Query 028617
Match_columns 206
No_of_seqs 153 out of 1044
Neff 3.9
Searched_HMMs 29240
Date Tue Mar 26 00:02:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028617.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028617hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1jke_A O145, D-Tyr-trnaTyr dea 100.0 7.6E-60 2.6E-64 385.1 15.0 134 37-174 1-138 (145)
2 2dbo_A D-tyrosyl-tRNA(Tyr) dea 100.0 1.4E-59 4.8E-64 384.6 15.7 140 37-180 1-145 (148)
3 1j7g_A D-tyrosyl-tRNA(Tyr) dea 100.0 1.1E-59 3.7E-64 383.8 14.7 133 37-174 1-137 (144)
4 3ko5_A D-tyrosyl-tRNA(Tyr) dea 100.0 1.5E-58 5E-63 383.8 14.0 136 37-174 1-150 (164)
5 2okv_A Probable D-tyrosyl-tRNA 100.0 2E-58 6.8E-63 394.9 14.4 144 37-181 1-148 (209)
6 1tc5_A Probable eukaryotic D-a 100.0 2.5E-53 8.4E-58 359.9 12.7 139 34-174 8-187 (194)
7 2lbb_A Acyl COA binding protei 58.0 6.2 0.00021 29.6 2.6 38 116-154 43-94 (96)
8 3epy_A Acyl-COA-binding domain 54.7 5.7 0.00019 29.2 1.9 39 116-155 36-88 (89)
9 2p1w_A 27.5 kDa virulence prot 51.1 4.8 0.00016 35.2 1.1 96 75-179 120-222 (250)
10 3bo6_A Hydrophilic protein, VI 50.9 4.9 0.00017 34.5 1.1 97 75-180 90-193 (220)
11 3i0u_A Phosphothreonine lyase 48.0 4.7 0.00016 34.6 0.5 96 75-179 88-190 (218)
12 1hbk_A ACBP, acyl-COA binding 42.8 11 0.00038 27.4 1.8 38 116-154 36-87 (89)
13 2cb8_A Acyl-COA-binding protei 42.2 12 0.0004 27.3 1.8 38 116-154 34-85 (87)
14 2hl0_A Threonyl-tRNA synthetas 34.4 25 0.00087 28.3 2.8 85 56-164 32-120 (143)
15 2gia_B MRP1, mitochondrial RNA 34.0 16 0.00055 30.2 1.6 60 105-164 30-95 (187)
16 3bid_A UPF0339 protein NMB1088 31.8 20 0.00067 25.0 1.6 27 88-116 3-29 (64)
17 2cqu_A Peroxisomal D3,D2-enoyl 31.2 34 0.0012 26.3 3.0 71 73-155 15-100 (116)
18 1st7_A ACBP, acyl-COA-binding 27.3 27 0.00094 25.1 1.7 38 116-154 33-84 (86)
19 3flv_A Acyl-COA-binding domain 27.2 34 0.0012 26.6 2.4 39 116-155 60-112 (119)
20 3fp5_A Acyl-COA binding protei 26.7 29 0.001 26.2 1.9 39 116-155 40-92 (106)
21 2cop_A Acyl-coenzyme A binding 25.9 31 0.0011 26.1 1.9 39 116-155 40-92 (109)
22 2yma_A YOS9P, protein OS-9 hom 25.7 49 0.0017 27.3 3.1 59 61-120 34-107 (161)
23 3ofh_A LDLR chaperone MESD; mo 24.4 85 0.0029 23.4 4.0 36 57-93 5-40 (89)
No 1
>1jke_A O145, D-Tyr-trnaTyr deacylase, ORF_O145; beta-alpha-barrel, hydrolase; 1.55A {Escherichia coli} SCOP: c.110.1.1
Probab=100.00 E-value=7.6e-60 Score=385.09 Aligned_cols=134 Identities=40% Similarity=0.612 Sum_probs=129.4
Q ss_pred ceEEEEeeceeEEEECCEEEEEECCeeEEEEEeecCCCHHHHHHHHHHHhccccccCCCCCCcccccccccCCcEEEecc
Q 028617 37 MRAVVQRVASASVEVEGRLVSEIGPGLLVLVGLHEFDTDADADYVCRKVLNMRLFPNENTGKGWDLNVMQKKYGVLLVSQ 116 (206)
Q Consensus 37 MR~VIQRV~~AsV~Vdg~~vg~Ig~GLlvLVGi~~~Dteed~~~ma~KIlnLRIFeDe~gGKkmn~SV~Dv~GeILvVSQ 116 (206)
||+|||||++|||+|||+++++||+|+|+||||+++||+++++|||+||+|||||+||+ || ||+||+|++||||+|||
T Consensus 1 MraviQRV~~AsV~Vdg~~vg~I~~GllvlvGv~~~Dt~~~~~~l~~Ki~~lRif~de~-gk-mn~Sv~d~~g~iL~VSQ 78 (145)
T 1jke_A 1 MIALIQRVTRASVTVEGEVTGEIGAGLLVLLGVEKDDDEQKANRLCERVLGYRIFSDAE-GK-MNLNVQQAGGSVLVVSQ 78 (145)
T ss_dssp CEEEEEEEEEEEEEETTEEEEEESSEEEEEEECBTTCCHHHHHHHHHHHHHCCCEECTT-SC-EEECTTTTTCEEEEEEC
T ss_pred CEEEEEEECeEEEEECCEEEEEeCCeEEEEEEEeCCCCHHHHHHHHHHHhhEEeccCCC-CC-ccCCHHHcCCCEEEEEc
Confidence 99999999999999999999999999999999999999999999999999999999999 76 99999999999999999
Q ss_pred ccccccC-cCCCCCCCCCCCCCchHHHHHHHHHHHHhhCCCCccccccc---eeEEEEeccc
Q 028617 117 FTLYGIL-KGNKPDFHVAMPPQKAKPFYDSLVDKFRKSYNPDAIKGKCA---FQLHLVLRSF 174 (206)
Q Consensus 117 FTL~a~~-KGnRPsF~~Aa~pe~A~~LY~~Fv~~lr~~~~~~~V~~G~F---~qv~lv~~~~ 174 (206)
|||||++ ||||||||.||+||+|++||++|+++|++.+ .+|++|+| |+|+|+||+-
T Consensus 79 FTL~ad~~KG~RPsF~~Aa~p~~A~~LY~~f~~~l~~~~--~~V~tG~FGA~M~V~l~NDGP 138 (145)
T 1jke_A 79 FTLAADTERGMRPSFSKGASPDRAEALYDYFVERCRQQE--MNTQTGRFAADMQVSLVNDGP 138 (145)
T ss_dssp GGGGSBCSSSSSCBCSSBCCHHHHHHHHHHHHHHHHHTT--CCEEECCTTSCEEEEEEEEEE
T ss_pred cccccccCCCCCCCccccCCHHHHHHHHHHHHHHHHhcC--CcceeCccCCCcEEEEEeCCC
Confidence 9999996 9999999999999999999999999999875 47999999 9999999973
No 2
