCCcCCHHHHHHHHhCCCCccEEeeeCCCCCCCChHHHHhcCCCCceeCCC
Q 028616 70 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPF 130 (206)
Q Consensus 70 ~~p~Lk~L~L~~~~it~~~l~~il~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~~ 130 (206)
.+++|++|+|++|+|+. +-.-+.++++|+.|+|++|....+.... ...+++|+.|.+.
T Consensus 110 ~l~~L~~L~Ls~N~l~~--lp~~~~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~l~ 167 (229)
T 3e6j_A 110 RLVHLKELFMCCNKLTE--LPRGIERLTHLTHLALDQNQLKSIPHGA-FDRLSSLTHAYLF 167 (229)
T ss_dssp TCTTCCEEECCSSCCCS--CCTTGGGCTTCSEEECCSSCCCCCCTTT-TTTCTTCCEEECT
T ss_pred cchhhCeEeccCCcccc--cCcccccCCCCCEEECCCCcCCccCHHH-HhCCCCCCEEEee
Confidence 55667777776666552 2122356677777777766544333222 2445666666554
No 49
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.13 E-value=6.7e-07 Score=71.76 Aligned_cols=108 Identities=14% Similarity=0.053 Sum_probs=54.4
Q ss_pred cCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHHHH
Q 028616 12 RLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLK 91 (206)
Q Consensus 12 ~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l~~ 91 (206)
.+++|+.|+|++|. ++.....+ ...+++|+.|.|+.+.+.. +.. .+...+++|++|+|++|+|+.... .
T Consensus 54 ~l~~L~~L~Ls~N~-i~~~~~~~-~~~l~~L~~L~Ls~N~l~~----l~~----~~f~~l~~L~~L~L~~N~l~~~~~-~ 122 (220)
T 2v9t_B 54 PYKKLRRIDLSNNQ-ISELAPDA-FQGLRSLNSLVLYGNKITE----LPK----SLFEGLFSLQLLLLNANKINCLRV-D 122 (220)
T ss_dssp TCTTCCEEECCSSC-CCEECTTT-TTTCSSCCEEECCSSCCCC----CCT----TTTTTCTTCCEEECCSSCCCCCCT-T
T ss_pred CCCCCCEEECCCCc-CCCcCHHH-hhCCcCCCEEECCCCcCCc----cCH----hHccCCCCCCEEECCCCCCCEeCH-H
Confidence 35666666666652 33211111 1334666666666554321 111 112356777777777776554221 1
Q ss_pred HHhCCCCccEEeeeCCCCCCCChHHHHhcCCCCceeCCCC
Q 028616 92 ILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPFV 131 (206)
Q Consensus 92 il~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~~~ 131 (206)
.+.++++|+.|+|++|.........+ ..+++|+.|.+..
T Consensus 123 ~~~~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~L~~ 161 (220)
T 2v9t_B 123 AFQDLHNLNLLSLYDNKLQTIAKGTF-SPLRAIQTMHLAQ 161 (220)
T ss_dssp TTTTCTTCCEEECCSSCCSCCCTTTT-TTCTTCCEEECCS
T ss_pred HcCCCCCCCEEECCCCcCCEECHHHH-hCCCCCCEEEeCC
Confidence 23456777777777776543333222 3456666666543
No 50
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.13 E-value=2.4e-07 Score=75.45 Aligned_cols=38 Identities=18% Similarity=0.204 Sum_probs=18.4
Q ss_pred cCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeeccc
Q 028616 12 RLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHP 51 (206)
Q Consensus 12 ~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~ 51 (206)
.+++|+.|+|++|. ++.... .....+++|+.|.|+.+.
T Consensus 57 ~l~~L~~L~L~~n~-l~~~~~-~~~~~l~~L~~L~L~~n~ 94 (251)
T 3m19_A 57 GLTKLTWLNLDYNQ-LQTLSA-GVFDDLTELGTLGLANNQ 94 (251)
T ss_dssp TCTTCCEEECTTSC-CCCCCT-TTTTTCTTCCEEECTTSC
T ss_pred CcccCCEEECCCCc-CCccCH-hHhccCCcCCEEECCCCc
Confidence 45666666666652 332111 111334566666665443
No 51
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=98.12 E-value=4e-07 Score=75.11 Aligned_cols=85 Identities=18% Similarity=0.208 Sum_probs=43.6
Q ss_pred hcCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHHH
Q 028616 11 GRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVL 90 (206)
Q Consensus 11 ~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l~ 90 (206)
..+++|+.|+|++|. ++. +..+ ..+++|+.|.++.+.+.... . .+...+++|++|+|++|.++... .
T Consensus 60 ~~l~~L~~L~l~~n~-l~~--~~~l-~~l~~L~~L~L~~n~l~~~~----~----~~~~~l~~L~~L~L~~n~l~~~~-~ 126 (272)
T 3rfs_A 60 QYLPNVRYLALGGNK-LHD--ISAL-KELTNLTYLILTGNQLQSLP----N----GVFDKLTNLKELVLVENQLQSLP-D 126 (272)
T ss_dssp GGCTTCCEEECTTSC-CCC--CGGG-TTCTTCCEEECTTSCCCCCC----T----TTTTTCTTCCEEECTTSCCCCCC-T
T ss_pred ccCCCCcEEECCCCC-CCC--chhh-cCCCCCCEEECCCCccCccC----h----hHhcCCcCCCEEECCCCcCCccC-H
Confidence 357888888888764 442 2223 45678888888765442110 0 01124455555555555544211 1
Q ss_pred HHHhCCCCccEEeeeCCC
Q 028616 91 KILSSCALLEFLDLRGCW 108 (206)
Q Consensus 91 ~il~~c~~Le~LdL~~C~ 108 (206)
..+.++++|+.|+|++|.
T Consensus 127 ~~~~~l~~L~~L~L~~n~ 144 (272)
T 3rfs_A 127 GVFDKLTNLTYLNLAHNQ 144 (272)
T ss_dssp TTTTTCTTCCEEECCSSC
T ss_pred HHhccCCCCCEEECCCCc
Confidence 112345555555555553
No 52
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=98.11 E-value=3e-07 Score=79.32 Aligned_cols=109 Identities=15% Similarity=0.109 Sum_probs=56.5
Q ss_pred HhcCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHH
Q 028616 10 AGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIV 89 (206)
Q Consensus 10 ~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l 89 (206)
...+++|++|+|++|. ++.....++ ..+++|+.|.|+.+.+... .. .+ ...+++|++|+|++|.++.-.
T Consensus 65 ~~~l~~L~~L~L~~n~-i~~~~~~~~-~~l~~L~~L~L~~n~l~~~----~~---~~-~~~l~~L~~L~L~~n~l~~l~- 133 (390)
T 3o6n_A 65 LDSFRQVELLNLNDLQ-IEEIDTYAF-AYAHTIQKLYMGFNAIRYL----PP---HV-FQNVPLLTVLVLERNDLSSLP- 133 (390)
T ss_dssp HHHCCCCSEEECTTSC-CCEECTTTT-TTCTTCCEEECCSSCCCCC----CT---TT-TTTCTTCCEEECCSSCCCCCC-
T ss_pred hcccccCcEEECCCCc-ccccChhhc-cCCCCcCEEECCCCCCCcC----CH---HH-hcCCCCCCEEECCCCccCcCC-
Confidence 3457777777777763 443211122 3467777777765543211 00 11 125667777777777655211
Q ss_pred HHHHhCCCCccEEeeeCCCCCCCChHHHHhcCCCCceeCCC
Q 028616 90 LKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPF 130 (206)
Q Consensus 90 ~~il~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~~ 130 (206)
..++.++++|++|+|++|.........+ ..+++|+.|.+.
T Consensus 134 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~l~ 173 (390)
T 3o6n_A 134 RGIFHNTPKLTTLSMSNNNLERIEDDTF-QATTSLQNLQLS 173 (390)
T ss_dssp TTTTTTCTTCCEEECCSSCCCBCCTTTT-SSCTTCCEEECC
T ss_pred HHHhcCCCCCcEEECCCCccCccChhhc-cCCCCCCEEECC
Confidence 1223456677777777665443222222 345566666553
No 53
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.11 E-value=2.9e-06 Score=78.38 Aligned_cols=56 Identities=27% Similarity=0.265 Sum_probs=34.0
Q ss_pred cCCCCcEEEccCCcCCHHHHHHHHhCCCCccEEeeeCCCCCCCChHHHHhcCCCCceeCCCC
Q 028616 70 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPFV 131 (206)
Q Consensus 70 ~~p~Lk~L~L~~~~it~~~l~~il~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~~~ 131 (206)
.+++|++|+|++|.|+...- +..|++|+.|+|++|....+ .. ...+++|+.|.+..
T Consensus 151 ~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~N~i~~l--~~-l~~l~~L~~L~L~~ 206 (605)
T 1m9s_A 151 RLTKLDTLSLEDNQISDIVP---LAGLTKLQNLYLSKNHISDL--RA-LAGLKNLDVLELFS 206 (605)
T ss_dssp SCTTCSEEECCSSCCCCCGG---GTTCTTCCEEECCSSCCCBC--GG-GTTCTTCSEEECCS
T ss_pred ccCCCCEEECcCCcCCCchh---hccCCCCCEEECcCCCCCCC--hH-HccCCCCCEEEccC
Confidence 66777777777776554322 55677777777777754422 11 25567777776643
No 54
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.10 E-value=8.5e-08 Score=80.02 Aligned_cols=108 Identities=18% Similarity=0.111 Sum_probs=52.2
Q ss_pred hcCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHHH
Q 028616 11 GRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVL 90 (206)
Q Consensus 11 ~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l~ 90 (206)
..+++|+.|+|++|. ++... ......+++|+.|.++.+.+.. .........+++|++|+|++|.|+....
T Consensus 123 ~~l~~L~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~l~~n~l~~-------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~- 192 (306)
T 2z66_A 123 LSLRNLIYLDISHTH-TRVAF-NGIFNGLSSLEVLKMAGNSFQE-------NFLPDIFTELRNLTFLDLSQCQLEQLSP- 192 (306)
T ss_dssp TTCTTCCEEECTTSC-CEECS-TTTTTTCTTCCEEECTTCEEGG-------GEECSCCTTCTTCCEEECTTSCCCEECT-
T ss_pred hhccCCCEEECCCCc-CCccc-hhhcccCcCCCEEECCCCcccc-------ccchhHHhhCcCCCEEECCCCCcCCcCH-
Confidence 457888888888763 33211 1122346778888776543311 0000011245566666666665544211
Q ss_pred HHHhCCCCccEEeeeCCCCCCCChHHHHhcCCCCceeCC
Q 028616 91 KILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP 129 (206)
Q Consensus 91 ~il~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~ 129 (206)
..+.++++|+.|+|++|.........+ ..+++|+.|.+
T Consensus 193 ~~~~~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~L 230 (306)
T 2z66_A 193 TAFNSLSSLQVLNMSHNNFFSLDTFPY-KCLNSLQVLDY 230 (306)
T ss_dssp TTTTTCTTCCEEECTTSCCSBCCSGGG-TTCTTCCEEEC
T ss_pred HHhcCCCCCCEEECCCCccCccChhhc-cCcccCCEeEC
Confidence 112345566666666555432222111 34455555554
No 55
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.10 E-value=2.6e-07 Score=74.20 Aligned_cols=109 Identities=12% Similarity=0.059 Sum_probs=60.6
Q ss_pred hcCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHHH
Q 028616 11 GRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVL 90 (206)
Q Consensus 11 ~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l~ 90 (206)
..+++|+.|+|++|. |+...-. ....+++|+.|.|+.+.+.. +... ....+++|++|+|++|+|+...-
T Consensus 54 ~~l~~L~~L~L~~N~-i~~i~~~-~~~~l~~L~~L~Ls~N~l~~----~~~~----~~~~l~~L~~L~Ls~N~l~~~~~- 122 (220)
T 2v70_A 54 KKLPQLRKINFSNNK-ITDIEEG-AFEGASGVNEILLTSNRLEN----VQHK----MFKGLESLKTLMLRSNRITCVGN- 122 (220)
T ss_dssp GGCTTCCEEECCSSC-CCEECTT-TTTTCTTCCEEECCSSCCCC----CCGG----GGTTCSSCCEEECTTSCCCCBCT-
T ss_pred ccCCCCCEEECCCCc-CCEECHH-HhCCCCCCCEEECCCCccCc----cCHh----HhcCCcCCCEEECCCCcCCeECH-
Confidence 456777777777753 4421111 12345777777776554421 1111 12367788888888877654211
Q ss_pred HHHhCCCCccEEeeeCCCCCCCChHHHHhcCCCCceeCCCC
Q 028616 91 KILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPFV 131 (206)
Q Consensus 91 ~il~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~~~ 131 (206)
..+.++++|+.|+|++|.........+ ..+++|+.|.+..
T Consensus 123 ~~~~~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~L~~ 162 (220)
T 2v70_A 123 DSFIGLSSVRLLSLYDNQITTVAPGAF-DTLHSLSTLNLLA 162 (220)
T ss_dssp TSSTTCTTCSEEECTTSCCCCBCTTTT-TTCTTCCEEECCS
T ss_pred hHcCCCccCCEEECCCCcCCEECHHHh-cCCCCCCEEEecC
Confidence 123467788888888776553332222 4566777776643
No 56
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=98.09 E-value=4.5e-07 Score=73.85 Aligned_cols=109 Identities=16% Similarity=0.151 Sum_probs=72.3
Q ss_pred hcCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHHH
Q 028616 11 GRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVL 90 (206)
Q Consensus 11 ~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l~ 90 (206)
..+++|+.|+|++|. ++.... .....+++|+.|.|+.+.+... .. .+...+++|++|+|++|.|+....
T Consensus 80 ~~l~~L~~L~L~~n~-l~~~~~-~~~~~l~~L~~L~L~~N~l~~~----~~----~~~~~l~~L~~L~Ls~N~l~~~~~- 148 (251)
T 3m19_A 80 DDLTELGTLGLANNQ-LASLPL-GVFDHLTQLDKLYLGGNQLKSL----PS----GVFDRLTKLKELRLNTNQLQSIPA- 148 (251)
T ss_dssp TTCTTCCEEECTTSC-CCCCCT-TTTTTCTTCCEEECCSSCCCCC----CT----TTTTTCTTCCEEECCSSCCCCCCT-
T ss_pred ccCCcCCEEECCCCc-ccccCh-hHhcccCCCCEEEcCCCcCCCc----Ch----hHhccCCcccEEECcCCcCCccCH-
Confidence 468999999999974 552211 2235679999999987755311 11 112367899999999998764221
Q ss_pred HHHhCCCCccEEeeeCCCCCCCChHHHHhcCCCCceeCCCC
Q 028616 91 KILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPFV 131 (206)
Q Consensus 91 ~il~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~~~ 131 (206)
..+.++++|+.|+|++|.........+ ..+++|+.|.+..
T Consensus 149 ~~~~~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~l~~ 188 (251)
T 3m19_A 149 GAFDKLTNLQTLSLSTNQLQSVPHGAF-DRLGKLQTITLFG 188 (251)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTT-TTCTTCCEEECCS
T ss_pred HHcCcCcCCCEEECCCCcCCccCHHHH-hCCCCCCEEEeeC
Confidence 234578999999999987654443233 5677888887754
No 57
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=98.09 E-value=6.7e-08 Score=80.65 Aligned_cols=61 Identities=25% Similarity=0.328 Sum_probs=36.5
Q ss_pred cCCCCcEEEccCCcCCHHHHHHHHhCCCCccEEeeeCCCCCCCChHHHHhcCCCCceeCCCC
Q 028616 70 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPFV 131 (206)
Q Consensus 70 ~~p~Lk~L~L~~~~it~~~l~~il~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~~~ 131 (206)
.+++|++|+|++|.++...+...+..+++|+.|+|++|.........+ ..+++|+.|.+..
T Consensus 148 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~L~~ 208 (306)
T 2z66_A 148 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF-NSLSSLQVLNMSH 208 (306)
T ss_dssp TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTT-TTCTTCCEEECTT
T ss_pred cCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHh-cCCCCCCEEECCC
Confidence 567777777777766553333445567777777777775442222222 4566777776643
No 58
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.09 E-value=1.4e-06 Score=79.82 Aligned_cols=101 Identities=17% Similarity=0.054 Sum_probs=62.0
Q ss_pred CCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHHHHHH
Q 028616 14 SAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKIL 93 (206)
Q Consensus 14 ~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l~~il 93 (206)
..|+.|+|++|. ++. +.. ...+++|+.|.|+.+.+. .+.. .+ ..+++|++|+|++|.|+. +- -+
T Consensus 441 ~~L~~L~Ls~n~-l~~--lp~-~~~l~~L~~L~Ls~N~l~----~lp~----~~-~~l~~L~~L~Ls~N~l~~--lp-~l 504 (567)
T 1dce_A 441 ADVRVLHLAHKD-LTV--LCH-LEQLLLVTHLDLSHNRLR----ALPP----AL-AALRCLEVLQASDNALEN--VD-GV 504 (567)
T ss_dssp TTCSEEECTTSC-CSS--CCC-GGGGTTCCEEECCSSCCC----CCCG----GG-GGCTTCCEEECCSSCCCC--CG-GG
T ss_pred cCceEEEecCCC-CCC--CcC-ccccccCcEeecCccccc----ccch----hh-hcCCCCCEEECCCCCCCC--Cc-cc
Confidence 358888888873 442 333 345678888888766543 1111 12 367788888888877665 22 35
Q ss_pred hCCCCccEEeeeCCCCCCCC-hHHHHhcCCCCceeCCCC
Q 028616 94 SSCALLEFLDLRGCWDVKLD-DKFMKGNFPNLKVLGPFV 131 (206)
Q Consensus 94 ~~c~~Le~LdL~~C~~v~~~-~~~l~~~~~~L~~L~~~~ 131 (206)
.++++|+.|+|++|...... ...+ ..+++|+.|.+..
T Consensus 505 ~~l~~L~~L~Ls~N~l~~~~~p~~l-~~l~~L~~L~L~~ 542 (567)
T 1dce_A 505 ANLPRLQELLLCNNRLQQSAAIQPL-VSCPRLVLLNLQG 542 (567)
T ss_dssp TTCSSCCEEECCSSCCCSSSTTGGG-GGCTTCCEEECTT
T ss_pred CCCCCCcEEECCCCCCCCCCCcHHH-hcCCCCCEEEecC
Confidence 56778888888777655332 2222 4577777777644
No 59
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=98.09 E-value=2.3e-06 Score=79.03 Aligned_cols=56 Identities=20% Similarity=0.183 Sum_probs=38.3
Q ss_pred cCCCCcEEEccCCcCCHHHHHHHHhCCCCccEEeeeCCCCCCCChHHHHhcCCCCceeCCCC
Q 028616 70 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPFV 131 (206)
Q Consensus 70 ~~p~Lk~L~L~~~~it~~~l~~il~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~~~ 131 (206)
.+++|+.|+|++|.|+.. ..+..|++|+.|+|++|....... ...+++|+.|.+..
T Consensus 129 ~l~~L~~L~Ls~N~l~~l---~~l~~l~~L~~L~Ls~N~l~~~~~---l~~l~~L~~L~Ls~ 184 (605)
T 1m9s_A 129 HLPQLESLYLGNNKITDI---TVLSRLTKLDTLSLEDNQISDIVP---LAGLTKLQNLYLSK 184 (605)
T ss_dssp GCTTCSEEECCSSCCCCC---GGGGSCTTCSEEECCSSCCCCCGG---GTTCTTCCEEECCS
T ss_pred CCCccCEEECCCCccCCc---hhhcccCCCCEEECcCCcCCCchh---hccCCCCCEEECcC
Confidence 677788888887776653 345677888888888876543322 35677888877744
No 60
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=98.09 E-value=2.6e-07 Score=76.37 Aligned_cols=37 Identities=19% Similarity=0.011 Sum_probs=17.6
Q ss_pred cCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecc
Q 028616 12 RLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMH 50 (206)
Q Consensus 12 ~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~ 50 (206)
.+++|+.|+|++| .++.....++ ..+++|+.|.++.+
T Consensus 54 ~~~~L~~L~l~~n-~l~~~~~~~~-~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 54 ACRNLTILWLHSN-VLARIDAAAF-TGLALLEQLDLSDN 90 (285)
T ss_dssp TCTTCCEEECCSS-CCCEECTTTT-TTCTTCCEEECCSC
T ss_pred cCCCCCEEECCCC-ccceeCHhhc-CCccCCCEEeCCCC
Confidence 4566666666665 2332111111 23456666666544
No 61
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.09 E-value=4e-07 Score=71.85 Aligned_cols=107 Identities=17% Similarity=0.156 Sum_probs=73.2
Q ss_pred CCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHHHHH
Q 028616 13 LSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKI 92 (206)
Q Consensus 13 ~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l~~i 92 (206)
.++|+.|+|++|. ++... ......+++|+.|.++.+.+.. +.. .+...+++|++|+|++|.|+... ...
T Consensus 27 ~~~l~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~l~~n~l~~----~~~----~~~~~l~~L~~L~Ls~n~l~~~~-~~~ 95 (208)
T 2o6s_A 27 PAQTTYLDLETNS-LKSLP-NGVFDELTSLTQLYLGGNKLQS----LPN----GVFNKLTSLTYLNLSTNQLQSLP-NGV 95 (208)
T ss_dssp CTTCSEEECCSSC-CCCCC-TTTTTTCTTCSEEECCSSCCCC----CCT----TTTTTCTTCCEEECCSSCCCCCC-TTT
T ss_pred CCCCcEEEcCCCc-cCcCC-hhhhcccccCcEEECCCCccCc----cCh----hhcCCCCCcCEEECCCCcCCccC-HhH
Confidence 5689999999974 55221 1223568999999998765531 111 12247899999999999877321 223
Q ss_pred HhCCCCccEEeeeCCCCCCCChHHHHhcCCCCceeCCCC
Q 028616 93 LSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPFV 131 (206)
Q Consensus 93 l~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~~~ 131 (206)
+.++++|++|+|++|......... ...+++|+.|.+..
