Query 028618
Match_columns 206
No_of_seqs 155 out of 1197
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 14:19:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028618.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028618hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0031 CysK Cysteine synthase 100.0 1.9E-53 4E-58 351.1 23.0 197 9-206 2-200 (300)
2 PLN03013 cysteine synthase 100.0 2.5E-53 5.3E-58 367.7 24.7 201 6-206 111-311 (429)
3 PLN02565 cysteine synthase 100.0 7E-53 1.5E-57 356.9 24.7 200 7-206 4-203 (322)
4 PRK11761 cysM cysteine synthas 100.0 2.7E-52 6E-57 349.9 23.3 198 7-206 1-198 (296)
5 PLN02556 cysteine synthase/L-3 100.0 8.4E-52 1.8E-56 355.3 24.1 201 6-206 47-247 (368)
6 PLN00011 cysteine synthase 100.0 4.3E-51 9.3E-56 346.5 25.0 204 3-206 2-205 (323)
7 COG1171 IlvA Threonine dehydra 100.0 6.6E-52 1.4E-56 347.5 17.9 194 6-206 13-206 (347)
8 TIGR01138 cysM cysteine syntha 100.0 7.4E-51 1.6E-55 340.4 23.8 193 12-206 2-194 (290)
9 TIGR01136 cysKM cysteine synth 100.0 1.6E-50 3.6E-55 339.8 24.4 193 13-206 2-194 (299)
10 TIGR01139 cysK cysteine syntha 100.0 6.6E-50 1.4E-54 336.0 24.0 192 13-206 2-194 (298)
11 PRK10717 cysteine synthase A; 100.0 9.9E-50 2.1E-54 339.3 24.4 199 7-206 2-207 (330)
12 PRK07476 eutB threonine dehydr 100.0 8E-50 1.7E-54 338.7 20.1 193 5-206 6-198 (322)
13 PRK08526 threonine dehydratase 100.0 9.7E-50 2.1E-54 346.4 19.9 193 5-206 7-199 (403)
14 PRK08198 threonine dehydratase 100.0 1.8E-49 3.8E-54 346.0 20.9 193 5-206 9-201 (404)
15 PLN02970 serine racemase 100.0 3.9E-49 8.4E-54 335.2 21.8 190 8-206 17-206 (328)
16 PRK12483 threonine dehydratase 100.0 4.1E-49 9E-54 350.2 22.0 188 11-206 30-217 (521)
17 PLN02356 phosphateglycerate ki 100.0 1.2E-48 2.7E-53 338.2 23.7 198 8-206 43-281 (423)
18 PRK06382 threonine dehydratase 100.0 5.8E-49 1.3E-53 342.6 20.7 191 7-206 14-204 (406)
19 TIGR02991 ectoine_eutB ectoine 100.0 1E-48 2.2E-53 331.2 21.4 194 4-206 5-198 (317)
20 cd01561 CBS_like CBS_like: Thi 100.0 5.1E-48 1.1E-52 323.5 24.0 189 17-206 1-191 (291)
21 TIGR01137 cysta_beta cystathio 100.0 2.8E-48 6E-53 343.0 22.7 197 9-206 2-201 (454)
22 PRK07048 serine/threonine dehy 100.0 1.8E-48 3.9E-53 330.4 20.0 193 5-206 11-203 (321)
23 PRK06110 hypothetical protein; 100.0 2.3E-48 5E-53 329.8 20.5 192 6-206 9-200 (322)
24 PRK08638 threonine dehydratase 100.0 2.2E-48 4.8E-53 330.8 20.4 192 6-206 15-206 (333)
25 cd06447 D-Ser-dehyd D-Serine d 100.0 2.7E-48 6E-53 335.8 21.2 188 16-206 50-276 (404)
26 PLN02550 threonine dehydratase 100.0 3.2E-48 6.9E-53 346.8 21.5 188 11-206 102-289 (591)
27 KOG1252 Cystathionine beta-syn 100.0 7.4E-49 1.6E-53 323.3 15.5 203 4-206 38-243 (362)
28 TIGR01124 ilvA_2Cterm threonin 100.0 8.9E-48 1.9E-52 341.4 22.0 189 10-206 9-197 (499)
29 KOG1250 Threonine/serine dehyd 100.0 3E-48 6.6E-53 324.6 17.7 192 7-206 55-246 (457)
30 PRK08639 threonine dehydratase 100.0 3.1E-48 6.7E-53 339.3 18.5 192 7-206 14-210 (420)
31 PRK06608 threonine dehydratase 100.0 8.3E-48 1.8E-52 327.9 20.4 193 5-206 10-202 (338)
32 TIGR02079 THD1 threonine dehyd 100.0 6.9E-48 1.5E-52 335.8 20.0 193 6-206 4-199 (409)
33 TIGR01127 ilvA_1Cterm threonin 100.0 9.7E-48 2.1E-52 332.7 20.4 179 19-206 1-179 (380)
34 cd01562 Thr-dehyd Threonine de 100.0 1E-47 2.2E-52 323.3 19.7 194 4-206 3-196 (304)
35 PRK09224 threonine dehydratase 100.0 2.5E-47 5.4E-52 339.5 22.0 189 10-206 12-200 (504)
36 PRK06815 hypothetical protein; 100.0 1.8E-47 3.8E-52 323.7 19.6 194 4-206 6-199 (317)
37 PRK06381 threonine synthase; V 100.0 5.1E-47 1.1E-51 321.3 22.3 186 13-206 10-203 (319)
38 PRK07334 threonine dehydratase 100.0 1.5E-47 3.3E-52 333.5 19.4 192 6-206 11-202 (403)
39 PRK02991 D-serine dehydratase; 100.0 6.2E-47 1.4E-51 330.9 22.0 188 16-206 73-299 (441)
40 cd06448 L-Ser-dehyd Serine deh 100.0 4.4E-47 9.6E-52 321.0 20.4 185 18-206 1-188 (316)
41 PRK08813 threonine dehydratase 100.0 1.1E-46 2.4E-51 320.6 21.6 183 5-206 26-208 (349)
42 TIGR02035 D_Ser_am_lyase D-ser 100.0 2E-46 4.3E-51 326.6 22.3 189 15-206 67-294 (431)
43 PRK08246 threonine dehydratase 100.0 2.4E-46 5.2E-51 315.8 20.7 187 5-206 10-196 (310)
44 PRK06352 threonine synthase; V 100.0 1.9E-46 4.1E-51 321.2 19.6 186 11-206 21-212 (351)
45 PRK08197 threonine synthase; V 100.0 4.8E-46 1E-50 323.3 20.5 186 12-206 73-267 (394)
46 cd01563 Thr-synth_1 Threonine 100.0 5.7E-46 1.2E-50 315.4 19.9 187 10-206 14-208 (324)
47 PRK07591 threonine synthase; V 100.0 9E-46 1.9E-50 323.6 21.2 187 12-206 83-278 (421)
48 cd00640 Trp-synth-beta_II Tryp 100.0 4.7E-45 1E-49 298.3 23.2 183 19-206 1-184 (244)
49 PRK07409 threonine synthase; V 100.0 3.7E-45 8E-50 313.7 20.7 180 12-201 25-205 (353)
50 PRK05638 threonine synthase; V 100.0 5.1E-45 1.1E-49 320.9 20.9 178 12-201 60-237 (442)
51 PRK06260 threonine synthase; V 100.0 5.8E-45 1.3E-49 316.8 19.9 180 11-200 60-242 (397)
52 PRK06721 threonine synthase; R 100.0 1.3E-44 2.9E-49 309.9 21.6 186 11-206 21-212 (352)
53 PRK06450 threonine synthase; V 100.0 1.7E-44 3.8E-49 307.2 21.3 170 11-201 51-221 (338)
54 PRK08206 diaminopropionate amm 100.0 6.6E-44 1.4E-48 309.8 20.1 195 8-206 32-260 (399)
55 PLN02569 threonine synthase 100.0 1.3E-43 2.8E-48 313.1 22.2 184 12-200 127-314 (484)
56 KOG1251 Serine racemase [Signa 100.0 2.4E-44 5.3E-49 284.9 15.5 192 6-206 13-204 (323)
57 PRK08329 threonine synthase; V 100.0 1.4E-43 3.1E-48 303.1 21.5 172 12-200 58-229 (347)
58 TIGR01747 diampropi_NH3ly diam 100.0 6.2E-42 1.3E-46 295.0 20.9 194 8-206 13-239 (376)
59 KOG1481 Cysteine synthase [Ami 100.0 1.3E-42 2.9E-47 279.7 14.7 198 7-205 38-244 (391)
60 TIGR00260 thrC threonine synth 100.0 4.8E-42 1E-46 291.8 17.7 179 11-199 16-199 (328)
61 TIGR01275 ACC_deam_rel pyridox 100.0 1.8E-41 4E-46 286.3 19.5 185 15-206 4-200 (311)
62 TIGR03528 2_3_DAP_am_ly diamin 100.0 2.5E-41 5.5E-46 293.0 20.3 190 14-206 37-258 (396)
63 PRK03910 D-cysteine desulfhydr 100.0 1.2E-40 2.5E-45 283.7 19.6 192 9-206 6-214 (331)
64 PF00291 PALP: Pyridoxal-phosp 100.0 1.5E-40 3.3E-45 279.2 19.3 183 12-206 1-196 (306)
65 TIGR00263 trpB tryptophan synt 100.0 2.6E-40 5.6E-45 286.2 21.2 190 12-206 43-248 (385)
66 PRK13028 tryptophan synthase s 100.0 4.2E-40 9.1E-45 284.7 22.0 190 12-206 55-260 (402)
67 PRK04346 tryptophan synthase s 100.0 3.8E-40 8.2E-45 284.6 21.5 190 12-206 51-256 (397)
68 PRK13802 bifunctional indole-3 100.0 8.8E-40 1.9E-44 297.1 22.6 190 12-206 319-530 (695)
69 PRK14045 1-aminocyclopropane-1 100.0 3.5E-40 7.5E-45 280.5 18.2 195 6-206 9-215 (329)
70 TIGR01415 trpB_rel pyridoxal-p 100.0 1.4E-39 3.1E-44 283.4 22.3 185 13-206 62-279 (419)
71 PLN02618 tryptophan synthase, 100.0 1.1E-39 2.4E-44 282.2 21.2 192 10-206 57-269 (410)
72 PRK12390 1-aminocyclopropane-1 100.0 8.5E-40 1.8E-44 279.0 19.6 195 7-206 4-220 (337)
73 PRK12391 tryptophan synthase s 100.0 2E-39 4.4E-44 282.8 22.3 189 12-206 71-288 (427)
74 cd06449 ACCD Aminocyclopropane 100.0 7.7E-40 1.7E-44 276.0 18.8 182 19-206 1-205 (307)
75 cd06446 Trp-synth_B Tryptophan 100.0 2.6E-39 5.7E-44 278.5 20.7 191 11-206 26-232 (365)
76 TIGR01274 ACC_deam 1-aminocycl 100.0 3.4E-39 7.4E-44 275.2 20.7 193 8-206 4-219 (337)
77 TIGR03844 cysteate_syn cysteat 100.0 3.2E-39 6.9E-44 279.9 17.7 175 15-198 59-241 (398)
78 PRK13803 bifunctional phosphor 100.0 1.1E-37 2.4E-42 282.8 20.1 190 12-206 264-468 (610)
79 COG0498 ThrC Threonine synthas 100.0 2.1E-33 4.5E-38 242.2 18.4 184 12-204 70-258 (411)
80 COG2515 Acd 1-aminocyclopropan 100.0 2.3E-27 4.9E-32 193.9 15.3 195 6-206 3-211 (323)
81 COG0133 TrpB Tryptophan syntha 99.9 4.7E-26 1E-30 186.9 15.3 190 12-206 49-253 (396)
82 cd01560 Thr-synth_2 Threonine 99.9 3.5E-23 7.7E-28 182.2 19.7 169 19-201 88-273 (460)
83 PRK09225 threonine synthase; V 99.9 2.6E-23 5.5E-28 183.0 18.3 165 18-198 88-268 (462)
84 COG1350 Predicted alternative 99.9 7.3E-24 1.6E-28 174.6 13.0 181 12-197 71-276 (432)
85 KOG1395 Tryptophan synthase be 99.9 3.7E-23 7.9E-28 171.8 12.1 183 12-198 115-314 (477)
86 COG3048 DsdA D-serine dehydrat 99.9 1.2E-20 2.7E-25 154.4 13.5 190 13-205 73-301 (443)
87 PF03808 Glyco_tran_WecB: Glyc 95.0 0.27 5.9E-06 38.0 9.0 99 82-187 13-113 (172)
88 cd06533 Glyco_transf_WecG_TagA 93.7 0.94 2E-05 34.9 9.6 99 82-187 11-111 (171)
89 PF00107 ADH_zinc_N: Zinc-bind 91.8 1.3 2.7E-05 31.8 7.6 41 82-125 3-43 (130)
90 cd08230 glucose_DH Glucose deh 91.7 1.4 3.1E-05 37.5 9.0 54 66-120 170-223 (355)
91 PF07279 DUF1442: Protein of u 91.6 3.5 7.6E-05 33.1 10.2 55 60-117 35-94 (218)
92 TIGR00696 wecB_tagA_cpsF bacte 91.5 2.5 5.4E-05 32.9 9.3 95 82-186 13-111 (177)
93 TIGR03201 dearomat_had 6-hydro 90.9 3.9 8.4E-05 34.8 10.8 57 62-122 160-216 (349)
94 PF05368 NmrA: NmrA-like famil 90.8 1.4 3.1E-05 35.1 7.7 52 73-125 2-53 (233)
95 PF00764 Arginosuc_synth: Argi 90.8 2.6 5.6E-05 37.0 9.6 125 74-206 2-137 (388)
96 cd08294 leukotriene_B4_DH_like 90.2 4.7 0.0001 33.5 10.6 59 62-123 137-195 (329)
97 COG0604 Qor NADPH:quinone redu 89.9 5.2 0.00011 34.1 10.7 57 63-122 137-193 (326)
98 PRK03659 glutathione-regulated 89.3 7.5 0.00016 36.1 11.9 52 71-125 401-452 (601)
99 KOG0025 Zn2+-binding dehydroge 89.0 2.4 5.2E-05 35.8 7.6 89 34-125 124-218 (354)
100 TIGR02819 fdhA_non_GSH formald 88.8 7.7 0.00017 33.9 11.2 57 62-121 179-235 (393)
101 PRK03562 glutathione-regulated 88.6 8.9 0.00019 35.8 11.9 52 71-125 401-452 (621)
102 TIGR03366 HpnZ_proposed putati 88.3 4.3 9.4E-05 33.4 8.9 53 66-121 118-170 (280)
103 PRK08862 short chain dehydroge 88.1 10 0.00022 30.2 10.8 54 70-123 6-60 (227)
104 KOG0023 Alcohol dehydrogenase, 87.6 5.3 0.00012 34.2 8.8 61 60-124 174-234 (360)
105 PRK09424 pntA NAD(P) transhydr 87.5 9 0.0002 34.9 10.9 50 71-123 166-215 (509)
106 PRK08703 short chain dehydroge 87.0 9.7 0.00021 30.2 10.0 32 70-101 7-38 (239)
107 TIGR00670 asp_carb_tr aspartat 86.9 4.2 9.1E-05 34.4 8.0 46 79-124 162-209 (301)
108 cd01075 NAD_bind_Leu_Phe_Val_D 86.7 8.9 0.00019 30.3 9.4 68 50-120 6-76 (200)
109 cd08274 MDR9 Medium chain dehy 86.7 8 0.00017 32.5 9.9 57 61-121 170-226 (350)
110 TIGR02825 B4_12hDH leukotriene 86.7 6.8 0.00015 32.7 9.4 58 62-122 132-189 (325)
111 PRK12823 benD 1,6-dihydroxycyc 86.5 6 0.00013 31.8 8.6 56 70-125 9-64 (260)
112 PF01041 DegT_DnrJ_EryC1: DegT 86.2 2 4.3E-05 37.0 5.9 94 71-165 41-136 (363)
113 KOG1201 Hydroxysteroid 17-beta 86.2 11 0.00023 31.9 9.9 74 69-143 38-113 (300)
114 PRK08628 short chain dehydroge 86.0 8 0.00017 31.0 9.1 56 70-125 8-63 (258)
115 PRK06935 2-deoxy-D-gluconate 3 85.9 7.5 0.00016 31.2 8.9 56 70-125 16-71 (258)
116 cd08295 double_bond_reductase_ 85.8 12 0.00025 31.6 10.4 57 62-121 145-202 (338)
117 PRK13656 trans-2-enoyl-CoA red 85.7 19 0.00042 31.7 11.6 57 41-100 14-73 (398)
118 TIGR02822 adh_fam_2 zinc-bindi 85.0 5.3 0.00012 33.8 7.9 57 61-121 158-214 (329)
119 PRK12481 2-deoxy-D-gluconate 3 84.9 9.3 0.0002 30.7 9.0 55 70-125 9-63 (251)
120 PRK08589 short chain dehydroge 84.9 7 0.00015 31.9 8.3 56 70-125 7-62 (272)
121 cd08281 liver_ADH_like1 Zinc-d 84.8 13 0.00028 31.9 10.3 58 62-122 185-242 (371)
122 PRK05993 short chain dehydroge 84.7 15 0.00032 30.0 10.3 53 70-125 5-57 (277)
123 PRK06182 short chain dehydroge 84.5 17 0.00037 29.4 10.5 53 70-125 4-56 (273)
124 cd08293 PTGR2 Prostaglandin re 84.5 16 0.00034 30.7 10.6 58 63-123 147-208 (345)
125 PLN03154 putative allyl alcoho 84.4 19 0.0004 30.7 11.0 58 62-122 152-210 (348)
126 PRK13394 3-hydroxybutyrate deh 84.4 10 0.00022 30.4 9.0 56 70-125 8-64 (262)
127 TIGR01832 kduD 2-deoxy-D-gluco 84.3 11 0.00023 30.0 9.1 55 70-125 6-60 (248)
128 TIGR03451 mycoS_dep_FDH mycoth 84.3 14 0.0003 31.5 10.2 57 62-121 170-226 (358)
129 PRK08340 glucose-1-dehydrogena 84.2 15 0.00032 29.5 10.0 31 71-101 2-32 (259)
130 cd08233 butanediol_DH_like (2R 84.2 18 0.0004 30.5 10.9 58 62-122 166-223 (351)
131 cd08256 Zn_ADH2 Alcohol dehydr 84.1 19 0.00042 30.3 11.0 59 62-123 168-226 (350)
132 PRK12743 oxidoreductase; Provi 84.0 7.5 0.00016 31.3 8.1 55 71-125 4-60 (256)
133 PF00106 adh_short: short chai 83.9 9.7 0.00021 28.1 8.2 56 71-126 2-61 (167)
134 PRK07062 short chain dehydroge 83.7 19 0.00042 28.9 10.5 33 70-102 9-41 (265)
135 PRK08226 short chain dehydroge 83.5 9.5 0.00021 30.6 8.6 56 70-125 7-62 (263)
136 PRK06139 short chain dehydroge 83.5 7.1 0.00015 33.2 8.0 56 70-125 8-64 (330)
137 PRK07109 short chain dehydroge 83.4 7.9 0.00017 32.9 8.3 56 70-125 9-65 (334)
138 PRK08993 2-deoxy-D-gluconate 3 83.4 15 0.00033 29.4 9.7 55 70-125 11-65 (253)
139 PRK05854 short chain dehydroge 83.4 17 0.00036 30.5 10.2 33 70-102 15-47 (313)
140 cd08289 MDR_yhfp_like Yhfp put 83.1 13 0.00027 30.9 9.3 50 69-121 147-196 (326)
141 PRK06114 short chain dehydroge 82.8 16 0.00034 29.3 9.5 56 70-125 9-66 (254)
142 PF00070 Pyr_redox: Pyridine n 82.7 8.8 0.00019 25.1 6.7 49 73-121 2-59 (80)
143 cd08292 ETR_like_2 2-enoyl thi 82.7 15 0.00033 30.3 9.6 56 62-120 133-188 (324)
144 COG2130 Putative NADP-dependen 82.6 13 0.00029 31.6 8.9 59 61-122 143-202 (340)
145 cd08297 CAD3 Cinnamyl alcohol 82.6 18 0.00038 30.3 10.1 54 65-121 162-215 (341)
146 PRK06720 hypothetical protein; 82.5 20 0.00042 27.4 11.3 32 70-101 17-48 (169)
147 PRK09880 L-idonate 5-dehydroge 82.5 14 0.00031 31.2 9.6 54 66-122 167-220 (343)
148 cd08296 CAD_like Cinnamyl alco 82.5 18 0.0004 30.3 10.2 53 65-121 160-212 (333)
149 COG0800 Eda 2-keto-3-deoxy-6-p 82.5 24 0.00051 28.3 11.6 122 53-187 27-163 (211)
150 KOG2862 Alanine-glyoxylate ami 82.4 25 0.00053 30.2 10.4 85 71-155 69-155 (385)
151 TIGR01751 crot-CoA-red crotony 82.1 11 0.00024 32.7 8.8 56 64-122 185-240 (398)
152 PRK12937 short chain dehydroge 81.9 16 0.00034 28.9 9.2 56 70-125 6-63 (245)
153 PF00185 OTCace: Aspartate/orn 81.7 7.2 0.00016 29.6 6.7 46 78-123 12-65 (158)
154 cd08239 THR_DH_like L-threonin 81.5 30 0.00066 28.9 12.1 57 62-122 157-214 (339)
155 PF09837 DUF2064: Uncharacteri 81.3 18 0.00039 26.2 10.0 97 85-187 2-99 (122)
156 PRK12828 short chain dehydroge 81.2 19 0.00042 28.1 9.4 56 70-125 8-64 (239)
157 PRK14030 glutamate dehydrogena 81.2 11 0.00025 33.7 8.6 60 49-108 207-274 (445)
158 COG2085 Predicted dinucleotide 81.2 27 0.00058 28.1 10.0 77 72-150 3-92 (211)
159 PF13561 adh_short_C2: Enoyl-( 81.0 8.3 0.00018 30.7 7.2 49 77-125 4-54 (241)
160 PRK07523 gluconate 5-dehydroge 81.0 13 0.00029 29.7 8.5 56 70-125 11-67 (255)
161 PRK05557 fabG 3-ketoacyl-(acyl 80.9 18 0.00039 28.4 9.1 56 70-125 6-63 (248)
162 cd08287 FDH_like_ADH3 formalde 80.7 28 0.0006 29.2 10.7 56 63-121 163-218 (345)
163 PRK05786 fabG 3-ketoacyl-(acyl 80.7 13 0.00029 29.2 8.3 34 70-103 6-39 (238)
164 COG1064 AdhP Zn-dependent alco 80.6 12 0.00025 32.3 8.2 61 60-124 158-218 (339)
165 PF01210 NAD_Gly3P_dh_N: NAD-d 80.5 3.9 8.6E-05 30.8 4.9 41 73-116 2-42 (157)
166 PRK07097 gluconate 5-dehydroge 80.1 15 0.00032 29.7 8.5 56 70-125 11-67 (265)
167 PRK08063 enoyl-(acyl carrier p 80.1 21 0.00045 28.3 9.3 56 70-125 5-62 (250)
168 PRK08277 D-mannonate oxidoredu 80.1 16 0.00034 29.7 8.7 56 70-125 11-67 (278)
169 PRK07792 fabG 3-ketoacyl-(acyl 80.0 16 0.00034 30.5 8.9 56 70-125 13-70 (306)
170 PRK10754 quinone oxidoreductas 79.8 32 0.00069 28.5 10.7 56 62-120 134-189 (327)
171 cd08288 MDR_yhdh Yhdh putative 79.8 17 0.00038 30.0 9.1 51 68-121 146-196 (324)
172 PRK08643 acetoin reductase; Va 79.6 20 0.00043 28.6 9.1 56 70-125 3-59 (256)
173 PRK06172 short chain dehydroge 79.6 16 0.00036 29.1 8.6 56 70-125 8-64 (253)
174 PRK05396 tdh L-threonine 3-deh 79.5 15 0.00032 30.9 8.6 52 67-121 162-213 (341)
175 TIGR01064 pyruv_kin pyruvate k 79.4 48 0.001 30.0 12.5 117 84-206 261-400 (473)
176 PRK12779 putative bifunctional 79.4 6.1 0.00013 38.8 6.8 31 70-100 306-336 (944)
177 PRK12939 short chain dehydroge 79.3 17 0.00037 28.7 8.5 56 70-125 8-64 (250)
178 PRK06128 oxidoreductase; Provi 79.2 26 0.00057 29.0 9.9 56 70-125 56-114 (300)
179 PRK08278 short chain dehydroge 78.9 24 0.00052 28.8 9.4 56 70-125 7-70 (273)
180 cd08284 FDH_like_2 Glutathione 78.8 37 0.00081 28.3 11.2 53 64-119 163-215 (344)
181 PF02826 2-Hacid_dh_C: D-isome 78.7 14 0.0003 28.4 7.5 104 71-197 37-142 (178)
182 PRK12935 acetoacetyl-CoA reduc 78.7 18 0.00039 28.7 8.5 57 70-126 7-65 (247)
183 PRK05447 1-deoxy-D-xylulose 5- 78.6 46 0.00099 29.3 12.4 110 71-198 3-114 (385)
184 PRK05653 fabG 3-ketoacyl-(acyl 78.6 23 0.00049 27.8 9.0 56 70-125 6-62 (246)
185 PRK07666 fabG 3-ketoacyl-(acyl 78.5 21 0.00045 28.2 8.8 55 71-125 9-64 (239)
186 COG0300 DltE Short-chain dehyd 78.4 21 0.00045 29.7 8.8 57 70-126 7-65 (265)
187 COG1751 Uncharacterized conser 78.3 22 0.00048 27.1 8.0 75 44-123 7-90 (186)
188 PRK06197 short chain dehydroge 78.3 37 0.00081 28.1 10.7 33 70-102 17-49 (306)
189 PRK08261 fabG 3-ketoacyl-(acyl 78.2 28 0.00062 30.7 10.3 57 69-125 210-266 (450)
190 PRK07806 short chain dehydroge 78.1 26 0.00056 27.7 9.3 56 70-125 7-64 (248)
191 PRK07478 short chain dehydroge 78.1 18 0.0004 28.8 8.4 72 70-141 7-80 (254)
192 PRK10309 galactitol-1-phosphat 77.9 17 0.00037 30.7 8.5 57 62-121 154-210 (347)
193 COG1063 Tdh Threonine dehydrog 77.9 44 0.00096 28.7 13.0 52 72-125 171-223 (350)
194 TIGR02818 adh_III_F_hyde S-(hy 77.8 20 0.00043 30.8 8.9 57 62-121 179-235 (368)
195 cd08246 crotonyl_coA_red croto 77.7 11 0.00023 32.6 7.3 55 64-121 189-243 (393)
196 PRK05876 short chain dehydroge 77.6 22 0.00047 29.2 8.8 56 70-125 7-63 (275)
197 PRK08303 short chain dehydroge 77.6 22 0.00048 29.8 9.0 72 70-141 9-92 (305)
198 cd08242 MDR_like Medium chain 77.5 21 0.00046 29.5 8.9 57 61-121 148-204 (319)
199 COG0623 FabI Enoyl-[acyl-carri 77.5 15 0.00032 30.1 7.3 69 109-184 25-93 (259)
200 cd08301 alcohol_DH_plants Plan 77.3 19 0.00042 30.7 8.8 56 62-121 181-237 (369)
201 PLN02740 Alcohol dehydrogenase 77.3 46 0.001 28.6 11.8 56 62-121 192-248 (381)
202 PRK09134 short chain dehydroge 77.2 28 0.00061 27.8 9.3 56 70-125 10-67 (258)
203 PRK06194 hypothetical protein; 77.2 26 0.00057 28.5 9.3 56 70-125 7-63 (287)
204 PRK12744 short chain dehydroge 77.1 21 0.00046 28.6 8.6 56 70-125 9-69 (257)
205 cd08291 ETR_like_1 2-enoyl thi 77.0 30 0.00065 28.8 9.7 51 71-124 145-196 (324)
206 PRK12745 3-ketoacyl-(acyl-carr 76.9 26 0.00056 27.8 9.0 55 71-125 4-60 (256)
207 cd08300 alcohol_DH_class_III c 76.9 17 0.00037 31.1 8.3 57 62-121 180-236 (368)
208 COG0078 ArgF Ornithine carbamo 76.9 14 0.0003 31.3 7.3 56 70-125 154-215 (310)
209 PRK07890 short chain dehydroge 76.7 23 0.0005 28.2 8.7 56 70-125 6-62 (258)
210 cd08277 liver_alcohol_DH_like 76.7 19 0.00042 30.7 8.6 56 62-121 178-234 (365)
211 PRK05866 short chain dehydroge 76.7 19 0.00041 29.9 8.3 55 71-125 42-97 (293)
212 PRK12826 3-ketoacyl-(acyl-carr 76.6 24 0.00051 27.9 8.6 56 70-125 7-63 (251)
213 PRK06124 gluconate 5-dehydroge 76.6 21 0.00045 28.5 8.3 56 70-125 12-68 (256)
214 PRK06949 short chain dehydroge 76.5 17 0.00036 29.0 7.8 33 70-102 10-42 (258)
215 PRK07454 short chain dehydroge 76.4 19 0.00042 28.4 8.1 55 71-125 8-63 (241)
216 PRK08217 fabG 3-ketoacyl-(acyl 76.4 23 0.0005 28.0 8.5 56 70-125 6-62 (253)
217 PRK06483 dihydromonapterin red 76.4 35 0.00077 26.8 9.9 53 71-125 4-56 (236)
218 PRK12938 acetyacetyl-CoA reduc 76.2 21 0.00045 28.3 8.2 56 70-125 4-61 (246)
219 PRK06181 short chain dehydroge 76.0 22 0.00047 28.5 8.4 55 71-125 3-58 (263)
220 KOG0024 Sorbitol dehydrogenase 76.0 39 0.00086 29.1 9.8 64 59-125 160-223 (354)
221 cd08243 quinone_oxidoreductase 75.9 26 0.00057 28.6 9.0 55 64-121 138-192 (320)
222 cd00401 AdoHcyase S-adenosyl-L 75.7 13 0.00027 33.1 7.2 53 64-120 197-249 (413)
223 PRK05867 short chain dehydroge 75.7 23 0.0005 28.3 8.4 56 70-125 10-66 (253)
224 PRK06701 short chain dehydroge 75.6 31 0.00066 28.5 9.3 56 70-125 47-104 (290)
225 PRK07231 fabG 3-ketoacyl-(acyl 75.6 32 0.0007 27.1 9.2 55 70-125 6-61 (251)
226 PRK08017 oxidoreductase; Provi 75.5 34 0.00074 27.2 9.3 52 71-125 4-55 (256)
227 PRK08936 glucose-1-dehydrogena 75.5 33 0.00072 27.5 9.3 56 70-125 8-65 (261)
228 PRK07035 short chain dehydroge 75.4 25 0.00055 27.9 8.6 55 70-124 9-64 (252)
229 PRK06500 short chain dehydroge 75.3 32 0.0007 27.1 9.1 54 70-125 7-60 (249)
230 PRK03692 putative UDP-N-acetyl 75.2 32 0.00069 28.2 9.0 92 83-186 70-168 (243)
231 PRK08085 gluconate 5-dehydroge 75.1 29 0.00063 27.7 8.8 56 70-125 10-66 (254)
232 PRK12429 3-hydroxybutyrate deh 75.1 27 0.00058 27.7 8.6 56 70-125 5-61 (258)
233 PTZ00079 NADP-specific glutama 74.9 23 0.0005 31.8 8.6 54 49-102 216-269 (454)
234 TIGR00692 tdh L-threonine 3-de 74.8 28 0.00062 29.2 9.1 53 66-121 159-211 (340)
235 PRK08265 short chain dehydroge 74.7 33 0.00072 27.6 9.1 54 70-125 7-60 (261)
236 PRK07832 short chain dehydroge 74.7 44 0.00095 27.0 10.4 31 71-101 2-32 (272)
237 PRK06079 enoyl-(acyl carrier p 74.7 25 0.00055 28.2 8.4 32 70-101 8-41 (252)
238 cd08285 NADP_ADH NADP(H)-depen 74.6 51 0.0011 27.8 13.6 58 62-122 160-217 (351)
239 PRK06841 short chain dehydroge 74.5 34 0.00073 27.2 9.1 33 70-102 16-48 (255)
240 PRK08213 gluconate 5-dehydroge 74.5 26 0.00057 28.0 8.5 56 70-125 13-69 (259)
241 TIGR03206 benzo_BadH 2-hydroxy 74.2 28 0.0006 27.5 8.5 56 70-125 4-60 (250)
242 PTZ00354 alcohol dehydrogenase 74.1 49 0.0011 27.3 11.4 56 64-122 136-191 (334)
243 PRK07791 short chain dehydroge 74.0 32 0.0007 28.3 9.0 72 70-141 7-89 (286)
244 PRK05693 short chain dehydroge 73.9 46 0.00099 26.9 10.3 52 71-125 3-54 (274)
245 cd08298 CAD2 Cinnamyl alcohol 73.9 24 0.00052 29.3 8.3 55 62-120 161-215 (329)
246 PF13460 NAD_binding_10: NADH( 73.9 12 0.00025 28.3 5.9 33 73-105 2-34 (183)
247 KOG1205 Predicted dehydrogenas 73.6 41 0.0009 28.2 9.4 56 70-125 13-71 (282)
248 cd05282 ETR_like 2-enoyl thioe 73.6 36 0.00077 28.0 9.2 55 63-120 133-187 (323)
249 cd05313 NAD_bind_2_Glu_DH NAD( 73.5 20 0.00043 29.6 7.4 53 49-101 17-69 (254)
250 PRK02610 histidinol-phosphate 73.4 26 0.00057 30.1 8.6 54 72-125 93-146 (374)
251 PRK07814 short chain dehydroge 73.4 30 0.00064 27.9 8.5 55 70-124 11-66 (263)
252 PRK07904 short chain dehydroge 73.4 34 0.00074 27.5 8.9 54 70-123 9-66 (253)
253 PRK06077 fabG 3-ketoacyl-(acyl 73.3 26 0.00056 27.7 8.1 56 70-125 7-64 (252)
254 TIGR01963 PHB_DH 3-hydroxybuty 73.3 28 0.00061 27.5 8.3 55 71-125 3-58 (255)
255 PRK07677 short chain dehydroge 73.3 32 0.0007 27.4 8.7 56 70-125 2-58 (252)
256 cd05286 QOR2 Quinone oxidoredu 73.2 48 0.001 26.8 10.6 57 63-122 131-187 (320)
257 PF04127 DFP: DNA / pantothena 73.1 25 0.00054 27.5 7.6 62 72-142 22-83 (185)
258 PRK06138 short chain dehydroge 73.0 34 0.00075 27.0 8.8 55 70-125 6-61 (252)
259 PRK05717 oxidoreductase; Valid 72.9 39 0.00083 27.0 9.0 54 70-125 11-64 (255)
260 cd08231 MDR_TM0436_like Hypoth 72.8 57 0.0012 27.6 12.6 54 64-121 173-227 (361)
261 PRK06463 fabG 3-ketoacyl-(acyl 72.6 47 0.001 26.5 10.5 54 70-125 8-61 (255)
262 PRK08306 dipicolinate synthase 72.6 40 0.00087 28.3 9.3 47 71-120 153-199 (296)
263 cd05211 NAD_bind_Glu_Leu_Phe_V 72.6 21 0.00045 28.7 7.2 53 51-103 4-56 (217)
264 cd08267 MDR1 Medium chain dehy 72.3 31 0.00067 28.1 8.5 52 64-119 139-190 (319)
265 PRK06947 glucose-1-dehydrogena 72.2 26 0.00056 27.8 7.8 55 71-125 4-60 (248)
266 TIGR02415 23BDH acetoin reduct 72.1 35 0.00076 27.0 8.6 55 71-125 2-57 (254)
267 cd05288 PGDH Prostaglandin deh 72.1 55 0.0012 27.0 10.4 56 63-121 140-196 (329)
268 PRK06101 short chain dehydroge 72.1 35 0.00076 27.0 8.6 51 71-124 3-55 (240)
269 cd08244 MDR_enoyl_red Possible 72.0 54 0.0012 26.9 10.8 57 61-120 135-191 (324)
270 PRK12771 putative glutamate sy 72.0 8.2 0.00018 35.4 5.4 55 67-122 135-207 (564)
271 cd08250 Mgc45594_like Mgc45594 72.0 55 0.0012 27.0 10.8 56 63-121 134-189 (329)
272 PRK07326 short chain dehydroge 72.0 45 0.00099 26.0 9.2 32 70-101 7-38 (237)
273 cd08245 CAD Cinnamyl alcohol d 71.9 29 0.00063 28.8 8.4 56 63-122 157-212 (330)
274 TIGR02824 quinone_pig3 putativ 71.9 52 0.0011 26.7 10.7 58 61-121 132-189 (325)
275 PRK06198 short chain dehydroge 71.8 48 0.001 26.4 9.4 56 70-125 7-64 (260)
276 PRK07774 short chain dehydroge 71.7 39 0.00085 26.7 8.8 56 70-125 7-63 (250)
277 PRK08594 enoyl-(acyl carrier p 71.7 47 0.001 26.8 9.4 55 70-124 8-66 (257)
278 PRK10083 putative oxidoreducta 71.6 51 0.0011 27.5 9.9 58 61-121 153-211 (339)
279 PF08659 KR: KR domain; Inter 71.6 26 0.00057 26.8 7.4 68 71-138 2-74 (181)
280 PRK08177 short chain dehydroge 71.4 47 0.001 25.9 9.3 33 71-103 3-35 (225)
281 TIGR03325 BphB_TodD cis-2,3-di 71.3 42 0.0009 27.0 8.9 53 70-125 6-59 (262)
282 PRK07985 oxidoreductase; Provi 71.2 37 0.00081 28.0 8.8 56 70-125 50-108 (294)
283 PRK08264 short chain dehydroge 71.2 23 0.0005 27.8 7.3 33 70-102 7-40 (238)
284 PRK06953 short chain dehydroge 71.1 47 0.001 25.9 9.8 52 71-125 3-54 (222)
285 PRK06113 7-alpha-hydroxysteroi 71.1 34 0.00074 27.3 8.4 56 70-125 12-68 (255)
286 cd08264 Zn_ADH_like2 Alcohol d 71.0 29 0.00063 28.7 8.2 39 62-100 156-194 (325)
287 PLN02827 Alcohol dehydrogenase 71.0 39 0.00084 29.1 9.1 57 62-121 187-243 (378)
288 COG0399 WecE Predicted pyridox 70.9 41 0.00089 29.5 9.1 95 71-166 50-146 (374)
289 PRK05370 argininosuccinate syn 70.8 80 0.0017 28.4 12.6 131 68-206 10-154 (447)
290 PRK07550 hypothetical protein; 70.8 68 0.0015 27.5 11.0 77 45-125 67-144 (386)
291 PRK10538 malonic semialdehyde 70.6 43 0.00093 26.6 8.8 52 71-125 2-54 (248)
292 PRK10669 putative cation:proto 70.5 21 0.00046 32.7 7.7 52 71-125 418-469 (558)
293 cd08259 Zn_ADH5 Alcohol dehydr 70.5 39 0.00085 27.8 8.8 52 64-118 158-209 (332)
294 PF01262 AlaDh_PNT_C: Alanine 70.5 19 0.00041 27.4 6.3 50 71-123 21-70 (168)
295 KOG1177 Long chain fatty acid 70.4 56 0.0012 29.8 9.8 109 34-143 68-180 (596)
296 cd08251 polyketide_synthase po 70.3 55 0.0012 26.3 10.3 54 62-118 114-167 (303)
297 TIGR02853 spore_dpaA dipicolin 70.2 37 0.0008 28.4 8.5 65 51-118 132-196 (287)
298 PRK11706 TDP-4-oxo-6-deoxy-D-g 69.9 47 0.001 28.6 9.4 55 71-125 47-101 (375)
299 PRK12809 putative oxidoreducta 69.9 17 0.00037 34.0 7.0 53 71-123 311-381 (639)
300 PRK10490 sensor protein KdpD; 69.7 74 0.0016 31.2 11.5 107 71-184 252-375 (895)
301 cd08258 Zn_ADH4 Alcohol dehydr 69.5 64 0.0014 26.7 10.2 55 63-119 159-213 (306)
302 PRK11658 UDP-4-amino-4-deoxy-L 69.4 48 0.001 28.6 9.4 53 73-125 51-103 (379)
303 CHL00194 ycf39 Ycf39; Provisio 69.4 31 0.00068 28.8 8.0 32 71-102 2-33 (317)
304 cd08278 benzyl_alcohol_DH Benz 69.4 69 0.0015 27.3 10.3 57 63-122 181-237 (365)
305 cd08249 enoyl_reductase_like e 69.3 34 0.00074 28.7 8.3 51 67-121 153-203 (339)
306 cd08269 Zn_ADH9 Alcohol dehydr 69.2 61 0.0013 26.4 10.9 56 62-121 123-179 (312)
307 cd05281 TDH Threonine dehydrog 69.2 35 0.00076 28.6 8.3 52 67-121 162-213 (341)
308 PRK09072 short chain dehydroge 69.1 38 0.00083 27.2 8.3 33 70-102 6-38 (263)
309 PRK05650 short chain dehydroge 68.9 45 0.00097 26.9 8.7 55 71-125 2-57 (270)
310 TIGR01316 gltA glutamate synth 68.7 22 0.00048 31.6 7.3 52 71-122 273-329 (449)
311 cd05280 MDR_yhdh_yhfp Yhdh and 68.7 44 0.00095 27.5 8.7 48 71-121 149-196 (325)
312 PRK09291 short chain dehydroge 68.7 21 0.00045 28.5 6.6 54 71-124 4-58 (257)
313 PRK09422 ethanol-active dehydr 68.5 63 0.0014 26.8 9.7 57 62-122 156-213 (338)
314 TIGR02379 ECA_wecE TDP-4-keto- 68.5 45 0.00097 28.9 9.0 55 71-125 47-101 (376)
315 cd08253 zeta_crystallin Zeta-c 68.4 62 0.0014 26.2 10.5 55 64-121 140-194 (325)
316 PLN02702 L-idonate 5-dehydroge 68.4 54 0.0012 27.8 9.4 57 62-121 175-231 (364)
317 PRK07067 sorbitol dehydrogenas 68.3 49 0.0011 26.4 8.7 54 70-125 7-60 (257)
318 PRK05826 pyruvate kinase; Prov 68.3 90 0.002 28.2 10.9 118 84-206 263-400 (465)
319 PRK06348 aspartate aminotransf 68.3 77 0.0017 27.2 11.6 84 71-155 90-175 (384)
320 KOG1197 Predicted quinone oxid 68.2 36 0.00077 28.5 7.6 55 61-118 139-193 (336)
321 cd08260 Zn_ADH6 Alcohol dehydr 68.2 65 0.0014 26.9 9.8 52 63-118 160-211 (345)
322 PLN02253 xanthoxin dehydrogena 68.1 35 0.00075 27.7 7.9 33 70-102 19-51 (280)
323 TIGR02817 adh_fam_1 zinc-bindi 68.0 48 0.001 27.5 8.9 50 69-121 149-199 (336)
324 KOG1176 Acyl-CoA synthetase [L 68.0 89 0.0019 28.8 11.0 61 66-126 69-129 (537)
325 PRK08251 short chain dehydroge 67.9 46 0.001 26.2 8.5 55 71-125 4-61 (248)
326 PRK07775 short chain dehydroge 67.8 51 0.0011 26.7 8.8 55 71-125 12-67 (274)
327 PRK07576 short chain dehydroge 67.8 48 0.001 26.8 8.6 56 70-125 10-66 (264)
328 PRK00779 ornithine carbamoyltr 67.7 35 0.00076 28.9 7.9 61 62-123 146-209 (304)
329 TIGR02823 oxido_YhdH putative 67.7 51 0.0011 27.1 9.0 53 66-121 142-195 (323)
330 cd08282 PFDH_like Pseudomonas 67.7 46 0.00099 28.5 8.8 55 62-119 170-224 (375)
331 PRK08642 fabG 3-ketoacyl-(acyl 67.5 59 0.0013 25.6 9.3 54 70-124 6-59 (253)
332 PRK09242 tropinone reductase; 67.5 50 0.0011 26.3 8.6 56 70-125 10-68 (257)
333 PRK05565 fabG 3-ketoacyl-(acyl 67.5 52 0.0011 25.8 8.6 55 71-125 7-63 (247)
334 TIGR01831 fabG_rel 3-oxoacyl-( 67.3 54 0.0012 25.7 8.7 53 73-125 2-56 (239)
335 PRK08416 7-alpha-hydroxysteroi 67.3 56 0.0012 26.2 8.9 56 70-125 9-67 (260)
336 COG1648 CysG Siroheme synthase 67.3 55 0.0012 26.2 8.5 114 71-198 13-141 (210)
337 PRK06702 O-acetylhomoserine am 67.3 51 0.0011 29.4 9.2 79 72-155 78-160 (432)
338 PRK13243 glyoxylate reductase; 67.2 74 0.0016 27.2 9.9 95 71-189 151-245 (333)
339 cd05279 Zn_ADH1 Liver alcohol 67.0 77 0.0017 27.0 10.1 54 62-118 177-230 (365)
340 PRK08192 aspartate carbamoyltr 67.0 37 0.0008 29.3 8.0 45 79-123 171-218 (338)
341 PLN02342 ornithine carbamoyltr 66.7 33 0.00072 29.7 7.6 60 62-122 188-250 (348)
342 PRK12825 fabG 3-ketoacyl-(acyl 66.7 59 0.0013 25.3 9.1 55 71-125 8-64 (249)
343 TIGR03590 PseG pseudaminic aci 66.6 73 0.0016 26.3 10.0 82 35-125 2-89 (279)
344 PRK06200 2,3-dihydroxy-2,3-dih 66.6 56 0.0012 26.2 8.8 51 70-123 7-58 (263)
345 TIGR00561 pntA NAD(P) transhyd 66.5 25 0.00053 32.2 7.1 51 71-124 165-215 (511)
346 COG0075 Serine-pyruvate aminot 66.2 30 0.00065 30.4 7.3 78 72-149 82-167 (383)
347 PRK14031 glutamate dehydrogena 66.2 29 0.00063 31.1 7.3 53 49-101 207-259 (444)
348 cd05188 MDR Medium chain reduc 66.1 63 0.0014 25.4 10.1 54 64-121 130-183 (271)
349 TIGR02095 glgA glycogen/starch 66.1 43 0.00094 29.7 8.6 30 76-105 17-46 (473)
350 cd05285 sorbitol_DH Sorbitol d 66.0 61 0.0013 27.2 9.2 58 61-121 155-212 (343)
351 PRK11891 aspartate carbamoyltr 65.9 36 0.00078 30.4 7.9 45 79-123 253-300 (429)
352 cd05278 FDH_like Formaldehyde 65.9 56 0.0012 27.2 8.9 55 63-120 162-216 (347)
353 cd08299 alcohol_DH_class_I_II_ 65.9 50 0.0011 28.3 8.7 54 62-119 184-238 (373)
354 PRK06924 short chain dehydroge 65.8 56 0.0012 25.8 8.6 53 71-124 3-55 (251)
355 cd08238 sorbose_phosphate_red 65.8 77 0.0017 27.6 10.0 59 63-123 170-238 (410)
356 PRK12748 3-ketoacyl-(acyl-carr 65.7 67 0.0015 25.6 9.2 55 71-125 7-75 (256)
357 cd08254 hydroxyacyl_CoA_DH 6-h 65.7 76 0.0016 26.2 10.2 58 62-123 159-216 (338)
358 COG1587 HemD Uroporphyrinogen- 65.6 63 0.0014 26.2 8.8 110 82-200 86-198 (248)
359 PRK07060 short chain dehydroge 65.6 64 0.0014 25.3 8.9 53 70-125 10-63 (245)
360 PRK05872 short chain dehydroge 65.5 57 0.0012 26.9 8.8 32 70-101 10-41 (296)
361 PRK12747 short chain dehydroge 65.5 41 0.0009 26.7 7.7 55 70-124 5-61 (252)
362 PRK07102 short chain dehydroge 65.2 66 0.0014 25.3 9.0 55 71-125 3-59 (243)
363 COG0159 TrpA Tryptophan syntha 65.2 69 0.0015 26.7 8.9 69 51-124 109-179 (265)
364 PRK06505 enoyl-(acyl carrier p 65.2 74 0.0016 25.9 9.5 32 70-101 8-41 (271)
365 COG1922 WecG Teichoic acid bio 65.1 56 0.0012 27.0 8.3 100 81-187 71-173 (253)
366 cd08248 RTN4I1 Human Reticulon 65.1 46 0.001 27.8 8.3 48 69-120 163-210 (350)
367 PRK09730 putative NAD(P)-bindi 65.1 65 0.0014 25.2 9.4 55 71-125 3-59 (247)
368 cd08261 Zn_ADH7 Alcohol dehydr 64.9 81 0.0018 26.2 10.6 53 62-118 153-205 (337)
369 PRK08945 putative oxoacyl-(acy 64.8 68 0.0015 25.3 8.9 34 69-102 12-45 (247)
370 cd06268 PBP1_ABC_transporter_L 64.7 69 0.0015 25.4 14.6 142 53-205 55-219 (298)
371 cd08270 MDR4 Medium chain dehy 64.6 69 0.0015 26.0 9.1 49 68-119 132-180 (305)
372 smart00822 PKS_KR This enzymat 64.6 52 0.0011 23.8 8.3 55 71-125 2-61 (180)
373 cd05284 arabinose_DH_like D-ar 64.5 52 0.0011 27.4 8.5 52 66-121 165-217 (340)
374 cd05283 CAD1 Cinnamyl alcohol 64.5 54 0.0012 27.5 8.6 52 66-121 167-218 (337)
375 PRK08220 2,3-dihydroxybenzoate 64.5 54 0.0012 25.9 8.2 34 70-103 9-42 (252)
376 cd08290 ETR 2-enoyl thioester 64.5 51 0.0011 27.5 8.4 59 64-122 142-201 (341)
377 cd08262 Zn_ADH8 Alcohol dehydr 64.4 61 0.0013 27.0 8.9 56 62-120 155-210 (341)
378 PRK08339 short chain dehydroge 64.4 55 0.0012 26.5 8.3 33 70-102 9-41 (263)
379 TIGR01829 AcAcCoA_reduct aceto 64.2 45 0.00097 26.1 7.6 55 71-125 2-58 (242)
380 PRK07063 short chain dehydroge 64.2 65 0.0014 25.7 8.7 56 70-125 8-66 (260)
381 PRK07856 short chain dehydroge 64.0 48 0.001 26.3 7.9 33 70-102 7-39 (252)
382 PRK07023 short chain dehydroge 64.0 48 0.001 26.2 7.8 51 71-125 3-53 (243)
383 PRK12824 acetoacetyl-CoA reduc 64.0 66 0.0014 25.2 8.6 55 71-125 4-60 (245)
384 PRK12743 oxidoreductase; Provi 63.9 67 0.0015 25.6 8.7 76 106-186 16-91 (256)
385 PRK12775 putative trifunctiona 63.8 45 0.00097 33.2 8.8 31 71-101 431-461 (1006)
386 PRK15408 autoinducer 2-binding 63.5 93 0.002 26.4 16.0 137 55-201 71-233 (336)
387 PF00702 Hydrolase: haloacid d 63.4 37 0.00081 26.0 6.9 67 52-125 131-204 (215)
388 PLN02527 aspartate carbamoyltr 63.4 76 0.0016 26.9 9.1 45 79-123 163-210 (306)
389 PF02310 B12-binding: B12 bind 63.4 21 0.00045 25.1 5.0 94 83-185 18-114 (121)
390 PRK07069 short chain dehydroge 63.3 72 0.0016 25.1 9.8 31 72-102 2-32 (251)
391 PRK04870 histidinol-phosphate 63.2 54 0.0012 27.8 8.4 82 72-154 83-165 (356)
392 TIGR01830 3oxo_ACP_reduc 3-oxo 63.2 59 0.0013 25.3 8.2 53 73-125 2-56 (239)
393 PLN02178 cinnamyl-alcohol dehy 62.9 29 0.00063 30.0 6.7 52 67-121 177-228 (375)
394 PRK06123 short chain dehydroge 62.9 46 0.00099 26.2 7.5 55 71-125 4-60 (248)
395 PRK07889 enoyl-(acyl carrier p 62.8 65 0.0014 25.9 8.5 30 71-100 9-40 (256)
396 PRK09414 glutamate dehydrogena 62.4 36 0.00079 30.5 7.3 53 49-101 211-263 (445)
397 PLN02583 cinnamoyl-CoA reducta 62.4 59 0.0013 26.9 8.3 33 70-102 7-39 (297)
398 TIGR00658 orni_carb_tr ornithi 62.4 55 0.0012 27.7 8.1 51 73-123 152-208 (304)
399 PRK13376 pyrB bifunctional asp 62.2 75 0.0016 29.2 9.3 46 79-124 186-234 (525)
400 PRK14807 histidinol-phosphate 62.1 54 0.0012 27.8 8.2 53 72-125 78-130 (351)
401 PRK06057 short chain dehydroge 61.9 80 0.0017 25.1 9.8 53 70-125 8-61 (255)
402 PF02887 PK_C: Pyruvate kinase 61.8 54 0.0012 23.2 7.0 81 54-142 6-87 (117)
403 PRK07577 short chain dehydroge 61.5 75 0.0016 24.7 9.3 48 70-125 4-51 (234)
404 PF02670 DXP_reductoisom: 1-de 61.4 63 0.0014 23.8 11.8 108 73-197 2-112 (129)
405 PRK05562 precorrin-2 dehydroge 61.4 43 0.00092 27.1 6.9 114 72-198 27-154 (223)
406 PRK07533 enoyl-(acyl carrier p 61.4 81 0.0017 25.3 8.8 32 71-102 12-45 (258)
407 PRK02255 putrescine carbamoylt 61.4 51 0.0011 28.4 7.8 52 71-122 156-213 (338)
408 cd08240 6_hydroxyhexanoate_dh_ 61.3 98 0.0021 25.9 10.3 53 66-121 173-225 (350)
409 PF02254 TrkA_N: TrkA-N domain 61.3 52 0.0011 22.8 7.2 49 74-125 2-50 (116)
410 PRK12384 sorbitol-6-phosphate 61.2 82 0.0018 25.0 9.0 33 70-102 3-35 (259)
411 PRK02842 light-independent pro 61.2 1.2E+02 0.0026 26.9 10.6 54 71-124 291-346 (427)
412 PF12000 Glyco_trans_4_3: Gkyc 61.1 18 0.0004 28.0 4.6 38 163-206 55-92 (171)
413 PRK12831 putative oxidoreducta 61.0 39 0.00084 30.3 7.3 52 71-122 282-338 (464)
414 PRK13581 D-3-phosphoglycerate 61.0 84 0.0018 28.7 9.6 103 71-197 141-245 (526)
415 COG2390 DeoR Transcriptional r 60.9 1.1E+02 0.0023 26.3 10.0 20 180-199 117-136 (321)
416 PRK14805 ornithine carbamoyltr 60.8 36 0.00078 28.8 6.7 53 71-123 149-207 (302)
417 PRK12827 short chain dehydroge 60.5 80 0.0017 24.7 9.7 56 70-125 7-67 (249)
418 PRK06180 short chain dehydroge 60.4 72 0.0016 25.9 8.4 33 70-102 5-37 (277)
419 PRK09545 znuA high-affinity zi 60.3 71 0.0015 27.0 8.5 85 84-172 212-306 (311)
420 cd08286 FDH_like_ADH2 formalde 60.2 79 0.0017 26.4 8.8 54 63-120 161-215 (345)
421 PRK07825 short chain dehydroge 60.1 90 0.0019 25.1 9.6 53 70-125 6-60 (273)
422 cd00616 AHBA_syn 3-amino-5-hyd 59.9 85 0.0018 26.2 9.0 53 73-125 36-88 (352)
423 cd08235 iditol_2_DH_like L-idi 59.7 1E+02 0.0022 25.6 10.9 56 62-120 159-214 (343)
424 cd06451 AGAT_like Alanine-glyo 59.6 62 0.0013 27.3 8.1 51 73-125 53-106 (356)
425 PLN00175 aminotransferase fami 59.5 1.2E+02 0.0026 26.5 11.1 83 72-155 117-200 (413)
426 PRK06836 aspartate aminotransf 59.4 1.2E+02 0.0025 26.2 10.6 82 72-154 98-180 (394)
427 PF00289 CPSase_L_chain: Carba 59.4 61 0.0013 23.0 7.1 49 72-123 4-52 (110)
428 cd00288 Pyruvate_Kinase Pyruva 59.3 87 0.0019 28.4 9.2 86 48-141 359-449 (480)
429 PRK15452 putative protease; Pr 59.3 1.3E+02 0.0029 26.9 10.7 100 97-206 5-114 (443)
430 PLN02586 probable cinnamyl alc 59.3 60 0.0013 27.7 8.0 55 64-121 179-233 (360)
431 PRK06482 short chain dehydroge 59.3 68 0.0015 25.9 8.1 52 71-125 4-56 (276)
432 PRK14804 ornithine carbamoyltr 59.2 49 0.0011 28.1 7.3 35 71-105 155-189 (311)
433 cd05289 MDR_like_2 alcohol deh 59.2 92 0.002 25.0 9.4 50 64-117 140-189 (309)
434 PRK12746 short chain dehydroge 59.2 88 0.0019 24.7 8.8 56 70-125 7-64 (254)
435 PRK06849 hypothetical protein; 59.0 1.1E+02 0.0024 26.5 9.7 32 71-102 6-37 (389)
436 PRK08335 translation initiatio 58.9 63 0.0014 27.0 7.7 49 51-103 120-170 (275)
437 PF13580 SIS_2: SIS domain; PD 58.9 25 0.00053 25.8 4.8 35 66-100 101-137 (138)
438 PRK12778 putative bifunctional 58.8 85 0.0018 30.0 9.6 97 70-186 431-528 (752)
439 cd06450 DOPA_deC_like DOPA dec 58.4 67 0.0014 26.8 8.1 53 73-125 60-125 (345)
440 PRK05166 histidinol-phosphate 58.4 63 0.0014 27.6 8.0 53 72-125 90-142 (371)
441 PF13478 XdhC_C: XdhC Rossmann 58.4 18 0.00039 26.8 4.0 32 73-104 1-32 (136)
442 PF02737 3HCDH_N: 3-hydroxyacy 58.3 36 0.00078 26.3 5.9 31 73-103 2-32 (180)
443 cd08255 2-desacetyl-2-hydroxye 58.3 84 0.0018 25.2 8.4 51 62-116 91-142 (277)
444 PRK12859 3-ketoacyl-(acyl-carr 58.2 95 0.0021 24.8 12.6 56 70-125 7-76 (256)
445 TIGR03315 Se_ygfK putative sel 58.1 97 0.0021 30.9 9.9 32 71-102 538-569 (1012)
446 cd08272 MDR6 Medium chain dehy 58.1 1E+02 0.0022 25.1 10.5 56 62-121 138-193 (326)
447 PRK07201 short chain dehydroge 57.7 57 0.0012 30.2 8.1 56 70-125 372-428 (657)
448 PRK08690 enoyl-(acyl carrier p 57.6 88 0.0019 25.2 8.4 31 70-100 7-39 (261)
449 PRK09375 quinolinate synthetas 57.5 1.1E+02 0.0023 26.3 9.0 115 83-206 146-267 (319)
450 PRK05599 hypothetical protein; 57.4 97 0.0021 24.7 10.2 30 71-101 2-31 (246)
451 PF03808 Glyco_tran_WecB: Glyc 57.3 85 0.0018 24.0 8.1 53 73-125 53-110 (172)
452 PRK06567 putative bifunctional 57.2 48 0.001 32.9 7.5 31 71-101 384-414 (1028)
453 PRK07370 enoyl-(acyl carrier p 57.1 1E+02 0.0022 24.8 9.4 53 70-122 7-64 (258)
454 cd08241 QOR1 Quinone oxidoredu 57.1 1E+02 0.0022 24.9 10.3 55 63-120 134-188 (323)
455 TIGR02622 CDP_4_6_dhtase CDP-g 57.0 83 0.0018 26.5 8.5 34 70-103 5-38 (349)
456 PRK09147 succinyldiaminopimela 56.9 1.3E+02 0.0028 25.9 12.7 80 44-125 64-147 (396)
457 PRK10669 putative cation:proto 56.9 1.3E+02 0.0028 27.6 10.1 40 167-206 472-512 (558)
458 cd08234 threonine_DH_like L-th 56.8 1.1E+02 0.0024 25.2 9.5 54 62-118 153-206 (334)
459 TIGR00936 ahcY adenosylhomocys 56.8 32 0.00069 30.5 5.9 32 67-99 193-224 (406)
460 COG0493 GltD NADPH-dependent g 56.7 59 0.0013 29.3 7.7 96 71-187 124-220 (457)
461 TIGR03772 anch_rpt_subst ancho 56.6 69 0.0015 29.0 8.1 84 84-172 380-474 (479)
462 cd06324 PBP1_ABC_sugar_binding 56.5 1.1E+02 0.0024 25.1 17.6 38 159-200 188-225 (305)
463 COG3688 Predicted RNA-binding 56.5 39 0.00084 26.0 5.5 92 81-172 36-132 (173)
464 PRK05875 short chain dehydroge 56.1 95 0.0021 25.0 8.4 33 70-102 8-40 (276)
465 PRK06125 short chain dehydroge 56.1 81 0.0017 25.2 7.9 33 70-102 8-40 (259)
466 PRK02731 histidinol-phosphate 56.0 64 0.0014 27.4 7.6 53 72-125 86-138 (367)
467 PRK12810 gltD glutamate syntha 55.9 57 0.0012 29.2 7.5 76 46-121 112-212 (471)
468 PF11814 DUF3335: Peptidase_C3 55.8 87 0.0019 25.1 7.6 27 78-104 52-78 (207)
469 cd08279 Zn_ADH_class_III Class 55.7 1.3E+02 0.0028 25.5 10.7 55 62-119 176-230 (363)
470 PRK07324 transaminase; Validat 55.4 58 0.0013 28.0 7.3 83 72-155 82-166 (373)
471 COG0026 PurK Phosphoribosylami 55.2 73 0.0016 27.9 7.6 33 72-104 3-35 (375)
472 PRK15407 lipopolysaccharide bi 55.0 1.4E+02 0.0031 26.5 9.8 54 72-125 80-141 (438)
473 PRK07984 enoyl-(acyl carrier p 55.0 1.1E+02 0.0025 24.7 9.0 32 70-101 7-40 (262)
474 PF00391 PEP-utilizers: PEP-ut 55.0 20 0.00044 23.7 3.5 31 71-102 32-62 (80)
475 PRK04284 ornithine carbamoyltr 54.9 1.3E+02 0.0027 25.9 9.1 45 79-123 166-216 (332)
476 PRK08159 enoyl-(acyl carrier p 54.7 88 0.0019 25.5 8.0 31 70-100 11-43 (272)
477 PRK08159 enoyl-(acyl carrier p 54.4 1.1E+02 0.0024 24.9 8.6 9 57-65 29-37 (272)
478 PRK06436 glycerate dehydrogena 54.4 70 0.0015 27.0 7.4 92 71-189 123-214 (303)
479 TIGR01318 gltD_gamma_fam gluta 54.2 55 0.0012 29.3 7.1 51 71-121 142-210 (467)
480 cd08550 GlyDH-like Glycerol_de 54.1 77 0.0017 27.1 7.8 8 180-187 81-88 (349)
481 PRK08267 short chain dehydroge 54.1 82 0.0018 25.1 7.7 32 71-102 3-34 (260)
482 PLN02918 pyridoxine (pyridoxam 54.1 1.4E+02 0.003 27.6 9.7 49 71-119 137-192 (544)
483 PRK12829 short chain dehydroge 54.1 1.1E+02 0.0024 24.2 8.7 33 70-102 12-44 (264)
484 COG0836 {ManC} Mannose-1-phosp 54.0 48 0.001 28.4 6.2 55 72-142 80-138 (333)
485 PRK07178 pyruvate carboxylase 53.9 78 0.0017 28.4 8.1 31 72-102 4-34 (472)
486 PRK06484 short chain dehydroge 53.7 1E+02 0.0022 27.5 8.9 53 70-124 6-58 (520)
487 COG0505 CarA Carbamoylphosphat 53.7 1.3E+02 0.0029 26.1 8.9 54 96-156 181-235 (368)
488 cd08265 Zn_ADH3 Alcohol dehydr 53.7 98 0.0021 26.6 8.5 55 64-121 199-253 (384)
489 cd08276 MDR7 Medium chain dehy 53.6 1.2E+02 0.0027 24.8 10.5 55 63-121 155-209 (336)
490 PF02608 Bmp: Basic membrane p 53.5 30 0.00065 29.0 5.1 119 83-205 23-163 (306)
491 PLN02477 glutamate dehydrogena 53.5 66 0.0014 28.6 7.3 53 49-102 185-238 (410)
492 cd06453 SufS_like Cysteine des 53.5 76 0.0017 26.9 7.7 54 72-125 63-122 (373)
493 cd08185 Fe-ADH1 Iron-containin 53.4 1.1E+02 0.0025 26.4 8.8 94 96-196 5-102 (380)
494 PRK15481 transcriptional regul 53.4 1.1E+02 0.0023 26.9 8.7 80 72-155 143-225 (431)
495 PRK07074 short chain dehydroge 53.3 1.1E+02 0.0024 24.2 8.6 31 71-101 4-34 (257)
496 PF01494 FAD_binding_3: FAD bi 53.1 18 0.0004 29.9 3.8 31 72-102 3-33 (356)
497 PLN03026 histidinol-phosphate 53.0 89 0.0019 26.9 8.1 82 72-155 105-188 (380)
498 PRK06718 precorrin-2 dehydroge 52.9 54 0.0012 25.9 6.2 113 71-198 11-138 (202)
499 PRK06179 short chain dehydroge 52.9 84 0.0018 25.2 7.6 50 71-125 6-55 (270)
500 PRK09257 aromatic amino acid a 52.9 1.5E+02 0.0033 25.5 10.2 78 43-124 67-149 (396)
No 1
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.9e-53 Score=351.08 Aligned_cols=197 Identities=58% Similarity=0.955 Sum_probs=187.4
Q ss_pred hhhhhccccCCcceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCCchHHHHHHH
Q 028618 9 AKDVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFM 88 (206)
Q Consensus 9 ~~~i~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~aSsGN~g~alA~~ 88 (206)
++.+.+.+++|||++++++....+++||+|+|++||+||.|||.|.+|+.+|+++|.++|| .+||++||||+|.+||+.
