Query 028617
Match_columns 206
No_of_seqs 153 out of 1044
Neff 3.9
Searched_HMMs 46136
Date Fri Mar 29 14:19:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028617.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028617hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00256 D-tyrosyl-tRNA(Tyr) 100.0 1.6E-58 3.4E-63 378.3 15.3 134 37-174 1-138 (145)
2 PRK05273 D-tyrosyl-tRNA(Tyr) d 100.0 2.9E-58 6.3E-63 377.5 15.1 134 37-174 1-138 (147)
3 PTZ00120 D-tyrosyl-tRNA(Tyr) d 100.0 4.5E-58 9.7E-63 378.8 15.3 137 37-175 1-141 (154)
4 COG1490 Dtd D-Tyr-tRNAtyr deac 100.0 2.4E-58 5.3E-63 375.6 13.1 134 37-174 1-138 (145)
5 cd00563 Dtyr_deacylase D-Tyros 100.0 7.4E-58 1.6E-62 374.3 15.1 134 37-174 1-138 (145)
6 PF02580 Tyr_Deacylase: D-Tyr- 100.0 5.9E-56 1.3E-60 362.6 13.1 134 38-174 1-138 (145)
7 KOG3323 D-Tyr-tRNA (Tyr) deacy 100.0 2.4E-55 5.2E-60 358.2 8.7 138 37-175 1-141 (149)
8 PRK15245 type III effector pho 65.5 4.5 9.8E-05 36.3 2.1 98 75-180 111-214 (241)
9 PF03536 VRP3: Salmonella viru 42.1 9.4 0.0002 34.4 0.3 100 75-180 110-213 (240)
10 PF14836 Ubiquitin_3: Ubiquiti 33.8 66 0.0014 24.9 3.8 51 64-120 15-65 (88)
11 COG4281 ACB Acyl-CoA-binding p 33.3 50 0.0011 25.6 3.0 35 121-155 38-86 (87)
12 PF08915 tRNA-Thr_ED: Archaea- 29.0 44 0.00096 27.9 2.2 85 56-164 31-119 (138)
13 cd08049 TAF8 TATA Binding Prot 28.7 29 0.00063 23.9 1.0 11 2-12 2-12 (54)
14 cd00435 ACBP Acyl CoA binding 27.8 61 0.0013 24.3 2.6 34 121-154 37-84 (85)
15 PF10406 TAF8_C: Transcription 25.8 35 0.00076 23.5 0.9 11 2-12 2-12 (51)
16 PF01076 Mob_Pre: Plasmid reco 25.7 46 0.001 28.1 1.8 34 126-159 87-120 (196)
17 PF02184 HAT: HAT (Half-A-TPR) 23.6 47 0.001 21.4 1.1 13 136-148 3-15 (32)
18 PF06983 3-dmu-9_3-mt: 3-demet 22.6 3.3E+02 0.0071 21.1 6.0 41 43-86 45-93 (116)
19 PF11141 DUF2914: Protein of u 22.0 57 0.0012 23.4 1.4 33 85-119 33-65 (66)
20 PF00887 ACBP: Acyl CoA bindin 21.2 41 0.00088 24.7 0.6 33 121-153 39-85 (87)
No 1
>TIGR00256 D-tyrosyl-tRNA(Tyr) deacylase. This homodimeric enzyme appears able to cleave any D-amino acid (and glycine, which does not have distinct D/L forms) from charged tRNA. The name reflects characterization with respect to D-Tyr on tRNA(Tyr) as established in the literature, but substrate specificity seems much broader.
Probab=100.00 E-value=1.6e-58 Score=378.32 Aligned_cols=134 Identities=40% Similarity=0.576 Sum_probs=129.0
Q ss_pred ceEEEEeeceeEEEECCEEEEEECCeeEEEEEeecCCCHHHHHHHHHHHhccccccCCCCCCcccccccccCCcEEEecc
Q 028617 37 MRAVVQRVASASVEVEGRLVSEIGPGLLVLVGLHEFDTDADADYVCRKVLNMRLFPNENTGKGWDLNVMQKKYGVLLVSQ 116 (206)
Q Consensus 37 MR~VIQRV~~AsV~Vdg~~vg~Ig~GLlvLVGi~~~Dteed~~~ma~KIlnLRIFeDe~gGKkmn~SV~Dv~GeILvVSQ 116 (206)
||+|||||++|+|+|||+++++||+|+|+||||+++||+++++|||+||+|||||+||+ || ||+||+|++||||+|||
T Consensus 1 Mr~viQRV~~AsV~V~~~~v~~I~~GllvlvGi~~~Dt~~~~~~~~~Kil~lRif~de~-gk-~~~Sv~d~~geiL~VSQ 78 (145)
T TIGR00256 1 MIALIQRVSQASVTVEGEVIGEIGAGLLVLLGVEKDDDEQKADKLAEKVLNYRIFSDSE-GK-MNLNVQQAGGEILSVSQ 78 (145)
T ss_pred CEEEEEEeCeEEEEECCEEEEEECCcEEEEEEecCCCCHHHHHHHHHHHhheEeccCCC-CC-ccCCHHHCCCCEEEEEC
Confidence 99999999999999999999999999999999999999999999999999999999998 65 99999999999999999
Q ss_pred ccccccC-cCCCCCCCCCCCCCchHHHHHHHHHHHHhhCCCCccccccc---eeEEEEeccc
Q 028617 117 FTLYGIL-KGNKPDFHVAMPPQKAKPFYDSLVDKFRKSYNPDAIKGKCA---FQLHLVLRSF 174 (206)
Q Consensus 117 FTL~a~~-KGnRPsF~~Aa~pe~A~~LY~~Fv~~lr~~~~~~~V~~G~F---~qv~lv~~~~ 174 (206)
|||||++ ||||||||.||+||+|++||++|+++|++.+ .+|++|+| |+++++||+-
T Consensus 79 FTL~a~~~KG~rPsF~~a~~~~~A~~ly~~fv~~l~~~~--~~V~~G~FGa~M~V~l~NdGP 138 (145)
T TIGR00256 79 FTLAADTKKGMRPSFSKGASPDRAEELYEYFVELCREKG--MKVQTGRFAADMQVSLTNDGP 138 (145)