T Consensus 96 ~~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~l~~ 133 (208)
T 2o6s_A 96 FDKLTQLKELALNTNQLQSLPDGV-FDKLTQLKDLRLYQ 133 (208)
T ss_dssp TTTCTTCCEEECCSSCCCCCCTTT-TTTCTTCCEEECCS
T ss_pred hcCccCCCEEEcCCCcCcccCHhH-hccCCcCCEEECCC
Confidence 568999999999998755433322 25678899988854
No 62
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.08 E-value=3.9e-07 Score=74.96 Aligned_cols=59 Identities=17% Similarity=0.187 Sum_probs=27.4
Q ss_pred cCCCCcEEEccCCcCCHHHHHHHHhCCCCccEEeeeCCCCCCCChHHHHhcCCCCceeCCC
Q 028616 70 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPF 130 (206)
Q Consensus 70 ~~p~Lk~L~L~~~~it~~~l~~il~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~~ 130 (206)
.+++|++|+|++|.|+.... ..+..+++|+.|+|++|.........+ ..+++|+.|.+.
T Consensus 131 ~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~ 189 (270)
T 2o6q_A 131 SLTKLTYLSLGYNELQSLPK-GVFDKLTSLKELRLYNNQLKRVPEGAF-DKLTELKTLKLD 189 (270)
T ss_dssp TCTTCCEEECCSSCCCCCCT-TTTTTCTTCCEEECCSSCCSCCCTTTT-TTCTTCCEEECC
T ss_pred cCcCCCEEECCCCcCCccCH-hHccCCcccceeEecCCcCcEeChhHh-ccCCCcCEEECC
Confidence 44555555555555442111 113345666666666554332222211 345556665553
No 63
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=98.07 E-value=8.8e-07 Score=75.28 Aligned_cols=87 Identities=21% Similarity=0.258 Sum_probs=38.9
Q ss_pred cCCCCcEEEeccCCCCCHHHHHHH--------HhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCc
Q 028616 12 RLSAVTFLDLSYCSKIGAPALEAI--------GKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHV 83 (206)
Q Consensus 12 ~~~~L~~L~Ls~c~~it~~~l~~l--------~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~ 83 (206)
.+++|+.|+|++|..++.- -..+ ...+++|+.|.|+.+.+. .+.. . ...+++|++|+|++|.
T Consensus 148 ~l~~L~~L~L~~n~~~~~~-p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~----~lp~----~-l~~l~~L~~L~L~~N~ 217 (328)
T 4fcg_A 148 SLNRLRELSIRACPELTEL-PEPLASTDASGEHQGLVNLQSLRLEWTGIR----SLPA----S-IANLQNLKSLKIRNSP 217 (328)
T ss_dssp GCTTCCEEEEEEETTCCCC-CSCSEEEC-CCCEEESTTCCEEEEEEECCC----CCCG----G-GGGCTTCCEEEEESSC
T ss_pred cCcCCCEEECCCCCCcccc-ChhHhhccchhhhccCCCCCEEECcCCCcC----cchH----h-hcCCCCCCEEEccCCC
Confidence 4666666666665433210 0001 012556666666544332 1111 0 1245555555555555
Q ss_pred CCHHHHHHHHhCCCCccEEeeeCCCCC
Q 028616 84 ISTEIVLKILSSCALLEFLDLRGCWDV 110 (206)
Q Consensus 84 it~~~l~~il~~c~~Le~LdL~~C~~v 110 (206)
++. +..-+..+++|+.|+|++|...
T Consensus 218 l~~--l~~~l~~l~~L~~L~Ls~n~~~ 242 (328)
T 4fcg_A 218 LSA--LGPAIHHLPKLEELDLRGCTAL 242 (328)
T ss_dssp CCC--CCGGGGGCTTCCEEECTTCTTC
T ss_pred CCc--CchhhccCCCCCEEECcCCcch
Confidence 442 1112344555555555555443
No 64
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=98.07 E-value=1.7e-07 Score=79.95 Aligned_cols=39 Identities=15% Similarity=0.062 Sum_probs=20.0
Q ss_pred cCCCCcEEEccCCcCCHHHHHHHHhCCCCccEEeeeCCC
Q 028616 70 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCW 108 (206)
Q Consensus 70 ~~p~Lk~L~L~~~~it~~~l~~il~~c~~Le~LdL~~C~ 108 (206)
.+++|++|+|++|+++.-.....+.++++|+.|++++|.
T Consensus 122 ~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~ 160 (353)
T 2z80_A 122 PLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMD 160 (353)
T ss_dssp TCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESS
T ss_pred CCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCc
Confidence 556666666666655421111123455666666666653
No 65
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.06 E-value=6.4e-07 Score=70.60 Aligned_cols=106 Identities=17% Similarity=0.098 Sum_probs=68.2
Q ss_pred CCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHHHHH
Q 028616 13 LSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKI 92 (206)
Q Consensus 13 ~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l~~i 92 (206)
.++|+.|+|++|. ++. +......+++|+.|.|+.+.+... .. .+ ...+++|++|+|++|+|+...-. .
T Consensus 30 ~~~l~~L~L~~n~-i~~--ip~~~~~l~~L~~L~Ls~N~i~~i----~~---~~-f~~l~~L~~L~Ls~N~l~~i~~~-~ 97 (193)
T 2wfh_A 30 PRDVTELYLDGNQ-FTL--VPKELSNYKHLTLIDLSNNRISTL----SN---QS-FSNMTQLLTLILSYNRLRCIPPR-T 97 (193)
T ss_dssp CTTCCEEECCSSC-CCS--CCGGGGGCTTCCEEECCSSCCCCC----CT---TT-TTTCTTCCEEECCSSCCCBCCTT-T
T ss_pred CCCCCEEECCCCc-Cch--hHHHhhcccCCCEEECCCCcCCEe----CH---hH-ccCCCCCCEEECCCCccCEeCHH-H
Confidence 4588999998873 552 222345678899999987655311 11 11 23678999999999886653221 2
Q ss_pred HhCCCCccEEeeeCCCCCCCChHHHHhcCCCCceeCCCC
Q 028616 93 LSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPFV 131 (206)
Q Consensus 93 l~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~~~ 131 (206)
+.++++|+.|+|+++....+....+ ..+++|+.|.+..
T Consensus 98 f~~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~L~~ 135 (193)
T 2wfh_A 98 FDGLKSLRLLSLHGNDISVVPEGAF-NDLSALSHLAIGA 135 (193)
T ss_dssp TTTCTTCCEEECCSSCCCBCCTTTT-TTCTTCCEEECCS
T ss_pred hCCCCCCCEEECCCCCCCeeChhhh-hcCccccEEEeCC
Confidence 4578899999998887654443322 4567788877754
No 66
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=98.06 E-value=4.1e-07 Score=79.65 Aligned_cols=60 Identities=17% Similarity=0.097 Sum_probs=32.9
Q ss_pred cCCCCcEEEccCCcCCHHHHHHHHhCCCCccEEeeeCCCCCCCChHHHHhcCCCCceeCCCC
Q 028616 70 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPFV 131 (206)
Q Consensus 70 ~~p~Lk~L~L~~~~it~~~l~~il~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~~~ 131 (206)
.+++|++|+|++|+|+..... .+.++++|+.|+|++|......... ...+++|+.|.+..
T Consensus 345 ~l~~L~~L~Ls~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~l~~ 404 (455)
T 3v47_A 345 NLDKLEVLDLSYNHIRALGDQ-SFLGLPNLKELALDTNQLKSVPDGI-FDRLTSLQKIWLHT 404 (455)
T ss_dssp TCTTCCEEECCSSCCCEECTT-TTTTCTTCCEEECCSSCCSCCCTTT-TTTCTTCCEEECCS
T ss_pred CcccCCEEECCCCcccccChh-hccccccccEEECCCCccccCCHhH-hccCCcccEEEccC
Confidence 566777777777665443211 2345677777777776544333222 24566666666643
No 67
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.05 E-value=8.4e-06 Score=67.09 Aligned_cols=106 Identities=18% Similarity=0.122 Sum_probs=53.0
Q ss_pred cCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCC--------------CCCCChHHHHHHHhcCCCCcEE
Q 028616 12 RLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTA--------------DKLSQDDEANAIASTMPKLKRL 77 (206)
Q Consensus 12 ~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~--------------g~~v~d~~~~~ia~~~p~Lk~L 77 (206)
.+++|+.|+|++|. ++.- .. ...+++|+.|.++.+.+... +..++.- .. ...+++|++|
T Consensus 61 ~l~~L~~L~L~~N~-i~~~--~~-l~~l~~L~~L~L~~N~l~~l~~~~~~~L~~L~L~~N~l~~~--~~-l~~l~~L~~L 133 (263)
T 1xeu_A 61 FFTNLKELHLSHNQ-ISDL--SP-LKDLTKLEELSVNRNRLKNLNGIPSACLSRLFLDNNELRDT--DS-LIHLKNLEIL 133 (263)
T ss_dssp GCTTCCEEECCSSC-CCCC--GG-GTTCSSCCEEECCSSCCSCCTTCCCSSCCEEECCSSCCSBS--GG-GTTCTTCCEE
T ss_pred hCCCCCEEECCCCc-cCCC--hh-hccCCCCCEEECCCCccCCcCccccCcccEEEccCCccCCC--hh-hcCcccccEE
Confidence 46666666666653 3321 11 34566677776665543210 0111110 11 2255666666
Q ss_pred EccCCcCCHHHHHHHHhCCCCccEEeeeCCCCCCCChHHHHhcCCCCceeCCC
Q 028616 78 EMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPF 130 (206)
Q Consensus 78 ~L~~~~it~~~l~~il~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~~ 130 (206)
+|++|+|+.-. .+..+++|+.|+|++|..... .....+++|+.|.+.
T Consensus 134 ~Ls~N~i~~~~---~l~~l~~L~~L~L~~N~i~~~---~~l~~l~~L~~L~l~ 180 (263)
T 1xeu_A 134 SIRNNKLKSIV---MLGFLSKLEVLDLHGNEITNT---GGLTRLKKVNWIDLT 180 (263)
T ss_dssp ECTTSCCCBCG---GGGGCTTCCEEECTTSCCCBC---TTSTTCCCCCEEEEE
T ss_pred ECCCCcCCCCh---HHccCCCCCEEECCCCcCcch---HHhccCCCCCEEeCC
Confidence 66666655432 345566666666666654422 112445666666553
No 68
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=98.05 E-value=1.9e-07 Score=83.68 Aligned_cols=39 Identities=18% Similarity=0.134 Sum_probs=22.9
Q ss_pred cCCCCcEEEccCCcCCHHHHHHHHhCCCCccEEeeeCCC
Q 028616 70 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCW 108 (206)
Q Consensus 70 ~~p~Lk~L~L~~~~it~~~l~~il~~c~~Le~LdL~~C~ 108 (206)
.+++|++|+|++|.++...+...+.++++|+.|++++|.
T Consensus 96 ~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~ 134 (549)
T 2z81_A 96 PLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVE 134 (549)
T ss_dssp TCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESS
T ss_pred cCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCc
Confidence 566667777766665543222234556666666666665
No 69
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=98.03 E-value=4.2e-07 Score=81.58 Aligned_cols=109 Identities=18% Similarity=0.132 Sum_probs=56.9
Q ss_pred hcCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHHH
Q 028616 11 GRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVL 90 (206)
Q Consensus 11 ~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l~ 90 (206)
..+++|++|+|++|. ++.....+ ...|++|+.|.|+.+.+... . ..++ ..+++|++|+|++|.++.-.-.
T Consensus 49 ~~l~~L~~L~Ls~n~-i~~i~~~~-~~~l~~L~~L~L~~n~l~~~----~---~~~~-~~l~~L~~L~L~~n~l~~l~~~ 118 (570)
T 2z63_A 49 FSFPELQVLDLSRCE-IQTIEDGA-YQSLSHLSTLILTGNPIQSL----A---LGAF-SGLSSLQKLVAVETNLASLENF 118 (570)
T ss_dssp TTCSSCCEEECTTCC-CCEECTTT-TTTCTTCCEEECTTCCCCEE----C---TTTT-TTCTTCCEEECTTSCCCCSTTC
T ss_pred hCCCCceEEECCCCc-CCccCccc-ccCchhCCEEeCcCCcCCcc----C---Hhhh-cCccccccccccccccccCCCc
Confidence 357788888888773 44321112 23567888888765543210 0 0111 2566777777776665442211
Q ss_pred HHHhCCCCccEEeeeCCCCCCCChHHHHhcCCCCceeCCC
Q 028616 91 KILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPF 130 (206)
Q Consensus 91 ~il~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~~ 130 (206)
. +.+|++|++|+|++|......-......+++|+.|.+.
T Consensus 119 ~-~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~ 157 (570)
T 2z63_A 119 P-IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 157 (570)
T ss_dssp S-CTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECT
T ss_pred c-ccccccccEEecCCCccceecChhhhcccCCCCEEeCc
Confidence 1 34667777777776654321111112446666666553
No 70
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.03 E-value=5.9e-07 Score=69.20 Aligned_cols=107 Identities=14% Similarity=0.095 Sum_probs=67.4
Q ss_pred CCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHHHHH
Q 028616 13 LSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKI 92 (206)
Q Consensus 13 ~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l~~i 92 (206)
.++|+.|+|++|. ++... ......+++|+.|.++.+.+.. +.. .....+++|++|+|++|.|+... ...
T Consensus 27 ~~~l~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~l~~n~l~~----~~~----~~~~~l~~L~~L~l~~N~l~~~~-~~~ 95 (177)
T 2o6r_A 27 PSSATRLELESNK-LQSLP-HGVFDKLTQLTKLSLSQNQIQS----LPD----GVFDKLTKLTILYLHENKLQSLP-NGV 95 (177)
T ss_dssp CTTCSEEECCSSC-CCCCC-TTTTTTCTTCSEEECCSSCCCC----CCT----TTTTTCTTCCEEECCSSCCCCCC-TTT
T ss_pred CCCCcEEEeCCCc-ccEeC-HHHhcCcccccEEECCCCcceE----eCh----hHccCCCccCEEECCCCCccccC-HHH
Confidence 4688999999874 44211 1122456889999987665431 111 11236789999999998876321 123
Q ss_pred HhCCCCccEEeeeCCCCCCCChHHHHhcCCCCceeCCCC
Q 028616 93 LSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPFV 131 (206)
Q Consensus 93 l~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~~~ 131 (206)
+..+++|+.|+|++|....+.... ...+++|+.|.+..
T Consensus 96 ~~~l~~L~~L~l~~N~l~~~~~~~-~~~l~~L~~L~l~~ 133 (177)
T 2o6r_A 96 FDKLTQLKELALDTNQLKSVPDGI-FDRLTSLQKIWLHT 133 (177)
T ss_dssp TTTCTTCCEEECCSSCCSCCCTTT-TTTCTTCCEEECCS
T ss_pred hhCCcccCEEECcCCcceEeCHHH-hcCCcccCEEEecC
Confidence 457889999999888655333322 24577888877744
No 71
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=98.03 E-value=5.4e-07 Score=74.15 Aligned_cols=61 Identities=15% Similarity=0.097 Sum_probs=43.7
Q ss_pred hcCCCCcEEEccCCcCCHHHHHHHHhCCCCccEEeeeCCCCCCCChHHHHhcCCCCceeCCCC
Q 028616 69 STMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPFV 131 (206)
Q Consensus 69 ~~~p~Lk~L~L~~~~it~~~l~~il~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~~~ 131 (206)
..+++|++|+|++|.|+.... ..+.++++|+.|+|++|......... ...+++|+.|.+..
T Consensus 154 ~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~l~~ 214 (270)
T 2o6q_A 154 DKLTSLKELRLYNNQLKRVPE-GAFDKLTELKTLKLDNNQLKRVPEGA-FDSLEKLKMLQLQE 214 (270)
T ss_dssp TTCTTCCEEECCSSCCSCCCT-TTTTTCTTCCEEECCSSCCSCCCTTT-TTTCTTCCEEECCS
T ss_pred cCCcccceeEecCCcCcEeCh-hHhccCCCcCEEECCCCcCCcCCHHH-hccccCCCEEEecC
Confidence 478999999999998765322 22457899999999999655434322 25678888887754
No 72
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=98.02 E-value=5.1e-07 Score=75.51 Aligned_cols=38 Identities=21% Similarity=0.146 Sum_probs=15.9
Q ss_pred cCCCCcEEEccCCcCCHHHHHHHHhCCCCccEEeeeCCC
Q 028616 70 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCW 108 (206)
Q Consensus 70 ~~p~Lk~L~L~~~~it~~~l~~il~~c~~Le~LdL~~C~ 108 (206)
.+++|++|+|++|+|+... ..++..+++|+.|+|++|.
T Consensus 122 ~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~L~L~~N~ 159 (290)
T 1p9a_G 122 GLGELQELYLKGNELKTLP-PGLLTPTPKLEKLSLANNN 159 (290)
T ss_dssp TCTTCCEEECTTSCCCCCC-TTTTTTCTTCCEEECTTSC
T ss_pred CCCCCCEEECCCCCCCccC-hhhcccccCCCEEECCCCc
Confidence 3445555555555443211 1112334455555554443
No 73
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=98.01 E-value=3.8e-06 Score=74.89 Aligned_cols=39 Identities=15% Similarity=0.143 Sum_probs=18.7
Q ss_pred cCCCCcEEEeccCCCCCH-HHHHHHHhcCCCCceEEeeccc
Q 028616 12 RLSAVTFLDLSYCSKIGA-PALEAIGKHCKLLVVLCRNMHP 51 (206)
Q Consensus 12 ~~~~L~~L~Ls~c~~it~-~~l~~l~~~c~~L~~L~L~~~~ 51 (206)
.+++|+.|+|++|. ++. ..+......+++|+.|.++.+.
T Consensus 346 ~l~~L~~L~L~~N~-l~~l~~~~~~~~~l~~L~~L~Ls~N~ 385 (520)
T 2z7x_B 346 HLTELETLILQMNQ-LKELSKIAEMTTQMKSLQQLDISQNS 385 (520)
T ss_dssp CCSSCCEEECCSSC-CCBHHHHHHHHTTCTTCCEEECCSSC
T ss_pred cCCCCCEEEccCCc-cCccccchHHHhhCCCCCEEECCCCc
Confidence 35555555555543 332 2232333445666666665443
No 74
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=98.01 E-value=5.5e-07 Score=81.32 Aligned_cols=107 Identities=17% Similarity=0.083 Sum_probs=48.4
Q ss_pred cCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHHHH
Q 028616 12 RLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLK 91 (206)
Q Consensus 12 ~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l~~ 91 (206)
.+++|+.|+|++|. |+.-.-. ....+++|+.|.|+.+.+. .+... ...++++|++|+|++|+++.-.- .
T Consensus 74 ~l~~L~~L~Ls~N~-i~~i~~~-~f~~L~~L~~L~Ls~N~l~----~l~~~----~f~~L~~L~~L~Ls~N~l~~l~~-~ 142 (635)
T 4g8a_A 74 SFPELQVLDLSRCE-IQTIEDG-AYQSLSHLSTLILTGNPIQ----SLALG----AFSGLSSLQKLVAVETNLASLEN-F 142 (635)
T ss_dssp TCTTCCEEECTTCC-CCEECTT-TTTTCTTCCEEECTTCCCC----EECGG----GGTTCTTCCEEECTTSCCCCSTT-C
T ss_pred CCCCCCEEECCCCc-CCCcChh-HhcCCCCCCEEEccCCcCC----CCCHH----HhcCCCCCCEEECCCCcCCCCCh-h
Confidence 45566666666652 3311000 1133556666666544331 11111 12355666666666665443110 1
Q ss_pred HHhCCCCccEEeeeCCCCCCCChHHHHhcCCCCceeCC
Q 028616 92 ILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP 129 (206)
Q Consensus 92 il~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~ 129 (206)
.+.++++|+.|+|++|.............+++|+.|.+
T Consensus 143 ~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L 180 (635)
T 4g8a_A 143 PIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDL 180 (635)
T ss_dssp CCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEEC
T ss_pred hhhcCcccCeeccccCccccCCCchhhccchhhhhhcc
Confidence 13456666666666665332121122244556666555
No 75
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=98.01 E-value=4.8e-07 Score=74.39 Aligned_cols=37 Identities=24% Similarity=0.222 Sum_probs=17.4
Q ss_pred cCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecc
Q 028616 12 RLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMH 50 (206)
Q Consensus 12 ~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~ 50 (206)
.+++|+.|+|++| .++.....+ ...+++|+.|.++.+
T Consensus 50 ~l~~L~~L~l~~n-~l~~~~~~~-~~~l~~L~~L~L~~n 86 (276)
T 2z62_A 50 SFPELQVLDLSRC-EIQTIEDGA-YQSLSHLSTLILTGN 86 (276)
T ss_dssp TCTTCSEEECTTC-CCCEECTTT-TTTCTTCCEEECTTC
T ss_pred cccCCcEEECCCC-cCCccCHHH-ccCCcCCCEEECCCC
Confidence 3566666666665 233211111 133456666666544
No 76
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=97.98 E-value=7.6e-07 Score=81.46 Aligned_cols=109 Identities=15% Similarity=0.118 Sum_probs=60.8
Q ss_pred HhcCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHH
Q 028616 10 AGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIV 89 (206)
Q Consensus 10 ~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l 89 (206)
...+++|+.|+|++|. ++.....++ ..+++|+.|.|+.+.+... .. . +...+++|++|+|++|.|+.-.
T Consensus 71 ~~~l~~L~~L~L~~n~-l~~~~~~~~-~~l~~L~~L~L~~n~l~~~----~~---~-~~~~l~~L~~L~L~~n~l~~l~- 139 (597)
T 3oja_B 71 LDSFRQVELLNLNDLQ-IEEIDTYAF-AYAHTIQKLYMGFNAIRYL----PP---H-VFQNVPLLTVLVLERNDLSSLP- 139 (597)
T ss_dssp HHHCCCCSEEECTTSC-CCEECTTTT-TTCTTCCEEECCSSCCCCC----CT---T-TTTTCTTCCEEECCSSCCCCCC-
T ss_pred HccCCCCcEEECCCCC-CCCCChHHh-cCCCCCCEEECCCCcCCCC----CH---H-HHcCCCCCCEEEeeCCCCCCCC-
Confidence 4467888888888763 443211122 3567888888876544211 10 0 1136677777777777665211
Q ss_pred HHHHhCCCCccEEeeeCCCCCCCChHHHHhcCCCCceeCCC
Q 028616 90 LKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPF 130 (206)
Q Consensus 90 ~~il~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~~ 130 (206)
..++.++++|++|+|++|.........+ ..+++|+.|.+.