T Consensus 2 ~~~~~~~iG~TPlvrL~~~~~~~~~~i~~KlE~~NP~gSvKDR~A~~mI~~Ae~~G~l~pG-~tIVE~TSGNTGI~LA~v 80 (300)
T COG0031 2 YESILDLIGNTPLVRLNRLSPGTGVEIYAKLESFNPGGSVKDRIALYMIEDAEKRGLLKPG-GTIVEATSGNTGIALAMV 80 (300)
T ss_pred ccchHHHhCCCCcEeecccCCCCCceEEEEhhhcCCCCchhHHHHHHHHHHHHHcCCCCCC-CEEEEcCCChHHHHHHHH
Confidence 4568889999999999999988889999999999999999999999999999999999999 589999999999999999
Q ss_pred HHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCC-hHHHHHHHHHHHHhCCC-eEEcCCCCCCccHHHHHHhHHH
Q 028618 89 AAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKG-MKGAVQKAEEILAKTPN-AYMLQQFENPANPKIHYETTGP 166 (206)
Q Consensus 89 a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~-~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~g~~t~~~ 166 (206)
|+.+|+++++|||++++++|+++|++|||+|+.++.... +..+.+++++++++.|+ .+|++||+||.||..||.|++.
T Consensus 81 aa~~Gy~~iivmP~~~S~er~~~l~a~GAevi~t~~~~g~~~~a~~~a~el~~~~p~~~~~~~Qf~NpaN~~aH~~tT~~ 160 (300)
T COG0031 81 AAAKGYRLIIVMPETMSQERRKLLRALGAEVILTPGAPGNMKGAIERAKELAAEIPGYAVWLNQFENPANPEAHYETTGP 160 (300)
T ss_pred HHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEcCCCCCchHHHHHHHHHHHHhCCCceEchhhcCCCccHHHHHhhhHH
Confidence 999999999999999999999999999999999998444 77899999999999988 6778899999999999999999
Q ss_pred HHHhhhCCCCCEEEEccCcchHHHHHHHHHHhcCCCCeEC
Q 028618 167 ELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKVR 206 (206)
Q Consensus 167 Ei~~q~~~~~d~vv~~vG~Gg~~aGi~~~~k~~~p~~~vi 206 (206)
||++|+++.+|++|+++|||||++|++++||+.+|+++||
T Consensus 161 EI~~~~~g~~d~fVagvGTGGTitGvar~Lk~~~p~i~iv 200 (300)
T COG0031 161 EIWQQTDGKVDAFVAGVGTGGTITGVARYLKERNPNVRIV 200 (300)
T ss_pred HHHHHhCCCCCEEEEeCCcchhHHHHHHHHHhhCCCcEEE
Confidence 9999998889999999999999999999999999999985
No 2
>PLN03013 cysteine synthase
Probab=100.00 E-value=2.5e-53 Score=367.70 Aligned_cols=201 Identities=75% Similarity=1.236 Sum_probs=189.5
Q ss_pred cchhhhhhccccCCcceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCCchHHHH
Q 028618 6 SNIAKDVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGL 85 (206)
Q Consensus 6 ~~~~~~i~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~aSsGN~g~al 85 (206)
+++++.+.+.+++|||++++.+++..+++||+|+|++||+||||||+|.+++..++++|.+.+|+++||++|+||||.|+
T Consensus 111 ~~~~~~i~~~iG~TPLv~l~~l~~~~g~~Iy~KlE~lNPtGSfKdR~A~~~l~~a~~~G~l~pG~~~VVeaSSGN~G~AL 190 (429)
T PLN03013 111 LNIADNVSQLIGKTPMVYLNSIAKGCVANIAAKLEIMEPCCSVKDRIGYSMVTDAEQKGFISPGKSVLVEPTSGNTGIGL 190 (429)
T ss_pred HHHHHHHHhcCCCCCeEECcccccccCCeEEEEeccCCCccccHHHHHHHHHHHHHHcCCcCCCCcEEEEECCcHHHHHH
Confidence 35788899999999999999998877889999999999999999999999999999999998887789999999999999
Q ss_pred HHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHHHHhHH
Q 028618 86 AFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTG 165 (206)
Q Consensus 86 A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~ 165 (206)
|++|+.+|++++||||+++++.|+++|+.+||+|+.+++...+.++.+.+++++++.++++|++||+|+.++..||.|+|
T Consensus 191 A~~a~~~G~~~~VvvP~~~s~~K~~~ira~GAeVi~v~~~~~~~~a~~~A~ela~~~~g~~~~~qy~Np~n~~ah~~ttg 270 (429)
T PLN03013 191 AFIAASRGYRLILTMPASMSMERRVLLKAFGAELVLTDPAKGMTGAVQKAEEILKNTPDAYMLQQFDNPANPKIHYETTG 270 (429)
T ss_pred HHHHHHcCCCEEEEECCCCcHHHHHHHHHcCCEEEEECCCCChHHHHHHHHHHHhhcCCeEeCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998775566888999999888778999999999999878999999
Q ss_pred HHHHhhhCCCCCEEEEccCcchHHHHHHHHHHhcCCCCeEC
Q 028618 166 PELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKVR 206 (206)
Q Consensus 166 ~Ei~~q~~~~~d~vv~~vG~Gg~~aGi~~~~k~~~p~~~vi 206 (206)
+||++|+++.||+||+|+||||+++|++++||+.+|++|||
T Consensus 271 ~EI~eq~~~~~D~vV~~vGtGGtisGiar~lKe~~P~vkVi 311 (429)
T PLN03013 271 PEIWDDTKGKVDIFVAGIGTGGTITGVGRFIKEKNPKTQVI 311 (429)
T ss_pred HHHHHhcCCCCCEEEEeCCccHHHHHHHHHHHhhCCCCEEE
Confidence 99999997789999999999999999999999999999986
No 3
>PLN02565 cysteine synthase
Probab=100.00 E-value=7e-53 Score=356.87 Aligned_cols=200 Identities=89% Similarity=1.351 Sum_probs=186.1
Q ss_pred chhhhhhccccCCcceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCCchHHHHH
Q 028618 7 NIAKDVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLA 86 (206)
Q Consensus 7 ~~~~~i~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~aSsGN~g~alA 86 (206)
.+++.+...+++|||++++.++...+.+||+|+|++|||||||||+|.+++..+.++|.+.+|.+.||++|+||||+|+|
T Consensus 4 ~~~~~~~~~ig~TPLv~l~~l~~~~~~~i~~K~E~~nPtGSfKdR~A~~~l~~~~~~g~~~~g~~~vv~aSsGN~g~alA 83 (322)
T PLN02565 4 SIAKDVTELIGKTPLVYLNNVVDGCVARIAAKLEMMEPCSSVKDRIGYSMITDAEEKGLIKPGESVLIEPTSGNTGIGLA 83 (322)
T ss_pred hhhhhHHHHhCCCceEEccccCCCCCceEEEEecccCCccchHHHHHHHHHHHHHHcCCCCCCCcEEEEECCChHHHHHH
Confidence 45677899999999999988776667899999999999999999999999999999998888867899999999999999
Q ss_pred HHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHHHHhHHH
Q 028618 87 FMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGP 166 (206)
Q Consensus 87 ~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~ 166 (206)
++|+.+|++|+||||+++++.|+++++.+||+|+.++.+.+++++.+.+++++++.++++|++||+|+.|+..||+|+++
T Consensus 84 ~~a~~~G~~~~ivvp~~~~~~k~~~i~~~GA~V~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~q~~n~~n~~~~~~t~a~ 163 (322)
T PLN02565 84 FMAAAKGYKLIITMPASMSLERRIILLAFGAELVLTDPAKGMKGAVQKAEEILAKTPNSYILQQFENPANPKIHYETTGP 163 (322)
T ss_pred HHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEEeCCCCCcHHHHHHHHHHHHhCCCcEeecccCCHhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999987644678889999998887688999999999998889999999
Q ss_pred HHHhhhCCCCCEEEEccCcchHHHHHHHHHHhcCCCCeEC
Q 028618 167 ELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKVR 206 (206)
Q Consensus 167 Ei~~q~~~~~d~vv~~vG~Gg~~aGi~~~~k~~~p~~~vi 206 (206)
||++|+++.||+||+|+|+||+++|++.+||+.+|++|||
T Consensus 164 Ei~~q~~~~~d~vv~~vG~GG~l~Gi~~~lk~~~p~~kvi 203 (322)
T PLN02565 164 EIWKGTGGKVDAFVSGIGTGGTITGAGKYLKEQNPDIKLY 203 (322)
T ss_pred HHHHhcCCCCCEEEEcCCchHHHHHHHHHHHHhCCCCEEE
Confidence 9999997679999999999999999999999999999986
No 4
>PRK11761 cysM cysteine synthase B; Provisional
Probab=100.00 E-value=2.7e-52 Score=349.85 Aligned_cols=198 Identities=49% Similarity=0.759 Sum_probs=184.6
Q ss_pred chhhhhhccccCCcceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCCchHHHHH
Q 028618 7 NIAKDVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLA 86 (206)
Q Consensus 7 ~~~~~i~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~aSsGN~g~alA 86 (206)
|+|+++.+.+++|||+++++++...|++||+|+|++|||||||+|++.+++.++.++|.+.++ ++||++|+||||+|+|
T Consensus 1 ~~~~~i~~~~g~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~R~a~~~~~~a~~~g~~~~g-~~vv~aSsGN~g~alA 79 (296)
T PRK11761 1 MAYPTLEDTIGNTPLVKLQRLPPDRGNTILAKLEGNNPAGSVKDRPALSMIVQAEKRGEIKPG-DTLIEATSGNTGIALA 79 (296)
T ss_pred CccccHHHhcCCCceEeccccccCCCCEEEEEEcccCCCCCchhHHHHHHHHHHHHcCCCCCC-CEEEEeCCChHHHHHH
Confidence 467889999999999999999888889999999999999999999999999999999987776 5799999999999999
Q ss_pred HHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHHHHhHHH
Q 028618 87 FMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGP 166 (206)
Q Consensus 87 ~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~ 166 (206)
++|+.+|++|+||||+++++.|++.++.+||+|+.++....++++.+.+++++++. +++|++||+|+.++..||.|++.
T Consensus 80 ~~a~~~G~~~~i~~p~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~l~~~~-~~~~~~~~~n~~~~~~~~~t~~~ 158 (296)
T PRK11761 80 MIAAIKGYRMKLIMPENMSQERRAAMRAYGAELILVPKEQGMEGARDLALQMQAEG-EGKVLDQFANPDNPLAHYETTGP 158 (296)
T ss_pred HHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHhcc-CCEecCCCCChhhHHHHhhchHH
Confidence 99999999999999999999999999999999999997444778888899988876 78999999999998889999999
Q ss_pred HHHhhhCCCCCEEEEccCcchHHHHHHHHHHhcCCCCeEC
Q 028618 167 ELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKVR 206 (206)
Q Consensus 167 Ei~~q~~~~~d~vv~~vG~Gg~~aGi~~~~k~~~p~~~vi 206 (206)
||++|+++.+|+||+|+|+||+++|++.+||+.+|++|||
T Consensus 159 Ei~eq~~~~~d~iv~~vG~Gg~~~Gi~~~lk~~~~~~kvi 198 (296)
T PRK11761 159 EIWRQTEGRITHFVSSMGTTGTIMGVSRYLKEQNPAVQIV 198 (296)
T ss_pred HHHHhcCCCCCEEEecCCcHHHHHHHHHHHHHhCCCCEEE
Confidence 9999997679999999999999999999999999999986
No 5
>PLN02556 cysteine synthase/L-3-cyanoalanine synthase
Probab=100.00 E-value=8.4e-52 Score=355.32 Aligned_cols=201 Identities=62% Similarity=1.040 Sum_probs=187.7
Q ss_pred cchhhhhhccccCCcceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCCchHHHH
Q 028618 6 SNIAKDVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGL 85 (206)
Q Consensus 6 ~~~~~~i~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~aSsGN~g~al 85 (206)
+++++++...+++|||+++++++...|++||+|+|++||+||||||++.+++.++.++|.+.||.++||++|+||||+|+
T Consensus 47 ~~~~~~v~~~ig~TPl~~l~~l~~~~g~~I~~KlE~~nPtGS~KdR~A~~~l~~a~~~G~i~pG~~~vV~aSsGN~G~al 126 (368)
T PLN02556 47 TKIKTDASQLIGKTPLVYLNKVTEGCGAYIAAKQEMFQPTSSIKDRPALAMIEDAEKKNLITPGKTTLIEPTSGNMGISL 126 (368)
T ss_pred chhhhhHHHhcCCCccEEccccccccCCEEEEEecccCCccchHHHHHHHHHHHHHHcCCcCCCCCEEEEeCCchHHHHH
Confidence 34668899999999999999998888899999999999999999999999999999999999987889999999999999
Q ss_pred HHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHHHHhHH
Q 028618 86 AFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTG 165 (206)
Q Consensus 86 A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~ 165 (206)
|++|+.+|++|++|||+.++..|+++++.+||+|+.++......+.++.+.++++++++++|++||+|+.++..||.+++
T Consensus 127 A~~a~~~G~~~~ivvp~~~~~~k~~~lr~~GA~Vi~~~~~~~~~~~~~~a~~l~~~~~~~~~~~q~~np~~~~~g~~ttg 206 (368)
T PLN02556 127 AFMAAMKGYKMILTMPSYTSLERRVTMRAFGAELVLTDPTKGMGGTVKKAYELLESTPDAFMLQQFSNPANTQVHFETTG 206 (368)
T ss_pred HHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECCCCCccHHHHHHHHHHHhcCCCCccCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998654345788888888888888999999999999767999999
Q ss_pred HHHHhhhCCCCCEEEEccCcchHHHHHHHHHHhcCCCCeEC
Q 028618 166 PELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKVR 206 (206)
Q Consensus 166 ~Ei~~q~~~~~d~vv~~vG~Gg~~aGi~~~~k~~~p~~~vi 206 (206)
.||++|+.+.+|+||+|+|||||++|++.+||+.+|++|||
T Consensus 207 ~EI~eq~~~~~D~vV~~vGtGGt~aGv~~~lk~~~p~~kVi 247 (368)
T PLN02556 207 PEIWEDTLGQVDIFVMGIGSGGTVSGVGKYLKSKNPNVKIY 247 (368)
T ss_pred HHHHHhcCCCCCEEEEcCCcchHHHHHHHHHHHhCCCCEEE
Confidence 99999986689999999999999999999999999999986
No 6
>PLN00011 cysteine synthase
Probab=100.00 E-value=4.3e-51 Score=346.51 Aligned_cols=204 Identities=72% Similarity=1.137 Sum_probs=187.7
Q ss_pred ccccchhhhhhccccCCcceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCCchH
Q 028618 3 VESSNIAKDVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTG 82 (206)
Q Consensus 3 ~~~~~~~~~i~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~aSsGN~g 82 (206)
+|+....+.+.+.+++|||+++++++...|.+||+|+|++|||||||+|++.+++..+.++|.+.|+.++||++|+||||
T Consensus 2 ~~~~~~~~~~~~~~g~TPl~~l~~l~~~~g~~i~~K~E~~nPtGS~K~R~a~~~l~~a~~~g~~~~g~~~vv~aSsGN~g 81 (323)
T PLN00011 2 EDRCLIKNDVTELIGNTPMVYLNNIVDGCVARIAAKLEMMEPCSSVKDRIAYSMIKDAEDKGLITPGKSTLIEATAGNTG 81 (323)
T ss_pred cchhhHHhhHHHHhCCCceEEccccCCCCCceEEEEecccCCccccchHHHHHHHHHHHHcCCCCCCCcEEEEeCCChHH
Confidence 35556777888999999999999988766789999999999999999999999999999999888876789999999999
Q ss_pred HHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHHHH
Q 028618 83 IGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYE 162 (206)
Q Consensus 83 ~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~ 162 (206)
+|+|++|+.+|++|++|||..+++.|+++++.+||+|+.++.+...+++.+.+++++++.++++|++||+|+.++..||.
T Consensus 82 ~alA~~a~~~G~~~~ivvp~~~~~~k~~~i~~~GA~V~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~n~~n~~~~~~ 161 (323)
T PLN00011 82 IGLACIGAARGYKVILVMPSTMSLERRIILRALGAEVHLTDQSIGLKGMLEKAEEILSKTPGGYIPQQFENPANPEIHYR 161 (323)
T ss_pred HHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHcCCEEEEECCCcChHHHHHHHHHHHHhCCCeEEeccccCCccHHHHHH
Confidence 99999999999999999999999999999999999999999764445677888888888778899999999999878999
Q ss_pred hHHHHHHhhhCCCCCEEEEccCcchHHHHHHHHHHhcCCCCeEC
Q 028618 163 TTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKVR 206 (206)
Q Consensus 163 t~~~Ei~~q~~~~~d~vv~~vG~Gg~~aGi~~~~k~~~p~~~vi 206 (206)
+++.||++|+.+.||+||+|+|||||++|++.+||+.+|++|||
T Consensus 162 t~~~EI~~q~~~~~D~iv~~vGtGGt~aGi~~~lk~~~~~~kvi 205 (323)
T PLN00011 162 TTGPEIWRDSAGKVDILVAGVGTGGTATGVGKFLKEKNKDIKVC 205 (323)
T ss_pred HHHHHHHHhcCCCCCEEEEeCCchHHHHHHHHHHHhhCCCCEEE
Confidence 99999999996689999999999999999999999999999986
No 7
>COG1171 IlvA Threonine dehydratase [Amino acid transport and metabolism]
Probab=100.00 E-value=6.6e-52 Score=347.49 Aligned_cols=194 Identities=25% Similarity=0.322 Sum_probs=181.6
Q ss_pred cchhhhhhccccCCcceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCCchHHHH
Q 028618 6 SNIAKDVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGL 85 (206)
Q Consensus 6 ~~~~~~i~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~aSsGN~g~al 85 (206)
...+.+++..+.+|||.+++.|++.+|++||+|+|++||+||||.|||++.+..+.+++.. ..+||++|+||||+++
T Consensus 13 ~~A~~ri~~~~~~TPL~~s~~Ls~~~g~~v~lK~E~lQ~~gSFK~RGA~n~i~~Ls~e~~~---~~gViaaSaGNHaQGv 89 (347)
T COG1171 13 LAAAARLKGVVNPTPLQRSPSLSERLGAEIYLKRENLQPVGSFKIRGAYNKLSSLSEEEER---AAGVIAASAGNHAQGV 89 (347)
T ss_pred HHHHHHHhCcccCCCcccchhhHHhhCceEEEeeccCcccccchhhhHHHHHHhcChhhhh---cCceEEecCCcHHHHH
Confidence 3456789999999999999999999999999999999999999999999999987644322 2579999999999999
Q ss_pred HHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHHHHhHH
Q 028618 86 AFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTG 165 (206)
Q Consensus 86 A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~ 165 (206)
|++|+++|+|++||||.++|..|++..+.||++|++++.+ |+++...+.++++++ |+.|++|||+|+. ++||+|++
T Consensus 90 A~aa~~lGi~a~IvMP~~tp~~Kv~a~r~~GaeVil~g~~--~dda~~~a~~~a~~~-G~~~i~pfD~p~v-iAGQGTi~ 165 (347)
T COG1171 90 AYAAKRLGIKATIVMPETTPKIKVDATRGYGAEVILHGDN--FDDAYAAAEELAEEE-GLTFVPPFDDPDV-IAGQGTIA 165 (347)
T ss_pred HHHHHHhCCCEEEEecCCCcHHHHHHHHhcCCEEEEECCC--HHHHHHHHHHHHHHc-CCEEeCCCCCcce-eecccHHH
Confidence 9999999999999999999999999999999999999998 889999999999997 8999999999998 79999999
Q ss_pred HHHHhhhCCCCCEEEEccCcchHHHHHHHHHHhcCCCCeEC
Q 028618 166 PELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKVR 206 (206)
Q Consensus 166 ~Ei~~q~~~~~d~vv~~vG~Gg~~aGi~~~~k~~~p~~~vi 206 (206)
.||++|++..||+||||+|+||+++|++.++|...|++|||
T Consensus 166 lEileq~~~~~d~v~vpvGGGGLisGia~~~k~~~p~~~vI 206 (347)
T COG1171 166 LEILEQLPDLPDAVFVPVGGGGLISGIATALKALSPEIKVI 206 (347)
T ss_pred HHHHHhccccCCEEEEecCccHHHHHHHHHHHHhCCCCeEE
Confidence 99999996557999999999999999999999999999997
No 8
>TIGR01138 cysM cysteine synthase B. Alternate name: O-acetylserine (thiol)-lyase
Probab=100.00 E-value=7.4e-51 Score=340.40 Aligned_cols=193 Identities=49% Similarity=0.788 Sum_probs=179.7
Q ss_pred hhccccCCcceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCCchHHHHHHHHHH
Q 028618 12 VTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAA 91 (206)
Q Consensus 12 i~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~aSsGN~g~alA~~a~~ 91 (206)
|.+.+++|||+++++++...|.+||+|+|++|||||||+|++.+++..+.++|.+.++ +++|++|+||||+|+|++|+.
T Consensus 2 i~~~ig~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~R~a~~~v~~a~~~g~~~~g-~~vv~aSsGN~g~alA~~a~~ 80 (290)
T TIGR01138 2 IEQTVGNTPLVRLQRMGPENGSEVWLKLEGNNPAGSVKDRPALSMIVEAEKRGEIKPG-DVLIEATSGNTGIALAMIAAL 80 (290)
T ss_pred hHHhCCCCceEEccccccCCCCeEEEEEccCCCCccHHHHHHHHHHHHHHHcCCCCCC-CEEEEECCChHHHHHHHHHHH
Confidence 5678999999999999988889999999999999999999999999999999987776 579999999999999999999
Q ss_pred CCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHHHHhHHHHHHhh
Q 028618 92 KQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKG 171 (206)
Q Consensus 92 ~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~q 171 (206)
+|++|++|||++.++.|+++++.+||+|+.++.+..++++.+.+++++++.+ .+|++||+|+.++..||.+++.||++|
T Consensus 81 ~G~~~~i~~p~~~~~~k~~~~~~~GA~v~~v~~~~~~~~~~~~a~~l~~~~~-~~~~~~~~~~~~~~~~~~t~~~Ei~~q 159 (290)
T TIGR01138 81 KGYRMKLLMPDNMSQERKAAMRAYGAELILVTKEEGMEGARDLALELANRGE-GKLLDQFNNPDNPYAHYTSTGPEIWQQ 159 (290)
T ss_pred cCCeEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCC-CCCCCccCCcccHHHHhHhHHHHHHHH
Confidence 9999999999999999999999999999999875447788899999988874 468999999999877899999999999
Q ss_pred hCCCCCEEEEccCcchHHHHHHHHHHhcCCCCeEC
Q 028618 172 SGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKVR 206 (206)
Q Consensus 172 ~~~~~d~vv~~vG~Gg~~aGi~~~~k~~~p~~~vi 206 (206)
+++.+|+||+|+||||+++|++.+||+.+|++|||
T Consensus 160 ~~~~~d~iv~~vG~Gg~~~Gv~~~lk~~~~~~kvi 194 (290)
T TIGR01138 160 TGGRITHFVSSMGTTGTIMGVSRFLKEQNPPVQIV 194 (290)
T ss_pred cCCCCCEEEECCCchHHHHHHHHHHHHhCCCCEEE
Confidence 97679999999999999999999999999999986
No 9
>TIGR01136 cysKM cysteine synthases. This model discriminates cysteine synthases (EC 2.5.1.47) (both CysK and CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblamnce to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded from the seed and score below the trusted cutoff.
Probab=100.00 E-value=1.6e-50 Score=339.81 Aligned_cols=193 Identities=64% Similarity=1.038 Sum_probs=180.4
Q ss_pred hccccCCcceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCCchHHHHHHHHHHC
Q 028618 13 TELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAK 92 (206)
Q Consensus 13 ~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~aSsGN~g~alA~~a~~~ 92 (206)
...+++|||++++.|++..|.+||+|+|++|||||||+|++.+++..+.++|.+.++ ++++++|+||||+|+|++|+.+
T Consensus 2 ~~~vg~TPL~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~g-~~vv~aSsGN~g~alA~~a~~~ 80 (299)
T TIGR01136 2 EELIGNTPLVRLNRLAPGCDARVLAKLEGRNPSGSVKDRIALSMIEDAEKRGLLKPG-DTIIEATSGNTGIALAMVAAAK 80 (299)
T ss_pred ccccCCCceEEccccCCCCCceEEEEEcccCCCCCccHHHHHHHHHHHHHcCCCCCC-CEEEEeCCChHHHHHHHHHHHc
Confidence 467899999999999988889999999999999999999999999999999987766 4799999999999999999999
Q ss_pred CCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHHHHhHHHHHHhhh
Q 028618 93 QYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGS 172 (206)
Q Consensus 93 g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~q~ 172 (206)
|++|+||||+++++.|+++++.+||+|+.++.+..++++.+.+++++++.+++++++||+|+.+++.||++++.||++|+
T Consensus 81 G~~~~i~vp~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~ql 160 (299)
T TIGR01136 81 GYKLILTMPETMSLERRKLLRAYGAELILTPAEEGMKGAIDKAEELAAETNKYVMLDQFENPANPEAHYKTTGPEIWRDT 160 (299)
T ss_pred CCcEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHhhCCCeEecCCCCCchhHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999998755678999999998886578899999999988889999999999999
Q ss_pred CCCCCEEEEccCcchHHHHHHHHHHhcCCCCeEC
Q 028618 173 GGRIDALVSGIGTGGTITGAGKFLKEKNPNIKVR 206 (206)
Q Consensus 173 ~~~~d~vv~~vG~Gg~~aGi~~~~k~~~p~~~vi 206 (206)
++.||+||+|+|+||+++|++.+|++.+|++|||
T Consensus 161 ~~~~d~iv~~vG~Gg~~~G~~~~~~~~~~~~~vi 194 (299)
T TIGR01136 161 DGRIDHFVAGVGTGGTITGVGRYLKEQNPNIKIV 194 (299)
T ss_pred CCCCCEEEEcCchhHHHHHHHHHHHHhCCCCEEE
Confidence 7679999999999999999999999999999986
No 10
>TIGR01139 cysK cysteine synthase A. This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate.
Probab=100.00 E-value=6.6e-50 Score=336.00 Aligned_cols=192 Identities=64% Similarity=1.042 Sum_probs=176.5
Q ss_pred hccccCCcceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCCchHHHHHHHHHHC
Q 028618 13 TELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAK 92 (206)
Q Consensus 13 ~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~aSsGN~g~alA~~a~~~ 92 (206)
..++++|||+++++ ....|.+||+|+|++|||||||+|++.+++..+.++|.+.+| ++++++|+||||+|+|++|+++
T Consensus 2 ~~~~g~TPl~~~~~-~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~g-~~vv~aSsGN~g~alA~~a~~~ 79 (298)
T TIGR01139 2 SELIGNTPLVRLNR-IEGCNANVFVKLEGRNPSGSVKDRIALNMIWDAEKRGLLKPG-KTIVEPTSGNTGIALAMVAAAR 79 (298)
T ss_pred ccccCCCceEEccc-cCCCCceEEEEEcccCCCCcchHHHHHHHHHHHHHcCCCCCC-CEEEEeCCChhHHHHHHHHHHc
Confidence 46789999999998 556688999999999999999999999999999999987766 5699999999999999999999
Q ss_pred CCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCC-eEEcCCCCCCccHHHHHHhHHHHHHhh
Q 028618 93 QYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPN-AYMLQQFENPANPKIHYETTGPELWKG 171 (206)
Q Consensus 93 g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~g~~t~~~Ei~~q 171 (206)
|++|+||||+++++.|++.++.+||+|+.++.+..++++.+.+++++++.++ +++++||+|+.+++.||.|++.||++|
T Consensus 80 Gl~~~i~vp~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~n~~~~~~g~~t~~~Ei~~q 159 (298)
T TIGR01139 80 GYKLILTMPETMSIERRKLLKAYGAELVLTPGAEGMKGAIAKAEEIAASTPNSYFMLQQFENPANPEIHRKTTGPEIWRD 159 (298)
T ss_pred CCeEEEEeCCccCHHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHHHHhCCCcEEcccccCCcccHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999875456788889999888754 558999999998888999999999999
Q ss_pred hCCCCCEEEEccCcchHHHHHHHHHHhcCCCCeEC
Q 028618 172 SGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKVR 206 (206)
Q Consensus 172 ~~~~~d~vv~~vG~Gg~~aGi~~~~k~~~p~~~vi 206 (206)
++..||+||+|+|+||+++|++.+|++.+|++|||
T Consensus 160 ~~~~~d~vv~~vG~Gg~~~Gi~~~~~~~~~~~~vi 194 (298)
T TIGR01139 160 TDGKLDAFVAGVGTGGTITGVGEVLKEQKPNIKIV 194 (298)
T ss_pred hCCCCCEEEEecchhHhHHHHHHHHHhcCCCCEEE
Confidence 97679999999999999999999999999999986
No 11
>PRK10717 cysteine synthase A; Provisional
Probab=100.00 E-value=9.9e-50 Score=339.26 Aligned_cols=199 Identities=48% Similarity=0.804 Sum_probs=177.9
Q ss_pred chhhhhhccccCCcceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCCchHHHHH
Q 028618 7 NIAKDVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLA 86 (206)
Q Consensus 7 ~~~~~i~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~aSsGN~g~alA 86 (206)
.+++.+...+++|||++++++++..|++||+|+|++||+||||+|++.+++..++++|.+.++ .+||++|+||||+|+|
T Consensus 2 ~~~~~~~~~~g~TPL~~~~~l~~~~g~~i~~K~E~~nptGS~K~Rga~~~v~~a~~~g~~~~g-~~vv~aSsGN~g~alA 80 (330)
T PRK10717 2 KIFEDVSDTIGNTPLIRLNRASEATGCEILGKAEFLNPGGSVKDRAALNIIWDAEKRGLLKPG-GTIVEGTAGNTGIGLA 80 (330)
T ss_pred chhhhHHHHhCCCceEEccccCCCCCCeEEEEeeccCCCCCchHHHHHHHHHHHHHcCCCCCC-CEEEEeCCcHHHHHHH
Confidence 357889999999999999999998899999999999999999999999999999999987776 5799999999999999
Q ss_pred HHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCC------ChHHHHHHHHHHHHhC-CCeEEcCCCCCCccHHH
Q 028618 87 FMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAK------GMKGAVQKAEEILAKT-PNAYMLQQFENPANPKI 159 (206)
Q Consensus 87 ~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~------~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~~~~ 159 (206)
++|+++|++|+||||+.+++.|+++++.+||+|+.++.+. ..+.+.+.++++.++. .+++|++||+||.+++.