T ss_pred CcccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHhcC--CCceECccCCCcEEEEEECCC
Confidence 9999996 9999999999999999999999999999764 58999988 9999999974
No 2
>PRK05273 D-tyrosyl-tRNA(Tyr) deacylase; Provisional
Probab=100.00 E-value=2.9e-58 Score=377.50 Aligned_cols=134 Identities=47% Similarity=0.744 Sum_probs=129.3
Q ss_pred ceEEEEeeceeEEEECCEEEEEECCeeEEEEEeecCCCHHHHHHHHHHHhccccccCCCCCCcccccccccCCcEEEecc
Q 028617 37 MRAVVQRVASASVEVEGRLVSEIGPGLLVLVGLHEFDTDADADYVCRKVLNMRLFPNENTGKGWDLNVMQKKYGVLLVSQ 116 (206)
Q Consensus 37 MR~VIQRV~~AsV~Vdg~~vg~Ig~GLlvLVGi~~~Dteed~~~ma~KIlnLRIFeDe~gGKkmn~SV~Dv~GeILvVSQ 116 (206)
||+|||||++|+|+|||+++++||+|+|+||||+++||+++++|||+||++||||+|++ || ||+||+|++||||+|||
T Consensus 1 Mr~viQRV~~AsV~Vd~~~v~~Ig~GllvlvGi~~~Dt~~~~~~~~~Kil~lRif~d~~-gk-~~~Sv~d~~geiL~VsQ 78 (147)
T PRK05273 1 MRAVIQRVSEASVTVDGEVVGEIGKGLLVLVGVEKGDTEEDADYLAEKILNLRIFEDEE-GK-MNLSVQDVGGEILVVSQ 78 (147)
T ss_pred CEEEEEEeceEEEEECCEEEEEECCceEEEEEEcCCCCHHHHHHHHHHHhheEcccCCC-CC-cccCHHHCCCCEEEEEc
Confidence 99999999999999999999999999999999999999999999999999999999999 75 99999999999999999
Q ss_pred ccccccC-cCCCCCCCCCCCCCchHHHHHHHHHHHHhhCCCCccccccc---eeEEEEeccc
Q 028617 117 FTLYGIL-KGNKPDFHVAMPPQKAKPFYDSLVDKFRKSYNPDAIKGKCA---FQLHLVLRSF 174 (206)
Q Consensus 117 FTL~a~~-KGnRPsF~~Aa~pe~A~~LY~~Fv~~lr~~~~~~~V~~G~F---~qv~lv~~~~ 174 (206)
|||||++ ||||||||.||+|++|++||++|+++|++.+ .+|++|+| |+++++||+-
T Consensus 79 FTL~a~~~KG~rP~F~~a~~~~~A~~ly~~f~~~l~~~~--~~V~~G~FGa~M~V~l~NDGP 138 (147)
T PRK05273 79 FTLYADTRKGRRPSFSAAAPPEEAEPLYDYFVEALRAQG--VPVETGRFGADMQVSLVNDGP 138 (147)
T ss_pred ccccccCCCCCCCCccccCCHHHHHHHHHHHHHHHHHcC--CceeecccCCCcEEEEEECCC
Confidence 9999996 9999999999999999999999999999886 47988888 9999999984
No 3
>PTZ00120 D-tyrosyl-tRNA(Tyr) deacylase; Provisional
Probab=100.00 E-value=4.5e-58 Score=378.80 Aligned_cols=137 Identities=55% Similarity=0.880 Sum_probs=131.0
Q ss_pred ceEEEEeeceeEEEECCEEEEEECCeeEEEEEeecCCCHHHHHHHHHHHhccccccCCCCCCcccccccccCCcEEEecc
Q 028617 37 MRAVVQRVASASVEVEGRLVSEIGPGLLVLVGLHEFDTDADADYVCRKVLNMRLFPNENTGKGWDLNVMQKKYGVLLVSQ 116 (206)
Q Consensus 37 MR~VIQRV~~AsV~Vdg~~vg~Ig~GLlvLVGi~~~Dteed~~~ma~KIlnLRIFeDe~gGKkmn~SV~Dv~GeILvVSQ 116 (206)
||+|||||++|+|+|||+++++||+|+|+||||+++||+++++|||+||++||||+||+ ||+||+||+|++||||+|||
T Consensus 1 Mr~viQRV~~AsV~V~~~~v~~I~~GllvlvGi~~~Dt~~~~~~l~~Kil~lRiF~de~-gk~~n~Sv~d~~geiL~VSQ 79 (154)
T PTZ00120 1 MRVVIQRVLSASVTVEGEVVGSIGKGLVLLVGIHEEDTWEDADYIIRKCLKLRLWPDEG-GKMWDRSVKDKDYEVLVVSQ 79 (154)
T ss_pred CEEEEEEeCeEEEEECCEEEEEECCceEEEEEEcCCCCHHHHHHHHHHHhheecccCCC-CCcccCCHhhcCCCEEEEEc
Confidence 99999999999999999999999999999999999999999999999999999999998 77689999999999999999
Q ss_pred cccccc-CcCCCCCCCCCCCCCchHHHHHHHHHHHHhhCCCCccccccc---eeEEEEecccc
Q 028617 117 FTLYGI-LKGNKPDFHVAMPPQKAKPFYDSLVDKFRKSYNPDAIKGKCA---FQLHLVLRSFS 175 (206)
Q Consensus 117 FTL~a~-~KGnRPsF~~Aa~pe~A~~LY~~Fv~~lr~~~~~~~V~~G~F---~qv~lv~~~~~ 175 (206)
|||| + .||||||||.||+||+|++||++|+++|++.+.+.+|++|+| |+++|+||+-=
T Consensus 80 FTL~-~~~KG~RPsF~~aa~~~~A~~Ly~~f~~~l~~~~~~~~V~~G~FGa~M~V~l~NdGPv 141 (154)
T PTZ00120 80 FTLF-NVKKGNKPDFHLAMSPEDALPLYNKFVEKFKKEYAPEKIKTGKFGQYMNVSLVNDGPV 141 (154)
T ss_pred cccc-cCCCCCCCCccccCCHHHHHHHHHHHHHHHHhcCCCCccEECcCCCCcEEEEEECCCE
Confidence 9999 7 599999999999999999999999999999875458999998 99999999853
No 4
>COG1490 Dtd D-Tyr-tRNAtyr deacylase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.4e-58 Score=375.59 Aligned_cols=134 Identities=44% Similarity=0.673 Sum_probs=129.2
Q ss_pred ceEEEEeeceeEEEECCEEEEEECCeeEEEEEeecCCCHHHHHHHHHHHhccccccCCCCCCcccccccccCCcEEEecc
Q 028617 37 MRAVVQRVASASVEVEGRLVSEIGPGLLVLVGLHEFDTDADADYVCRKVLNMRLFPNENTGKGWDLNVMQKKYGVLLVSQ 116 (206)