T Consensus 140 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~L~ 179 (597)
T 3oja_B 140 RGIFHNTPKLTTLSMSNNNLERIEDDTF-QATTSLQNLQLS 179 (597)
T ss_dssp TTTTTTCTTCCEEECCSSCCCBCCTTTT-TTCTTCCEEECT
T ss_pred HHHhccCCCCCEEEeeCCcCCCCChhhh-hcCCcCcEEECc
Confidence 1223566777777777775443332222 445666666654
No 77
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=97.98 E-value=7.7e-06 Score=72.29 Aligned_cols=56 Identities=20% Similarity=0.182 Sum_probs=34.7
Q ss_pred cCCCCcEEEccCCcCCHHHHHHHHhCCCCccEEeeeCCCCCCCChHHHHhcCCCCceeCCCC
Q 028616 70 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPFV 131 (206)
Q Consensus 70 ~~p~Lk~L~L~~~~it~~~l~~il~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~~~ 131 (206)
.+++|++|+|++|+++.. .-+.+|++|+.|++++|....... ...+++|+.|.+..
T Consensus 329 ~l~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~l~~n~l~~~~~---~~~l~~L~~L~l~~ 384 (466)
T 1o6v_A 329 SLTKLQRLFFYNNKVSDV---SSLANLTNINWLSAGHNQISDLTP---LANLTRITQLGLND 384 (466)
T ss_dssp GCTTCCEEECCSSCCCCC---GGGTTCTTCCEEECCSSCCCBCGG---GTTCTTCCEEECCC
T ss_pred cCccCCEeECCCCccCCc---hhhccCCCCCEEeCCCCccCccch---hhcCCCCCEEeccC
Confidence 667777777777765543 234567777777777776542222 35677777776643
No 78
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.98 E-value=5.8e-06 Score=69.10 Aligned_cols=92 Identities=18% Similarity=0.161 Sum_probs=65.2
Q ss_pred HHHHHhcCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCC
Q 028616 6 VAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVIS 85 (206)
Q Consensus 6 l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it 85 (206)
+..+...+|+|++|+|++|..-+-.++..+...+++|+.|+|+.+.+.. -..+..+. .+ +|++|.|++|.++
T Consensus 162 l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~------~~~l~~l~-~l-~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 162 LRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS------ERELDKIK-GL-KLEELWLDGNSLC 233 (267)
T ss_dssp HHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCS------GGGGGGGT-TS-CCSEEECTTSTTG
T ss_pred HHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCC------chhhhhcc-cC-CcceEEccCCcCc
Confidence 3344467999999999998533334555666789999999998775531 11222222 33 9999999999987
Q ss_pred H------HHHHHHHhCCCCccEEeee
Q 028616 86 T------EIVLKILSSCALLEFLDLR 105 (206)
Q Consensus 86 ~------~~l~~il~~c~~Le~LdL~ 105 (206)
. .-...++..+|+|+.||=.
T Consensus 234 ~~~~~~~~y~~~il~~~P~L~~LDg~ 259 (267)
T 3rw6_A 234 DTFRDQSTYISAIRERFPKLLRLDGH 259 (267)
T ss_dssp GGCSSHHHHHHHHHHHCTTCCEESSC
T ss_pred cccCcchhHHHHHHHHCcccCeECCc
Confidence 4 3456788899999999743
No 79
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=97.97 E-value=1.3e-06 Score=73.50 Aligned_cols=37 Identities=22% Similarity=0.258 Sum_probs=18.3
Q ss_pred CCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecc
Q 028616 13 LSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMH 50 (206)
Q Consensus 13 ~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~ 50 (206)
+++|+.|+|++| .++......+...+++|+.|.++.+
T Consensus 143 l~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N 179 (317)
T 3o53_A 143 RSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYN 179 (317)
T ss_dssp GSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEECTTS
T ss_pred cCCCCEEECCCC-CCCcccHHHHhhccCcCCEEECCCC
Confidence 455555555554 2443333334444555666555544
No 80
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=97.96 E-value=2.2e-05 Score=70.16 Aligned_cols=39 Identities=21% Similarity=0.173 Sum_probs=18.4
Q ss_pred cCCCCcEEEccCCcCCHHHH-HHHHhCCCCccEEeeeCCC
Q 028616 70 TMPKLKRLEMAYHVISTEIV-LKILSSCALLEFLDLRGCW 108 (206)
Q Consensus 70 ~~p~Lk~L~L~~~~it~~~l-~~il~~c~~Le~LdL~~C~ 108 (206)
.+++|++|+|++|.++.-.. ...+..+++|+.|+|++|.
T Consensus 359 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~ 398 (549)
T 2z81_A 359 AWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNT 398 (549)
T ss_dssp SSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCC
T ss_pred ccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCC
Confidence 44555555555555443321 2234445555555555553
No 81
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=97.95 E-value=4.3e-07 Score=86.45 Aligned_cols=39 Identities=15% Similarity=0.214 Sum_probs=20.1
Q ss_pred cCCCCcEEEccCCcCCHHHHHHHHhCCCCccEEeeeCCC
Q 028616 70 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCW 108 (206)
Q Consensus 70 ~~p~Lk~L~L~~~~it~~~l~~il~~c~~Le~LdL~~C~ 108 (206)
.+++|++|+|++|.++.......+.++++|+.|+|++|.
T Consensus 121 ~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~ 159 (844)
T 3j0a_A 121 NLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQ 159 (844)
T ss_dssp SCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSC
T ss_pred ccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCc
Confidence 455555555555554433222234455666666665554
No 82
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=97.94 E-value=1e-05 Score=71.49 Aligned_cols=55 Identities=20% Similarity=0.118 Sum_probs=29.2
Q ss_pred cCCCCcEEEccCCcCCHHHHHHHHhCCCCccEEeeeCCCCCCCChHHHHhcCCCCceeCCC
Q 028616 70 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPF 130 (206)
Q Consensus 70 ~~p~Lk~L~L~~~~it~~~l~~il~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~~ 130 (206)
.+++|++|+|++|.++.... +..+++|+.|++++|..... .. ...+++|+.|...
T Consensus 307 ~l~~L~~L~L~~n~l~~~~~---~~~l~~L~~L~l~~n~l~~~--~~-l~~l~~L~~L~l~ 361 (466)
T 1o6v_A 307 NLKNLTYLTLYFNNISDISP---VSSLTKLQRLFFYNNKVSDV--SS-LANLTNINWLSAG 361 (466)
T ss_dssp GCTTCSEEECCSSCCSCCGG---GGGCTTCCEEECCSSCCCCC--GG-GTTCTTCCEEECC
T ss_pred CCCCCCEEECcCCcCCCchh---hccCccCCEeECCCCccCCc--hh-hccCCCCCEEeCC
Confidence 55666666666665444321 34566666666666643322 11 2456666666553
No 83
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=97.94 E-value=7.2e-07 Score=80.98 Aligned_cols=109 Identities=17% Similarity=0.149 Sum_probs=57.5
Q ss_pred hcCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHHH
Q 028616 11 GRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVL 90 (206)
Q Consensus 11 ~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l~ 90 (206)
..+++|++|+|++|. ++...-.+ ...+++|+.|.|+.+.+.... ..++ ..+++|++|+|++|.++...-.
T Consensus 53 ~~l~~L~~L~Ls~n~-l~~i~~~~-~~~l~~L~~L~Ls~n~l~~~~-------p~~~-~~l~~L~~L~L~~n~l~~~~~~ 122 (606)
T 3vq2_A 53 SNFSELQWLDLSRCE-IETIEDKA-WHGLHHLSNLILTGNPIQSFS-------PGSF-SGLTSLENLVAVETKLASLESF 122 (606)
T ss_dssp TTCTTCCEEECTTCC-CCEECTTT-TTTCTTCCEEECTTCCCCCCC-------TTSS-TTCTTCCEEECTTSCCCCSSSS
T ss_pred cCCccCcEEeCCCCc-ccccCHHH-hhchhhcCEeECCCCcccccC-------hhhc-CCcccCCEEEccCCcccccccc
Confidence 357778888887763 44211111 245677888877655432110 0111 2567777777777765432211
Q ss_pred HHHhCCCCccEEeeeCCCCCCCChHHHHhcCCCCceeCCC
Q 028616 91 KILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPF 130 (206)
Q Consensus 91 ~il~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~~ 130 (206)
. +.++++|++|+|++|......-......+++|+.|.+.
T Consensus 123 ~-~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls 161 (606)
T 3vq2_A 123 P-IGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLS 161 (606)
T ss_dssp C-CTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECC
T ss_pred c-cCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEcc
Confidence 1 44667777777777654321111112456666666654
No 84
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=97.94 E-value=1.8e-07 Score=84.05 Aligned_cols=39 Identities=28% Similarity=0.431 Sum_probs=16.8
Q ss_pred cCCCCcEEEccCCcCCHHHHHHHHhCCCCccEEeeeCCC
Q 028616 70 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCW 108 (206)
Q Consensus 70 ~~p~Lk~L~L~~~~it~~~l~~il~~c~~Le~LdL~~C~ 108 (206)
.+++|++|+|++|.++...+-..+..|++|+.|+|++|.
T Consensus 443 ~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~ 481 (570)
T 2z63_A 443 GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 481 (570)
T ss_dssp TCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC
T ss_pred cCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCc
Confidence 344555555554444322222223344445555554443
No 85
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=97.93 E-value=5.1e-07 Score=79.39 Aligned_cols=88 Identities=22% Similarity=0.115 Sum_probs=45.3
Q ss_pred cCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHHHH
Q 028616 12 RLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLK 91 (206)
Q Consensus 12 ~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l~~ 91 (206)
.+++|+.|+|++|. ++.....++ ..+++|+.|.|+.+.+... ... ....+++|++|+|++|.|+.-.- .
T Consensus 86 ~l~~L~~L~Ls~n~-i~~i~~~~~-~~l~~L~~L~L~~n~l~~~----~~~----~~~~l~~L~~L~L~~N~i~~~~~-~ 154 (440)
T 3zyj_A 86 HLRHLEILQLSRNH-IRTIEIGAF-NGLANLNTLELFDNRLTTI----PNG----AFVYLSKLKELWLRNNPIESIPS-Y 154 (440)
T ss_dssp SCSSCCEEECCSSC-CCEECGGGG-TTCSSCCEEECCSSCCSSC----CTT----TSCSCSSCCEEECCSCCCCEECT-T
T ss_pred CCCCCCEEECCCCc-CCccChhhc-cCCccCCEEECCCCcCCee----CHh----HhhccccCceeeCCCCcccccCH-H
Confidence 46777777777763 442222222 3467777777765544211 110 11255677777777766543211 1
Q ss_pred HHhCCCCccEEeeeCCCCC
Q 028616 92 ILSSCALLEFLDLRGCWDV 110 (206)
Q Consensus 92 il~~c~~Le~LdL~~C~~v 110 (206)
.+.++++|+.|+|++|..+
T Consensus 155 ~~~~l~~L~~L~l~~~~~l 173 (440)
T 3zyj_A 155 AFNRIPSLRRLDLGELKRL 173 (440)
T ss_dssp TTTTCTTCCEEECCCCTTC
T ss_pred HhhhCcccCEeCCCCCCCc
Confidence 2335566666666655443
No 86
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=97.93 E-value=8.4e-07 Score=71.20 Aligned_cols=106 Identities=15% Similarity=0.064 Sum_probs=71.6
Q ss_pred CCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHHHHHH
Q 028616 14 SAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKIL 93 (206)
Q Consensus 14 ~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l~~il 93 (206)
++|+.|+|++|. |+..... ....+++|+.|.|+.+.+.. +. ..++ ..+++|++|+|++|.|+.-. ..++
T Consensus 32 ~~l~~L~l~~n~-i~~i~~~-~~~~l~~L~~L~Ls~N~i~~----~~---~~~~-~~l~~L~~L~Ls~N~l~~l~-~~~f 100 (220)
T 2v9t_B 32 ETITEIRLEQNT-IKVIPPG-AFSPYKKLRRIDLSNNQISE----LA---PDAF-QGLRSLNSLVLYGNKITELP-KSLF 100 (220)
T ss_dssp TTCCEEECCSSC-CCEECTT-SSTTCTTCCEEECCSSCCCE----EC---TTTT-TTCSSCCEEECCSSCCCCCC-TTTT
T ss_pred cCCCEEECCCCc-CCCcCHh-HhhCCCCCCEEECCCCcCCC----cC---HHHh-hCCcCCCEEECCCCcCCccC-HhHc
Confidence 589999999974 5522111 22457899999998765421 11 1112 37899999999999877321 2234
Q ss_pred hCCCCccEEeeeCCCCCCCChHHHHhcCCCCceeCCCC
Q 028616 94 SSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPFV 131 (206)
Q Consensus 94 ~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~~~ 131 (206)
.++++|+.|+|++|.........+ ..+++|+.|.+..
T Consensus 101 ~~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~L~~ 137 (220)
T 2v9t_B 101 EGLFSLQLLLLNANKINCLRVDAF-QDLHNLNLLSLYD 137 (220)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTT-TTCTTCCEEECCS
T ss_pred cCCCCCCEEECCCCCCCEeCHHHc-CCCCCCCEEECCC
Confidence 678999999999997664443332 5678888888754
No 87
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=97.93 E-value=4.1e-07 Score=82.61 Aligned_cols=60 Identities=17% Similarity=0.191 Sum_probs=29.7
Q ss_pred cCCCCcEEEccCCcCCHHHHH--HHHhCCCCccEEeeeCCCCCCCChHHHHhcCCCCceeCCC
Q 028616 70 TMPKLKRLEMAYHVISTEIVL--KILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPF 130 (206)
Q Consensus 70 ~~p~Lk~L~L~~~~it~~~l~--~il~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~~ 130 (206)
.+|+|++|+|++|.++...+. ..+..+++|+.|+|++|.........+ ..+++|+.|.+.
T Consensus 447 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~-~~l~~L~~L~Ls 508 (606)
T 3t6q_A 447 GLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAF-TSLKMMNHVDLS 508 (606)
T ss_dssp TCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTT-TTCTTCCEEECC
T ss_pred CCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhh-ccccCCCEEECC
Confidence 456666666666665542211 224456666666666665432222111 345555555553
No 88
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=97.92 E-value=3.8e-06 Score=69.16 Aligned_cols=61 Identities=23% Similarity=0.211 Sum_probs=45.0
Q ss_pred hcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHHHHHHhCCCCccEEeeeCCCCC
Q 028616 37 KHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDV 110 (206)
Q Consensus 37 ~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l~~il~~c~~Le~LdL~~C~~v 110 (206)
..+++|+.|.++.+.+ +.- .. ...+++|++|+|++|.|+.. ..+..+++|+.|+|++|...
T Consensus 125 ~~l~~L~~L~Ls~N~i-------~~~--~~-l~~l~~L~~L~L~~N~i~~~---~~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 125 IHLKNLEILSIRNNKL-------KSI--VM-LGFLSKLEVLDLHGNEITNT---GGLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp TTCTTCCEEECTTSCC-------CBC--GG-GGGCTTCCEEECTTSCCCBC---TTSTTCCCCCEEEEEEEEEE
T ss_pred cCcccccEEECCCCcC-------CCC--hH-HccCCCCCEEECCCCcCcch---HHhccCCCCCEEeCCCCccc
Confidence 3467777777765543 221 12 34789999999999998876 45678999999999998754
No 89
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=97.92 E-value=8.3e-07 Score=76.26 Aligned_cols=38 Identities=24% Similarity=0.022 Sum_probs=19.4
Q ss_pred cCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeeccc
Q 028616 12 RLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHP 51 (206)
Q Consensus 12 ~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~ 51 (206)
.+++|+.|+|++| +|+...-.+ ...+++|+.|.|+.+.
T Consensus 62 ~l~~L~~L~L~~N-~i~~i~~~~-~~~l~~L~~L~Ls~N~ 99 (361)
T 2xot_A 62 RLTNLHSLLLSHN-HLNFISSEA-FVPVPNLRYLDLSSNH 99 (361)
T ss_dssp CCTTCCEEECCSS-CCCEECTTT-TTTCTTCCEEECCSSC
T ss_pred cccccCEEECCCC-cCCccChhh-ccCCCCCCEEECCCCc
Confidence 4566667777665 243211111 1345666666666544
No 90
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=97.92 E-value=1.1e-06 Score=77.59 Aligned_cols=58 Identities=22% Similarity=0.190 Sum_probs=29.4
Q ss_pred cCCCCcEEEccCCcCCHHHHHHHHhCCCCccEEeeeCCCCCCCChHHHHhcCCCCceeCC
Q 028616 70 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP 129 (206)
Q Consensus 70 ~~p~Lk~L~L~~~~it~~~l~~il~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~ 129 (206)
.+++|++|+|++|.++..... .+.++++|+.|+|++|.........+ ..+++|+.|.+
T Consensus 126 ~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~l-~~l~~L~~L~l 183 (477)
T 2id5_A 126 DLYNLKSLEVGDNDLVYISHR-AFSGLNSLEQLTLEKCNLTSIPTEAL-SHLHGLIVLRL 183 (477)
T ss_dssp TCTTCCEEEECCTTCCEECTT-SSTTCTTCCEEEEESCCCSSCCHHHH-TTCTTCCEEEE
T ss_pred ccccCCEEECCCCccceeChh-hccCCCCCCEEECCCCcCcccChhHh-cccCCCcEEeC
Confidence 455666666666554432111 12356666666666665443333222 44556666554
No 91
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.92 E-value=4e-07 Score=71.53 Aligned_cols=105 Identities=17% Similarity=0.083 Sum_probs=49.7
Q ss_pred CCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHHHHHHh
Q 028616 15 AVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILS 94 (206)
Q Consensus 15 ~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l~~il~ 94 (206)
+|+.|+|++| +++......+...+++|+.|.|+.+.+... .. .++ ..+++|++|+|++|+|+.... ..+.
T Consensus 30 ~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~----~~---~~~-~~l~~L~~L~Ls~N~l~~~~~-~~~~ 99 (192)
T 1w8a_A 30 HTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQLTGI----EP---NAF-EGASHIQELQLGENKIKEISN-KMFL 99 (192)
T ss_dssp TCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSCCCCB----CT---TTT-TTCTTCCEEECCSCCCCEECS-SSST
T ss_pred CCCEEECCCC-cCCccCCccccccCCCCCEEECCCCCCCCc----CH---hHc-CCcccCCEEECCCCcCCccCH-HHhc
Confidence 6667777665 343211111224456677777665543210 00 011 255666666666666543221 1123
Q ss_pred CCCCccEEeeeCCCCCCCChHHHHhcCCCCceeCCC
Q 028616 95 SCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPF 130 (206)
Q Consensus 95 ~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~~ 130 (206)
++++|++|+|+++.........+ ..+++|+.|.+.
T Consensus 100 ~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~L~ 134 (192)
T 1w8a_A 100 GLHQLKTLNLYDNQISCVMPGSF-EHLNSLTSLNLA 134 (192)
T ss_dssp TCTTCCEEECCSSCCCEECTTSS-TTCTTCCEEECT
T ss_pred CCCCCCEEECCCCcCCeeCHHHh-hcCCCCCEEEeC
Confidence 45666666666665432221111 344555555553
No 92
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=97.91 E-value=5.5e-07 Score=79.45 Aligned_cols=88 Identities=18% Similarity=0.068 Sum_probs=42.3
Q ss_pred cCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHHHH
Q 028616 12 RLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLK 91 (206)
Q Consensus 12 ~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l~~ 91 (206)
.+++|+.|+|++| .++.....++ ..+++|+.|.|+.+.+... ... ....+++|++|+|++|.|+.-. ..
T Consensus 97 ~l~~L~~L~Ls~n-~i~~~~~~~~-~~l~~L~~L~L~~n~l~~~----~~~----~~~~l~~L~~L~L~~N~l~~~~-~~ 165 (452)
T 3zyi_A 97 HLHHLEVLQLGRN-SIRQIEVGAF-NGLASLNTLELFDNWLTVI----PSG----AFEYLSKLRELWLRNNPIESIP-SY 165 (452)
T ss_dssp TCTTCCEEECCSS-CCCEECTTTT-TTCTTCCEEECCSSCCSBC----CTT----TSSSCTTCCEEECCSCCCCEEC-TT
T ss_pred CCCCCCEEECCCC-ccCCcChhhc-cCcccCCEEECCCCcCCcc----Chh----hhcccCCCCEEECCCCCcceeC-Hh
Confidence 4566666666665 2332111111 2356666666654433211 100 1125667777777777655321 11
Q ss_pred HHhCCCCccEEeeeCCCCC
Q 028616 92 ILSSCALLEFLDLRGCWDV 110 (206)
Q Consensus 92 il~~c~~Le~LdL~~C~~v 110 (206)
.+.++++|+.|+|++|..+
T Consensus 166 ~~~~l~~L~~L~l~~~~~l 184 (452)
T 3zyi_A 166 AFNRVPSLMRLDLGELKKL 184 (452)
T ss_dssp TTTTCTTCCEEECCCCTTC
T ss_pred HHhcCCcccEEeCCCCCCc
Confidence 2345566666666665444
No 93
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=97.91 E-value=2.9e-06 Score=73.11 Aligned_cols=55 Identities=24% Similarity=0.138 Sum_probs=26.2
Q ss_pred cCCCCcEEEccCCcCCHHHHHHHHhCCCCccEEeeeCCCCCCCChHHHHhcCCCCceeCCC
Q 028616 70 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPF 130 (206)
Q Consensus 70 ~~p~Lk~L~L~~~~it~~~l~~il~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~~ 130 (206)
.+|+|++|+|++|+++.- ..-+..+++|+.|+|++|...... ...+++|+.|.+.
T Consensus 293 ~l~~L~~L~L~~n~l~~~--~~~~~~l~~L~~L~L~~N~i~~~~----~~~~~~L~~L~l~ 347 (390)
T 3o6n_A 293 PIPTLKVLDLSHNHLLHV--ERNQPQFDRLENLYLDHNSIVTLK----LSTHHTLKNLTLS 347 (390)
T ss_dssp CCTTCCEEECCSSCCCCC--GGGHHHHTTCSEEECCSSCCCCCC----CCTTCCCSEEECC
T ss_pred CCCCCCEEECCCCcceec--CccccccCcCCEEECCCCccceeC----chhhccCCEEEcC
Confidence 445555555555554421 111234555666666555543222 2345555555553
No 94
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=97.90 E-value=2.7e-05 Score=66.12 Aligned_cols=112 Identities=16% Similarity=0.065 Sum_probs=61.7
Q ss_pred cCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHHHH
Q 028616 12 RLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLK 91 (206)
Q Consensus 12 ~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l~~ 91 (206)
.+++|+.|+|++|. ++... ..+...+++|+.|.++.+.+.... .. .+ .....++.|+.++|..+.+++..+..