>2dbo_A D-tyrosyl-tRNA(Tyr) deacylase; D-amino acid, D-tyrosine, structural genomi NPPSFA, national project on protein structural and function analyses; 2.76A {Aquifex aeolicus}
Probab=100.00 E-value=1.4e-59 Score=384.59 Aligned_cols=140 Identities=37% Similarity=0.617 Sum_probs=131.6
Q ss_pred ceEEEEeeceeEEEECCEEEEEECCeeEEEEEeecCCCHHHHHHHHHHHhccccccCCCCCCcccccccccCCcEEEecc
Q 028617 37 MRAVVQRVASASVEVEGRLVSEIGPGLLVLVGLHEFDTDADADYVCRKVLNMRLFPNENTGKGWDLNVMQKKYGVLLVSQ 116 (206)
Q Consensus 37 MR~VIQRV~~AsV~Vdg~~vg~Ig~GLlvLVGi~~~Dteed~~~ma~KIlnLRIFeDe~gGKkmn~SV~Dv~GeILvVSQ 116 (206)
||+|||||++|||+|||+++++||+|+|+||||+++||+++++|||+||+|||||+||+ || ||+||+|++||||+|||
T Consensus 1 MraviQRV~~AsV~Vdg~~vg~I~~GllvlvGv~~~Dt~~~~~~l~~Kil~lRif~De~-gk-mn~Sv~d~~g~iL~VSQ 78 (148)
T 2dbo_A 1 MRAVIQRVKKSWVEVDGKVVGSINEGLNVFLGVRKGDTEEDIEKLVNKILNLRIFEDER-GK-FQYSVLDIKGEILVVSQ 78 (148)
T ss_dssp CEEEEEEEEEEEEEETTEEEEEESSEEEEEEECBTTCCHHHHHHHHHHHHHCCCBCCSS-CS-SCBCTTTTTCEEEEEEC
T ss_pred CEEEEEEECeEEEEECCEEEEEeCCeEEEEEEEeCCCCHHHHHHHHHHHhcEEeccCCC-CC-cccCHHHcCCCEEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999 76 99999999999999999
Q ss_pred ccccccC-cCCCCCCCCCCCCCchHHHHHHHHHHHHhhCCCCccccccc---eeEEEEeccc-ceeeeh
Q 028617 117 FTLYGIL-KGNKPDFHVAMPPQKAKPFYDSLVDKFRKSYNPDAIKGKCA---FQLHLVLRSF-SFLYKS 180 (206)
Q Consensus 117 FTL~a~~-KGnRPsF~~Aa~pe~A~~LY~~Fv~~lr~~~~~~~V~~G~F---~qv~lv~~~~-~~~~~~ 180 (206)
|||||++ ||||||||.||+||+|++||++|+++|++.+ .+|++|+| |+|+|+||+- .++..|
T Consensus 79 FTL~ad~~KG~RPsF~~Aa~p~~A~~LY~~f~~~l~~~g--~~V~tG~FGA~M~V~l~NDGPVTi~lds 145 (148)
T 2dbo_A 79 FTLYANVKKGRRPSFEEAEEPKRAKELYEKFVDKIKESG--LKVETGIFGAMMDVFIENWGPVTIIIDS 145 (148)
T ss_dssp GGGGCBCSSSSSCBCTTBCCHHHHHHHHHHHHHHHHTTC--SCEEECCSSSCCEEEEEEEEEEEEEEEG
T ss_pred eecccccCCCCCCCccccCCHHHHHHHHHHHHHHHHhcC--CcceECccCCCcEEEEEECCCEEEEEEC
Confidence 9999995 9999999999999999999999999999874 58999999 9999999984 333444
No 3
>1j7g_A D-tyrosyl-tRNA(Tyr) deacylase; D-Tyr-tRNA(Tyr) deacylase, structural genomics, hypothetical structure 2 function project, S2F; 1.64A {Haemophilus influenzae rd KW20} SCOP: c.110.1.1
Probab=100.00 E-value=1.1e-59 Score=383.84 Aligned_cols=133 Identities=38% Similarity=0.553 Sum_probs=128.6
Q ss_pred ceEEEEeeceeEEEECCEEEEEECCeeEEEEEeecCCCHHHHHHHHHHHhccccccCCCCCCcccccccccCCcEEEecc
Q 028617 37 MRAVVQRVASASVEVEGRLVSEIGPGLLVLVGLHEFDTDADADYVCRKVLNMRLFPNENTGKGWDLNVMQKKYGVLLVSQ 116 (206)
Q Consensus 37 MR~VIQRV~~AsV~Vdg~~vg~Ig~GLlvLVGi~~~Dteed~~~ma~KIlnLRIFeDe~gGKkmn~SV~Dv~GeILvVSQ 116 (206)
||+|||||++|||+|||+++++||+|+|+||||+++||+++++|||+||+|||||+||+ || ||+||+|++||||+|||
T Consensus 1 MraviQRV~~AsV~Vdg~~vg~I~~GllvlvGv~~~Dt~~~~~~l~~Kil~lRif~de~-gk-mn~Sv~d~~g~iL~VSQ 78 (144)
T 1j7g_A 1 MIALIQRVSQAKVDVKGETIGKIGKGLLVLLGVEKEDNREKADKLAEKVLNYRIFSDEN-DK-MNLNVQQAQGELLIVSQ 78 (144)
T ss_dssp CEEEEEEEEEEEEEETTEEEEEESSEEEEEEECBTTCCHHHHHHHHHHHHHCCCEECTT-SC-EEECTTTTTCEEEEEEC
T ss_pred CEEEEEEECeEEEEECCEEEEEECCeEEEEEEEeCCCCHHHHHHHHHHHhhEEeccCcC-CC-ccCCHHHcCCCEEEEEc
Confidence 99999999999999999999999999999999999999999999999999999999999 76 99999999999999999
Q ss_pred ccccccC-cCCCCCCCCCCCCCchHHHHHHHHHHHHhhCCCCccccccc---eeEEEEeccc
Q 028617 117 FTLYGIL-KGNKPDFHVAMPPQKAKPFYDSLVDKFRKSYNPDAIKGKCA---FQLHLVLRSF 174 (206)
Q Consensus 117 FTL~a~~-KGnRPsF~~Aa~pe~A~~LY~~Fv~~lr~~~~~~~V~~G~F---~qv~lv~~~~ 174 (206)
|||||++ ||||||||.||+||+|++||++|+++|++. .+|++|+| |+++|+||+-
T Consensus 79 FTL~ad~~KG~RPsF~~Aa~p~~A~~LY~~f~~~l~~~---~~V~tG~FGA~M~V~l~NDGP 137 (144)
T 1j7g_A 79 FTLAADTQKGLRPSFSKGASPALANELYEYFIQKCAEK---LPVSTGQFAADMQVSLTNDGP 137 (144)
T ss_dssp GGGGCBCSSTTSCBCTTBCCHHHHHHHHHHHHHHHHTT---SCEEECCTTSCCEEEEEEEEE
T ss_pred cccccccCCCCCCCccccCCHHHHHHHHHHHHHHHhcC---CCeeeCccCCCeEEEEEECCC
Confidence 9999996 999999999999999999999999999976 57999999 9999999973
No 4
>3ko5_A D-tyrosyl-tRNA(Tyr) deacylase; DTD, ADP, hydrolase; HET: ADP; 2.09A {Plasmodium falciparum} PDB: 3knp_A 3knf_A* 3ko3_A* 3ko4_A* 3ko7_A* 3ko9_A* 3kob_A* 3koc_A* 3kod_A 3lmt_A 3lmu_A 3lmv_A*
Probab=100.00 E-value=1.5e-58 Score=383.80 Aligned_cols=136 Identities=46% Similarity=0.753 Sum_probs=129.4