Q Consensus 37 MR~VIQRV~~AsV~Vdg~~vg~Ig~GLlvLVGi~~~Dteed~~~ma~KIlnLRIFeDe~gGKkmn~SV~Dv~GeILvVSQ 116 (206)
||+|||||++|+|+|||+++|+|++|||+|||++++||+++++||++||+|||||+|++ || ||+||+|++|+||+|||
T Consensus 1 MkaviQRV~~AsV~Vdgeivg~I~~GllvLvGV~~~Dt~~~a~~l~~Ki~~lRiF~D~~-gK-mN~sv~di~G~iL~VSQ 78 (145)
T COG1490 1 MKAVIQRVSSASVSVDGEVVGAIGQGLLVLVGVTHDDTEEDADYLAEKILNLRIFEDEE-GK-MNLSVQDVGGEILVVSQ 78 (145)
T ss_pred CeeeeeeeeeeEEEECCEEeeecCCcEEEEEeecCCCCHHHHHHHHHHHhceEeecCcc-cc-cccCHHHcCCcEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999998 65 99999999999999999
Q ss_pred ccccccC-cCCCCCCCCCCCCCchHHHHHHHHHHHHhhCCCCccccccc---eeEEEEeccc
Q 028617 117 FTLYGIL-KGNKPDFHVAMPPQKAKPFYDSLVDKFRKSYNPDAIKGKCA---FQLHLVLRSF 174 (206)
Q Consensus 117 FTL~a~~-KGnRPsF~~Aa~pe~A~~LY~~Fv~~lr~~~~~~~V~~G~F---~qv~lv~~~~ 174 (206)
||||||+ ||+||||+.||+|++|++||++|++.|++.+ .+|++|+| |+|+|+||+-
T Consensus 79 FTL~adt~kG~RPsFs~aa~p~~A~~lYe~f~~~lr~~~--~~V~tG~FgA~M~V~LvNdGP 138 (145)
T COG1490 79 FTLYADTKKGRRPSFSKAAKPDQAEELYEYFVELLRELG--IKVETGRFGADMQVSLVNDGP 138 (145)
T ss_pred EEEeecccCCCCCCccccCChHHHHHHHHHHHHHHHhcC--CcceeeeeeceeEEEEecCCC
Confidence 9999995 9999999999999999999999999999875 57888888 9999999984
No 5
>cd00563 Dtyr_deacylase D-Tyrosyl-tRNAtyr deacylases; a class of tRNA-dependent hydrolases which are capable of hydrolyzing the ester bond of D-Tyrosyl-tRNA reducing the level of cellular D-Tyrosine while recycling the peptidyl-tRNA; found in bacteria and in eukaryotes but not in archea; beta barrel-like fold structure; forms homodimers in which two surface cavities serve as the active site for tRNA binding
Probab=100.00 E-value=7.4e-58 Score=374.32 Aligned_cols=134 Identities=47% Similarity=0.752 Sum_probs=129.2
Q ss_pred ceEEEEeeceeEEEECCEEEEEECCeeEEEEEeecCCCHHHHHHHHHHHhccccccCCCCCCcccccccccCCcEEEecc
Q 028617 37 MRAVVQRVASASVEVEGRLVSEIGPGLLVLVGLHEFDTDADADYVCRKVLNMRLFPNENTGKGWDLNVMQKKYGVLLVSQ 116 (206)
Q Consensus 37 MR~VIQRV~~AsV~Vdg~~vg~Ig~GLlvLVGi~~~Dteed~~~ma~KIlnLRIFeDe~gGKkmn~SV~Dv~GeILvVSQ 116 (206)
||+|||||++|+|+|||+++++||+|+|+||||+++||+++++||++||+|||||+||+ || ||+||+|++||||+|||
T Consensus 1 Mr~viQRV~~A~V~V~~~~v~~Ig~GllvlvGi~~~Dt~~~~~~~~~Kll~lRif~d~~-gk-~~~Sv~d~~gevL~VsQ 78 (145)
T cd00563 1 MRAVIQRVSEASVTVDGEVVGAIGQGLLVLVGVTHDDTEEDAEYLARKILNLRIFEDEE-GK-MNLSVKDVNGEILVVSQ 78 (145)
T ss_pred CEEEEEEeceEEEEECCEEEEEECCcEEEEEEecCCCCHHHHHHHHHHHhheEcccCCC-CC-cccChhhcCCCEEEEEc
Confidence 99999999999999999999999999999999999999999999999999999999998 75 99999999999999999
Q ss_pred ccccccC-cCCCCCCCCCCCCCchHHHHHHHHHHHHhhCCCCccccccc---eeEEEEeccc
Q 028617 117 FTLYGIL-KGNKPDFHVAMPPQKAKPFYDSLVDKFRKSYNPDAIKGKCA---FQLHLVLRSF 174 (206)
Q Consensus 117 FTL~a~~-KGnRPsF~~Aa~pe~A~~LY~~Fv~~lr~~~~~~~V~~G~F---~qv~lv~~~~ 174 (206)
|||||++ ||||||||.||+||+|++||++|+++|++.+ .+|++|+| |+++++||+-
T Consensus 79 FTL~~~~~KG~rP~F~~a~~~e~A~~ly~~fv~~l~~~~--~~V~~G~FGa~M~V~l~NDGP 138 (145)
T cd00563 79 FTLYADTKKGRRPSFSAAAPPDKAEPLYESFVELLREKG--IKVETGVFGAMMQVSLVNDGP 138 (145)
T ss_pred cccccccCCCCCCCccccCCHHHHHHHHHHHHHHHHHcC--CcceeCccCCCcEEEEEECCC
Confidence 9999996 9999999999999999999999999999886 47988888 9999999974
No 6
>PF02580 Tyr_Deacylase: D-Tyr-tRNA(Tyr) deacylase; InterPro: IPR003732 This homodimeric enzyme appears able to cleave any D-amino acid (and glycine, which does not have distinct D/L forms) from charged tRNA. The name reflects characterisation with respect to D-Tyr on tRNA(Tyr) as established in the literature, but substrate specificity seems much broader. ; GO: 0016788 hydrolase activity, acting on ester bonds, 0019478 D-amino acid catabolic process, 0005737 cytoplasm; PDB: 3LMU_F 3LMT_B 3KNF_B 3KOC_C 3KNP_D 3KO9_F 3KO3_B 3KO5_C 3KOB_D 3LMV_E ....