T Consensus 196 ~l~~L~~L~l~~n~-l~~~~-~~~~~~~~~L~~L~L~~n~l~~~~--~~--~l-~~~~~~~~l~~l~L~~~~l~~~~l~~ 268 (353)
T 2z80_A 196 SIQNVSHLILHMKQ-HILLL-EIFVDVTSSVECLELRDTDLDTFH--FS--EL-STGETNSLIKKFTFRNVKITDESLFQ 268 (353)
T ss_dssp TCSEEEEEEEECSC-STTHH-HHHHHHTTTEEEEEEESCBCTTCC--CC---------CCCCCCEEEEESCBCCHHHHHH
T ss_pred ccccCCeecCCCCc-cccch-hhhhhhcccccEEECCCCcccccc--cc--cc-ccccccchhhccccccccccCcchhh
Confidence 45667777777653 33222 233445677777777665443211 00 11 11234566666666666666665554
Q ss_pred H---HhCCCCccEEeeeCCCCCCCChHHHHhcCCCCceeCCCC
Q 028616 92 I---LSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPFV 131 (206)
Q Consensus 92 i---l~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~~~ 131 (206)
+ +..+++|+.|+|++|....+.... ...+++|+.|.+..
T Consensus 269 l~~~l~~l~~L~~L~Ls~N~l~~i~~~~-~~~l~~L~~L~L~~ 310 (353)
T 2z80_A 269 VMKLLNQISGLLELEFSRNQLKSVPDGI-FDRLTSLQKIWLHT 310 (353)
T ss_dssp HHHHHHTCTTCCEEECCSSCCCCCCTTT-TTTCTTCCEEECCS
T ss_pred hHHHHhcccCCCEEECCCCCCCccCHHH-HhcCCCCCEEEeeC
Confidence 4 457788888888887655333322 24567777777643
No 95
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=97.89 E-value=1.7e-06 Score=71.09 Aligned_cols=91 Identities=24% Similarity=0.171 Sum_probs=62.3
Q ss_pred hcCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHHH
Q 028616 11 GRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVL 90 (206)
Q Consensus 11 ~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l~ 90 (206)
..+++|+.|+|++|. ++.....++ ..+++|+.|.++.+.+.... . .. ...+++|++|+|++|.++...+.
T Consensus 73 ~~l~~L~~L~L~~n~-l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~----~---~~-~~~l~~L~~L~l~~n~l~~~~l~ 142 (276)
T 2z62_A 73 QSLSHLSTLILTGNP-IQSLALGAF-SGLSSLQKLVAVETNLASLE----N---FP-IGHLKTLKELNVAHNLIQSFKLP 142 (276)
T ss_dssp TTCTTCCEEECTTCC-CCEECTTTT-TTCTTCCEEECTTSCCCCST----T---CC-CTTCTTCCEEECCSSCCCCCCCC
T ss_pred cCCcCCCEEECCCCc-cCccChhhh-cCCccccEEECCCCCccccC----c---hh-cccCCCCCEEECcCCccceecCc
Confidence 468999999999974 543222222 45789999999766542111 0 01 23778999999999987764444
Q ss_pred HHHhCCCCccEEeeeCCCCCC
Q 028616 91 KILSSCALLEFLDLRGCWDVK 111 (206)
Q Consensus 91 ~il~~c~~Le~LdL~~C~~v~ 111 (206)
..+.++++|+.|+|++|....
T Consensus 143 ~~~~~l~~L~~L~Ls~N~l~~ 163 (276)
T 2z62_A 143 EYFSNLTNLEHLDLSSNKIQS 163 (276)
T ss_dssp GGGGGCTTCCEEECCSSCCCE
T ss_pred hhhccCCCCCEEECCCCCCCc
Confidence 456688999999999987553
No 96
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=97.89 E-value=2.2e-06 Score=69.04 Aligned_cols=106 Identities=12% Similarity=0.017 Sum_probs=73.5
Q ss_pred CCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHHHHH
Q 028616 13 LSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKI 92 (206)
Q Consensus 13 ~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l~~i 92 (206)
.++|+.|+|++|. ++...- .....+++|+.|.|+.+.+.. +.. .+...+++|++|+|++|+|+.-. ..+
T Consensus 39 ~~~L~~L~Ls~n~-i~~~~~-~~~~~l~~L~~L~L~~N~l~~----i~~----~~~~~l~~L~~L~Ls~N~l~~l~-~~~ 107 (229)
T 3e6j_A 39 PTNAQILYLHDNQ-ITKLEP-GVFDSLINLKELYLGSNQLGA----LPV----GVFDSLTQLTVLDLGTNQLTVLP-SAV 107 (229)
T ss_dssp CTTCSEEECCSSC-CCCCCT-TTTTTCTTCCEEECCSSCCCC----CCT----TTTTTCTTCCEEECCSSCCCCCC-TTT
T ss_pred CCCCCEEEcCCCc-cCccCH-HHhhCccCCcEEECCCCCCCC----cCh----hhcccCCCcCEEECCCCcCCccC-hhH
Confidence 4789999999974 553211 223457999999998776521 111 12247899999999999977421 223
Q ss_pred HhCCCCccEEeeeCCCCCCCChHHHHhcCCCCceeCCCC
Q 028616 93 LSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPFV 131 (206)
Q Consensus 93 l~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~~~ 131 (206)
+.++++|+.|+|+++....+... + ..+++|+.|.+..
T Consensus 108 ~~~l~~L~~L~Ls~N~l~~lp~~-~-~~l~~L~~L~L~~ 144 (229)
T 3e6j_A 108 FDRLVHLKELFMCCNKLTELPRG-I-ERLTHLTHLALDQ 144 (229)
T ss_dssp TTTCTTCCEEECCSSCCCSCCTT-G-GGCTTCSEEECCS
T ss_pred hCcchhhCeEeccCCcccccCcc-c-ccCCCCCEEECCC
Confidence 46899999999999986644332 2 6788999988754
No 97
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=97.88 E-value=8.2e-07 Score=71.24 Aligned_cols=108 Identities=11% Similarity=0.065 Sum_probs=71.6
Q ss_pred CCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHHHHH
Q 028616 13 LSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKI 92 (206)
Q Consensus 13 ~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l~~i 92 (206)
.+.++.|+|++|. ++..........+++|+.|.|+.+.+.. +.. .++ ..+++|++|+|++|.|+...- ..
T Consensus 31 ~~~~~~L~L~~N~-l~~~~~~~~~~~l~~L~~L~L~~N~i~~----i~~---~~~-~~l~~L~~L~Ls~N~l~~~~~-~~ 100 (220)
T 2v70_A 31 PQYTAELRLNNNE-FTVLEATGIFKKLPQLRKINFSNNKITD----IEE---GAF-EGASGVNEILLTSNRLENVQH-KM 100 (220)
T ss_dssp CTTCSEEECCSSC-CCEECCCCCGGGCTTCCEEECCSSCCCE----ECT---TTT-TTCTTCCEEECCSSCCCCCCG-GG
T ss_pred CCCCCEEEcCCCc-CCccCchhhhccCCCCCEEECCCCcCCE----ECH---HHh-CCCCCCCEEECCCCccCccCH-hH
Confidence 3468899999874 5532111223567999999998765431 111 112 378999999999998764322 23
Q ss_pred HhCCCCccEEeeeCCCCCCCChHHHHhcCCCCceeCCCC
Q 028616 93 LSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPFV 131 (206)
Q Consensus 93 l~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~~~ 131 (206)
+.++++|+.|+|++|.........+ ..+++|+.|.+..
T Consensus 101 ~~~l~~L~~L~Ls~N~l~~~~~~~~-~~l~~L~~L~L~~ 138 (220)
T 2v70_A 101 FKGLESLKTLMLRSNRITCVGNDSF-IGLSSVRLLSLYD 138 (220)
T ss_dssp GTTCSSCCEEECTTSCCCCBCTTSS-TTCTTCSEEECTT
T ss_pred hcCCcCCCEEECCCCcCCeECHhHc-CCCccCCEEECCC
Confidence 4689999999999998664433332 4678888888754
No 98
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=97.87 E-value=3.7e-07 Score=82.88 Aligned_cols=59 Identities=14% Similarity=0.111 Sum_probs=30.2
Q ss_pred cCCCCcEEEccCCcCCHHHHHHHHhCCCCccEEeeeCCCCCCCChHHHHhcCCCCceeCCC
Q 028616 70 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPF 130 (206)
Q Consensus 70 ~~p~Lk~L~L~~~~it~~~l~~il~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~~ 130 (206)
.+++|++|+|++|.++.... ..+.++++|+.|+|++|......... ...+++|+.|.+.
T Consensus 471 ~l~~L~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~l~~L~~L~l~ 529 (606)
T 3vq2_A 471 NTTNLTFLDLSKCQLEQISW-GVFDTLHRLQLLNMSHNNLLFLDSSH-YNQLYSLSTLDCS 529 (606)
T ss_dssp TCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEECCSSCCSCEEGGG-TTTCTTCCEEECT
T ss_pred cCCCCCEEECCCCcCCccCh-hhhcccccCCEEECCCCcCCCcCHHH-ccCCCcCCEEECC
Confidence 45666666666665543211 12345666666666666544221112 2445666666653
No 99
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=97.87 E-value=5.9e-07 Score=75.70 Aligned_cols=88 Identities=19% Similarity=0.193 Sum_probs=45.5
Q ss_pred cCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHHHH
Q 028616 12 RLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLK 91 (206)
Q Consensus 12 ~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l~~ 91 (206)
++++|++|+|+++..++......+ ..+++|+.|.|+.+.+.. .+. ..+ ..+++|++|+|++|.|+.. +-.
T Consensus 74 ~l~~L~~L~L~~~n~l~~~~p~~l-~~l~~L~~L~Ls~n~l~~---~~p----~~~-~~l~~L~~L~Ls~N~l~~~-~p~ 143 (313)
T 1ogq_A 74 NLPYLNFLYIGGINNLVGPIPPAI-AKLTQLHYLYITHTNVSG---AIP----DFL-SQIKTLVTLDFSYNALSGT-LPP 143 (313)
T ss_dssp GCTTCSEEEEEEETTEESCCCGGG-GGCTTCSEEEEEEECCEE---ECC----GGG-GGCTTCCEEECCSSEEESC-CCG
T ss_pred CCCCCCeeeCCCCCcccccCChhH-hcCCCCCEEECcCCeeCC---cCC----HHH-hCCCCCCEEeCCCCccCCc-CCh
Confidence 467777777774222332111122 346777777776554320 000 112 2567777777777765431 111
Q ss_pred HHhCCCCccEEeeeCCCC
Q 028616 92 ILSSCALLEFLDLRGCWD 109 (206)
Q Consensus 92 il~~c~~Le~LdL~~C~~ 109 (206)
.+.++++|++|+|++|..
T Consensus 144 ~~~~l~~L~~L~L~~N~l 161 (313)
T 1ogq_A 144 SISSLPNLVGITFDGNRI 161 (313)
T ss_dssp GGGGCTTCCEEECCSSCC
T ss_pred HHhcCCCCCeEECcCCcc
Confidence 234567777777777654
No 100
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=97.86 E-value=7.4e-06 Score=68.93 Aligned_cols=115 Identities=15% Similarity=0.124 Sum_probs=52.9
Q ss_pred hcCCCCcEEEeccCCCCCHHHH-HHHHhcCCCCceEEeecccCCCC--------------CCCCChHHHHHHHhcCCCCc
Q 028616 11 GRLSAVTFLDLSYCSKIGAPAL-EAIGKHCKLLVVLCRNMHPLDTA--------------DKLSQDDEANAIASTMPKLK 75 (206)
Q Consensus 11 ~~~~~L~~L~Ls~c~~it~~~l-~~l~~~c~~L~~L~L~~~~~~~~--------------g~~v~d~~~~~ia~~~p~Lk 75 (206)
..+++|+.|+|++|. ++..++ ......+++|+.|.++.+.+... +..++......+ ..+++|+
T Consensus 142 ~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~L~~L~l~~n~l~~~~~~~~-~~l~~L~ 219 (330)
T 1xku_A 142 NGLNQMIVVELGTNP-LKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASL-KGLNNLA 219 (330)
T ss_dssp TTCTTCCEEECCSSC-CCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCCEECTGGG-TTCTTCC
T ss_pred cCCccccEEECCCCc-CCccCcChhhccCCCCcCEEECCCCccccCCccccccCCEEECCCCcCCccCHHHh-cCCCCCC
Confidence 356677777776653 332111 11224456677776654433210 011111111112 2456666
Q ss_pred EEEccCCcCCHHHHHHHHhCCCCccEEeeeCCCCCCCChHHHHhcCCCCceeCCC
Q 028616 76 RLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPF 130 (206)
Q Consensus 76 ~L~L~~~~it~~~l~~il~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~~ 130 (206)
+|+|++|.++..... .+..+++|+.|+|++|....+... ...+++|+.|.+.
T Consensus 220 ~L~Ls~n~l~~~~~~-~~~~l~~L~~L~L~~N~l~~lp~~--l~~l~~L~~L~l~ 271 (330)
T 1xku_A 220 KLGLSFNSISAVDNG-SLANTPHLRELHLNNNKLVKVPGG--LADHKYIQVVYLH 271 (330)
T ss_dssp EEECCSSCCCEECTT-TGGGSTTCCEEECCSSCCSSCCTT--TTTCSSCCEEECC
T ss_pred EEECCCCcCceeChh-hccCCCCCCEEECCCCcCccCChh--hccCCCcCEEECC
Confidence 666666655442211 233566666666666654422221 1345556665553
No 101
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=97.85 E-value=1.1e-06 Score=79.36 Aligned_cols=105 Identities=20% Similarity=0.115 Sum_probs=71.9
Q ss_pred CCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHHHHHHh
Q 028616 15 AVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILS 94 (206)
Q Consensus 15 ~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l~~il~ 94 (206)
++++|+|++| +|+.-.-.+ ...+++|+.|.|+.+.+.. +... ++ ..+++|++|+|++|+|+.-.. ..+.
T Consensus 53 ~~~~LdLs~N-~i~~l~~~~-f~~l~~L~~L~Ls~N~i~~----i~~~---~f-~~L~~L~~L~Ls~N~l~~l~~-~~f~ 121 (635)
T 4g8a_A 53 STKNLDLSFN-PLRHLGSYS-FFSFPELQVLDLSRCEIQT----IEDG---AY-QSLSHLSTLILTGNPIQSLAL-GAFS 121 (635)
T ss_dssp TCCEEECTTS-CCCEECTTT-TTTCTTCCEEECTTCCCCE----ECTT---TT-TTCTTCCEEECTTCCCCEECG-GGGT
T ss_pred CCCEEEeeCC-CCCCCCHHH-HhCCCCCCEEECCCCcCCC----cChh---Hh-cCCCCCCEEEccCCcCCCCCH-HHhc
Confidence 7999999997 465321112 2467999999998765421 1111 12 378999999999998765321 2356
Q ss_pred CCCCccEEeeeCCCCCCCChHHHHhcCCCCceeCCCC
Q 028616 95 SCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPFV 131 (206)
Q Consensus 95 ~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~~~ 131 (206)
++++|++|+|++|....+....+ ..+++|+.|.+..
T Consensus 122 ~L~~L~~L~Ls~N~l~~l~~~~~-~~L~~L~~L~Ls~ 157 (635)
T 4g8a_A 122 GLSSLQKLVAVETNLASLENFPI-GHLKTLKELNVAH 157 (635)
T ss_dssp TCTTCCEEECTTSCCCCSTTCCC-TTCTTCCEEECCS
T ss_pred CCCCCCEEECCCCcCCCCChhhh-hcCcccCeecccc
Confidence 89999999999997654343222 5678899888754
No 102
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=97.84 E-value=7.5e-06 Score=77.05 Aligned_cols=38 Identities=26% Similarity=0.347 Sum_probs=17.0
Q ss_pred cCCCCcEEEeccCCCCCHHHHH--HHHhcCCCCceEEeecc
Q 028616 12 RLSAVTFLDLSYCSKIGAPALE--AIGKHCKLLVVLCRNMH 50 (206)
Q Consensus 12 ~~~~L~~L~Ls~c~~it~~~l~--~l~~~c~~L~~L~L~~~ 50 (206)
++++|++|+|++|. ++..... .+...|++|+.|.++.+
T Consensus 149 ~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~l~~L~~L~Ls~n 188 (768)
T 3rgz_A 149 KLNSLEVLDLSANS-ISGANVVGWVLSDGCGELKHLAISGN 188 (768)
T ss_dssp CCTTCSEEECCSSC-CEEETHHHHHHTTCCTTCCEEECCSS
T ss_pred cCCCCCEEECCCCc-cCCcCChhhhhhccCCCCCEEECCCC
Confidence 34555555555542 3321111 11344566666665543
No 103
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=97.84 E-value=3.8e-06 Score=74.87 Aligned_cols=109 Identities=17% Similarity=0.189 Sum_probs=72.6
Q ss_pred HHHhcCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcC-CCCcEEEccCCcCCH
Q 028616 8 QIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTM-PKLKRLEMAYHVIST 86 (206)
Q Consensus 8 ~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~-p~Lk~L~L~~~~it~ 86 (206)
.....+++|+.|+|++|. ++...-......+++|+.|.++.+.+ +.. +...+ ++|++|+|++|+|+
T Consensus 368 ~~~~~l~~L~~L~Ls~N~-l~~~l~~~~~~~l~~L~~L~Ls~N~l-------~~~----~~~~l~~~L~~L~Ls~N~l~- 434 (520)
T 2z7x_B 368 EMTTQMKSLQQLDISQNS-VSYDEKKGDCSWTKSLLSLNMSSNIL-------TDT----IFRCLPPRIKVLDLHSNKIK- 434 (520)
T ss_dssp HHHTTCTTCCEEECCSSC-CBCCGGGCSCCCCTTCCEEECCSSCC-------CGG----GGGSCCTTCCEEECCSSCCC-
T ss_pred HHHhhCCCCCEEECCCCc-CCcccccchhccCccCCEEECcCCCC-------Ccc----hhhhhcccCCEEECCCCccc-
Confidence 345679999999999985 44311111234578999999986644 211 12233 69999999999887
Q ss_pred HHHHHHHhCCCCccEEeeeCCCCCCCChHHHHhcCCCCceeCCCC
Q 028616 87 EIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPFV 131 (206)
Q Consensus 87 ~~l~~il~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~~~ 131 (206)
.+-.-+.++++|+.|+|++|....+... ....+++|+.|.+..
T Consensus 435 -~ip~~~~~l~~L~~L~L~~N~l~~l~~~-~~~~l~~L~~L~l~~ 477 (520)
T 2z7x_B 435 -SIPKQVVKLEALQELNVASNQLKSVPDG-IFDRLTSLQKIWLHT 477 (520)
T ss_dssp -CCCGGGGGCTTCCEEECCSSCCCCCCTT-TTTTCTTCCEEECCS
T ss_pred -ccchhhhcCCCCCEEECCCCcCCccCHH-HhccCCcccEEECcC
Confidence 3333234889999999999876544433 225577888887744
No 104
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=97.83 E-value=7.1e-07 Score=81.01 Aligned_cols=38 Identities=21% Similarity=0.355 Sum_probs=15.5
Q ss_pred CCCCcEEEccCCcCCHHHHHHHHhCCCCccEEeeeCCC
Q 028616 71 MPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCW 108 (206)
Q Consensus 71 ~p~Lk~L~L~~~~it~~~l~~il~~c~~Le~LdL~~C~ 108 (206)
+++|++|+|++|.++.......+.++++|+.|+|++|.
T Consensus 399 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~ 436 (606)
T 3t6q_A 399 CPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSL 436 (606)
T ss_dssp CTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCC
T ss_pred CccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCc
Confidence 44444444444443322211223344444444444443
No 105
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=97.83 E-value=3.3e-06 Score=75.67 Aligned_cols=37 Identities=22% Similarity=0.258 Sum_probs=18.0
Q ss_pred CCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecc
Q 028616 13 LSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMH 50 (206)
Q Consensus 13 ~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~ 50 (206)
+++|+.|+|++| .++......++..+++|+.|.|+.+
T Consensus 143 l~~L~~L~Ls~N-~l~~~~~~~l~~~l~~L~~L~Ls~N 179 (487)
T 3oja_A 143 RSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYN 179 (487)
T ss_dssp GSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEECTTS
T ss_pred CCCCCEEECCCC-CCCCcChHHHhhhCCcccEEecCCC
Confidence 455555555554 2343333334444555555555544
No 106
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=97.83 E-value=9.2e-07 Score=75.98 Aligned_cols=86 Identities=22% Similarity=0.165 Sum_probs=46.2
Q ss_pred CCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHHHHH
Q 028616 13 LSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKI 92 (206)
Q Consensus 13 ~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l~~i 92 (206)
.++|+.|+|++| +|+.-....+...+++|+.|.|+.+.+... ... ++ ..+++|++|+|++|+|+.-. ...
T Consensus 38 ~~~l~~L~Ls~N-~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i----~~~---~~-~~l~~L~~L~Ls~N~l~~~~-~~~ 107 (361)
T 2xot_A 38 PSYTALLDLSHN-NLSRLRAEWTPTRLTNLHSLLLSHNHLNFI----SSE---AF-VPVPNLRYLDLSSNHLHTLD-EFL 107 (361)
T ss_dssp CTTCSEEECCSS-CCCEECTTSSSSCCTTCCEEECCSSCCCEE----CTT---TT-TTCTTCCEEECCSSCCCEEC-TTT
T ss_pred CCCCCEEECCCC-CCCccChhhhhhcccccCEEECCCCcCCcc----Chh---hc-cCCCCCCEEECCCCcCCcCC-HHH
Confidence 356899999997 466433222333789999999987654311 100 11 24556666666665544311 011
Q ss_pred HhCCCCccEEeeeCCC
Q 028616 93 LSSCALLEFLDLRGCW 108 (206)
Q Consensus 93 l~~c~~Le~LdL~~C~ 108 (206)
+.++++|+.|+|++|.