Q ss_pred ceEEEEeeceeEEEE----CC------EEEEEECCeeEEEEEeecCCCHHHHHHHHHHHhccccccCCCCCCcccccccc
Q 028617 37 MRAVVQRVASASVEV----EG------RLVSEIGPGLLVLVGLHEFDTDADADYVCRKVLNMRLFPNENTGKGWDLNVMQ 106 (206)
Q Consensus 37 MR~VIQRV~~AsV~V----dg------~~vg~Ig~GLlvLVGi~~~Dteed~~~ma~KIlnLRIFeDe~gGKkmn~SV~D 106 (206)
||+|||||++|+|+| || +++++||+|+|+||||+++||+++++|||+||+|||||+||+ | +||+||+|
T Consensus 1 MraviQRV~~AsV~V~~~~dg~s~~~~~~vg~Ig~GllvlvGv~~~Dt~~~~~~l~~Kil~lRiF~de~-g-kmn~Sv~d 78 (164)
T 3ko5_A 1 MRVVIQRVKGAILSVRKENIGENEKELEIISEIKNGLICFLGIHKNDTWEDALYIIRKCLNLRLWNNDN-K-TWDKNVKD 78 (164)
T ss_dssp CEEEEEEEEEEEEEEECC--------EEEEEEESSEEEEEEECBTTCCHHHHHHHHHHHHHCCCEEETT-E-EEEECTTT
T ss_pred CEEEEEEeCeEEEEEeecCCCCccccceEEEEeCCceEEEEEEcCCCCHHHHHHHHHHHhcEEeecCCC-c-ccccCHHH
Confidence 999999999999999 99 899999999999999999999999999999999999999997 6 59999999
Q ss_pred cCCcEEEeccccccccC-cCCCCCCCCCCCCCchHHHHHHHHHHHHhhCCCCccccccc---eeEEEEeccc
Q 028617 107 KKYGVLLVSQFTLYGIL-KGNKPDFHVAMPPQKAKPFYDSLVDKFRKSYNPDAIKGKCA---FQLHLVLRSF 174 (206)
Q Consensus 107 v~GeILvVSQFTL~a~~-KGnRPsF~~Aa~pe~A~~LY~~Fv~~lr~~~~~~~V~~G~F---~qv~lv~~~~ 174 (206)
++||||+||||||||++ ||||||||.||+|++|++||++|+++|++.+.+.+|++|+| |+|+|+||+-
T Consensus 79 ~~G~iL~VSQFTL~ad~~KG~RPsF~~Aa~p~~A~~LY~~fv~~lr~~~~~~~V~tG~FGA~M~V~l~NDGP 150 (164)
T 3ko5_A 79 LNYELLIVSQFTLFGNTKKGNKPDFHLAKEPNEALIFYNKIIDEFKKQYNDDKIKIGKFGNYMNIDVTNDGP 150 (164)
T ss_dssp TTCEEEEEECGGGGCBCSSSSSCBCTTBCCHHHHHHHHHHHHHHHHHHSCTTSEEECCTTSCEEEEEEEEEE
T ss_pred cCCCEEEEEccccccccCCCCCCcccccCCHHHHHHHHHHHHHHHHhhCCCCceEecccCCceEEEEEECCC
Confidence 99999999999999996 99999999999999999999999999999886679999999 9999999985
No 5
>2okv_A Probable D-tyrosyl-tRNA(Tyr) deacylase 1; DNA replication, DUE, ATPase, tRNA deacylase, hydrolase; 2.00A {Homo sapiens}
Probab=100.00 E-value=2e-58 Score=394.91 Aligned_cols=144 Identities=47% Similarity=0.770 Sum_probs=136.1
Q ss_pred ceEEEEeeceeEEEECCEEEEEECCeeEEEEEeecCCCHHHHHHHHHHHhccccccCCCCCCcccccccccCCcEEEecc
Q 028617 37 MRAVVQRVASASVEVEGRLVSEIGPGLLVLVGLHEFDTDADADYVCRKVLNMRLFPNENTGKGWDLNVMQKKYGVLLVSQ 116 (206)
Q Consensus 37 MR~VIQRV~~AsV~Vdg~~vg~Ig~GLlvLVGi~~~Dteed~~~ma~KIlnLRIFeDe~gGKkmn~SV~Dv~GeILvVSQ 116 (206)
||+|||||++|+|+|||+++++||+|||+||||+++||+++++|||+||+|||||+||+ ||.||+||+|++|+||+|||
T Consensus 1 MRaViQRV~~AsV~Vdg~vvg~Ig~GllvLvGv~~~Dt~~d~~~la~Kil~LRIF~De~-GK~mn~Sv~Dv~GeiLvVSQ 79 (209)
T 2okv_A 1 MKAVVQRVTRASVTVGGEQISAIGRGICVLLGISLEDTQKELEHMVRKILNLRVFEDES-GKHWSKSVMDKQYEILCVSQ 79 (209)
T ss_dssp CEEEEEEEEEEEEEETTEEEEEESSEEEEEEECBTTCCHHHHHHHHHHHHHCCCBCCTT-CCTTCBCHHHHTCEEEEEEC
T ss_pred CEEEEEEeCeEEEEECCEEEEEeCCeEEEEEEEeCCCCHHHHHHHHHHHhhEEeccCCC-CCcccCCHHHcCCCEEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999 76699999999999999999
Q ss_pred ccccccCcCCCCCCCCCCCCCchHHHHHHHHHHHHhhCCCCccccccc---eeEEEEeccc-ceeeehh
Q 028617 117 FTLYGILKGNKPDFHVAMPPQKAKPFYDSLVDKFRKSYNPDAIKGKCA---FQLHLVLRSF-SFLYKSR 181 (206)
Q Consensus 117 FTL~a~~KGnRPsF~~Aa~pe~A~~LY~~Fv~~lr~~~~~~~V~~G~F---~qv~lv~~~~-~~~~~~~ 181 (206)
|||||++||||||||.||+|++|++||++|+++|++.+.+.+|++|+| |+|+|+||+- .+++.|+
T Consensus 80 FTL~ad~KG~RPsF~~Aa~pe~A~~LYe~Fv~~lr~~~~~~~V~tG~FGA~M~V~LvNDGPVTi~lds~ 148 (209)
T 2okv_A 80 FTLQCVLKGNKPDFHLAMPTEQAEGFYNSFLEQLRKTYRPELIKDGKFGAYMQVHIQNDGPVTIELESP 148 (209)
T ss_dssp GGGSCCCSSSSCCCTTBCCHHHHHHHHHHHHHHHHHHSCGGGEEECCTTSCEEEEEEEEEEEEEEEECC
T ss_pred eeccccCCCCCCCccccCCHHHHHHHHHHHHHHHHHhCCCCccEeCcccCCcEEEEEeCCCEEEEEECC
Confidence 999999999999999999999999999999999999876567999999 9999999984 4446554
No 6
>1tc5_A Probable eukaryotic D-amino acid tRNA deacylase, LMAJ005534AAA; SGPP, structural genomics, PSI; 1.93A {Leishmania major} SCOP: c.110.1.1
Probab=100.00 E-value=2.5e-53 Score=359.92 Aligned_cols=139 Identities=17% Similarity=0.204 Sum_probs=132.4
Q ss_pred cccceEEEEeeceeEEEECCEE-EEEECCeeEEEEEeecC-----CCHHHHHHHHHHHhcccccc--CCCCCCccc--cc
Q 028617 34 INAMRAVVQRVASASVEVEGRL-VSEIGPGLLVLVGLHEF-----DTDADADYVCRKVLNMRLFP--NENTGKGWD--LN 103 (206)
Q Consensus 34 ~~~MR~VIQRV~~AsV~Vdg~~-vg~Ig~GLlvLVGi~~~-----Dteed~~~ma~KIlnLRIFe--De~gGKkmn--~S 103 (206)