Probab=100.00 E-value=5.9e-56 Score=362.64 Aligned_cols=134 Identities=51% Similarity=0.826 Sum_probs=121.3
Q ss_pred eEEEEeeceeEEEECCEEEEEECCeeEEEEEeecCCCHHHHHHHHHHHhccccccCCCCCCcccccccccCCcEEEeccc
Q 028617 38 RAVVQRVASASVEVEGRLVSEIGPGLLVLVGLHEFDTDADADYVCRKVLNMRLFPNENTGKGWDLNVMQKKYGVLLVSQF 117 (206)
Q Consensus 38 R~VIQRV~~AsV~Vdg~~vg~Ig~GLlvLVGi~~~Dteed~~~ma~KIlnLRIFeDe~gGKkmn~SV~Dv~GeILvVSQF 117 (206)
|+|||||++|+|+|||+++++||+|+|+||||+++||+++++|||+||+|+|||+|++ || ||+||+|++||||+||||
T Consensus 1 R~ViQRV~~A~V~V~~~~~~~Ig~Glvvlvgi~~~Dt~~~~~~~~~Kil~lRif~d~~-gk-~~~Sv~d~~geiL~VsQF 78 (145)
T PF02580_consen 1 RAVIQRVSSASVTVDGEVVSSIGRGLVVLVGIGKGDTEEDVDKMARKILNLRIFEDEN-GK-WNLSVKDVGGEILLVSQF 78 (145)
T ss_dssp EEEEEEEEEEEEEETTEEEEEESSEEEEEEEEBTT--HHHHHHHHHHHHHSEEEEETT-SS-EEEETTTTT-EEEEEE-G
T ss_pred CEEEEEeCeEEEEECCEEEEEECCCcEEEEEEECCCCHHHHHHHHHhhceEEECcCcC-Cc-cceeHhhcccceEEEEee
Confidence 7999999999999999999999999999999999999999999999999999999998 65 999999999999999999
Q ss_pred cccccC-cCCCCCCCCCCCCCchHHHHHHHHHHHHhhCCCCccccccc---eeEEEEeccc
Q 028617 118 TLYGIL-KGNKPDFHVAMPPQKAKPFYDSLVDKFRKSYNPDAIKGKCA---FQLHLVLRSF 174 (206)
Q Consensus 118 TL~a~~-KGnRPsF~~Aa~pe~A~~LY~~Fv~~lr~~~~~~~V~~G~F---~qv~lv~~~~ 174 (206)
||||++ ||||||||.||+|++|++||++|+++|++.++ .+|++|+| |+++++||+-
T Consensus 79 TL~g~~~kG~rp~f~~a~~~~~a~~ly~~f~~~l~~~~~-~~V~~G~FGa~M~V~l~NdGP 138 (145)
T PF02580_consen 79 TLYGDTKKGNRPSFHNAAPPEEAEELYERFVEKLREEYK-PKVKTGVFGADMQVSLVNDGP 138 (145)
T ss_dssp GGGSBCSSSSSEBGTTB--HHHHHHHHHHHHHHHHHHST-SCEEE--TTS-EEEEEEEEEE
T ss_pred eeeeeccCCCCccccccCCHHHHHHHHHHHHHHHHHhCC-CceeECccCCeeEEEEEeCCC
Confidence 999996 99999999999999999999999999999985 48999988 9999999873
No 7
>KOG3323 consensus D-Tyr-tRNA (Tyr) deacylase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.4e-55 Score=358.21 Aligned_cols=138 Identities=51% Similarity=0.788 Sum_probs=134.3
Q ss_pred ceEEEEeeceeEEEECCEEEEEECCeeEEEEEeecCCCHHHHHHHHHHHhccccccCCCCCCcccccccccCCcEEEecc
Q 028617 37 MRAVVQRVASASVEVEGRLVSEIGPGLLVLVGLHEFDTDADADYVCRKVLNMRLFPNENTGKGWDLNVMQKKYGVLLVSQ 116 (206)
Q Consensus 37 MR~VIQRV~~AsV~Vdg~~vg~Ig~GLlvLVGi~~~Dteed~~~ma~KIlnLRIFeDe~gGKkmn~SV~Dv~GeILvVSQ 116 (206)
||+|||||++|+|+|+++.|++||+|+|+||||+++||++|+++|++||||+|+||||. ||.|.+||+|.+||||||||
T Consensus 1 mkavlQrv~~AsvtV~~~~vs~I~~Gl~vlvgi~~~dt~ed~~kmvrkiLnlrlfe~es-~k~w~ksv~dl~~eiL~VsQ 79 (149)
T KOG3323|consen 1 MKAVLQRVLRASVTVDDEQVSEIGRGLCVLVGISKDDTEEDLEKMVRKILNLRLFEDES-GKGWKKSVMDLNGEILCVSQ 79 (149)
T ss_pred ChHHHHHhhhheEEEcceeeeeecCceEEEEEEccCCCHHHHHHHHHHHhheeeccccc-cCcccchhhhCCCCEEEEEe
Confidence 89999999999999999999999999999999999999999999999999999999997 68899999999999999999
Q ss_pred ccccccCcCCCCCCCCCCCCCchHHHHHHHHHHHHhhCCCCccccccc---eeEEEEecccc
Q 028617 117 FTLYGILKGNKPDFHVAMPPQKAKPFYDSLVDKFRKSYNPDAIKGKCA---FQLHLVLRSFS 175 (206)
Q Consensus 117 FTL~a~~KGnRPsF~~Aa~pe~A~~LY~~Fv~~lr~~~~~~~V~~G~F---~qv~lv~~~~~ 175 (206)
|||||.+|||+||||.||++++|.+||++|++.|++.|++++|++|.| |+++++||+--
T Consensus 80 fTL~~rlKG~kpdfH~am~~~ea~elY~qfl~~l~k~~~~~~ikdG~fGamm~v~l~n~GPv 141 (149)
T KOG3323|consen 80 FTLYGRLKGNKPDFHLAMKGEEAKELYNQFLELLRKAYGADKIKDGKFGAMMQVHLVNDGPV 141 (149)
T ss_pred eeeeeeecCCCcchhhhcCchhhHHHHHHHHHHHHHHhCchhhhccccceEEEEEEecCCCe
Confidence 999999999999999999999999999999999999999999999988 99999999853