T Consensus 81 ~~a~~~G~~~~vv~p~~~~~~k~~~~~~~GA~V~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (330)
T PRK10717 81 LVAAARGYKTVIVMPETQSQEKKDLLRALGAELVLVPAAPYANPNNYVKGAGRLAEELVASEPNGAIWANQFDNPANREA 160 (330)
T ss_pred HHHHHcCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCcccccccchHHHHHHHHHHHHhhCCCCeEecCCCCChhhHHH
Confidence 9999999999999999999999999999999999999741 1222344444554443 27899999999998778
Q ss_pred HHHhHHHHHHhhhCCCCCEEEEccCcchHHHHHHHHHHhcCCCCeEC
Q 028618 160 HYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKVR 206 (206)
Q Consensus 160 g~~t~~~Ei~~q~~~~~d~vv~~vG~Gg~~aGi~~~~k~~~p~~~vi 206 (206)
||.|++.||++|++..+|+||+|+|+||+++|++.+||+.+|++|||
T Consensus 161 g~~t~a~Ei~~ql~~~~d~iv~~vG~GG~~~Gi~~~~k~~~~~~~vi 207 (330)
T PRK10717 161 HYETTGPEIWEQTDGKVDGFVCAVGTGGTLAGVSRYLKETNPKVKIV 207 (330)
T ss_pred HHHhHHHHHHHhcCCCCCEEEEecCchHHHHHHHHHHHHhCCCCEEE
Confidence 99999999999997679999999999999999999999999999986
No 12
>PRK07476 eutB threonine dehydratase; Provisional
Probab=100.00 E-value=8e-50 Score=338.71 Aligned_cols=193 Identities=22% Similarity=0.297 Sum_probs=179.9
Q ss_pred ccchhhhhhccccCCcceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCCchHHH
Q 028618 5 SSNIAKDVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIG 84 (206)
Q Consensus 5 ~~~~~~~i~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~aSsGN~g~a 84 (206)
....+.+|...+++|||++++++++..|.+||+|+|++||+||||+|++.+++..+.+++.. ++||++|+||||+|
T Consensus 6 i~~a~~~i~~~i~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~K~R~a~~~i~~a~~~~~~----~gvv~aSsGN~g~a 81 (322)
T PRK07476 6 IYRARRRIAGRVRRTPLVASASLSARAGVPVWLKLETLQPTGSFKLRGATNALLSLSAQERA----RGVVTASTGNHGRA 81 (322)
T ss_pred HHHHHHHHhCCCCCCCceechhhHHhhCCeEEEEEccCCCCCCchHHHHHHHHHhhhhhhhC----CeEEEECCChHHHH
Confidence 34578899999999999999999988899999999999999999999999999999988862 45999999999999
Q ss_pred HHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHHHHhH
Q 028618 85 LAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETT 164 (206)
Q Consensus 85 lA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~ 164 (206)
+|++|+.+|++|++|||+++++.|+++++.+||+|+.++.+ ++++.+.+.+++++. +++|++|++||.+ ..||+|+
T Consensus 82 lA~~a~~~G~~~~i~vp~~~~~~k~~~~~~~GA~V~~~~~~--~~~~~~~a~~~~~~~-g~~~~~~~~n~~~-~~g~~t~ 157 (322)
T PRK07476 82 LAYAARALGIRATICMSRLVPANKVDAIRALGAEVRIVGRS--QDDAQAEVERLVREE-GLTMVPPFDDPRI-IAGQGTI 157 (322)
T ss_pred HHHHHHHhCCCEEEEeCCCCCHHHHHHHHHcCCEEEEECCC--HHHHHHHHHHHHHhc-CCEEeCCCCCcce-eechhHH
Confidence 99999999999999999999999999999999999999976 778889999998886 7899999999998 6899999
Q ss_pred HHHHHhhhCCCCCEEEEccCcchHHHHHHHHHHhcCCCCeEC
Q 028618 165 GPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKVR 206 (206)
Q Consensus 165 ~~Ei~~q~~~~~d~vv~~vG~Gg~~aGi~~~~k~~~p~~~vi 206 (206)
+.||++|++ .+|+||+|+|+||+++|++.+||+.+|++|||
T Consensus 158 ~~Ei~~Q~~-~~d~iv~~vG~GG~~~Gv~~~~k~~~~~~~vi 198 (322)
T PRK07476 158 GLEILEALP-DVATVLVPLSGGGLASGVAAAVKAIRPAIRVI 198 (322)
T ss_pred HHHHHHhCc-CCCEEEEEcChHHHHHHHHHHHHHhCCCCEEE
Confidence 999999994 68999999999999999999999999999986
No 13
>PRK08526 threonine dehydratase; Provisional
Probab=100.00 E-value=9.7e-50 Score=346.37 Aligned_cols=193 Identities=24% Similarity=0.312 Sum_probs=179.5
Q ss_pred ccchhhhhhccccCCcceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCCchHHH
Q 028618 5 SSNIAKDVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIG 84 (206)
Q Consensus 5 ~~~~~~~i~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~aSsGN~g~a 84 (206)
....++++.+.+++|||+++++|++..|++||+|+|++|||||||+|+|.+.+..+.+++. .++||++|+||||++
T Consensus 7 i~~a~~~i~~~i~~TPl~~~~~Ls~~~g~~iylK~E~lqptGSfK~RgA~n~i~~l~~~~~----~~gVV~aSaGNhg~a 82 (403)
T PRK08526 7 IYQAKQRISGFVNKTPFAYAPFLSKISGAEVYLKKENLQITGAYKIRGAYNKIANLSEEQK----QHGVIAASAGNHAQG 82 (403)
T ss_pred HHHHHHHHhCcCCCCCccchHHHHHHhCCeEEEEecCCCCCCCCHHHHHHHHHHhccHhhc----CCEEEEECccHHHHH
Confidence 3456778999999999999999999889999999999999999999999999998876543 257999999999999
Q ss_pred HHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHHHHhH
Q 028618 85 LAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETT 164 (206)
Q Consensus 85 lA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~ 164 (206)
+|++|+++|++|+||||++++..|++.++.|||+|+.++.+ ++++.+.+.+++++. +++|++||+|+.+ +.||+|+
T Consensus 83 vA~aa~~~Gi~~~IvmP~~~p~~k~~~~r~~GA~Vv~~g~~--~~~a~~~a~~~a~~~-g~~~v~p~~~~~~-i~G~gti 158 (403)
T PRK08526 83 VAISAKKFGIKAVIVMPEATPLLKVSGTKALGAEVILKGDN--YDEAYAFALEYAKEN-NLTFIHPFEDEEV-MAGQGTI 158 (403)
T ss_pred HHHHHHHcCCCEEEEEcCCCCHHHHHHHHhCCCEEEEECCC--HHHHHHHHHHHHHhc-CCEeeCCCCCHHH-HhhhHHH
Confidence 99999999999999999999999999999999999999876 889999999998886 7899999999987 7899999
Q ss_pred HHHHHhhhCCCCCEEEEccCcchHHHHHHHHHHhcCCCCeEC
Q 028618 165 GPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKVR 206 (206)
Q Consensus 165 ~~Ei~~q~~~~~d~vv~~vG~Gg~~aGi~~~~k~~~p~~~vi 206 (206)
+.||++|+ +.+|+||+|+|+||+++|++.++|+.+|++|||
T Consensus 159 a~EI~eq~-~~~D~vvvpvGgGGl~aGia~~~k~~~p~~kvi 199 (403)
T PRK08526 159 ALEMLDEI-SDLDMVVVPVGGGGLISGIASAAKQINPNIKII 199 (403)
T ss_pred HHHHHHhc-CCCCEEEEecChHHHHHHHHHHHHHhCCCCEEE
Confidence 99999999 479999999999999999999999999999986
No 14
>PRK08198 threonine dehydratase; Provisional
Probab=100.00 E-value=1.8e-49 Score=346.00 Aligned_cols=193 Identities=25% Similarity=0.385 Sum_probs=179.5
Q ss_pred ccchhhhhhccccCCcceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCCchHHH
Q 028618 5 SSNIAKDVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIG 84 (206)
Q Consensus 5 ~~~~~~~i~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~aSsGN~g~a 84 (206)
....++++.+.+++|||++++++++..|++||+|+|++|||||||+|+|.+++..+.+++. .++||++|+||||++
T Consensus 9 i~~a~~~i~~~i~~TPl~~~~~ls~~~g~~i~~K~E~~nptGS~K~R~a~~~i~~~~~~~~----~~~vv~aSsGN~g~a 84 (404)
T PRK08198 9 IEEARERLKGVVRRTPLEYSRTLSELTGAEVYLKCENLQRTGSFKIRGAYNKIASLSEEER----ARGVVAASAGNHAQG 84 (404)
T ss_pred HHHHHHHHhccCCCCCceehhhHHHHhCCEEEEEECCCCCCCCCHHHHHHHHHHhccHhhc----CCEEEEECCCHHHHH
Confidence 3456788999999999999999998889999999999999999999999999998875554 268999999999999
Q ss_pred HHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHHHHhH
Q 028618 85 LAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETT 164 (206)
Q Consensus 85 lA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~ 164 (206)
+|++|+.+|++|+||||++++..|+++++.+||+|+.++.+ ++++.+.+++++++. +++|++||+|+.+ ..||+|+
T Consensus 85 lA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~Vi~~~~~--~~~~~~~a~~~~~~~-g~~~~~~~~~~~~-~~g~~t~ 160 (404)
T PRK08198 85 VAYAASLLGIKATIVMPETAPLSKVKATRSYGAEVVLHGDV--YDEALAKAQELAEET-GATFVHPFDDPDV-IAGQGTI 160 (404)
T ss_pred HHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEECCC--HHHHHHHHHHHHHhc-CCEecCCCCCccH-HHHHHHH
Confidence 99999999999999999999999999999999999999876 789999999998886 8899999999998 6899999
Q ss_pred HHHHHhhhCCCCCEEEEccCcchHHHHHHHHHHhcCCCCeEC
Q 028618 165 GPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKVR 206 (206)
Q Consensus 165 ~~Ei~~q~~~~~d~vv~~vG~Gg~~aGi~~~~k~~~p~~~vi 206 (206)
|.||++|+ +++|+||+|+|+||+++|++.+||+.+|++|||
T Consensus 161 a~EI~~q~-~~~d~vv~~vG~GG~~~Gi~~~~k~~~p~~kii 201 (404)
T PRK08198 161 GLEILEDL-PDVDTVVVPIGGGGLISGVATAVKALRPEVRVI 201 (404)
T ss_pred HHHHHHhC-CCCCEEEEEeCHhHHHHHHHHHHHHhCCCCEEE
Confidence 99999999 479999999999999999999999999999986
No 15
>PLN02970 serine racemase
Probab=100.00 E-value=3.9e-49 Score=335.17 Aligned_cols=190 Identities=18% Similarity=0.227 Sum_probs=176.0
Q ss_pred hhhhhhccccCCcceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCCchHHHHHH
Q 028618 8 IAKDVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAF 87 (206)
Q Consensus 8 ~~~~i~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~aSsGN~g~alA~ 87 (206)
.++.+...+++|||++++++++..|++||+|+|++|||||||||++.+++..+.+++. .++||++|+||||.|+|+
T Consensus 17 a~~~i~~~i~~TPL~~~~~l~~~~g~~i~~K~E~~nptGSfKdRga~~~i~~~~~~~~----~~~vv~aSsGN~g~alA~ 92 (328)
T PLN02970 17 ARKRIAPFIHRTPVLTSSSLDALAGRSLFFKCECFQKGGAFKFRGACNAIFSLSDDQA----EKGVVTHSSGNHAAALAL 92 (328)
T ss_pred HHHHHhCcCCCCCeeechhhHHhhCCeEEEEecCCCCCCCcHHHHHHHHHHHhhHhhc----CCeEEEECCcHHHHHHHH
Confidence 4567888999999999999998888999999999999999999999999999875554 257999999999999999
Q ss_pred HHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHHHHhHHHH
Q 028618 88 MAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPE 167 (206)
Q Consensus 88 ~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~E 167 (206)
+|+.+|++|+||||+++++.|+++|+.+||+|+.++.+ ++++.+.+++++++ ++++|++||+|+.+ ..||+|+++|
T Consensus 93 ~a~~~G~~~~ivvp~~~~~~k~~~~~~~GA~Vi~~~~~--~~~~~~~a~~la~~-~g~~~~~~~~n~~~-~~g~~t~g~E 168 (328)
T PLN02970 93 AAKLRGIPAYIVVPKNAPACKVDAVIRYGGIITWCEPT--VESREAVAARVQQE-TGAVLIHPYNDGRV-ISGQGTIALE 168 (328)
T ss_pred HHHHcCCCEEEEECCCCCHHHHHHHHhcCCEEEEeCCC--HHHHHHHHHHHHHh-cCCEEeCCCCCcch-hhehHHHHHH
Confidence 99999999999999999999999999999999999986 77888889999887 48999999999998 5799999999
Q ss_pred HHhhhCCCCCEEEEccCcchHHHHHHHHHHhcCCCCeEC
Q 028618 168 LWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKVR 206 (206)
Q Consensus 168 i~~q~~~~~d~vv~~vG~Gg~~aGi~~~~k~~~p~~~vi 206 (206)
|++|++ .||+||+|+|+||+++|++.+||+.+|++|||
T Consensus 169 i~~ql~-~~D~vv~~vG~GG~~~Gi~~~lk~~~~~~kvi 206 (328)
T PLN02970 169 FLEQVP-ELDVIIVPISGGGLISGIALAAKAIKPSIKII 206 (328)
T ss_pred HHHhcc-CCCEEEEeeCchHHHHHHHHHHHhcCCCCEEE
Confidence 999995 69999999999999999999999999999986
No 16
>PRK12483 threonine dehydratase; Reviewed
Probab=100.00 E-value=4.1e-49 Score=350.16 Aligned_cols=188 Identities=26% Similarity=0.362 Sum_probs=175.4
Q ss_pred hhhccccCCcceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCCchHHHHHHHHH
Q 028618 11 DVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAA 90 (206)
Q Consensus 11 ~i~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~aSsGN~g~alA~~a~ 90 (206)
+|.+.+.+|||+++++|++..|++||+|+|++|||||||+|+|.+++..+.++.. .++||++|+||||+++|++|+
T Consensus 30 ~i~~~v~~TPL~~~~~Ls~~~g~~IylK~E~lqptGSfK~RGA~n~i~~l~~~~~----~~GVV~aSaGNha~gvA~aA~ 105 (521)
T PRK12483 30 RVYDVARETPLQRAPNLSARLGNQVLLKREDLQPVFSFKIRGAYNKMARLPAEQL----ARGVITASAGNHAQGVALAAA 105 (521)
T ss_pred HHhhhcCCCCeeEchhhhHhhCCEEEEEEcCCCCCCchHHHHHHHHHHHhHHHHh----cCcEEEECCCHHHHHHHHHHH
Confidence 5778899999999999999999999999999999999999999999988764332 146999999999999999999
Q ss_pred HCCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHHHHhHHHHHHh
Q 028618 91 AKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWK 170 (206)
Q Consensus 91 ~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~ 170 (206)
.+|++|+||||+++++.|++.++.+||+|+.++.+ ++++.+.+.+++++. +++|++||+|+.+ ++||+|++.||++
T Consensus 106 ~lGi~~~IvmP~~tp~~Kv~~~r~~GAeVil~g~~--~d~a~~~A~~la~e~-g~~~v~pfdd~~v-iaGqgTig~EI~e 181 (521)
T PRK12483 106 RLGVKAVIVMPRTTPQLKVDGVRAHGGEVVLHGES--FPDALAHALKLAEEE-GLTFVPPFDDPDV-IAGQGTVAMEILR 181 (521)
T ss_pred HhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCC--HHHHHHHHHHHHHhc-CCeeeCCCCChHH-HHHHHHHHHHHHH
Confidence 99999999999999999999999999999999976 889999999999886 7899999999998 6899999999999
Q ss_pred hhCCCCCEEEEccCcchHHHHHHHHHHhcCCCCeEC
Q 028618 171 GSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKVR 206 (206)
Q Consensus 171 q~~~~~d~vv~~vG~Gg~~aGi~~~~k~~~p~~~vi 206 (206)
|+++.||+||+|+|+||+++|++.++|+.+|++|||
T Consensus 182 Q~~~~~D~VvvpvGgGGliaGia~~~K~~~p~vkVI 217 (521)
T PRK12483 182 QHPGPLDAIFVPVGGGGLIAGIAAYVKYVRPEIKVI 217 (521)
T ss_pred HhCCCCCEEEEecCccHHHHHHHHHHHHhCCCCEEE
Confidence 996679999999999999999999999999999996
No 17
>PLN02356 phosphateglycerate kinase
Probab=100.00 E-value=1.2e-48 Score=338.25 Aligned_cols=198 Identities=38% Similarity=0.634 Sum_probs=172.1
Q ss_pred hhhhhhccccCCcceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCCchHHHHHH
Q 028618 8 IAKDVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAF 87 (206)
Q Consensus 8 ~~~~i~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~aSsGN~g~alA~ 87 (206)
..+.+.+.+++|||+++++++...|++||+|+|++||+||||||++.+++..+.++|.+.++ ..|+++||||||+|+|+
T Consensus 43 ~~~~~~~~ig~TPLv~~~~l~~~~g~~v~~KlE~~nPtGS~KdR~A~~~i~~a~~~g~~~~~-g~VveaSSGN~g~alA~ 121 (423)
T PLN02356 43 PRNGLIDAIGNTPLIRINSLSEATGCEILGKCEFLNPGGSVKDRVAVKIIEEALESGQLFPG-GVVTEGSAGSTAISLAT 121 (423)
T ss_pred hhhhHHhhcCCCceEECcccccccCCEEEEEeccCCCCCCHHHHHHHHHHHHHHhCCccCCC-CEEEEeCCHHHHHHHHH
Confidence 45668889999999999999888889999999999999999999999999999999987666 46788999999999999
Q ss_pred HHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCC-----CCh-HHHH---HHHHHHHHh-----------------
Q 028618 88 MAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPA-----KGM-KGAV---QKAEEILAK----------------- 141 (206)
Q Consensus 88 ~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~-----~~~-~~~~---~~a~~~~~~----------------- 141 (206)
+|+.+|++|++|||+++++.|+++++.+||+|+.++.. ..+ ..+. +.+.+++++
T Consensus 122 ~aa~~G~~~~ivvP~~~s~~K~~~ir~~GAeVi~v~~~~~~~~~~~~~~a~~~~~~a~e~a~~~~~~~~~~~~~~~~~~~ 201 (423)
T PLN02356 122 VAPAYGCKCHVVIPDDVAIEKSQILEALGATVERVRPVSITHKDHYVNIARRRALEANELASKRRKGSETDGIHLEKTNG 201 (423)
T ss_pred HHHHcCCcEEEEECCCCcHHHHHHHHHcCCEEEEECCccCCCcchhHHHHHHHHHHHHHHHHHhhhcccccccccccccc
Confidence 99999999999999999999999999999999999641 112 1111 234444433
Q ss_pred ---------------CCCeEEcCCCCCCccHHHHHHhHHHHHHhhhCCCCCEEEEccCcchHHHHHHHHHHhcCCCCeEC
Q 028618 142 ---------------TPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKVR 206 (206)
Q Consensus 142 ---------------~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~q~~~~~d~vv~~vG~Gg~~aGi~~~~k~~~p~~~vi 206 (206)
.++.+|++||+|+.++..|+..+|+||++|+++.+|+||+|+||||+++|++++||+.+|++|||
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~q~~n~~n~~ahg~gTg~EI~eQl~g~~D~vVv~vGtGGti~Gva~~lK~~~P~vkVi 281 (423)
T PLN02356 202 CISEEEKENSLFSSSCTGGFFADQFENLANFRAHYEGTGPEIWEQTQGNLDAFVAAAGTGGTLAGVSRFLQEKNPNIKCF 281 (423)
T ss_pred ccccccccccccccCCCCcEecCccCCcchHHHHHhhHHHHHHHhcCCCCCEEEeCCCchHHHHHHHHHHHHhCCCCEEE
Confidence 14778999999999988876667999999997789999999999999999999999999999986
No 18
>PRK06382 threonine dehydratase; Provisional
Probab=100.00 E-value=5.8e-49 Score=342.62 Aligned_cols=191 Identities=24% Similarity=0.305 Sum_probs=178.0
Q ss_pred chhhhhhccccCCcceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCCchHHHHH
Q 028618 7 NIAKDVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLA 86 (206)
Q Consensus 7 ~~~~~i~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~aSsGN~g~alA 86 (206)
..++++.+.+++|||++++.|++..|++||+|+|++|||||||+|++.+++..+.+.+. .++||++|+||||+|+|
T Consensus 14 ~a~~~~~~~i~~TPl~~~~~ls~~~g~~v~~K~E~~nptGSfK~Rga~~~i~~~~~~~~----~~gvv~aSsGN~g~a~A 89 (406)
T PRK06382 14 YAKSYLEGYLNRTPLIHSTTFGDEYGGDIYFKLENFQKTGSFKSRGAVFKFSKLSEDEL----RNGVITASAGNHAQGVA 89 (406)
T ss_pred HHHHHHhCcCCCCCeeEhhhhHHHhCCEEEEEecCCCCCCCCHHHHHHHHHHhcchhcc----CCeEEEECCCHHHHHHH
Confidence 46678999999999999999999889999999999999999999999999988876553 24699999999999999
Q ss_pred HHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHHHHhHHH
Q 028618 87 FMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGP 166 (206)
Q Consensus 87 ~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~ 166 (206)
++|+.+|++|+||||+++++.|++.++.+||+|+.++.+ ++++.+.+++++++. +++|++||+|+.+ +.||+|+++
T Consensus 90 ~aa~~~G~~~~ivmp~~~~~~k~~~~~~~GA~Vv~~~~~--~~~a~~~a~~la~~~-~~~~v~~~~~~~~-i~g~~t~~~ 165 (406)
T PRK06382 90 YAASINGIDAKIVMPEYTIPQKVNAVEAYGAHVILTGRD--YDEAHRYADKIAMDE-NRTFIEAFNDRWV-ISGQGTIGL 165 (406)
T ss_pred HHHHHcCCCEEEEEcCCCHHHHHHHHHHcCCEEEEECCC--HHHHHHHHHHHHHhc-CCEecCccCChHH-HHHHHHHHH
Confidence 999999999999999999999999999999999999986 789999999999886 7899999999998 689999999
Q ss_pred HHHhhhCCCCCEEEEccCcchHHHHHHHHHHhcCCCCeEC
Q 028618 167 ELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKVR 206 (206)
Q Consensus 167 Ei~~q~~~~~d~vv~~vG~Gg~~aGi~~~~k~~~p~~~vi 206 (206)
||++|+ +.||+||+|+|+||+++|++.++|+.+|++|||
T Consensus 166 Ei~eq~-~~~d~vvvpvG~GG~~~Gv~~~~k~~~p~~~vi 204 (406)
T PRK06382 166 EIMEDL-PDLDQIIVPVGGGGLISGIALAAKHINPNVKII 204 (406)
T ss_pred HHHHhc-CCCCEEEEeeChHHHHHHHHHHHHHhCCCCEEE
Confidence 999999 479999999999999999999999999999986
No 19
>TIGR02991 ectoine_eutB ectoine utilization protein EutB. Members of this protein family are EutB, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. Members of this family resemble threonine dehydratases.
Probab=100.00 E-value=1e-48 Score=331.16 Aligned_cols=194 Identities=22% Similarity=0.298 Sum_probs=178.0
Q ss_pred cccchhhhhhccccCCcceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCCchHH
Q 028618 4 ESSNIAKDVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGI 83 (206)
Q Consensus 4 ~~~~~~~~i~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~aSsGN~g~ 83 (206)
+....++++.+.+++|||++++++++..|.+||+|+|++|||||||+|++.+++..+.+... ..++|++|+||||+
T Consensus 5 ~i~~a~~~i~~~i~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~K~R~a~~~i~~~~~~~~----~~~vv~aSsGN~g~ 80 (317)
T TIGR02991 5 DIERAAARISGRVEETPLVESPSLSELCGVPVHLKLEHRQTTGSFKLRGATNAVLSLSDTQR----AAGVVAASTGNHGR 80 (317)
T ss_pred HHHHHHHHHhCcCCCCCceechhhHHhhCCeEEEEeccCCCCCCcHHHHHHHHHHhhhHhcc----CCeEEEECCCHHHH
Confidence 44567889999999999999999998888999999999999999999999999998764322 14799999999999
Q ss_pred HHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHHHHh
Q 028618 84 GLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYET 163 (206)
Q Consensus 84 alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t 163 (206)
|+|++|+++|++|++|||+++++.|++.++.+||+|+.++.+ ++++.+.+++++++. +++|++||+|+++ ..||+|
T Consensus 81 alA~~a~~~G~~~~v~~p~~~~~~k~~~~~~~GA~V~~~~~~--~~~~~~~a~~~~~~~-g~~~~~~~~n~~~-~~g~~t 156 (317)
T TIGR02991 81 ALAYAAAEEGVRATICMSELVPQNKVDEIRRLGAEVRIVGRS--QDDAQEEVERLVADR-GLTMLPPFDHPDI-VAGQGT 156 (317)
T ss_pred HHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHcCCEEEEeCCC--HHHHHHHHHHHHHhc-CCEeeCCCCChHH-HhhHHH
Confidence 999999999999999999999999999999999999999986 778888899998876 7899999999998 689999
Q ss_pred HHHHHHhhhCCCCCEEEEccCcchHHHHHHHHHHhcCCCCeEC
Q 028618 164 TGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKVR 206 (206)
Q Consensus 164 ~~~Ei~~q~~~~~d~vv~~vG~Gg~~aGi~~~~k~~~p~~~vi 206 (206)
+++||++|++ .+|+||+|+|+||+++|++++||+++|++|||
T Consensus 157 ~a~Ei~~q~~-~~d~vvv~~G~Gg~~~Gi~~~~k~~~p~~~vi 198 (317)
T TIGR02991 157 LGLEVVEQMP-DLATVLVPLSGGGLASGVAMAVKAARPDTRVI 198 (317)
T ss_pred HHHHHHHhCC-CCCEEEEEcChhHHHHHHHHHHHHhCCCCEEE
Confidence 9999999994 68999999999999999999999999999986
No 20
>cd01561 CBS_like CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase. CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine.
Probab=100.00 E-value=5.1e-48 Score=323.53 Aligned_cols=189 Identities=62% Similarity=1.008 Sum_probs=173.6
Q ss_pred cCCcceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCCchHHHHHHHHHHCCCcE
Q 028618 17 GNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRL 96 (206)
Q Consensus 17 ~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~aSsGN~g~alA~~a~~~g~~~ 96 (206)
++|||++++++++..|++||+|+|++||+||||+|++.+++..+.++|...++ ++|+++|+||||+|+|++|+++|++|
T Consensus 1 g~TPl~~~~~l~~~~g~~i~~K~E~~~ptgS~K~R~a~~~l~~a~~~g~~~~~-~~vv~~SsGN~g~alA~~a~~~G~~~ 79 (291)
T cd01561 1 GNTPLVRLNRLSPGTGAEIYAKLEFFNPGGSVKDRIALYMIEDAEKRGLLKPG-TTIIEPTSGNTGIGLAMVAAAKGYRF 79 (291)
T ss_pred CCCCEEEccccCCCCCCeEEEEecccCCCCcchHHHHHHHHHHHHHcCCCCCC-CEEEEeCCChHHHHHHHHHHHcCCeE
Confidence 58999999999988899999999999999999999999999999999976555 57999999999999999999999999
Q ss_pred EEEeCCCCCHHHHHHHHHcCCEEEEeCCCC--ChHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHHHHhHHHHHHhhhCC
Q 028618 97 IITMPASMSLERRIILRAFGAELVLTDPAK--GMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGG 174 (206)
Q Consensus 97 ~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~q~~~ 174 (206)
++|||.++++.|+++++.+||+|+.++.+. ..+++.+.+++++++.++++|++||+||.+++.+++|++.||.+|++.
T Consensus 80 ~i~vp~~~~~~k~~~~~~~Ga~v~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~p~~~~g~~~t~~~Ei~~ql~~ 159 (291)
T cd01561 80 IIVMPETMSEEKRKLLRALGAEVILTPEAEADGMKGAIAKARELAAETPNAFWLNQFENPANPEAHYETTAPEIWEQLDG 159 (291)
T ss_pred EEEECCCCCHHHHHHHHHcCCEEEEeCCCCcCCHHHHHHHHHHHHhhCCCcEEecCCCCchHHHHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999999873 237888889999888768999999999999654445999999999976
Q ss_pred CCCEEEEccCcchHHHHHHHHHHhcCCCCeEC
Q 028618 175 RIDALVSGIGTGGTITGAGKFLKEKNPNIKVR 206 (206)
Q Consensus 175 ~~d~vv~~vG~Gg~~aGi~~~~k~~~p~~~vi 206 (206)
.||+||+|+|+||+++|++.+|++.+|+++||
T Consensus 160 ~~d~vv~~~G~Gg~~~Gi~~~~~~~~~~~~vi 191 (291)
T cd01561 160 KVDAFVAGVGTGGTITGVARYLKEKNPNVRIV 191 (291)
T ss_pred CCCEEEEeCChHHHHHHHHHHHHHhCCCCEEE
Confidence 89999999999999999999999999999986
No 21
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=100.00 E-value=2.8e-48 Score=343.02 Aligned_cols=197 Identities=47% Similarity=0.798 Sum_probs=179.2
Q ss_pred hhhhhccccCCcceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCCchHHHHHHH
Q 028618 9 AKDVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFM 88 (206)
Q Consensus 9 ~~~i~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~aSsGN~g~alA~~ 88 (206)
++.+.+.+++|||++++++++..|++||+|+|++||+||||+|+|.+++.++.++|.+.+| +++|++|+||||+|+|++
T Consensus 2 ~~~~~~~~~~TPl~~~~~l~~~~~~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~~~~g-~~vv~~ssGN~g~alA~~ 80 (454)
T TIGR01137 2 RDNIIDLIGNTPLVRLNKVSKGIKCELLAKCEFFNPGGSVKDRIALRMIEDAEASGRLKPG-DTIIEPTSGNTGIGLALV 80 (454)
T ss_pred ccchHHhcCCCceEEccccCCCCCceEEEEEhhcCCCcchHHHHHHHHHHHHHHcCCCCCC-CEEEEeCCcHHHHHHHHH
Confidence 4567888999999999999988888999999999999999999999999999999988877 579999999999999999
Q ss_pred HHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChH---HHHHHHHHHHHhCCCeEEcCCCCCCccHHHHHHhHH
Q 028618 89 AAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMK---GAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTG 165 (206)
Q Consensus 89 a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~ 165 (206)
|+.+|++|++|||+++++.|+++++.+||+|+.++.+..++ ...+.+.+++++.++.+|++||+|+.++..||.+++
T Consensus 81 a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~t~~ 160 (454)
T TIGR01137 81 AAIKGYKCIIVLPEKMSNEKVDVLKALGAEIVRTPTAAAFDSPESHIGVAKRLVREIPGAHILDQYNNPSNPLAHYDGTG 160 (454)
T ss_pred HHHcCCeEEEEeCCCcCHHHHHHHHHCCCEEEEcCCccCCCchHHHHHHHHHHHHhCCCcEecccCCChhhHHHHHHhhH
Confidence 99999999999999999999999999999999998642122 235667778777556788999999999878999999
Q ss_pred HHHHhhhCCCCCEEEEccCcchHHHHHHHHHHhcCCCCeEC
Q 028618 166 PELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKVR 206 (206)
Q Consensus 166 ~Ei~~q~~~~~d~vv~~vG~Gg~~aGi~~~~k~~~p~~~vi 206 (206)
.||++|+++.||+||+|+|||||++|++.+||+.+|++|||
T Consensus 161 ~Ei~~q~~~~~d~vv~~vG~Gg~~~G~~~~~~~~~~~~~vi 201 (454)
T TIGR01137 161 PEILEQCEGKLDMFVAGAGTGGTITGIARYLKESNPKCRIV 201 (454)
T ss_pred HHHHHHhCCCCCEEEEecCchHHHHHHHHHHHhhCCCCEEE
Confidence 99999997679999999999999999999999999999986
No 22
>PRK07048 serine/threonine dehydratase; Validated
Probab=100.00 E-value=1.8e-48 Score=330.40 Aligned_cols=193 Identities=20% Similarity=0.264 Sum_probs=177.3
Q ss_pred ccchhhhhhccccCCcceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCCchHHH
Q 028618 5 SSNIAKDVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIG 84 (206)
Q Consensus 5 ~~~~~~~i~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~aSsGN~g~a 84 (206)
....++++..++++|||++++++++..|++||+|+|++|||||||+|++.+++.++.+++. .++||++|+||||+|
T Consensus 11 i~~a~~~i~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~R~a~~~i~~~~~~~~----~~~vv~aSsGN~g~a 86 (321)
T PRK07048 11 VAAAAARLAGVAHRTPVLTSRTADARTGAQVFFKCENFQRMGAFKFRGAYNALSQFSPEQR----RAGVVTFSSGNHAQA 86 (321)
T ss_pred HHHHHHHhhCCCCCCCCccchhhHHhcCCeEEEEeccCCCCCCeeHHHHHHHHHhhhHhhc----CCcEEEeCCCHHHHH
Confidence 3456788999999999999999988888999999999999999999999999998875432 157999999999999
Q ss_pred HHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHHHHhH
Q 028618 85 LAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETT 164 (206)
Q Consensus 85 lA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~ 164 (206)
+|++|+.+|++|++|||+++++.|+++++.+||+|+.++.+ ++++.+.+++++++. +++|++||+|+++ ..||+|+
T Consensus 87 lA~~a~~~G~~~~vvvp~~~~~~k~~~~~~~GAeV~~~~~~--~~~~~~~a~~l~~~~-g~~~~~~~~~~~~-~~g~~t~ 162 (321)
T PRK07048 87 IALSARLLGIPATIVMPQDAPAAKVAATRGYGGEVVTYDRY--TEDREEIGRRLAEER-GLTLIPPYDHPHV-IAGQGTA 162 (321)
T ss_pred HHHHHHHcCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCC--HHHHHHHHHHHHHhc-CCEEECCCCCcch-hhccchH
Confidence 99999999999999999999999999999999999999976 678888899998886 7899999999988 6899999
Q ss_pred HHHHHhhhCCCCCEEEEccCcchHHHHHHHHHHhcCCCCeEC
Q 028618 165 GPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKVR 206 (206)
Q Consensus 165 ~~Ei~~q~~~~~d~vv~~vG~Gg~~aGi~~~~k~~~p~~~vi 206 (206)
++||++|++ .||+||+|+|+||+++|++.++|+.+|+++||
T Consensus 163 ~~EI~~q~~-~~D~vv~~vGtGG~~~Gi~~~~k~~~~~~~vi 203 (321)
T PRK07048 163 AKELFEEVG-PLDALFVCLGGGGLLSGCALAARALSPGCKVY 203 (321)
T ss_pred HHHHHhhcC-CCCEEEEecChhHHHHHHHHHHHHhCCCCEEE
Confidence 999999995 79999999999999999999999999999986
No 23
>PRK06110 hypothetical protein; Provisional
Probab=100.00 E-value=2.3e-48 Score=329.80 Aligned_cols=192 Identities=23% Similarity=0.268 Sum_probs=176.3
Q ss_pred cchhhhhhccccCCcceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCCchHHHH
Q 028618 6 SNIAKDVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGL 85 (206)
Q Consensus 6 ~~~~~~i~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~aSsGN~g~al 85 (206)
...++++...+++|||++++++++.+|.+||+|+|++||+||||+|++.+++..+.+++... ..+|++|+||||+|+
T Consensus 9 ~~a~~~i~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~Rga~~~l~~a~~~~~~~---~~vv~aSsGN~g~al 85 (322)
T PRK06110 9 EAAAAVVYAAMPPTPQYRWPLLAERLGCEVWVKHENHTPTGAFKVRGGLVYFDRLARRGPRV---RGVISATRGNHGQSV 85 (322)
T ss_pred HHHHHHHhCcCcCCCcccchhHHHHhCCeEEEEeccCCCcCCcHHHHHHHHHHHhhhhcCCC---ceEEEECCCHHHHHH
Confidence 44677889999999999999999888899999999999999999999999999998876543 469999999999999
Q ss_pred HHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHHHHhHH
Q 028618 86 AFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTG 165 (206)
Q Consensus 86 A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~ 165 (206)
|++|+++|++|+||||.+.++.|+++++.+||+|+.++.+ ++++.+.+.+++++. +++|+++| |+.+ ..||.|++
T Consensus 86 A~~a~~~G~~~~ivvp~~~~~~k~~~i~~~GA~V~~~~~~--~~~~~~~a~~~~~~~-~~~~~~~~-~~~~-~~G~~t~~ 160 (322)
T PRK06110 86 AFAARRHGLAATIVVPHGNSVEKNAAMRALGAELIEHGED--FQAAREEAARLAAER-GLHMVPSF-HPDL-VRGVATYA 160 (322)
T ss_pred HHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCC--HHHHHHHHHHHHHhc-CCEEcCCC-CChH-HhccchHH
Confidence 9999999999999999999999999999999999999865 788999999998886 78999998 5666 57999999
Q ss_pred HHHHhhhCCCCCEEEEccCcchHHHHHHHHHHhcCCCCeEC
Q 028618 166 PELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKVR 206 (206)
Q Consensus 166 ~Ei~~q~~~~~d~vv~~vG~Gg~~aGi~~~~k~~~p~~~vi 206 (206)
.||++|++ .+|+||+|+|+||+++|++.+||+.+|++|||
T Consensus 161 ~Ei~~q~~-~~D~vv~pvG~Gg~~~Gv~~~~k~~~~~~~vi 200 (322)
T PRK06110 161 LELFRAVP-DLDVVYVPIGMGSGICGAIAARDALGLKTRIV 200 (322)
T ss_pred HHHHhhCC-CCCEEEEecCHHHHHHHHHHHHHHhCCCCEEE
Confidence 99999995 79999999999999999999999999999986
No 24
>PRK08638 threonine dehydratase; Validated
Probab=100.00 E-value=2.2e-48 Score=330.78 Aligned_cols=192 Identities=24% Similarity=0.342 Sum_probs=177.1
Q ss_pred cchhhhhhccccCCcceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCCchHHHH
Q 028618 6 SNIAKDVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGL 85 (206)
Q Consensus 6 ~~~~~~i~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~aSsGN~g~al 85 (206)
...++++.+.+++|||+++++|++..|++||+|+|++|||||||||++.+++..+.++.. ..+|+++|+||||.|+
T Consensus 15 ~~a~~~i~~~i~~TPlv~~~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~i~~~~~~~~----~~~vv~~SsGN~g~al 90 (333)
T PRK08638 15 IEAKQRLAGRIRKTPLPRSNYLSERCKGEIFLKLENMQRTGSFKIRGAFNKLSSLTDAEK----RKGVVACSAGNHAQGV 90 (333)
T ss_pred HHHHHHhhCcCcCCCceechhhHHhhCCeEEEEeccCCccCCcHHHHHHHHHHhccHHhc----CCeEEEeCCcHHHHHH
Confidence 346788999999999999999988888999999999999999999999999988765332 1479999999999999
Q ss_pred HHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHHHHhHH
Q 028618 86 AFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTG 165 (206)
Q Consensus 86 A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~ 165 (206)
|++|+.+|++|+||||++.++.|+++++.+||+|+.++.+ ++++.+.+++++++. +++|++||+||.+ ..||.|++
T Consensus 91 A~~aa~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~--~~~~~~~a~~~a~~~-g~~~~~~~~~~~~-~~g~~t~a 166 (333)
T PRK08638 91 ALSCALLGIDGKVVMPKGAPKSKVAATCGYGAEVVLHGDN--FNDTIAKVEEIVEEE-GRTFIPPYDDPKV-IAGQGTIG 166 (333)
T ss_pred HHHHHHcCCCEEEEeCCCCcHHHHHHHHHcCCEEEEECcC--HHHHHHHHHHHHHhc-CCEEcCcCCCcch-hccccHHH
Confidence 9999999999999999999999999999999999999876 788999999999886 7899999999998 68999999
Q ss_pred HHHHhhhCCCCCEEEEccCcchHHHHHHHHHHhcCCCCeEC
Q 028618 166 PELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKVR 206 (206)
Q Consensus 166 ~Ei~~q~~~~~d~vv~~vG~Gg~~aGi~~~~k~~~p~~~vi 206 (206)
+||++|+ +++|+||+|+|+||+++|++.+||+.+|++|||
T Consensus 167 ~Ei~~q~-~~~d~vv~~vG~Gg~~~Gv~~~lk~~~~~~~vi 206 (333)
T PRK08638 167 LEILEDL-WDVDTVIVPIGGGGLIAGIAVALKSINPTIHII 206 (333)
T ss_pred HHHHhhc-CCCCEEEEEeChhHHHHHHHHHHHHhCCCCEEE
Confidence 9999999 569999999999999999999999999999986
No 25
>cd06447 D-Ser-dehyd D-Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- or D-serine to pyruvate and ammonia. D-serine dehydratase serves as a detoxifying enzyme in most E. coli strains where D-serine is a competitive antagonist of beta-alanine in the biosynthetic pathway to pentothenate and coenzyme A. D-serine dehydratase is different from other pyridoxal-5'-phosphate-dependent enzymes in that it catalyzes alpha, beta-elimination reactions on amino acids.
Probab=100.00 E-value=2.7e-48 Score=335.84 Aligned_cols=188 Identities=22% Similarity=0.266 Sum_probs=170.2
Q ss_pred ccCCcceecccccCCCC--------ceEEEEeCCCCC-CCChhhHHHHHHHHH-----HHHcCCCCCCC-----------
Q 028618 16 IGNTPLVYLNNIVNGCV--------ARIAAKLEMMEP-CSSVKDRIGYSMISD-----AEAKGLITPGE----------- 70 (206)
Q Consensus 16 ~~~TPl~~~~~l~~~~g--------~~i~~K~E~~~p-tGS~K~R~a~~~~~~-----a~~~g~~~~~~----------- 70 (206)
+++|||++++++++.+| .+||+|+|++|| |||||||++.+++.. +.+.|.+.|+.
T Consensus 50 ~~~TPLv~~~~ls~~~g~~~~~~~~~~v~~K~E~~nP~tGSfKdRgA~~~i~~l~~~~a~~~G~l~pg~~~~~~~~~~~~ 129 (404)
T cd06447 50 IIESPLLPIPRMKQALEKLYHQPIKGRLLLKADSHLPISGSIKARGGIYEVLKHAEKLALEHGLLTLEDDYSKLASEKFR 129 (404)
T ss_pred ccCCCceehHHHHHHhccccccCcCceEEEEecCCCCCCCChHHHHHHHHHHHHhHHHHHHhCCCCcccchhhhhhhhhh
Confidence 99999999999887654 799999999999 999999999999864 77888887764
Q ss_pred -----eEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCe
Q 028618 71 -----SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNA 145 (206)
Q Consensus 71 -----~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~ 145 (206)
++||++|+||||+|+|++|+.+|++|+||||+++++.|++.++.+||+|+.++.+ ++++.+.+++++++.+++
T Consensus 130 ~~~~~~~VV~aSsGN~G~alA~~a~~~G~~~~IvvP~~~~~~K~~~ira~GAeVv~v~~~--~~~a~~~a~~la~~~~~~ 207 (404)
T cd06447 130 KLFSQYSIAVGSTGNLGLSIGIMAAALGFKVTVHMSADAKQWKKDKLRSKGVTVVEYETD--YSKAVEEGRKQAAADPMC 207 (404)
T ss_pred hcccCCEEEEECccHHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHCCCEEEEECCC--HHHHHHHHHHHHHHCCCe
Confidence 4899999999999999999999999999999999999999999999999999976 789999999999987678
Q ss_pred EEcCCCCCCccHHHHHHhHHHHHHhhhCC---C-----CCEEEEccCcchHHHHHHHHHHhc-CCCCeEC
Q 028618 146 YMLQQFENPANPKIHYETTGPELWKGSGG---R-----IDALVSGIGTGGTITGAGKFLKEK-NPNIKVR 206 (206)
Q Consensus 146 ~~~~~~~~~~~~~~g~~t~~~Ei~~q~~~---~-----~d~vv~~vG~Gg~~aGi~~~~k~~-~p~~~vi 206 (206)
+|++|+++++. ++||+|+++||++|+++ . ||+||+|+|+||+++|++++||+. +|+++||
T Consensus 208 ~~v~~~n~~~~-iaG~~T~g~EI~eQl~~~~~~vD~~~Pd~VvvpvG~GGli~GIa~~lK~~~~p~~kVi 276 (404)
T cd06447 208 YFVDDENSRDL-FLGYAVAASRLKAQLAELGIKVDAEHPLFVYLPCGVGGAPGGVAFGLKLIFGDNVHCF 276 (404)
T ss_pred EeCCCCCchhH-HhhHHHHHHHHHHHhhhccCccccCCCCEEEEecCccHHHHHHHHHHHHhcCCCCEEE
Confidence 89999666655 88999999999999952 2 568999999999999999999997 7999885
No 26
>PLN02550 threonine dehydratase
Probab=100.00 E-value=3.2e-48 Score=346.80 Aligned_cols=188 Identities=22% Similarity=0.338 Sum_probs=174.6
Q ss_pred hhhccccCCcceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCCchHHHHHHHHH
Q 028618 11 DVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAA 90 (206)
Q Consensus 11 ~i~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~aSsGN~g~alA~~a~ 90 (206)
++++.+.+|||+++++|++.+|++||+|+|++||+||||+|++.+.+..+.++.. . ++||++|+||||+++|++|+
T Consensus 102 ~v~~~i~~TPL~~s~~LS~~~g~~IylK~E~lqptGSFK~RGA~n~I~~L~~e~~-~---~GVV~aSaGNhAqgvA~aA~ 177 (591)
T PLN02550 102 KVYDVAIESPLQLAKKLSERLGVKVLLKREDLQPVFSFKLRGAYNMMAKLPKEQL-D---KGVICSSAGNHAQGVALSAQ 177 (591)
T ss_pred hhhccccCChhhhhHHhhHhhCCEEEEEEcCCCCCCcHHHHHHHHHHHHHHHhcC-C---CCEEEECCCHHHHHHHHHHH
Confidence 4568899999999999999999999999999999999999999999998854432 2 46999999999999999999
Q ss_pred HCCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHHHHhHHHHHHh
Q 028618 91 AKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWK 170 (206)
Q Consensus 91 ~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~ 170 (206)
++|++|+||||++++..|++.++.+||+|++++.+ ++++.+.+.+++++. +++|++||+|+.+ ++||+|+|.||++
T Consensus 178 ~lGika~IvmP~~tp~~Kv~~~r~~GAeVvl~g~~--~dea~~~A~~la~e~-g~~fi~pfddp~v-iaGqgTig~EI~e 253 (591)
T PLN02550 178 RLGCDAVIAMPVTTPEIKWQSVERLGATVVLVGDS--YDEAQAYAKQRALEE-GRTFIPPFDHPDV-IAGQGTVGMEIVR 253 (591)
T ss_pred HcCCCEEEEECCCCCHHHHHHHHHcCCEEEEeCCC--HHHHHHHHHHHHHhc-CCEEECCCCChHH-HHHHHHHHHHHHH
Confidence 99999999999999999999999999999999976 889999999999885 7899999999998 6899999999999
Q ss_pred hhCCCCCEEEEccCcchHHHHHHHHHHhcCCCCeEC
Q 028618 171 GSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKVR 206 (206)
Q Consensus 171 q~~~~~d~vv~~vG~Gg~~aGi~~~~k~~~p~~~vi 206 (206)
|+++.+|+||+|+|+||+++|++.++|+.+|++|||
T Consensus 254 Ql~~~~D~VvvpVGgGGLiaGia~~lK~l~p~vkVI 289 (591)
T PLN02550 254 QHQGPLHAIFVPVGGGGLIAGIAAYVKRVRPEVKII 289 (591)
T ss_pred HcCCCCCEEEEEeChhHHHHHHHHHHHHhCCCCEEE
Confidence 996569999999999999999999999999999996
No 27
>KOG1252 consensus Cystathionine beta-synthase and related enzymes [Amino acid transport and metabolism]
Probab=100.00 E-value=7.4e-49 Score=323.25 Aligned_cols=203 Identities=69% Similarity=1.082 Sum_probs=193.2
Q ss_pred cccchhhhhhccccCCcceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCCchHH
Q 028618 4 ESSNIAKDVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGI 83 (206)
Q Consensus 4 ~~~~~~~~i~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~aSsGN~g~ 83 (206)
++..+.+.+.+.+|+|||+.+......+.++|++|+|.+||+||.|||.++.|+.+|+.+|.+.||+.+++++||||+|.
T Consensus 38 ~~~~~~~~~~~liG~TPlv~ln~i~~g~~~~i~~K~E~~~p~~SvKdRia~sMi~~Ae~~G~i~pg~stliEpTSGNtGi 117 (362)
T KOG1252|consen 38 ERILILWDVRDLIGNTPLVKLNKIAGGCVARIAAKLEYMNPGGSVKDRIAWSMIEDAEKKGLITPGKSTLIEPTSGNTGI 117 (362)
T ss_pred hhhhhhhhHHHHhCCCceEEeccccCCccceEEEEeeecCCcccHHHHHHHHHHHHHHHcCCccCCceEEEecCCCchHH
Confidence 44556778899999999999999988888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHH---HHHHHHHHHHhCCCeEEcCCCCCCccHHHH
Q 028618 84 GLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKG---AVQKAEEILAKTPNAYMLQQFENPANPKIH 160 (206)
Q Consensus 84 alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g 160 (206)
+||++|+..|++|+++||++.+.+|+..++++|++|+.+|....+.. +...+.++..+.|+.+.++||.||.||..|
T Consensus 118 gLA~~~a~~Gyk~i~tmP~~ms~Ek~~~l~a~Gaeii~tp~a~~~~~~e~ai~~a~~l~~~~pna~~l~Qf~np~Np~~h 197 (362)
T KOG1252|consen 118 GLAYMAALRGYKCIITMPEKMSKEKRILLRALGAEIILTPPAAGMKGPESAIGKAEELLNKTPNAYILDQFHNPGNPLAH 197 (362)
T ss_pred HHHHHHHHcCceEEEEechhhhHHHHHHHHHcCCEEEecChHHccCChHHHHHHHHHHHHhCCChHHHHHhcCCCCcccc
Confidence 99999999999999999999999999999999999999997755555 889999999999999999999999999999
Q ss_pred HHhHHHHHHhhhCCCCCEEEEccCcchHHHHHHHHHHhcCCCCeEC
Q 028618 161 YETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKVR 206 (206)
Q Consensus 161 ~~t~~~Ei~~q~~~~~d~vv~~vG~Gg~~aGi~~~~k~~~p~~~vi 206 (206)
|.++++||++|+.+.+|.+|.++|||||++|+.+++|+.+|+++|+
T Consensus 198 y~ttg~EI~~q~~g~vDi~V~gaGTGGTitgvGRylke~~~~~kVv 243 (362)
T KOG1252|consen 198 YETTGPEIWRQLDGKVDIFVAGAGTGGTITGVGRYLKEQNPNIKVV 243 (362)
T ss_pred cccccHHHHHHhcCCCCEEEeccCCCceeechhHHHHHhCCCCEEE
Confidence 9999999999998899999999999999999999999999999985
No 28
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form. Forms scoring between the trusted and noise cutoff tend to branch with this subgroup of threonine ammonia-lyase phylogenetically but have only a single copy of the C-terminal domain.
Probab=100.00 E-value=8.9e-48 Score=341.41 Aligned_cols=189 Identities=26% Similarity=0.356 Sum_probs=175.6
Q ss_pred hhhhccccCCcceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCCchHHHHHHHH
Q 028618 10 KDVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMA 89 (206)
Q Consensus 10 ~~i~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~aSsGN~g~alA~~a 89 (206)
.++++.+.+|||+++++|++.+|++||+|+|++||+||||+|+|.+++..+.++.. .++||++|+||||+++|++|
T Consensus 9 ~~v~~~i~~TPL~~~~~Ls~~~g~~i~lK~E~lqptgSfK~RgA~n~i~~l~~~~~----~~gVV~aSaGNha~~vA~aa 84 (499)
T TIGR01124 9 ARVYEAAQETPLQKAAKLSERLGNRILIKREDLQPVFSFKLRGAYNKMAQLSPEQK----ARGVIAASAGNHAQGVAFSA 84 (499)
T ss_pred hHhhCccCCCCeeehHHHHHHhCCEEEEEecCCCCCCCCHHHHHHHHHHHhhHHhc----CCEEEEECCCHHHHHHHHHH
Confidence 47888999999999999999899999999999999999999999999988743322 15799999999999999999
Q ss_pred HHCCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHHHHhHHHHHH
Q 028618 90 AAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELW 169 (206)
Q Consensus 90 ~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~ 169 (206)
+++|++|+||||++++..|++.++.+||+|+.++.+ ++++.+.+.+++++. +++|++||+||.+ ++|++|+|.||+
T Consensus 85 ~~~Gi~~~IvmP~~tp~~Kv~~~r~~GA~Vvl~g~~--~d~a~~~a~~la~~~-g~~~i~p~~~~~~-i~G~gtig~EI~ 160 (499)
T TIGR01124 85 ARLGLKALIVMPETTPDIKVDAVRGFGGEVVLHGAN--FDDAKAKAIELSQEK-GLTFIHPFDDPLV-IAGQGTLALEIL 160 (499)
T ss_pred HHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEeCcC--HHHHHHHHHHHHHhc-CCEeeCCCCChHH-HHhhHHHHHHHH
Confidence 999999999999999999999999999999999876 889999999999886 7899999999998 789999999999
Q ss_pred hhhCCCCCEEEEccCcchHHHHHHHHHHhcCCCCeEC
Q 028618 170 KGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKVR 206 (206)
Q Consensus 170 ~q~~~~~d~vv~~vG~Gg~~aGi~~~~k~~~p~~~vi 206 (206)
+|++..+|+||+|+|+||+++|++.++|+.+|++|||
T Consensus 161 ~q~~~~~D~vvvpvGgGGliaGia~~lk~~~p~~kVI 197 (499)
T TIGR01124 161 RQVANPLDAVFVPVGGGGLAAGVAALIKQLMPEIKVI 197 (499)
T ss_pred HhCCCCCCEEEEccCccHHHHHHHHHHHHhCCCCEEE
Confidence 9996679999999999999999999999999999986
No 29
>KOG1250 consensus Threonine/serine dehydratases [Amino acid transport and metabolism]
Probab=100.00 E-value=3e-48 Score=324.59 Aligned_cols=192 Identities=21% Similarity=0.246 Sum_probs=180.3
Q ss_pred chhhhhhccccCCcceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCCchHHHHH
Q 028618 7 NIAKDVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLA 86 (206)
Q Consensus 7 ~~~~~i~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~aSsGN~g~alA 86 (206)
..+..++..+..|||.+.-.|++.+|.++|+|+|++||+||||.||+.|++..+-++++ ..+++++|.||||+|+|
T Consensus 55 ~~~~~i~~~~~~TPl~~s~~lS~~~g~~vyLK~E~lQpsgSFK~RGa~~~~~kla~~~~----~~gViasSaGNha~a~A 130 (457)
T KOG1250|consen 55 SAHFKIYPVIVETPLLKSVALSKKAGMPVYLKREDLQPSGSFKIRGAGNALQKLAKQQK----KAGVIASSAGNHAQAAA 130 (457)
T ss_pred hhhhccccceecccchhhhhhhhhcCCceEEEehhcccccceehhhHHHHHHHHHHhhh----cCceEEecCccHHHHHH
Confidence 34566888999999999989999999999999999999999999999999998877764 26799999999999999
Q ss_pred HHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHHHHhHHH
Q 028618 87 FMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGP 166 (206)
Q Consensus 87 ~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~ 166 (206)
++|+++|+|++||||..+|.-|++.++.+||+|++.+.+ ++++...|.++++++ ++.|++|||+|+. .+|++|++.
T Consensus 131 yaa~~LgipaTIVmP~~tp~~kiq~~~nlGA~Vil~G~~--~deAk~~a~~lAke~-gl~yI~pfDhP~I-~aGqgTig~ 206 (457)
T KOG1250|consen 131 YAARKLGIPATIVMPVATPLMKIQRCRNLGATVILSGED--WDEAKAFAKRLAKEN-GLTYIPPFDHPDI-WAGQGTIGL 206 (457)
T ss_pred HHHHhcCCceEEEecCCChHHHHHHHhccCCEEEEeccc--HHHHHHHHHHHHHhc-CceecCCCCCchh-hcCcchHHH
Confidence 999999999999999999999999999999999999998 889999999999998 8999999999999 589999999
Q ss_pred HHHhhhCCCCCEEEEccCcchHHHHHHHHHHhcCCCCeEC
Q 028618 167 ELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKVR 206 (206)
Q Consensus 167 Ei~~q~~~~~d~vv~~vG~Gg~~aGi~~~~k~~~p~~~vi 206 (206)
||++|++.++++|+||||+||+++||+.|+|+..|+++||
T Consensus 207 EIl~ql~~~~~AI~vpVGGGGLiaGIat~vk~~~p~vkII 246 (457)
T KOG1250|consen 207 EILEQLKEPDGAIVVPVGGGGLIAGIATGVKRVGPHVKII 246 (457)
T ss_pred HHHHhhcCCCCeEEEecCCchhHHHHHHHHHHhCCCCceE
Confidence 9999997666799999999999999999999999999997
No 30
>PRK08639 threonine dehydratase; Validated
Probab=100.00 E-value=3.1e-48 Score=339.28 Aligned_cols=192 Identities=25% Similarity=0.365 Sum_probs=173.7
Q ss_pred chhhhhhccccCCcceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCCchHHHHH
Q 028618 7 NIAKDVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLA 86 (206)
Q Consensus 7 ~~~~~i~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~aSsGN~g~alA 86 (206)
..++++.+.+++|||++++++++..|++||+|+|++|||||||+|+|.+++..+.+... .++||++|+||||+++|
T Consensus 14 ~a~~~i~~~i~~TPl~~~~~ls~~~g~~l~~K~E~~~ptGSfK~RgA~~~i~~l~~~~~----~~~Vv~aSsGN~g~alA 89 (420)
T PRK08639 14 KAAKRLKDVVPETPLQRNDYLSEKYGANVYLKREDLQPVRSYKLRGAYNAISQLSDEEL----AAGVVCASAGNHAQGVA 89 (420)
T ss_pred HHHHHHhCcCcCCCccchHHHHHHhCCEEEEEecCCCCCCCcHHHHHHHHHHhCCHHhh----CCEEEEECccHHHHHHH
Confidence 46678999999999999999998889999999999999999999999999988533221 25799999999999999
Q ss_pred HHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEE---EEeCCCCChHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHHHHh
Q 028618 87 FMAAAKQYRLIITMPASMSLERRIILRAFGAEL---VLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYET 163 (206)
Q Consensus 87 ~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v---~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t 163 (206)
++|+++|++|+||||+++++.|++.++.+||+| +.++.+ ++++.+.+.+++++. +++|++||+|+.+ ++||+|
T Consensus 90 ~~a~~~G~~~~IvmP~~~~~~k~~~~r~~GA~vv~v~~~g~~--~~~a~~~a~~~a~~~-g~~~~~~~~~~~~-~~G~~t 165 (420)
T PRK08639 90 YACRHLGIPGVIFMPVTTPQQKIDQVRFFGGEFVEIVLVGDT--FDDSAAAAQEYAEET-GATFIPPFDDPDV-IAGQGT 165 (420)
T ss_pred HHHHHcCCCEEEEECCCChHHHHHHHHHcCCCeeEEEEeCcC--HHHHHHHHHHHHHhc-CCcccCCCCChhH-hcchhH
Confidence 999999999999999999999999999999974 444444 889999999999886 7999999999998 689999
Q ss_pred HHHHHHhhhCCC--CCEEEEccCcchHHHHHHHHHHhcCCCCeEC
Q 028618 164 TGPELWKGSGGR--IDALVSGIGTGGTITGAGKFLKEKNPNIKVR 206 (206)
Q Consensus 164 ~~~Ei~~q~~~~--~d~vv~~vG~Gg~~aGi~~~~k~~~p~~~vi 206 (206)
+|.||++|+++. ||+||+|+|+||+++|++.++|+.+|++|||
T Consensus 166 ig~EI~eq~~~~~~~D~vv~~vG~GG~~aGva~~~k~~~p~~~vi 210 (420)
T PRK08639 166 VAVEILEQLEKEGSPDYVFVPVGGGGLISGVTTYLKERSPKTKII 210 (420)
T ss_pred HHHHHHHhccccCCCCEEEEecChhHHHHHHHHHHHHhCCCCEEE
Confidence 999999999655 9999999999999999999999999999986
No 31
>PRK06608 threonine dehydratase; Provisional
Probab=100.00 E-value=8.3e-48 Score=327.86 Aligned_cols=193 Identities=19% Similarity=0.216 Sum_probs=176.5
Q ss_pred ccchhhhhhccccCCcceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCCchHHH
Q 028618 5 SSNIAKDVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIG 84 (206)
Q Consensus 5 ~~~~~~~i~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~aSsGN~g~a 84 (206)
....++++.+.+++|||+++++|++..|++||+|+|++||+||||+|++.+++.++.++|.+. ++||++|+||||+|
T Consensus 10 i~~A~~~i~~~i~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~K~R~a~~~v~~a~~~g~~~---~~vv~~SsGN~g~a 86 (338)
T PRK06608 10 IAAAHNRIKQYLHLTPIVHSESLNEMLGHEIFFKVESLQKTGAFKVRGVLNHLLELKEQGKLP---DKIVAYSTGNHGQA 86 (338)
T ss_pred HHHHHHHHhCcCcCCCccchHhHHHHhCCEEEEEeCCCCCCCCcHHHHHHHHHHHhhhhcCcC---CeEEEECCCHHHHH
Confidence 345677899999999999999999988999999999999999999999999999999988753 47999999999999
Q ss_pred HHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHHHHhH
Q 028618 85 LAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETT 164 (206)
Q Consensus 85 lA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~ 164 (206)
+|++|+.+|++|++|||+++++.|+++++.+||+|+.++. .+++.+.+++ +++ +++||++||+|+.+ ..||+|+
T Consensus 87 lA~~a~~~G~~~~vv~p~~~~~~k~~~l~~~GA~V~~~~~---~~~~~~~a~~-~~~-~~~~~~~~~~~~~~-~~g~~t~ 160 (338)
T PRK06608 87 VAYASKLFGIKTRIYLPLNTSKVKQQAALYYGGEVILTNT---RQEAEEKAKE-DEE-QGFYYIHPSDSDST-IAGAGTL 160 (338)
T ss_pred HHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEECC---HHHHHHHHHH-HHh-CCCEEcCCCCCHHH-hccHHHH
Confidence 9999999999999999999999999999999999999974 3567777777 444 58999999999998 5799999
Q ss_pred HHHHHhhhCCCCCEEEEccCcchHHHHHHHHHHhcCCCCeEC
Q 028618 165 GPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKVR 206 (206)
Q Consensus 165 ~~Ei~~q~~~~~d~vv~~vG~Gg~~aGi~~~~k~~~p~~~vi 206 (206)
+.||++|++..||+||+|+|+||+++|++.++|+.+|+++||
T Consensus 161 a~Ei~~q~~~~~D~vv~~vG~GGt~~Gi~~~~k~~~~~~~vi 202 (338)
T PRK06608 161 CYEALQQLGFSPDAIFASCGGGGLISGTYLAKELISPTSLLI 202 (338)
T ss_pred HHHHHHhcCCCcCEEEEeechhHHHHHHHHHHHhcCCCCEEE
Confidence 999999997689999999999999999999999999999986
No 32
>TIGR02079 THD1 threonine dehydratase. This model represents threonine dehydratase, the first step in the pathway converting threonine into isoleucine. At least two other clades of biosynthetic threonine dehydratases have been characterized by models TIGR01124 and TIGR01127. Those sequences described by this model are exclusively found in species containg the rest of the isoleucine pathway and which are generally lacking in members of the those other two clades of threonine dehydratases. Members of this clade are also often gene clustered with other elements of the isoleucine pathway.