-|+.|+|||||++|+|+|||++ +++||+|+|+||||+++ ||+++++|||+||+|+|||+ ||+ | +|| +|
T Consensus 8 ~~~~r~viQRV~~AsV~Vdg~~~vg~Ig~Gllvlvgi~~~~~~~~Dt~~~~~~l~~Kil~lRIF~~~de~-g-kmn~~~S 85 (194)
T 1tc5_A 8 HMTIRVMLQAMDQGHLLVNNVDKYVRAGRGVMVYIAFLSDRDSAPITDEALRHAVGVLLHTKIFTHFSPE-K-MINQPQS 85 (194)
T ss_dssp CCEEEEEEEEESEEEEECSSSSCEEEECSEEEEEEEEECCTTCCCCCHHHHHHHHHHHHHSCCBSCSCTT-C-SSCCCBC
T ss_pred ceeEEEEEEEECeeEEEECCeEEEEEECCeEEEEEEEecCCCCCCCCHHHHHHHHHHhhcEEeccccCcc-c-CcccCCC
Confidence 4788999999999999999999 99999999999999999 99999999999999999999 998 6 499 99
Q ss_pred ccccCC-cEEEeccccccccCcCCCCCCCCCCCCCchHHHHHHHHHHHHhhCC---------------------------
Q 028617 104 VMQKKY-GVLLVSQFTLYGILKGNKPDFHVAMPPQKAKPFYDSLVDKFRKSYN--------------------------- 155 (206)
Q Consensus 104 V~Dv~G-eILvVSQFTL~a~~KGnRPsF~~Aa~pe~A~~LY~~Fv~~lr~~~~--------------------------- 155 (206)
|+|++| |||+||||||||++||||||||.||+||+|++||++||+.|++.++
T Consensus 86 v~D~~g~eiLvVSQFTL~g~~KGrrPsF~~Aa~pe~A~~LY~~Fv~~lr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (194)
T 1tc5_A 86 LEECPEMDILIVPQASLGGKVKGRSVQFHQLVAKDVGAALYDRFCHFVRVARGVDESRVDANGAPRSEGDAPKAEGWIKY 165 (194)
T ss_dssp STTCTTCEEEEEECGGGGCEEETTEEECTTBCCHHHHHHHHHHHHHHHHHHTTCCTTSBCTTSSBSSGGGSCCSSSCCCC
T ss_pred hhhcCCCeEEEEEccccccccCCCCCCcccCCCHHHHHHHHHHHHHHHHHhhCccccccccccccccccccccccccccc
Confidence 999999 9999999999999999999999999999999999999999998863
Q ss_pred CCccccccc---eeEEEEeccc
Q 028617 156 PDAIKGKCA---FQLHLVLRSF 174 (206)
Q Consensus 156 ~~~V~~G~F---~qv~lv~~~~ 174 (206)
+.+|++|+| |+++|+||+-
T Consensus 166 ~~~V~tG~FGa~M~V~l~NDGP 187 (194)
T 1tc5_A 166 NSRVISGTFGNRQGLRFESEGP 187 (194)
T ss_dssp CSCEEECCTTSCCCEEEEESCC
T ss_pred CCceeECcccCCeEEEEEeCCC
Confidence 568999999 9999999973
No 7
>2lbb_A Acyl COA binding protein; protein binding, structural genomi seattle structural genomics center for infectious disease,; NMR {Babesia bovis}
Probab=57.95 E-value=6.2 Score=29.60 Aligned_cols=38 Identities=32% Similarity=0.379 Sum_probs=30.3
Q ss_pred cccccccCcCCCCCCC--------------CCCCCCchHHHHHHHHHHHHhhC
Q 028617 116 QFTLYGILKGNKPDFH--------------VAMPPQKAKPFYDSLVDKFRKSY 154 (206)
Q Consensus 116 QFTL~a~~KGnRPsF~--------------~Aa~pe~A~~LY~~Fv~~lr~~~ 154 (206)
|.| .|++.+.||++- ..+++++|...|-..++++...+
T Consensus 43 QAt-~Gd~~~~~Pg~~d~~graKw~AW~~l~gmS~eeAm~~YI~lv~~l~~~~ 94 (96)
T 2lbb_A 43 QAT-VGDCNKPKPGMLQLQEKYKWEAWNALRGMSTESAKEAYVKLLDTLAPSW 94 (96)
T ss_dssp HTT-TSSCCCCCCCSSCSHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHCGGG
T ss_pred HHh-cCCCCCCCCCcccHHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhchh
Confidence 666 378888999763 57999999999998888887655
No 8
>3epy_A Acyl-COA-binding domain-containing protein 7; acyl-COA binding protein, fatty acid, lipid metabolism, structural genomics; HET: COA PLM; 2.00A {Homo sapiens} SCOP: a.11.1.1
Probab=54.69 E-value=5.7 Score=29.17 Aligned_cols=39 Identities=18% Similarity=0.228 Sum_probs=30.5
Q ss_pred cccccccCcCCCCCCCC--------------CCCCCchHHHHHHHHHHHHhhCC
Q 028617 116 QFTLYGILKGNKPDFHV--------------AMPPQKAKPFYDSLVDKFRKSYN 155 (206)
Q Consensus 116 QFTL~a~~KGnRPsF~~--------------Aa~pe~A~~LY~~Fv~~lr~~~~ 155 (206)
|.|. |++.+.||++.+ .+++++|...|-..++++...|+
T Consensus 36 QAt~-Gd~~~~~Pg~~d~~~~aKw~AW~~l~g~s~eeA~~~Yi~~v~~l~~ky~ 88 (89)
T 3epy_A 36 QAIV-GDINIACPGMLDLKGKAKWEAWNLKKGLSTEDATSAYISKAKELIEKYG 88 (89)
T ss_dssp HHHT-CSCCSCCTTTTCHHHHHHHHHHHTTTTCCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHhh-CCCCCCCCcccchHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHhhhhc
Confidence 5554 677788998643 68899999999999998887663
No 9
>2p1w_A 27.5 kDa virulence protein; beta sheet- alpha helix, lyase; 2.30A {Salmonella enteritidis}
Probab=51.14 E-value=4.8 Score=35.16 Aligned_cols=96 Identities=13% Similarity=0.210 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHhccccccCCCCCCccccccccc-----CCcEEEeccccccccCcCCCCCCCCC-CCCCchHHHHHHHHH
Q 028617 75 DADADYVCRKVLNMRLFPNENTGKGWDLNVMQK-----KYGVLLVSQFTLYGILKGNKPDFHVA-MPPQKAKPFYDSLVD 148 (206)