T Consensus 108 ~~~l~~L~~L~L~~N~ 123 (361)
T 2xot_A 108 FSDLQALEVLLLYNNH 123 (361)
T ss_dssp TTTCTTCCEEECCSSC
T ss_pred hCCCcCCCEEECCCCc
Confidence 2344555555555544
No 107
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=97.82 E-value=3.7e-06 Score=73.81 Aligned_cols=60 Identities=13% Similarity=0.009 Sum_probs=30.2
Q ss_pred cCCCCcEEEccCCcCCHHHHHHHHhCCCCccEEeeeCCCCCCCChHHHHhcCCCCceeCCCC
Q 028616 70 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPFV 131 (206)
Q Consensus 70 ~~p~Lk~L~L~~~~it~~~l~~il~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~~~ 131 (206)
.+++|++|+|++|+|+.... ..+.++++|+.|+|++|....+.... ...+++|+.|.+..
T Consensus 229 ~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~L~~ 288 (440)
T 3zyj_A 229 GLMHLQKLWMIQSQIQVIER-NAFDNLQSLVEINLAHNNLTLLPHDL-FTPLHHLERIHLHH 288 (440)
T ss_dssp TCTTCCEEECTTCCCCEECT-TSSTTCTTCCEEECTTSCCCCCCTTT-TSSCTTCCEEECCS
T ss_pred cCccCCEEECCCCceeEECh-hhhcCCCCCCEEECCCCCCCccChhH-hccccCCCEEEcCC
Confidence 44555555555554443211 11335666777777666544333222 24566777776644
No 108
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=97.81 E-value=2.3e-06 Score=78.74 Aligned_cols=38 Identities=26% Similarity=0.293 Sum_probs=19.3
Q ss_pred cCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeeccc
Q 028616 12 RLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHP 51 (206)
Q Consensus 12 ~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~ 51 (206)
++++|++|+|++|. ++.....++ ..|++|+.|.|+.+.
T Consensus 47 ~l~~L~~L~Ls~n~-l~~~~~~~~-~~l~~L~~L~L~~n~ 84 (680)
T 1ziw_A 47 RYSQLTSLDVGFNT-ISKLEPELC-QKLPMLKVLNLQHNE 84 (680)
T ss_dssp GGTTCSEEECCSSC-CCCCCTTHH-HHCTTCCEEECCSSC
T ss_pred CCCcCcEEECCCCc-cCccCHHHH-hcccCcCEEECCCCc
Confidence 46666666666652 332111122 335666666665443
No 109
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=97.81 E-value=5.1e-06 Score=73.18 Aligned_cols=60 Identities=18% Similarity=0.020 Sum_probs=31.5
Q ss_pred cCCCCcEEEccCCcCCHHHHHHHHhCCCCccEEeeeCCCCCCCChHHHHhcCCCCceeCCCC
Q 028616 70 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPFV 131 (206)
Q Consensus 70 ~~p~Lk~L~L~~~~it~~~l~~il~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~~~ 131 (206)
.+++|++|+|++|.|+.... ..+.++++|+.|+|++|......... ...+++|+.|.+..
T Consensus 240 ~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~-~~~l~~L~~L~L~~ 299 (452)
T 3zyi_A 240 GLSSLKKLWVMNSQVSLIER-NAFDGLASLVELNLAHNNLSSLPHDL-FTPLRYLVELHLHH 299 (452)
T ss_dssp TCTTCCEEECTTSCCCEECT-TTTTTCTTCCEEECCSSCCSCCCTTS-STTCTTCCEEECCS
T ss_pred CccCCCEEEeCCCcCceECH-HHhcCCCCCCEEECCCCcCCccChHH-hccccCCCEEEccC
Confidence 45556666666555443221 12345677777777776544323222 24466777776644
No 110
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=97.80 E-value=1.7e-05 Score=66.62 Aligned_cols=39 Identities=21% Similarity=0.042 Sum_probs=21.0
Q ss_pred cCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccC
Q 028616 12 RLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPL 52 (206)
Q Consensus 12 ~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~ 52 (206)
.+++|+.|+|++|. ++.....++ ..+++|+.|.++.+.+
T Consensus 74 ~l~~L~~L~L~~n~-l~~~~~~~~-~~l~~L~~L~Ls~n~l 112 (330)
T 1xku_A 74 NLKNLHTLILINNK-ISKISPGAF-APLVKLERLYLSKNQL 112 (330)
T ss_dssp TCTTCCEEECCSSC-CCCBCTTTT-TTCTTCCEEECCSSCC
T ss_pred cCCCCCEEECCCCc-CCeeCHHHh-cCCCCCCEEECCCCcC
Confidence 46677777777653 332211122 3456777777765543
No 111
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=97.80 E-value=2.4e-06 Score=71.91 Aligned_cols=105 Identities=12% Similarity=-0.017 Sum_probs=50.8
Q ss_pred CCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHHHHH
Q 028616 13 LSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKI 92 (206)
Q Consensus 13 ~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l~~i 92 (206)
+++|+.|+|++|. ++...-.. ...+++|+.|.++.+.+ +......+...+++|++|+|++|.|+... -
T Consensus 119 ~~~L~~L~l~~N~-l~~~~~~~-~~~l~~L~~L~Ls~N~l-------~~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~ 186 (317)
T 3o53_A 119 GQGKKNIYLANNK-ITMLRDLD-EGCRSRVQYLDLKLNEI-------DTVNFAELAASSDTLEHLNLQYNFIYDVK---G 186 (317)
T ss_dssp CSSCEEEECCSSC-CCSGGGBC-TGGGSSEEEEECTTSCC-------CEEEGGGGGGGTTTCCEEECTTSCCCEEE---C
T ss_pred cCCCCEEECCCCC-CCCccchh-hhccCCCCEEECCCCCC-------CcccHHHHhhccCcCCEEECCCCcCcccc---c
Confidence 4455555555542 33211111 12346666666654432 22112223345666777777766655431 1
Q ss_pred HhCCCCccEEeeeCCCCCCCChHHHHhcCCCCceeCCCC
Q 028616 93 LSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPFV 131 (206)
Q Consensus 93 l~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~~~ 131 (206)
...+++|+.|+|++|........ ...+++|+.|.+..
T Consensus 187 ~~~l~~L~~L~Ls~N~l~~l~~~--~~~l~~L~~L~L~~ 223 (317)
T 3o53_A 187 QVVFAKLKTLDLSSNKLAFMGPE--FQSAAGVTWISLRN 223 (317)
T ss_dssp CCCCTTCCEEECCSSCCCEECGG--GGGGTTCSEEECTT
T ss_pred ccccccCCEEECCCCcCCcchhh--hcccCcccEEECcC
Confidence 11366677777766654433222 23456666666643
No 112
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=97.79 E-value=3.2e-06 Score=74.63 Aligned_cols=105 Identities=16% Similarity=0.229 Sum_probs=58.9
Q ss_pred CCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHHHHHHh
Q 028616 15 AVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILS 94 (206)
Q Consensus 15 ~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l~~il~ 94 (206)
+|+.|+|++| .++.... .....+++|+.|.|+.+.+... . ...+ ..+++|++|+|++|+++..... .+.
T Consensus 225 ~L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~----~---~~~~-~~l~~L~~L~L~~n~l~~~~~~-~~~ 293 (477)
T 2id5_A 225 NLTSLSITHC-NLTAVPY-LAVRHLVYLRFLNLSYNPISTI----E---GSML-HELLRLQEIQLVGGQLAVVEPY-AFR 293 (477)
T ss_dssp CCSEEEEESS-CCCSCCH-HHHTTCTTCCEEECCSSCCCEE----C---TTSC-TTCTTCCEEECCSSCCSEECTT-TBT
T ss_pred cccEEECcCC-cccccCH-HHhcCccccCeeECCCCcCCcc----C---hhhc-cccccCCEEECCCCccceECHH-Hhc
Confidence 5555555554 2332221 2235577888888876544211 1 1111 3667888888888776653221 234
Q ss_pred CCCCccEEeeeCCCCCCCChHHHHhcCCCCceeCCCC
Q 028616 95 SCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPFV 131 (206)
Q Consensus 95 ~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~~~ 131 (206)
+|++|+.|+|++|.........+ ..+++|+.|.+..
T Consensus 294 ~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~l~~ 329 (477)
T 2id5_A 294 GLNYLRVLNVSGNQLTTLEESVF-HSVGNLETLILDS 329 (477)
T ss_dssp TCTTCCEEECCSSCCSCCCGGGB-SCGGGCCEEECCS
T ss_pred CcccCCEEECCCCcCceeCHhHc-CCCcccCEEEccC
Confidence 67888888888876553343222 4567777776643
No 113
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=97.78 E-value=1.6e-05 Score=73.30 Aligned_cols=113 Identities=12% Similarity=0.001 Sum_probs=68.4
Q ss_pred HhcCCCCcEEEeccCCCCCHH------------H----HHHHHh--cCCCCceEEeecccCCCCCCCCChHHHHHHHhcC
Q 028616 10 AGRLSAVTFLDLSYCSKIGAP------------A----LEAIGK--HCKLLVVLCRNMHPLDTADKLSQDDEANAIASTM 71 (206)
Q Consensus 10 ~~~~~~L~~L~Ls~c~~it~~------------~----l~~l~~--~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~ 71 (206)
..++++|++|+|++|. ++.. . +..-.. .+++|+.|.|+.+.+. + .+. ..+ .++
T Consensus 202 l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~--~-~~p----~~l-~~l 272 (636)
T 4eco_A 202 VMRLTKLRQFYMGNSP-FVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNL--T-KLP----TFL-KAL 272 (636)
T ss_dssp GGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTC--S-SCC----TTT-TTC
T ss_pred HhcccCCCEEECcCCc-cccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCC--c-cCh----HHH-hcC
Confidence 3468999999999985 6642 0 222222 6899999999866432 1 111 112 267
Q ss_pred CCCcEEEccCCc-CCHHHHHH-H-----HhCCCCccEEeeeCCCCCCCChHHHHhcCCCCceeCCCC
Q 028616 72 PKLKRLEMAYHV-ISTEIVLK-I-----LSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPFV 131 (206)
Q Consensus 72 p~Lk~L~L~~~~-it~~~l~~-i-----l~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~~~ 131 (206)
++|++|+|++|+ ++...+-. + ...+++|+.|+|++|....+........+++|+.|.+..
T Consensus 273 ~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~ 339 (636)
T 4eco_A 273 PEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLY 339 (636)
T ss_dssp SSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCS
T ss_pred CCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcC
Confidence 888888888887 77622222 2 134588888888887655333311235567777776643
No 114
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=97.78 E-value=8.5e-07 Score=71.45 Aligned_cols=106 Identities=10% Similarity=0.012 Sum_probs=54.1
Q ss_pred cCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeec-ccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHHH
Q 028616 12 RLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNM-HPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVL 90 (206)
Q Consensus 12 ~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~-~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l~ 90 (206)
.+++|+.|+|++|..++.-.-. ....+++|+.|.++. +.+.. +.. . ....+++|++|+|++|.++. +-
T Consensus 53 ~l~~L~~L~l~~n~~l~~i~~~-~f~~l~~L~~L~l~~~n~l~~----i~~---~-~f~~l~~L~~L~l~~n~l~~--lp 121 (239)
T 2xwt_C 53 NLPNISRIYVSIDVTLQQLESH-SFYNLSKVTHIEIRNTRNLTY----IDP---D-ALKELPLLKFLGIFNTGLKM--FP 121 (239)
T ss_dssp TCTTCCEEEEECCSSCCEECTT-TEESCTTCCEEEEEEETTCCE----ECT---T-SEECCTTCCEEEEEEECCCS--CC
T ss_pred CCCCCcEEeCCCCCCcceeCHh-HcCCCcCCcEEECCCCCCeeE----cCH---H-HhCCCCCCCEEeCCCCCCcc--cc
Confidence 4667777777766424321111 113466777777764 43321 010 0 11256777777777776554 11
Q ss_pred HHHhCCCCcc---EEeeeCCCCC-CCChHHHHhcCCCCc-eeCCC
Q 028616 91 KILSSCALLE---FLDLRGCWDV-KLDDKFMKGNFPNLK-VLGPF 130 (206)
Q Consensus 91 ~il~~c~~Le---~LdL~~C~~v-~~~~~~l~~~~~~L~-~L~~~ 130 (206)
. +..+++|+ .|++++|..+ ...... ...+++|+ .|.+.
T Consensus 122 ~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~-~~~l~~L~~~L~l~ 164 (239)
T 2xwt_C 122 D-LTKVYSTDIFFILEITDNPYMTSIPVNA-FQGLCNETLTLKLY 164 (239)
T ss_dssp C-CTTCCBCCSEEEEEEESCTTCCEECTTT-TTTTBSSEEEEECC
T ss_pred c-cccccccccccEEECCCCcchhhcCccc-ccchhcceeEEEcC
Confidence 2 44566666 7777777322 112111 24456666 66653
No 115
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=97.77 E-value=6.2e-06 Score=75.40 Aligned_cols=103 Identities=21% Similarity=0.142 Sum_probs=52.1
Q ss_pred cCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHHHH
Q 028616 12 RLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLK 91 (206)
Q Consensus 12 ~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l~~ 91 (206)
.+++|+.|+|++|. ++......+ ..+++|+.|.|+.+.+.. + ......+|+|++|+|++|.++. +-.
T Consensus 252 ~l~~L~~L~Ls~N~-l~~~~~~~~-~~l~~L~~L~Ls~N~l~~----l-----~~~~~~l~~L~~L~Ls~N~l~~--i~~ 318 (597)
T 3oja_B 252 NYPGLVEVDLSYNE-LEKIMYHPF-VKMQRLERLYISNNRLVA----L-----NLYGQPIPTLKVLDLSHNHLLH--VER 318 (597)
T ss_dssp GCTTCSEEECCSSC-CCEEESGGG-TTCSSCCEEECTTSCCCE----E-----ECSSSCCTTCCEEECCSSCCCC--CGG
T ss_pred cCCCCCEEECCCCc-cCCCCHHHh-cCccCCCEEECCCCCCCC----C-----CcccccCCCCcEEECCCCCCCc--cCc
Confidence 45566666666552 332211112 234556666665443211 0 0011246777777777776652 211
Q ss_pred HHhCCCCccEEeeeCCCCCCCChHHHHhcCCCCceeCCCC
Q 028616 92 ILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPFV 131 (206)
Q Consensus 92 il~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~~~ 131 (206)
-+..+++|+.|+|++|...... ...+++|+.|.+..
T Consensus 319 ~~~~l~~L~~L~L~~N~l~~~~----~~~~~~L~~L~l~~ 354 (597)
T 3oja_B 319 NQPQFDRLENLYLDHNSIVTLK----LSTHHTLKNLTLSH 354 (597)
T ss_dssp GHHHHTTCSEEECCSSCCCCCC----CCTTCCCSEEECCS
T ss_pred ccccCCCCCEEECCCCCCCCcC----hhhcCCCCEEEeeC
Confidence 2345677777777777654332 24566777766643
No 116
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=97.75 E-value=3.2e-05 Score=60.53 Aligned_cols=84 Identities=19% Similarity=0.150 Sum_probs=54.6
Q ss_pred cCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHH----
Q 028616 12 RLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTE---- 87 (206)
Q Consensus 12 ~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~---- 87 (206)
.+++|+.|+|++|. ++. +..+ ..+++|+.|.++.+.+ +.-........+++|++|+|++|.++..
T Consensus 91 ~~~~L~~L~L~~N~-l~~--l~~~-~~l~~L~~L~l~~N~i-------~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~ 159 (198)
T 1ds9_A 91 VADTLEELWISYNQ-IAS--LSGI-EKLVNLRVLYMSNNKI-------TNWGEIDKLAALDKLEDLLLAGNPLYNDYKEN 159 (198)
T ss_dssp HHHHCSEEEEEEEE-CCC--HHHH-HHHHHSSEEEESEEEC-------CCHHHHHHHTTTTTCSEEEECSCHHHHHHHTT
T ss_pred cCCcCCEEECcCCc-CCc--CCcc-ccCCCCCEEECCCCcC-------CchhHHHHHhcCCCCCEEEecCCccccccccc
Confidence 45677777777763 442 2333 2357788888876543 3322222334899999999999987554
Q ss_pred -----HHHHHHhCCCCccEEeeeC
Q 028616 88 -----IVLKILSSCALLEFLDLRG 106 (206)
Q Consensus 88 -----~l~~il~~c~~Le~LdL~~ 106 (206)
....++..+|+|+.||-..
T Consensus 160 ~~~~~~~~~~~~~l~~L~~Ld~~~ 183 (198)
T 1ds9_A 160 NATSEYRIEVVKRLPNLKKLDGMP 183 (198)
T ss_dssp TTHHHHHHHHHHHCSSCSEECCGG
T ss_pred cchHHHHHHHHHhCCCcEEECCcc
Confidence 2345678899999998433
No 117
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=97.74 E-value=1.2e-05 Score=67.11 Aligned_cols=103 Identities=19% Similarity=0.216 Sum_probs=60.0
Q ss_pred cCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHHHH
Q 028616 12 RLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLK 91 (206)
Q Consensus 12 ~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l~~ 91 (206)
.+++|+.|+|++|. ++. +... ..+++|+.|.++.+.+.. +.. ....+++|++|+|++|+|+.-.. .
T Consensus 53 ~l~~L~~L~L~~n~-l~~--~~~~-~~l~~L~~L~Ls~N~l~~----l~~-----~~~~l~~L~~L~l~~N~l~~l~~-~ 118 (290)
T 1p9a_G 53 PYTRLTQLNLDRAE-LTK--LQVD-GTLPVLGTLDLSHNQLQS----LPL-----LGQTLPALTVLDVSFNRLTSLPL-G 118 (290)
T ss_dssp TCTTCCEEECTTSC-CCE--EECC-SCCTTCCEEECCSSCCSS----CCC-----CTTTCTTCCEEECCSSCCCCCCS-S
T ss_pred cCCCCCEEECCCCc-cCc--ccCC-CCCCcCCEEECCCCcCCc----Cch-----hhccCCCCCEEECCCCcCcccCH-H
Confidence 46666677776653 332 1111 456777777776554421 111 12477899999999998764211 2
Q ss_pred HHhCCCCccEEeeeCCCCCCCChHHHHhcCCCCceeCC
Q 028616 92 ILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP 129 (206)
Q Consensus 92 il~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~ 129 (206)
.+.++++|+.|+|++|.........+ ..+++|+.|.+
T Consensus 119 ~~~~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~L 155 (290)
T 1p9a_G 119 ALRGLGELQELYLKGNELKTLPPGLL-TPTPKLEKLSL 155 (290)
T ss_dssp TTTTCTTCCEEECTTSCCCCCCTTTT-TTCTTCCEEEC
T ss_pred HHcCCCCCCEEECCCCCCCccChhhc-ccccCCCEEEC
Confidence 24678999999999986543333221 33455555544
No 118
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.73 E-value=1.9e-05 Score=72.29 Aligned_cols=105 Identities=23% Similarity=0.318 Sum_probs=75.1
Q ss_pred hcCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHHH
Q 028616 11 GRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVL 90 (206)
Q Consensus 11 ~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l~ 90 (206)
..+++|+.|+|++|. ++ .+..-...+++|+.|.|+.+.+.. +. .+ ..+++|++|+|++|.|+....-
T Consensus 460 ~~l~~L~~L~Ls~N~-l~--~lp~~~~~l~~L~~L~Ls~N~l~~----lp-----~l-~~l~~L~~L~Ls~N~l~~~~~p 526 (567)
T 1dce_A 460 EQLLLVTHLDLSHNR-LR--ALPPALAALRCLEVLQASDNALEN----VD-----GV-ANLPRLQELLLCNNRLQQSAAI 526 (567)
T ss_dssp GGGTTCCEEECCSSC-CC--CCCGGGGGCTTCCEEECCSSCCCC----CG-----GG-TTCSSCCEEECCSSCCCSSSTT
T ss_pred cccccCcEeecCccc-cc--ccchhhhcCCCCCEEECCCCCCCC----Cc-----cc-CCCCCCcEEECCCCCCCCCCCc
Confidence 468899999999974 55 333334568999999998775531 21 23 4789999999999998765313
Q ss_pred HHHhCCCCccEEeeeCCCCCCCCh--HHHHhcCCCCceeC
Q 028616 91 KILSSCALLEFLDLRGCWDVKLDD--KFMKGNFPNLKVLG 128 (206)
Q Consensus 91 ~il~~c~~Le~LdL~~C~~v~~~~--~~l~~~~~~L~~L~ 128 (206)
..+.++++|+.|+|++|....... ..+...+|+|+.|.
T Consensus 527 ~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 527 QPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp GGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred HHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 345689999999999987543322 23557789999884
No 119
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=97.72 E-value=3e-06 Score=65.18 Aligned_cols=89 Identities=17% Similarity=0.141 Sum_probs=62.6
Q ss_pred hcCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHHH
Q 028616 11 GRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVL 90 (206)
Q Consensus 11 ~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l~ 90 (206)
..+++|+.|+|++|. ++.-. ......+++|+.|.++.+.+... ... +...+++|++|+|++|.|+.-. .
T Consensus 49 ~~l~~L~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~l~~N~l~~~----~~~----~~~~l~~L~~L~l~~N~l~~~~-~ 117 (177)
T 2o6r_A 49 DKLTQLTKLSLSQNQ-IQSLP-DGVFDKLTKLTILYLHENKLQSL----PNG----VFDKLTQLKELALDTNQLKSVP-D 117 (177)
T ss_dssp TTCTTCSEEECCSSC-CCCCC-TTTTTTCTTCCEEECCSSCCCCC----CTT----TTTTCTTCCEEECCSSCCSCCC-T
T ss_pred cCcccccEEECCCCc-ceEeC-hhHccCCCccCEEECCCCCcccc----CHH----HhhCCcccCEEECcCCcceEeC-H
Confidence 468999999999974 55211 11234679999999987755311 111 1247899999999999877321 2
Q ss_pred HHHhCCCCccEEeeeCCCCC
Q 028616 91 KILSSCALLEFLDLRGCWDV 110 (206)
Q Consensus 91 ~il~~c~~Le~LdL~~C~~v 110 (206)
.++..+++|+.|+|+++...
T Consensus 118 ~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 118 GIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp TTTTTCTTCCEEECCSSCBC
T ss_pred HHhcCCcccCEEEecCCCee
Confidence 34567899999999999765
No 120
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=97.71 E-value=2e-05 Score=74.16 Aligned_cols=87 Identities=17% Similarity=0.234 Sum_probs=57.6
Q ss_pred HhcCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHH
Q 028616 10 AGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIV 89 (206)
Q Consensus 10 ~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l 89 (206)
...+++|++|+|++|. ++. ...+ ..|++|+.|.++.+.+... +. . ...+++|++|+|++|.++....