Probab=100.00 E-value=6.9e-48 Score=335.82 Aligned_cols=193 Identities=22% Similarity=0.329 Sum_probs=174.4
Q ss_pred cchhhhhhccccCCcceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCCchHHHH
Q 028618 6 SNIAKDVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGL 85 (206)
Q Consensus 6 ~~~~~~i~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~aSsGN~g~al 85 (206)
...++++...+++|||+++++|++..|.+||+|+|++|||||||+|+|.+++..+.+... . +++|++|+||||+++
T Consensus 4 ~~a~~~i~~~i~~TPl~~~~~ls~~~g~~iy~K~E~~~ptGSfK~RgA~~~i~~l~~~~~-~---~gvv~aSsGN~g~a~ 79 (409)
T TIGR02079 4 EAARKRLKEVVPHTPLQLNERLSEKYGANIYLKREDLQPVRSYKIRGAYNFLKQLSDAQL-A---KGVVCASAGNHAQGF 79 (409)
T ss_pred HHHHHHHhCcCCCCCccccHHHHHHhCCEEEEEecCCCCCCCcHHHHHHHHHHhCCHHhh-C---CEEEEECccHHHHHH
Confidence 346778999999999999999998889999999999999999999999999987543222 1 479999999999999
Q ss_pred HHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCE---EEEeCCCCChHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHHHH
Q 028618 86 AFMAAAKQYRLIITMPASMSLERRIILRAFGAE---LVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYE 162 (206)
Q Consensus 86 A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~---v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~ 162 (206)
|++|+++|++|++|||+++++.|++.++.+||+ |+.++.+ ++++.+.+.+++++. +++|++||+||.+ ..||+
T Consensus 80 A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~vv~v~~~g~~--~~~a~~~a~~~~~~~-g~~~~~~~~~~~~-~~g~~ 155 (409)
T TIGR02079 80 AYACRHLGVHGTVFMPATTPKQKIDRVKIFGGEFIEIILVGDT--FDQCAAAAREHVEDH-GGTFIPPFDDPRI-IEGQG 155 (409)
T ss_pred HHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCCeeEEEEeCCC--HHHHHHHHHHHHHhc-CCEEeCCCCCHhH-hhhhH
Confidence 999999999999999999999999999999997 4445544 889999999999886 7899999999998 68999
Q ss_pred hHHHHHHhhhCCCCCEEEEccCcchHHHHHHHHHHhcCCCCeEC
Q 028618 163 TTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKVR 206 (206)
Q Consensus 163 t~~~Ei~~q~~~~~d~vv~~vG~Gg~~aGi~~~~k~~~p~~~vi 206 (206)
|++.||++|++..||+||+|+|+||+++|++.+||+.+|++|||
T Consensus 156 ti~~Ei~~q~~~~~D~vv~pvG~GG~~~Gia~~~k~~~p~~~vi 199 (409)
T TIGR02079 156 TVAAEILDQLPEKPDYVVVPVGGGGLISGLTTYLAGTSPKTKII 199 (409)
T ss_pred HHHHHHHHhcCCCCCEEEEEecHhHHHHHHHHHHHHhCCCCEEE
Confidence 99999999997679999999999999999999999999999986
No 33
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=100.00 E-value=9.7e-48 Score=332.71 Aligned_cols=179 Identities=23% Similarity=0.353 Sum_probs=169.4
Q ss_pred CcceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCCchHHHHHHHHHHCCCcEEE
Q 028618 19 TPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLII 98 (206)
Q Consensus 19 TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~aSsGN~g~alA~~a~~~g~~~~i 98 (206)
|||++++++++..|++||+|+|++|||||||+|+|.+++.++.+++.. +++|++|+||||+++|++|+++|++|++
T Consensus 1 TPl~~~~~ls~~~g~~i~~K~E~~~ptgS~K~R~a~~~i~~~~~~~~~----~~vv~aSsGN~g~alA~~a~~~G~~~~i 76 (380)
T TIGR01127 1 TPLIYSTTLSDITGSEVYLKLENLQKTGSFKIRGALNKIANLSEDQRQ----RGVVAASAGNHAQGVAYAAKKFGIKAVI 76 (380)
T ss_pred CCceehHHHHHHhCCeEEEEecCCCCCCCcHHHHHHHHHHhcchhccC----CEEEEECCCHHHHHHHHHHHHcCCCEEE
Confidence 899999999998899999999999999999999999999999888763 4799999999999999999999999999
Q ss_pred EeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHHHHhHHHHHHhhhCCCCCE
Q 028618 99 TMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDA 178 (206)
Q Consensus 99 vvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~q~~~~~d~ 178 (206)
|||++++..|++.++.+||+|++++.+ ++++.+.+++++++. +++|++||+|+.+ +.||+|++.||++|++ .||+
T Consensus 77 v~p~~~~~~k~~~~~~~GA~V~~~~~~--~~~a~~~a~~~~~~~-~~~~~~~~~~~~~-~~g~~t~~~Ei~~q~~-~~D~ 151 (380)
T TIGR01127 77 VMPESAPPSKVKATKSYGAEVILHGDD--YDEAYAFATSLAEEE-GRVFVHPFDDEFV-MAGQGTIGLEIMEDIP-DVDT 151 (380)
T ss_pred EEcCCCcHHHHHHHHHCCCEEEEECCC--HHHHHHHHHHHHHhc-CCEecCCCCChhh-hhhhHHHHHHHHHhCC-CCCE
Confidence 999999999999999999999999876 889999999998885 7899999999998 6899999999999994 7999
Q ss_pred EEEccCcchHHHHHHHHHHhcCCCCeEC
Q 028618 179 LVSGIGTGGTITGAGKFLKEKNPNIKVR 206 (206)
Q Consensus 179 vv~~vG~Gg~~aGi~~~~k~~~p~~~vi 206 (206)
||+|+|+||+++|++.++|+.+|++|||
T Consensus 152 vv~~vG~Gg~~aGi~~~~k~~~p~~kvi 179 (380)
T TIGR01127 152 VIVPVGGGGLISGVASAAKQINPNVKVI 179 (380)
T ss_pred EEEEeChHHHHHHHHHHHHHhCCCCEEE
Confidence 9999999999999999999999999986
No 34
>cd01562 Thr-dehyd Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen. Although the nitrogen atoms of most amino acids are transferred to alpha-ketoglutarate before removal, the alpha-amino group of threonine can be directly converted into NH4+. The direct deamination is catalyzed by threonine dehydratase, in which pyridoxal phosphate (PLP) is the prosthetic group. Threonine dehydratase is widely distributed in all three major phylogenetic divisions.
Probab=100.00 E-value=1e-47 Score=323.27 Aligned_cols=194 Identities=24% Similarity=0.323 Sum_probs=180.7
Q ss_pred cccchhhhhhccccCCcceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCCchHH
Q 028618 4 ESSNIAKDVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGI 83 (206)
Q Consensus 4 ~~~~~~~~i~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~aSsGN~g~ 83 (206)
+.+..++.|.+.+++|||+++++|++.+|++||+|+|++||+||||||++.+++.++.+++. .+++|++|+||||+
T Consensus 3 ~~~~~~~~i~~~ig~TPl~~~~~l~~~~g~~i~~K~E~~nptgS~Kdr~a~~~l~~~~~~~~----~~~iv~~ssGN~g~ 78 (304)
T cd01562 3 DILAAAARIKPVVRRTPLLTSPTLSELLGAEVYLKCENLQKTGSFKIRGAYNKLLSLSEEER----AKGVVAASAGNHAQ 78 (304)
T ss_pred HHHHHHHHHhCcCCCCCcccchhhHHHhCCeEEEEeccCCCcCCcHHHhHHHHHHhcCHhhc----CCcEEEECCCHHHH
Confidence 45678899999999999999999998888999999999999999999999999999887762 15699999999999
Q ss_pred HHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHHHHh
Q 028618 84 GLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYET 163 (206)
Q Consensus 84 alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t 163 (206)
|+|++|+.+|++|++|+|.+.++.|+++++.+||+|+.++.+ ++++.+.+++++++. +++|++|++|+.+ ..||.+
T Consensus 79 alA~~a~~~G~~~~ivvp~~~~~~k~~~l~~~Ga~vi~~~~~--~~~~~~~a~~la~~~-~~~~~~~~~n~~~-~~g~~~ 154 (304)
T cd01562 79 GVAYAAKLLGIPATIVMPETAPAAKVDATRAYGAEVVLYGED--FDEAEAKARELAEEE-GLTFIHPFDDPDV-IAGQGT 154 (304)
T ss_pred HHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEeCCC--HHHHHHHHHHHHHhc-CCEEeCCCCCcch-hccHHH
Confidence 999999999999999999999999999999999999999987 788999999999886 7899999999987 579999
Q ss_pred HHHHHHhhhCCCCCEEEEccCcchHHHHHHHHHHhcCCCCeEC
Q 028618 164 TGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKVR 206 (206)
Q Consensus 164 ~~~Ei~~q~~~~~d~vv~~vG~Gg~~aGi~~~~k~~~p~~~vi 206 (206)
+++||++|++. ||+||+|+|||||++|++.+||+.+|++|||
T Consensus 155 ~~~Ei~~q~~~-~d~vv~~vGtGgt~~Gi~~~lk~~~~~~kvi 196 (304)
T cd01562 155 IGLEILEQVPD-LDAVFVPVGGGGLIAGIATAVKALSPNTKVI 196 (304)
T ss_pred HHHHHHHhcCC-CCEEEEecCHHHHHHHHHHHHHHhCCCCEEE
Confidence 99999999964 9999999999999999999999999999986
No 35
>PRK09224 threonine dehydratase; Reviewed
Probab=100.00 E-value=2.5e-47 Score=339.53 Aligned_cols=189 Identities=25% Similarity=0.362 Sum_probs=175.4
Q ss_pred hhhhccccCCcceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCCchHHHHHHHH
Q 028618 10 KDVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMA 89 (206)
Q Consensus 10 ~~i~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~aSsGN~g~alA~~a 89 (206)
.++++.+++|||++++++++..|.+||+|+|++||+||||+|+|.+++..+.++.. .++||++|+||||+++|++|
T Consensus 12 ~~v~~~~~~TPL~~~~~Ls~~~g~~i~lK~E~lqptgSfK~RgA~n~i~~l~~~~~----~~gvV~aSaGNha~avA~aa 87 (504)
T PRK09224 12 ARVYDVAQETPLEKAPKLSARLGNQVLLKREDLQPVFSFKLRGAYNKMAQLTEEQL----ARGVITASAGNHAQGVALSA 87 (504)
T ss_pred HHhcCcCCCCCceehhHhHHHhCCEEEEEecCCCCCCCChHHHHHHHHHhhhHHhc----CCEEEEECcCHHHHHHHHHH
Confidence 46788999999999999999899999999999999999999999999988753322 25799999999999999999
Q ss_pred HHCCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHHHHhHHHHHH
Q 028618 90 AAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELW 169 (206)
Q Consensus 90 ~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~ 169 (206)
+.+|++|+||||++++..|++.++.+||+|+.++.+ ++++.+.+.+++++. +++|++||+|+.+ ++|++|++.||+
T Consensus 88 ~~lGi~~~IvmP~~tp~~K~~~~r~~GA~Vi~~g~~--~~~a~~~a~~l~~~~-g~~~v~~f~~~~~-i~G~gTi~~EI~ 163 (504)
T PRK09224 88 ARLGIKAVIVMPVTTPDIKVDAVRAFGGEVVLHGDS--FDEAYAHAIELAEEE-GLTFIHPFDDPDV-IAGQGTIAMEIL 163 (504)
T ss_pred HHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEECCC--HHHHHHHHHHHHHhc-CCEEeCCCCCcHH-HHhHHHHHHHHH
Confidence 999999999999999999999999999999999876 889999999999885 8899999999998 689999999999
Q ss_pred hhhCCCCCEEEEccCcchHHHHHHHHHHhcCCCCeEC
Q 028618 170 KGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKVR 206 (206)
Q Consensus 170 ~q~~~~~d~vv~~vG~Gg~~aGi~~~~k~~~p~~~vi 206 (206)
+|++..||+||+|+||||+++|++.++|+.+|++|||
T Consensus 164 ~q~~~~~D~vvvpvGgGGliaGia~~lk~~~p~~kVi 200 (504)
T PRK09224 164 QQHPHPLDAVFVPVGGGGLIAGVAAYIKQLRPEIKVI 200 (504)
T ss_pred HhccCCCCEEEEecChhHHHHHHHHHHHHhCCCCEEE
Confidence 9996569999999999999999999999999999986
No 36
>PRK06815 hypothetical protein; Provisional
Probab=100.00 E-value=1.8e-47 Score=323.73 Aligned_cols=194 Identities=21% Similarity=0.243 Sum_probs=176.6
Q ss_pred cccchhhhhhccccCCcceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCCchHH
Q 028618 4 ESSNIAKDVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGI 83 (206)
Q Consensus 4 ~~~~~~~~i~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~aSsGN~g~ 83 (206)
+....++++.+.+++|||++++++++..|++||+|+|++|||||||+|++.+++..+.++.. .+++|++|+||||+
T Consensus 6 ~i~~a~~~~~~~i~~TPLv~~~~l~~~~g~~i~~K~E~~nptgS~KdR~a~~~~~~l~~~~~----~~~vv~aSsGN~g~ 81 (317)
T PRK06815 6 AILEAHQRLRPQVRVTPLEHSPLLSQHTGCEVYLKCEHLQHTGSFKFRGASNKLRLLNEAQR----QQGVITASSGNHGQ 81 (317)
T ss_pred HHHHHHHHhhCCCCCCCccccHhHHHhhCCeEEEEecCCCCCCCcHHHHHHHHHHhcchhhc----CceEEEECCChHHH
Confidence 34457788999999999999999998888999999999999999999999999987643322 25699999999999
Q ss_pred HHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHHHHh
Q 028618 84 GLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYET 163 (206)
Q Consensus 84 alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t 163 (206)
|+|++|+.+|++|++|||.++++.|++.++.+||+|+.++.+ ++++...+++++++. +++|++||+|+++ ..||++
T Consensus 82 alA~~a~~~G~~~~i~~p~~~~~~k~~~~~~~GA~V~~~~~~--~~~~~~~a~~~~~~~-~~~~~~~~~~~~~-~~g~~t 157 (317)
T PRK06815 82 GVALAAKLAGIPVTVYAPEQASAIKLDAIRALGAEVRLYGGD--ALNAELAARRAAEQQ-GKVYISPYNDPQV-IAGQGT 157 (317)
T ss_pred HHHHHHHHhCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCC--HHHHHHHHHHHHHhc-CCEEecCCCChhh-hcchhH
Confidence 999999999999999999999999999999999999999987 778888899998875 7899999999987 579999
Q ss_pred HHHHHHhhhCCCCCEEEEccCcchHHHHHHHHHHhcCCCCeEC
Q 028618 164 TGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKVR 206 (206)
Q Consensus 164 ~~~Ei~~q~~~~~d~vv~~vG~Gg~~aGi~~~~k~~~p~~~vi 206 (206)
+++||++|++ .||+||+|+|+||+++|++.+|++.+|++|||
T Consensus 158 ~a~Ei~~q~~-~~d~vv~~vG~Gg~~~Gi~~~~k~~~~~~~vi 199 (317)
T PRK06815 158 IGMELVEQQP-DLDAVFVAVGGGGLISGIATYLKTLSPKTEII 199 (317)
T ss_pred HHHHHHHhcC-CCCEEEEECcHHHHHHHHHHHHHHhCCCCEEE
Confidence 9999999995 69999999999999999999999999999986
No 37
>PRK06381 threonine synthase; Validated
Probab=100.00 E-value=5.1e-47 Score=321.28 Aligned_cols=186 Identities=23% Similarity=0.307 Sum_probs=171.0
Q ss_pred hccccCCcceecccccCCCC-ceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCCchHHHHHHHHHH
Q 028618 13 TELIGNTPLVYLNNIVNGCV-ARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAA 91 (206)
Q Consensus 13 ~~~~~~TPl~~~~~l~~~~g-~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~aSsGN~g~alA~~a~~ 91 (206)
...+++|||+++++|++.+| .+||+|+|++||+||||+|++.+++.+++++|. ++||++|+||||+|+|++|+.
T Consensus 10 ~~~~g~TPL~~~~~l~~~~G~~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~-----~~lv~aSsGN~g~alA~~aa~ 84 (319)
T PRK06381 10 EKPPGGTPLLRARKLEEELGLRKIYLKFEGANPTGTQKDRIAEAHVRRAMRLGY-----SGITVGTCGNYGASIAYFARL 84 (319)
T ss_pred cccCCCCceeEhHhhHHhcCCceEEEEecCCCCccCcHHHHHHHHHHHHHHcCC-----CEEEEeCCcHHHHHHHHHHHH
Confidence 34689999999999998888 599999999999999999999999999999986 689999999999999999999
Q ss_pred CCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEcCCCC-CCccHHHHHHhHHHHHHh
Q 028618 92 KQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFE-NPANPKIHYETTGPELWK 170 (206)
Q Consensus 92 ~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~g~~t~~~Ei~~ 170 (206)
+|++|++|||...+..|+++++.+||+|+.++.+ ++++.+.+++++++. ++|++++++ |+.....||.|+++||++
T Consensus 85 ~G~~~~ivvp~~~~~~~~~~l~~~GA~V~~~~~~--~~~~~~~a~~~~~~~-~~~~~~~~~~n~~~~~~G~~t~a~Ei~~ 161 (319)
T PRK06381 85 YGLKAVIFIPRSYSNSRVKEMEKYGAEIIYVDGK--YEEAVERSRKFAKEN-GIYDANPGSVNSVVDIEAYSAIAYEIYE 161 (319)
T ss_pred cCCcEEEEECCCCCHHHHHHHHHcCCEEEEcCCC--HHHHHHHHHHHHHHc-CcEecCCCCCCcchHhhhHHHHHHHHHH
Confidence 9999999999999999999999999999999986 778889999998875 788898886 763226799999999999
Q ss_pred hhCCCCCEEEEccCcchHHHHHHHHHHhc------CCCCeEC
Q 028618 171 GSGGRIDALVSGIGTGGTITGAGKFLKEK------NPNIKVR 206 (206)
Q Consensus 171 q~~~~~d~vv~~vG~Gg~~aGi~~~~k~~------~p~~~vi 206 (206)
|++..||+||+|+|+||+++|++.+|++. +|+++||
T Consensus 162 ql~~~~D~vv~~vGtGgt~~Gl~~~~~~~~~~g~~~~~~~vi 203 (319)
T PRK06381 162 ALGDVPDAVAVPVGNGTTLAGIYHGFRRLYDRGKTSRMPRMI 203 (319)
T ss_pred HhCCCCCEEEEcCCccHHHHHHHHHHHHHHhCCCcCCCCEEE
Confidence 99767999999999999999999999998 7888875
No 38
>PRK07334 threonine dehydratase; Provisional
Probab=100.00 E-value=1.5e-47 Score=333.49 Aligned_cols=192 Identities=23% Similarity=0.286 Sum_probs=176.8
Q ss_pred cchhhhhhccccCCcceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCCchHHHH
Q 028618 6 SNIAKDVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGL 85 (206)
Q Consensus 6 ~~~~~~i~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~aSsGN~g~al 85 (206)
...++++.+.+++|||++++++++.+|.+||+|+|+.|||||||||++.+++..+.++.. .+++|++|+||||+|+
T Consensus 11 ~~a~~~i~~~i~~TPl~~~~~l~~~~g~~l~~K~E~~nptGS~KdR~a~~~i~~~~~~~~----~~~vv~aSsGN~g~al 86 (403)
T PRK07334 11 RAAAARLAGQVLRTPCVHSRTLSQITGAEVWLKFENLQFTASFKERGALNKLLLLTEEER----ARGVIAMSAGNHAQGV 86 (403)
T ss_pred HHHHHHHhCCCCCCCccchHHHHHhhCCeEEEEeccCCCCCCchHHHHHHHHHhcCHHHh----CCcEEEECCcHHHHHH
Confidence 346778999999999999999998888999999999999999999999999998754432 1469999999999999
Q ss_pred HHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHHHHhHH
Q 028618 86 AFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTG 165 (206)
Q Consensus 86 A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~ 165 (206)
|++|+.+|++|++|||..+++.|+++++.+||+|+.++.+ ++++.+.+++++++. +++|++||+|+.+ ..||+|++
T Consensus 87 A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~v~~~~~~--~~~~~~~a~~l~~~~-~~~~~~~~~~~~~-~~g~~t~~ 162 (403)
T PRK07334 87 AYHAQRLGIPATIVMPRFTPTVKVERTRGFGAEVVLHGET--LDEARAHARELAEEE-GLTFVHPYDDPAV-IAGQGTVA 162 (403)
T ss_pred HHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECcC--HHHHHHHHHHHHHhc-CCEecCCCCCHHH-HHhHHHHH
Confidence 9999999999999999999999999999999999999865 788999999998885 8899999999998 68999999
Q ss_pred HHHHhhhCCCCCEEEEccCcchHHHHHHHHHHhcCCCCeEC
Q 028618 166 PELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKVR 206 (206)
Q Consensus 166 ~Ei~~q~~~~~d~vv~~vG~Gg~~aGi~~~~k~~~p~~~vi 206 (206)
+||++|+ +.+|+||+|+|+||+++|++.+||+.+|++|||
T Consensus 163 ~Ei~~q~-~~~d~vv~~vG~GG~~~Gi~~~lk~~~~~~~vi 202 (403)
T PRK07334 163 LEMLEDA-PDLDTLVVPIGGGGLISGMATAAKALKPDIEII 202 (403)
T ss_pred HHHHhcC-CCCCEEEEecCHHHHHHHHHHHHHHhCCCCEEE
Confidence 9999999 479999999999999999999999999999986
No 39
>PRK02991 D-serine dehydratase; Provisional
Probab=100.00 E-value=6.2e-47 Score=330.87 Aligned_cols=188 Identities=22% Similarity=0.272 Sum_probs=170.0
Q ss_pred ccCCcceecccccCCCC--------ceEEEEeCCCCC-CCChhhHHHHHHHHH-----HHHcCCCCCCC-----------
Q 028618 16 IGNTPLVYLNNIVNGCV--------ARIAAKLEMMEP-CSSVKDRIGYSMISD-----AEAKGLITPGE----------- 70 (206)
Q Consensus 16 ~~~TPl~~~~~l~~~~g--------~~i~~K~E~~~p-tGS~K~R~a~~~~~~-----a~~~g~~~~~~----------- 70 (206)
+++|||++++.+++.+| .+||+|+|++|| |||||+|++.+++.. +++.|.+.++.
T Consensus 73 ~~~TPL~~~~~l~~~~g~~~~~~~~~~V~lK~E~~np~tGSFK~RGA~~~i~~l~~~~a~~~G~~~~~~~~~~l~~~~~~ 152 (441)
T PRK02991 73 IIESPLVAIPAMQKALEKEYGQPISGRLLLKKDSHLPISGSIKARGGIYEVLKHAEKLALEAGLLTLDDDYSKLASPEFR 152 (441)
T ss_pred ccCCCceehHHHHHHhcccccCCcCceEEEEEcCCCCCcCChHHHHHHHHHHHhhHHHHHHhCCCCcCcchhhhcchhhh
Confidence 89999999999887665 699999999999 999999999999875 45777766553
Q ss_pred -----eEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCe
Q 028618 71 -----SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNA 145 (206)
Q Consensus 71 -----~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~ 145 (206)
.+||++|+||||+|+|++|+.+|++|+||||+++++.|++.++.+||+|+.++.+ ++++.+.+++++++.+++
T Consensus 153 ~~~~~~~VV~aSsGN~G~alA~aA~~~G~~~tIvvP~~a~~~K~~~ir~~GAeVi~~~~~--~~~a~~~A~~la~~~~~~ 230 (441)
T PRK02991 153 QFFSQYSIAVGSTGNLGLSIGIMSAALGFKVTVHMSADARQWKKDKLRSHGVTVVEYEGD--YGVAVEEGRKAAESDPNC 230 (441)
T ss_pred hhccCcEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEECCC--HHHHHHHHHHHHHhcCCe
Confidence 4799999999999999999999999999999999999999999999999999987 789999999999887678
Q ss_pred EEcCCCCCCccHHHHHHhHHHHHHhhhCC--------CCCEEEEccCcchHHHHHHHHHHhc-CCCCeEC
Q 028618 146 YMLQQFENPANPKIHYETTGPELWKGSGG--------RIDALVSGIGTGGTITGAGKFLKEK-NPNIKVR 206 (206)
Q Consensus 146 ~~~~~~~~~~~~~~g~~t~~~Ei~~q~~~--------~~d~vv~~vG~Gg~~aGi~~~~k~~-~p~~~vi 206 (206)
+|++++++++. ++||+|++.||++|+++ .||+||+|+|+||+++|++.+||+. +|++|||
T Consensus 231 ~~~~~~~~~~~-iaG~~Tig~EI~eQl~~~~~~vD~~~Pd~VvvpvGgGGliaGia~~lk~~~~~~~kVi 299 (441)
T PRK02991 231 YFIDDENSRTL-FLGYAVAGLRLKAQLAEQGIVVDADHPLFVYLPCGVGGGPGGVAFGLKLAFGDHVHCF 299 (441)
T ss_pred EeCCCCCchhH-HHhHHHHHHHHHHHhhhccCccccCCCCEEEEEeCccHHHHHHHHHHHHhcCCCCEEE
Confidence 99999888776 78999999999999952 3679999999999999999999997 6889886
No 40
>cd06448 L-Ser-dehyd Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- , D-serine, or L-threonine to pyruvate/ketobutyrate and ammonia.
Probab=100.00 E-value=4.4e-47 Score=321.00 Aligned_cols=185 Identities=22% Similarity=0.276 Sum_probs=169.2
Q ss_pred CCcceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCCchHHHHHHHHHHCCCcEE
Q 028618 18 NTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLI 97 (206)
Q Consensus 18 ~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~aSsGN~g~alA~~a~~~g~~~~ 97 (206)
+|||++++++++..|++||+|+|++||+||||+|++.+++.++.++|. .+ .++||++|+||||.|+|++|+.+|++|+
T Consensus 1 ~TPl~~~~~l~~~~g~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~-~~-~~~vv~aSsGN~g~alA~~a~~~G~~~~ 78 (316)
T cd06448 1 KTPLIESTALSKTAGCNVFLKLENLQPSGSFKIRGIGHLCQKSAKQGL-NE-CVHVVCSSGGNAGLAAAYAARKLGVPCT 78 (316)
T ss_pred CCCccccchhhHhhCCeEEEEeccCCCcCChHHHHHHHHHHHHHHhhc-cc-CCeEEEeCCcHHHHHHHHHHHHcCCCEE
Confidence 699999999998888999999999999999999999999999999885 22 2689999999999999999999999999
Q ss_pred EEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHHHHhHHHHHHhhhCC--C
Q 028618 98 ITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGG--R 175 (206)
Q Consensus 98 ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~q~~~--~ 175 (206)
+|||+++++.|++.|+.+||+|+.++.+. ++++.+.+++++++.++++|++||+||.+ ..||.|+++||++|+++ .
T Consensus 79 iv~p~~~~~~k~~~l~~~GA~v~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~n~~~-~~g~~t~~~Ei~~q~~~~~~ 156 (316)
T cd06448 79 IVVPESTKPRVVEKLRDEGATVVVHGKVW-WEADNYLREELAENDPGPVYVHPFDDPLI-WEGHSSMVDEIAQQLQSQEK 156 (316)
T ss_pred EEECCCCCHHHHHHHHHcCCEEEEECCch-HHHHHHHHHHHHhccCCcEEeCCCCCchh-hccccHHHHHHHHHccccCC
Confidence 99999999999999999999999998763 55677778888777658999999999998 67999999999999976 5
Q ss_pred CCEEEEccCcchHHHHHHHHHHhcC-CCCeEC
Q 028618 176 IDALVSGIGTGGTITGAGKFLKEKN-PNIKVR 206 (206)
Q Consensus 176 ~d~vv~~vG~Gg~~aGi~~~~k~~~-p~~~vi 206 (206)
||+||+|+|+||+++|++.+|++.+ |+++||
T Consensus 157 ~D~vv~~vG~Gg~~~Gv~~~~k~~~~~~~~ii 188 (316)
T cd06448 157 VDAIVCSVGGGGLLNGIVQGLERNGWGDIPVV 188 (316)
T ss_pred CCEEEEEeCchHHHHHHHHHHHhcCCCCCEEE
Confidence 9999999999999999999999996 999986
No 41
>PRK08813 threonine dehydratase; Provisional
Probab=100.00 E-value=1.1e-46 Score=320.62 Aligned_cols=183 Identities=22% Similarity=0.267 Sum_probs=168.3
Q ss_pred ccchhhhhhccccCCcceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCCchHHH
Q 028618 5 SSNIAKDVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIG 84 (206)
Q Consensus 5 ~~~~~~~i~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~aSsGN~g~a 84 (206)
....+++|..++.+|||++++.+ +||+|+|++|||||||+|++.+++..+.+++.. +.||++|+||||.|
T Consensus 26 i~~A~~~i~~~i~~TPL~~~~~l------~v~lK~E~~nptGSfK~RgA~~~l~~a~~~~~~----~~VV~aSsGN~G~a 95 (349)
T PRK08813 26 VLAAQARLRRYLSPTPLHYAERF------GVWLKLENLQRTGSYKVRGALNALLAGLERGDE----RPVICASAGNHAQG 95 (349)
T ss_pred HHHHHHHHhCcCCCCCeEECCCC------cEEEEecCCCCcCCCHHHHHHHHHHHHHHcCCC----CeEEEECCCHHHHH
Confidence 34567889999999999998765 499999999999999999999999999998863 46999999999999
Q ss_pred HHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHHHHhH
Q 028618 85 LAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETT 164 (206)
Q Consensus 85 lA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~ 164 (206)
+|++|+.+|++|+||||+++++.|++.++.+||+|+.++.+ ++++.+.+++++++. +++|++||+|+.+ ++||+|+
T Consensus 96 lA~aa~~~Gi~~~IvvP~~~~~~K~~~i~~~GAeVv~~g~~--~~~a~~~a~~la~~~-g~~~v~~~~np~~-i~G~~Ti 171 (349)
T PRK08813 96 VAWSAYRLGVQAITVMPHGAPQTKIAGVAHWGATVRQHGNS--YDEAYAFARELADQN-GYRFLSAFDDPDV-IAGQGTV 171 (349)
T ss_pred HHHHHHHcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCC--HHHHHHHHHHHHHhc-CCEEcCccCChHH-HHHHHHH
Confidence 99999999999999999999999999999999999999876 889999999999886 8999999999998 6899999
Q ss_pred HHHHHhhhCCCCCEEEEccCcchHHHHHHHHHHhcCCCCeEC
Q 028618 165 GPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKVR 206 (206)
Q Consensus 165 ~~Ei~~q~~~~~d~vv~~vG~Gg~~aGi~~~~k~~~p~~~vi 206 (206)
++||++|. ||+||+|+|+||+++|++.+||+ +++|||
T Consensus 172 g~EI~e~~---pD~VvvpvGgGGliaGia~~lk~--~~~rVi 208 (349)
T PRK08813 172 GIELAAHA---PDVVIVPIGGGGLASGVALALKS--QGVRVV 208 (349)
T ss_pred HHHHHcCC---CCEEEEEeCccHHHHHHHHHHhc--CCCEEE
Confidence 99999874 79999999999999999999996 567775
No 42
>TIGR02035 D_Ser_am_lyase D-serine ammonia-lyase. This family consists of D-serine ammonia-lyase (EC 4.3.1.18), a pyridoxal-phosphate enzyme that converts D-serine to pyruvate and NH3. This enzyme is also called D-serine dehydratase and D-serine deaminase and was previously designated EC 4.2.1.14. It is homologous to an enzyme that acts on threonine and may itself act weakly on threonine.
Probab=100.00 E-value=2e-46 Score=326.64 Aligned_cols=189 Identities=23% Similarity=0.271 Sum_probs=171.1
Q ss_pred cccCCcceecccccCCC--------CceEEEEeCCCCC-CCChhhHHHHHHHHH-----HHHcCCCCCCC----------
Q 028618 15 LIGNTPLVYLNNIVNGC--------VARIAAKLEMMEP-CSSVKDRIGYSMISD-----AEAKGLITPGE---------- 70 (206)
Q Consensus 15 ~~~~TPl~~~~~l~~~~--------g~~i~~K~E~~~p-tGS~K~R~a~~~~~~-----a~~~g~~~~~~---------- 70 (206)
.+++|||++++++++.+ +.+||+|+|+.|| |||||+|++.+++.. +.+.|.+.+++
T Consensus 67 ~~~~TPL~~~~~ls~~~~~~~~~~~~~~v~lKlE~~nP~tGSfKdRGA~~~i~~~~~~~A~~~G~l~~~~~~~~l~e~~~ 146 (431)
T TIGR02035 67 GIIESPLVEIFNMQKELEKKYQQEIPGRLLLKMDSHLPISGSIKARGGIYEVLKHAEELALEAGLLKLDDDYSILAEKKF 146 (431)
T ss_pred CccCCCccchHHHHHHhhhcccCCcCceEEEEecccCCccCCcHHHHHHHHHHHhhHHHHHHcCCCCcCcchhhhcchhh
Confidence 88999999999998743 5799999999999 999999999999875 67888877663
Q ss_pred ------eEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCC
Q 028618 71 ------SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPN 144 (206)
Q Consensus 71 ------~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~ 144 (206)
.+||++|+||||+|+|++|+.+|++|+||||++++++|++.++.+||+|+.++.+ ++++.+.+++++++.++
T Consensus 147 ~~~~~~~~Vv~aSsGN~G~slA~~Aa~lG~~~~IvmP~~a~~~K~~~ir~~GAeVv~~~~~--~~~a~~~A~~la~~~~~ 224 (431)
T TIGR02035 147 KDFFSRYSIAVGSTGNLGLSIGIISAALGFQVTVHMSADAKQWKKDKLRSKGVTVVEYESD--YGVAVEEGRKNADADPM 224 (431)
T ss_pred hhcccCceEEEECccHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEECCC--HHHHHHHHHHHHHhcCC
Confidence 4899999999999999999999999999999999999999999999999999987 88999999999998777
Q ss_pred eEEcCCCCCCccHHHHHHhHHHHHHhhhCC--------CCCEEEEccCcchHHHHHHHHHHhc-CCCCeEC
Q 028618 145 AYMLQQFENPANPKIHYETTGPELWKGSGG--------RIDALVSGIGTGGTITGAGKFLKEK-NPNIKVR 206 (206)
Q Consensus 145 ~~~~~~~~~~~~~~~g~~t~~~Ei~~q~~~--------~~d~vv~~vG~Gg~~aGi~~~~k~~-~p~~~vi 206 (206)
+||+++ .|+.++++||+|++.||++|+++ .||+|++|+|+||+++|++.+||+. +|++|||
T Consensus 225 ~~~~d~-~n~~n~~aG~~T~g~EI~eQl~~~~~~~d~~~pd~V~vp~G~GGli~Gia~~lK~~~~~~vkvi 294 (431)
T TIGR02035 225 CYFVDD-ENSRNLFLGYAVAASRLKKQFDKKGIVVDKEHPLFVYLPCGVGGGPGGVAFGLKLAFGDNVHCF 294 (431)
T ss_pred eEECCC-CCcccHHhhHHHHHHHHHHhhhccccccccCCCCEEEEEeCcCHHHHHHHHHHHHhcCCCCEEE
Confidence 888887 45555689999999999999952 4789999999999999999999997 8999986
No 43
>PRK08246 threonine dehydratase; Provisional
Probab=100.00 E-value=2.4e-46 Score=315.84 Aligned_cols=187 Identities=24% Similarity=0.356 Sum_probs=169.5
Q ss_pred ccchhhhhhccccCCcceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCCchHHH
Q 028618 5 SSNIAKDVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIG 84 (206)
Q Consensus 5 ~~~~~~~i~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~aSsGN~g~a 84 (206)
....+++|.+.+++|||++++.++.. +.+||+|+|++|||||||+|++.+++..+.+ + .++||++|+||||+|
T Consensus 10 i~~a~~~i~~~i~~TPl~~~~~l~~~-~~~i~~K~E~~nptGS~K~R~a~~~~~~~~~-~-----~~~vv~aSsGN~g~a 82 (310)
T PRK08246 10 VRAAAQRIAPHIRRTPVLEADGAGFG-PAPVWLKLEHLQHTGSFKARGAFNRLLAAPV-P-----AAGVVAASGGNAGLA 82 (310)
T ss_pred HHHHHHHHhCcCCCCCeeeccccccC-CCEEEEEECCCCCCCCCHHHHHHHHHHhhcc-c-----CCeEEEeCCCHHHHH
Confidence 34567889999999999999998876 7899999999999999999999999988765 2 257999999999999
Q ss_pred HHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHHHHhH
Q 028618 85 LAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETT 164 (206)
Q Consensus 85 lA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~ 164 (206)
+|++|+.+|++|++|||+..++.|+++++.+||+|+.++.+ ++++.+.+.+++++. +++|++||+|+.+ +.||+|+
T Consensus 83 ~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~--~~~~~~~a~~~~~~~-g~~~~~~~~n~~~-i~g~~t~ 158 (310)
T PRK08246 83 VAYAAAALGVPATVFVPETAPPAKVARLRALGAEVVVVGAE--YADALEAAQAFAAET-GALLCHAYDQPEV-LAGAGTL 158 (310)
T ss_pred HHHHHHHcCCCEEEEECCCCcHHHHHHHHHCCCEEEEeCCC--HHHHHHHHHHHHHhc-CCEeCCCCCChhh-hcchHHH
Confidence 99999999999999999999999999999999999999976 778889999988876 8999999999998 6799999
Q ss_pred HHHHHhhhCCCCCEEEEccCcchHHHHHHHHHHhcCCCCeEC
Q 028618 165 GPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKVR 206 (206)
Q Consensus 165 ~~Ei~~q~~~~~d~vv~~vG~Gg~~aGi~~~~k~~~p~~~vi 206 (206)
++||++|+ +.||+||+|+|+||+++|++.+|+. ++|||
T Consensus 159 ~~Ei~eq~-~~~D~iv~~vG~GG~~~Gi~~~~~~---~~~vi 196 (310)
T PRK08246 159 GLEIEEQA-PGVDTVLVAVGGGGLIAGIAAWFEG---RARVV 196 (310)
T ss_pred HHHHHHhc-CCCCEEEEecCccHHHHHHHHHhcC---CCEEE
Confidence 99999999 5799999999999999999999975 35654
No 44
>PRK06352 threonine synthase; Validated
Probab=100.00 E-value=1.9e-46 Score=321.22 Aligned_cols=186 Identities=23% Similarity=0.295 Sum_probs=170.0
Q ss_pred hhhccccCCcceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCCchHHHHHHHHH
Q 028618 11 DVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAA 90 (206)
Q Consensus 11 ~i~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~aSsGN~g~alA~~a~ 90 (206)
+++..+++|||++++++++..|++||+|+|++|||||||||++.+++.++.++|. ++||++|+||||+|+|++|+
T Consensus 21 ~~~l~~G~TPL~~~~~l~~~~g~~l~~K~E~~nptGS~KdR~a~~~i~~a~~~g~-----~~vV~aSsGN~G~AlA~~aa 95 (351)
T PRK06352 21 MISLAEGNTPLIPLPNLSKELGVTLYGKYEGLNPTGSFKDRGMVMAVAKAKEEGA-----EAVICASTGNTSAAAAAYAT 95 (351)
T ss_pred ccccCCCCCCeeEcHhhHHHhCCeEEEEecCCCCccChHHHHHHHHHHHHHHCCC-----CEEEEECCcHHHHHHHHHHH
Confidence 3667899999999999988888999999999999999999999999999999885 58999999999999999999
Q ss_pred HCCCcEEEEeCCC-CCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHHHHhHHHHHH
Q 028618 91 AKQYRLIITMPAS-MSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELW 169 (206)
Q Consensus 91 ~~g~~~~ivvp~~-~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~ 169 (206)
.+|++|+||||++ .++.|+++++.+||+|+.++.+ ++++.+.+++++++. ++++++ +.|+.+ ..||.|+++||+
T Consensus 96 ~~G~~~~ivvp~~~~~~~k~~~~~a~GA~V~~~~~~--~~~~~~~a~~~~~~~-~~~~~~-~~n~~~-~~G~~t~~~EI~ 170 (351)
T PRK06352 96 RAGLKAYIVIPEGKVALGKLAQAVMYGADIISIQGN--FDEALKSVRELAETE-AVTLVN-SVNPYR-LEGQKTAAFEIC 170 (351)
T ss_pred HcCCcEEEEEeCCCCcHHHHHHHHhcCCEEEEECCC--HHHHHHHHHHHHHhc-Cccccc-CCCccc-eeeHHHHHHHHH
Confidence 9999999999998 5899999999999999999987 778889999998874 666665 568888 579999999999
Q ss_pred hhhCCCCCEEEEccCcchHHHHHHHHHHhcCCC-----CeEC
Q 028618 170 KGSGGRIDALVSGIGTGGTITGAGKFLKEKNPN-----IKVR 206 (206)
Q Consensus 170 ~q~~~~~d~vv~~vG~Gg~~aGi~~~~k~~~p~-----~~vi 206 (206)
+|++..||+||+|+|+||+++|++++||+++|+ +|||
T Consensus 171 ~Q~~~~~D~vvv~vG~GG~~~Gi~~~lk~~~~~~~~~~~~vi 212 (351)
T PRK06352 171 EQLGSAPDVLAIPVGNAGNISAYWKGFKEWNEAKASGLPRMH 212 (351)
T ss_pred HHcCCCCCEEEEECCchHHHHHHHHHHHHHHhcCCCCCCEEE
Confidence 999767999999999999999999999999887 5765
No 45
>PRK08197 threonine synthase; Validated
Probab=100.00 E-value=4.8e-46 Score=323.29 Aligned_cols=186 Identities=28% Similarity=0.261 Sum_probs=172.3
Q ss_pred hhccccCCcceecccccCCCC-ceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCCchHHHHHHHHH
Q 028618 12 VTELIGNTPLVYLNNIVNGCV-ARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAA 90 (206)
Q Consensus 12 i~~~~~~TPl~~~~~l~~~~g-~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~aSsGN~g~alA~~a~ 90 (206)
++...++|||++++++++.+| .+||+|+|++|||||||||++.+++..|.++|. ++||++|+||||.|+|++|+
T Consensus 73 vslgeG~TPL~~~~~l~~~~G~~~l~~K~E~~nPtGSfKdRga~~~i~~a~~~g~-----~~vv~aSsGN~g~alA~~aa 147 (394)
T PRK08197 73 VSLGEGMTPLLPLPRLGKALGIGRLWVKDEGLNPTGSFKARGLAVGVSRAKELGV-----KHLAMPTNGNAGAAWAAYAA 147 (394)
T ss_pred CccCcCCCCceEhHHHHHHhCCCcEEEEeCCCCCCcCcHHhHHHHHHHHHHHcCC-----CEEEEeCCcHHHHHHHHHHH
Confidence 677889999999999998888 499999999999999999999999999999886 68999999999999999999
Q ss_pred HCCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHHHHhHHHHHHh
Q 028618 91 AKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWK 170 (206)
Q Consensus 91 ~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~ 170 (206)
.+|++|+||+|+++++.|+++++.+||+|+.++.+ ++++.+.+++.+++. +++++++++||.+ ++|++|+++||++
T Consensus 148 ~~G~~~~v~vp~~~~~~k~~~~~~~GA~Vi~v~~~--~~~~~~~a~~~~~~~-g~~~~~~~~np~~-ieG~~t~a~Ei~e 223 (394)
T PRK08197 148 RAGIRATIFMPADAPEITRLECALAGAELYLVDGL--ISDAGKIVAEAVAEY-GWFDVSTLKEPYR-IEGKKTMGLELAE 223 (394)
T ss_pred HcCCcEEEEEcCCCCHHHHHHHHHcCCEEEEECCC--HHHHHHHHHHHHHhc-CcccccCCCCccc-hhcHHHHHHHHHH
Confidence 99999999999999999999999999999999987 778888898888876 7999999999998 6899999999999
Q ss_pred hhCCC-CCEEEEccCcchHHHHHHHHHHhc-------CCCCeEC
Q 028618 171 GSGGR-IDALVSGIGTGGTITGAGKFLKEK-------NPNIKVR 206 (206)
Q Consensus 171 q~~~~-~d~vv~~vG~Gg~~aGi~~~~k~~-------~p~~~vi 206 (206)
|++++ ||+||+|+|+||+++|++.+|+++ .|..|||
T Consensus 224 Ql~~~~pD~vvvpvG~Gg~~~Gi~~~~k~~~~~g~~~~~~p~ii 267 (394)
T PRK08197 224 QLGWRLPDVILYPTGGGVGLIGIWKAFDELEALGWIGGKRPRLV 267 (394)
T ss_pred HcCCCCCCEEEEeCCChHHHHHHHHHHHHHHHcCCcCCCCCeEE
Confidence 99754 999999999999999999999997 3777764
No 46
>cd01563 Thr-synth_1 Threonine synthase is a pyridoxal phosphate (PLP) dependent enzyme that catalyses the last reaction in the synthesis of threonine from aspartate. It proceeds by converting O-phospho-L-homoserine (OPH) into threonine and inorganic phosphate. In plants, OPH is an intermediate between the methionine and threonine/isoleucine pathways. Thus threonine synthase competes for OPH with cystathionine-gamma-synthase, the first enzyme in the methionine pathway. These enzymes are in general dimers. Members of this CD, Thr-synth_1, are widely distributed in bacteria, archaea and higher plants.
Probab=100.00 E-value=5.7e-46 Score=315.44 Aligned_cols=187 Identities=26% Similarity=0.246 Sum_probs=172.5
Q ss_pred hhhhccccCCcceecccccCCCC-ceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCCchHHHHHHH
Q 028618 10 KDVTELIGNTPLVYLNNIVNGCV-ARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFM 88 (206)
Q Consensus 10 ~~i~~~~~~TPl~~~~~l~~~~g-~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~aSsGN~g~alA~~ 88 (206)
+++...+++|||++++++++..| .+||+|+|++||+||||+|++.+++.++.++|. ++||++|+||||+|+|++
T Consensus 14 ~~~~l~~g~TPl~~~~~l~~~~g~~~i~~K~E~~nptGS~K~R~a~~~l~~a~~~g~-----~~vv~~SsGN~g~alA~~ 88 (324)
T cd01563 14 DIVSLGEGNTPLVRAPRLGERLGGKNLYVKDEGLNPTGSFKDRGMTVAVSKAKELGV-----KAVACASTGNTSASLAAY 88 (324)
T ss_pred CcccCCCCCCceeechhhHhhcCCCceEEEecCCCCcccHHHhhHHHHHHHHHHcCC-----CEEEEeCCCHHHHHHHHH
Confidence 45888999999999999988776 799999999999999999999999999999884 689999999999999999
Q ss_pred HHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHHHHhHHHHH
Q 028618 89 AAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPEL 168 (206)
Q Consensus 89 a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei 168 (206)
|+.+|++|++|||+++++.|+++++.+||+|+.++.+ ++++.+.+++++++. ++|++|++|+.+ ..||.+++.||
T Consensus 89 a~~~G~~~~ivvp~~~~~~k~~~l~~~GA~Vi~~~~~--~~~~~~~a~~~~~~~--~~~~~~~~n~~~-~~g~~t~~~Ei 163 (324)
T cd01563 89 AARAGIKCVVFLPAGKALGKLAQALAYGATVLAVEGN--FDDALRLVRELAEEN--WIYLSNSLNPYR-LEGQKTIAFEI 163 (324)
T ss_pred HHHcCCceEEEEeCCCCHHHHHHHHHcCCEEEEECCc--HHHHHHHHHHHHHhc--CeeccCCCCcce-ecchhhhHHHH
Confidence 9999999999999999999999999999999999986 778889999998885 789999999999 57999999999
Q ss_pred HhhhCC-CCCEEEEccCcchHHHHHHHHHHhcC------CCCeEC
Q 028618 169 WKGSGG-RIDALVSGIGTGGTITGAGKFLKEKN------PNIKVR 206 (206)
Q Consensus 169 ~~q~~~-~~d~vv~~vG~Gg~~aGi~~~~k~~~------p~~~vi 206 (206)
++|+++ .||+||+|+||||+++|++.+||+.+ |+++||
T Consensus 164 ~~q~~~~~~d~vv~~vGtGg~~~G~~~~~k~~~~~g~~~~~~~vi 208 (324)
T cd01563 164 AEQLGWEVPDYVVVPVGNGGNITAIWKGFKELKELGLIDRLPRMV 208 (324)
T ss_pred HHHcCCCCCCEEEEecCCcHHHHHHHHHHHHHHhCCccccCCeEE
Confidence 999964 69999999999999999999999875 567775
No 47
>PRK07591 threonine synthase; Validated
Probab=100.00 E-value=9e-46 Score=323.61 Aligned_cols=187 Identities=21% Similarity=0.217 Sum_probs=173.9
Q ss_pred hhccccCCcceecccccCCCC-ceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCCchHHHHHHHHH
Q 028618 12 VTELIGNTPLVYLNNIVNGCV-ARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAA 90 (206)
Q Consensus 12 i~~~~~~TPl~~~~~l~~~~g-~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~aSsGN~g~alA~~a~ 90 (206)
++...|+|||++++++++.+| .+||+|+|++|||||||||++.+++..|.+.|. ++|+++|+||||+|+|++|+
T Consensus 83 v~l~eG~TPLv~~~~l~~~lG~~~l~~K~E~~nPtGSfKdRga~~~v~~A~~~g~-----~~vv~aSsGN~g~alA~~aa 157 (421)
T PRK07591 83 VDLGPGFTPLVKADRLARELGLKNLYIKDDSVNPTHSFKDRVVSVALTAARELGF-----TTVACASTGNLANSVAAHAA 157 (421)
T ss_pred CcCCCCCCcceEhHHHHHHhCCCcEEEEeCCCCCccChHHHHHHHHHHHHHHcCC-----CEEEEeCCCHHHHHHHHHHH
Confidence 677889999999999998888 499999999999999999999999999999986 57899999999999999999
Q ss_pred HCCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHHHHhHHHHHHh
Q 028618 91 AKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWK 170 (206)
Q Consensus 91 ~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~ 170 (206)
++|++|+||||+++++.|+.+++.+||+|+.++++ ++++.+.+++++++.++++|++++.||.. ++|++|+++||++
T Consensus 158 ~~Gl~~~I~vP~~~~~~k~~~~~~~GA~Vi~v~g~--~d~a~~~a~~~~~~~~~~~~~n~~~~p~~-ieG~~Tia~Ei~e 234 (421)
T PRK07591 158 RAGLDSCVFIPADLEAGKIVGTLVYGPTLVAVDGN--YDDVNRLCSELANEHEGWGFVNINLRPYY-AEGSKTLGYEVAE 234 (421)
T ss_pred HcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCC--HHHHHHHHHHHHHhcCCEEEecCCCCccc-ccchHHHHHHHHH
Confidence 99999999999999999999999999999999987 78899999999888768899999888887 6899999999999
Q ss_pred hhCCC-CCEEEEccCcchHHHHHHHHHHhc-------CCCCeEC
Q 028618 171 GSGGR-IDALVSGIGTGGTITGAGKFLKEK-------NPNIKVR 206 (206)
Q Consensus 171 q~~~~-~d~vv~~vG~Gg~~aGi~~~~k~~-------~p~~~vi 206 (206)
|++++ ||+||+|+|+||+++|++.+|+++ .|.+|||
T Consensus 235 Ql~~~~pD~iv~pvG~Gg~~~Gv~~g~kel~~~g~i~~~~prii 278 (421)
T PRK07591 235 QLGWRLPDQVVAPLASGSLLTKIDKGFQELIKVGLVEDKPVRVF 278 (421)
T ss_pred HcCCCCCCEEEEeCCchHHHHHHHHHHHHHHhcCCccCCCceEE
Confidence 99755 999999999999999999999997 5777775
No 48
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy
Probab=100.00 E-value=4.7e-45 Score=298.33 Aligned_cols=183 Identities=42% Similarity=0.582 Sum_probs=171.7
Q ss_pred CcceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCCchHHHHHHHHHHCCCcEEE
Q 028618 19 TPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLII 98 (206)
Q Consensus 19 TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~aSsGN~g~alA~~a~~~g~~~~i 98 (206)
|||++++++++..+.+||+|+|+.||+||||+|++.+++..+.++|.+ ++ ..||++|+||||.|+|++|+.+|++|++
T Consensus 1 TPl~~~~~l~~~~~~~l~~K~e~~~ptgS~K~R~a~~~l~~a~~~g~~-~~-~~vv~~ssGN~g~alA~~a~~~g~~~~v 78 (244)
T cd00640 1 TPLVRLKRLSKLGGANIYLKLEFLNPTGSFKDRGALNLILLAEEEGKL-PK-GVIIESTGGNTGIALAAAAARLGLKCTI 78 (244)
T ss_pred CCeeEccccccccCCEEEEEecccCCcCCcHHHHHHHHHHHHHHcCCC-CC-CEEEEeCCcHHHHHHHHHHHHcCCCEEE
Confidence 899999999987788999999999999999999999999999998865 33 6899999999999999999999999999
Q ss_pred EeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHHHHhHHHHHHhhhCC-CCC
Q 028618 99 TMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGG-RID 177 (206)
Q Consensus 99 vvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~q~~~-~~d 177 (206)
|+|...++.++++++.+|++|+.++.+ ++++.+.+++++++.++++|+++|+|+.+ ..||.++++||.+|++. .||
T Consensus 79 ~~p~~~~~~~~~~~~~~Ga~v~~~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~n~~~-~~g~~~~~~Ei~~q~~~~~~d 155 (244)
T cd00640 79 VMPEGASPEKVAQMRALGAEVVLVPGD--FDDAIALAKELAEEDPGAYYVNQFDNPAN-IAGQGTIGLEILEQLGGQKPD 155 (244)
T ss_pred EECCCCCHHHHHHHHHCCCEEEEECCC--HHHHHHHHHHHHHhCCCCEecCCCCCHHH-HHHHHHHHHHHHHHcCCCCCC
Confidence 999999999999999999999999988 77899999999998668999999999998 57889999999999976 699
Q ss_pred EEEEccCcchHHHHHHHHHHhcCCCCeEC
Q 028618 178 ALVSGIGTGGTITGAGKFLKEKNPNIKVR 206 (206)
Q Consensus 178 ~vv~~vG~Gg~~aGi~~~~k~~~p~~~vi 206 (206)
+||+|+|+||+++|++.+|++.+|++|||
T Consensus 156 ~ivvp~GtGg~~~G~~~~~~~~~~~~~ii 184 (244)
T cd00640 156 AVVVPVGGGGNIAGIARALKELLPNVKVI 184 (244)
T ss_pred EEEEecCccHHHHHHHHHHHHhCCCCEEE
Confidence 99999999999999999999999999986
No 49
>PRK07409 threonine synthase; Validated
Probab=100.00 E-value=3.7e-45 Score=313.70 Aligned_cols=180 Identities=26% Similarity=0.284 Sum_probs=165.3
Q ss_pred hhccccCCcceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCCchHHHHHHHHHH
Q 028618 12 VTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAA 91 (206)
Q Consensus 12 i~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~aSsGN~g~alA~~a~~ 91 (206)
++..+++|||++++.++...|++||+|+|++|||||||||++.+++..+.++|. ++||++|+||||.|+|++|+.