Q Consensus 75 eed~~~ma~KIlnLRIFeDe~gGKkmn~SV~Dv-----~GeILvVSQFTL~a~~KGnRPsF~~A-a~pe~A~~LY~~Fv~ 148 (206)
.+.+...-+-|..|=.-+|..=+ ||..+ |+ +-.|=+=-|||||.+ |+=-++ -+|+..+. ...|++
T Consensus 120 ~~qv~qAF~al~~LL~SeDSPvD-KWKVT--DM~rv~~qsRV~~GAQfTLY~K-----pd~edsqYs~~~l~k-~r~fi~ 190 (250)
T 2p1w_A 120 RDMVPQAFQALSGLLFSEDSPVD-KWKVT--DMEKVVQQARVSLGAQFTLYIK-----PDQENSQYSASFLHK-TRQFIE 190 (250)
T ss_dssp GGGHHHHHHHHHHHHTCTTCSCC-EEEEE--CHHHHHHTTCCCSSCCEEEECC-----CSSTTSCCCHHHHHH-HHHHHH
T ss_pred HHHHHHHHHHHhHhhcCCCCCcc-eeeec--ccccCcchhhhcccceEEEEec-----CccccccCCHHHHHH-HHHHHH
Confidence 35566655556666344443323 46533 32 233333459999984 222212 23333333 467898
Q ss_pred HHHhhCCCCccccccceeEEEEeccccee-ee
Q 028617 149 KFRKSYNPDAIKGKCAFQLHLVLRSFSFL-YK 179 (206)
Q Consensus 149 ~lr~~~~~~~V~~G~F~qv~lv~~~~~~~-~~ 179 (206)
.+..+....-|+.|..=+-+.-++..+|+ |.
T Consensus 191 ~lE~~L~~aGi~pg~~P~SDV~p~~W~yaSYR 222 (250)
T 2p1w_A 191 CLESRLSENGVISGQCPESDVHPENWKYLSYR 222 (250)
T ss_dssp HHHHHHHHTTCCBCCCCTTCBCCTTCSSEEEE
T ss_pred HHHHHHHHcCCCCCCCCccccCccccceeeeh
Confidence 88877644457789887778888888888 75
No 10
>3bo6_A Hydrophilic protein, VIRA protein; alpha/beta fold of phosphothreonine lyase; 1.40A {Chromobacterium violaceum} PDB: 2z8n_A 2z8m_A 2z8o_A* 2z8p_A* 2q8y_A*
Probab=50.85 E-value=4.9 Score=34.53 Aligned_cols=97 Identities=10% Similarity=0.201 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHhccccccCCCCCCcccccccccC-----CcEEEeccccccccCcCCCCCCCCC-CCCCchHHHHHHHHH
Q 028617 75 DADADYVCRKVLNMRLFPNENTGKGWDLNVMQKK-----YGVLLVSQFTLYGILKGNKPDFHVA-MPPQKAKPFYDSLVD 148 (206)
Q Consensus 75 eed~~~ma~KIlnLRIFeDe~gGKkmn~SV~Dv~-----GeILvVSQFTL~a~~KGnRPsF~~A-a~pe~A~~LY~~Fv~ 148 (206)
.+.+...-+-|..|=.-+|..=+ ||..+ |++ -.|=+=-|||||.+ |+=-++ -+|+..+. ...|++
T Consensus 90 ~~qv~~AF~al~~LL~SeDSPvD-KWKVT--DM~rv~~qsRV~~GAQfTLY~K-----pd~edsqYs~~~l~k-~r~fi~ 160 (220)
T 3bo6_A 90 REQVPQAFQALSGLLFSVDSPID-KWKVT--DMERVDQQSRVAVGAQFTLYVK-----PDQENSQYSASSLHN-TRQFIE 160 (220)
T ss_dssp GGGHHHHHHHHHHHHTCTTCSCS-EEEEE--CTTTBCTTSTTTSSCCEEEECC-----CSSTTSCCCHHHHHH-HHHHHH
T ss_pred HHHHHHHHHHHHHhhcCCCCCcc-eeeec--cccccchhhhhcccceEEEEec-----CccccccCCHHHHHH-HHHHHH
Confidence 34555555555555333443323 46432 332 23333349999985 222212 23333333 467888
Q ss_pred HHHhhCCCCccccccceeEEEEeccccee-eeh
Q 028617 149 KFRKSYNPDAIKGKCAFQLHLVLRSFSFL-YKS 180 (206)
Q Consensus 149 ~lr~~~~~~~V~~G~F~qv~lv~~~~~~~-~~~ 180 (206)
.+..+....-|..|..=+-+.-++..+|+ |..
T Consensus 161 ~lE~~L~~aGi~pg~~P~SDV~p~~W~yaSYRN 193 (220)
T 3bo6_A 161 CLESRLSESGLMPGQYPESDVHPENWKYVSYRN 193 (220)
T ss_dssp HHHHHHHHTTCCBCCCCTTCBCCTTCSSEEEEE
T ss_pred HHHHHHHHcCCCCCCCCccccCccccceeeehh
Confidence 88776644457788887777888888888 753
No 11
>3i0u_A Phosphothreonine lyase OSPF; APO-structure, type III effector, phospho lyase, secreted, virulence, structural genomics; 2.70A {Shigella flexneri}
Probab=47.95 E-value=4.7 Score=34.58 Aligned_cols=96 Identities=10% Similarity=0.128 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHhccccccCCCCCCcccccccccC-----CcEEEeccccccccCcCCCCCCCCC-CCCCchHHHHHHHHH
Q 028617 75 DADADYVCRKVLNMRLFPNENTGKGWDLNVMQKK-----YGVLLVSQFTLYGILKGNKPDFHVA-MPPQKAKPFYDSLVD 148 (206)
Q Consensus 75 eed~~~ma~KIlnLRIFeDe~gGKkmn~SV~Dv~-----GeILvVSQFTL~a~~KGnRPsF~~A-a~pe~A~~LY~~Fv~ 148 (206)
.+++...-+-|.+|=.-+|..=+ ||..+ |++ -.|=+=-|||||.+. +=-++ -+|+..+. ...|++
T Consensus 88 ~~qv~~AF~ai~~LL~SeDSPvD-KWKVT--DM~rv~~qsRV~~GAQfTLY~Kp-----d~eds~Ys~~~l~k-~r~fi~ 158 (218)
T 3i0u_A 88 REQVPLAFQILSGLLFSEDSPID-KWKIT--DMNRVSQQSRVGIGAQFTLYVKS-----DQECSQYSALLLHK-IRQFIM 158 (218)
T ss_dssp GGGHHHHHHHHHHHHTCTTCSCS-EEEEE--CTTTCC----CCSSCCEEEEEEC-----CSSTTCCCHHHHHH-HHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCcc-eeeec--ccccCcchhhhcccceEEEEecC-----ccccccCCHHHHHH-HHHHHH
Confidence 45555555555555333443323 46432 332 233334599999852 21111 23333333 367888
Q ss_pred HHHhhCCCCccccccceeEEEEeccccee-ee
Q 028617 149 KFRKSYNPDAIKGKCAFQLHLVLRSFSFL-YK 179 (206)
Q Consensus 149 ~lr~~~~~~~V~~G~F~qv~lv~~~~~~~-~~ 179 (206)
.+..+....-|..|..=+-++-++..+|+ |.