No 8
>PRK15245 type III effector phosphothreonine lyase; Provisional
Probab=65.47 E-value=4.5 Score=36.33 Aligned_cols=98 Identities=11% Similarity=0.155 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHhccccccCCCCCCcccccccccC-----CcEEEeccccccccCcCCCCCCCCCCCCCchHHHHHHHHHH
Q 028617 75 DADADYVCRKVLNMRLFPNENTGKGWDLNVMQKK-----YGVLLVSQFTLYGILKGNKPDFHVAMPPQKAKPFYDSLVDK 149 (206)
Q Consensus 75 eed~~~ma~KIlnLRIFeDe~gGKkmn~SV~Dv~-----GeILvVSQFTL~a~~KGnRPsF~~Aa~pe~A~~LY~~Fv~~ 149 (206)
.+.+...-+-|..|=.-+|..=+ ||..+ |++ -.|=+=-|||||.+. +=-++-=......-...|++.
T Consensus 111 ~~qv~qAF~als~lLfSeDSPiD-KWKVT--DM~rv~qqsRV~~GAQfTLYvKp-----d~edsqYsa~~l~k~r~Fie~ 182 (241)
T PRK15245 111 RDQVPQAFQALSGLLFSEDSPVD-KWKVT--DMERVSQQSRVGLGAQFTLYVKP-----DQENSQYSASFLHKTRQFIEC 182 (241)
T ss_pred HHHHHHHHHHhhhhhcCCCCCcc-eeeec--cccccCccchhcccceEEEEecC-----ccccccCCHHHHHHHHHHHHH
Confidence 35555555556666444444323 46533 332 234444599999652 222221112223334789999
Q ss_pred HHhhCCCCccccccceeEEEEeccccee-eeh
Q 028617 150 FRKSYNPDAIKGKCAFQLHLVLRSFSFL-YKS 180 (206)
Q Consensus 150 lr~~~~~~~V~~G~F~qv~lv~~~~~~~-~~~ 180 (206)
+.......-|+.|..=+-++-.+...|+ |..
T Consensus 183 lE~~L~~~gi~pG~~P~SDV~pe~W~y~SYRN 214 (241)
T PRK15245 183 LESRLSENGVISGQCPESDVHPENWKYLSYRN 214 (241)
T ss_pred HHHHHHHcCCCCCCCCccccCccccceeeehh
Confidence 9887765668999998888888988888 754
No 9
>PF03536 VRP3: Salmonella virulence-associated 28kDa protein; InterPro: IPR003519 Salmonella typhimurium contains a 90kb plasmid that is associated with virulence. This plasmid encodes at least 6 genes needed by the bacterium for invading host macrophages during infection. These include the 70kDa mkaA protein [], a recognised virulence factor. Deletion studies into the virulence plasmid have shown that an open reading frame encoding a 28kDa protein was needed for successful invasion of the host. This protein, designated mkfA [], VRP4 [] or VirA [] by different groups, is utilised by the microbe upon entry into macrophages, although the exact mechanism is unclear.; PDB: 2Z8P_A 2Z8O_B 2Z8M_B 2Z8N_A 2P1W_A 2Q8Y_A 3I0U_B 3BO6_B.
Probab=42.07 E-value=9.4 Score=34.37 Aligned_cols=100 Identities=10% Similarity=0.207 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHhccccccCCCCCCccccc---ccccCCcEEEeccccccccCcCCCCCCCCCCCCCchHHHHHHHHHHHH
Q 028617 75 DADADYVCRKVLNMRLFPNENTGKGWDLN---VMQKKYGVLLVSQFTLYGILKGNKPDFHVAMPPQKAKPFYDSLVDKFR 151 (206)
Q Consensus 75 eed~~~ma~KIlnLRIFeDe~gGKkmn~S---V~Dv~GeILvVSQFTL~a~~KGnRPsF~~Aa~pe~A~~LY~~Fv~~lr 151 (206)
.+++...-+-|.+|=.-+|..-+ ||..+ -.+-.-.|=+=-|||||.+..-.--+| +|+..+. ...|++.+.
T Consensus 110 ~~~v~~aF~ai~~lL~s~DSPvD-KWKvTDm~rv~~~sRV~~GAQfTLY~kpd~eds~Y----s~~~l~k-~r~fi~~iE 183 (240)
T PF03536_consen 110 PEQVPQAFQAISGLLFSEDSPVD-KWKVTDMSRVDQQSRVTQGAQFTLYVKPDREDSQY----SAEYLHK-TRQFIESIE 183 (240)
T ss_dssp GGGHHHHHHHHHHHHT-TT-S-S-EEEEE-TTTCCTTSCCCSS-SEEEEEE-SSTTS-------HHHHHH-HHHHHHHHH
T ss_pred HHHhHHHHHHHHHHhhcCCCcch-hhhcchhhhcchhhheeccceEEEEecCccccccC----CHHHHHH-HHHHHHHHH
Confidence 35555555555665333443323 47543 122233444455999998642221222 2333333 367888887
Q ss_pred hhCCCCccccccceeEEEEeccccee-eeh
Q 028617 152 KSYNPDAIKGKCAFQLHLVLRSFSFL-YKS 180 (206)
Q Consensus 152 ~~~~~~~V~~G~F~qv~lv~~~~~~~-~~~ 180 (206)
.+....-|..|..=+-+.-++..+|+ |..