T Consensus 25 ~~l~~g~TPl~~~~~l~~~~g~~i~~K~E~~nptGSfKdR~a~~~l~~a~~~g~-----~~iv~aSsGN~g~alA~~a~~ 99 (353)
T PRK07409 25 VTLGEGNTPLIPAPNLSELLGVEVYVKYEGLNPTGSFKDRGMTMAVTKAKEEGA-----KAVICASTGNTSASAAAYAAR 99 (353)
T ss_pred ccCCCCCCCEEEchhhHHHhCCeEEEEecCCCCccchHHHHHHHHHHHHHHCCC-----CEEEEECCcHHHHHHHHHHHH
Confidence 577899999999999988888899999999999999999999999999998885 589999999999999999999
Q ss_pred CCCcEEEEeCCC-CCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHHHHhHHHHHHh
Q 028618 92 KQYRLIITMPAS-MSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWK 170 (206)
Q Consensus 92 ~g~~~~ivvp~~-~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~ 170 (206)
+|++|++|||++ .++.|++.++.+||+|+.++.+ ++++.+.++++++++ +++++++ .|+.+ ..||.|++.||++
T Consensus 100 ~G~~~~ivvP~~~~~~~k~~~~~~~GA~Vi~~~~~--~~~~~~~a~~l~~~~-~~~~~~~-~n~~~-~~g~~t~~~EI~~ 174 (353)
T PRK07409 100 AGLKAFVLIPEGKIALGKLAQAVMYGAEIIQIDGN--FDDALEIVRELAEKY-PVTLVNS-VNPYR-IEGQKTAAFEIVD 174 (353)
T ss_pred cCCCEEEEEcCCCCchhhHHHHHhcCCEEEEECCC--HHHHHHHHHHHHHhc-CceecCC-CCchh-hhhHHHHHHHHHH
Confidence 999999999998 6899999999999999999986 789999999998886 4777775 58888 5799999999999
Q ss_pred hhCCCCCEEEEccCcchHHHHHHHHHHhcCC
Q 028618 171 GSGGRIDALVSGIGTGGTITGAGKFLKEKNP 201 (206)
Q Consensus 171 q~~~~~d~vv~~vG~Gg~~aGi~~~~k~~~p 201 (206)
|++..||+||+|+|+||+++|++.+|++..+
T Consensus 175 q~~~~~d~iv~~vG~GG~~~Gi~~g~~~~~~ 205 (353)
T PRK07409 175 ALGDAPDYHCIPVGNAGNITAYWKGYKEYHQ 205 (353)
T ss_pred HhCCCCCEEEEeCCChHHHHHHHHHHHHHHH
Confidence 9976799999999999999999999998743
No 50
>PRK05638 threonine synthase; Validated
Probab=100.00 E-value=5.1e-45 Score=320.93 Aligned_cols=178 Identities=21% Similarity=0.237 Sum_probs=165.8
Q ss_pred hhccccCCcceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCCchHHHHHHHHHH
Q 028618 12 VTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAA 91 (206)
Q Consensus 12 i~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~aSsGN~g~alA~~a~~ 91 (206)
++..+++|||++++ +++.+|.+||+|+|++|||||||||++.+++.+|.+.|. ++|+++|+||||.|+|++|+.
T Consensus 60 v~l~~G~TPLv~~~-~~~~~g~~l~~K~E~~nPtGSfKdR~a~~~i~~a~~~g~-----~~vv~aSsGN~g~alA~~aa~ 133 (442)
T PRK05638 60 ISLGEGGTPLIRAR-ISEKLGENVYIKDETRNPTGSFRDRLATVAVSYGLPYAA-----NGFIVASDGNAAASVAAYSAR 133 (442)
T ss_pred cccCCCCCcEEccc-chHHhCCeEEEEeCCCCCCCChHHHHHHHHHHHHHHcCC-----CEEEEeCCChHHHHHHHHHHH
Confidence 56788999999984 666678899999999999999999999999999998875 679999999999999999999
Q ss_pred CCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHHHHhHHHHHHhh
Q 028618 92 KQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKG 171 (206)
Q Consensus 92 ~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~q 171 (206)
+|++|+||||+++++.|+++++.+||+|+.++.+ ++++.+.+++++++. ++|++++++||.+ ++||+|+++||++|
T Consensus 134 ~G~~~~i~vp~~~~~~k~~~~~~~GA~vi~v~~~--~~~~~~~a~~~~~~~-~~~~~~~~~np~~-~eG~~t~a~Ei~eq 209 (442)
T PRK05638 134 AGKEAFVVVPRKVDKGKLIQMIAFGAKIIRYGES--VDEAIEYAEELARLN-GLYNVTPEYNIIG-LEGQKTIAFELWEE 209 (442)
T ss_pred cCCCEEEEEeCCCCHHHHHHHHhcCcEEEEECCC--HHHHHHHHHHHHHhC-CeEecCCCCChhH-hhhHHHHHHHHHHH
Confidence 9999999999999999999999999999999876 789999999988875 7999999999998 68999999999999
Q ss_pred hCCCCCEEEEccCcchHHHHHHHHHHhcCC
Q 028618 172 SGGRIDALVSGIGTGGTITGAGKFLKEKNP 201 (206)
Q Consensus 172 ~~~~~d~vv~~vG~Gg~~aGi~~~~k~~~p 201 (206)
++ ||+||+|+|+||+++|++.+|+++++
T Consensus 210 ~~--pD~vv~pvG~Gg~~~Gi~~gfkel~~ 237 (442)
T PRK05638 210 IN--PTHVIVPTGSGSYLYSIYKGFKELLE 237 (442)
T ss_pred HC--cCEEEEeCCchHHHHHHHHHHHHHHh
Confidence 95 99999999999999999999999865
No 51
>PRK06260 threonine synthase; Validated
Probab=100.00 E-value=5.8e-45 Score=316.76 Aligned_cols=180 Identities=26% Similarity=0.256 Sum_probs=167.6
Q ss_pred hhhccccCCcceecccccCCCCc-eEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCCchHHHHHHHH
Q 028618 11 DVTELIGNTPLVYLNNIVNGCVA-RIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMA 89 (206)
Q Consensus 11 ~i~~~~~~TPl~~~~~l~~~~g~-~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~aSsGN~g~alA~~a 89 (206)
.++..+++|||++++++++.+|. +||+|+|++|||||||||++.+++..+.++|. ++||++|+||||.|+|++|
T Consensus 60 ~v~l~~G~TPLv~~~~l~~~~g~~~l~~K~E~~nPTGSfKdRga~~~v~~a~~~g~-----~~vv~aSsGN~g~alA~~a 134 (397)
T PRK06260 60 IVSLNEGGTPLYRCPNLEKELGVKELYVKHEGANPTGSFKDRGMTVGVTKALELGV-----KTVACASTGNTSASLAAYA 134 (397)
T ss_pred cccCCCCCCCeEEchhhHHHhCCCcEEEEeCCCCCCcCcHHHHHHHHHHHHHHcCC-----CEEEEeCCcHHHHHHHHHH
Confidence 47788999999999999888887 99999999999999999999999999999886 6899999999999999999
Q ss_pred HHCCCcEEEEeCCC-CCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHHHHhHHHHH
Q 028618 90 AAKQYRLIITMPAS-MSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPEL 168 (206)
Q Consensus 90 ~~~g~~~~ivvp~~-~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei 168 (206)
+.+|++|+||+|++ +++.|+.+++.+||+|+.++.+ ++++.+.+++++++. ++|+++++ ||.+ .+||.|+++||
T Consensus 135 a~~G~~~~i~vP~~~~~~~k~~~~~~~GA~vi~v~~~--~~~~~~~a~~~~~~~-g~y~~~~~-np~~-~~G~~t~a~Ei 209 (397)
T PRK06260 135 ARAGLKCYVLLPAGKVALGKLAQALLHGAKVLEVDGN--FDDALDMVVELAKEG-KIYLLNSI-NPFR-LEGQKTIGFEI 209 (397)
T ss_pred HHcCCcEEEEEeCCCccHHHHHHHHhcCCEEEEECCc--HHHHHHHHHHHHhhC-CEEeecCC-Cchh-hcchhhHHHHH
Confidence 99999999999997 7899999999999999999987 788999999998886 78889887 8888 67999999999
Q ss_pred HhhhCC-CCCEEEEccCcchHHHHHHHHHHhcC
Q 028618 169 WKGSGG-RIDALVSGIGTGGTITGAGKFLKEKN 200 (206)
Q Consensus 169 ~~q~~~-~~d~vv~~vG~Gg~~aGi~~~~k~~~ 200 (206)
++|+++ .||+||+|+|+||+++|++.+|+++.
T Consensus 210 ~eQl~~~~pd~vvvpvG~Gg~~~Gi~~~~~~l~ 242 (397)
T PRK06260 210 ADQLGWEVPDRVVLPVGNAGNISAIWKGFKELV 242 (397)
T ss_pred HHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHHH
Confidence 999976 69999999999999999999999876
No 52
>PRK06721 threonine synthase; Reviewed
Probab=100.00 E-value=1.3e-44 Score=309.95 Aligned_cols=186 Identities=26% Similarity=0.317 Sum_probs=166.8
Q ss_pred hhhccccCCcceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCCchHHHHHHHHH
Q 028618 11 DVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAA 90 (206)
Q Consensus 11 ~i~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~aSsGN~g~alA~~a~ 90 (206)
.++..+++|||++++++++..|++||+|+|++||+||||+|++.+++.++.++|. ++||++|+||||+|+|++|+
T Consensus 21 ~~~l~~G~TPl~~l~~l~~~~g~~i~~K~E~~nptGS~KdR~a~~~i~~a~~~g~-----~~vV~aSsGN~G~alA~~aa 95 (352)
T PRK06721 21 DVSLMEGNTPLIPLLNISKQLGIQLYGKYEGANPTGSFKDRGMVMAVAKAKEEGS-----EAIICASTGNTSASAAAYAA 95 (352)
T ss_pred ccccCcCCCCeeEchhhHHHhCCeEEEEecCCCCccchHHHHHHHHHHHHHHCCC-----CEEEEECCcHHHHHHHHHHH
Confidence 4677899999999999988888899999999999999999999999999999886 68999999999999999999
Q ss_pred HCCCcEEEEeCCCC-CHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHHHHhHHHHHH
Q 028618 91 AKQYRLIITMPASM-SLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELW 169 (206)
Q Consensus 91 ~~g~~~~ivvp~~~-~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~ 169 (206)
.+|++|++|||+.. ++.|+++++.+||+|+.++.+ ++++.+.+++++++. ++++++ +.|+.+ ..||.|++.||+
T Consensus 96 ~~G~~~~vvvp~~~~~~~k~~~~~~~GA~V~~~~~~--~~~~~~~a~~~~~~~-~~~~~~-~~n~~~-~~G~~t~~~Ei~ 170 (352)
T PRK06721 96 RLGMKCIIVIPEGKIAHGKLAQAVAYGAEIISIEGN--FDDALKAVRNIAAEE-PITLVN-SVNPYR-IEGQKTAAFEIC 170 (352)
T ss_pred HCCCcEEEEECCCCCCHHHHHHHHHcCCEEEEECCC--HHHHHHHHHHHHHhC-Cceecc-CCCchh-hhhhhhHHHHHH
Confidence 99999999999974 889999999999999999976 778889999998886 567665 568887 579999999999
Q ss_pred hhhCCCCCEEEEccCcchHHHH----HHHHHHhcC-CCCeEC
Q 028618 170 KGSGGRIDALVSGIGTGGTITG----AGKFLKEKN-PNIKVR 206 (206)
Q Consensus 170 ~q~~~~~d~vv~~vG~Gg~~aG----i~~~~k~~~-p~~~vi 206 (206)
+|++..||+||+|+|+||+++| ++.++|+.+ |++|||
T Consensus 171 eq~~~~~D~ivv~vG~GG~l~G~~~G~~~~lk~~~~~~~~vi 212 (352)
T PRK06721 171 DQLQRAPDVLAIPVGNAGNITAYWKGFCEYEKEKGYKKPRIH 212 (352)
T ss_pred HHhCCCCCEEEEeCCchHHHHHHHHHHHHHHHhcCCCCCeEE
Confidence 9997679999999999999997 455566664 889886
No 53
>PRK06450 threonine synthase; Validated
Probab=100.00 E-value=1.7e-44 Score=307.20 Aligned_cols=170 Identities=23% Similarity=0.247 Sum_probs=154.3
Q ss_pred hhhccccCCcceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCCchHHHHHHHHH
Q 028618 11 DVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAA 90 (206)
Q Consensus 11 ~i~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~aSsGN~g~alA~~a~ 90 (206)
.++...|+|||++.+ +||+|+|++|||||||||++.+++..+.++|. +.|+++|+||+|.|+|++|+
T Consensus 51 ~vslgeG~TPLv~~~--------~l~~K~E~~nPTGSfKDRga~~~i~~a~~~g~-----~~vv~aSsGN~g~slA~~aa 117 (338)
T PRK06450 51 FISLGEGRTPLIKKG--------NIWFKLDFLNPTGSYKDRGSVTLISYLAEKGI-----KQISEDSSGNAGASIAAYGA 117 (338)
T ss_pred CCCCCCCCCCceecC--------CEEEEecCCCCcCCCHHHHHHHHHHHHHHcCC-----CEEEEECCcHHHHHHHHHHH
Confidence 477899999999864 69999999999999999999999999999875 68999999999999999999
Q ss_pred HCCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHHHHhHHHHHHh
Q 028618 91 AKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWK 170 (206)
Q Consensus 91 ~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~ 170 (206)
.+|++|+||||+++++.|+++++.+||+|+.++.+ ++++.+. +++. +.+|+++++||.+ ++||+|+++||++
T Consensus 118 ~~G~~~~i~vP~~~~~~k~~~i~~~GA~vi~v~~~--~~~~~~~----a~~~-g~~~~~~~~np~~-ieG~kTia~EI~e 189 (338)
T PRK06450 118 AAGIEVKIFVPETASGGKLKQIESYGAEVVRVRGS--REDVAKA----AENS-GYYYASHVLQPQF-RDGIRTLAYEIAK 189 (338)
T ss_pred HcCCCEEEEEcCCCCHHHHHHHHHcCCEEEEECCC--HHHHHHH----HHhc-CeEeccCCCCccH-HHHHHHHHHHHHH
Confidence 99999999999999999999999999999999987 5554443 4443 7788999999998 6899999999999
Q ss_pred hhCC-CCCEEEEccCcchHHHHHHHHHHhcCC
Q 028618 171 GSGG-RIDALVSGIGTGGTITGAGKFLKEKNP 201 (206)
Q Consensus 171 q~~~-~~d~vv~~vG~Gg~~aGi~~~~k~~~p 201 (206)
|+++ .||+||+|+|+||+++|++++|+++.+
T Consensus 190 ql~~~~pD~vvvpvG~Ggll~Gi~~g~~el~~ 221 (338)
T PRK06450 190 DLDWKIPNYVFIPVSAGTLLLGVYSGFKHLLD 221 (338)
T ss_pred HcCCCCCCEEEEECCchHHHHHHHHHHHHHHh
Confidence 9974 599999999999999999999999865
No 54
>PRK08206 diaminopropionate ammonia-lyase; Provisional
Probab=100.00 E-value=6.6e-44 Score=309.80 Aligned_cols=195 Identities=23% Similarity=0.180 Sum_probs=169.0
Q ss_pred hhhhh--hccccCCcceecccccCCCC-ceEEEEeCCC-CCCCChhhHHHHHHHHHHHH--cCCC---------------
Q 028618 8 IAKDV--TELIGNTPLVYLNNIVNGCV-ARIAAKLEMM-EPCSSVKDRIGYSMISDAEA--KGLI--------------- 66 (206)
Q Consensus 8 ~~~~i--~~~~~~TPl~~~~~l~~~~g-~~i~~K~E~~-~ptGS~K~R~a~~~~~~a~~--~g~~--------------- 66 (206)
...++ ...+++|||++++++++.+| .+||+|+|++ ||+||||+|++.+.+..+.. .+.-
T Consensus 32 a~~~~~~~~~~~~TPL~~~~~l~~~~G~~~v~~K~E~~q~ptgSFK~RG~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~~ 111 (399)
T PRK08206 32 ARAFHQSFPGYAPTPLVALPDLAAELGVGSILVKDESYRFGLNAFKALGGAYAVARLLAEKLGLDISELSFEELTSGEVR 111 (399)
T ss_pred HHHHHhcCCCCCCCCCcchHHHHHHhCCCcEEEecccCcCCCCChHHhhHHHHHHHHHHHHhCCCcccCCHHHhhhhHHH
Confidence 45567 55889999999999999899 5999999998 59999999999998887753 2210
Q ss_pred --CCCCeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCC
Q 028618 67 --TPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPN 144 (206)
Q Consensus 67 --~~~~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~ 144 (206)
.++ .+++++|+||||+|+|++|+.+|++|+||||.++++.|+..++.+||+|+.++.+ ++++...+.+++++. +
T Consensus 112 ~~~~~-~~vv~aSsGN~g~alA~~a~~~G~~~~Ivvp~~~~~~k~~~i~~~GA~Vi~v~~~--~~~~~~~a~~~~~~~-g 187 (399)
T PRK08206 112 EKLGD-ITFATATDGNHGRGVAWAAQQLGQKAVIYMPKGSSEERVDAIRALGAECIITDGN--YDDSVRLAAQEAQEN-G 187 (399)
T ss_pred HhccC-CEEEEeCCcHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEeCCC--HHHHHHHHHHHHHHc-C
Confidence 011 3699999999999999999999999999999999999999999999999999976 788999999988886 7
Q ss_pred eEEcC-----CCCC-CccHHHHHHhHHHHHHhhhCC---CCCEEEEccCcchHHHHHHHHHHhcC--CCCeEC
Q 028618 145 AYMLQ-----QFEN-PANPKIHYETTGPELWKGSGG---RIDALVSGIGTGGTITGAGKFLKEKN--PNIKVR 206 (206)
Q Consensus 145 ~~~~~-----~~~~-~~~~~~g~~t~~~Ei~~q~~~---~~d~vv~~vG~Gg~~aGi~~~~k~~~--p~~~vi 206 (206)
++|++ ||+| +.+.+.||.|++.||++|+++ .||+||+|+|+||+++|++.+|++++ |.+|||
T Consensus 188 ~~~v~~~~~~~~~~~~~~~~~G~~t~a~EI~eQl~~~~~~pD~vvvpvG~GG~~aGi~~~~k~~~~~~~~kii 260 (399)
T PRK08206 188 WVVVQDTAWEGYEEIPTWIMQGYGTMADEAVEQLKEMGVPPTHVFLQAGVGSLAGAVLGYFAEVYGEQRPHFV 260 (399)
T ss_pred CEEecCccccCcccccHHHHHHhHHHHHHHHHHHHhcCCCCCEEEEcCCccHHHHHHHHHHHHHcCCCCCEEE
Confidence 88886 6775 566688999999999999965 59999999999999999999999984 467775
No 55
>PLN02569 threonine synthase
Probab=100.00 E-value=1.3e-43 Score=313.10 Aligned_cols=184 Identities=19% Similarity=0.142 Sum_probs=166.7
Q ss_pred hhccccCCcceecccccCC-CCc-eEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCCchHHHHHHHH
Q 028618 12 VTELIGNTPLVYLNNIVNG-CVA-RIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMA 89 (206)
Q Consensus 12 i~~~~~~TPl~~~~~l~~~-~g~-~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~aSsGN~g~alA~~a 89 (206)
++..+++|||++++++++. +|. +||+|+|++|||||||||++.+++..+.+.|........|+++|+||||.|+|++|
T Consensus 127 vsl~eG~TPLv~~~~l~~~~~G~~~l~~K~E~~nPTGSFKDRga~~~vs~a~~~g~~~~~~~~Vv~ASSGN~GaAlAaya 206 (484)
T PLN02569 127 VSLFEGNSNLFWAERLGKEFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMAKPVVGVGCASTGDTSAALSAYC 206 (484)
T ss_pred eecCCCCCceeEhhhhhHhhcCCccEEEEECCCCCCcCHHHHHHHHHHHHHHHhhhccCCccEEEEeCCcHHHHHHHHHH
Confidence 6778899999999999887 784 99999999999999999999999999988765321125799999999999999999
Q ss_pred HHCCCcEEEEeCCC-CCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHHHHhHHHHH
Q 028618 90 AAKQYRLIITMPAS-MSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPEL 168 (206)
Q Consensus 90 ~~~g~~~~ivvp~~-~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei 168 (206)
+.+|++|+||+|++ .+..|+.+++.+||+|+.++++ ++++.+.+++++++. ++|+++++ ||.+ ++||+|+++||
T Consensus 207 a~~Gl~~~I~vP~~~~~~~k~~qi~a~GA~Vi~v~g~--~d~a~~~a~e~~~~~-~~~~~n~~-Np~~-ieG~kT~a~EI 281 (484)
T PLN02569 207 AAAGIPSIVFLPADKISIAQLVQPIANGALVLSIDTD--FDGCMRLIREVTAEL-PIYLANSL-NSLR-LEGQKTAAIEI 281 (484)
T ss_pred HhcCCeEEEEEcCCCCCHHHHHHHHhcCCEEEEECCC--HHHHHHHHHHHHHHc-CCEecCCC-Ccch-hHhHHHHHHHH
Confidence 99999999999997 7889999999999999999987 889999999988876 68899987 8988 68999999999
Q ss_pred HhhhCCC-CCEEEEccCcchHHHHHHHHHHhcC
Q 028618 169 WKGSGGR-IDALVSGIGTGGTITGAGKFLKEKN 200 (206)
Q Consensus 169 ~~q~~~~-~d~vv~~vG~Gg~~aGi~~~~k~~~ 200 (206)
++|++++ ||+||+|+|+||+++|++++|+++.
T Consensus 282 ~eQl~~~~pD~VvvPvG~Gg~l~Gi~kgfkel~ 314 (484)
T PLN02569 282 LQQFDWEVPDWVIVPGGNLGNIYAFYKGFKMCK 314 (484)
T ss_pred HHHcCCCCCCEEEEeCCchHHHHHHHHHHHHHH
Confidence 9999765 9999999999999999999999863
No 56
>KOG1251 consensus Serine racemase [Signal transduction mechanisms; Amino acid transport and metabolism]
Probab=100.00 E-value=2.4e-44 Score=284.92 Aligned_cols=192 Identities=22% Similarity=0.341 Sum_probs=179.0
Q ss_pred cchhhhhhccccCCcceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCCchHHHH
Q 028618 6 SNIAKDVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGL 85 (206)
Q Consensus 6 ~~~~~~i~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~aSsGN~g~al 85 (206)
...|+++.+++..||.+.++.+-+..|.+||+|+|++|.+||||.|||.+.+..+.++.. .+++++.||||||+|+
T Consensus 13 ~~A~~rik~~ihkTpVlTS~~ln~~~g~~vfFKcE~fQKtGaFKfRGAlNav~~l~~ek~----~kgvithSSGNHaqAl 88 (323)
T KOG1251|consen 13 RAAHQRIKPFIHKTPVLTSENLNEKVGRHVFFKCENFQKTGAFKFRGALNAVSSLKAEKR----AKGVITHSSGNHAQAL 88 (323)
T ss_pred HHHHHHHHhhhccCceechhhHHHHhhhheEeehhhhhhccceehhhhHHHHHHhhHhhh----cCceEeecCCcHHHHH
Confidence 346889999999999999999999999999999999999999999999999998874443 2689999999999999
Q ss_pred HHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHHHHhHH
Q 028618 86 AFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTG 165 (206)
Q Consensus 86 A~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~ 165 (206)
|++|+..|+|++||||.++|..|+..++.||++|+++++. .+++.+.+.++.++. +.+.++||++|.. +.|++|++
T Consensus 89 alaAk~~giPa~IVvP~~AP~~Kv~a~~~Yga~ii~~e~~--~~sRE~va~~ltee~-g~~~i~Py~~p~v-IaGqgTiA 164 (323)
T KOG1251|consen 89 ALAAKILGIPATIVVPKDAPICKVAATRGYGANIIFCEPT--VESRESVAKDLTEET-GYYLIHPYNHPSV-IAGQGTIA 164 (323)
T ss_pred HHHHHhcCCCeEEEecCCChHHHHHHHHhcCceEEEecCc--cchHHHHHHHHHHhc-CcEEeCCCCCcce-eeccchHH
Confidence 9999999999999999999999999999999999999987 558888899999987 7888999999998 79999999
Q ss_pred HHHHhhhCCCCCEEEEccCcchHHHHHHHHHHhcCCCCeEC
Q 028618 166 PELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKVR 206 (206)
Q Consensus 166 ~Ei~~q~~~~~d~vv~~vG~Gg~~aGi~~~~k~~~p~~~vi 206 (206)
.|+++|+ +.+|++|+|+|+||+++|++.+.+.+.|+++||
T Consensus 165 ~ElleqV-g~iDalfvpvgGGGllSgvAlaa~~l~P~i~vy 204 (323)
T KOG1251|consen 165 LELLEQV-GEIDALFVPVGGGGLLSGVALAAKSLKPSIEVY 204 (323)
T ss_pred HHHHHhh-CccceEEEeecCcchhhHHHHHHhccCCCcEEE
Confidence 9999999 589999999999999999999999999999986
No 57
>PRK08329 threonine synthase; Validated
Probab=100.00 E-value=1.4e-43 Score=303.08 Aligned_cols=172 Identities=22% Similarity=0.277 Sum_probs=158.5
Q ss_pred hhccccCCcceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCCchHHHHHHHHHH
Q 028618 12 VTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAA 91 (206)
Q Consensus 12 i~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~aSsGN~g~alA~~a~~ 91 (206)
++...+.|||+++. .+||+|+|++|||||||||++.+++..+.++|. ++||++|+||||+|+|++|++
T Consensus 58 ~sl~eg~Tpl~~~~-------~~l~~K~E~~nPtGSfKdRga~~~i~~a~~~g~-----~~vv~aSsGN~g~alA~~aa~ 125 (347)
T PRK08329 58 PHLTPPITPTVKRS-------IKVYFKLDYLQPTGSFKDRGTYVTVAKLKEEGI-----NEVVIDSSGNAALSLALYSLS 125 (347)
T ss_pred CcCCCCCCccccCC-------CeEEEEeCCCCCCcCCHHHHHHHHHHHHHHcCC-----CEEEEECCCcHHHHHHHHHHH
Confidence 46677899999873 489999999999999999999999999999986 689999999999999999999
Q ss_pred CCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHHHHhHHHHHHhh
Q 028618 92 KQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKG 171 (206)
Q Consensus 92 ~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~q 171 (206)
+|++|+||||.++++.|+.+++.+||+|+.++++ ++++.+.+++++++. +++|++++.||.+ .+||+|+++||++|
T Consensus 126 ~G~~~~v~vp~~~~~~k~~~~~~~GA~v~~v~~~--~~~~~~~a~~l~~~~-~~~~~~~~~np~~-~eG~~t~~~Ei~eq 201 (347)
T PRK08329 126 EGIKVHVFVSYNASKEKISLLSRLGAELHFVEGD--RMEVHEEAVKFSKRN-NIPYVSHWLNPYF-LEGTKTIAYEIYEQ 201 (347)
T ss_pred cCCcEEEEECCCChHHHHHHHHHcCCEEEEECCC--HHHHHHHHHHHHHhc-CCeeccCCCCchh-hccchhHHHHHHHH
Confidence 9999999999999999999999999999999986 567788888888875 7788999999998 68999999999999
Q ss_pred hCCCCCEEEEccCcchHHHHHHHHHHhcC
Q 028618 172 SGGRIDALVSGIGTGGTITGAGKFLKEKN 200 (206)
Q Consensus 172 ~~~~~d~vv~~vG~Gg~~aGi~~~~k~~~ 200 (206)
++ .||+||+|+|+||+++|++++|+++.
T Consensus 202 l~-~pD~vvvpvG~Gg~l~Gi~~g~kel~ 229 (347)
T PRK08329 202 IG-VPDYAFVPVGSGTLFLGIWKGFKELH 229 (347)
T ss_pred cC-CCCEEEEeCCcHHHHHHHHHHHHHHH
Confidence 95 79999999999999999999999974
No 58
>TIGR01747 diampropi_NH3ly diaminopropionate ammonia-lyase family. This small subfamily includes diaminopropionate ammonia-lyase from Salmonella typhimurium and a small number of close homologs, about 50 % identical in sequence. The enzyme is a pyridoxal phosphate-binding homodimer homologous to threonine dehydratase (threonine deaminase).
Probab=100.00 E-value=6.2e-42 Score=295.01 Aligned_cols=194 Identities=22% Similarity=0.215 Sum_probs=164.8
Q ss_pred hhhhhhccccCCcceecccccCCCC-ceEEEEeCCCCC-CCChhhHHHHHHHHHHHHc----------------CCCC--
Q 028618 8 IAKDVTELIGNTPLVYLNNIVNGCV-ARIAAKLEMMEP-CSSVKDRIGYSMISDAEAK----------------GLIT-- 67 (206)
Q Consensus 8 ~~~~i~~~~~~TPl~~~~~l~~~~g-~~i~~K~E~~~p-tGS~K~R~a~~~~~~a~~~----------------g~~~-- 67 (206)
.+.++..+ .+|||++++.|++.+| .+||+|+|++|+ +||||+||+.+.+..+.++ +.+.
T Consensus 13 ~~~~~~~~-~~TPL~~~~~l~~~~g~~~v~~K~E~~~~~tgSFK~RG~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (376)
T TIGR01747 13 FHKKIPGY-RPTPLCALDHLANLLGLKKILVKDESKRFGLNAFKMLGGSYAIAQYLAEKLHLDIETLSFEHLKNDAIGEK 91 (376)
T ss_pred HHHhCCCC-CCCCCcchHHHHHHhCCCcEEEeeCCCCCCCCChHHHHHHHHHHHHHHHHhCCCcccCCHHHHhhhHHHhh
Confidence 44555444 9999999999999999 499999999985 8999999999999887543 1111
Q ss_pred CCCeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEE
Q 028618 68 PGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYM 147 (206)
Q Consensus 68 ~~~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 147 (206)
.+..+||++|+||||+|+|++|+.+|++|+||||+++++.|+.+++.+||+|+.++.+ ++++.+.+++++++. ++++
T Consensus 92 ~~~~~vv~aSsGN~g~a~A~~Aa~~G~~~~I~vP~~~~~~k~~~i~~~GAeVi~v~~~--~~~a~~~a~~~~~~~-g~~~ 168 (376)
T TIGR01747 92 MGQATFATATDGNHGRGVAWAAQQLGQKAVVYMPKGSAQERVENILNLGAECTITDMN--YDDTVRLAMQMAQQH-GWVV 168 (376)
T ss_pred cCCCEEEEECccHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHhCCCEEEEECCC--HHHHHHHHHHHHHhc-CcEE
Confidence 1236899999999999999999999999999999999999999999999999999986 788999999988876 6888
Q ss_pred cC-----CCCC--CccHHHHHHhHHHHHHhhhCC----CCCEEEEccCcchHHHHHHHHHHhcCC-C-CeEC
Q 028618 148 LQ-----QFEN--PANPKIHYETTGPELWKGSGG----RIDALVSGIGTGGTITGAGKFLKEKNP-N-IKVR 206 (206)
Q Consensus 148 ~~-----~~~~--~~~~~~g~~t~~~Ei~~q~~~----~~d~vv~~vG~Gg~~aGi~~~~k~~~p-~-~~vi 206 (206)
++ +|+| |.. +.||+|+++||++|++. .||+||+|+|+||+++|++.++++..+ + .+||
T Consensus 169 ~~~~~~~~~~~~~~~i-i~G~~Tia~Ei~eQl~~~~~~~pD~vvvpvG~GGl~~Gi~~~~~~~~~~~~p~vi 239 (376)
T TIGR01747 169 VQDTAWEGYEKIPTWI-MQGYATLADEAVEQLREMGSVTPTHVLLQAGVGSMAGGVLGYFVDVYSENNPHSI 239 (376)
T ss_pred eccccccccccCCchH-HHHHHHHHHHHHHHhhccCCCCCCEEEECCchhHHHHHHHHHHHHhcCCCCCEEE
Confidence 76 4666 433 68999999999999962 699999999999999999999987754 3 3664
No 59
>KOG1481 consensus Cysteine synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.3e-42 Score=279.67 Aligned_cols=198 Identities=44% Similarity=0.668 Sum_probs=176.6
Q ss_pred chhhhhhccccCCcceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCCchHHHHH
Q 028618 7 NIAKDVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLA 86 (206)
Q Consensus 7 ~~~~~i~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~aSsGN~g~alA 86 (206)
.+.+-+...||+|||+++..|++..||+|+.|.|.+||.||.|||.|.+++..|++.|++.+| -.|++.|+||+|.++|
T Consensus 38 ~~~~Gv~~~IGnTpliri~sLs~aTGcnIlaK~Ef~NPggS~KDRvAl~iir~Aee~GkL~~g-g~v~EGtaGsTgIslA 116 (391)
T KOG1481|consen 38 GIVSGVEGAIGNTPLIRINSLSNATGCNILAKAEFLNPGGSVKDRVALYIIRTAEEKGKLVRG-GTVVEGTAGSTGISLA 116 (391)
T ss_pred CccchhHHhhCCCceEEeeccccccccchhhhhhccCCCCChhhhhHHHHHHHHHHcCCcccC-ceEEecCCCccchhHH
Confidence 344567889999999999999999999999999999999999999999999999999999998 5799999999999999
Q ss_pred HHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCC--ChHHHHHHHHHHHHhCCC------eEEcCCCCCCccHH
Q 028618 87 FMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAK--GMKGAVQKAEEILAKTPN------AYMLQQFENPANPK 158 (206)
Q Consensus 87 ~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~--~~~~~~~~a~~~~~~~~~------~~~~~~~~~~~~~~ 158 (206)
..|..+|++|+|+||.+.+.+|.+.++.+||+|..|++.. +-+.-+..|++.+.+.++ .+|.+||+|+.||.
T Consensus 117 ~v~~a~Gyk~~I~mPddqs~eK~~ile~LGA~V~rV~pa~i~dp~~yvn~Arr~an~~~~~~ngi~g~fAdQFeN~AN~~ 196 (391)
T KOG1481|consen 117 HVARALGYKCHIYMPDDQSQEKSDILEFLGAEVHRVPPAPIVDPNHYVNQARRAANETPNASNGIRGWFADQFENVANWL 196 (391)
T ss_pred HhhhhcCcceEEECCChHHHHHHHHHHHhcceeeecCCcCccChhHHHHHHHHHhhhcccccCCcccchhhhhcCHHHHH
Confidence 9999999999999999999999999999999999997653 123445555555544332 25679999999999
Q ss_pred HHHHhHHHHHHhhhCCCCCEEEEccCcchHHHHHHHHHHhcCCC-CeE
Q 028618 159 IHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPN-IKV 205 (206)
Q Consensus 159 ~g~~t~~~Ei~~q~~~~~d~vv~~vG~Gg~~aGi~~~~k~~~p~-~~v 205 (206)
.||.++|+|||.|..+.+|++++.+|||||++|+.+++|+.++. +++
T Consensus 197 aHyetTGPEIw~QtkGniDaFia~~GTGGTiaGVskyLkek~~~~v~~ 244 (391)
T KOG1481|consen 197 AHYETTGPEIWHQTKGNIDAFIAGTGTGGTIAGVSKYLKEKSDGRVAV 244 (391)
T ss_pred HHhcCcCcHHHHhhcCCcceEEeccCCCcchHHHHHHHhhcCCCceEE
Confidence 99999999999999999999999999999999999999998875 544
No 60
>TIGR00260 thrC threonine synthase. Involved in threonine biosynthesis it catalyses the reaction O-PHOSPHO-L-HOMOSERINE + H(2)O = L-THREONINE + ORTHOPHOSPHATE using pyridoxal phosphate as a cofactor. the enzyme is distantly related to the serine/threonine dehydratases which are also pyridoxal-phosphate dependent enzymes. the pyridoxal-phosphate binding site is a Lys (K) residues present at residue 70 of the model.
Probab=100.00 E-value=4.8e-42 Score=291.82 Aligned_cols=179 Identities=24% Similarity=0.209 Sum_probs=161.8
Q ss_pred hhhccccCCcceecccccCCCCc-eEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCCchHHHHHHHH
Q 028618 11 DVTELIGNTPLVYLNNIVNGCVA-RIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMA 89 (206)
Q Consensus 11 ~i~~~~~~TPl~~~~~l~~~~g~-~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~aSsGN~g~alA~~a 89 (206)
.+...+++|||+++++++...|. +||+|+|++|||||||||++.+++..+.++|. .+||++|+||||.|+|++|
T Consensus 16 ~~~l~~g~TPl~~~~~l~~~~g~~~i~~K~E~~nptGSfKdR~a~~~l~~a~~~g~-----~~vv~aSsGN~g~a~A~~a 90 (328)
T TIGR00260 16 LVDLGEGVTPLFRSPALVANVGIKNLYVLELFHNPTLSFKDRGMAVALTKALELGN-----DTVLCASTGNTGAAAAAYA 90 (328)
T ss_pred hhhhccCCccCccchHHHHhcCCccEEehhhccCCchhhHhhhHHHHHHHHHHcCC-----CEEEEeCCcHHHHHHHHHh
Confidence 35667799999999999888887 99999999999999999999999999998885 5899999999999999999
Q ss_pred HHCCCcEEEEeCCC-CCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEcCCCCC--CccHHHHHHhHHH
Q 028618 90 AAKQYRLIITMPAS-MSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFEN--PANPKIHYETTGP 166 (206)
Q Consensus 90 ~~~g~~~~ivvp~~-~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~~~~g~~t~~~ 166 (206)
+.+|++|++|+|+. +++.|++.++.+||+|+.++.+ ++++.+.+++++++. +.+++++ .| |.+ ..||.|+++
T Consensus 91 ~~~g~~~~v~~p~~~~s~~k~~~~~~~GA~Vi~~~~~--~~~~~~~~~~~~~~~-~~~~~~~-~n~~~~~-~~g~~t~~~ 165 (328)
T TIGR00260 91 GKAGVKVVILYPAGKISLGKLAQALGYNAEVVAIDGN--FDDAQRLVKQLFGDK-EALGLNS-VNSIPYR-LEGQKTYAF 165 (328)
T ss_pred ccCCCcEEEEECCCCCCHHHHHHHHhcCcEEEEecCC--HHHHHHHHHHHHhhc-Ceeeccc-CCCCCeE-eeeehhHHH
Confidence 99999999999998 8999999999999999999986 789999999998876 4555554 44 776 579999999
Q ss_pred HHHhhhCC-CCCEEEEccCcchHHHHHHHHHHhc
Q 028618 167 ELWKGSGG-RIDALVSGIGTGGTITGAGKFLKEK 199 (206)
Q Consensus 167 Ei~~q~~~-~~d~vv~~vG~Gg~~aGi~~~~k~~ 199 (206)
||++|+++ .||+||+|+|+||+++|++.+|+++
T Consensus 166 Ei~~q~~~~~~d~iv~~vG~GG~~~G~~~~~~~~ 199 (328)
T TIGR00260 166 EAVEQLGWEAPDKVVVPVPNSGNFGAILKGFKEK 199 (328)
T ss_pred HHHHHhCCCCCCEEEEECCCcchHHHHHHHHHHH
Confidence 99999975 7999999999999999999999984
No 61
>TIGR01275 ACC_deam_rel pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family. This model represents a family of pyridoxal phosphate-dependent enzymes closely related to (and often designated as putative examples of) 1-aminocyclopropane-1-carboxylate deaminase. It appears that members of this family include both D-cysteine desulfhydrase (EC 4.4.1.15) and 1-aminocyclopropane-1-carboxylate deaminase (EC 3.5.99.7).
Probab=100.00 E-value=1.8e-41 Score=286.33 Aligned_cols=185 Identities=21% Similarity=0.184 Sum_probs=156.1
Q ss_pred cccCCcceecccccCCCCceEEEEeCCCCCC--CChhhHHHHHHHHHHHHcCCCCCCCeEEEee--CCCchHHHHHHHHH
Q 028618 15 LIGNTPLVYLNNIVNGCVARIAAKLEMMEPC--SSVKDRIGYSMISDAEAKGLITPGESVLIEP--TSGNTGIGLAFMAA 90 (206)
Q Consensus 15 ~~~~TPl~~~~~l~~~~g~~i~~K~E~~~pt--GS~K~R~a~~~~~~a~~~g~~~~~~~~vv~a--SsGN~g~alA~~a~ 90 (206)
...+|||++++.++...|.+||+|+|++||+ ||||+|++.+++..++++|. +.||++ |+||||+|+|++|+
T Consensus 4 ~~~~TPl~~~~~l~~~~g~~l~~K~E~l~p~~~gs~K~R~~~~~l~~a~~~g~-----~~vv~~g~ssGN~g~alA~~a~ 78 (311)
T TIGR01275 4 IPWPTPIQYLPRISREIGAEIYIKRDDLTGLGIGGNKIRKLEYLLADALSKGA-----DTVITVGAIQSNHARATALAAK 78 (311)
T ss_pred CCCCCcceechhhhhhcCCeEEEEeccCcCCCCCchhHHHHHHHHHHHHHcCC-----CEEEEcCCchhHHHHHHHHHHH
Confidence 3478999999999888889999999999998 99999999999999999986 578887 66999999999999
Q ss_pred HCCCcEEEEeCCCC-CHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHH----hCC-CeEEcCCCCCCccHHHHHHhH
Q 028618 91 AKQYRLIITMPASM-SLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILA----KTP-NAYMLQQFENPANPKIHYETT 164 (206)
Q Consensus 91 ~~g~~~~ivvp~~~-~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~----~~~-~~~~~~~~~~~~~~~~g~~t~ 164 (206)
.+|+++++|||+.. +..+..+++.+||+|+.++... +.+..+.+.++++ +.+ .+++++++.|+.+ ..|+.++
T Consensus 79 ~~G~~~~ivvp~~~~~~~~~~~~~~~Ga~v~~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~~g~~~~ 156 (311)
T TIGR01275 79 KLGLDAVLVLREKEELNGNLLLDKLMGAETRVYSAEE-YFEIMKYAEELAEELEKEGRKPYVIPVGGSNSLG-TLGYVEA 156 (311)
T ss_pred HhCCceEEEecCCccCCCCHHHHHHcCCEEEEECchh-hhhhHHHHHHHHHHHHhcCCCeEEECCCCCcHHH-HHHHHHH
Confidence 99999999999975 4556777899999999998632 3344444444433 322 2445688888887 4677789
Q ss_pred HHHHHhhhCC--CCCEEEEccCcchHHHHHHHHHHhcCCCCeEC
Q 028618 165 GPELWKGSGG--RIDALVSGIGTGGTITGAGKFLKEKNPNIKVR 206 (206)
Q Consensus 165 ~~Ei~~q~~~--~~d~vv~~vG~Gg~~aGi~~~~k~~~p~~~vi 206 (206)
+.||++|++. .||+||+|+|||||++|++.+||+.+|+++||
T Consensus 157 ~~EI~~q~~~~~~~D~vv~~vGtGgt~~Gi~~~lk~~~~~~~vi 200 (311)
T TIGR01275 157 VLEIATQLESEVKFDSIVVAAGSGGTIAGLSLGLSILNEDIRPV 200 (311)
T ss_pred HHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCcEE
Confidence 9999999963 69999999999999999999999999999975
No 62
>TIGR03528 2_3_DAP_am_ly diaminopropionate ammonia-lyase. Members of this protein family are the homodimeric, pyridoxal phosphate enzyme diaminopropionate ammonia-lyase, which adds water to remove two amino groups, leaving pyruvate.
Probab=100.00 E-value=2.5e-41 Score=292.96 Aligned_cols=190 Identities=22% Similarity=0.172 Sum_probs=159.9
Q ss_pred ccccCCcceecccccCCCC-ceEEEEeCCCCC-CCChhhHHHHHHHHHHH--HcCCC--------------C--CCCeEE
Q 028618 14 ELIGNTPLVYLNNIVNGCV-ARIAAKLEMMEP-CSSVKDRIGYSMISDAE--AKGLI--------------T--PGESVL 73 (206)
Q Consensus 14 ~~~~~TPl~~~~~l~~~~g-~~i~~K~E~~~p-tGS~K~R~a~~~~~~a~--~~g~~--------------~--~~~~~v 73 (206)
..+.+|||++++.|++.+| .+||+|+|++|+ |||||+||+.+.+..+. +.|.. . ....+|
T Consensus 37 ~~~~~TPL~~~~~L~~~~g~~~v~lK~E~~q~~tGSFK~RGa~~~v~~l~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~v 116 (396)
T TIGR03528 37 PGYQPTPLAELDNLAKHLGVGSILVKDESYRFGLNAFKVLGGSYAIGKYLAEKLGKDISELSFEKLKSNEIREKLGDITF 116 (396)
T ss_pred CCCcCCCCcchHHHHHHhCCCcEEEeeCCCCCCcCChHHHHHHHHHHHHHHHHhCCCcccccHHHhhhHHHHhhccCcEE
Confidence 3568999999999999899 599999999985 99999999999998753 22210 0 011379
Q ss_pred EeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEcC----
Q 028618 74 IEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQ---- 149 (206)
Q Consensus 74 v~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~---- 149 (206)
|++|+||||+|+|++|+.+|++|+||||+++++.|++.++.+||+|+.++.+ ++++.+.+++++++. +++|++
T Consensus 117 v~aSsGN~g~alA~~aa~~Gi~~~IvvP~~~~~~K~~~ir~~GAeVi~~~~~--~~~a~~~a~~~a~~~-g~~~v~~~~~ 193 (396)
T TIGR03528 117 VTATDGNHGRGVAWAANQLGQKSVVYMPKGSAQIRLENIRAEGAECTITDLN--YDDAVRLAWKMAQEN-GWVMVQDTAW 193 (396)
T ss_pred EEECccHHHHHHHHHHHHcCCCEEEEEeCCCcHHHHHHHHhcCCEEEEECCC--HHHHHHHHHHHHHhc-CcEeeccccc
Confidence 9999999999999999999999999999999999999999999999999976 788999999998886 788875
Q ss_pred -CCCCCc-cHHHHHHhHHHHHHhhhC----CCCCEEEEccCcchHHHHHHHHHHhc-CCCC-eEC
Q 028618 150 -QFENPA-NPKIHYETTGPELWKGSG----GRIDALVSGIGTGGTITGAGKFLKEK-NPNI-KVR 206 (206)
Q Consensus 150 -~~~~~~-~~~~g~~t~~~Ei~~q~~----~~~d~vv~~vG~Gg~~aGi~~~~k~~-~p~~-~vi 206 (206)
+|+|.. ..+.||+|++.||++|++ +.||+||+|+|+||+++|++.++++. .+++ +||
T Consensus 194 ~~~~~~~~~~i~G~~Tig~EI~eQl~~~~~~~pD~vvvpvG~Ggl~~gi~~~~~~~~~~~~p~vi 258 (396)
T TIGR03528 194 EGYEKIPTWIMQGYGTLALEALEQLKEQGVEKPTHVFLQAGVGSFAGAVQGYFASAYGEERPITV 258 (396)
T ss_pred cccccCchHHHHHHhHHHHHHHHHHhhcCCCCCCEEEEcCCcchHHHHHHHHHHHhcCCCCCEEE
Confidence 676632 235799999999999996 26999999999999999999999654 3443 553
No 63
>PRK03910 D-cysteine desulfhydrase; Validated
Probab=100.00 E-value=1.2e-40 Score=283.68 Aligned_cols=192 Identities=22% Similarity=0.210 Sum_probs=163.0
Q ss_pred hhhhhccccCCcceecccccCCCCceEEEEeCCCCCC--CChhhHHHHHHHHHHHHcCCCCCCCeEEEeeC--CCchHHH
Q 028618 9 AKDVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPC--SSVKDRIGYSMISDAEAKGLITPGESVLIEPT--SGNTGIG 84 (206)
Q Consensus 9 ~~~i~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~pt--GS~K~R~a~~~~~~a~~~g~~~~~~~~vv~aS--sGN~g~a 84 (206)
+.++...+++|||++++.+++..|.+||+|+|++||+ ||||+|++.+++..+.++|. ++||+++ +||||.|
T Consensus 6 ~~~~~~~~~~TPl~~~~~l~~~~g~~i~~K~E~lnp~g~gs~K~R~~~~~l~~a~~~g~-----~~vvt~g~s~gN~g~a 80 (331)
T PRK03910 6 FPRLELAGLPTPLEPLPRLSAALGPDIYIKRDDLTGLALGGNKTRKLEFLLADALAQGA-----DTLITAGAIQSNHARQ 80 (331)
T ss_pred CCCccccCCCCCceEhhhhhHhhCCcEEEEeccCCCCCCCchHHHHHHHHHHHHHHcCC-----CEEEEcCcchhHHHHH
Confidence 4557789999999999999887889999999999997 59999999999999998886 5678764 4899999
Q ss_pred HHHHHHHCCCcEEEEeCCCCCH--------HHHHHHHHcCCEEEEeCCCCChH-HHHHHHHHHHHhCCCeE-EcCCCCCC
Q 028618 85 LAFMAAAKQYRLIITMPASMSL--------ERRIILRAFGAELVLTDPAKGMK-GAVQKAEEILAKTPNAY-MLQQFENP 154 (206)
Q Consensus 85 lA~~a~~~g~~~~ivvp~~~~~--------~~~~~~~~~Ga~v~~~~~~~~~~-~~~~~a~~~~~~~~~~~-~~~~~~~~ 154 (206)
+|++|+.+|++|++|||++.++ .++..++.+||+|+.++.+.+.. .+...++++.++.+..+ +.+++.|+
T Consensus 81 lA~~a~~~G~~~~i~vp~~~~~~~~~~~~~~~~~~~~~~Ga~vi~~~~~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~ 160 (331)
T PRK03910 81 TAAAAAKLGLKCVLLLENPVPTEAENYLANGNVLLDDLFGAEIHVVPAGTDMDAQLEELAEELRAQGRRPYVIPVGGSNA 160 (331)
T ss_pred HHHHHHHhCCcEEEEEcCCCCcccccccCCCcHHHHHHcCCEEEEeCccchHHHHHHHHHHHHHHcCCceEEECCCCCCc
Confidence 9999999999999999998775 45589999999999998753222 34455666666643334 45678888
Q ss_pred ccHHHHHHhHHHHHHhhhCC---CCCEEEEccCcchHHHHHHHHHHhcCCCCeEC
Q 028618 155 ANPKIHYETTGPELWKGSGG---RIDALVSGIGTGGTITGAGKFLKEKNPNIKVR 206 (206)
Q Consensus 155 ~~~~~g~~t~~~Ei~~q~~~---~~d~vv~~vG~Gg~~aGi~~~~k~~~p~~~vi 206 (206)
.+ ..||.+++.||++|++. .||+||+|+|||||++|++.+|++.+|+++||
T Consensus 161 ~~-~~g~~~~~~Ei~~q~~~~~~~~d~vv~~vGtGgt~~Gi~~~~k~~~~~~~vi 214 (331)
T PRK03910 161 LG-ALGYVACALEIAQQLAEGGVDFDAVVVASGSGGTHAGLAAGLAALGPDIPVI 214 (331)
T ss_pred hh-HHHHHHHHHHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCeEE
Confidence 88 56889999999999963 69999999999999999999999999999986
No 64
>PF00291 PALP: Pyridoxal-phosphate dependent enzyme; InterPro: IPR001926 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. Pyridoxal-5'-phosphate-dependent enzymes (B6 enzymes) catalyze manifold reactions in the metabolism of amino acids. Most of these enzymes can be assigned to one of three different families of homologous proteins, the alpha, beta and gamma families. The alpha and gamma family might be distantly related with one another, but are clearly not homologous with the beta family. The beta family includes L- and D-serine dehydratase, threonine dehydratase, the beta subunit of tryptophan synthase, threonine synthase and cysteine synthase. These enzymes catalyze beta-replacement or beta-elimination reactions []. Comparison of sequences from eukaryotic, archebacterial, and eubacterial species indicates that the functional specialization of most B6 enzymes has occurred already in the universal ancestor cell. The cofactor pyridoxal-5-phosphate must have emerged very early in biological evolution; conceivably, organic cofactors and metal ions were the first biological catalysts []. The 3D structure of the beta-subunit of tryptophan synthase has been solved. The subunit has two domains that are approximately the same size and similar to each other in folding pattern. Each has a core containing a four-stranded parallel beta-sheet with three helices on its inner side and one on the outer side. The cofactor is bound at the interface between the domains [].; GO: 0003824 catalytic activity, 0030170 pyridoxal phosphate binding, 0008152 metabolic process; PDB: 1P5J_A 2D1F_B 3AEY_B 3AEX_B 3IAU_A 2Q3B_A 2Q3D_A 2Q3C_A 1TZJ_A 1RQX_D ....