T Consensus 159 ~iE~~L~~agi~pg~~P~SDV~p~~W~yaSYR 190 (218)
T 3i0u_A 159 CLESNLLRSKIAPGEYPASDVRPEDWKYVSYR 190 (218)
T ss_dssp HHHHHHHHTTCCBCCCCTTCBCCTTCSSEEEE
T ss_pred HHHHHHHHcCCCCCCCCccccCccccceeeeh
Confidence 88776644457788887777778888888 64
No 12
>1hbk_A ACBP, acyl-COA binding protein; fatty acid metabolism; HET: COA MYR; 2.0A {Plasmodium falciparum} SCOP: a.11.1.1
Probab=42.81 E-value=11 Score=27.37 Aligned_cols=38 Identities=21% Similarity=0.277 Sum_probs=28.5
Q ss_pred cccccccCcCCCCCCC--------------CCCCCCchHHHHHHHHHHHHhhC
Q 028617 116 QFTLYGILKGNKPDFH--------------VAMPPQKAKPFYDSLVDKFRKSY 154 (206)
Q Consensus 116 QFTL~a~~KGnRPsF~--------------~Aa~pe~A~~LY~~Fv~~lr~~~ 154 (206)
|.|. |++.+.||++- ..|++++|...|-..++++...+
T Consensus 36 QAt~-Gd~~~~~Pg~~d~~~~aKw~AW~~l~gms~eeA~~~YI~~v~~l~~~~ 87 (89)
T 1hbk_A 36 QSTI-GNCNIKEPSAHKYIDRKKYEAWKSVENLNREDAQKRYVDIVSEIFPYW 87 (89)
T ss_dssp HHHT-CSCCSCCCCTTSHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHCTTT
T ss_pred Hhhc-CCCCCCCCCccCHHhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccc
Confidence 4553 67778888762 46899999999988888776554
No 13
>2cb8_A Acyl-COA-binding protein; acyl-coenzyme A binding protein, fatty acid, acetylation, alternative splicing, lipid-binding, transport; HET: MYA; 1.4A {Homo sapiens} PDB: 2fj9_A 1aca_A* 1hb6_A 1hb8_A 1nti_A 1nvl_A* 2abd_A 2fdq_A
Probab=42.20 E-value=12 Score=27.27 Aligned_cols=38 Identities=24% Similarity=0.398 Sum_probs=29.4
Q ss_pred cccccccCcCCCCCCC--------------CCCCCCchHHHHHHHHHHHHhhC
Q 028617 116 QFTLYGILKGNKPDFH--------------VAMPPQKAKPFYDSLVDKFRKSY 154 (206)
Q Consensus 116 QFTL~a~~KGnRPsF~--------------~Aa~pe~A~~LY~~Fv~~lr~~~ 154 (206)
|.|. |++.+.||++- ..+++++|...|-..++++...|
T Consensus 34 QAt~-Gd~~~~~Pg~~d~~~~aKw~AW~~l~gms~eeA~~~Yi~~v~~l~~~~ 85 (87)
T 2cb8_A 34 QATV-GDINTERPGMLDFTGKAKWDAWNELKGTSKEDAMKAYINKVEELKKKY 85 (87)
T ss_dssp HHHT-CSCCSCCCCTTCHHHHHHHHHHHTTTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhh-CCCCCCCCCcccHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHh
Confidence 5553 67778888752 46899999999999998887665
No 14
>2hl0_A Threonyl-tRNA synthetase; translation, editing, aminoacyl-tRNA synthetase, enzyme mechanism, enantioselectivity, ligase; HET: A3S; 1.86A {Pyrococcus abyssi} PDB: 2hkz_A 1y2q_A* 2hl2_A* 3pd2_A* 2hl1_A* 3pd3_A* 3pd4_A* 3pd5_A*
Probab=34.35 E-value=25 Score=28.31 Aligned_cols=85 Identities=8% Similarity=0.039 Sum_probs=58.7
Q ss_pred EEEECCeeEEEEEeecCCC---HHHHHHHHHHHhccccccCCCCCCcccccccccCCcEEEeccccccccCcCCCCCCCC
Q 028617 56 VSEIGPGLLVLVGLHEFDT---DADADYVCRKVLNMRLFPNENTGKGWDLNVMQKKYGVLLVSQFTLYGILKGNKPDFHV 132 (206)
Q Consensus 56 vg~Ig~GLlvLVGi~~~Dt---eed~~~ma~KIlnLRIFeDe~gGKkmn~SV~Dv~GeILvVSQFTL~a~~KGnRPsF~~ 132 (206)
-+.+..-+|+|+.++++|+ +..+++.++-|.++ + +| .+. -.|++=|=.-|..+
T Consensus 32 ~~~~e~aLVvF~~VE~~De~~~~~vv~~av~eI~~~--a-----~k-v~~------~~ivlYPyAHLSs~---------- 87 (143)
T 2hl0_A 32 RGRMEEVLVAFISVEKVDEKNPEEVSLKAIEEISKV--A-----EQ-VKA------ENVFVYPFAHLSSE---------- 87 (143)
T ss_dssp EEEEEEEEEEEEECBGGGGGCHHHHHHHHHHHHHHH--H-----HH-HTC------CEEEEEECGGGCSS----------
T ss_pred ccceeeeEEEEEEEccCCcCCHHHHHHHHHHHHHHH--H-----Hh-cCC------CEEEEeccccccCc----------
Confidence 5677888999999999999 78888888877754 1 11 211 13444554444332