T Consensus 184 ~~L~~agi~pg~~P~SDV~p~~W~yaSYRN 213 (240)
T PF03536_consen 184 SELSEAGIQPGERPESDVSPEHWSYASYRN 213 (240)
T ss_dssp HHHHHTT--B----TT-B--TT-SSEEEEE
T ss_pred HHHHHcCCCCCCCCccccCccccceeeehh
Confidence 76544457788877778888888888 753
No 10
>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A.
Probab=33.76 E-value=66 Score=24.87 Aligned_cols=51 Identities=20% Similarity=0.297 Sum_probs=34.9
Q ss_pred EEEEEeecCCCHHHHHHHHHHHhccccccCCCCCCcccccccccCCcEEEecccccc
Q 028617 64 LVLVGLHEFDTDADADYVCRKVLNMRLFPNENTGKGWDLNVMQKKYGVLLVSQFTLY 120 (206)
Q Consensus 64 lvLVGi~~~Dteed~~~ma~KIlnLRIFeDe~gGKkmn~SV~Dv~GeILvVSQFTL~ 120 (206)
++-..|.+.||-+.++.-++|++++ +.|. +-|+++ .+-+.|.|.=+.-||-
T Consensus 15 ~~t~~FSk~DTI~~v~~~~rklf~i---~~E~--RLW~~~-~~~~~e~L~~~~~Tv~ 65 (88)
T PF14836_consen 15 VLTKQFSKTDTIGFVEKEMRKLFNI---QEET--RLWNKY-SENSYELLNNPEITVE 65 (88)
T ss_dssp EEEEEE-TTSBHHHHHHHHHHHCT----TS-E--EEEEEC-TTTCEEEE--TTSBTT
T ss_pred HhHhhccccChHHHHHHHHHHHhCC---Cccc--eehhcc-CCcchhhhCCCCccHH
Confidence 6778899999999999999999998 5543 457766 3446677766666653
No 11
>COG4281 ACB Acyl-CoA-binding protein [Lipid metabolism]
Probab=33.30 E-value=50 Score=25.62 Aligned_cols=35 Identities=29% Similarity=0.505 Sum_probs=26.9
Q ss_pred ccCcCCCCCCCCC--------------CCCCchHHHHHHHHHHHHhhCC
Q 028617 121 GILKGNKPDFHVA--------------MPPQKAKPFYDSLVDKFRKSYN 155 (206)
Q Consensus 121 a~~KGnRPsF~~A--------------a~pe~A~~LY~~Fv~~lr~~~~ 155 (206)
||..|.||.|.+- -+.|.|++=|-.||++|+..|+
T Consensus 38 GD~~~ekPG~~d~~gr~K~eAW~~LKGksqedA~qeYialVeeLkak~~ 86 (87)
T COG4281 38 GDNDGEKPGFFDIVGRYKYEAWAGLKGKSQEDARQEYIALVEELKAKYG 86 (87)
T ss_pred cccCCCCCCccccccchhHHHHhhccCccHHHHHHHHHHHHHHHHhhcC
Confidence 4566777777643 3568999999999999998763
No 12
>PF08915 tRNA-Thr_ED: Archaea-specific editing domain of threonyl-tRNA synthetase; InterPro: IPR015011 Archaea-specific editing domain of threonyl-tRNA synthetase, with marked structural similarity to D-amino acids deacylases found in eubacteria and eukaryotes. This domain can bind D-amino acids, and ensures high fidelity during translation. It is especially responsible for removing incorrectly attached serine from tRNA-Thr. The domain forms a fold that can be defined as two layers of beta-sheets (a three-stranded sheet and a five-stranded sheet), with two alpha-helices located adjacent to the five-stranded sheet []. ; GO: 0004829 threonine-tRNA ligase activity, 0005524 ATP binding, 0008270 zinc ion binding, 0005737 cytoplasm; PDB: 3PD4_B 3PD3_A 2HL0_A 2HL1_A 2HKZ_A 3PD5_B 2HL2_A 3PD2_B 1Y2Q_A.