Probab=100.00 E-value=1.5e-40 Score=279.25 Aligned_cols=183 Identities=36% Similarity=0.489 Sum_probs=156.2
Q ss_pred hhccccCCcceecc--cccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCCchHHHHHHHH
Q 028618 12 VTELIGNTPLVYLN--NIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMA 89 (206)
Q Consensus 12 i~~~~~~TPl~~~~--~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~aSsGN~g~alA~~a 89 (206)
|+..+++|||++++ .++...+.+||+|+|++|||||||+|++.+++.+++++|. ++|+++|+||||.|+|++|
T Consensus 1 i~~~~~~TPl~~~~~~~~~~~~~~~i~~K~E~~~ptgs~K~R~a~~~l~~a~~~~~-----~~vv~assGN~g~a~A~~a 75 (306)
T PF00291_consen 1 ISLGIGPTPLVRLPSRLLSELGGANIYLKREDLNPTGSFKDRGAYYLLSRAKEKGG-----RTVVGASSGNHGRALAYAA 75 (306)
T ss_dssp GGGGSSSS-EEEEHEHHHHHCTTSEEEEEEGGGSTTSBTHHHHHHHHHHHHHHTTT-----SEEEEESSSHHHHHHHHHH
T ss_pred CcCCCcCCCEEECccccchhccCCeEEEEECCCCCcCCcccccchhhhhhcccccc-----ceeeeeccCCceehhhhhh
Confidence 57889999999965 5556667899999999999999999999999999998865 6789999999999999999
Q ss_pred HHCCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHh-------CCCeEEcCCCCCCccHHHHHH
Q 028618 90 AAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAK-------TPNAYMLQQFENPANPKIHYE 162 (206)
Q Consensus 90 ~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~-------~~~~~~~~~~~~~~~~~~g~~ 162 (206)
+.+|++|++|+|+++++.++++++.+|++|+.++.+ ++++.+.+.+++++ .++. ++|+ ++.+...||.
T Consensus 76 ~~~g~~~~i~~p~~~~~~~~~~~~~~Ga~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~g~~ 150 (306)
T PF00291_consen 76 ARLGLKCTIVVPEDVSPEKLKQMRALGAEVILVPGD--VEGAFDDAQELAKERAELLSPFNGE--LNQY-NNPNVIAGYA 150 (306)
T ss_dssp HHHTCEEEEEEETTSHHHHHHHHHHTTCEEEEESST--HHHHHHHHHHHHHHHHHHHHHSTTE--ESTT-TSHHHHHHHH
T ss_pred hhccccceeeeccccccccccceeeecceEEEcccc--ccccccccccccccccccccccccc--cCcc-cchhhhhhhh
Confidence 999999999999999999999999999999999876 44444444444332 2222 6777 5555588999
Q ss_pred hHHHHHHhhhCCCCCE--EEEccCcchHHHHHHHHHHh--cCCCCeEC
Q 028618 163 TTGPELWKGSGGRIDA--LVSGIGTGGTITGAGKFLKE--KNPNIKVR 206 (206)
Q Consensus 163 t~~~Ei~~q~~~~~d~--vv~~vG~Gg~~aGi~~~~k~--~~p~~~vi 206 (206)
+++.||++|+. .||. ||+|+|+||+++|++.+++. . |++|||
T Consensus 151 ~~~~Ei~~q~~-~~d~d~vvv~~GtGg~~~Gi~~~~~~~~~-~~~~vi 196 (306)
T PF00291_consen 151 TIGLEIYEQLG-KPDPDYVVVPVGTGGTAAGIAAGLKELIL-PPVRVI 196 (306)
T ss_dssp HHHHHHHHHHT-TESESEEEEEESSSHHHHHHHHHHHHHCH-TTSEEE
T ss_pred hcchhcccccc-cccceEEEecCCchhHHHHHHhhhhhhhc-ccccce
Confidence 99999999997 6665 99999999999999999999 7 899885
No 65
>TIGR00263 trpB tryptophan synthase, beta subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. the beta chain contains the functional domain for or the synthesis of tryptophan from indole and serine. The enzyme requires pyridoxal-phosphate as a cofactor. The pyridoxal-P attachment site is contained within the conserved region [LIVM]-x-H-x-G-[STA]-H-K-x-N] [K is the pyridoxal-P attachment site] which is present between residues 90-100 of the model.
Probab=100.00 E-value=2.6e-40 Score=286.25 Aligned_cols=190 Identities=18% Similarity=0.209 Sum_probs=154.5
Q ss_pred hhcccc-CCcceecccccCCCC-ceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCCchHHHHHHHH
Q 028618 12 VTELIG-NTPLVYLNNIVNGCV-ARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMA 89 (206)
Q Consensus 12 i~~~~~-~TPl~~~~~l~~~~g-~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~aSsGN~g~alA~~a 89 (206)
+..+++ +|||++++++++.+| .+||+|+|++|||||||+|++..++..+.++|. +..++++|+||||+|+|++|
T Consensus 43 ~~~~~~~~TPL~~~~~l~~~~g~~~iy~K~E~~nptGS~K~R~a~~~~~~a~~~g~----~~vi~e~ssGN~G~alA~~a 118 (385)
T TIGR00263 43 LRNYAGRPTPLTFAPNLTEALGGAKIYLKREDLNHTGAHKINNALGQALLAKRMGK----KRIIAETGAGQHGVATATAA 118 (385)
T ss_pred HHHhCCCCCCceehHHHHHHhCCCeEEEEeCCCCCCccchHHHHHHHHHHHHHcCC----CEEEEEcCcHHHHHHHHHHH
Confidence 344554 899999999998887 799999999999999999999999999988885 24556799999999999999
Q ss_pred HHCCCcEEEEeCCC-CCH--HHHHHHHHcCCEEEEeCCC-CChHHHH-HHHHHHHHhCCCeEEc-CCCCC----CccHHH
Q 028618 90 AAKQYRLIITMPAS-MSL--ERRIILRAFGAELVLTDPA-KGMKGAV-QKAEEILAKTPNAYML-QQFEN----PANPKI 159 (206)
Q Consensus 90 ~~~g~~~~ivvp~~-~~~--~~~~~~~~~Ga~v~~~~~~-~~~~~~~-~~a~~~~~~~~~~~~~-~~~~~----~~~~~~ 159 (206)
+.+|++|+||||+. .+. .++++|+.+||+|+.++.. ..++++. +.+++++++.++.+|+ +++.| +.++..
T Consensus 119 ~~~Gl~~~Iv~p~~~~~~~~~~~~~~~~~GA~Vv~v~~~~~~~~~a~~~~~~~~~~~~~~~~y~~~~~~~~~p~~~~~~~ 198 (385)
T TIGR00263 119 ALLGLDCEVYMGAEDVERQKPNVFRMELLGAKVIPVTSGSGTLKDAVNEALRDWVTSVDDTHYVLGSAVGPHPFPTMVRD 198 (385)
T ss_pred HHcCCCEEEEecCCcccccchHHHHHHHcCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCceEEeCCcCCCCCchHHHHH
Confidence 99999999999985 443 5688999999999999853 3355664 4445556664455665 44443 345568
Q ss_pred HHHhHHHHHHhhhC----CCCCEEEEccCcchHHHHHHHHHHhcCCCCeEC
Q 028618 160 HYETTGPELWKGSG----GRIDALVSGIGTGGTITGAGKFLKEKNPNIKVR 206 (206)
Q Consensus 160 g~~t~~~Ei~~q~~----~~~d~vv~~vG~Gg~~aGi~~~~k~~~p~~~vi 206 (206)
||+|++.||++|+. ..||+||+|+|+||+++|++.++.. .|++|||
T Consensus 199 ~~~t~g~Ei~~Ql~~~~~~~pD~vv~~vG~Gg~~~Gv~~~~~~-~~~~~ii 248 (385)
T TIGR00263 199 FQSVIGEEAKEQILEQEGRLPDAVIACVGGGSNAIGIFYAFID-DPSVQLI 248 (385)
T ss_pred HhhHHHHHHHHHHHhhhCCCCCEEEEEeCchHHHHHHHHHHhh-CCCCeEE
Confidence 99999999999973 2589999999999999999998855 6999886
No 66
>PRK13028 tryptophan synthase subunit beta; Provisional
Probab=100.00 E-value=4.2e-40 Score=284.74 Aligned_cols=190 Identities=21% Similarity=0.169 Sum_probs=157.2
Q ss_pred hhcccc-CCcceecccccCCC-CceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCCchHHHHHHHH
Q 028618 12 VTELIG-NTPLVYLNNIVNGC-VARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMA 89 (206)
Q Consensus 12 i~~~~~-~TPl~~~~~l~~~~-g~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~aSsGN~g~alA~~a 89 (206)
..++++ +|||++++++++.+ +.+||+|+|++|||||||+|.+..++..+++.|+ +..|+++|+||||+|+|++|
T Consensus 55 ~~~~~g~pTPL~~~~~Ls~~~Gg~~IylK~EdlnptGS~K~r~al~~~l~A~~~G~----~~vI~etgsGnhG~A~A~aa 130 (402)
T PRK13028 55 LKHYVGRPTPLYHAKRLSEELGGAQIYLKREDLNHTGAHKINNCLGQALLAKRMGK----KRLIAETGAGQHGVATATAA 130 (402)
T ss_pred HHHhCCCCCCeeehHHhHhhcCCCeEEEEECCCCCCcchHHHHHHHHHHHHHHcCC----CeEEEecCcHHHHHHHHHHH
Confidence 456676 79999999999988 5799999999999999999999999999999886 24566789999999999999
Q ss_pred HHCCCcEEEEeCCCCCH---HHHHHHHHcCCEEEEeCC-CCChHHHHHHHHH-HHHhCCCeEEcCC-C----CCCccHHH
Q 028618 90 AAKQYRLIITMPASMSL---ERRIILRAFGAELVLTDP-AKGMKGAVQKAEE-ILAKTPNAYMLQQ-F----ENPANPKI 159 (206)
Q Consensus 90 ~~~g~~~~ivvp~~~~~---~~~~~~~~~Ga~v~~~~~-~~~~~~~~~~a~~-~~~~~~~~~~~~~-~----~~~~~~~~ 159 (206)
+.+|++|+||||+..++ .++.+|+.+||+|+.++. ...++++.+.+.+ ++++.++.+|+.+ . ..|.++..
T Consensus 131 a~~Gl~~~I~m~~~d~~~q~~nv~~mr~~GAeVi~v~~g~~~~~~a~~~a~~~~~~~~~~~~y~~~s~~gp~p~p~~v~~ 210 (402)
T PRK13028 131 ALFGLECEIYMGEVDIERQHPNVFRMKLLGAEVVPVTRGGRTLKEAVDSAFEDYLKDPDNTHYAIGSVVGPHPFPMMVRD 210 (402)
T ss_pred HHcCCCEEEEECCCcchhhHHHHHHHHHcCCEEEEEcCCCCCHHHHHHHHHHHHHHhcCCcEEEecCcCCCCCcHHHHHH
Confidence 99999999999986443 567899999999999985 2347788887754 5665445666532 1 12344456
Q ss_pred HHHhHHHHHHhhhC----CCCCEEEEccCcchHHHHHHHHHHhcCCCCeEC
Q 028618 160 HYETTGPELWKGSG----GRIDALVSGIGTGGTITGAGKFLKEKNPNIKVR 206 (206)
Q Consensus 160 g~~t~~~Ei~~q~~----~~~d~vv~~vG~Gg~~aGi~~~~k~~~p~~~vi 206 (206)
|+++++.||.+|+. ..||+||+|+|+||+++|++.+|++ .|++|||
T Consensus 211 ~q~tig~Ei~~Q~~~~~g~~pD~vV~~VGgGg~~~Gi~~~f~~-~~~v~ii 260 (402)
T PRK13028 211 FQSVIGEEAREQFLEMTGRLPDAVVACVGGGSNAIGLFSAFLD-DESVRLV 260 (402)
T ss_pred HhHHHHHHHHHHHHHhhCCCCCEEEEEcCchHHHHHHHHHHHh-CCCceEE
Confidence 99999999999973 3699999999999999999999986 4889886
No 67
>PRK04346 tryptophan synthase subunit beta; Validated
Probab=100.00 E-value=3.8e-40 Score=284.60 Aligned_cols=190 Identities=20% Similarity=0.221 Sum_probs=155.2
Q ss_pred hhcccc-CCcceecccccCCC-CceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCCchHHHHHHHH
Q 028618 12 VTELIG-NTPLVYLNNIVNGC-VARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMA 89 (206)
Q Consensus 12 i~~~~~-~TPl~~~~~l~~~~-g~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~aSsGN~g~alA~~a 89 (206)
+.++++ +|||+++++|++.+ |.+||+|+|++|||||||+|.+...+..|++.|+ +..|+++|+||||+|+|++|
T Consensus 51 ~~~~~grpTPL~~~~~Ls~~~gg~~IylK~EdlnptGS~K~r~al~~~l~A~~~Gk----~~vIaetgaGnhG~A~A~~a 126 (397)
T PRK04346 51 LKNYVGRPTPLYFAERLSEHLGGAKIYLKREDLNHTGAHKINNVLGQALLAKRMGK----KRIIAETGAGQHGVATATAA 126 (397)
T ss_pred HHHhcCCCCCceEhHHHHHHcCCCeEEEEECCCCCccchHHHHHHHHHHHHHHcCC----CeEEEecCcHHHHHHHHHHH
Confidence 456676 59999999999988 5899999999999999999999999999999886 24566689999999999999
Q ss_pred HHCCCcEEEEeCCCC-C--HHHHHHHHHcCCEEEEeCC-CCChHHHHHHHH-HHHHhCCCeEEc-CCCCC----CccHHH
Q 028618 90 AAKQYRLIITMPASM-S--LERRIILRAFGAELVLTDP-AKGMKGAVQKAE-EILAKTPNAYML-QQFEN----PANPKI 159 (206)
Q Consensus 90 ~~~g~~~~ivvp~~~-~--~~~~~~~~~~Ga~v~~~~~-~~~~~~~~~~a~-~~~~~~~~~~~~-~~~~~----~~~~~~ 159 (206)
+++|++|+||||+.. + ..++.+|+.+||+|+.++. ...+.++...+. .+.++.++.+|+ ++..+ |.+...
T Consensus 127 a~~Gl~c~I~mp~~d~~rq~~nv~~m~~lGA~Vv~v~~g~~~l~da~~ea~~~~~~~~~~~~y~~gs~~gphp~p~~v~~ 206 (397)
T PRK04346 127 ALLGLECVIYMGAEDVERQALNVFRMKLLGAEVVPVTSGSRTLKDAVNEALRDWVTNVEDTHYLIGSVAGPHPYPTMVRD 206 (397)
T ss_pred HHcCCcEEEEecCCchhhhhhHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEeCCcCCCCCchHHHHH
Confidence 999999999999863 3 3567889999999999985 333666655554 466664455554 33222 344456
Q ss_pred HHHhHHHHHHhhhC----CCCCEEEEccCcchHHHHHHHHHHhcCCCCeEC
Q 028618 160 HYETTGPELWKGSG----GRIDALVSGIGTGGTITGAGKFLKEKNPNIKVR 206 (206)
Q Consensus 160 g~~t~~~Ei~~q~~----~~~d~vv~~vG~Gg~~aGi~~~~k~~~p~~~vi 206 (206)
||++++.||++|+. ..||+||+|+|+||+++|++.+|++ .|++|||
T Consensus 207 ~q~tig~Ei~eQ~~~~~g~~pD~vVa~VGgGg~~~Gi~~~f~~-~~~v~ii 256 (397)
T PRK04346 207 FQSVIGEEAKAQILEKEGRLPDAVVACVGGGSNAIGIFHPFID-DESVRLI 256 (397)
T ss_pred hcchHHHHHHHHHHHhhCCCCCEEEEecCccHhHHHHHHHHhh-CCCCeEE
Confidence 99999999999973 3699999999999999999999976 7899986
No 68
>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional
Probab=100.00 E-value=8.8e-40 Score=297.06 Aligned_cols=190 Identities=19% Similarity=0.216 Sum_probs=161.2
Q ss_pred hhcccc-CCcceecccccCC----CC--ceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCCchHHH
Q 028618 12 VTELIG-NTPLVYLNNIVNG----CV--ARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIG 84 (206)
Q Consensus 12 i~~~~~-~TPl~~~~~l~~~----~g--~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~aSsGN~g~a 84 (206)
...++| +|||+++++|++. +| .+||+|+|++|||||||+|++.+++..+++.|+. +.|+++|+||||+|
T Consensus 319 ~~~~iGrpTPL~~~~~Ls~~l~~~~G~g~~IylK~E~lNpTGS~KdR~Al~~i~~A~~~G~~----~~IvetssGNhG~A 394 (695)
T PRK13802 319 NQRYVGRPSPLTEAPRFAERVKEKTGLDARVFLKREDLNHTGAHKINNALGQALLVKRMGKT----RVIAETGAGQHGVA 394 (695)
T ss_pred HHhcCCCCCceeEchhhhhhhHhhcCCCceEEEEEccCCCcCCcHHHHHHHHHHHHHHcCCC----CEEEEECcHHHHHH
Confidence 456788 9999999998753 44 7999999999999999999999999999999972 57889999999999
Q ss_pred HHHHHHHCCCcEEEEeCCCC---CHHHHHHHHHcCCEEEEeCC-CCChHHHHHHH-HHHHHhCC-CeEEcCCCCCC----
Q 028618 85 LAFMAAAKQYRLIITMPASM---SLERRIILRAFGAELVLTDP-AKGMKGAVQKA-EEILAKTP-NAYMLQQFENP---- 154 (206)
Q Consensus 85 lA~~a~~~g~~~~ivvp~~~---~~~~~~~~~~~Ga~v~~~~~-~~~~~~~~~~a-~~~~~~~~-~~~~~~~~~~~---- 154 (206)
+|++|+++|++|+||||+.. +..|+.+|+.+||+|+.++. +..+.++.+.+ ++++++.+ .+|+++++.|+
T Consensus 395 lA~aaA~~Gl~c~Ivmp~~~~~~~~~nv~~mr~lGAeVi~v~~g~~~l~~Ai~ea~~~~~~~~~~~~y~i~~~~g~~P~p 474 (695)
T PRK13802 395 TATVCAMLGLKCRIYMGQIDARRQALNVARMRMLGAEVVEVTLGDRILKDAINEALRDWVTNVKDTHYLLGTVAGPHPFP 474 (695)
T ss_pred HHHHHHHcCCCEEEEEeCCcccccHHHHHHHHHcCCEEEEECCCCCcHHHHHHHHHHHHHHhcCCceEeecccCCCCCcH
Confidence 99999999999999999963 67899999999999999984 32466776555 55776543 44678888664
Q ss_pred ccHHHHHHhHHHHHHhhhCC-----CCCEEEEccCcchHHHHHHHHHHhcCCCCeEC
Q 028618 155 ANPKIHYETTGPELWKGSGG-----RIDALVSGIGTGGTITGAGKFLKEKNPNIKVR 206 (206)
Q Consensus 155 ~~~~~g~~t~~~Ei~~q~~~-----~~d~vv~~vG~Gg~~aGi~~~~k~~~p~~~vi 206 (206)
.++..||.++|.||++|+.. .||+||+|+|+||+++|++.+|++ .|++|||
T Consensus 475 ~~v~agq~tiG~EI~eQ~~~~~g~~~pD~VVa~VGgGg~~~Gi~~~f~~-~~~vkli 530 (695)
T PRK13802 475 AMVRDFQKIIGEEAKQQLQDWYGIDHPDAICACVGGGSNAIGVMNAFLD-DERVNLY 530 (695)
T ss_pred HHHHHHHHHHHHHHHHHHhcccCCCCCCEEEEcCCchHHHHHHHHHHHh-CCCceEE
Confidence 34568999999999999952 699999999999999999999976 6888885
No 69
>PRK14045 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=100.00 E-value=3.5e-40 Score=280.48 Aligned_cols=195 Identities=22% Similarity=0.241 Sum_probs=162.3
Q ss_pred cchhhhhhccccCCcceecccccCCCCceEEEEeCCCCCC--CChhhHHHHHHHHHHHHcCCCCCCCeEEE--eeCCCch
Q 028618 6 SNIAKDVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPC--SSVKDRIGYSMISDAEAKGLITPGESVLI--EPTSGNT 81 (206)
Q Consensus 6 ~~~~~~i~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~pt--GS~K~R~a~~~~~~a~~~g~~~~~~~~vv--~aSsGN~ 81 (206)
+..++++....++|||++++++++..|++||+|+|++||+ ||||+|++.+++.++.++|. ++|+ ++|+|||
T Consensus 9 ~~~~~~~~l~~~~TPl~~~~~l~~~~g~~v~~K~E~l~~~~~gg~K~R~~~~~l~~a~~~G~-----~~vv~~~~ssGN~ 83 (329)
T PRK14045 9 LSKFPRVELIPWETPIQYLPNISRELGADVYVKRDDLTGLGIGGNKIRKLEYLLGDALSRGA-----DVVITVGAVHSNH 83 (329)
T ss_pred hhcCCCcccCCCCCCcccchhhHHHhCCeEEEEcccccCCCCCcchHHHHHhHHHHHHHcCC-----CEEEEeCccHHHH
Confidence 4456788889999999999999887889999999999997 89999999999999999987 4565 6899999
Q ss_pred HHHHHHHHHHCCCcEEEEeCCCCCHH-HHHHHHHcCCEEEEeCCCCC---hHHHHHHHHHHHHhCCCeEE-cCCCCCCcc
Q 028618 82 GIGLAFMAAAKQYRLIITMPASMSLE-RRIILRAFGAELVLTDPAKG---MKGAVQKAEEILAKTPNAYM-LQQFENPAN 156 (206)
Q Consensus 82 g~alA~~a~~~g~~~~ivvp~~~~~~-~~~~~~~~Ga~v~~~~~~~~---~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ 156 (206)
|+|+|++|+.+|++|++|||...+.. +...++.+||+++.++.... .+.+.+.+++++++.+..+| .+++.|+.+
T Consensus 84 g~alA~~a~~~G~~~~ivvp~~~~~~~~~~l~~~~Ga~v~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~~~~n~~~ 163 (329)
T PRK14045 84 AFVTGLAAKKLGLDAVLVLRGKEELKGNYLLDKIMGIETRVYEAKDSFELMKYAEEVAEELKGEGRKPYIIPPGGASPVG 163 (329)
T ss_pred HHHHHHHHHHcCCeEEEEEeCCCCCCcCHHHHHHCCCEEEEECCCcccchHHHHHHHHHHHHhcCCCEEEECCCCCchhH
Confidence 99999999999999999999875443 55677999999998874321 23556666676666545565 566778888
Q ss_pred HHHHHHhHHHHHHhhhC---CCCCEEEEccCcchHHHHHHHHHHhcCCCCeEC
Q 028618 157 PKIHYETTGPELWKGSG---GRIDALVSGIGTGGTITGAGKFLKEKNPNIKVR 206 (206)
Q Consensus 157 ~~~g~~t~~~Ei~~q~~---~~~d~vv~~vG~Gg~~aGi~~~~k~~~p~~~vi 206 (206)
+ .|+.+.+.||++|++ ..+|+||+|+|||||++|++.++|+.+|++|||
T Consensus 164 ~-~g~~~~~~EI~~q~~~~~~~~d~vv~~vGtGGt~aGi~~~lk~~~~~~kVi 215 (329)
T PRK14045 164 T-LGYVRAVGEIATQVKKLGVRFDSIVVAVGSGGTLAGLSLGLAILNAEWRVV 215 (329)
T ss_pred H-HHHHHHHHHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCeEE
Confidence 5 466555569999996 369999999999999999999999999999996
No 70
>TIGR01415 trpB_rel pyridoxal-phosphate dependent TrpB-like enzyme. This model represents a family of pyridoxal-phosphate dependent enzyme (pfam00291) closely related to the beta subunit of tryptophan synthase (TIGR00263). However, the only case in which a member of this family replaces a member of TIGR00263 is in Sulfolobus species which contain two sequences which hit this model, one of which is proximal to the alpha subunit. In every other case so far, either the species appears not to make tryptophan (there is no trp synthase alpha subunit), or a trp synthase beta subunit matching TIGR00263 is also found.
Probab=100.00 E-value=1.4e-39 Score=283.36 Aligned_cols=185 Identities=21% Similarity=0.213 Sum_probs=153.2
Q ss_pred hccc-cCCcceecccccCCCC--ceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEE-eeCCCchHHHHHHH
Q 028618 13 TELI-GNTPLVYLNNIVNGCV--ARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLI-EPTSGNTGIGLAFM 88 (206)
Q Consensus 13 ~~~~-~~TPl~~~~~l~~~~g--~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv-~aSsGN~g~alA~~ 88 (206)
+..+ ++|||+++++|++.+| ++||+|+|++|||||||+|++.+++..+.++|. +.++ ++|+||||+|+|++
T Consensus 62 ~~l~g~pTPL~r~~~L~~~lg~~~~Iy~K~E~~nPtGS~K~R~A~~~~~~a~~~G~-----~~~vtetssGN~G~alA~a 136 (419)
T TIGR01415 62 YAQIGRPTPLIRAKGLEELLGTPARIYYKYESVSPTGSHKINTAIAQAYYAKIEGA-----KRLVTETGAGQWGSALSLA 136 (419)
T ss_pred HHhcCCCCCeEEccchhhhhCCCceEEEEECCCCCCCCcHHHHHHHHHHHHHHcCC-----CeEEEecCchHHHHHHHHH
Confidence 3445 5899999999998777 699999999999999999999999999999996 3455 46899999999999
Q ss_pred HHHCCCcEEEEeCCCC---CHHHHHHHHHcCCEEEEeCCCCChHH------------------HHHHHHHHHHhCC-CeE
Q 028618 89 AAAKQYRLIITMPASM---SLERRIILRAFGAELVLTDPAKGMKG------------------AVQKAEEILAKTP-NAY 146 (206)
Q Consensus 89 a~~~g~~~~ivvp~~~---~~~~~~~~~~~Ga~v~~~~~~~~~~~------------------~~~~a~~~~~~~~-~~~ 146 (206)
|+.+|++|+||||... ++.|+.+|+.+||+|+.++.+. ++ +++.+.+.+++.+ ..|
T Consensus 137 aa~~Gl~~~V~mp~~s~~~k~~k~~~m~~~GA~Vi~~~~~~--~~~~r~~~~~~p~~~gsl~~ai~~a~e~a~~~~~~~y 214 (419)
T TIGR01415 137 GALFGLECKVFMVRVSFNQKPYRKYLMELYGAEVIPSPSEF--TEFGREVLKEDPDHPGSLGIAISEAIEYALSDEDTKY 214 (419)
T ss_pred HHHcCCcEEEEEeCCCcccCHHHHHHHHHcCCEEEEECCch--hhHHHHhhhcccccccchHHHHHHHHHHHHhCCCCEE
Confidence 9999999999999854 5688999999999999999763 22 2556667776654 446
Q ss_pred EcCCCCCCccHHHHHHhHHHHHHhhhCC---CCCEEEEccCcchHHHHHHHHHHhc----CCCCeEC
Q 028618 147 MLQQFENPANPKIHYETTGPELWKGSGG---RIDALVSGIGTGGTITGAGKFLKEK----NPNIKVR 206 (206)
Q Consensus 147 ~~~~~~~~~~~~~g~~t~~~Ei~~q~~~---~~d~vv~~vG~Gg~~aGi~~~~k~~----~p~~~vi 206 (206)
+++++.|+ +..|+.++|.||++|++. .||+||+|+|+||+++|++.+|.+. .+++|||
T Consensus 215 ~~~~~~n~--~~~h~~~ig~Ei~~Ql~~~g~~pD~vv~~vG~Gg~~~Gi~~~f~~~~l~g~~~~rvi 279 (419)
T TIGR01415 215 SLGSVLNH--VLLHQTVIGLEAKKQMEEAGEDPDVIIGCVGGGSNFAGLAFPFVADKLSGKIDRRFI 279 (419)
T ss_pred EeCCCCcH--HHHHHHHHHHHHHHHHHhcCCCCCEEEEEeCchHHHHHHHHHHHHHHhcCCCCCEEE
Confidence 66665553 367999999999999964 4999999999999999999888432 3577775
No 71
>PLN02618 tryptophan synthase, beta chain
Probab=100.00 E-value=1.1e-39 Score=282.24 Aligned_cols=192 Identities=18% Similarity=0.247 Sum_probs=154.8
Q ss_pred hhhhcccc-CCcceecccccCCC------CceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCCchH
Q 028618 10 KDVTELIG-NTPLVYLNNIVNGC------VARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTG 82 (206)
Q Consensus 10 ~~i~~~~~-~TPl~~~~~l~~~~------g~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~aSsGN~g 82 (206)
..+.++++ +|||+++++|++.+ |++||+|+|++|||||||+|.+...+..|++.|+ +..|+++|+||||
T Consensus 57 ~~l~~~vGr~TPL~~~~~Ls~~~g~~~~~g~~IylK~E~lnptGS~K~R~a~~~~l~A~~~g~----~~vIaesgaGNhG 132 (410)
T PLN02618 57 GILKDYVGRETPLYFAERLTEHYKRADGEGPEIYLKREDLNHTGAHKINNAVAQALLAKRLGK----KRIIAETGAGQHG 132 (410)
T ss_pred HHHHHhcCCCCceeEhhhHHHHhccccCCCCEEEEEeCCCCCccchHHHHHHHHHHHHHHcCC----CEEEEEcCcHHHH
Confidence 34677886 89999999999876 5899999999999999999999999998988875 2445566799999
Q ss_pred HHHHHHHHHCCCcEEEEeCCCC---CHHHHHHHHHcCCEEEEeCC-CCChHHHH-HHHHHHHHhCCCeEEc-CCCC--C-
Q 028618 83 IGLAFMAAAKQYRLIITMPASM---SLERRIILRAFGAELVLTDP-AKGMKGAV-QKAEEILAKTPNAYML-QQFE--N- 153 (206)
Q Consensus 83 ~alA~~a~~~g~~~~ivvp~~~---~~~~~~~~~~~Ga~v~~~~~-~~~~~~~~-~~a~~~~~~~~~~~~~-~~~~--~- 153 (206)
+|+|++|+++|++|+||||+.. +..++.+|+.+||+|+.++. +..+.++. +.+++++++..+.+|+ ++.. +
T Consensus 133 ~AlA~aaa~~Gl~~~I~m~~~~~~~~~~nv~~mr~lGA~Vi~v~~g~~~~~dA~~ea~~~~~~~~~~~~yi~gs~~gp~P 212 (410)
T PLN02618 133 VATATVCARFGLECIVYMGAQDMERQALNVFRMRLLGAEVRPVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHP 212 (410)
T ss_pred HHHHHHHHHcCCcEEEEEcCCchhhhhhhHHHHHHCCCEEEEEeCCCCCHHHHHHHHHHHHHhccCCCEEEecCcCCCCC
Confidence 9999999999999999999964 35667799999999999954 33477776 4455677764455665 2221 1
Q ss_pred -CccHHHHHHhHHHHHHhhh----CCCCCEEEEccCcchHHHHHHHHHHhcCCCCeEC
Q 028618 154 -PANPKIHYETTGPELWKGS----GGRIDALVSGIGTGGTITGAGKFLKEKNPNIKVR 206 (206)
Q Consensus 154 -~~~~~~g~~t~~~Ei~~q~----~~~~d~vv~~vG~Gg~~aGi~~~~k~~~p~~~vi 206 (206)
+.....++.+++.||.+|+ +..||+||+|+|+||+++|++.+|+. .|++|||
T Consensus 213 ~~~~v~~~q~tig~Ei~~Q~~~~~g~~pD~VV~~VGgGg~~~Gi~~~f~~-~~~v~li 269 (410)
T PLN02618 213 YPMMVRDFHSVIGKETRRQAMEKWGGKPDVLVACVGGGSNAMGLFHEFID-DEDVRLI 269 (410)
T ss_pred CHHHHHHhhHHHHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHHh-CCCceEE
Confidence 2233579999999998776 34699999999999999999999975 6899986
No 72
>PRK12390 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=100.00 E-value=8.5e-40 Score=278.98 Aligned_cols=195 Identities=17% Similarity=0.126 Sum_probs=161.0
Q ss_pred chhhhhhccccCCcceecccccCCCC--ceEEEEeCCCCCC---CChhhHHHHHHHHHHHHcCCCCCCCeEEEee--CCC
Q 028618 7 NIAKDVTELIGNTPLVYLNNIVNGCV--ARIAAKLEMMEPC---SSVKDRIGYSMISDAEAKGLITPGESVLIEP--TSG 79 (206)
Q Consensus 7 ~~~~~i~~~~~~TPl~~~~~l~~~~g--~~i~~K~E~~~pt---GS~K~R~a~~~~~~a~~~g~~~~~~~~vv~a--SsG 79 (206)
.-+.++...+++|||++++++++..| .+||+|+|++||+ ||||+|.+.+++.++.++|. .+|+++ |+|
T Consensus 4 ~~~~~~~l~~g~TPL~~~~~l~~~~g~~~~v~~K~E~~n~~~~~gs~K~R~~~~~l~~a~~~G~-----~~vvs~G~s~G 78 (337)
T PRK12390 4 QKFPRYPLTFGPTPIHPLKRLSAHLGGKVELYAKREDCNSGLAFGGNKTRKLEYLVPDALAQGA-----DTLVSIGGVQS 78 (337)
T ss_pred CCCCccccCCCCCcceeHHHHHHHhCCCCeEEEEeCCCCCCCCccchhHHHHHHHHHHHHHcCC-----CEEEEeCCCcc
Confidence 34557888899999999999888777 7999999999987 78899999999999999997 577877 889
Q ss_pred chHHHHHHHHHHCCCcEEEEeCCCCC--------HHHHHHHHHcCCEEEEeCCCC--ChHHHHHHHHHHHHhCCCeEE-c
Q 028618 80 NTGIGLAFMAAAKQYRLIITMPASMS--------LERRIILRAFGAELVLTDPAK--GMKGAVQKAEEILAKTPNAYM-L 148 (206)
Q Consensus 80 N~g~alA~~a~~~g~~~~ivvp~~~~--------~~~~~~~~~~Ga~v~~~~~~~--~~~~~~~~a~~~~~~~~~~~~-~ 148 (206)
|||+|+|++|+.+|++|++|+|...+ ..++.+++.+||+|+.++.+. .+.++.+.+.+.+++.++..| +
T Consensus 79 N~g~alA~aa~~~G~~~~iv~~~~~p~~~~~~~~~~~~~~~~~~GA~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (337)
T PRK12390 79 NHTRQVAAVAAHLGMKCVLVQENWVNYEDAVYDRVGNILLSRIMGADVRLVPDGFDIGIRKSWEDALEDVRAAGGKPYAI 158 (337)
T ss_pred HHHHHHHHHHHHcCCeEEEEeCCCCCCccchhhccccHHHHHHCCCEEEEeCCCcchhHHHHHHHHHHHHHhCCCceEEe
Confidence 99999999999999999999876544 236778999999999998752 234666677777666444444 5
Q ss_pred CCCCCC-ccHHHHHHhHHHHHHhh---hCCCCCEEEEccCcchHHHHHHHHHHhcCCCCeEC
Q 028618 149 QQFENP-ANPKIHYETTGPELWKG---SGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKVR 206 (206)
Q Consensus 149 ~~~~~~-~~~~~g~~t~~~Ei~~q---~~~~~d~vv~~vG~Gg~~aGi~~~~k~~~p~~~vi 206 (206)
+.+.+. .....||.++++||++| ++++||+||+|+|||||++|++.+||+..|++|||
T Consensus 159 ~~~~~~~~~~~~G~~~~a~Ei~~q~~~~~~~~d~vvv~vGtGgtlaGi~~~~k~~~~~~rvi 220 (337)
T PRK12390 159 PAGASDHPLGGLGFVGFAEEVRAQEAELGFKFDYIVVCSVTGSTQAGMVVGFAADGRARRVI 220 (337)
T ss_pred CCcCCCCCcccHHHHHHHHHHHHHHHhcCCCCCEEEEecCcchhHHHHHHHHHhcCCCceEE
Confidence 554333 22256899999999998 44579999999999999999999999999999986
No 73
>PRK12391 tryptophan synthase subunit beta; Reviewed
Probab=100.00 E-value=2e-39 Score=282.79 Aligned_cols=189 Identities=20% Similarity=0.202 Sum_probs=155.5
Q ss_pred hhccccCCcceecccccCCCC--ceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEe-eCCCchHHHHHHH
Q 028618 12 VTELIGNTPLVYLNNIVNGCV--ARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIE-PTSGNTGIGLAFM 88 (206)
Q Consensus 12 i~~~~~~TPl~~~~~l~~~~g--~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~-aSsGN~g~alA~~ 88 (206)
++..+++|||+++++|++.+| .+||+|+|++||+||||+|++..++..+.++|. ..+++ +|+||||+|+|++
T Consensus 71 ~~~~~~~TPL~~~~~L~~~lg~~~~Iy~K~E~~nPtGS~K~R~A~~~a~~a~~~G~-----~~~vtetgsGN~G~alA~a 145 (427)
T PRK12391 71 IYRLWRPTPLIRARRLEKALGTPAKIYYKYEGVSPTGSHKPNTAVAQAYYNKKEGI-----KRLTTETGAGQWGSALALA 145 (427)
T ss_pred HHcccCCCCeeEchhhHhhhCCCceEEEEEcCCCCCCChHHHHHHHHHHHHHHCCC-----CEEEEccCchHHHHHHHHH
Confidence 456778999999999998776 699999999999999999999999999999996 34555 6789999999999
Q ss_pred HHHCCCcEEEEeCCC---CCHHHHHHHHHcCCEEEEeCCCCC----------------hHHHHHHHHHHHHhCCCeEEcC
Q 028618 89 AAAKQYRLIITMPAS---MSLERRIILRAFGAELVLTDPAKG----------------MKGAVQKAEEILAKTPNAYMLQ 149 (206)
Q Consensus 89 a~~~g~~~~ivvp~~---~~~~~~~~~~~~Ga~v~~~~~~~~----------------~~~~~~~a~~~~~~~~~~~~~~ 149 (206)
|+.+|++|+||||+. .++.|+.+|+.+||+|+.++.+.. ...+++.+.+.+++.++.+|+.
T Consensus 146 aa~~Gl~~~V~mp~~s~~~k~~r~~~mr~~GA~Vi~~~~~~~~~~~~~~~~~~~~~gsl~~ai~~A~e~a~~~~~~~y~~ 225 (427)
T PRK12391 146 CALFGLECTVFMVRVSYEQKPYRRSLMETYGAEVIPSPSDLTEAGRKILAEDPDHPGSLGIAISEAVEDAAKRPDTKYAL 225 (427)
T ss_pred HHHcCCcEEEEEecCCcccCHHHHHHHHHCCCEEEEECCchhhhhhhhhhcCccccccHHHHHHHHHHHHHhCCCcEEEc
Confidence 999999999999974 367889999999999999986521 1114666777777655655554
Q ss_pred CCCCCccHHHHHHhHHHHHHhhhC---CCCCEEEEccCcchHHHHHHHHHHh---cC-CCCeEC
Q 028618 150 QFENPANPKIHYETTGPELWKGSG---GRIDALVSGIGTGGTITGAGKFLKE---KN-PNIKVR 206 (206)
Q Consensus 150 ~~~~~~~~~~g~~t~~~Ei~~q~~---~~~d~vv~~vG~Gg~~aGi~~~~k~---~~-p~~~vi 206 (206)
++.+ .++..||.+++.||++|+. ..||+||+|+|+||+++|++.+|.+ .+ +++|||
T Consensus 226 ~s~~-~~~~~~~~~ig~Ei~~Ql~~~g~~pD~Vv~~vG~Gg~~aGi~~~f~~~~~~g~~~~rii 288 (427)
T PRK12391 226 GSVL-NHVLLHQTVIGLEAKKQLELAGEYPDVVIGCVGGGSNFAGLAFPFLGDKLEGKKDTRFI 288 (427)
T ss_pred CCCC-cHHHhhHHHHHHHHHHHHHhcCCCCCEEEEecCchHHHHHHHHHHHHHHhcCCCCceEE
Confidence 4333 3447799999999999985 3699999999999999999987733 34 788875
No 74
>cd06449 ACCD Aminocyclopropane-1-carboxylate deaminase (ACCD): Pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of 1-aminocyclopropane-L-carboxylate (ACC), a precursor of the plant hormone ethylene, to alpha-ketobutyrate and ammonia.
Probab=100.00 E-value=7.7e-40 Score=276.02 Aligned_cols=182 Identities=23% Similarity=0.232 Sum_probs=152.2
Q ss_pred CcceecccccCCC--CceEEEEeCCCCCC---CChhhHHHHHHHHHHHHcCCCCCCCeEEEee--CCCchHHHHHHHHHH
Q 028618 19 TPLVYLNNIVNGC--VARIAAKLEMMEPC---SSVKDRIGYSMISDAEAKGLITPGESVLIEP--TSGNTGIGLAFMAAA 91 (206)
Q Consensus 19 TPl~~~~~l~~~~--g~~i~~K~E~~~pt---GS~K~R~a~~~~~~a~~~g~~~~~~~~vv~a--SsGN~g~alA~~a~~ 91 (206)
|||++++++++.+ +.+||+|+|++||+ ||+|+|++.+++.++.++|. +.||++ |+||||.|+|++|+.
T Consensus 1 TPl~~~~~l~~~~g~~~~l~~K~E~~np~gsfgs~K~R~~~~~l~~a~~~g~-----~~vv~~ggs~GN~g~alA~~a~~ 75 (307)
T cd06449 1 TPIQYLPRLSEHLGGKVEIYAKRDDCNSGLAFGGNKIRKLEYLLPDALAKGA-----DTLVTVGGIQSNHTRQVAAVAAK 75 (307)
T ss_pred CcccchhHHHHhhCCCCcEEEecccccCCCCccchHHHHHHHHHHHHHHcCC-----CEEEECCCchhHHHHHHHHHHHH
Confidence 8999999998877 57999999999999 56699999999999999887 578887 689999999999999
Q ss_pred CCCcEEEEeCCCCC--------HHHHHHHHHcCCEEEEeCCCCC--hHHHHHHH-HHHHHhCCCeEE-cCCC-CCCccHH
Q 028618 92 KQYRLIITMPASMS--------LERRIILRAFGAELVLTDPAKG--MKGAVQKA-EEILAKTPNAYM-LQQF-ENPANPK 158 (206)
Q Consensus 92 ~g~~~~ivvp~~~~--------~~~~~~~~~~Ga~v~~~~~~~~--~~~~~~~a-~~~~~~~~~~~~-~~~~-~~~~~~~ 158 (206)
+|++|++|||++.+ ..|+++++.+||+|+.++.+.. ...+...+ +++.++.+..++ .+++ +|+.+ .
T Consensus 76 ~G~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 154 (307)
T cd06449 76 LGLKCVLVQENWVPYSDAVYDRVGNILLSRIMGADVRLVSAGFDIGIRKSFEEAAEEVEAKGGKPYVIPAGGSEHPLG-G 154 (307)
T ss_pred cCCeEEEEecCCCCcccccccccccHHHHHHCCCEEEEECCcchhhHHHHHHHHHHHHHHcCCceEEecCCCCCCccc-H
Confidence 99999999999876 4688999999999999987631 12223333 333333323344 5555 48888 6
Q ss_pred HHHHhHHHHHHhhhCC---CCCEEEEccCcchHHHHHHHHHHhcCCCCeEC
Q 028618 159 IHYETTGPELWKGSGG---RIDALVSGIGTGGTITGAGKFLKEKNPNIKVR 206 (206)
Q Consensus 159 ~g~~t~~~Ei~~q~~~---~~d~vv~~vG~Gg~~aGi~~~~k~~~p~~~vi 206 (206)
.||.+++.||++|++. .||+||+|+|||||++|++.+||+.+|++|||
T Consensus 155 ~G~~t~~~Ei~~q~~~~~~~~d~vv~~~GtGgt~~G~~~~~~~~~~~~~ii 205 (307)
T cd06449 155 LGYVGFVLEIAQQEEELGFKFDSIVVCSVTGSTHAGLSVGLAALGRQRRVI 205 (307)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCEEEEeCCchHHHHHHHHHHHhcCCCCeEE
Confidence 7999999999999854 69999999999999999999999999999986
No 75
>cd06446 Trp-synth_B Tryptophan synthase-beta: Trptophan synthase is a bifunctional enzyme that catalyses the last two steps in the biosynthesis of L-tryptophan via its alpha and beta reactions. In the alpha reaction, indole 3-glycerol phosphate is cleaved reversibly to glyceraldehyde 3-phosphate and indole at the active site of the alpha subunit. In the beta reaction, indole undergoes a PLP-dependent reaction with L-serine to form L-tryptophan at the active site of the beta subunit. Members of this CD, Trp-synth_B, are found in all three major phylogenetic divisions.
Probab=100.00 E-value=2.6e-39 Score=278.47 Aligned_cols=191 Identities=19% Similarity=0.160 Sum_probs=151.8
Q ss_pred hhhccc-cCCcceecccccCCC-CceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCCchHHHHHHH
Q 028618 11 DVTELI-GNTPLVYLNNIVNGC-VARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFM 88 (206)
Q Consensus 11 ~i~~~~-~~TPl~~~~~l~~~~-g~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~aSsGN~g~alA~~ 88 (206)
...+++ .+|||++++++++.+ +.+||+|+|++||+||||+|++..++..+.++|. +..++++|+||||+|+|++
T Consensus 26 ~~~~~~~~~TPL~~l~~l~~~~g~~~l~~K~E~~nptgS~K~R~a~~~~~~a~~~g~----~~vv~~~ssGN~g~alA~~ 101 (365)
T cd06446 26 LYKDYVGRPTPLYRAKRLSEYLGGAKIYLKREDLNHTGAHKINNALGQALLAKRMGK----KRVIAETGAGQHGVATATA 101 (365)
T ss_pred HhhccCCCCCCceehHHHHHhhCCceEEEEeccCCCccchhHHHHHHHHHHHHHcCC----CeEEEecCchHHHHHHHHH
Confidence 334444 489999999999877 5799999999999999999999999999999886 1334447999999999999
Q ss_pred HHHCCCcEEEEeCCCCC---HHHHHHHHHcCCEEEEeCCCC-ChHHHHHHHHHH-HHhCCC-eEEcCCC----CCCccHH
Q 028618 89 AAAKQYRLIITMPASMS---LERRIILRAFGAELVLTDPAK-GMKGAVQKAEEI-LAKTPN-AYMLQQF----ENPANPK 158 (206)
Q Consensus 89 a~~~g~~~~ivvp~~~~---~~~~~~~~~~Ga~v~~~~~~~-~~~~~~~~a~~~-~~~~~~-~~~~~~~----~~~~~~~ 158 (206)
|+.+|++|+||+|+..+ +.++.+++.+||+|+.++... .++++...+.+. +++.++ +|+++++ .++.+++
T Consensus 102 a~~~G~~~~ivvp~~~~~~~~~~~~~~~~~GAeV~~~~~~~~~~~~~~~~a~~~~~~~~~~~~y~~~~~~~~~~~~~~~~ 181 (365)
T cd06446 102 CALFGLECEIYMGAVDVERQPLNVFRMELLGAEVVPVPSGSGTLKDAISEAIRDWVTNVEDTHYLLGSVVGPHPYPNMVR 181 (365)
T ss_pred HHHhCCCeEEEEcCCccccccchHHHHHHCCCEEEEeCCCCCcHHHHHHHHHHHHHhccCCceEecccccCCCCchHHHH
Confidence 99999999999998643 367889999999999998642 245665444443 443223 4444332 2234568
Q ss_pred HHHHhHHHHHHhhhC----CCCCEEEEccCcchHHHHHHHHHHhcCCCCeEC
Q 028618 159 IHYETTGPELWKGSG----GRIDALVSGIGTGGTITGAGKFLKEKNPNIKVR 206 (206)
Q Consensus 159 ~g~~t~~~Ei~~q~~----~~~d~vv~~vG~Gg~~aGi~~~~k~~~p~~~vi 206 (206)
+||+|++.||++|+. ..||+||+|+|+||+++|++.++++ .+++|||
T Consensus 182 ag~~t~~~EI~~Q~~~~~~~~~D~vv~~vG~GGt~~Gi~~g~~~-~~~~~vi 232 (365)
T cd06446 182 DFQSVIGEEAKKQILEKEGELPDVVIACVGGGSNAAGLFYPFIN-DKDVKLI 232 (365)
T ss_pred HhhhHHHHHHHHHHHHhcCCCCCEEEEecCccHHHHHHHHHHHh-CCCceEE
Confidence 899999999999985 3699999999999999999998877 4688875
No 76
>TIGR01274 ACC_deam 1-aminocyclopropane-1-carboxylate deaminase. This pyridoxal phosphate-dependent enzyme degrades 1-aminocyclopropane-1-carboxylate, which in plants is a precursor of the ripening hormone ethylene, to ammonia and alpha-ketoglutarate. This model includes all members of this family for which function has been demonstrated experimentally, but excludes a closely related family often annotated as putative members of this family.
Probab=100.00 E-value=3.4e-39 Score=275.24 Aligned_cols=193 Identities=18% Similarity=0.146 Sum_probs=160.5
Q ss_pred hhhhhhccccCCcceecccccCCCCc--eEEEEeCCCCCC---CChhhHHHHHHHHHHHHcCCCCCCCeEEEee--CCCc
Q 028618 8 IAKDVTELIGNTPLVYLNNIVNGCVA--RIAAKLEMMEPC---SSVKDRIGYSMISDAEAKGLITPGESVLIEP--TSGN 80 (206)
Q Consensus 8 ~~~~i~~~~~~TPl~~~~~l~~~~g~--~i~~K~E~~~pt---GS~K~R~a~~~~~~a~~~g~~~~~~~~vv~a--SsGN 80 (206)
-+.++...+++|||++++++++.+|. +||+|+|++||+ ||||+|.+.+++.+++++|. .+|+++ |+||
T Consensus 4 ~~~~~~l~~g~TPl~~~~~l~~~~g~~~~l~~K~E~~n~~~~~gs~K~R~~~~~l~~a~~~G~-----~~vvs~ggs~gN 78 (337)
T TIGR01274 4 RFPRYPLTFGPSPIHPLPRLSQHLGGKVTLYAKREDCNSGLAFGGNKTRKLEYLIPDAQAQGC-----TTLVSIGGIQSN 78 (337)
T ss_pred cCCccccCCCCCCceEhHhhHHhcCCCceEEEEccCCcCCcCccchHHHHHHHHHHHHHHcCC-----CEEEECCCCcch
Confidence 35677888999999999999988774 999999999986 77899999999999999997 567876 7799
Q ss_pred hHHHHHHHHHHCCCcEEEEeCCCCC--------HHHHHHHHHcCCEEEEeCCCCC--hHHHHHHHHHHHHhC-CCeEEcC
Q 028618 81 TGIGLAFMAAAKQYRLIITMPASMS--------LERRIILRAFGAELVLTDPAKG--MKGAVQKAEEILAKT-PNAYMLQ 149 (206)
Q Consensus 81 ~g~alA~~a~~~g~~~~ivvp~~~~--------~~~~~~~~~~Ga~v~~~~~~~~--~~~~~~~a~~~~~~~-~~~~~~~ 149 (206)
||+|+|++|+.+|++|++|||+..+ ..|+.+++.+||+|+.++.+.. ..++...+.+.+++. +..++++
T Consensus 79 ~g~alA~~a~~~Gl~~~iv~~~~~~~~~~~~~~~~~~~~~~~~GA~v~~v~~~~~~~~~~~~~~a~~~~~~~~~~~~~i~ 158 (337)
T TIGR01274 79 QTRQVAAVAAHLGMKCVLVQENWVNYSDAVYDRVGNIQLSRIMGADVRLDPDGFDIGHRNSWERALEEVRGAGGKPYPIP 158 (337)
T ss_pred HHHHHHHHHHHcCCcEEEEeccCCCccccchhccchHHHHHHcCCEEEEeCCcccccchHHHHHHHHHHHhcCCceEEeC
Confidence 9999999999999999999998542 5889999999999999987521 235555566555554 3336666
Q ss_pred CCCC--CccHHHHHHhHHHHHHhhh---CCCCCEEEEccCcchHHHHHHHHHHhcCCCCeEC
Q 028618 150 QFEN--PANPKIHYETTGPELWKGS---GGRIDALVSGIGTGGTITGAGKFLKEKNPNIKVR 206 (206)
Q Consensus 150 ~~~~--~~~~~~g~~t~~~Ei~~q~---~~~~d~vv~~vG~Gg~~aGi~~~~k~~~p~~~vi 206 (206)
.+.+ +.. ..|+.+++.||++|+ +..||+||+|+|||||++|++.++++..|++|||
T Consensus 159 ~~~~~~~~~-~~G~~~~~~Ei~eq~~~~~~~~D~vvv~vGtGgt~aGl~~~~~~~~~~~~vi 219 (337)
T TIGR01274 159 AGCSDHPLG-GLGFVGFAFEVREQEGELGFKFDYVVVCSVTGSTQAGMVAGFAADGRKDRVI 219 (337)
T ss_pred CCCCCCccc-hhHHHHHHHHHHHHHHhcCCCCCEEEEeCCchHhHHHHHHHHHHhCCCCeEE
Confidence 5533 444 468899999999995 3479999999999999999999999999999986
No 77
>TIGR03844 cysteate_syn cysteate synthase. Members of this family are cysteate synthase, an enzyme of alternate pathway to sulfopyruvate, a precursor of coenzyme M.