Q ss_pred CCCCCchHHHHHHHHHHHHhhC-CCCccccccc
Q 028617 133 AMPPQKAKPFYDSLVDKFRKSY-NPDAIKGKCA 164 (206)
Q Consensus 133 Aa~pe~A~~LY~~Fv~~lr~~~-~~~~V~~G~F 164 (206)
-++|+.|.++-...-+.|++.. .-.+..+|-|
T Consensus 88 La~P~~A~~iL~~le~~L~~~g~eV~raPFGwy 120 (143)
T 2hl0_A 88 LAKPSVAMDILNRVYQGLKERGFNVGKAPFGYY 120 (143)
T ss_dssp BCCHHHHHHHHHHHHHHHHHTTCEEEECCSSEE
T ss_pred cCChHHHHHHHHHHHHHHHhCCCeEEEeCCccc
Confidence 3799999999999999998753 2123367776
No 15
>2gia_B MRP1, mitochondrial RNA-binding protein 1; T. brucei, guide RNA, matchmaking, RNA editing, translation; 1.89A {Trypanosoma brucei} SCOP: d.18.1.4 PDB: 2gid_B 2gje_D
Probab=34.04 E-value=16 Score=30.23 Aligned_cols=60 Identities=17% Similarity=0.147 Sum_probs=36.3
Q ss_pred cccCCcEEEeccccccccC----cCCCCCCCCCCCCC--chHHHHHHHHHHHHhhCCCCccccccc
Q 028617 105 MQKKYGVLLVSQFTLYGIL----KGNKPDFHVAMPPQ--KAKPFYDSLVDKFRKSYNPDAIKGKCA 164 (206)
Q Consensus 105 ~Dv~GeILvVSQFTL~a~~----KGnRPsF~~Aa~pe--~A~~LY~~Fv~~lr~~~~~~~V~~G~F 164 (206)
.-++|..|+||||--.|-+ +-.-|+|...-.-. --.-=.-.|+.-|++..+.-.+++-.|
T Consensus 30 VaVDGK~LLvSQ~PQLGPRk~DPND~tPQFD~dRRiS~R~RHvDLA~lV~V~e~r~p~h~m~n~ay 95 (187)
T 2gia_B 30 VAVDGKLLLISQYPQLGPRKVDPNDLSPQFDADRRISVRLRHVDLAYLVGVCKERVPRHRMETKAY 95 (187)
T ss_dssp EEEETTEEEEEEEEBCSSCCCCTTCCSCSBCGGGCEEEECCHHHHHHHHHHHTTSSSEEEEECSSC
T ss_pred EEecceeeeehhCcccCCCcCCCCcCCccccccceeeEEeeecchhhheeehhccCchhhhcccce
Confidence 4578999999999999853 56788887542111 111112457777776543223455444
No 16
>3bid_A UPF0339 protein NMB1088; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.70A {Neisseria meningitidis MC58} SCOP: d.348.1.1
Probab=31.79 E-value=20 Score=24.96 Aligned_cols=27 Identities=4% Similarity=0.327 Sum_probs=22.6
Q ss_pred cccccCCCCCCcccccccccCCcEEEecc
Q 028617 88 MRLFPNENTGKGWDLNVMQKKYGVLLVSQ 116 (206)
Q Consensus 88 LRIFeDe~gGKkmn~SV~Dv~GeILvVSQ 116 (206)
.-+|.|.+ |+ |--.++.-||+|++-||
T Consensus 3 Fei~~~~~-G~-frfrLka~NGevI~sSe 29 (64)
T 3bid_A 3 FEIYKDAK-GE-YRWRLKAANHEIIAQGE 29 (64)
T ss_dssp EEEEECTT-SC-EEEEEECTTSCEEEECC
T ss_pred EEEEECCC-CC-EEEEEEeCCCCEEEECC
Confidence 34677888 64 88899999999999888
No 17
>2cqu_A Peroxisomal D3,D2-enoyl-COA isomerase; acyl-COA binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=31.25 E-value=34 Score=26.28 Aligned_cols=71 Identities=18% Similarity=0.203 Sum_probs=46.2
Q ss_pred CCHHHHHHHHHHHhccccccCCCCCCcccccccccCCcEEE-eccccccccCcCCCCCCC--------------CCCCCC
Q 028617 73 DTDADADYVCRKVLNMRLFPNENTGKGWDLNVMQKKYGVLL-VSQFTLYGILKGNKPDFH--------------VAMPPQ 137 (206)
Q Consensus 73 Dteed~~~ma~KIlnLRIFeDe~gGKkmn~SV~Dv~GeILv-VSQFTL~a~~KGnRPsF~--------------~Aa~pe 137 (206)
+.+++.+..++.+-++.- +.. |-..+.+ -. ==|.|. |++.+.||++. ..++++
T Consensus 15 ~~~~~F~~A~~~vk~l~~--~p~-----~~~~L~L----YaLyKQAt~-Gd~~~~~Pg~~d~~graKw~AW~~l~gms~e 82 (116)
T 2cqu_A 15 ASQKDFENSMNQVKLLKK--DPG-----NEVKLKL----YALYKQATE-GPCNMPKPGVFDLINKAKWDAWNALGSLPKE 82 (116)
T ss_dssp CCHHHHHHHHHHHHHCCS--CCC-----HHHHHHH----HHHHTTTTT-CSCCSCCCCTTCHHHHHHHHHHHHHCSCCHH
T ss_pred HHHHHHHHHHHHHHHccC--CCC-----HHHHHHH----HHHHHHHhc-CCCCCCCCCcccHHHHHHHHHHHHhcCCCHH
Confidence 457888888888776642 111 1000100 00 116664 77788999874 579999
Q ss_pred chHHHHHHHHHHHHhhCC
Q 028617 138 KAKPFYDSLVDKFRKSYN 155 (206)
Q Consensus 138 ~A~~LY~~Fv~~lr~~~~ 155 (206)
+|...|-..++++...+.