Probab=29.00 E-value=44 Score=27.88 Aligned_cols=85 Identities=11% Similarity=0.069 Sum_probs=51.9
Q ss_pred EEEECCeeEEEEEeecCCCHH---HHHHHHHHHhccccccCCCCCCcccccccccCCcEEEeccccccccCcCCCCCCCC
Q 028617 56 VSEIGPGLLVLVGLHEFDTDA---DADYVCRKVLNMRLFPNENTGKGWDLNVMQKKYGVLLVSQFTLYGILKGNKPDFHV 132 (206)
Q Consensus 56 vg~Ig~GLlvLVGi~~~Dtee---d~~~ma~KIlnLRIFeDe~gGKkmn~SV~Dv~GeILvVSQFTL~a~~KGnRPsF~~ 132 (206)
-+....-+|+|+.++++|+++ .+++.++-|..+ + +| .+.+ .|++=|=.-|..+
T Consensus 31 ~~~~e~alVvF~~VE~~De~~~~~vv~~av~eI~~~--a-----~k-v~~~------~ivlyPyAHLSs~---------- 86 (138)
T PF08915_consen 31 EGRMENALVVFIAVEKGDEENPEGVVEKAVEEIKWV--A-----KK-VKAK------RIVLYPYAHLSSS---------- 86 (138)
T ss_dssp EEEEEEEEEEEEE-BGGGGG-HHHHHHHHHHHHHHH--H-----HH-TT-S------EEEEEE-GGGSSS----------
T ss_pred ccceeeeEEEEEEEcCCCCCCHHHHHHHHHHHHHHH--H-----Hh-cCCC------EEEEeCcccccCC----------
Confidence 466778899999999999888 788887777654 1 11 2111 2455554444332
Q ss_pred CCCCCchHHHHHHHHHHHHhhCCC-Cccccccc
Q 028617 133 AMPPQKAKPFYDSLVDKFRKSYNP-DAIKGKCA 164 (206)
Q Consensus 133 Aa~pe~A~~LY~~Fv~~lr~~~~~-~~V~~G~F 164 (206)
-++|+.|.++.+..-+.|++..-+ .+..+|-|
T Consensus 87 La~P~~A~~iL~~le~~L~~~g~eV~raPFGwy 119 (138)
T PF08915_consen 87 LASPDVAVEILKKLEERLKSRGFEVYRAPFGWY 119 (138)
T ss_dssp B--HHHHHHHHHHHHHHHHHTT-EEEE--TTEE
T ss_pred cCChHHHHHHHHHHHHHHHhCCCeEEEeCCccc
Confidence 379999999999999999654321 13367777
No 13
>cd08049 TAF8 TATA Binding Protein (TBP) Associated Factor 8. The TATA Binding Protein (TBP) Associated Factor 8 (TAF8) is one of several TAFs that bind TBP, and is involved in forming the Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and the assembly of the preinitiation complex. The TFIID complex is composed of the TBP and at least 13 TAFs. TAFs from various species were originally named by their predicted molecular weight or their electrophoretic mobility in polyacrylamide gels. A new, unified nomenclature for the pol II TAFs has been suggested to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs' functions, such as serving as activator-binding sites, involvement in the core-promo
Probab=28.70 E-value=29 Score=23.92 Aligned_cols=11 Identities=55% Similarity=1.017 Sum_probs=8.5
Q ss_pred cccCCCCCccc
Q 028617 2 YAISWLPSFPI 12 (206)
Q Consensus 2 ~~~~~~~~~~~ 12 (206)
|.=+|+|.||-
T Consensus 2 hIP~~LP~FP~ 12 (54)
T cd08049 2 HIPSWLPPFPD 12 (54)
T ss_pred CCCcCCCCCCC
Confidence 44589999984
No 14
>cd00435 ACBP Acyl CoA binding protein (ACBP) binds thiol esters of long fatty acids and coenzyme A in a one-to-one binding mode with high specificity and affinity. Acyl-CoAs are important intermediates in fatty lipid synthesis and fatty acid degradation and play a role in regulation of intermediary metabolism and gene regulation. The suggested role of ACBP is to act as a intracellular acyl-CoA transporter and pool former. ACBPs are present in a large group of eukaryotic species and several tissue-specific isoforms have been detected.
Probab=27.85 E-value=61 Score=24.28 Aligned_cols=34 Identities=21% Similarity=0.339 Sum_probs=24.8
Q ss_pred ccCcCCCCCCC--------------CCCCCCchHHHHHHHHHHHHhhC
Q 028617 121 GILKGNKPDFH--------------VAMPPQKAKPFYDSLVDKFRKSY 154 (206)
Q Consensus 121 a~~KGnRPsF~--------------~Aa~pe~A~~LY~~Fv~~lr~~~ 154 (206)
|++.+.+|++. ..|++++|...|-..++++-..+
T Consensus 37 G~~~~~~P~~~d~~~~~K~~AW~~l~~ms~~eA~~~YV~~~~~l~~~~ 84 (85)
T cd00435 37 GDCNTERPGMFDLKGRAKWDAWNSLKGMSKEDAMKAYIAKVEELIAKY 84 (85)
T ss_pred CCCCCCCCCcccHhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcc
Confidence 56667788852 45788999999988877776543
No 15
>PF10406 TAF8_C: Transcription factor TFIID complex subunit 8 C-term ; InterPro: IPR019473 This entry represents the C-terminal region of subunit 8 (also known as TAF8) of the transcription factor TFIID []. The adjacent N-terminal region generally contains a histone fold domain (IPR006565 from INTERPRO). This subunit is one of the key subunits of TFIID, being one of several general cofactors which are typically involved in gene activation to bring about the communication between gene-specific transcription factors and components of the general transcription machinery [].
Probab=25.76 E-value=35 Score=23.45 Aligned_cols=11 Identities=45% Similarity=1.002 Sum_probs=8.6
Q ss_pred cccCCCCCccc
Q 028617 2 YAISWLPSFPI 12 (206)
Q Consensus 2 ~~~~~~~~~~~ 12 (206)
|.=+|+|.||-
T Consensus 2 ~IP~~lP~fP~ 12 (51)
T PF10406_consen 2 HIPDWLPPFPP 12 (51)
T ss_pred CCcccCCCCCC
Confidence 45589999984
No 16
>PF01076 Mob_Pre: Plasmid recombination enzyme; InterPro: IPR001668 With some plasmids, recombination can occur in a site specific manner that is independent of RecA. In such cases, the recombination event requires another protein called Pre. Pre is a plasmid recombination enzyme. This protein is also known as Mob (conjugative mobilisation) [].; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005727 extrachromosomal circular DNA
Probab=25.66 E-value=46 Score=28.10 Aligned_cols=34 Identities=18% Similarity=0.574 Sum_probs=28.4
Q ss_pred CCCCCCCCCCCCchHHHHHHHHHHHHhhCCCCcc
Q 028617 126 NKPDFHVAMPPQKAKPFYDSLVDKFRKSYNPDAI 159 (206)
Q Consensus 126 nRPsF~~Aa~pe~A~~LY~~Fv~~lr~~~~~~~V 159 (206)
..|+|-..++++++++.|+.+++.+.+.++.+.|
T Consensus 87 ~~~e~~~~~~~e~~~~~~~~~~~~~~~r~g~~ni 120 (196)
T PF01076_consen 87 ASPEFFNDLDPEQQKRWFEDSLEWLQERYGNENI 120 (196)
T ss_pred CChHHhcchhhHHHHHHHHHHHHHHHHHCCchhE
Confidence 4677778899999999999999999998874333
No 17
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=23.64 E-value=47 Score=21.35 Aligned_cols=13 Identities=23% Similarity=0.462 Sum_probs=11.1
Q ss_pred CCchHHHHHHHHH
Q 028617 136 PQKAKPFYDSLVD 148 (206)
Q Consensus 136 pe~A~~LY~~Fv~ 148 (206)
-|.|+.+|++|+.