T Consensus 174 ~~~l~~L~~L~Ls~n~-l~~--~~~~-~~l~~L~~L~Ls~n~l~~~---~~-----~-l~~l~~L~~L~Ls~n~l~~~~~ 240 (768)
T 3rgz_A 174 SDGCGELKHLAISGNK-ISG--DVDV-SRCVNLEFLDVSSNNFSTG---IP-----F-LGDCSALQHLDISGNKLSGDFS 240 (768)
T ss_dssp TTCCTTCCEEECCSSE-EES--CCBC-TTCTTCCEEECCSSCCCSC---CC-----B-CTTCCSCCEEECCSSCCCSCHH
T ss_pred hccCCCCCEEECCCCc-ccc--cCCc-ccCCcCCEEECcCCcCCCC---Cc-----c-cccCCCCCEEECcCCcCCCccc
Confidence 4578999999999874 331 1111 5688999999976654211 11 1 2377888888888888775433
Q ss_pred HHHHhCCCCccEEeeeCCCCC
Q 028616 90 LKILSSCALLEFLDLRGCWDV 110 (206)
Q Consensus 90 ~~il~~c~~Le~LdL~~C~~v 110 (206)
..+.+|++|+.|+|++|...
T Consensus 241 -~~l~~l~~L~~L~Ls~n~l~ 260 (768)
T 3rgz_A 241 -RAISTCTELKLLNISSNQFV 260 (768)
T ss_dssp -HHTTTCSSCCEEECCSSCCE
T ss_pred -HHHhcCCCCCEEECCCCccc
Confidence 33457888888888887643
No 121
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=97.70 E-value=3.9e-06 Score=75.17 Aligned_cols=104 Identities=13% Similarity=-0.016 Sum_probs=50.5
Q ss_pred CCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHHHHH
Q 028616 13 LSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKI 92 (206)
Q Consensus 13 ~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l~~i 92 (206)
+++|+.|+|++|. ++...-..+ ..+++|+.|.|+.+.+ +......+...+++|++|+|++|.|+... .
T Consensus 119 l~~L~~L~L~~N~-l~~~~~~~~-~~l~~L~~L~Ls~N~l-------~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~---~ 186 (487)
T 3oja_A 119 GQGKKNIYLANNK-ITMLRDLDE-GCRSRVQYLDLKLNEI-------DTVNFAELAASSDTLEHLNLQYNFIYDVK---G 186 (487)
T ss_dssp CSSCEEEECCSSC-CCSGGGBCG-GGGSSEEEEECTTSCC-------CEEEGGGGGGGTTTCCEEECTTSCCCEEE---C
T ss_pred cCCCCEEECCCCC-CCCCCchhh-cCCCCCCEEECCCCCC-------CCcChHHHhhhCCcccEEecCCCcccccc---c
Confidence 4555566665553 332111111 2356666666655433 11112223335666777777666655431 1
Q ss_pred HhCCCCccEEeeeCCCCCCCChHHHHhcCCCCceeCCC
Q 028616 93 LSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPF 130 (206)
Q Consensus 93 l~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~~ 130 (206)
...+++|+.|+|++|........ ...+++|+.|.+.
T Consensus 187 ~~~l~~L~~L~Ls~N~l~~~~~~--~~~l~~L~~L~Ls 222 (487)
T 3oja_A 187 QVVFAKLKTLDLSSNKLAFMGPE--FQSAAGVTWISLR 222 (487)
T ss_dssp CCCCTTCCEEECCSSCCCEECGG--GGGGTTCSEEECT
T ss_pred cccCCCCCEEECCCCCCCCCCHh--HcCCCCccEEEec
Confidence 12466666666666654433222 2345566666553
No 122
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=97.68 E-value=2.3e-05 Score=75.32 Aligned_cols=56 Identities=18% Similarity=0.097 Sum_probs=26.5
Q ss_pred cCCCCcEEEccCCcCCHHHHHHHHhCCCCccEEeeeCCCCCCCChHHHHhcCCC-CceeCCC
Q 028616 70 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPN-LKVLGPF 130 (206)
Q Consensus 70 ~~p~Lk~L~L~~~~it~~~l~~il~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~-L~~L~~~ 130 (206)
.+++|++|+|++|.++ .+- .+..+++|+.|+|++|....+... ...+++ |+.|.+.
T Consensus 571 ~L~~L~~L~Ls~N~l~--~lp-~~~~L~~L~~L~Ls~N~l~~lp~~--l~~l~~~L~~L~Ls 627 (876)
T 4ecn_A 571 KMVKLGLLDCVHNKVR--HLE-AFGTNVKLTDLKLDYNQIEEIPED--FCAFTDQVEGLGFS 627 (876)
T ss_dssp TCTTCCEEECTTSCCC--BCC-CCCTTSEESEEECCSSCCSCCCTT--SCEECTTCCEEECC
T ss_pred cCCCCCEEECCCCCcc--cch-hhcCCCcceEEECcCCccccchHH--HhhccccCCEEECc
Confidence 4555555555555544 121 334455555666655543322211 133444 6666554
No 123
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.68 E-value=9.5e-06 Score=76.34 Aligned_cols=103 Identities=23% Similarity=0.189 Sum_probs=54.5
Q ss_pred hcCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHHH
Q 028616 11 GRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVL 90 (206)
Q Consensus 11 ~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l~ 90 (206)
..+++|+.|+|++|. ++. +..-...+++|+.|.|+.+.+. .+.. .| ..+++|+.|+|++|.|+ .+-
T Consensus 221 ~~l~~L~~L~Ls~n~-l~~--l~~~~~~l~~L~~L~Ls~N~l~----~lp~----~~-~~l~~L~~L~Ls~N~l~--~lp 286 (727)
T 4b8c_D 221 YDDQLWHALDLSNLQ-IFN--ISANIFKYDFLTRLYLNGNSLT----ELPA----EI-KNLSNLRVLDLSHNRLT--SLP 286 (727)
T ss_dssp -CCCCCCEEECTTSC-CSC--CCGGGGGCCSCSCCBCTTSCCS----CCCG----GG-GGGTTCCEEECTTSCCS--SCC
T ss_pred ccCCCCcEEECCCCC-CCC--CChhhcCCCCCCEEEeeCCcCc----ccCh----hh-hCCCCCCEEeCcCCcCC--ccC
Confidence 356788888888864 331 1111125677888877766442 1111 12 35667777777777665 222
Q ss_pred HHHhCCCCccEEeeeCCCCCCCChHHHHhcCCCCceeCC
Q 028616 91 KILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP 129 (206)
Q Consensus 91 ~il~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~ 129 (206)
.-+.++++|++|+|++|....+... ...+++|+.|.+
T Consensus 287 ~~~~~l~~L~~L~L~~N~l~~lp~~--~~~l~~L~~L~L 323 (727)
T 4b8c_D 287 AELGSCFQLKYFYFFDNMVTTLPWE--FGNLCNLQFLGV 323 (727)
T ss_dssp SSGGGGTTCSEEECCSSCCCCCCSS--TTSCTTCCCEEC
T ss_pred hhhcCCCCCCEEECCCCCCCccChh--hhcCCCccEEeC
Confidence 2234566666666666644322221 234455555554
No 124
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=97.68 E-value=2.4e-05 Score=75.26 Aligned_cols=106 Identities=20% Similarity=0.118 Sum_probs=59.9
Q ss_pred cCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCCh----HHHHHHH---hcCCCCcEEEccCCcC
Q 028616 12 RLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQD----DEANAIA---STMPKLKRLEMAYHVI 84 (206)
Q Consensus 12 ~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d----~~~~~ia---~~~p~Lk~L~L~~~~i 84 (206)
.+++|+.|+|++|...+ .+......+++|+.|.|+.+.+ ++. ..+..+. ..+|+|++|+|++|.+
T Consensus 489 ~L~~L~~L~Ls~N~l~~--~iP~~l~~L~~L~~L~Ls~N~~------lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L 560 (876)
T 4ecn_A 489 NLKDLTDVELYNCPNMT--QLPDFLYDLPELQSLNIACNRG------ISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL 560 (876)
T ss_dssp GCTTCCEEEEESCTTCC--SCCGGGGGCSSCCEEECTTCTT------SCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCC
T ss_pred cCCCCCEEECcCCCCCc--cChHHHhCCCCCCEEECcCCCC------cccccchHHHHhhhhcccccCCccEEEeeCCcC
Confidence 57778888887774332 1112224567788887765530 122 2222221 3456788888888776
Q ss_pred CHHHHHH--HHhCCCCccEEeeeCCCCCCCChHHHHhcCCCCceeCCC
Q 028616 85 STEIVLK--ILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPF 130 (206)
Q Consensus 85 t~~~l~~--il~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~~ 130 (206)
+ .+-. .+.++++|+.|+|++|....+. ....+++|+.|.+.
T Consensus 561 ~--~ip~~~~l~~L~~L~~L~Ls~N~l~~lp---~~~~L~~L~~L~Ls 603 (876)
T 4ecn_A 561 E--EFPASASLQKMVKLGLLDCVHNKVRHLE---AFGTNVKLTDLKLD 603 (876)
T ss_dssp C--BCCCHHHHTTCTTCCEEECTTSCCCBCC---CCCTTSEESEEECC
T ss_pred C--ccCChhhhhcCCCCCEEECCCCCcccch---hhcCCCcceEEECc
Confidence 6 3333 4567778888888777644333 12445566666553
No 125
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=97.67 E-value=3.7e-05 Score=68.29 Aligned_cols=35 Identities=26% Similarity=0.224 Sum_probs=18.8
Q ss_pred CCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeeccc
Q 028616 13 LSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHP 51 (206)
Q Consensus 13 ~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~ 51 (206)
+++|++|+|++|. ++. +..+ ..+++|+.|.++.+.
T Consensus 41 l~~L~~L~Ls~n~-l~~--~~~l-~~l~~L~~L~Ls~n~ 75 (457)
T 3bz5_A 41 LATLTSLDCHNSS-ITD--MTGI-EKLTGLTKLICTSNN 75 (457)
T ss_dssp HTTCCEEECCSSC-CCC--CTTG-GGCTTCSEEECCSSC
T ss_pred cCCCCEEEccCCC-ccc--Chhh-cccCCCCEEEccCCc
Confidence 5666777776653 332 1222 345666666665443
No 126
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=97.65 E-value=2.3e-06 Score=72.00 Aligned_cols=57 Identities=14% Similarity=0.072 Sum_probs=24.5
Q ss_pred cCCCCcEEEccCCcCCHHHHHHHHhCCCCccEEeeeCCCCCCCChHHHHhcCCCCceeCC
Q 028616 70 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP 129 (206)
Q Consensus 70 ~~p~Lk~L~L~~~~it~~~l~~il~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~ 129 (206)
.+++|++|+|++|.++...- .+..+++|++|+|++|.........+ ..+++|+.|.+
T Consensus 219 ~l~~L~~L~L~~N~l~~~~~--~~~~l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~L~L 275 (313)
T 1ogq_A 219 SDKNTQKIHLAKNSLAFDLG--KVGLSKNLNGLDLRNNRIYGTLPQGL-TQLKFLHSLNV 275 (313)
T ss_dssp TTSCCSEEECCSSEECCBGG--GCCCCTTCCEEECCSSCCEECCCGGG-GGCTTCCEEEC
T ss_pred cCCCCCEEECCCCceeeecC--cccccCCCCEEECcCCcccCcCChHH-hcCcCCCEEEC
Confidence 34555555555554431110 13345555555555554331111111 34455555555
No 127
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=97.63 E-value=3.2e-05 Score=68.71 Aligned_cols=97 Identities=18% Similarity=0.157 Sum_probs=73.0
Q ss_pred hcCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHHH
Q 028616 11 GRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVL 90 (206)
Q Consensus 11 ~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l~ 90 (206)
..+++|+.|+|++|. ++.- . ...+++|+.|.++.+.+.. +. + ..+++|++|+|++|.++.-.
T Consensus 61 ~~l~~L~~L~Ls~n~-l~~~--~--~~~l~~L~~L~Ls~N~l~~----~~------~-~~l~~L~~L~L~~N~l~~l~-- 122 (457)
T 3bz5_A 61 EKLTGLTKLICTSNN-ITTL--D--LSQNTNLTYLACDSNKLTN----LD------V-TPLTKLTYLNCDTNKLTKLD-- 122 (457)
T ss_dssp GGCTTCSEEECCSSC-CSCC--C--CTTCTTCSEEECCSSCCSC----CC------C-TTCTTCCEEECCSSCCSCCC--
T ss_pred cccCCCCEEEccCCc-CCeE--c--cccCCCCCEEECcCCCCce----ee------c-CCCCcCCEEECCCCcCCeec--
Confidence 468999999999984 5542 2 3567999999998775431 11 2 47899999999999987632
Q ss_pred HHHhCCCCccEEeeeCCCCCCCChHHHHhcCCCCceeCCCC
Q 028616 91 KILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPFV 131 (206)
Q Consensus 91 ~il~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~~~ 131 (206)
+..+++|+.|++++|...... ...+++|+.|....
T Consensus 123 --~~~l~~L~~L~l~~N~l~~l~----l~~l~~L~~L~l~~ 157 (457)
T 3bz5_A 123 --VSQNPLLTYLNCARNTLTEID----VSHNTQLTELDCHL 157 (457)
T ss_dssp --CTTCTTCCEEECTTSCCSCCC----CTTCTTCCEEECTT
T ss_pred --CCCCCcCCEEECCCCccceec----cccCCcCCEEECCC
Confidence 678999999999999765432 35678888887743
No 128
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=97.63 E-value=9.5e-06 Score=73.32 Aligned_cols=13 Identities=31% Similarity=0.427 Sum_probs=7.2
Q ss_pred cCCCCcEEEeccC
Q 028616 12 RLSAVTFLDLSYC 24 (206)
Q Consensus 12 ~~~~L~~L~Ls~c 24 (206)
.+++|+.|+|++|
T Consensus 351 ~l~~L~~L~l~~n 363 (562)
T 3a79_B 351 SPSSFTFLNFTQN 363 (562)
T ss_dssp SCCCCCEEECCSS
T ss_pred CCCCceEEECCCC
Confidence 4555555555554
No 129
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=97.59 E-value=8.1e-06 Score=73.79 Aligned_cols=36 Identities=19% Similarity=0.009 Sum_probs=16.8
Q ss_pred cCCCCcEEEccCCcCCHHHHHHHHhCCCCccEEeeeCCCC
Q 028616 70 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWD 109 (206)
Q Consensus 70 ~~p~Lk~L~L~~~~it~~~l~~il~~c~~Le~LdL~~C~~ 109 (206)
.+++|++|+|++|.|+.-. .. .+++|++|+|++|..
T Consensus 98 ~l~~L~~L~Ls~N~l~~lp--~~--~l~~L~~L~Ls~N~l 133 (562)
T 3a79_B 98 FNQDLEYLDVSHNRLQNIS--CC--PMASLRHLDLSFNDF 133 (562)
T ss_dssp TCTTCCEEECTTSCCCEEC--SC--CCTTCSEEECCSSCC
T ss_pred CCCCCCEEECCCCcCCccC--cc--ccccCCEEECCCCCc
Confidence 4455555555555544211 00 455555555555543
No 130
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=97.59 E-value=2.9e-06 Score=66.51 Aligned_cols=90 Identities=17% Similarity=0.076 Sum_probs=62.6
Q ss_pred HhcCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHH
Q 028616 10 AGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIV 89 (206)
Q Consensus 10 ~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l 89 (206)
...+++|+.|+|++|. ++.....+ ...+++|+.|.|+.+.+.... . .+ ...+++|++|+|++|+|+...-
T Consensus 50 ~~~l~~L~~L~Ls~N~-l~~~~~~~-~~~l~~L~~L~Ls~N~l~~~~----~---~~-~~~l~~L~~L~L~~N~l~~~~~ 119 (192)
T 1w8a_A 50 FGRLPHLVKLELKRNQ-LTGIEPNA-FEGASHIQELQLGENKIKEIS----N---KM-FLGLHQLKTLNLYDNQISCVMP 119 (192)
T ss_dssp GGGCTTCCEEECCSSC-CCCBCTTT-TTTCTTCCEEECCSCCCCEEC----S---SS-STTCTTCCEEECCSSCCCEECT
T ss_pred cccCCCCCEEECCCCC-CCCcCHhH-cCCcccCCEEECCCCcCCccC----H---HH-hcCCCCCCEEECCCCcCCeeCH
Confidence 3578999999999984 55321122 245799999999877553111 1 11 2368999999999999775321
Q ss_pred HHHHhCCCCccEEeeeCCCCC
Q 028616 90 LKILSSCALLEFLDLRGCWDV 110 (206)
Q Consensus 90 ~~il~~c~~Le~LdL~~C~~v 110 (206)
..+..+++|+.|+|+++...
T Consensus 120 -~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 120 -GSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp -TSSTTCTTCCEEECTTCCBC
T ss_pred -HHhhcCCCCCEEEeCCCCcc
Confidence 23457899999999998755
No 131
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=97.57 E-value=8.7e-06 Score=63.99 Aligned_cols=90 Identities=16% Similarity=0.091 Sum_probs=62.6
Q ss_pred HhcCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHH
Q 028616 10 AGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIV 89 (206)
Q Consensus 10 ~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l 89 (206)
...+++|+.|+|++|. |+.....+ ...+++|+.|.|+.+.+... .. .+ ...+++|++|+|++|.|+.-.
T Consensus 50 ~~~l~~L~~L~Ls~N~-i~~i~~~~-f~~l~~L~~L~Ls~N~l~~i----~~---~~-f~~l~~L~~L~L~~N~l~~~~- 118 (193)
T 2wfh_A 50 LSNYKHLTLIDLSNNR-ISTLSNQS-FSNMTQLLTLILSYNRLRCI----PP---RT-FDGLKSLRLLSLHGNDISVVP- 118 (193)
T ss_dssp GGGCTTCCEEECCSSC-CCCCCTTT-TTTCTTCCEEECCSSCCCBC----CT---TT-TTTCTTCCEEECCSSCCCBCC-
T ss_pred hhcccCCCEEECCCCc-CCEeCHhH-ccCCCCCCEEECCCCccCEe----CH---HH-hCCCCCCCEEECCCCCCCeeC-
Confidence 3468999999999974 55322112 24579999999987765321 11 11 237899999999999877421
Q ss_pred HHHHhCCCCccEEeeeCCCCC
Q 028616 90 LKILSSCALLEFLDLRGCWDV 110 (206)
Q Consensus 90 ~~il~~c~~Le~LdL~~C~~v 110 (206)
...+..+++|+.|+|+++...
T Consensus 119 ~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 119 EGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp TTTTTTCTTCCEEECCSSCEE
T ss_pred hhhhhcCccccEEEeCCCCee
Confidence 123457899999999998765
No 132
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=97.56 E-value=9.4e-06 Score=74.69 Aligned_cols=35 Identities=23% Similarity=0.038 Sum_probs=14.5
Q ss_pred hCCCCccEEeeeCCCCCCCChHHHHhcCCCCceeCC
Q 028616 94 SSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP 129 (206)
Q Consensus 94 ~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~ 129 (206)
.++++|+.|+|+++....+.... ...+++|+.|.+
T Consensus 557 ~~l~~L~~L~Ls~N~l~~l~~~~-~~~l~~L~~L~L 591 (680)
T 1ziw_A 557 KDLFELKIIDLGLNNLNTLPASV-FNNQVSLKSLNL 591 (680)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTT-TTTCTTCCEEEC
T ss_pred ccccCcceeECCCCCCCcCCHhH-hCCCCCCCEEEC
Confidence 34455555555444333222211 133455555544
No 133
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=97.55 E-value=1.1e-05 Score=67.97 Aligned_cols=14 Identities=7% Similarity=0.128 Sum_probs=6.7
Q ss_pred CCCCccEEeeeCCC
Q 028616 95 SCALLEFLDLRGCW 108 (206)
Q Consensus 95 ~c~~Le~LdL~~C~ 108 (206)
++++|+.|++++|.
T Consensus 145 ~l~~L~~L~l~~n~ 158 (332)
T 2ft3_A 145 GLRNMNCIEMGGNP 158 (332)
T ss_dssp SCSSCCEEECCSCC
T ss_pred CCccCCEEECCCCc
Confidence 44455555554443
No 134
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=97.52 E-value=3.3e-06 Score=71.23 Aligned_cols=39 Identities=23% Similarity=0.237 Sum_probs=20.1
Q ss_pred cCCCCcEEEccCCcCCHHHHHHHHhCCCCccEEeeeCCCCC
Q 028616 70 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDV 110 (206)
Q Consensus 70 ~~p~Lk~L~L~~~~it~~~l~~il~~c~~Le~LdL~~C~~v 110 (206)
.+++|++|+|++|+++. +-.-+..+++|+.|+|++|...