Probab=100.00 E-value=3.2e-39 Score=279.89 Aligned_cols=175 Identities=17% Similarity=0.089 Sum_probs=153.1
Q ss_pred cccCCcceecccccCCCCc-eEEEEeC-------CCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCCchHHHHH
Q 028618 15 LIGNTPLVYLNNIVNGCVA-RIAAKLE-------MMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLA 86 (206)
Q Consensus 15 ~~~~TPl~~~~~l~~~~g~-~i~~K~E-------~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~aSsGN~g~alA 86 (206)
..+.|||+++++|++.+|. ++|+|+| ++|||||||||++.+++..+.++|. +.||++|+||||+|+|
T Consensus 59 ~~g~tpl~~~~~L~~~lG~~~v~~K~e~~~~K~E~~npTGSFKdRga~~~i~~a~~~g~-----~~Vv~aSsGN~g~alA 133 (398)
T TIGR03844 59 TRGGPVTYKSEGLARELGLSDLYITFSGYWPERGAFMRTCSFKELEALPTMQRLKERGG-----KTLVVASAGNTGRAFA 133 (398)
T ss_pred CCCCCceeehHHHHHHhCCCeEEEEecCcccchhccCCccccHHHHHHHHHHHHHHcCC-----CEEEEECCCHHHHHHH
Confidence 4567999999999999998 9999555 4899999999999999999999884 6899999999999999
Q ss_pred HHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHHHHhHHH
Q 028618 87 FMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGP 166 (206)
Q Consensus 87 ~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~ 166 (206)
++|+++|++|+||||++++..+...++.+|++|+.++++ ++++.+.++++++++ +++..++++||.. ++|++|+++
T Consensus 134 ~~aa~~Gi~~~I~vP~~~~~~~~~~~~~~ga~vv~v~g~--~d~a~~~a~~~a~~~-g~~~~~~~~~p~~-ieG~~Ti~~ 209 (398)
T TIGR03844 134 EVSAITGQPVILVVPKSSADRLWTTEPASSVLLVTVDGD--YTDAIALADRIATLP-GFVPEGGARNVAR-RDGMGTVML 209 (398)
T ss_pred HHHHHcCCcEEEEECCChHHHHHHHhhCCcEEEEECCCC--HHHHHHHHHHHHHhC-CccccCCCCCHHH-HhhHHHHHH
Confidence 999999999999999986544444457899999999987 889999999998875 6655566678886 789999999
Q ss_pred HHHhhhCCCCCEEEEccCcchHHHHHHHHHHh
Q 028618 167 ELWKGSGGRIDALVSGIGTGGTITGAGKFLKE 198 (206)
Q Consensus 167 Ei~~q~~~~~d~vv~~vG~Gg~~aGi~~~~k~ 198 (206)
||++|++..||+||+|+|+|+++.|++.++++
T Consensus 210 Ei~eql~~~PD~VvvPvG~G~~~~~~~~~~~~ 241 (398)
T TIGR03844 210 DAAVTIGSLPDHYFQAVGSGTGGIAAWEAAMR 241 (398)
T ss_pred HHHHHcCCCCCEEEEecCCCHHHHHHHHHHHH
Confidence 99999974599999999999889999998887
No 78
>PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional
Probab=100.00 E-value=1.1e-37 Score=282.83 Aligned_cols=190 Identities=21% Similarity=0.218 Sum_probs=154.9
Q ss_pred hhcccc-CCcceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCCchHHHHHHHHH
Q 028618 12 VTELIG-NTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAA 90 (206)
Q Consensus 12 i~~~~~-~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~aSsGN~g~alA~~a~ 90 (206)
...+++ +|||+++++|++.+|.+||+|+|++|||||||+|.+...+..+++.|+ +..++++|+||||+|+|++|+
T Consensus 264 ~~~~~grpTPL~~~~~Ls~~~G~~IylK~E~lnptGS~K~r~al~~~~~a~~~g~----~~vi~e~gsGnhG~A~A~~aa 339 (610)
T PRK13803 264 LQNYAGRPTPLTEAKRLSDIYGARIYLKREDLNHTGSHKINNALGQALLAKRMGK----TRIIAETGAGQHGVATATACA 339 (610)
T ss_pred HHHhCCCCCcceeHHHHHHhhCCEEEEEeCCCCCcccHHHHHHHHHHHHHHHcCC----CEEEEecChHHHHHHHHHHHH
Confidence 345565 799999999998889999999999999999999999999999988885 245667899999999999999
Q ss_pred HCCCcEEEEeCCCC---CHHHHHHHHHcCCEEEEeCCC-CChHHHHHHH-HHHHHhCCCeEEcCCCC---C--CccHHHH
Q 028618 91 AKQYRLIITMPASM---SLERRIILRAFGAELVLTDPA-KGMKGAVQKA-EEILAKTPNAYMLQQFE---N--PANPKIH 160 (206)
Q Consensus 91 ~~g~~~~ivvp~~~---~~~~~~~~~~~Ga~v~~~~~~-~~~~~~~~~a-~~~~~~~~~~~~~~~~~---~--~~~~~~g 160 (206)
++|++|+||||+.. ...++.+|+.+||+|+.++.. ..+.++...+ +++..+.++.+|+.++. + |.++..|
T Consensus 340 ~~Gl~~~I~m~~~~~~~~~~nv~~m~~~GA~Vi~v~~~~~~~~~a~~~a~~~~~~~~~~~~y~~~~~~g~~p~p~~v~~~ 419 (610)
T PRK13803 340 LFGLKCTIFMGEEDIKRQALNVERMKLLGANVIPVLSGSKTLKDAVNEAIRDWVASVPDTHYLIGSAVGPHPYPEMVAYF 419 (610)
T ss_pred HcCCcEEEEEeCCcccchhhHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEeCCcCCCCCcHHHHHHH
Confidence 99999999999874 356788999999999999853 2355665444 44545555677764432 2 3343458
Q ss_pred HHhHHHHHHhhhC----CCCCEEEEccCcchHHHHHHHHHHhcCCCCeEC
Q 028618 161 YETTGPELWKGSG----GRIDALVSGIGTGGTITGAGKFLKEKNPNIKVR 206 (206)
Q Consensus 161 ~~t~~~Ei~~q~~----~~~d~vv~~vG~Gg~~aGi~~~~k~~~p~~~vi 206 (206)
++|++.||++|+. ..||+||+|+|+||+++|++.+|++ .|+++||
T Consensus 420 ~~tig~Ei~~Q~~~~~g~~pD~vV~~vGgGg~~~Gi~~~f~~-~~~v~ii 468 (610)
T PRK13803 420 QSVIGEEAKEQLKEQTGKLPDAIIACVGGGSNAIGIFYHFLD-DPSVKLI 468 (610)
T ss_pred hhHHHHHHHHHHHHhhCCCCCEEEEEeCcCHhHHHHHHHHhh-CCCceEE
Confidence 9999999999984 2599999999999999999999965 7888885
No 79
>COG0498 ThrC Threonine synthase [Amino acid transport and metabolism]
Probab=100.00 E-value=2.1e-33 Score=242.24 Aligned_cols=184 Identities=24% Similarity=0.212 Sum_probs=166.9
Q ss_pred hhccccCCcceecccccCCCCc---eEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCCchHHHHHHH
Q 028618 12 VTELIGNTPLVYLNNIVNGCVA---RIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFM 88 (206)
Q Consensus 12 i~~~~~~TPl~~~~~l~~~~g~---~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~aSsGN~g~alA~~ 88 (206)
.....+.||+++.+++...++. ++|+|.|.+|||||||||++..++..+.+.|. .+|+++||||+|.|+|.+
T Consensus 70 ~~l~eg~tp~~~~~~~~~~l~~~~~~lyvk~~~~nPT~SFKDrg~~~~~~~~~~~g~-----~~I~~ASSGnTgAs~aay 144 (411)
T COG0498 70 VSLGEGGTPLYKAPALAAPLGVLNDNLYVKELGHNPTGSFKDRGMTVLVSLAKELGA-----KTILCASSGNTGASAAAY 144 (411)
T ss_pred hhhhhccCccccCcccchhhccCCcceehhhhccCCCcchhhhhHHHHHHHHHHhcC-----CEEEEeCCchHHHHHHHH
Confidence 4556678999999888887774 59999999999999999999999999999884 379999999999999999
Q ss_pred HHHCCCcEEEEeCCC-CCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHHHHhHHHH
Q 028618 89 AAAKQYRLIITMPAS-MSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPE 167 (206)
Q Consensus 89 a~~~g~~~~ivvp~~-~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~E 167 (206)
+.+.|++|.|++|.+ .+..|+.+|..+|++++.++++ +++|.+.+++.+++. ++++....-||.. ++|+.|+++|
T Consensus 145 a~rag~~v~Vl~P~g~vs~~k~~q~~~~ga~~i~v~G~--fDda~~~vk~~~~~~-~~~~~~nsiNp~r-legq~t~~fe 220 (411)
T COG0498 145 AARAGLKVFVLYPKGKVSPGKLAQMLTLGAHVIAVDGN--FDDAQELVKEAANRE-GLLSAVNSINPYR-LEGQKTYAFE 220 (411)
T ss_pred hccCCCeEEEEecCCCCCHHHHHHHHhcCCEEEEEcCc--HHHHHHHHHHHHhhC-CceeeccccCHHH-hhhhhhhHhH
Confidence 999999999999998 9999999999999999999999 889999999999966 5677777778887 7899999999
Q ss_pred HHhhhCC-CCCEEEEccCcchHHHHHHHHHHhcCCCCe
Q 028618 168 LWKGSGG-RIDALVSGIGTGGTITGAGKFLKEKNPNIK 204 (206)
Q Consensus 168 i~~q~~~-~~d~vv~~vG~Gg~~aGi~~~~k~~~p~~~ 204 (206)
|++|+++ .||+|++|+|+||++.|++.+|++..|.-+
T Consensus 221 ~~~ql~~~~p~~v~vPvGn~gni~a~~~g~~~~~~~g~ 258 (411)
T COG0498 221 IAEQLGWKAPDHVVVPVGNGGNLLAIYKGFKEGLPIGK 258 (411)
T ss_pred HHHHhCCCCCCeEEEeCCchHHHHHHHHHHHhcccccc
Confidence 9999974 799999999999999999999999877543
No 80
>COG2515 Acd 1-aminocyclopropane-1-carboxylate deaminase [Amino acid transport and metabolism]
Probab=99.95 E-value=2.3e-27 Score=193.91 Aligned_cols=195 Identities=18% Similarity=0.177 Sum_probs=158.5
Q ss_pred cchhhhhhccccCCcceecccccCCCCceEEEEeCCCCCC--CChhhHHHHHHHHHHHHcCCCCCCCeEEEeeC--CCch
Q 028618 6 SNIAKDVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPC--SSVKDRIGYSMISDAEAKGLITPGESVLIEPT--SGNT 81 (206)
Q Consensus 6 ~~~~~~i~~~~~~TPl~~~~~l~~~~g~~i~~K~E~~~pt--GS~K~R~a~~~~~~a~~~g~~~~~~~~vv~aS--sGN~ 81 (206)
+..++++.....+||+..++++++..|++||+|+|+..+- |.+|.|...+++.+|.++|. +++|+.. .+||
T Consensus 3 l~rf~R~~l~~~pTPiq~L~rls~~lg~eiYiKRDD~t~l~~gGNK~RKLefll~eal~~g~-----dTlvT~GgiQSNh 77 (323)
T COG2515 3 LSRFPRMELIFGPTPIQKLPRLSAHLGVEIYIKRDDLTGLAFGGNKIRKLEFLLGEALRKGA-----DTLVTYGGIQSNH 77 (323)
T ss_pred cccCCccccCCCCChhhhHHHHHHhcCeEEEEEcccccccccCccHHHHHHHHHhhhhhcCC-----cEEEEecccchhH
Confidence 4457788888899999999999999999999999999653 89999999999999999997 6788874 4999
Q ss_pred HHHHHHHHHHCCCcEEEEeCCCC----CHHHHHHHHHcCCEEEEeCCCCCh--HHHHHHHHHHHHhCCCeEEc-CCCC-C
Q 028618 82 GIGLAFMAAAKQYRLIITMPASM----SLERRIILRAFGAELVLTDPAKGM--KGAVQKAEEILAKTPNAYML-QQFE-N 153 (206)
Q Consensus 82 g~alA~~a~~~g~~~~ivvp~~~----~~~~~~~~~~~Ga~v~~~~~~~~~--~~~~~~a~~~~~~~~~~~~~-~~~~-~ 153 (206)
.+++|++|+++|++|+.++.... ...++...+.+|+++..++...++ +...+...+..++.++..|+ +... |
T Consensus 78 ~r~tAavA~~lGl~~v~ile~~~~~y~~ngn~Ll~~l~G~~~~~~~~~~d~~~~~~~~~~~e~~~~~g~kpyvIp~GG~~ 157 (323)
T COG2515 78 VRQTAAVAAKLGLKCVLILENIEANYLLNGNLLLSKLMGAEVRAVDAGTDIGINASAEELAEEVRKQGGKPYVIPEGGSS 157 (323)
T ss_pred HHHHHHHHHhcCCcEEEEEeccccccccccchhhhhhcCceEEEecCCCChhhchhhHHHHHHHHhcCCCCcEeccCCcC
Confidence 99999999999999999997654 223566678899999999977544 33334444444444454443 3333 4
Q ss_pred CccHHHHHHhHHHHHHhhhC--CCCCEEEEccCcchHHHHHHHHHHhcCCCCeEC
Q 028618 154 PANPKIHYETTGPELWKGSG--GRIDALVSGIGTGGTITGAGKFLKEKNPNIKVR 206 (206)
Q Consensus 154 ~~~~~~g~~t~~~Ei~~q~~--~~~d~vv~~vG~Gg~~aGi~~~~k~~~p~~~vi 206 (206)
|.- ..||...+.||.+|.. -++|+||+++|||||.||++.++...+|+++||
T Consensus 158 ~~g-~lGyv~~a~Ei~~Q~~~~~~fD~vVva~gs~gT~AGl~~g~~~~~~~~~Vi 211 (323)
T COG2515 158 PLG-ALGYVRLALEIAEQAEQLLKFDSVVVAPGSGGTHAGLLVGLAQLGPDVEVI 211 (323)
T ss_pred ccc-cccHHHHHHHHHHHHhhccCCCEEEEeCCCcchHHHHHHHhhhccCCCceE
Confidence 433 4699999999999986 479999999999999999999999999999986
No 81
>COG0133 TrpB Tryptophan synthase beta chain [Amino acid transport and metabolism]
Probab=99.94 E-value=4.7e-26 Score=186.94 Aligned_cols=190 Identities=21% Similarity=0.240 Sum_probs=153.2
Q ss_pred hhcccc-CCcceecccccCCCCceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCCchHHHHHHHHH
Q 028618 12 VTELIG-NTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAA 90 (206)
Q Consensus 12 i~~~~~-~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~aSsGN~g~alA~~a~ 90 (206)
+..+.| +|||+..++|++.+|.+||+|+|++|+||++|..-+...+..|++.|+ ++.|.+...|.||.|.|.+|+
T Consensus 49 l~~Y~GRptpLy~a~~Lt~~~gakiyLKREDL~HtGAHKiNN~lGQ~LLAkrMGK----~riIAETGAGQHGVAtAta~A 124 (396)
T COG0133 49 LKDYAGRPTPLYFAERLTEHLGAKIYLKREDLNHTGAHKINNALGQALLAKRMGK----TRIIAETGAGQHGVATATAAA 124 (396)
T ss_pred HHHhCCCCChhHHHHHHHHhhCceEEEehhhhcccchhhHHHHHHHHHHHHHhCC----ceEEeecCCCcccHHHHHHHH
Confidence 444554 699999999999999999999999999999999999999999999998 467788888999999999999
Q ss_pred HCCCcEEEEeCCC-C--CHHHHHHHHHcCCEEEEeCC-CCChHHHHHHH-HHHHHhCCCeEEcC-----CCCCCccHHHH
Q 028618 91 AKQYRLIITMPAS-M--SLERRIILRAFGAELVLTDP-AKGMKGAVQKA-EEILAKTPNAYMLQ-----QFENPANPKIH 160 (206)
Q Consensus 91 ~~g~~~~ivvp~~-~--~~~~~~~~~~~Ga~v~~~~~-~~~~~~~~~~a-~~~~~~~~~~~~~~-----~~~~~~~~~~g 160 (206)
++|++|+|||-.. . ...+.-+|+.+||+|+.|.. +....++...| +.|.....+.+|+- |.--|.....-
T Consensus 125 ~fgl~C~iYMGa~Dv~RQ~~NVfRM~LlGA~V~pV~sGs~TLKDA~neAlRdWvtn~~~ThY~iGsa~GPHPyP~iVRdF 204 (396)
T COG0133 125 LFGLECVIYMGAEDVERQALNVFRMRLLGAEVVPVTSGSGTLKDAINEALRDWVTNVEDTHYLIGSAAGPHPYPTIVRDF 204 (396)
T ss_pred HhCCceEEEecchhhhhcccchhhhhhcCceEEEeccCCchHHHHHHHHHHHHHhccccceEEEeeccCCCCchHHHHHH
Confidence 9999999999653 3 23456688999999999964 33455665554 57888777788842 22223443456
Q ss_pred HHhHHHHHHhhh----CCCCCEEEEccCcchHHHHHHHHHHhcCCCCeEC
Q 028618 161 YETTGPELWKGS----GGRIDALVSGIGTGGTITGAGKFLKEKNPNIKVR 206 (206)
Q Consensus 161 ~~t~~~Ei~~q~----~~~~d~vv~~vG~Gg~~aGi~~~~k~~~p~~~vi 206 (206)
++.++.|..+|+ +.-||+||.|+|+|++..|+...|... +++++|
T Consensus 205 Q~vIG~E~k~Qile~egrlPD~vvACVGGGSNAiG~F~~Fi~d-~~V~Li 253 (396)
T COG0133 205 QSVIGEEAKAQILEKEGRLPDAVVACVGGGSNAIGIFHPFIDD-ESVRLI 253 (396)
T ss_pred HHHHhHHHHHHHHHHhCCCCCeEEEeccCCcchhhhcccccCC-CCceEE
Confidence 888999987775 445999999999999999999888653 667764
No 82
>cd01560 Thr-synth_2 Threonine synthase catalyzes the final step of threonine biosynthesis. The conversion of O-phosphohomoserine into threonine and inorganic phosphate is pyridoxal 5'-phosphate dependent. The Thr-synth_1 CD includes members from higher plants, cyanobacteria, archaebacteria and eubacterial groups. This CD, Thr-synth_2, includes enzymes from fungi and eubacterial groups, as well as, metazoan threonine synthase-like proteins.
Probab=99.91 E-value=3.5e-23 Score=182.19 Aligned_cols=169 Identities=14% Similarity=0.068 Sum_probs=137.7
Q ss_pred CcceecccccCCCCceEEEEeCCCCCCCChhhHHHHHH---HHHHHHcCCCCCCCeEEEeeCCCchHHH-HHHHHHHCCC
Q 028618 19 TPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSM---ISDAEAKGLITPGESVLIEPTSGNTGIG-LAFMAAAKQY 94 (206)
Q Consensus 19 TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~~---~~~a~~~g~~~~~~~~vv~aSsGN~g~a-lA~~a~~~g~ 94 (206)
+||.++. .++|++...++||||||||++..+ +..+.++.. +...|+++||||+|.| ++.++.+.|+
T Consensus 88 ~pl~~l~-------~~~~~lELfhGPT~sFKD~a~~~l~~l~~~~~~~~~---~~~~Il~ATSGdTG~Aa~aaf~~~~gi 157 (460)
T cd01560 88 APLVQLG-------DNLYVLELFHGPTLAFKDMALQFLGRLLEYFLKRRN---ERITILVATSGDTGSAAIEGFRGKPNV 157 (460)
T ss_pred cceEEeC-------CCcEEeeeeeCCCcchHHhHHHHHHHHHHHHHHhcC---CCeEEEEcCCCcHHHHHHHHHhCcCCC
Confidence 6776654 267999999999999999999876 566655411 2368999999999999 4888899999
Q ss_pred cEEEEeCCC-CCHHHHHHHHHcCC---EEEEeCCCCChHHHHHHHHHHHHhC-----CCeEEcCCCCCCccHHHHHHhHH
Q 028618 95 RLIITMPAS-MSLERRIILRAFGA---ELVLTDPAKGMKGAVQKAEEILAKT-----PNAYMLQQFENPANPKIHYETTG 165 (206)
Q Consensus 95 ~~~ivvp~~-~~~~~~~~~~~~Ga---~v~~~~~~~~~~~~~~~a~~~~~~~-----~~~~~~~~~~~~~~~~~g~~t~~ 165 (206)
+|+|++|.+ +++.++.+|..+|+ +++.++++ +++|...++++.++. .+++-.|. -|+.. +.++.+.+
T Consensus 158 ~v~Vl~P~g~vs~~Q~~Qm~t~g~~Nv~vi~V~G~--fDd~q~~vk~~~~d~~~~~~~~l~saNS-iN~~R-i~~Q~~yy 233 (460)
T cd01560 158 DVVVLYPKGGVSPIQELQMTTLPADNVHVVAVEGD--FDDCQSLVKALFADEDFNKKLKLSSANS-INWAR-ILAQIVYY 233 (460)
T ss_pred EEEEEEcCCCCCHHHHHHHHhhCCCceEEEEEcCC--HHHHHHHHHHHhcChhhHhcceEEEEec-cCHHH-HHHHHHHH
Confidence 999999996 99999999999996 88888887 889999988876652 13444444 46666 67999999
Q ss_pred HHHHhhhCC----CCCEEEEccCcchHHHHHHHHHHhcCC
Q 028618 166 PELWKGSGG----RIDALVSGIGTGGTITGAGKFLKEKNP 201 (206)
Q Consensus 166 ~Ei~~q~~~----~~d~vv~~vG~Gg~~aGi~~~~k~~~p 201 (206)
.|+++|+.+ .||.|+||+|+||.+.|.+.+.+.-.|
T Consensus 234 f~a~~ql~~~~~~~p~~~vVPtGnfgni~a~~~Ak~mGlp 273 (460)
T cd01560 234 FYAYLQLLKRGEGEKVEFSVPTGNFGNILAGYYAKKMGLP 273 (460)
T ss_pred HHHHHHhccccCCCCCEEEEECCcHHHHHHHHHHHHcCCC
Confidence 999999964 589999999999999999998664334
No 83
>PRK09225 threonine synthase; Validated
Probab=99.91 E-value=2.6e-23 Score=183.04 Aligned_cols=165 Identities=15% Similarity=0.093 Sum_probs=135.6
Q ss_pred CCcceecccccCCCCceEEEEeCCCCCCCChhhHHHHH---HHHHHHHcCCCCCCCeEEEeeCCCchHHHH-HHHHHHCC
Q 028618 18 NTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYS---MISDAEAKGLITPGESVLIEPTSGNTGIGL-AFMAAAKQ 93 (206)
Q Consensus 18 ~TPl~~~~~l~~~~g~~i~~K~E~~~ptGS~K~R~a~~---~~~~a~~~g~~~~~~~~vv~aSsGN~g~al-A~~a~~~g 93 (206)
.+||.++. .++|+.--.++||||||||++.. ++..+.+ +. ...|+++||||+|.|+ |.++.+.|
T Consensus 88 ~~pl~~l~-------~~~~~lELfhGPT~sFKD~a~~~l~~~l~~a~~-~~----~~~Il~ATSGdtG~Aa~aaf~~~~g 155 (462)
T PRK09225 88 IAPLVQLD-------DNLYVLELFHGPTLAFKDFALQFLAQLLEYVLK-GE----KITILGATSGDTGSAAAEAFRGKPN 155 (462)
T ss_pred ccceEEeC-------CCceeHhhccCCccchhhhHHHHHHHHHHHHHh-CC----CcEEEEcCCCcHHHHHHHHHhCcCC
Confidence 37777653 25788777789999999999988 7777776 42 2689999999999998 78888999
Q ss_pred CcEEEEeCCC-CCHHHHHHHHHc-CCEE--EEeCCCCChHHHHHHHHHHHHhC-----CCeEEcCCCCCCccHHHHHHhH
Q 028618 94 YRLIITMPAS-MSLERRIILRAF-GAEL--VLTDPAKGMKGAVQKAEEILAKT-----PNAYMLQQFENPANPKIHYETT 164 (206)
Q Consensus 94 ~~~~ivvp~~-~~~~~~~~~~~~-Ga~v--~~~~~~~~~~~~~~~a~~~~~~~-----~~~~~~~~~~~~~~~~~g~~t~ 164 (206)
++|+|++|++ +++.++.+|..+ |++| +.++++ +++|...++++.++. .+++-.|. -|+.. +.|+.++
T Consensus 156 i~~~V~~P~g~vs~~q~~Qm~t~~g~nv~vi~V~G~--fDD~q~~vk~~~~d~~~~~~~~l~saNS-iN~~R-i~gQ~~y 231 (462)
T PRK09225 156 VRVVILYPKGKVSPVQEKQMTTLQGDNIHVVAVEGN--FDDCQALVKAAFNDEELKEKLKLSSANS-INIGR-LLAQIVY 231 (462)
T ss_pred CEEEEEEcCCCCCHHHHHHHHhhcCCCeEEEEeCCC--HHHHHHHHHHHhhchhhhhcCceEEEec-cCHHH-HHHHHHH
Confidence 9999999996 999999999999 9977 666766 889999988876651 14555555 37776 6799999
Q ss_pred HHHHHhhhCC---CCCEEEEccCcchHHHHHHHHHHh
Q 028618 165 GPELWKGSGG---RIDALVSGIGTGGTITGAGKFLKE 198 (206)
Q Consensus 165 ~~Ei~~q~~~---~~d~vv~~vG~Gg~~aGi~~~~k~ 198 (206)
+.|+++|+.+ .||.|++|+|+||.+.|.+.+.+.
T Consensus 232 yfea~~ql~~~~~~p~~~vVPtGnfgni~a~~~Ak~m 268 (462)
T PRK09225 232 YFYAYLQLGIEAGEKVNFSVPSGNFGNILAGYYAKKM 268 (462)
T ss_pred HHHHHHHhccccCCCCEEEEECCcHHHHHHHHHHHHc
Confidence 9999999964 389999999999999999998443
No 84
>COG1350 Predicted alternative tryptophan synthase beta-subunit (paralog of TrpB) [General function prediction only]
Probab=99.91 E-value=7.3e-24 Score=174.56 Aligned_cols=181 Identities=23% Similarity=0.202 Sum_probs=144.1
Q ss_pred hhccc-cCCcceecccccCCCC--ceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCCchHHHHHHH
Q 028618 12 VTELI-GNTPLVYLNNIVNGCV--ARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFM 88 (206)
Q Consensus 12 i~~~~-~~TPl~~~~~l~~~~g--~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~aSsGN~g~alA~~ 88 (206)
++..+ .+|||+++++|.+.++ ++||+|.|+..|+||+|...|......++.+|. ++.+.+...|..|.|++++
T Consensus 71 ~Y~~~gRPTPL~RA~~LE~~L~tparIYyK~Eg~tptGSHKiNTAlAqaYyak~eg~----~rl~TETGAGQWGsAlslA 146 (432)
T COG1350 71 AYLQIGRPTPLIRAKNLEEALGTPARIYYKYEGVTPTGSHKINTALAQAYYAKKEGA----KRLTTETGAGQWGSALSLA 146 (432)
T ss_pred HHHHhCCCCchhhhhhHHHHhCCCcEEEEEecccCCCCCCCcchHHHHHHHHHhcCc----eeeecccCCchHHHHHHHH
Confidence 34455 6899999999988776 699999999999999999999999999999997 2344455669999999999
Q ss_pred HHHCCCcEEEEeCC---CCCHHHHHHHHHcCCEEEEeCCCCCh----------------HHHHHHHHHHHHhCCCeEEcC
Q 028618 89 AAAKQYRLIITMPA---SMSLERRIILRAFGAELVLTDPAKGM----------------KGAVQKAEEILAKTPNAYMLQ 149 (206)
Q Consensus 89 a~~~g~~~~ivvp~---~~~~~~~~~~~~~Ga~v~~~~~~~~~----------------~~~~~~a~~~~~~~~~~~~~~ 149 (206)
|+.+|++|+|||-. ...+.++.+|+.+||+|+..+.+... -=++..|.+.+-++++..|..
T Consensus 147 ~alf~lk~~V~Mvr~Sy~qKpyRk~lM~~yGa~V~pSPS~~Te~Grk~l~e~p~hPGSLGIAISEAiE~al~~~~~kY~l 226 (432)
T COG1350 147 AALFGLKATVFMVRVSYYQKPYRKYLMELYGAEVVPSPSELTEFGRKILKEDPDHPGSLGIAISEAIEYALKNENTKYSL 226 (432)
T ss_pred HHHhCceeEEEEEehhhhcchHHHHHHHHhCCeecCCCcchhHHHHHHHhcCCCCCchhHHHHHHHHHHHHhCCCceecc
Confidence 99999999999966 35788899999999999999876421 114666667766665555543
Q ss_pred CCCCCccHHHHHHhHHHHHHhh---hCCCCCEEEEccCcchHHHHHHHHHH
Q 028618 150 QFENPANPKIHYETTGPELWKG---SGGRIDALVSGIGTGGTITGAGKFLK 197 (206)
Q Consensus 150 ~~~~~~~~~~g~~t~~~Ei~~q---~~~~~d~vv~~vG~Gg~~aGi~~~~k 197 (206)
..--.. ...|+..+|.|..+| ++..||++|.|||+|++++|+..-|-
T Consensus 227 GSVlnh-vllhQTViGlEakkQle~~~e~PDv~igcvGGGSNfag~~yPfi 276 (432)
T COG1350 227 GSVLNH-VLLHQTVIGLEAKKQLEQAGEDPDVIIGCVGGGSNFAGLTYPFI 276 (432)
T ss_pred hhHHHH-HHHHHHHHhHHHHHHHHhcCCCCCEEEEeccCCCccccccchhh
Confidence 322222 256999999999555 45679999999999999999986553
No 85
>KOG1395 consensus Tryptophan synthase beta chain [Amino acid transport and metabolism]
Probab=99.90 E-value=3.7e-23 Score=171.78 Aligned_cols=183 Identities=19% Similarity=0.177 Sum_probs=137.7
Q ss_pred hhcc-ccCCcceecccccCCC--CceEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCCchHHHHHHH
Q 028618 12 VTEL-IGNTPLVYLNNIVNGC--VARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFM 88 (206)
Q Consensus 12 i~~~-~~~TPl~~~~~l~~~~--g~~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~aSsGN~g~alA~~ 88 (206)
|+.+ ..+|||+++++|.+.+ |.+||+|+|++||+||+|...|...+..+++.|+ +..|.+...|.||.|+|.+
T Consensus 115 iy~y~gRpspL~~AkRLte~~q~ga~IylKrEdlnh~GsHKiNnav~QallakrlGk----knviaETGAGQhGvatA~a 190 (477)
T KOG1395|consen 115 IYKYLGRPSPLIRAKRLTEHCQTGARIYLKREDLNHTGSHKINNAVAQALLAKRLGK----KNVIAETGAGQHGVATATA 190 (477)
T ss_pred HHHHcCCCchhHHHHHHHHHhCCCCEEEEEecCCCccccCCcccHHHHHHHHHHhcc----cceeeccCCCccchHHHHH
Confidence 4433 4679999999998866 5799999999999999999999999999999998 3567777889999999999
Q ss_pred HHHCCCcEEEEeCCC---CCHHHHHHHHHcCCEEEEeCCCC-ChHHHHHHHH-HHHHhCCCeEEcCCCC-----CCccHH
Q 028618 89 AAAKQYRLIITMPAS---MSLERRIILRAFGAELVLTDPAK-GMKGAVQKAE-EILAKTPNAYMLQQFE-----NPANPK 158 (206)
Q Consensus 89 a~~~g~~~~ivvp~~---~~~~~~~~~~~~Ga~v~~~~~~~-~~~~~~~~a~-~~~~~~~~~~~~~~~~-----~~~~~~ 158 (206)
|+++|++|+|+|-.. ..+.++-+|+.+||+|+.+.... ..+++-..+. .+.....-.+|+-... -|....
T Consensus 191 ~a~FGl~C~v~mgAed~~rqalnvfrmrllGAkV~pv~sGt~tLrda~sea~r~wvt~~ett~y~~gs~~gphp~pt~vr 270 (477)
T KOG1395|consen 191 CAKFGLDCTVYMGAEDYRRQALNVFRMRLLGAKVHPVTSGTRTLRDATSEAGRLWVTNSETTHYAAGSAIGPHPYPTVVR 270 (477)
T ss_pred HHHhCCceEEEechhHHHHHHHHHHHHHHhCceEeecCCCceehhcccchhhhhhhhhhheeeeeecccCCCCCcHHHHH
Confidence 999999999999653 35677889999999999997532 2344433332 2333332344432222 122222
Q ss_pred HHHHhHHHHHHhhh----CCCCCEEEEccCcchHHHHHHHHHHh
Q 028618 159 IHYETTGPELWKGS----GGRIDALVSGIGTGGTITGAGKFLKE 198 (206)
Q Consensus 159 ~g~~t~~~Ei~~q~----~~~~d~vv~~vG~Gg~~aGi~~~~k~ 198 (206)
.-+.+++.|-..|. +..||.||.|+|+|++.+|+..-|..
T Consensus 271 ~fhsvIg~Et~~Q~me~~g~~PD~vvaCvGGGSN~~Glf~pF~~ 314 (477)
T KOG1395|consen 271 TFHSVIGKETKIQQMEKFGKLPDAVVACVGGGSNSAGLFSPFIR 314 (477)
T ss_pred HHHHHHhHHHHHHHHHHhCCCCCeEEEeccCCCccccccchhhc
Confidence 24667777765553 45699999999999999999887764
No 86
>COG3048 DsdA D-serine dehydratase [Amino acid transport and metabolism]
Probab=99.85 E-value=1.2e-20 Score=154.44 Aligned_cols=190 Identities=22% Similarity=0.254 Sum_probs=158.9
Q ss_pred hccccCCcceecccccC--------CCCceEEEEeCCCCCC-CChhhHHHHHHHHH-----HHHcCCCCCCCe-------
Q 028618 13 TELIGNTPLVYLNNIVN--------GCVARIAAKLEMMEPC-SSVKDRIGYSMISD-----AEAKGLITPGES------- 71 (206)
Q Consensus 13 ~~~~~~TPl~~~~~l~~--------~~g~~i~~K~E~~~pt-GS~K~R~a~~~~~~-----a~~~g~~~~~~~------- 71 (206)
...+.++||++++.+.+ ...-++|+|+++.-|. ||+|.|+..|-+.. |.+.|.+...++
T Consensus 73 ~~GiIES~lv~i~~mq~~Le~~Y~~~i~G~llLK~DshLpIsGSIKARGGIYEVL~hAE~LAle~Gll~~~DDYs~L~~~ 152 (443)
T COG3048 73 TGGIIESPLVEIPAMQKRLEKEYQQPIPGRLLLKKDSHLPISGSIKARGGIYEVLKHAEKLALEAGLLTLEDDYSILLSE 152 (443)
T ss_pred cCCeeccchhhhHHHHHHHHHHhcCCCCcceeeeccCCCCcccceeccccHHHHHHHHHHHHHhcCcccccchHHHhhcH
Confidence 34677899999876653 2234899999999985 99999998886642 457776544322
Q ss_pred ---------EEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhC
Q 028618 72 ---------VLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKT 142 (206)
Q Consensus 72 ---------~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~ 142 (206)
.|...|+||.|++...+++.+|+++++.|+.++..||+++++..|.+|+....+ |..+++.-++.++.+
T Consensus 153 ~f~~FFs~ysIaVGSTGNLGlSIGI~sA~lGF~vtVHMSADAr~WKKd~LRs~gV~ViEYe~D--Y~~AVeeGRk~a~~D 230 (443)
T COG3048 153 EFKDFFSRYSIAVGSTGNLGLSIGIMSAALGFKVTVHMSADARAWKKDKLRSHGVTVVEYEQD--YGVAVEEGRKEAESD 230 (443)
T ss_pred HHHHHHHhheEeecccCccceehhhhhhhhcceEEEEecchHHHHHHHHHHhcCceEEEecch--hhHHHHHhhhhhccC
Confidence 688899999999999999999999999999999999999999999999999988 668999999999999
Q ss_pred CCeEEcCCCCCCccHHHHHHhHHHHHHhhhC--------CCCCEEEEccCcchHHHHHHHHHHhcC-CCCeE
Q 028618 143 PNAYMLQQFENPANPKIHYETTGPELWKGSG--------GRIDALVSGIGTGGTITGAGKFLKEKN-PNIKV 205 (206)
Q Consensus 143 ~~~~~~~~~~~~~~~~~g~~t~~~Ei~~q~~--------~~~d~vv~~vG~Gg~~aGi~~~~k~~~-p~~~v 205 (206)
|.+||++.-++... ..||...+..+-.|++ ..|-.|.+|+|.||.-.|++.++|..+ .++.+
T Consensus 231 P~c~FiDDE~S~~L-FLGYaVAa~Rlk~Q~d~~gi~vd~ehPLfVylPCGVGGgPGGVafGLKl~fgd~Vhc 301 (443)
T COG3048 231 PNCFFIDDENSRTL-FLGYAVAAQRLKKQFDEQGIVVDAEHPLFVYLPCGVGGGPGGVAFGLKLAFGDHVHC 301 (443)
T ss_pred CceEEecccchhhh-hhhHHHHHHHHHHHHHhcCceecCCCceEEEeecCCCCCcchhhhhhHhhhcCceEE
Confidence 99999988555544 6799999999988874 247799999999999999999999876 34544
No 87
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=94.97 E-value=0.27 Score=37.98 Aligned_cols=99 Identities=10% Similarity=0.074 Sum_probs=60.6
Q ss_pred HHHHHHHHHHCCCcEE-EEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHH
Q 028618 82 GIGLAFMAAAKQYRLI-ITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIH 160 (206)
Q Consensus 82 g~alA~~a~~~g~~~~-ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g 160 (206)
|..+.++++.+|.++- -+...+.-..-.+.+...|..|.+++++. ....+.+..+.+++|+.-.+.-++-+.. ..-
T Consensus 13 G~~i~~~~~~~g~~~~~rv~g~dl~~~l~~~~~~~~~~ifllG~~~--~~~~~~~~~l~~~yP~l~ivg~~~g~f~-~~~ 89 (172)
T PF03808_consen 13 GMPIVWAARLLGRPLPERVTGSDLFPDLLRRAEQRGKRIFLLGGSE--EVLEKAAANLRRRYPGLRIVGYHHGYFD-EEE 89 (172)
T ss_pred CHHHHHHHHHcCCCCCcccCHHHHHHHHHHHHHHcCCeEEEEeCCH--HHHHHHHHHHHHHCCCeEEEEecCCCCC-hhh
Confidence 5788999999998873 22222334455666677889999999873 3455556677777777655432222122 112
Q ss_pred HHhHHHHHHhhhC-CCCCEEEEccCcch
Q 028618 161 YETTGPELWKGSG-GRIDALVSGIGTGG 187 (206)
Q Consensus 161 ~~t~~~Ei~~q~~-~~~d~vv~~vG~Gg 187 (206)
. .+|.+++. ..||.|+++.|+--
T Consensus 90 ~----~~i~~~I~~~~pdiv~vglG~Pk 113 (172)
T PF03808_consen 90 E----EAIINRINASGPDIVFVGLGAPK 113 (172)
T ss_pred H----HHHHHHHHHcCCCEEEEECCCCH
Confidence 2 23444432 35899999998754
No 88
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=93.71 E-value=0.94 Score=34.92 Aligned_cols=99 Identities=18% Similarity=0.170 Sum_probs=58.8
Q ss_pred HHHHHHHHHHCCCcEEEEeCCC-CCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHH
Q 028618 82 GIGLAFMAAAKQYRLIITMPAS-MSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIH 160 (206)
Q Consensus 82 g~alA~~a~~~g~~~~ivvp~~-~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g 160 (206)
|..+.++++.+|.+..--++.. .-..-.+.+...+..|.+++.+. +...+.++.+.+++|+...+...+.+... ..
T Consensus 11 G~~l~~~~~~~~~~~~~r~~g~dl~~~ll~~~~~~~~~v~llG~~~--~~~~~~~~~l~~~yp~l~i~g~~~g~~~~-~~ 87 (171)
T cd06533 11 GIGVVWAARLLGGPLPERVTGSDLMPALLELAAQKGLRVFLLGAKP--EVLEKAAERLRARYPGLKIVGYHHGYFGP-EE 87 (171)
T ss_pred cHHHHHHHHHcCCCCCcccCcHHHHHHHHHHHHHcCCeEEEECCCH--HHHHHHHHHHHHHCCCcEEEEecCCCCCh-hh
Confidence 5788999999998833333332 22344555666789999999873 34444455677778876544322222221 11
Q ss_pred HHhHHHHHHhhhC-CCCCEEEEccCcch
Q 028618 161 YETTGPELWKGSG-GRIDALVSGIGTGG 187 (206)
Q Consensus 161 ~~t~~~Ei~~q~~-~~~d~vv~~vG~Gg 187 (206)
. .++.+++. ..||.|+++.|+--
T Consensus 88 ~----~~i~~~I~~~~pdiv~vglG~Pk 111 (171)
T cd06533 88 E----EEIIERINASGADILFVGLGAPK 111 (171)
T ss_pred H----HHHHHHHHHcCCCEEEEECCCCH
Confidence 1 12444442 35999999999753
No 89
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=91.77 E-value=1.3 Score=31.81 Aligned_cols=41 Identities=24% Similarity=0.250 Sum_probs=28.9
Q ss_pred HHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCC
Q 028618 82 GIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPA 125 (206)
Q Consensus 82 g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~ 125 (206)
|+.....|+.+|.+++++.+ .+.|++.++.+|++.+....+
T Consensus 3 G~~a~q~ak~~G~~vi~~~~---~~~k~~~~~~~Ga~~~~~~~~ 43 (130)
T PF00107_consen 3 GLMAIQLAKAMGAKVIATDR---SEEKLELAKELGADHVIDYSD 43 (130)
T ss_dssp HHHHHHHHHHTTSEEEEEES---SHHHHHHHHHTTESEEEETTT
T ss_pred HHHHHHHHHHcCCEEEEEEC---CHHHHHHHHhhcccccccccc
Confidence 56677778888865555543 557788888888877766654
No 90
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=91.72 E-value=1.4 Score=37.48 Aligned_cols=54 Identities=15% Similarity=0.189 Sum_probs=42.1
Q ss_pred CCCCCeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEE
Q 028618 66 ITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 120 (206)
Q Consensus 66 ~~~~~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~ 120 (206)
..++++.+|. ..|..|...+..++..|.+++++.+...++.|++.++.+|++.+
T Consensus 170 ~~~g~~vlI~-G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~~v 223 (355)
T cd08230 170 TWNPRRALVL-GAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGATYV 223 (355)
T ss_pred cCCCCEEEEE-CCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEEe
Confidence 3455566665 46999999999999999987766665557788999999999874
No 91
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=91.55 E-value=3.5 Score=33.12 Aligned_cols=55 Identities=31% Similarity=0.331 Sum_probs=36.9
Q ss_pred HHHcCCCCCCCeEEEee-CCC---chHHHHHHHHHHCCCcEEEEeCCCCC-HHHHHHHHHcCC
Q 028618 60 AEAKGLITPGESVLIEP-TSG---NTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGA 117 (206)
Q Consensus 60 a~~~g~~~~~~~~vv~a-SsG---N~g~alA~~a~~~g~~~~ivvp~~~~-~~~~~~~~~~Ga 117 (206)
|..-|.-. +.+|++ |.| .+.+|||.+|++-|=+.+.++|+... ..-.+.|..+|.
T Consensus 35 AlAAG~nA---kliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~ 94 (218)
T PF07279_consen 35 ALAAGWNA---KLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGL 94 (218)
T ss_pred HHhccccc---eEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccc
Confidence 45555422 445555 554 36899999999999999999999654 344445555553
No 92
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=91.53 E-value=2.5 Score=32.88 Aligned_cols=95 Identities=12% Similarity=0.062 Sum_probs=54.3
Q ss_pred HHHHHHHHHHCCCcEEEEeCCC-CCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEc--CCCCCCccHH
Q 028618 82 GIGLAFMAAAKQYRLIITMPAS-MSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYML--QQFENPANPK 158 (206)
Q Consensus 82 g~alA~~a~~~g~~~~ivvp~~-~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~~~ 158 (206)
|..+.++++.+|.+..--++.. .-..-.+.....|..|.+++... ....+.++.+.+++|+.-.. ++|-++..
T Consensus 13 G~~iv~~~r~~g~~~~~Rv~G~dl~~~l~~~~~~~~~~vfllG~~~--~v~~~~~~~l~~~yP~l~i~g~~g~f~~~~-- 88 (177)
T TIGR00696 13 GIGVVWGLKLLGYPQQSRVAGPDLMEELCQRAGKEKLPIFLYGGKP--DVLQQLKVKLIKEYPKLKIVGAFGPLEPEE-- 88 (177)
T ss_pred cHHHHHHHHHcCCCCCCccChHHHHHHHHHHHHHcCCeEEEECCCH--HHHHHHHHHHHHHCCCCEEEEECCCCChHH--
Confidence 4678889999986642222221 12233444556788999998873 34455566677777765433 22222211
Q ss_pred HHHHhHHHHHHhhhC-CCCCEEEEccCcc
Q 028618 159 IHYETTGPELWKGSG-GRIDALVSGIGTG 186 (206)
Q Consensus 159 ~g~~t~~~Ei~~q~~-~~~d~vv~~vG~G 186 (206)
. .++.+++. ..+|.|+|+.|+=
T Consensus 89 --~----~~i~~~I~~s~~dil~VglG~P 111 (177)
T TIGR00696 89 --R----KAALAKIARSGAGIVFVGLGCP 111 (177)
T ss_pred --H----HHHHHHHHHcCCCEEEEEcCCc
Confidence 1 23444442 2589999988853
No 93
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=90.88 E-value=3.9 Score=34.79 Aligned_cols=57 Identities=21% Similarity=0.344 Sum_probs=40.4
Q ss_pred HcCCCCCCCeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEEEe
Q 028618 62 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLT 122 (206)
Q Consensus 62 ~~g~~~~~~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~ 122 (206)
.+..+.++++.+|... |..|.+++..|+.+|.+++++ +.++.+++.++.+|++.++.
T Consensus 160 ~~~~~~~g~~VlV~G~-G~vG~~a~~~a~~~G~~vi~~---~~~~~~~~~~~~~Ga~~~i~ 216 (349)
T TIGR03201 160 VQAGLKKGDLVIVIGA-GGVGGYMVQTAKAMGAAVVAI---DIDPEKLEMMKGFGADLTLN 216 (349)
T ss_pred HhcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCeEEEE---cCCHHHHHHHHHhCCceEec
Confidence 3445677766655555 999999999999999975443 33556777778888865543
No 94
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=90.84 E-value=1.4 Score=35.06 Aligned_cols=52 Identities=25% Similarity=0.326 Sum_probs=42.2
Q ss_pred EEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCC
Q 028618 73 LIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPA 125 (206)
Q Consensus 73 vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~ 125 (206)
+|++.+|+.|..++.+....+.++++++... +....+.++..|++++..+-+
T Consensus 2 ~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~-~~~~~~~l~~~g~~vv~~d~~ 53 (233)
T PF05368_consen 2 LVTGATGNQGRSVVRALLSAGFSVRALVRDP-SSDRAQQLQALGAEVVEADYD 53 (233)
T ss_dssp EEETTTSHHHHHHHHHHHHTTGCEEEEESSS-HHHHHHHHHHTTTEEEES-TT
T ss_pred EEECCccHHHHHHHHHHHhCCCCcEEEEecc-chhhhhhhhcccceEeecccC
Confidence 5778899999999999999999999999876 444566778899998866543
No 95
>PF00764 Arginosuc_synth: Arginosuccinate synthase; InterPro: IPR001518 Argininosuccinate synthase (6.3.4.5 from EC) (AS) is a urea cycle enzyme that catalyzes the penultimate step in arginine biosynthesis: the ATP-dependent ligation of citrulline to aspartate to form argininosuccinate, AMP and pyrophosphate [, ]. In humans, a defect in the AS gene causes citrullinemia, a genetic disease characterised by severe vomiting spells and mental retardation. AS is a homotetrameric enzyme of chains of about 400 amino-acid residues. An arginine seems to be important for the enzyme's catalytic mechanism. The sequences of AS from various prokaryotes, archaebacteria and eukaryotes show significant similarity.; GO: 0004055 argininosuccinate synthase activity, 0005524 ATP binding, 0006526 arginine biosynthetic process; PDB: 1K97_A 1KP2_A 1K92_A 1KP3_A 2NZ2_A 1VL2_A 1J1Z_D 1KOR_C 1J20_D 1KH2_C ....
Probab=90.79 E-value=2.6 Score=36.95 Aligned_cols=125 Identities=17% Similarity=0.197 Sum_probs=72.5
Q ss_pred EeeCCC-chHHHHHHHHHHCCCcEEEEeCC-CCC----HHHHHHHHHcCC-EEEEeCCCCChHHHHHHHHHHHHhCCCeE
Q 028618 74 IEPTSG-NTGIGLAFMAAAKQYRLIITMPA-SMS----LERRIILRAFGA-ELVLTDPAKGMKGAVQKAEEILAKTPNAY 146 (206)
Q Consensus 74 v~aSsG-N~g~alA~~a~~~g~~~~ivvp~-~~~----~~~~~~~~~~Ga-~v~~~~~~~~~~~~~~~a~~~~~~~~~~~ 146 (206)
+..|+| .+...+.|...+.+++++.|.-+ ..+ ....+....+|| +++.++....+ +.+.+....+. +..
T Consensus 2 LAySGGLDTS~~l~~L~e~~~~~Via~~aDlGq~~~d~~~i~~kA~~~Ga~~~~vvD~r~ef--~~~~i~~aI~a--nA~ 77 (388)
T PF00764_consen 2 LAYSGGLDTSVILKWLKEEGGYEVIAVTADLGQPDEDLEAIEEKALKLGASKHIVVDARDEF--AEDYIFPAIKA--NAL 77 (388)
T ss_dssp EE--SSHHHHHHHHHHHHTTTEEEEEEEEESSST-S-HHHHHHHHHHHT-SEEEEEE-HHHH--HHHTHHHHHHT--T--
T ss_pred eeeCCChHHHHHHHHHHhhcCceEEEEEEECCCcHHHHHHHHHHHHhcCCceeeecchHHHH--HHHHHHHHHHH--HHH
Confidence 445666 56677788888888999998743 222 344556788999 99999864211 11222223232 233
Q ss_pred EcCCC---CCCccHHHHHHhHHHHHHhhhCCCCCEEEE-ccCcchHHHHHHHHHHhcCCCCeEC
Q 028618 147 MLQQF---ENPANPKIHYETTGPELWKGSGGRIDALVS-GIGTGGTITGAGKFLKEKNPNIKVR 206 (206)
Q Consensus 147 ~~~~~---~~~~~~~~g~~t~~~Ei~~q~~~~~d~vv~-~vG~Gg~~aGi~~~~k~~~p~~~vi 206 (206)
|.+.| .....|. ...-..|+.++. ..++|.. ++|-|--..=.-.+++.+.|+.+||
T Consensus 78 Yeg~YpL~tsl~Rpl--Ia~~~v~~A~~~--ga~~vaHG~TgkGNDqvRFe~~~~al~P~l~vi 137 (388)
T PF00764_consen 78 YEGRYPLSTSLARPL--IAKKLVEVAREE--GADAVAHGCTGKGNDQVRFELSIRALAPELKVI 137 (388)
T ss_dssp BTTTB--CCCCHHHH--HHHHHHHHHHHH--T-SEEE----TTSSHHHHHHHHHHHHSTTSEEE
T ss_pred hCCCccccccchHHH--HHHHHHHHHHHc--CCeEEeccCCcCCCchhHHHHHHHHhCcCCcEe
Confidence 33322 2223333 233445667766 3688888 5688889999999999999999986
No 96
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=90.18 E-value=4.7 Score=33.52 Aligned_cols=59 Identities=20% Similarity=0.229 Sum_probs=43.9
Q ss_pred HcCCCCCCCeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeC
Q 028618 62 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTD 123 (206)
Q Consensus 62 ~~g~~~~~~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~ 123 (206)
+...+.+|+..+|.+.+|..|.++.-.|+.+|++++++. .++.+.+.++.+|++-++..
T Consensus 137 ~~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~---~s~~~~~~l~~~Ga~~vi~~ 195 (329)
T cd08294 137 EICKPKAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCA---GSDDKVAWLKELGFDAVFNY 195 (329)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEe---CCHHHHHHHHHcCCCEEEeC
Confidence 445567776777777789999999999999999865553 34567788888998655443
No 97
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=89.94 E-value=5.2 Score=34.11 Aligned_cols=57 Identities=26% Similarity=0.451 Sum_probs=44.5
Q ss_pred cCCCCCCCeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEEEe
Q 028618 63 KGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLT 122 (206)
Q Consensus 63 ~g~~~~~~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~ 122 (206)
...+++|++.+|.+.+|.-|..+.-.|+.+|..+++... +..+.+.++.+||+.+..
T Consensus 137 ~~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~---s~~k~~~~~~lGAd~vi~ 193 (326)
T COG0604 137 RAGLKPGETVLVHGAAGGVGSAAIQLAKALGATVVAVVS---SSEKLELLKELGADHVIN 193 (326)
T ss_pred hcCCCCCCEEEEecCCchHHHHHHHHHHHcCCcEEEEec---CHHHHHHHHhcCCCEEEc
Confidence 456777888999999999999999999999984444432 336666899999977765
No 98
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=89.29 E-value=7.5 Score=36.11 Aligned_cols=52 Identities=15% Similarity=0.252 Sum_probs=42.2
Q ss_pred eEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCC
Q 028618 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPA 125 (206)
Q Consensus 71 ~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~ 125 (206)
..++.+..|..|+.+|..-...|++++++ +..+.+.+.++.+|.+++.-+..