T Consensus 83 eAm~~YI~lv~~l~~~~~ 100 (116)
T 2cqu_A 83 AARQNYVDLVSSLSPSLE 100 (116)
T ss_dssp HHHHHHHHHHHHHCSCCC
T ss_pred HHHHHHHHHHHHHccccc
Confidence 999999999999887664
No 18
>1st7_A ACBP, acyl-COA-binding protein; four helix bundle, transport protein; NMR {Saccharomyces cerevisiae}
Probab=27.33 E-value=27 Score=25.10 Aligned_cols=38 Identities=29% Similarity=0.364 Sum_probs=29.2
Q ss_pred cccccccCcCCCCCCC--------------CCCCCCchHHHHHHHHHHHHhhC
Q 028617 116 QFTLYGILKGNKPDFH--------------VAMPPQKAKPFYDSLVDKFRKSY 154 (206)
Q Consensus 116 QFTL~a~~KGnRPsF~--------------~Aa~pe~A~~LY~~Fv~~lr~~~ 154 (206)
|.|. |++.+.||++. ..|++++|...|-..++++...+
T Consensus 33 QAt~-Gd~~~~~Pg~~d~~~raKw~AW~~l~gms~eeA~~~YI~~v~~l~~~~ 84 (86)
T 1st7_A 33 QATV-GDNDKEKPGIFNMKDRYKWEAWENLKGKSQEDAEKEYIALVDQLIAKY 84 (86)
T ss_dssp HHHH-CSCCCCCCCSSCHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhh-CCCCCCCCCccCHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhhh
Confidence 4443 67788889863 56889999999998888887654
No 19
>3flv_A Acyl-COA-binding domain-containing protein 5; lipid binding, structural genomics, struct genomics consortium, SGC, lipid-binding, membrane; HET: STE COA; 1.70A {Homo sapiens}
Probab=27.20 E-value=34 Score=26.58 Aligned_cols=39 Identities=26% Similarity=0.227 Sum_probs=30.8
Q ss_pred cccccccCcCCCCCCCC--------------CCCCCchHHHHHHHHHHHHhhCC
Q 028617 116 QFTLYGILKGNKPDFHV--------------AMPPQKAKPFYDSLVDKFRKSYN 155 (206)
Q Consensus 116 QFTL~a~~KGnRPsF~~--------------Aa~pe~A~~LY~~Fv~~lr~~~~ 155 (206)
|.|. |++...||+|-. .+++++|...|-..++++...++
T Consensus 60 QAT~-Gd~~~~~Pg~~d~~graKw~AW~~l~gmS~eeAm~~YI~~v~~l~~~~~ 112 (119)
T 3flv_A 60 QATE-GPCKLSRPGFWDPIGRYKWDAWSSLGDMTKEEAMIAYVEEMKKIIETMP 112 (119)
T ss_dssp HHHT-CSCCSCCCCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHSC
T ss_pred HHhc-CCCCCCCCCccCHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhhCC
Confidence 5553 667788898654 58999999999999999987764
No 20
>3fp5_A Acyl-COA binding protein; ACBP, cacao disease, fatty acid metabolism, lipid binding protein; HET: MES; 1.61A {Moniliophthora perniciosa} SCOP: a.11.1.0
Probab=26.68 E-value=29 Score=26.25 Aligned_cols=39 Identities=18% Similarity=0.133 Sum_probs=29.7
Q ss_pred cccccccCcCCCCCCCC--------------CCCCCchHHHHHHHHHHHHhhCC
Q 028617 116 QFTLYGILKGNKPDFHV--------------AMPPQKAKPFYDSLVDKFRKSYN 155 (206)
Q Consensus 116 QFTL~a~~KGnRPsF~~--------------Aa~pe~A~~LY~~Fv~~lr~~~~ 155 (206)
|.|. |++.+.||+|.+ .+++++|...|-..++++...++
T Consensus 40 QAt~-Gd~~~~~Pg~~d~~~raKw~AW~~l~gmS~eeA~~~YI~~v~~l~~~~~ 92 (106)
T 3fp5_A 40 QATV-GDVNISRPGLMDFTGKAKWDAWKSVEGTSKEVAYQKYVEKLLEILKKAD 92 (106)
T ss_dssp HHHT-CSCCSCCCCTTCHHHHHHHHHHHTTTTCCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHhc-CCCCCCCCCccchHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhcccC
Confidence 5553 677788998743 68899999999999988876543
No 21
>2cop_A Acyl-coenzyme A binding domain containing 6; acyl COA binding protein, COA binding protein, lipid binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=25.90 E-value=31 Score=26.06 Aligned_cols=39 Identities=28% Similarity=0.420 Sum_probs=30.6
Q ss_pred cccccccCcCCCCCCC--------------CCCCCCchHHHHHHHHHHHHhhCC
Q 028617 116 QFTLYGILKGNKPDFH--------------VAMPPQKAKPFYDSLVDKFRKSYN 155 (206)
Q Consensus 116 QFTL~a~~KGnRPsF~--------------~Aa~pe~A~~LY~~Fv~~lr~~~~ 155 (206)
|.|. |++.+.||++- ..|++++|...|-..++++...+.
T Consensus 40 QAt~-Gd~~~~~Pg~~d~~~raKw~AW~~l~gms~eeAm~~YI~lv~~l~~~~~ 92 (109)
T 2cop_A 40 QVKV-GNCNTPKPSFFDFEGKQKWEAWKALGDSSPSQAMQEYIAVVKKLDPGWN 92 (109)
T ss_dssp HHHT-CSCCSCCCCSSCHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHCTTCC
T ss_pred Hhhc-CCCCCCCCCccCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhhhc
Confidence 4553 67777888762 568999999999999999987764
No 22
>2yma_A YOS9P, protein OS-9 homolog; carbohydrate binding protein, quality control, endoplasmic reticulum-associated protein degradation; 2.54A {Saccharomyces cerevisiae}
Probab=25.72 E-value=49 Score=27.26 Aligned_cols=59 Identities=19% Similarity=0.206 Sum_probs=42.4
Q ss_pred CeeEEEEEeecCC----CHHHH---HHHHHHHhccccccCCCCCCc--------ccccccccCCcEEEecccccc
Q 028617 61 PGLLVLVGLHEFD----TDADA---DYVCRKVLNMRLFPNENTGKG--------WDLNVMQKKYGVLLVSQFTLY 120 (206)
Q Consensus 61 ~GLlvLVGi~~~D----teed~---~~ma~KIlnLRIFeDe~gGKk--------mn~SV~Dv~GeILvVSQFTL~ 120 (206)
+-.|.|-|=.++| +++-. -...+|++.++++.-++ |+. |...|.|..|+.|.+=+|+|-
T Consensus 34 r~~LMYtgn~~~d~d~~~~~~yk~~g~A~~kml~~~ll~~P~-g~p~~~gD~ftW~adVVD~~G~~lt~l~l~i~ 107 (161)
T 2yma_A 34 RDKLMVTDNAMSNWDEITETYYQKFGNAINKMLSLRLVSLPN-GHILQPGDSCVWLAEVVDMKDRFQTTLSLNIL 107 (161)
T ss_dssp CCEEEECCGGGCCSSSCCHHHHHHHHHHHHHHHHTTCCBCTT-SCBCCTTCEEEEEEEEECTTCCEEEEEEEEEC
T ss_pred hheEEEecccccccchHHHHHHHHHHHHHHHHHHhCcccCCC-CCCCCCCCeEEEEEEEEecCCCEEEEEEEEec
Confidence 3345555544444 23333 34468999999998776 443 788999999999999999996
No 23
>3ofh_A LDLR chaperone MESD; molecular chaperone, protein folding, YWTD propeller; 2.01A {Mus musculus}
Probab=24.41 E-value=85 Score=23.41 Aligned_cols=36 Identities=17% Similarity=0.318 Sum_probs=29.1
Q ss_pred EEECCeeEEEEEeecCCCHHHHHHHHHHHhccccccC
Q 028617 57 SEIGPGLLVLVGLHEFDTDADADYVCRKVLNMRLFPN 93 (206)
Q Consensus 57 g~Ig~GLlvLVGi~~~Dteed~~~ma~KIlnLRIFeD 93 (206)
++=|+.++.+|.+..++|+++.+.+ .++....+|.+
T Consensus 5 sKkgkt~M~FV~v~g~~t~~e~e~i-t~~WqtsL~Nn 40 (89)
T 3ofh_A 5 TKKGKTLMMFVTVSGNPTEKETEEI-TSLWQGSLFNA 40 (89)
T ss_dssp CCCSSCEEEEEEESSCCCHHHHHHH-HHHHHHHHHHT
T ss_pred ccCCCeEEEEEEecCCCCHHHHHHH-HHHHHHHHHhC
Confidence 3458999999999999999999888 55666667754
Done!