T Consensus 239 ~l~~L~~L~L~~N~l~~--lp~~l~~l~~L~~L~l~~N~l~ 277 (332)
T 2ft3_A 239 FLPTLRELHLDNNKLSR--VPAGLPDLKLLQVVYLHTNNIT 277 (332)
T ss_dssp GCTTCCEEECCSSCCCB--CCTTGGGCTTCCEEECCSSCCC
T ss_pred CCCCCCEEECCCCcCee--cChhhhcCccCCEEECCCCCCC
Confidence 45566666666665541 1111345566666666655433
No 135
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=97.51 E-value=1.4e-06 Score=70.15 Aligned_cols=41 Identities=22% Similarity=0.090 Sum_probs=25.1
Q ss_pred hcCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccC
Q 028616 11 GRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPL 52 (206)
Q Consensus 11 ~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~ 52 (206)
..+++|+.|+|++|..++.-... ....+++|+.|.++.+.+
T Consensus 77 ~~l~~L~~L~l~~~n~l~~i~~~-~f~~l~~L~~L~l~~n~l 117 (239)
T 2xwt_C 77 YNLSKVTHIEIRNTRNLTYIDPD-ALKELPLLKFLGIFNTGL 117 (239)
T ss_dssp ESCTTCCEEEEEEETTCCEECTT-SEECCTTCCEEEEEEECC
T ss_pred CCCcCCcEEECCCCCCeeEcCHH-HhCCCCCCCEEeCCCCCC
Confidence 35788888888874455522111 223567888888876543
No 136
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=97.47 E-value=2.4e-05 Score=72.23 Aligned_cols=88 Identities=11% Similarity=0.064 Sum_probs=42.1
Q ss_pred cCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCCh-HHHHHHH-----hcCCCCcEEEccCCcCC
Q 028616 12 RLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQD-DEANAIA-----STMPKLKRLEMAYHVIS 85 (206)
Q Consensus 12 ~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d-~~~~~ia-----~~~p~Lk~L~L~~~~it 85 (206)
++++|+.|+|++|...+ .+......+++|+.|.++.+.. ++. .-...+. ..+++|++|+|++|.++
T Consensus 247 ~l~~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~Ls~n~~------l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~ 318 (636)
T 4eco_A 247 NLKDLTDVEVYNCPNLT--KLPTFLKALPEMQLINVACNRG------ISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK 318 (636)
T ss_dssp GCTTCCEEEEECCTTCS--SCCTTTTTCSSCCEEECTTCTT------SCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS
T ss_pred ccCCCCEEEecCCcCCc--cChHHHhcCCCCCEEECcCCCC------CccccchHHHHhhhccccCCCCCEEECCCCcCC
Confidence 46667777776664222 1111123456666666654420 122 1111121 12366666666666655
Q ss_pred HHHHHH--HHhCCCCccEEeeeCCCC
Q 028616 86 TEIVLK--ILSSCALLEFLDLRGCWD 109 (206)
Q Consensus 86 ~~~l~~--il~~c~~Le~LdL~~C~~ 109 (206)
.+-. .+.++++|+.|+|++|..
T Consensus 319 --~ip~~~~l~~l~~L~~L~L~~N~l 342 (636)
T 4eco_A 319 --TFPVETSLQKMKKLGMLECLYNQL 342 (636)
T ss_dssp --SCCCHHHHTTCTTCCEEECCSCCC
T ss_pred --ccCchhhhccCCCCCEEeCcCCcC
Confidence 2322 344566666666666543
No 137
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.47 E-value=3.9e-05 Score=59.27 Aligned_cols=39 Identities=10% Similarity=0.041 Sum_probs=19.6
Q ss_pred cCCCCcEEEccCCcCCHHHHHHHHhCCCCccEEeeeCCCC
Q 028616 70 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWD 109 (206)
Q Consensus 70 ~~p~Lk~L~L~~~~it~~~l~~il~~c~~Le~LdL~~C~~ 109 (206)
.+++|++|+|++|+|+.-. ...+..+++|+.|+|+++..
T Consensus 79 ~l~~L~~L~L~~N~l~~l~-~~~~~~l~~L~~L~L~~N~~ 117 (174)
T 2r9u_A 79 KLTQLTQLDLNDNHLKSIP-RGAFDNLKSLTHIYLYNNPW 117 (174)
T ss_dssp TCTTCCEEECCSSCCCCCC-TTTTTTCTTCSEEECCSSCB
T ss_pred CcchhhEEECCCCccceeC-HHHhccccCCCEEEeCCCCc
Confidence 4556666666666544211 11233456666666655543
No 138
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=97.46 E-value=1.2e-05 Score=67.87 Aligned_cols=36 Identities=17% Similarity=0.126 Sum_probs=20.1
Q ss_pred CCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecc
Q 028616 13 LSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMH 50 (206)
Q Consensus 13 ~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~ 50 (206)
..+++.+.+.+. +....+..+...|++|+.|.|+.+
T Consensus 201 ~~~~~~l~~~~~--l~~~~~~~l~~~~~~L~~l~L~~n 236 (329)
T 3sb4_A 201 PRDINFLTIEGK--LDNADFKLIRDYMPNLVSLDISKT 236 (329)
T ss_dssp GGGCSEEEEEEC--CCHHHHHHHHHHCTTCCEEECTTB
T ss_pred ccccceEEEeee--ecHHHHHHHHHhcCCCeEEECCCC
Confidence 445555555542 455555556556666666666543
No 139
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.34 E-value=2.2e-05 Score=60.39 Aligned_cols=86 Identities=12% Similarity=-0.003 Sum_probs=44.4
Q ss_pred CCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHHHHHH
Q 028616 14 SAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKIL 93 (206)
Q Consensus 14 ~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l~~il 93 (206)
++|+.|+|++|. |+... ......+++|+.|.|+.+.+.. +... +...+++|++|+|++|+|+.-. ...+
T Consensus 30 ~~l~~L~L~~N~-i~~~~-~~~~~~l~~L~~L~Ls~N~l~~----l~~~----~f~~l~~L~~L~L~~N~l~~~~-~~~~ 98 (170)
T 3g39_A 30 TTTQVLYLYDNQ-ITKLE-PGVFDRLTQLTRLDLDNNQLTV----LPAG----VFDKLTQLTQLSLNDNQLKSIP-RGAF 98 (170)
T ss_dssp TTCSEEECCSSC-CCCCC-TTTTTTCTTCSEEECCSSCCCC----CCTT----TTTTCTTCCEEECCSSCCCCCC-TTTT
T ss_pred CCCcEEEcCCCc-CCccC-hhhhcCcccCCEEECCCCCcCc----cChh----hccCCCCCCEEECCCCccCEeC-HHHh
Confidence 566777777653 33211 1112345667777776554421 1110 1235677777777777655311 1124
Q ss_pred hCCCCccEEeeeCCCCC
Q 028616 94 SSCALLEFLDLRGCWDV 110 (206)
Q Consensus 94 ~~c~~Le~LdL~~C~~v 110 (206)
.++++|+.|+|+++...
T Consensus 99 ~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 99 DNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp TTCTTCCEEECCSSCBC
T ss_pred cCCCCCCEEEeCCCCCC
Confidence 45677777777766543
No 140
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=97.30 E-value=3.8e-05 Score=72.21 Aligned_cols=85 Identities=20% Similarity=0.097 Sum_probs=61.0
Q ss_pred cCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHHHH
Q 028616 12 RLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLK 91 (206)
Q Consensus 12 ~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l~~ 91 (206)
.+++|+.|+|++| .|+ .+..-...+++|+.|.|+.+.+. .+.. .| ..+++|++|+|++|.|+. +-.
T Consensus 245 ~l~~L~~L~Ls~N-~l~--~lp~~~~~l~~L~~L~Ls~N~l~----~lp~----~~-~~l~~L~~L~L~~N~l~~--lp~ 310 (727)
T 4b8c_D 245 KYDFLTRLYLNGN-SLT--ELPAEIKNLSNLRVLDLSHNRLT----SLPA----EL-GSCFQLKYFYFFDNMVTT--LPW 310 (727)
T ss_dssp GCCSCSCCBCTTS-CCS--CCCGGGGGGTTCCEEECTTSCCS----SCCS----SG-GGGTTCSEEECCSSCCCC--CCS
T ss_pred CCCCCCEEEeeCC-cCc--ccChhhhCCCCCCEEeCcCCcCC----ccCh----hh-cCCCCCCEEECCCCCCCc--cCh
Confidence 5899999999997 465 33222356799999999877653 1111 12 378999999999998762 222
Q ss_pred HHhCCCCccEEeeeCCCCC
Q 028616 92 ILSSCALLEFLDLRGCWDV 110 (206)
Q Consensus 92 il~~c~~Le~LdL~~C~~v 110 (206)
-+.++++|+.|+|++|...
T Consensus 311 ~~~~l~~L~~L~L~~N~l~ 329 (727)
T 4b8c_D 311 EFGNLCNLQFLGVEGNPLE 329 (727)
T ss_dssp STTSCTTCCCEECTTSCCC
T ss_pred hhhcCCCccEEeCCCCccC
Confidence 2567899999999998755
No 141
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=97.28 E-value=0.00035 Score=64.07 Aligned_cols=10 Identities=20% Similarity=0.135 Sum_probs=5.2
Q ss_pred CCcEEEeccC
Q 028616 15 AVTFLDLSYC 24 (206)
Q Consensus 15 ~L~~L~Ls~c 24 (206)
+|+.|+|++|
T Consensus 60 ~L~~L~Ls~n 69 (571)
T 3cvr_A 60 QFSELQLNRL 69 (571)
T ss_dssp TCSEEECCSS
T ss_pred CccEEEeCCC
Confidence 4555555544
No 142
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.14 E-value=9.1e-05 Score=56.80 Aligned_cols=102 Identities=14% Similarity=0.091 Sum_probs=68.1
Q ss_pred CCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHHHHHHh
Q 028616 15 AVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILS 94 (206)
Q Consensus 15 ~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l~~il~ 94 (206)
..+.|+++++. ++. +.. ...++|+.|.|+.+.+... .. . ....+++|++|+|++|+|+.-. ..++.
T Consensus 10 ~~~~l~~s~n~-l~~--ip~--~~~~~l~~L~L~~N~i~~~----~~---~-~~~~l~~L~~L~Ls~N~l~~l~-~~~f~ 75 (170)
T 3g39_A 10 SGTTVDCSGKS-LAS--VPT--GIPTTTQVLYLYDNQITKL----EP---G-VFDRLTQLTRLDLDNNQLTVLP-AGVFD 75 (170)
T ss_dssp ETTEEECTTSC-CSS--CCS--CCCTTCSEEECCSSCCCCC----CT---T-TTTTCTTCSEEECCSSCCCCCC-TTTTT
T ss_pred CCCEEEeCCCC-cCc--cCc--cCCCCCcEEEcCCCcCCcc----Ch---h-hhcCcccCCEEECCCCCcCccC-hhhcc
Confidence 36789998863 442 111 1248899999987755321 11 1 1237899999999999977421 12346
Q ss_pred CCCCccEEeeeCCCCCCCChHHHHhcCCCCceeCCCC
Q 028616 95 SCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPFV 131 (206)
Q Consensus 95 ~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~~~ 131 (206)
++++|+.|+|+++....+....+ ..+++|+.|.+..
T Consensus 76 ~l~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~L~~ 111 (170)
T 3g39_A 76 KLTQLTQLSLNDNQLKSIPRGAF-DNLKSLTHIWLLN 111 (170)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTT-TTCTTCCEEECCS
T ss_pred CCCCCCEEECCCCccCEeCHHHh-cCCCCCCEEEeCC
Confidence 89999999999997654444322 5678888888755
No 143
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.11 E-value=0.00012 Score=56.55 Aligned_cols=101 Identities=12% Similarity=0.088 Sum_probs=67.0
Q ss_pred CcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHHHHHHhC
Q 028616 16 VTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSS 95 (206)
Q Consensus 16 L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l~~il~~ 95 (206)
-+.|+++++. ++. +.. ...++|+.|.|+.+.+... .. .....+++|++|+|++|+|+.-. ..++.+
T Consensus 14 ~~~l~~~~n~-l~~--iP~--~~~~~L~~L~Ls~N~l~~~----~~----~~~~~l~~L~~L~Ls~N~l~~i~-~~~~~~ 79 (174)
T 2r9u_A 14 QTLVNCQNIR-LAS--VPA--GIPTDKQRLWLNNNQITKL----EP----GVFDHLVNLQQLYFNSNKLTAIP-TGVFDK 79 (174)
T ss_dssp SSEEECCSSC-CSS--CCS--CCCTTCSEEECCSSCCCCC----CT----TTTTTCTTCCEEECCSSCCCCCC-TTTTTT
T ss_pred CcEEEeCCCC-CCc--cCC--CcCCCCcEEEeCCCCcccc----CH----HHhcCCcCCCEEECCCCCCCccC-hhHhCC
Confidence 4678888863 331 111 1238899999987755311 11 11237899999999999977521 123467
Q ss_pred CCCccEEeeeCCCCCCCChHHHHhcCCCCceeCCCC
Q 028616 96 CALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPFV 131 (206)
Q Consensus 96 c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~~~ 131 (206)
+++|+.|+|+++....+....+ ..+++|+.|.+..
T Consensus 80 l~~L~~L~L~~N~l~~l~~~~~-~~l~~L~~L~L~~ 114 (174)
T 2r9u_A 80 LTQLTQLDLNDNHLKSIPRGAF-DNLKSLTHIYLYN 114 (174)
T ss_dssp CTTCCEEECCSSCCCCCCTTTT-TTCTTCSEEECCS
T ss_pred cchhhEEECCCCccceeCHHHh-ccccCCCEEEeCC
Confidence 8999999999987664444322 5678888888754
No 144
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=97.09 E-value=0.00042 Score=64.17 Aligned_cols=39 Identities=13% Similarity=-0.021 Sum_probs=20.7
Q ss_pred cCCCCcEEEccCCcCCHHHHHHHHhCCCCccEEeeeCCCCC
Q 028616 70 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDV 110 (206)
Q Consensus 70 ~~p~Lk~L~L~~~~it~~~l~~il~~c~~Le~LdL~~C~~v 110 (206)
.+++|++|+|++|.|+ .+-..+.++++|+.|+|++|...
T Consensus 259 ~~~~L~~L~Ls~N~L~--~lp~~l~~l~~L~~L~L~~N~l~ 297 (622)
T 3g06_A 259 LPSGLLSLSVYRNQLT--RLPESLIHLSSETTVNLEGNPLS 297 (622)
T ss_dssp CCTTCCEEECCSSCCC--SCCGGGGGSCTTCEEECCSCCCC
T ss_pred ccccCcEEeCCCCCCC--cCCHHHhhccccCEEEecCCCCC
Confidence 3455666666666555 12222445666666666665543
No 145
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=96.97 E-value=0.00045 Score=63.34 Aligned_cols=13 Identities=8% Similarity=-0.353 Sum_probs=5.9
Q ss_pred CCCccEEeeeCCC
Q 028616 96 CALLEFLDLRGCW 108 (206)
Q Consensus 96 c~~Le~LdL~~C~ 108 (206)
+++|+.|+|++|.
T Consensus 229 l~~L~~L~L~~N~ 241 (571)
T 3cvr_A 229 LDPTCTIILEDNP 241 (571)
T ss_dssp SCTTEEEECCSSS
T ss_pred CCCCCEEEeeCCc
Confidence 4444444444443
No 146
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=96.95 E-value=0.00039 Score=66.05 Aligned_cols=39 Identities=23% Similarity=0.158 Sum_probs=20.8
Q ss_pred cCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccC
Q 028616 12 RLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPL 52 (206)
Q Consensus 12 ~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~ 52 (206)
.+++|+.|+|++|. ++.....+ ...+++|+.|.|+.+.+
T Consensus 336 ~l~~L~~L~L~~N~-i~~~~~~~-~~~l~~L~~L~Ls~N~l 374 (844)
T 3j0a_A 336 GLPKVAYIDLQKNH-IAIIQDQT-FKFLEKLQTLDLRDNAL 374 (844)
T ss_dssp SCTTCCEEECCSCC-CCCCCSSC-SCSCCCCCEEEEETCCS
T ss_pred CCCCCCEEECCCCC-CCccChhh-hcCCCCCCEEECCCCCC
Confidence 46677777777663 33211111 13456777777765543
No 147
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=96.94 E-value=0.0014 Score=60.60 Aligned_cols=55 Identities=11% Similarity=-0.046 Sum_probs=33.4
Q ss_pred cCCCCcEEEccCCcCCHHHHHHHHhCCCCccEEeeeCCCCCCCChHHHHhcCCCCceeCCCC
Q 028616 70 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPFV 131 (206)
Q Consensus 70 ~~p~Lk~L~L~~~~it~~~l~~il~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~~~ 131 (206)
.+++|++|+|++|.|+. |-..+++|+.|+|++|....+... ...+++|+.|.+..
T Consensus 239 ~l~~L~~L~Ls~N~L~~-----lp~~~~~L~~L~Ls~N~L~~lp~~--l~~l~~L~~L~L~~ 293 (622)
T 3g06_A 239 LPSELKELMVSGNRLTS-----LPMLPSGLLSLSVYRNQLTRLPES--LIHLSSETTVNLEG 293 (622)
T ss_dssp CCTTCCEEECCSSCCSC-----CCCCCTTCCEEECCSSCCCSCCGG--GGGSCTTCEEECCS
T ss_pred CCCcCcEEECCCCCCCc-----CCcccccCcEEeCCCCCCCcCCHH--HhhccccCEEEecC
Confidence 45667777777776552 112567777777777755433322 25677788777743
No 148
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=96.91 E-value=8.1e-05 Score=62.89 Aligned_cols=89 Identities=18% Similarity=0.076 Sum_probs=55.8
Q ss_pred hcCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHHH
Q 028616 11 GRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVL 90 (206)
Q Consensus 11 ~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l~ 90 (206)
..+++|+.|+|+++.+++.-.- .....+++|+.|.|+.+.+.. +... ....+++|++|+|++|+|+.-. .
T Consensus 28 ~~~~~L~~L~l~~~n~l~~~~~-~~~~~l~~L~~L~l~~N~l~~----~~~~----~~~~l~~L~~L~l~~N~l~~~~-~ 97 (347)
T 2ifg_A 28 PGAENLTELYIENQQHLQHLEL-RDLRGLGELRNLTIVKSGLRF----VAPD----AFHFTPRLSRLNLSFNALESLS-W 97 (347)
T ss_dssp CSCSCCSEEECCSCSSCCEECG-GGSCSCCCCSEEECCSSCCCE----ECTT----GGGSCSCCCEEECCSSCCSCCC-S
T ss_pred CCCCCeeEEEccCCCCCCCcCh-hHhccccCCCEEECCCCccce----eCHH----HhcCCcCCCEEeCCCCccceeC-H
Confidence 3567899999986334552211 122457899999998765421 1111 1237899999999999876321 1
Q ss_pred HHHhCCCCccEEeeeCCCCC
Q 028616 91 KILSSCALLEFLDLRGCWDV 110 (206)
Q Consensus 91 ~il~~c~~Le~LdL~~C~~v 110 (206)
.++..++ |+.|+|.++...
T Consensus 98 ~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 98 KTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp TTTCSCC-CCEEECCSSCCC
T ss_pred HHcccCC-ceEEEeeCCCcc
Confidence 1233334 999999888755
No 149
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=96.61 E-value=0.0044 Score=54.75 Aligned_cols=33 Identities=12% Similarity=0.213 Sum_probs=16.4
Q ss_pred CCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecc
Q 028616 14 SAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMH 50 (206)
Q Consensus 14 ~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~ 50 (206)
++|++|+|++|. ++. +.. ...+++|+.|.++.+
T Consensus 131 ~~L~~L~L~~n~-l~~--lp~-~~~l~~L~~L~l~~N 163 (454)
T 1jl5_A 131 PLLEYLGVSNNQ-LEK--LPE-LQNSSFLKIIDVDNN 163 (454)
T ss_dssp TTCCEEECCSSC-CSS--CCC-CTTCTTCCEEECCSS
T ss_pred CCCCEEECcCCC-CCC--Ccc-cCCCCCCCEEECCCC
Confidence 456666666652 331 222 234555666665544
No 150
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=96.56 E-value=0.00049 Score=57.91 Aligned_cols=110 Identities=19% Similarity=0.148 Sum_probs=68.7
Q ss_pred HHHHHHHHhcCCCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCc-EEEccC
Q 028616 3 DSIVAQIAGRLSAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLK-RLEMAY 81 (206)
Q Consensus 3 d~~l~~l~~~~~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk-~L~L~~ 81 (206)
...+..+...|++|+.|+|++|. ++.-+-. ....|++|+.|.|..+ +. .+.. .++ ..|++|+ .|.|..
T Consensus 215 ~~~~~~l~~~~~~L~~l~L~~n~-i~~I~~~-aF~~~~~L~~l~l~~n-i~----~I~~---~aF-~~~~~L~~~l~l~~ 283 (329)
T 3sb4_A 215 NADFKLIRDYMPNLVSLDISKTN-ATTIPDF-TFAQKKYLLKIKLPHN-LK----TIGQ---RVF-SNCGRLAGTLELPA 283 (329)
T ss_dssp HHHHHHHHHHCTTCCEEECTTBC-CCEECTT-TTTTCTTCCEEECCTT-CC----EECT---TTT-TTCTTCCEEEEECT
T ss_pred HHHHHHHHHhcCCCeEEECCCCC-cceecHh-hhhCCCCCCEEECCcc-cc----eehH---HHh-hCChhccEEEEEcc
Confidence 34455666679999999999853 4422221 2356889999988643 21 1121 122 3788999 999987
Q ss_pred Cc--CCHHHHHHHHhCCCCccEEeeeCCCCCCCChHHHHhcCCCCceeC
Q 028616 82 HV--ISTEIVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLG 128 (206)
Q Consensus 82 ~~--it~~~l~~il~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~ 128 (206)
.- |...+ ..+|++|+.|++.+.....+....+ ..|++|+.+.
T Consensus 284 ~l~~I~~~a----F~~c~~L~~l~l~~n~i~~I~~~aF-~~~~~L~~ly 327 (329)
T 3sb4_A 284 SVTAIEFGA----FMGCDNLRYVLATGDKITTLGDELF-GNGVPSKLIY 327 (329)
T ss_dssp TCCEECTTT----TTTCTTEEEEEECSSCCCEECTTTT-CTTCCCCEEE
T ss_pred cceEEchhh----hhCCccCCEEEeCCCccCccchhhh-cCCcchhhhc
Confidence 31 43333 3589999999987665443344333 5678888764
No 151
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=96.34 E-value=0.00053 Score=57.82 Aligned_cols=100 Identities=14% Similarity=-0.052 Sum_probs=63.1
Q ss_pred EEEeccCCCCCHHHHHHHHhcCCCCceEEeec-ccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcCCHHHHHHHHhCC
Q 028616 18 FLDLSYCSKIGAPALEAIGKHCKLLVVLCRNM-HPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVISTEIVLKILSSC 96 (206)
Q Consensus 18 ~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~-~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~it~~~l~~il~~c 96 (206)
.+++++...++. +.. ...+++|+.|.|+. +.+. .+... ....+++|++|+|++|+|+... ...+.++
T Consensus 12 ~v~~~~~n~l~~--ip~-l~~~~~L~~L~l~~~n~l~----~~~~~----~~~~l~~L~~L~l~~N~l~~~~-~~~~~~l 79 (347)
T 2ifg_A 12 GLRCTRDGALDS--LHH-LPGAENLTELYIENQQHLQ----HLELR----DLRGLGELRNLTIVKSGLRFVA-PDAFHFT 79 (347)
T ss_dssp CEECCSSCCCTT--TTT-SCSCSCCSEEECCSCSSCC----EECGG----GSCSCCCCSEEECCSSCCCEEC-TTGGGSC
T ss_pred EEEcCCCCCCCc--cCC-CCCCCCeeEEEccCCCCCC----CcChh----HhccccCCCEEECCCCccceeC-HHHhcCC
Confidence 467766524542 444 45567899999974 6442 11111 1237899999999999877632 1234689
Q ss_pred CCccEEeeeCCCCCCCChHHHHhcCCCCceeCCCC
Q 028616 97 ALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPFV 131 (206)
Q Consensus 97 ~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~~~ 131 (206)
++|+.|+|+++....+....+ ...+ |+.|.+..