T Consensus 3 ~dRAR~IyeR~v~ 15 (32)
T PF02184_consen 3 FDRARSIYERFVL 15 (32)
T ss_pred HHHHHHHHHHHHH
Confidence 3679999999986
No 18
>PF06983 3-dmu-9_3-mt: 3-demethylubiquinone-9 3-methyltransferase; PDB: 1U7I_A 1TSJ_A 1U69_D 3L20_B 3OMS_A.
Probab=22.58 E-value=3.3e+02 Score=21.07 Aligned_cols=41 Identities=17% Similarity=0.357 Sum_probs=28.1
Q ss_pred eeceeEEEECCEEEE--------EECCeeEEEEEeecCCCHHHHHHHHHHHh
Q 028617 43 RVASASVEVEGRLVS--------EIGPGLLVLVGLHEFDTDADADYVCRKVL 86 (206)
Q Consensus 43 RV~~AsV~Vdg~~vg--------~Ig~GLlvLVGi~~~Dteed~~~ma~KIl 86 (206)
+|.+|.+.++|..+- ..++|+-+.|.+ |++++++++-+|+.
T Consensus 45 ~v~ha~l~i~g~~lm~~D~~~~~~~~~~~sl~i~~---~~~ee~~~~f~~Ls 93 (116)
T PF06983_consen 45 KVMHAELTIGGQKLMASDGGPDFPFGNNISLCIEC---DDEEEIDRIFDKLS 93 (116)
T ss_dssp SEEEEEEEETTEEEEEEEESTS----TTEEEEEEE---SSHHHHHHHHHHHH
T ss_pred cEEEEEEEECCeEEEEECCCCCCCCCCcEEEEEEc---CCHHHHHHHHHHHH
Confidence 566888888887542 345676666554 68899999988886
No 19
>PF11141 DUF2914: Protein of unknown function (DUF2914); InterPro: IPR022606 This bacterial family of proteins has no known function.
Probab=21.97 E-value=57 Score=23.38 Aligned_cols=33 Identities=24% Similarity=0.495 Sum_probs=26.1
Q ss_pred HhccccccCCCCCCcccccccccCCcEEEeccccc
Q 028617 85 VLNMRLFPNENTGKGWDLNVMQKKYGVLLVSQFTL 119 (206)
Q Consensus 85 IlnLRIFeDe~gGKkmn~SV~Dv~GeILvVSQFTL 119 (206)
-...+++++.. |+ |...|.|-+|.+|-.-.|+.
T Consensus 33 ~S~k~~~~~~~-G~-WrV~V~~~~G~~l~~~~F~V 65 (66)
T PF11141_consen 33 WSSKQNFPDQP-GD-WRVEVVDEDGQVLGSLRFSV 65 (66)
T ss_pred EEEeecCCCCC-cC-EEEEEEcCCCCEEEEEEEEE
Confidence 34456676666 64 99999999999999988874
No 20
>PF00887 ACBP: Acyl CoA binding protein; InterPro: IPR000582 Acyl-CoA-binding protein (ACBP) is a small (10 Kd) protein that binds medium- and long-chain acyl-CoA esters with very high affinity and may function as an intracellular carrier of acyl-CoA esters []. ACBP is also known as diazepam binding inhibitor (DBI) or endozepine (EP) because of its ability to displace diazepam from the benzodiazepine (BZD) recognition site located on the GABA type A receptor. It is therefore possible that this protein also acts as a neuropeptide to modulate the action of the GABA receptor []. ACBP is a highly conserved protein of about 90 residues that is found in all four eukaryotic kingdoms, Animalia, Plantae, Fungi and Protista, and in some eubacterial species []. Although ACBP occurs as a completely independent protein, intact ACB domains have been identified in a number of large, multifunctional proteins in a variety of eukaryotic species. These include large membrane-associated proteins with N-terminal ACB domains, multifunctional enzymes with both ACB and peroxisomal enoyl-CoA Delta(3), Delta(2)-enoyl-CoA isomerase domains, and proteins with both an ACB domain and ankyrin repeats (IPR002110 from INTERPRO) []. The ACB domain consists of four alpha-helices arranged in a bowl shape with a highly exposed acyl-CoA-binding site. The ligand is bound through specific interactions with residues on the protein, most notably several conserved positive charges that interact with the phosphate group on the adenosine-3'phosphate moiety, and the acyl chain is sandwiched between the hydrophobic surfaces of CoA and the protein []. Other proteins containing an ACB domain include: Endozepine-like peptide (ELP) (gene DBIL5) from mouse []. ELP is a testis-specific ACBP homologue that may be involved in the energy metabolism of the mature sperm. MA-DBI, a transmembrane protein of unknown function which has been found in mammals. MA-DBI contains a N-terminal ACB domain. DRS-1 [], a human protein of unknown function that contains a N-terminal ACB domain and a C-terminal enoyl-CoA isomerase/hydratase domain. ; GO: 0000062 fatty-acyl-CoA binding; PDB: 2CB8_A 2FJ9_A 2LBB_A 1ST7_A 3EPY_B 2FDQ_C 1NTI_A 1HB8_A 1ACA_A 1NVL_A ....
Probab=21.21 E-value=41 Score=24.74 Aligned_cols=33 Identities=24% Similarity=0.342 Sum_probs=22.8
Q ss_pred ccCcCCCCCCC--------------CCCCCCchHHHHHHHHHHHHhh
Q 028617 121 GILKGNKPDFH--------------VAMPPQKAKPFYDSLVDKFRKS 153 (206)
Q Consensus 121 a~~KGnRPsF~--------------~Aa~pe~A~~LY~~Fv~~lr~~ 153 (206)
|++...+|++. ..|++++|...|-..++++-.+
T Consensus 39 Gd~~~~~P~~~d~~~~~K~~AW~~l~gms~~eA~~~Yi~~v~~~~~~ 85 (87)
T PF00887_consen 39 GDCDTPRPGFFDIEGRAKWDAWKALKGMSKEEAMREYIELVEELIPK 85 (87)
T ss_dssp SS--S-CTTTTCHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcCCCCcchhHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHh
Confidence 56668888863 4688999999998887777554
Done!