T Consensus 80 ~~L~~L~l~~N~l~~~~~~~~-~~~~-L~~l~l~~ 112 (347)
T 2ifg_A 80 PRLSRLNLSFNALESLSWKTV-QGLS-LQELVLSG 112 (347)
T ss_dssp SCCCEEECCSSCCSCCCSTTT-CSCC-CCEEECCS
T ss_pred cCCCEEeCCCCccceeCHHHc-ccCC-ceEEEeeC
Confidence 999999999987654443222 2222 77776643
No 152
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=96.27 E-value=0.0086 Score=52.86 Aligned_cols=35 Identities=14% Similarity=0.101 Sum_probs=17.5
Q ss_pred cCCCCcEEEccCCcCCHHHHHHHHhCCCCccEEeeeCCCC
Q 028616 70 TMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWD 109 (206)
Q Consensus 70 ~~p~Lk~L~L~~~~it~~~l~~il~~c~~Le~LdL~~C~~ 109 (206)
.+++|++|++++|+++. +-...++|++|++++|..
T Consensus 151 ~l~~L~~L~l~~N~l~~-----lp~~~~~L~~L~L~~n~l 185 (454)
T 1jl5_A 151 NSSFLKIIDVDNNSLKK-----LPDLPPSLEFIAAGNNQL 185 (454)
T ss_dssp TCTTCCEEECCSSCCSC-----CCCCCTTCCEEECCSSCC
T ss_pred CCCCCCEEECCCCcCcc-----cCCCcccccEEECcCCcC
Confidence 45566666666665442 111234555555555543
No 153
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=94.01 E-value=0.0056 Score=53.43 Aligned_cols=13 Identities=23% Similarity=0.007 Sum_probs=9.0
Q ss_pred cCCCCcEEEeccC
Q 028616 12 RLSAVTFLDLSYC 24 (206)
Q Consensus 12 ~~~~L~~L~Ls~c 24 (206)
.|++|+.|+|+.+
T Consensus 178 ~c~~L~~l~l~~n 190 (401)
T 4fdw_A 178 YCYNLKKADLSKT 190 (401)
T ss_dssp TCTTCCEEECTTS
T ss_pred CcccCCeeecCCC
Confidence 4777777777653
No 154
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=93.82 E-value=0.0066 Score=51.35 Aligned_cols=13 Identities=23% Similarity=0.370 Sum_probs=9.1
Q ss_pred cCCCCcEEEeccC
Q 028616 12 RLSAVTFLDLSYC 24 (206)
Q Consensus 12 ~~~~L~~L~Ls~c 24 (206)
.+++|+.|++++|
T Consensus 102 ~l~~L~~L~l~~n 114 (350)
T 4ay9_X 102 NLPNLQYLLISNT 114 (350)
T ss_dssp CCTTCCEEEEEEE
T ss_pred hcccccccccccc
Confidence 4677777777765
No 155
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=92.76 E-value=0.0054 Score=51.89 Aligned_cols=86 Identities=12% Similarity=0.033 Sum_probs=51.4
Q ss_pred CCCcEEEeccCCCCCHHHHHH-HHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEE-EccCCcCCHHHHHH
Q 028616 14 SAVTFLDLSYCSKIGAPALEA-IGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRL-EMAYHVISTEIVLK 91 (206)
Q Consensus 14 ~~L~~L~Ls~c~~it~~~l~~-l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L-~L~~~~it~~~l~~ 91 (206)
++|++|+|++| +|+. +.. ....+++|+.|.|+.+.+.. .+... ...++++|+++ .+.+|+|+.-. ..
T Consensus 30 ~~l~~L~Ls~N-~i~~--i~~~~f~~l~~L~~L~Ls~N~i~~---~i~~~----~f~~L~~l~~~l~~~~N~l~~l~-~~ 98 (350)
T 4ay9_X 30 RNAIELRFVLT-KLRV--IQKGAFSGFGDLEKIEISQNDVLE---VIEAD----VFSNLPKLHEIRIEKANNLLYIN-PE 98 (350)
T ss_dssp TTCSEEEEESC-CCSE--ECTTSSTTCTTCCEEEEECCTTCC---EECTT----SBCSCTTCCEEEEEEETTCCEEC-TT
T ss_pred CCCCEEEccCC-cCCC--cCHHHHcCCCCCCEEECcCCCCCC---ccChh----HhhcchhhhhhhcccCCcccccC-ch
Confidence 57999999986 4652 211 12457899999998664310 01110 12366777764 44455555321 12
Q ss_pred HHhCCCCccEEeeeCCCCC
Q 028616 92 ILSSCALLEFLDLRGCWDV 110 (206)
Q Consensus 92 il~~c~~Le~LdL~~C~~v 110 (206)
.+.++++|++|++++|...
T Consensus 99 ~f~~l~~L~~L~l~~n~l~ 117 (350)
T 4ay9_X 99 AFQNLPNLQYLLISNTGIK 117 (350)
T ss_dssp SBCCCTTCCEEEEEEECCS
T ss_pred hhhhccccccccccccccc
Confidence 2467899999999988654
No 156
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=92.42 E-value=0.016 Score=50.56 Aligned_cols=82 Identities=16% Similarity=0.177 Sum_probs=35.8
Q ss_pred CCCcEEEeccCCCCCHHHHHHHHhcCCCCceEEeecccCCCCC-CCCChHHHHHHHhcCCCCcEEEccCCc--CCHHHHH
Q 028616 14 SAVTFLDLSYCSKIGAPALEAIGKHCKLLVVLCRNMHPLDTAD-KLSQDDEANAIASTMPKLKRLEMAYHV--ISTEIVL 90 (206)
Q Consensus 14 ~~L~~L~Ls~c~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g-~~v~d~~~~~ia~~~p~Lk~L~L~~~~--it~~~l~ 90 (206)
.+|+.|.|... ++.-+-. ....|++|+.|.+..+.+.... ..+... + ...|++|+.|.|..+- |...+
T Consensus 248 ~~L~~i~lp~~--i~~I~~~-aF~~c~~L~~l~l~~~~~~~~~~~~I~~~---a-F~~c~~L~~l~l~~~i~~I~~~a-- 318 (401)
T 4fdw_A 248 SGITTVKLPNG--VTNIASR-AFYYCPELAEVTTYGSTFNDDPEAMIHPY---C-LEGCPKLARFEIPESIRILGQGL-- 318 (401)
T ss_dssp CCCSEEEEETT--CCEECTT-TTTTCTTCCEEEEESSCCCCCTTCEECTT---T-TTTCTTCCEECCCTTCCEECTTT--
T ss_pred CCccEEEeCCC--ccEEChh-HhhCCCCCCEEEeCCccccCCcccEECHH---H-hhCCccCCeEEeCCceEEEhhhh--
Confidence 45667766542 2211111 1245677777766533221000 001111 1 1256666666665321 22222
Q ss_pred HHHhCCCCccEEeeeC
Q 028616 91 KILSSCALLEFLDLRG 106 (206)
Q Consensus 91 ~il~~c~~Le~LdL~~ 106 (206)
..+|++|+.|.|..
T Consensus 319 --F~~c~~L~~l~lp~ 332 (401)
T 4fdw_A 319 --LGGNRKVTQLTIPA 332 (401)
T ss_dssp --TTTCCSCCEEEECT
T ss_pred --hcCCCCccEEEECc
Confidence 23566666666643
No 157
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=91.17 E-value=0.0071 Score=52.02 Aligned_cols=32 Identities=19% Similarity=0.452 Sum_probs=15.0
Q ss_pred cCCCCcEEEccCCc--CCHHHHHHHHhCCCCccEEeee
Q 028616 70 TMPKLKRLEMAYHV--ISTEIVLKILSSCALLEFLDLR 105 (206)
Q Consensus 70 ~~p~Lk~L~L~~~~--it~~~l~~il~~c~~Le~LdL~ 105 (206)
.|++|+.+.|..+- |...+ ..+|++|+.+.|.
T Consensus 318 ~c~~L~~i~lp~~v~~I~~~a----F~~c~~L~~i~lp 351 (394)
T 4fs7_A 318 SCTSLVSIDLPYLVEEIGKRS----FRGCTSLSNINFP 351 (394)
T ss_dssp TCTTCCEECCCTTCCEECTTT----TTTCTTCCEECCC
T ss_pred CCCCCCEEEeCCcccEEhHHh----ccCCCCCCEEEEC
Confidence 45556665554321 22222 2355566655554
No 158
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=90.46 E-value=0.051 Score=46.59 Aligned_cols=100 Identities=13% Similarity=0.168 Sum_probs=49.4
Q ss_pred cCCCCcEEEeccC-CCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCc--CCHHH
Q 028616 12 RLSAVTFLDLSYC-SKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHV--ISTEI 88 (206)
Q Consensus 12 ~~~~L~~L~Ls~c-~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~--it~~~ 88 (206)
.|++|+.+.|... ..|... ....|++|+.+.+... +. .+.. .++ ..|.+|+.+.|..+- |.+.+
T Consensus 263 ~c~~L~~i~lp~~~~~I~~~----aF~~c~~L~~i~l~~~-i~----~I~~---~aF-~~c~~L~~i~lp~~v~~I~~~a 329 (394)
T 4gt6_A 263 SCAYLASVKMPDSVVSIGTG----AFMNCPALQDIEFSSR-IT----ELPE---SVF-AGCISLKSIDIPEGITQILDDA 329 (394)
T ss_dssp TCSSCCEEECCTTCCEECTT----TTTTCTTCCEEECCTT-CC----EECT---TTT-TTCTTCCEEECCTTCCEECTTT
T ss_pred ecccccEEecccccceecCc----ccccccccccccCCCc-cc----ccCc---eee-cCCCCcCEEEeCCcccEehHhH
Confidence 4677777777553 112211 1235677777766422 10 1111 112 366777777776541 33332
Q ss_pred HHHHHhCCCCccEEeeeCCCCCCCChHHHHhcCCCCceeCCC
Q 028616 89 VLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGPF 130 (206)
Q Consensus 89 l~~il~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~~ 130 (206)
..+|++|+.+.|-..-. .+...+ -..|.+|+.+.+.
T Consensus 330 ----F~~C~~L~~i~ip~sv~-~I~~~a-F~~C~~L~~i~~~ 365 (394)
T 4gt6_A 330 ----FAGCEQLERIAIPSSVT-KIPESA-FSNCTALNNIEYS 365 (394)
T ss_dssp ----TTTCTTCCEEEECTTCC-BCCGGG-GTTCTTCCEEEES
T ss_pred ----hhCCCCCCEEEECcccC-EEhHhH-hhCCCCCCEEEEC
Confidence 24677777777743211 112222 2566777766553
No 159
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=88.62 E-value=0.098 Score=44.76 Aligned_cols=98 Identities=16% Similarity=0.164 Sum_probs=57.8
Q ss_pred hcCCCCcEEEeccC-CCCCHHHHHHHHhcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCc--CCHH
Q 028616 11 GRLSAVTFLDLSYC-SKIGAPALEAIGKHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHV--ISTE 87 (206)
Q Consensus 11 ~~~~~L~~L~Ls~c-~~it~~~l~~l~~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~--it~~ 87 (206)
..|++|+.+.+... ..|...+ ...|.+|+.+.|... +. .+.+ .++ ..|.+|+++.|..+- |...
T Consensus 285 ~~c~~L~~i~l~~~i~~I~~~a----F~~c~~L~~i~lp~~-v~----~I~~---~aF-~~C~~L~~i~ip~sv~~I~~~ 351 (394)
T 4gt6_A 285 MNCPALQDIEFSSRITELPESV----FAGCISLKSIDIPEG-IT----QILD---DAF-AGCEQLERIAIPSSVTKIPES 351 (394)
T ss_dssp TTCTTCCEEECCTTCCEECTTT----TTTCTTCCEEECCTT-CC----EECT---TTT-TTCTTCCEEEECTTCCBCCGG
T ss_pred ccccccccccCCCcccccCcee----ecCCCCcCEEEeCCc-cc----EehH---hHh-hCCCCCCEEEECcccCEEhHh
Confidence 35899999999753 2233222 357899999998632 21 1222 222 388999999997652 5444
Q ss_pred HHHHHHhCCCCccEEeeeCCCCCCCChHHHHhcCCCCceeCC
Q 028616 88 IVLKILSSCALLEFLDLRGCWDVKLDDKFMKGNFPNLKVLGP 129 (206)
Q Consensus 88 ~l~~il~~c~~Le~LdL~~C~~v~~~~~~l~~~~~~L~~L~~ 129 (206)
+ ..+|++|+.+.+.+.... ......|..|+.+..
T Consensus 352 a----F~~C~~L~~i~~~~~~~~----~~~~~~~~~L~~i~i 385 (394)
T 4gt6_A 352 A----FSNCTALNNIEYSGSRSQ----WNAISTDSGLQNLPV 385 (394)
T ss_dssp G----GTTCTTCCEEEESSCHHH----HHTCBCCCCC-----
T ss_pred H----hhCCCCCCEEEECCceee----hhhhhccCCCCEEEe
Confidence 4 358999999999874321 111245666776654
No 160
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=88.41 E-value=0.034 Score=47.18 Aligned_cols=57 Identities=18% Similarity=0.161 Sum_probs=34.3
Q ss_pred hcCCCCcEEEccCCcCCHHHHHHHHhCCCCccEEeeeCC-CCCCCChHHHHhcCCCCceeCC
Q 028616 69 STMPKLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGC-WDVKLDDKFMKGNFPNLKVLGP 129 (206)
Q Consensus 69 ~~~p~Lk~L~L~~~~it~~~l~~il~~c~~Le~LdL~~C-~~v~~~~~~l~~~~~~L~~L~~ 129 (206)
..|++|+.+.+..+.|+.-+-. ...+|++|+.+.|... ..+ ...+. ..|.+|+.+.+
T Consensus 283 ~~c~~L~~i~l~~~~i~~I~~~-aF~~c~~L~~i~lp~~l~~I--~~~aF-~~C~~L~~i~i 340 (379)
T 4h09_A 283 SGCSNLTKVVMDNSAIETLEPR-VFMDCVKLSSVTLPTALKTI--QVYAF-KNCKALSTISY 340 (379)
T ss_dssp TTCTTCCEEEECCTTCCEECTT-TTTTCTTCCEEECCTTCCEE--CTTTT-TTCTTCCCCCC
T ss_pred ccccccccccccccccceehhh-hhcCCCCCCEEEcCccccEE--HHHHh-hCCCCCCEEEE
Confidence 3778888888877654432211 1357888988888532 222 22222 56777777765
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=80.40 E-value=0.52 Score=34.23 Aligned_cols=37 Identities=11% Similarity=-0.054 Sum_probs=21.7
Q ss_pred CCcEEEccCCcCCHHHHHHHHhCCCCccEEeeeCCCCC
Q 028616 73 KLKRLEMAYHVISTEIVLKILSSCALLEFLDLRGCWDV 110 (206)
Q Consensus 73 ~Lk~L~L~~~~it~~~l~~il~~c~~Le~LdL~~C~~v 110 (206)
+|++|+|++|+|+.-.- .++..+++|+.|+|+++...
T Consensus 32 ~l~~L~Ls~N~l~~l~~-~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPP-GLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TCSEEECTTSCCSSCCT-TTGGGCTTCCEEECCSSCCB
T ss_pred CCCEEECCCCcCCccCh-hhhhhccccCEEEecCCCee
Confidence 57777777776544221 22345667777777766554
No 162
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=77.28 E-value=0.27 Score=41.48 Aligned_cols=58 Identities=12% Similarity=0.190 Sum_probs=35.1
Q ss_pred hcCCCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCC-c-CCHHHHHHHHhCCCCccEEeeeC
Q 028616 37 KHCKLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYH-V-ISTEIVLKILSSCALLEFLDLRG 106 (206)
Q Consensus 37 ~~c~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~-~-it~~~l~~il~~c~~Le~LdL~~ 106 (206)
..|++|+.+.+....+. .+.. .++ ..|.+|+.+.|..+ . |...+. .+|++|+.+.|..
T Consensus 283 ~~c~~L~~i~l~~~~i~----~I~~---~aF-~~c~~L~~i~lp~~l~~I~~~aF----~~C~~L~~i~ip~ 342 (379)
T 4h09_A 283 SGCSNLTKVVMDNSAIE----TLEP---RVF-MDCVKLSSVTLPTALKTIQVYAF----KNCKALSTISYPK 342 (379)
T ss_dssp TTCTTCCEEEECCTTCC----EECT---TTT-TTCTTCCEEECCTTCCEECTTTT----TTCTTCCCCCCCT
T ss_pred ccccccccccccccccc----eehh---hhh-cCCCCCCEEEcCccccEEHHHHh----hCCCCCCEEEECC
Confidence 45667777766432221 1111 122 38899999999754 1 444433 5899999988853
No 163
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=69.61 E-value=0.77 Score=39.05 Aligned_cols=32 Identities=28% Similarity=0.412 Sum_probs=15.4
Q ss_pred cCCCCcEEEccCCc--CCHHHHHHHHhCCCCccEEeee
Q 028616 70 TMPKLKRLEMAYHV--ISTEIVLKILSSCALLEFLDLR 105 (206)
Q Consensus 70 ~~p~Lk~L~L~~~~--it~~~l~~il~~c~~Le~LdL~ 105 (206)
.|.+|+.+.+..+- |...+ ..+|++|+.++|.
T Consensus 295 ~~~~L~~i~l~~~i~~I~~~a----F~~c~~L~~i~lp 328 (394)
T 4fs7_A 295 GCSSLTEVKLLDSVKFIGEEA----FESCTSLVSIDLP 328 (394)
T ss_dssp TCTTCCEEEECTTCCEECTTT----TTTCTTCCEECCC
T ss_pred ccccccccccccccceechhh----hcCCCCCCEEEeC
Confidence 45566666554431 32222 2355666666553
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=62.85 E-value=7.5 Score=27.84 Aligned_cols=37 Identities=11% Similarity=0.083 Sum_probs=25.8
Q ss_pred CCCceEEeecccCCCCCCCCChHHHHHHHhcCCCCcEEEccCCcC
Q 028616 40 KLLVVLCRNMHPLDTADKLSQDDEANAIASTMPKLKRLEMAYHVI 84 (206)
Q Consensus 40 ~~L~~L~L~~~~~~~~g~~v~d~~~~~ia~~~p~Lk~L~L~~~~i 84 (206)
++|+.|.|+.+.+.. +... +...+++|+.|.|++|.+
T Consensus 31 ~~l~~L~Ls~N~l~~----l~~~----~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 31 VDTTELVLTGNNLTA----LPPG----LLDALPALRTAHLGANPW 67 (130)
T ss_dssp TTCSEEECTTSCCSS----CCTT----TGGGCTTCCEEECCSSCC
T ss_pred cCCCEEECCCCcCCc----cChh----hhhhccccCEEEecCCCe
Confidence 479999998776532 2211 234778999999999874
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=30.60 E-value=6.9 Score=26.95 Aligned_cols=33 Identities=21% Similarity=0.379 Sum_probs=19.1
Q ss_pred cCCCCcEEEccCCc--CCHHHHHHHHhCCCCccEEeeeC
Q 028616 70 TMPKLKRLEMAYHV--ISTEIVLKILSSCALLEFLDLRG 106 (206)
Q Consensus 70 ~~p~Lk~L~L~~~~--it~~~l~~il~~c~~Le~LdL~~ 106 (206)
+|.+|+++.|..+- |.+.++ .+|.+|+.+.+.+
T Consensus 18 ~c~~L~~i~iP~~v~~Ig~~aF----~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 18 GNTVIREITVQPNIGLLYDGMF----SGCTALEKLILTG 52 (100)
T ss_dssp TCTTCCCEEECTTSSCCCTTSS----TTCTTCCCEEECC
T ss_pred CCCCCcEEEcCCchheEcHHHH----hccCCccEEEEcC
Confidence 56666666665542 444433 3667777666654
No 166
>4fp9_B Mterf domain-containing protein 2; modification enzyme, transferase; HET: SAM; 2.90A {Homo sapiens}
Probab=30.12 E-value=11 Score=31.94 Aligned_cols=20 Identities=30% Similarity=0.370 Sum_probs=13.2
Q ss_pred cCCHHHHHHHHhCCCCccEE
Q 028616 83 VISTEIVLKILSSCALLEFL 102 (206)
Q Consensus 83 ~it~~~l~~il~~c~~Le~L 102 (206)
.++...+..++..||++=.+
T Consensus 160 GfS~~ev~~mv~r~P~lL~~ 179 (335)
T 4fp9_B 160 LFTVQQVTKILHSCPSVLRE 179 (335)
T ss_dssp CCCHHHHHHHHHHCGGGGTS
T ss_pred CCCHHHHHHHHHhCChhhhC
Confidence 46777777777777765444
No 167
>2oj5_A Viral attachment protein sigma 1; beta-barrel, beta-spiral repeat, aspartic acid cluster, GREE motif, trimer, viral protein; 1.75A {Reovirus SP} PDB: 3eoy_A 2oj6_A
Probab=22.50 E-value=22 Score=26.37 Aligned_cols=27 Identities=30% Similarity=0.512 Sum_probs=21.0
Q ss_pred ccccCcCccccceeeeecccccccccCCCCC
Q 028616 174 GMWDDEGRLEELELRFYDGIEEDAGIYGWPP 204 (206)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (206)
++|.|+ +||+|-|+|-.--+..-+|||
T Consensus 129 ~eW~dG----~Lei~n~GGty~~Ht~v~Wap 155 (165)
T 2oj5_A 129 EQWQDG----VLRLRVEGGGSITHSNSKWPA 155 (165)
T ss_dssp EEEETT----EEEEEEECSCCCCCSEEEECC
T ss_pred hhhhCc----eEEEEEcCCceeeccccccCc
Confidence 467776 799999999655566778987
Done!