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvI---D~d~~~v~~~~~~g~~v~~GDat 452 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMANKMRITVL---ERDISAVNLMRKYGYKVYYGDAT 452 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhCCCCEEEE---ECCHHHHHHHHhCCCeEEEeeCC
Confidence 45888999999999999999999998777 33456777888899888776655
No 99
>KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion]
Probab=89.00 E-value=2.4 Score=35.78 Aligned_cols=89 Identities=22% Similarity=0.266 Sum_probs=60.7
Q ss_pred eEEEEeCCCCC-----CCChhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCC-HH
Q 028618 34 RIAAKLEMMEP-----CSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LE 107 (206)
Q Consensus 34 ~i~~K~E~~~p-----tGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~-~~ 107 (206)
+-++|.++.-| |-|.---.|+-|+.+-.+ +++|+..+=-++.+--|+++--.|+.+||+.+-++.+... ++
T Consensus 124 ~~Li~vd~~~pl~~AAT~~VNP~TAyrmL~dfv~---L~~GD~vIQNganS~VG~~ViQlaka~GiktinvVRdR~~iee 200 (354)
T KOG0025|consen 124 SDLIKVDKDIPLASAATLSVNPCTAYRMLKDFVQ---LNKGDSVIQNGANSGVGQAVIQLAKALGIKTINVVRDRPNIEE 200 (354)
T ss_pred cceEEcCCcCChhhhheeccCchHHHHHHHHHHh---cCCCCeeeecCcccHHHHHHHHHHHHhCcceEEEeecCccHHH
Confidence 45677776444 234444467778877665 4456432222333456778888999999999999988754 45
Q ss_pred HHHHHHHcCCEEEEeCCC
Q 028618 108 RRIILRAFGAELVLTDPA 125 (206)
Q Consensus 108 ~~~~~~~~Ga~v~~~~~~ 125 (206)
-.++++.+||+-++.+..
T Consensus 201 l~~~Lk~lGA~~ViTeee 218 (354)
T KOG0025|consen 201 LKKQLKSLGATEVITEEE 218 (354)
T ss_pred HHHHHHHcCCceEecHHH
Confidence 567889999998887654
No 100
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=88.84 E-value=7.7 Score=33.87 Aligned_cols=57 Identities=26% Similarity=0.338 Sum_probs=42.1
Q ss_pred HcCCCCCCCeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 028618 62 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 121 (206)
Q Consensus 62 ~~g~~~~~~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~ 121 (206)
+...+.++++.+| ..+|..|+.++..|+.+|.+.+++. +..+.+++..+.+|++.+.
T Consensus 179 ~~~~~~~g~~VlV-~G~G~iG~~aiqlAk~~Ga~~vi~~--d~~~~r~~~a~~~Ga~~v~ 235 (393)
T TIGR02819 179 VTAGVGPGSTVYI-AGAGPVGLAAAASAQLLGAAVVIVG--DLNPARLAQARSFGCETVD 235 (393)
T ss_pred HhcCCCCCCEEEE-ECCCHHHHHHHHHHHHcCCceEEEe--CCCHHHHHHHHHcCCeEEe
Confidence 3345677766556 6779999999999999999876643 2246788888899997543
No 101
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=88.56 E-value=8.9 Score=35.78 Aligned_cols=52 Identities=15% Similarity=0.206 Sum_probs=43.4
Q ss_pred eEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCC
Q 028618 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPA 125 (206)
Q Consensus 71 ~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~ 125 (206)
..++.+..|..|+.+|..-+..|++++++ +..+.+.+.++.+|.+++.-|.+
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvI---D~d~~~v~~~~~~g~~v~~GDat 452 (621)
T PRK03562 401 PRVIIAGFGRFGQIVGRLLLSSGVKMTVL---DHDPDHIETLRKFGMKVFYGDAT 452 (621)
T ss_pred CcEEEEecChHHHHHHHHHHhCCCCEEEE---ECCHHHHHHHHhcCCeEEEEeCC
Confidence 46888999999999999999999998887 44566788888899888776665
No 102
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=88.25 E-value=4.3 Score=33.36 Aligned_cols=53 Identities=28% Similarity=0.312 Sum_probs=39.3
Q ss_pred CCCCCeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 028618 66 ITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 121 (206)
Q Consensus 66 ~~~~~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~ 121 (206)
..+++..+|. ..|..|..++..|+.+|.+.++++ +.++.|.+..+.+|++.+.
T Consensus 118 ~~~g~~VlV~-G~G~vG~~~~~~ak~~G~~~Vi~~--~~~~~r~~~a~~~Ga~~~i 170 (280)
T TIGR03366 118 DLKGRRVLVV-GAGMLGLTAAAAAAAAGAARVVAA--DPSPDRRELALSFGATALA 170 (280)
T ss_pred CCCCCEEEEE-CCCHHHHHHHHHHHHcCCCEEEEE--CCCHHHHHHHHHcCCcEec
Confidence 3466555555 568899999999999999845554 4466788888999997654
No 103
>PRK08862 short chain dehydrogenase; Provisional
Probab=88.14 E-value=10 Score=30.20 Aligned_cols=54 Identities=13% Similarity=0.044 Sum_probs=36.0
Q ss_pred CeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCC-HHHHHHHHHcCCEEEEeC
Q 028618 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLTD 123 (206)
Q Consensus 70 ~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~-~~~~~~~~~~Ga~v~~~~ 123 (206)
+..+|++.++.-|.++|......|.+++++-..... ....+.++..|.+++.+.
T Consensus 6 k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~~~~~~~~~~ 60 (227)
T PRK08862 6 SIILITSAGSVLGRTISCHFARLGATLILCDQDQSALKDTYEQCSALTDNVYSFQ 60 (227)
T ss_pred eEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCCeEEEE
Confidence 367888888889999999999999987766443221 112334556676665543
No 104
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=87.55 E-value=5.3 Score=34.19 Aligned_cols=61 Identities=21% Similarity=0.309 Sum_probs=46.1
Q ss_pred HHHcCCCCCCCeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 028618 60 AEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 124 (206)
Q Consensus 60 a~~~g~~~~~~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~ 124 (206)
+++.| +.||+..-|..-+| .|.----+|+.+|++++++-.. +..|.+.++.+||+......
T Consensus 174 Lk~~g-~~pG~~vgI~GlGG-LGh~aVq~AKAMG~rV~vis~~--~~kkeea~~~LGAd~fv~~~ 234 (360)
T KOG0023|consen 174 LKRSG-LGPGKWVGIVGLGG-LGHMAVQYAKAMGMRVTVISTS--SKKKEEAIKSLGADVFVDST 234 (360)
T ss_pred hHHcC-CCCCcEEEEecCcc-cchHHHHHHHHhCcEEEEEeCC--chhHHHHHHhcCcceeEEec
Confidence 34555 45887666666666 8877778899999999999433 44677889999999988866
No 105
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=87.49 E-value=9 Score=34.90 Aligned_cols=50 Identities=16% Similarity=0.102 Sum_probs=41.2
Q ss_pred eEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeC
Q 028618 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTD 123 (206)
Q Consensus 71 ~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~ 123 (206)
..++....|..|++.+..|+.+|-+++++ +..+.++++.+.+|++.+.++
T Consensus 166 ~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~---D~~~~rle~aeslGA~~v~i~ 215 (509)
T PRK09424 166 AKVLVIGAGVAGLAAIGAAGSLGAIVRAF---DTRPEVAEQVESMGAEFLELD 215 (509)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEE---eCCHHHHHHHHHcCCeEEEec
Confidence 57888999999999999999999864444 557788999999999966554
No 106
>PRK08703 short chain dehydrogenase; Provisional
Probab=87.00 E-value=9.7 Score=30.15 Aligned_cols=32 Identities=22% Similarity=0.221 Sum_probs=26.4
Q ss_pred CeEEEeeCCCchHHHHHHHHHHCCCcEEEEeC
Q 028618 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMP 101 (206)
Q Consensus 70 ~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp 101 (206)
++.+|+..+|..|.++|......|.+++++.+
T Consensus 7 k~vlItG~sggiG~~la~~l~~~g~~V~~~~r 38 (239)
T PRK08703 7 KTILVTGASQGLGEQVAKAYAAAGATVILVAR 38 (239)
T ss_pred CEEEEECCCCcHHHHHHHHHHHcCCEEEEEeC
Confidence 36789999999999999999888887666544
No 107
>TIGR00670 asp_carb_tr aspartate carbamoyltransferase. Ornithine carbamoyltransferases are in the same superfamily and form an outgroup.
Probab=86.85 E-value=4.2 Score=34.42 Aligned_cols=46 Identities=22% Similarity=0.145 Sum_probs=37.2
Q ss_pred CchHHHHHHHHHHCCCcEEEEeCCCC--CHHHHHHHHHcCCEEEEeCC
Q 028618 79 GNTGIGLAFMAAAKQYRLIITMPASM--SLERRIILRAFGAELVLTDP 124 (206)
Q Consensus 79 GN~g~alA~~a~~~g~~~~ivvp~~~--~~~~~~~~~~~Ga~v~~~~~ 124 (206)
+|.++++..+++++|++++++.|+.. ++..++.++..|+++...+.
T Consensus 162 ~~v~~Sl~~~~a~~g~~v~~~~P~~~~~~~~~~~~~~~~G~~v~~~~d 209 (301)
T TIGR00670 162 GRTVHSLAEALTRFGVEVYLISPEELRMPKEILEELKAKGIKVRETES 209 (301)
T ss_pred CcHHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHcCCEEEEECC
Confidence 69999999999999999999999974 55556666677887766543
No 108
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=86.74 E-value=8.9 Score=30.27 Aligned_cols=68 Identities=19% Similarity=0.149 Sum_probs=45.0
Q ss_pred hHHHHHHHHHHHHc--CCCCCCCeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHH-HHcCCEEE
Q 028618 50 DRIGYSMISDAEAK--GLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIIL-RAFGAELV 120 (206)
Q Consensus 50 ~R~a~~~~~~a~~~--g~~~~~~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~-~~~Ga~v~ 120 (206)
.+|..+.+..+.+. +......++++.-..||.|..+|......|.+++++ . ..+.+.+.+ ..+|++.+
T Consensus 6 g~Gv~~~~~~~~~~~~~~~~l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~-D--~~~~~~~~~~~~~g~~~v 76 (200)
T cd01075 6 AYGVFLGMKAAAEHLLGTDSLEGKTVAVQGLGKVGYKLAEHLLEEGAKLIVA-D--INEEAVARAAELFGATVV 76 (200)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEE-c--CCHHHHHHHHHHcCCEEE
Confidence 47788888877655 222332356777788999999999999999988754 2 233444444 34476543
No 109
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=86.73 E-value=8 Score=32.47 Aligned_cols=57 Identities=28% Similarity=0.397 Sum_probs=42.7
Q ss_pred HHcCCCCCCCeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 028618 61 EAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 121 (206)
Q Consensus 61 ~~~g~~~~~~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~ 121 (206)
.+...+.+++..+|...+|..|.+++..|+.+|.+++++.+. . +++.++.+|++.+.
T Consensus 170 ~~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~g~~vi~~~~~---~-~~~~~~~~g~~~~~ 226 (350)
T cd08274 170 LERAGVGAGETVLVTGASGGVGSALVQLAKRRGAIVIAVAGA---A-KEEAVRALGADTVI 226 (350)
T ss_pred HhhcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCc---h-hhHHHHhcCCeEEE
Confidence 345556777777777778999999999999999996655432 2 66777889987544
No 110
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=86.70 E-value=6.8 Score=32.75 Aligned_cols=58 Identities=19% Similarity=0.298 Sum_probs=44.0
Q ss_pred HcCCCCCCCeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEEEe
Q 028618 62 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLT 122 (206)
Q Consensus 62 ~~g~~~~~~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~ 122 (206)
+.+.+.+|+..+|.+.+|-.|.+++..|+..|.++++..+ ++.+.+.++.+|++.++.
T Consensus 132 ~~~~~~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~---s~~~~~~~~~lGa~~vi~ 189 (325)
T TIGR02825 132 EICGVKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAG---SDEKVAYLKKLGFDVAFN 189 (325)
T ss_pred HHhCCCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCCEEEe
Confidence 4556777777777777899999999999999998665543 456778888899865544
No 111
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=86.50 E-value=6 Score=31.80 Aligned_cols=56 Identities=25% Similarity=0.315 Sum_probs=39.1
Q ss_pred CeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCC
Q 028618 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPA 125 (206)
Q Consensus 70 ~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~ 125 (206)
+..+|+..+|.-|.++|......|.+++++-.........+.+...|.++..+..|
T Consensus 9 k~vlVtGas~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D 64 (260)
T PRK12823 9 KVVVVTGAAQGIGRGVALRAAAEGARVVLVDRSELVHEVAAELRAAGGEALALTAD 64 (260)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCchHHHHHHHHHHhcCCeEEEEEEe
Confidence 36789999999999999999999998877654422223334455667776655433
No 112
>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions. The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....
Probab=86.23 E-value=2 Score=36.99 Aligned_cols=94 Identities=18% Similarity=0.168 Sum_probs=55.9
Q ss_pred eEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCC-CChHHHHHHHHHHHHhCCC-eEEc
Q 028618 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPA-KGMKGAVQKAEEILAKTPN-AYML 148 (206)
Q Consensus 71 ~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~-~~~~~~~~~a~~~~~~~~~-~~~~ 148 (206)
...+..+||..|+-+|+.+..++=.-.|++|.-+...-...+...|+++++++-+ .++.=..+..++...++.. .+.+
T Consensus 41 ~~~~~~~sgt~Al~~al~~l~~~~gdeVi~p~~t~~~~~~ai~~~G~~pv~~Di~~~~~~id~~~~~~~i~~~t~ai~~~ 120 (363)
T PF01041_consen 41 KYAVAVSSGTSALHLALRALGLGPGDEVIVPAYTFPATASAILWAGAEPVFVDIDPETLNIDPEALEKAITPKTKAILVV 120 (363)
T ss_dssp SEEEEESSHHHHHHHHHHHTTGGTTSEEEEESSS-THHHHHHHHTT-EEEEE-BETTTSSB-HHHHHHHHHTTEEEEEEE
T ss_pred CeEEEeCChhHHHHHHHHhcCCCcCceEecCCCcchHHHHHHHHhccEEEEEeccCCcCCcCHHHHHHHhccCccEEEEe
Confidence 4678889999998888888333333788889988888899999999999999865 2221112223333333323 3456
Q ss_pred CCCCCCccHHHHHHhHH
Q 028618 149 QQFENPANPKIHYETTG 165 (206)
Q Consensus 149 ~~~~~~~~~~~g~~t~~ 165 (206)
+.++++.. +.....++
T Consensus 121 h~~G~~~d-~~~i~~~~ 136 (363)
T PF01041_consen 121 HLFGNPAD-MDAIRAIA 136 (363)
T ss_dssp -GGGB----HHHHHHHH
T ss_pred cCCCCccc-HHHHHHHH
Confidence 77777765 44444443
No 113
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=86.19 E-value=11 Score=31.89 Aligned_cols=74 Identities=20% Similarity=0.166 Sum_probs=52.3
Q ss_pred CCeEEEeeCCCchHHHHHHHHHHCCCcEEEEe-CCCCCHHHHHHHHHcC-CEEEEeCCCCChHHHHHHHHHHHHhCC
Q 028618 69 GESVLIEPTSGNTGIGLAFMAAAKQYRLIITM-PASMSLERRIILRAFG-AELVLTDPAKGMKGAVQKAEEILAKTP 143 (206)
Q Consensus 69 ~~~~vv~aSsGN~g~alA~~a~~~g~~~~ivv-p~~~~~~~~~~~~~~G-a~v~~~~~~~~~~~~~~~a~~~~~~~~ 143 (206)
|+..+||.+++-.|+++|.-.+++|.+.++.- -.....+..+.++..| +.-..++-+. .++..+.+.+..++.+
T Consensus 38 g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~g~~~~y~cdis~-~eei~~~a~~Vk~e~G 113 (300)
T KOG1201|consen 38 GEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKIGEAKAYTCDISD-REEIYRLAKKVKKEVG 113 (300)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhcCceeEEEecCCC-HHHHHHHHHHHHHhcC
Confidence 44788888998999999999999998544442 2234456666777667 5555666554 5677788888888764
No 114
>PRK08628 short chain dehydrogenase; Provisional
Probab=85.99 E-value=8 Score=30.99 Aligned_cols=56 Identities=14% Similarity=0.090 Sum_probs=41.0
Q ss_pred CeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCC
Q 028618 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPA 125 (206)
Q Consensus 70 ~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~ 125 (206)
+..+|+..+|-.|.++|..-...|.+++++..........+.++..|.++..+..|
T Consensus 8 ~~ilItGasggiG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D 63 (258)
T PRK08628 8 KVVIVTGGASGIGAAISLRLAEEGAIPVIFGRSAPDDEFAEELRALQPRAEFVQVD 63 (258)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCCcEEEEcCChhhHHHHHHHHhcCCceEEEEcc
Confidence 36788888899999999999999999888765443333345566678777666554
No 115
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=85.88 E-value=7.5 Score=31.25 Aligned_cols=56 Identities=18% Similarity=0.202 Sum_probs=39.6
Q ss_pred CeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCC
Q 028618 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPA 125 (206)
Q Consensus 70 ~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~ 125 (206)
+..+|+..+|.-|.++|......|.+++++......+...+.+...+.++..+..|
T Consensus 16 k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 71 (258)
T PRK06935 16 KVAIVTGGNTGLGQGYAVALAKAGADIIITTHGTNWDETRRLIEKEGRKVTFVQVD 71 (258)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHhcCCceEEEEcC
Confidence 36889999999999999999999999888876522222334455567666655444
No 116
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=85.81 E-value=12 Score=31.55 Aligned_cols=57 Identities=21% Similarity=0.230 Sum_probs=43.0
Q ss_pred HcCCCCCCCeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHH-cCCEEEE
Q 028618 62 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRA-FGAELVL 121 (206)
Q Consensus 62 ~~g~~~~~~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~-~Ga~v~~ 121 (206)
+.+.+++|+..+|.+.+|..|.+++-.|+.+|.++++..+ ++.+.+.++. +|++-++
T Consensus 145 ~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~---~~~~~~~~~~~lGa~~vi 202 (338)
T cd08295 145 EVCKPKKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAG---SDEKVDLLKNKLGFDDAF 202 (338)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHhcCCceeE
Confidence 3455677878888888899999999999999998655433 3567777777 8986544
No 117
>PRK13656 trans-2-enoyl-CoA reductase; Provisional
Probab=85.70 E-value=19 Score=31.69 Aligned_cols=57 Identities=18% Similarity=0.132 Sum_probs=37.1
Q ss_pred CCCCCCChhhHHHHHHHHHHHHcCCCC-CCCeEEEeeCCCchHHH--HHHHHHHCCCcEEEEe
Q 028618 41 MMEPCSSVKDRIGYSMISDAEAKGLIT-PGESVLIEPTSGNTGIG--LAFMAAAKQYRLIITM 100 (206)
Q Consensus 41 ~~~ptGS~K~R~a~~~~~~a~~~g~~~-~~~~~vv~aSsGN~g~a--lA~~a~~~g~~~~ivv 100 (206)
+.+|.|.- +.....+...+.+|... .++..+|+..++..|.| +|.+. ..|..++++-
T Consensus 14 ~~hp~gc~--~~v~~qi~~~~~~~~~~~ggK~aLVTGaSsGIGlA~~IA~al-~~GA~Vi~v~ 73 (398)
T PRK13656 14 TAHPVGCE--ANVKEQIEYVKAQGPIANGPKKVLVIGASSGYGLASRIAAAF-GAGADTLGVF 73 (398)
T ss_pred CCCCHHHH--HHHHHHHHHHHhcCCcCCCCCEEEEECCCchHhHHHHHHHHH-HcCCeEEEEe
Confidence 44666643 34556777777888773 34567777777767777 55566 6788776664
No 118
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=85.04 E-value=5.3 Score=33.77 Aligned_cols=57 Identities=18% Similarity=0.110 Sum_probs=41.2
Q ss_pred HHcCCCCCCCeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 028618 61 EAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 121 (206)
Q Consensus 61 ~~~g~~~~~~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~ 121 (206)
.++..+++|++.+|.. .|..|.+++..|+.+|.+++++.+ ++.|++.++.+|++.+.
T Consensus 158 ~~~~~~~~g~~VlV~G-~g~iG~~a~~~a~~~G~~vi~~~~---~~~~~~~a~~~Ga~~vi 214 (329)
T TIGR02822 158 LLRASLPPGGRLGLYG-FGGSAHLTAQVALAQGATVHVMTR---GAAARRLALALGAASAG 214 (329)
T ss_pred HHhcCCCCCCEEEEEc-CCHHHHHHHHHHHHCCCeEEEEeC---ChHHHHHHHHhCCceec
Confidence 3445577776666655 488899999999999987554422 45678889999997654
No 119
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=84.85 E-value=9.3 Score=30.74 Aligned_cols=55 Identities=16% Similarity=0.181 Sum_probs=39.6
Q ss_pred CeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCC
Q 028618 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPA 125 (206)
Q Consensus 70 ~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~ 125 (206)
+..+|+..++--|.++|......|.+++++-... .+...+.++..|.++..+..|
T Consensus 9 k~~lItGas~gIG~aia~~l~~~G~~vv~~~~~~-~~~~~~~~~~~~~~~~~~~~D 63 (251)
T PRK12481 9 KVAIITGCNTGLGQGMAIGLAKAGADIVGVGVAE-APETQAQVEALGRKFHFITAD 63 (251)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEecCch-HHHHHHHHHHcCCeEEEEEeC
Confidence 4678999999999999999999999988764432 223344556678777655443
No 120
>PRK08589 short chain dehydrogenase; Validated
Probab=84.85 E-value=7 Score=31.89 Aligned_cols=56 Identities=14% Similarity=0.035 Sum_probs=38.7
Q ss_pred CeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCC
Q 028618 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPA 125 (206)
Q Consensus 70 ~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~ 125 (206)
+..+|+..+|--|.++|......|.+++++-.........+.++..+.++..+..|
T Consensus 7 k~vlItGas~gIG~aia~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~D 62 (272)
T PRK08589 7 KVAVITGASTGIGQASAIALAQEGAYVLAVDIAEAVSETVDKIKSNGGKAKAYHVD 62 (272)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHhcCCeEEEEEee
Confidence 46788888899999999999999998888765521222344555667666555443
No 121
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=84.78 E-value=13 Score=31.92 Aligned_cols=58 Identities=19% Similarity=0.343 Sum_probs=40.9
Q ss_pred HcCCCCCCCeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEEEe
Q 028618 62 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLT 122 (206)
Q Consensus 62 ~~g~~~~~~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~ 122 (206)
+...+++++..+|.+ +|..|..++..|+.+|.+.++++ +.++.+++.++.+|++.++.
T Consensus 185 ~~~~i~~g~~VlV~G-~G~vG~~a~~lak~~G~~~Vi~~--~~~~~r~~~a~~~Ga~~~i~ 242 (371)
T cd08281 185 NTAGVRPGQSVAVVG-LGGVGLSALLGAVAAGASQVVAV--DLNEDKLALARELGATATVN 242 (371)
T ss_pred hccCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCcEEEE--cCCHHHHHHHHHcCCceEeC
Confidence 445567776666654 68999999999999999533333 33556777888899865543
No 122
>PRK05993 short chain dehydrogenase; Provisional
Probab=84.75 E-value=15 Score=29.99 Aligned_cols=53 Identities=28% Similarity=0.202 Sum_probs=39.8
Q ss_pred CeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCC
Q 028618 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPA 125 (206)
Q Consensus 70 ~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~ 125 (206)
+..+|+..+|..|.++|......|.+++++... +.+.+.+...|.+++.++-.
T Consensus 5 k~vlItGasggiG~~la~~l~~~G~~Vi~~~r~---~~~~~~l~~~~~~~~~~Dl~ 57 (277)
T PRK05993 5 RSILITGCSSGIGAYCARALQSDGWRVFATCRK---EEDVAALEAEGLEAFQLDYA 57 (277)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECC---HHHHHHHHHCCceEEEccCC
Confidence 367888999999999999998999988777543 34455555667777766654
No 123
>PRK06182 short chain dehydrogenase; Validated
Probab=84.51 E-value=17 Score=29.43 Aligned_cols=53 Identities=19% Similarity=0.183 Sum_probs=39.5
Q ss_pred CeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCC
Q 028618 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPA 125 (206)
Q Consensus 70 ~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~ 125 (206)
+..+|+.++|--|.++|......|.+++++... ..+++.+...+.+++.++-.
T Consensus 4 k~vlItGasggiG~~la~~l~~~G~~V~~~~r~---~~~l~~~~~~~~~~~~~Dv~ 56 (273)
T PRK06182 4 KVALVTGASSGIGKATARRLAAQGYTVYGAARR---VDKMEDLASLGVHPLSLDVT 56 (273)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC---HHHHHHHHhCCCeEEEeeCC
Confidence 367888999999999999999999988877543 23444555567777777654
No 124
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=84.49 E-value=16 Score=30.71 Aligned_cols=58 Identities=22% Similarity=0.349 Sum_probs=39.9
Q ss_pred cCCCCCC--CeEEEeeCCCchHHHHHHHHHHCCC-cEEEEeCCCCCHHHHHHHHH-cCCEEEEeC
Q 028618 63 KGLITPG--ESVLIEPTSGNTGIGLAFMAAAKQY-RLIITMPASMSLERRIILRA-FGAELVLTD 123 (206)
Q Consensus 63 ~g~~~~~--~~~vv~aSsGN~g~alA~~a~~~g~-~~~ivvp~~~~~~~~~~~~~-~Ga~v~~~~ 123 (206)
.+.+.++ ++.+|.+.+|..|.++.-.|+.+|. ++++..+ ++.+.+.++. +|++-++..
T Consensus 147 ~~~~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~---s~~~~~~~~~~lGa~~vi~~ 208 (345)
T cd08293 147 KGHITPGANQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICG---SDEKCQLLKSELGFDAAINY 208 (345)
T ss_pred hccCCCCCCCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcC---CHHHHHHHHHhcCCcEEEEC
Confidence 3445554 5667777779999999999999998 5655533 3466666655 888655443
No 125
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=84.41 E-value=19 Score=30.74 Aligned_cols=58 Identities=17% Similarity=0.208 Sum_probs=42.9
Q ss_pred HcCCCCCCCeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHH-HcCCEEEEe
Q 028618 62 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILR-AFGAELVLT 122 (206)
Q Consensus 62 ~~g~~~~~~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~-~~Ga~v~~~ 122 (206)
+.+.+.+|+..+|.+.+|..|.++...|+.+|.++++.. .++.+.+.++ .+|++-+.-
T Consensus 152 ~~~~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~---~~~~k~~~~~~~lGa~~vi~ 210 (348)
T PLN03154 152 EVCSPKKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSA---GSSQKVDLLKNKLGFDEAFN 210 (348)
T ss_pred HhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEc---CCHHHHHHHHHhcCCCEEEE
Confidence 345567787777777789999999999999999855542 3456777776 799865554
No 126
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=84.36 E-value=10 Score=30.37 Aligned_cols=56 Identities=9% Similarity=0.014 Sum_probs=40.9
Q ss_pred CeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCC-HHHHHHHHHcCCEEEEeCCC
Q 028618 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLTDPA 125 (206)
Q Consensus 70 ~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~-~~~~~~~~~~Ga~v~~~~~~ 125 (206)
+..+|+..+|..|.+++......|.+++++...... ....+.++..|.++..+..|
T Consensus 8 ~~vlItGasg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D 64 (262)
T PRK13394 8 KTAVVTGAASGIGKEIALELARAGAAVAIADLNQDGANAVADEINKAGGKAIGVAMD 64 (262)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhcCceEEEEECC
Confidence 468999999999999999999999987776554321 23344556678887666554
No 127
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=84.34 E-value=11 Score=30.01 Aligned_cols=55 Identities=15% Similarity=0.167 Sum_probs=39.7
Q ss_pred CeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCC
Q 028618 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPA 125 (206)
Q Consensus 70 ~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~ 125 (206)
++.+|+..+|.-|.++|......|.+++++.... .....+.++..+.++..+..|
T Consensus 6 k~vlItGas~gIG~~ia~~l~~~G~~vi~~~r~~-~~~~~~~~~~~~~~~~~~~~D 60 (248)
T TIGR01832 6 KVALVTGANTGLGQGIAVGLAEAGADIVGAGRSE-PSETQQQVEALGRRFLSLTAD 60 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEcCch-HHHHHHHHHhcCCceEEEECC
Confidence 4678888889999999999999999877775432 233345556677766666544
No 128
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=84.26 E-value=14 Score=31.49 Aligned_cols=57 Identities=25% Similarity=0.253 Sum_probs=40.5
Q ss_pred HcCCCCCCCeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 028618 62 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 121 (206)
Q Consensus 62 ~~g~~~~~~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~ 121 (206)
+.+.+.++++.+|. .+|-.|.+++..|+.+|.+.++.+ +.++.+++.++.+|++-++
T Consensus 170 ~~~~~~~g~~VlV~-G~g~vG~~a~~~ak~~G~~~Vi~~--~~~~~~~~~~~~~Ga~~~i 226 (358)
T TIGR03451 170 NTGGVKRGDSVAVI-GCGGVGDAAIAGAALAGASKIIAV--DIDDRKLEWAREFGATHTV 226 (358)
T ss_pred hccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEE--cCCHHHHHHHHHcCCceEE
Confidence 44556777666666 468899999999999999744444 2245677777888886444
No 129
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=84.19 E-value=15 Score=29.53 Aligned_cols=31 Identities=26% Similarity=0.336 Sum_probs=25.2
Q ss_pred eEEEeeCCCchHHHHHHHHHHCCCcEEEEeC
Q 028618 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMP 101 (206)
Q Consensus 71 ~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp 101 (206)
+.+|+.++|.-|.++|......|.++++.-.
T Consensus 2 ~vlItGas~gIG~aia~~l~~~G~~V~~~~r 32 (259)
T PRK08340 2 NVLVTASSRGIGFNVARELLKKGARVVISSR 32 (259)
T ss_pred eEEEEcCCcHHHHHHHHHHHHcCCEEEEEeC
Confidence 4688899999999999999888987666543
No 130
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=84.18 E-value=18 Score=30.48 Aligned_cols=58 Identities=26% Similarity=0.342 Sum_probs=40.5
Q ss_pred HcCCCCCCCeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEEEe
Q 028618 62 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLT 122 (206)
Q Consensus 62 ~~g~~~~~~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~ 122 (206)
+...+.+++..+|.+ +|..|.+++..|+.+|++.++++ ..++.+.+.++.+|++.++.
T Consensus 166 ~~~~~~~g~~vlI~g-~g~vG~~a~q~a~~~G~~~v~~~--~~~~~~~~~~~~~ga~~~i~ 223 (351)
T cd08233 166 RRSGFKPGDTALVLG-AGPIGLLTILALKAAGASKIIVS--EPSEARRELAEELGATIVLD 223 (351)
T ss_pred HhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCEEEEE--CCCHHHHHHHHHhCCCEEEC
Confidence 444566776666665 68999999999999999544444 23556677777788876554
No 131
>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family. This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,
Probab=84.09 E-value=19 Score=30.34 Aligned_cols=59 Identities=27% Similarity=0.405 Sum_probs=42.9
Q ss_pred HcCCCCCCCeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeC
Q 028618 62 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTD 123 (206)
Q Consensus 62 ~~g~~~~~~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~ 123 (206)
+...+.+++..+| ...|..|.+++..|+.+|.+.++.+.. ++.+.+.++.+|++.++..
T Consensus 168 ~~~~~~~g~~vlI-~g~g~vG~~~~~~a~~~G~~~v~~~~~--~~~~~~~~~~~g~~~v~~~ 226 (350)
T cd08256 168 DRANIKFDDVVVL-AGAGPLGLGMIGAARLKNPKKLIVLDL--KDERLALARKFGADVVLNP 226 (350)
T ss_pred HhcCCCCCCEEEE-ECCCHHHHHHHHHHHHcCCcEEEEEcC--CHHHHHHHHHcCCcEEecC
Confidence 4555677766556 666999999999999999886666544 3566777788898665433
No 132
>PRK12743 oxidoreductase; Provisional
Probab=84.04 E-value=7.5 Score=31.26 Aligned_cols=55 Identities=15% Similarity=0.212 Sum_probs=40.1
Q ss_pred eEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCC--HHHHHHHHHcCCEEEEeCCC
Q 028618 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS--LERRIILRAFGAELVLTDPA 125 (206)
Q Consensus 71 ~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~--~~~~~~~~~~Ga~v~~~~~~ 125 (206)
+.+|+..+|.-|.++|......|.+++++...+.. ....+.++..|.++..+..|
T Consensus 4 ~vlItGas~giG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 60 (256)
T PRK12743 4 VAIVTASDSGIGKACALLLAQQGFDIGITWHSDEEGAKETAEEVRSHGVRAEIRQLD 60 (256)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhcCCceEEEEcc
Confidence 67888999999999999999999988777544322 22245566778777766544
No 133
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=83.94 E-value=9.7 Score=28.14 Aligned_cols=56 Identities=29% Similarity=0.260 Sum_probs=40.9
Q ss_pred eEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCC----HHHHHHHHHcCCEEEEeCCCC
Q 028618 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS----LERRIILRAFGAELVLTDPAK 126 (206)
Q Consensus 71 ~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~----~~~~~~~~~~Ga~v~~~~~~~ 126 (206)
..+|+..++.-|+++|......|-..++++..+.. ...+..++..|.++..+..|-
T Consensus 2 ~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~~D~ 61 (167)
T PF00106_consen 2 TVLITGASSGIGRALARALARRGARVVILTSRSEDSEGAQELIQELKAPGAKITFIECDL 61 (167)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTTEEEEEEESSCHHHHHHHHHHHHHHTTSEEEEEESET
T ss_pred EEEEECCCCHHHHHHHHHHHhcCceEEEEeeecccccccccccccccccccccccccccc
Confidence 46888999999999999998887766666655522 223445677889888887553
No 134
>PRK07062 short chain dehydrogenase; Provisional
Probab=83.74 E-value=19 Score=28.89 Aligned_cols=33 Identities=9% Similarity=0.055 Sum_probs=27.3
Q ss_pred CeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCC
Q 028618 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPA 102 (206)
Q Consensus 70 ~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~ 102 (206)
+..+|+..+|.-|.++|......|.+++++...
T Consensus 9 k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~ 41 (265)
T PRK07062 9 RVAVVTGGSSGIGLATVELLLEAGASVAICGRD 41 (265)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCC
Confidence 467888999999999999998899987766554
No 135
>PRK08226 short chain dehydrogenase; Provisional
Probab=83.55 E-value=9.5 Score=30.65 Aligned_cols=56 Identities=18% Similarity=0.051 Sum_probs=37.9
Q ss_pred CeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCC
Q 028618 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPA 125 (206)
Q Consensus 70 ~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~ 125 (206)
++.+|+..+|.-|.++|......|.+++++-.........+.+...|.++..+..|
T Consensus 7 ~~~lItG~s~giG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~D 62 (263)
T PRK08226 7 KTALITGALQGIGEGIARVFARHGANLILLDISPEIEKLADELCGRGHRCTAVVAD 62 (263)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhCCceEEEECC
Confidence 36788899999999999999999998777654432122233344456666555444
No 136
>PRK06139 short chain dehydrogenase; Provisional
Probab=83.45 E-value=7.1 Score=33.23 Aligned_cols=56 Identities=23% Similarity=0.227 Sum_probs=39.6
Q ss_pred CeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCC-HHHHHHHHHcCCEEEEeCCC
Q 028618 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLTDPA 125 (206)
Q Consensus 70 ~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~-~~~~~~~~~~Ga~v~~~~~~ 125 (206)
+..+|+..+|--|.++|......|.+++++...... ....+.++..|+++..+..|
T Consensus 8 k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g~~~~~~~~D 64 (330)
T PRK06139 8 AVVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRALGAEVLVVPTD 64 (330)
T ss_pred CEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEee
Confidence 467888888999999999999999997776543221 22234566788887655443
No 137
>PRK07109 short chain dehydrogenase; Provisional
Probab=83.44 E-value=7.9 Score=32.92 Aligned_cols=56 Identities=18% Similarity=0.151 Sum_probs=40.4
Q ss_pred CeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCC-HHHHHHHHHcCCEEEEeCCC
Q 028618 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLTDPA 125 (206)
Q Consensus 70 ~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~-~~~~~~~~~~Ga~v~~~~~~ 125 (206)
+..+|+..+|--|.++|......|.+++++...... ....+.++..|+++..+..|
T Consensus 9 k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g~~~~~v~~D 65 (334)
T PRK07109 9 QVVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAGGEALAVVAD 65 (334)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEec
Confidence 367888889999999999999999988777654221 22344566778888766554
No 138
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=83.42 E-value=15 Score=29.40 Aligned_cols=55 Identities=13% Similarity=0.104 Sum_probs=39.9
Q ss_pred CeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCC
Q 028618 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPA 125 (206)
Q Consensus 70 ~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~ 125 (206)
+..+|+..+|.-|.++|......|.+++++-. .......+.++..+.++..+..|
T Consensus 11 k~~lItG~~~gIG~a~a~~l~~~G~~vv~~~~-~~~~~~~~~~~~~~~~~~~~~~D 65 (253)
T PRK08993 11 KVAVVTGCDTGLGQGMALGLAEAGCDIVGINI-VEPTETIEQVTALGRRFLSLTAD 65 (253)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEecC-cchHHHHHHHHhcCCeEEEEECC
Confidence 36899999999999999999999998776532 22344455566677777666544
No 139
>PRK05854 short chain dehydrogenase; Provisional
Probab=83.39 E-value=17 Score=30.51 Aligned_cols=33 Identities=24% Similarity=0.338 Sum_probs=25.6
Q ss_pred CeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCC
Q 028618 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPA 102 (206)
Q Consensus 70 ~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~ 102 (206)
+..+|+..++--|.++|....+.|.++++....
T Consensus 15 k~~lITGas~GIG~~~a~~La~~G~~Vil~~R~ 47 (313)
T PRK05854 15 KRAVVTGASDGLGLGLARRLAAAGAEVILPVRN 47 (313)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence 367888888888888888888888877766543
No 140
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=83.11 E-value=13 Score=30.86 Aligned_cols=50 Identities=20% Similarity=0.282 Sum_probs=35.3
Q ss_pred CCeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 028618 69 GESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 121 (206)
Q Consensus 69 ~~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~ 121 (206)
+++.+|...+|..|.+++..|+.+|.++++.... +.+.+.++.+|++-+.
T Consensus 147 ~~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~~~v~ 196 (326)
T cd08289 147 QGPVLVTGATGGVGSLAVSILAKLGYEVVASTGK---ADAADYLKKLGAKEVI 196 (326)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHCCCeEEEEecC---HHHHHHHHHcCCCEEE
Confidence 3456666677999999999999999986555332 3456666777774443
No 141
>PRK06114 short chain dehydrogenase; Provisional
Probab=82.77 E-value=16 Score=29.30 Aligned_cols=56 Identities=11% Similarity=0.058 Sum_probs=39.4
Q ss_pred CeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCC--HHHHHHHHHcCCEEEEeCCC
Q 028618 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS--LERRIILRAFGAELVLTDPA 125 (206)
Q Consensus 70 ~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~--~~~~~~~~~~Ga~v~~~~~~ 125 (206)
+..+|+..+|--|.++|......|.++++....... ....+.++..|.++..+..|
T Consensus 9 k~~lVtG~s~gIG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D 66 (254)
T PRK06114 9 QVAFVTGAGSGIGQRIAIGLAQAGADVALFDLRTDDGLAETAEHIEAAGRRAIQIAAD 66 (254)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCceEEEEcC
Confidence 467888888999999999999999988877654322 22344556667666655544
No 142
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=82.69 E-value=8.8 Score=25.12 Aligned_cols=49 Identities=20% Similarity=0.088 Sum_probs=36.6
Q ss_pred EEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCC-----H----HHHHHHHHcCCEEEE
Q 028618 73 LIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-----L----ERRIILRAFGAELVL 121 (206)
Q Consensus 73 vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~-----~----~~~~~~~~~Ga~v~~ 121 (206)
++.-.+|..|.-+|.+.+.+|.+++++.+.... + .-.+.++..|.+++.
T Consensus 2 vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~~ 59 (80)
T PF00070_consen 2 VVVIGGGFIGIELAEALAELGKEVTLIERSDRLLPGFDPDAAKILEEYLRKRGVEVHT 59 (80)
T ss_dssp EEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSSTTSSHHHHHHHHHHHHHTTEEEEE
T ss_pred EEEECcCHHHHHHHHHHHHhCcEEEEEeccchhhhhcCHHHHHHHHHHHHHCCCEEEe
Confidence 567789999999999999999999999876431 1 223456667766654
No 143
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=82.67 E-value=15 Score=30.32 Aligned_cols=56 Identities=25% Similarity=0.280 Sum_probs=38.4
Q ss_pred HcCCCCCCCeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEE
Q 028618 62 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 120 (206)
Q Consensus 62 ~~g~~~~~~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~ 120 (206)
+...+.++...+|...+|..|.+++..|+.+|.+++++.... .+.+.++.+|++-+
T Consensus 133 ~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~~---~~~~~~~~~g~~~~ 188 (324)
T cd08292 133 DFLGVKPGQWLIQNAAGGAVGKLVAMLAAARGINVINLVRRD---AGVAELRALGIGPV 188 (324)
T ss_pred HhhCCCCCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecCH---HHHHHHHhcCCCEE
Confidence 345566776666767779999999999999999877665432 33444445566433
No 144
>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]
Probab=82.58 E-value=13 Score=31.58 Aligned_cols=59 Identities=20% Similarity=0.263 Sum_probs=47.0
Q ss_pred HHcCCCCCCCeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHH-cCCEEEEe
Q 028618 61 EAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRA-FGAELVLT 122 (206)
Q Consensus 61 ~~~g~~~~~~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~-~Ga~v~~~ 122 (206)
.+-|..++|++.+|++.+|--|.-+.-.|+..|++++.+.-. ++|.+.++. +|-+...-
T Consensus 143 l~igqpk~GetvvVSaAaGaVGsvvgQiAKlkG~rVVGiaGg---~eK~~~l~~~lGfD~~id 202 (340)
T COG2130 143 LDIGQPKAGETVVVSAAAGAVGSVVGQIAKLKGCRVVGIAGG---AEKCDFLTEELGFDAGID 202 (340)
T ss_pred HHhcCCCCCCEEEEEecccccchHHHHHHHhhCCeEEEecCC---HHHHHHHHHhcCCceeee
Confidence 455667778899999999999999999999999999988644 477777776 77665543
No 145
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=82.57 E-value=18 Score=30.31 Aligned_cols=54 Identities=24% Similarity=0.263 Sum_probs=38.9
Q ss_pred CCCCCCeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 028618 65 LITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 121 (206)
Q Consensus 65 ~~~~~~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~ 121 (206)
.+.+++..+|.+.+|..|.+++..|+.+|.++++..+. +.+.+.++.+|++-+.
T Consensus 162 ~~~~~~~vlV~g~~~~vg~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~~~v~ 215 (341)
T cd08297 162 GLKPGDWVVISGAGGGLGHLGVQYAKAMGLRVIAIDVG---DEKLELAKELGADAFV 215 (341)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCC---HHHHHHHHHcCCcEEE
Confidence 45666677777777889999999999999987666433 3555666677765443
No 146
>PRK06720 hypothetical protein; Provisional
Probab=82.53 E-value=20 Score=27.44 Aligned_cols=32 Identities=16% Similarity=0.181 Sum_probs=24.7
Q ss_pred CeEEEeeCCCchHHHHHHHHHHCCCcEEEEeC
Q 028618 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMP 101 (206)
Q Consensus 70 ~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp 101 (206)
+..+|+..++--|.++|......|.++++.-.
T Consensus 17 k~~lVTGa~~GIG~aia~~l~~~G~~V~l~~r 48 (169)
T PRK06720 17 KVAIVTGGGIGIGRNTALLLAKQGAKVIVTDI 48 (169)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCCEEEEEEC
Confidence 36778888888899999888888887666543
No 147
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=82.50 E-value=14 Score=31.19 Aligned_cols=54 Identities=17% Similarity=0.191 Sum_probs=39.0
Q ss_pred CCCCCeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEEEe
Q 028618 66 ITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLT 122 (206)
Q Consensus 66 ~~~~~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~ 122 (206)
..++++.+|.+ +|..|++....|+.+|.+.++++. .++.+++..+.+|++.+..
T Consensus 167 ~~~g~~VlV~G-~G~vG~~aiqlak~~G~~~Vi~~~--~~~~~~~~a~~lGa~~vi~ 220 (343)
T PRK09880 167 DLQGKRVFVSG-VGPIGCLIVAAVKTLGAAEIVCAD--VSPRSLSLAREMGADKLVN 220 (343)
T ss_pred CCCCCEEEEEC-CCHHHHHHHHHHHHcCCcEEEEEe--CCHHHHHHHHHcCCcEEec
Confidence 44565666654 699999999999999986444432 3467788889999976543
No 148
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=82.49 E-value=18 Score=30.28 Aligned_cols=53 Identities=21% Similarity=0.262 Sum_probs=38.8
Q ss_pred CCCCCCeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 028618 65 LITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 121 (206)
Q Consensus 65 ~~~~~~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~ 121 (206)
.+.+++..+|.. +|..|.+++..|+.+|.+++++.+ .+.+++.++.+|++-++
T Consensus 160 ~~~~~~~vlV~g-~g~iG~~~~~~a~~~G~~vi~~~~---~~~~~~~~~~~g~~~~i 212 (333)
T cd08296 160 GAKPGDLVAVQG-IGGLGHLAVQYAAKMGFRTVAISR---GSDKADLARKLGAHHYI 212 (333)
T ss_pred CCCCCCEEEEEC-CcHHHHHHHHHHHHCCCeEEEEeC---ChHHHHHHHHcCCcEEe
Confidence 456666666666 899999999999999998655533 34567777888885544
No 149
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=82.48 E-value=24 Score=28.34 Aligned_cols=122 Identities=10% Similarity=0.043 Sum_probs=73.9
Q ss_pred HHHHHHHHHHcCCCCCCCeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHH
Q 028618 53 GYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAV 132 (206)
Q Consensus 53 a~~~~~~a~~~g~~~~~~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~ 132 (206)
+.-++..+.+-|. +..=|+.++--...+....++.+. ++.|=.=.-.++...++....||+.++.|+-. .+
T Consensus 27 a~~~a~Ali~gGi----~~IEITl~sp~a~e~I~~l~~~~p-~~lIGAGTVL~~~q~~~a~~aGa~fiVsP~~~--~e-- 97 (211)
T COG0800 27 ALPLAKALIEGGI----PAIEITLRTPAALEAIRALAKEFP-EALIGAGTVLNPEQARQAIAAGAQFIVSPGLN--PE-- 97 (211)
T ss_pred HHHHHHHHHHcCC----CeEEEecCCCCHHHHHHHHHHhCc-ccEEccccccCHHHHHHHHHcCCCEEECCCCC--HH--
Confidence 4445555566665 123355677777888888888888 54443333357888999999999999998752 23
Q ss_pred HHHHHHHHhCCCeEEcCCCCCCccHHHHHHhHHHHHHh--------------hhC-CCCCEEEEccCcch
Q 028618 133 QKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWK--------------GSG-GRIDALVSGIGTGG 187 (206)
Q Consensus 133 ~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~--------------q~~-~~~d~vv~~vG~Gg 187 (206)
..+.+.++ +..+++...+|.-.+. -...|.++++ -+. +-++.-|+|+|+=+
T Consensus 98 --v~~~a~~~-~ip~~PG~~TptEi~~-Ale~G~~~lK~FPa~~~Gg~~~~ka~~gP~~~v~~~pTGGVs 163 (211)
T COG0800 98 --VAKAANRY-GIPYIPGVATPTEIMA-ALELGASALKFFPAEVVGGPAMLKALAGPFPQVRFCPTGGVS 163 (211)
T ss_pred --HHHHHHhC-CCcccCCCCCHHHHHH-HHHcChhheeecCccccCcHHHHHHHcCCCCCCeEeecCCCC
Confidence 33345555 6777777666654222 2223333332 221 23677788887543
No 150
>KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only]
Probab=82.36 E-value=25 Score=30.20 Aligned_cols=85 Identities=14% Similarity=0.237 Sum_probs=54.7
Q ss_pred eEEEeeCCCchHHHHHHHHHHC-CCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChH-HHHHHHHHHHHhCCCeEEc
Q 028618 71 SVLIEPTSGNTGIGLAFMAAAK-QYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMK-GAVQKAEEILAKTPNAYML 148 (206)
Q Consensus 71 ~~vv~aSsGN~g~alA~~a~~~-g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~-~~~~~a~~~~~~~~~~~~~ 148 (206)
.+++.+++|..|.-.|..=-.. |=++.++.-..-...-.+..+.+|++|..++.+.+-. .-.....++++..++.+|+
T Consensus 69 ~tf~isgsGh~g~E~al~N~lePgd~vLv~~~G~wg~ra~D~~~r~ga~V~~v~~~~G~~~~le~i~~~lsqh~p~~vfv 148 (385)
T KOG2862|consen 69 QTFVISGSGHSGWEAALVNLLEPGDNVLVVSTGTWGQRAADCARRYGAEVDVVEADIGQAVPLEEITEKLSQHKPKAVFV 148 (385)
T ss_pred ceEEEecCCcchHHHHHHhhcCCCCeEEEEEechHHHHHHHHHHhhCceeeEEecCcccCccHHHHHHHHHhcCCceEEE
Confidence 6788888888876655443333 4333333333345556777899999999997764311 2244456677778899998
Q ss_pred CCCCCCc
Q 028618 149 QQFENPA 155 (206)
Q Consensus 149 ~~~~~~~ 155 (206)
-+.+..-
T Consensus 149 ~hgdsST 155 (385)
T KOG2862|consen 149 THGDSST 155 (385)
T ss_pred EecCccc
Confidence 8766543
No 151
>TIGR01751 crot-CoA-red crotonyl-CoA reductase. The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.
Probab=82.12 E-value=11 Score=32.72 Aligned_cols=56 Identities=29% Similarity=0.341 Sum_probs=42.4
Q ss_pred CCCCCCCeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEEEe
Q 028618 64 GLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLT 122 (206)
Q Consensus 64 g~~~~~~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~ 122 (206)
..+.+++..+|...+|..|.+++..|+.+|.+.+++. .+..+.+.++.+|+..+.-
T Consensus 185 ~~~~~g~~vlV~Ga~g~vG~~ai~~ak~~G~~vi~~~---~~~~~~~~~~~~g~~~~v~ 240 (398)
T TIGR01751 185 ATVKPGDNVLIWGAAGGLGSYATQLARAGGGNPVAVV---SSPEKAEYCRELGAEAVID 240 (398)
T ss_pred cCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCeEEEEc---CCHHHHHHHHHcCCCEEec
Confidence 4456666777777789999999999999999865553 3456778888899876553
No 152
>PRK12937 short chain dehydrogenase; Provisional
Probab=81.93 E-value=16 Score=28.86 Aligned_cols=56 Identities=16% Similarity=0.195 Sum_probs=40.7
Q ss_pred CeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCC--HHHHHHHHHcCCEEEEeCCC
Q 028618 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS--LERRIILRAFGAELVLTDPA 125 (206)
Q Consensus 70 ~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~--~~~~~~~~~~Ga~v~~~~~~ 125 (206)
+..+|+..+|..|.++|......|.+++++.....+ ....+.++..+.++..+..+
T Consensus 6 ~~vlItG~~~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 63 (245)
T PRK12937 6 KVAIVTGASRGIGAAIARRLAADGFAVAVNYAGSAAAADELVAEIEAAGGRAIAVQAD 63 (245)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHHHhcCCeEEEEECC
Confidence 367888999999999999999999988776544322 22344556678887777654
No 153
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=81.72 E-value=7.2 Score=29.58 Aligned_cols=46 Identities=15% Similarity=0.175 Sum_probs=36.2
Q ss_pred CCchHHHHHHHHHHCCCcEEEEeCCC--CCH--HHH----HHHHHcCCEEEEeC
Q 028618 78 SGNTGIGLAFMAAAKQYRLIITMPAS--MSL--ERR----IILRAFGAELVLTD 123 (206)
Q Consensus 78 sGN~g~alA~~a~~~g~~~~ivvp~~--~~~--~~~----~~~~~~Ga~v~~~~ 123 (206)
-+|.++|++..++++|+.++++.|+. .++ ..+ +..+..|.++...+
T Consensus 12 ~~rv~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~ 65 (158)
T PF00185_consen 12 HNRVAHSLIELLAKFGMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNGGKITITD 65 (158)
T ss_dssp TSHHHHHHHHHHHHTTSEEEEESSGGGGGSHHHHHHHHHHHHHHHHTTEEEEES
T ss_pred CChHHHHHHHHHHHcCCEEEEECCCcccCCCCHHHHHHHHHHHHHhCCCeEEEe
Confidence 38999999999999999999999998 455 233 33455688888883
No 154
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=81.55 E-value=30 Score=28.95 Aligned_cols=57 Identities=26% Similarity=0.373 Sum_probs=40.1
Q ss_pred HcCCCCCCCeEEEeeCCCchHHHHHHHHHHCCCc-EEEEeCCCCCHHHHHHHHHcCCEEEEe
Q 028618 62 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYR-LIITMPASMSLERRIILRAFGAELVLT 122 (206)
Q Consensus 62 ~~g~~~~~~~~vv~aSsGN~g~alA~~a~~~g~~-~~ivvp~~~~~~~~~~~~~~Ga~v~~~ 122 (206)
++..+.+|++.+|.+ +|..|.+++..|+.+|.+ ++++ +.++.+++.++.+|++.++.
T Consensus 157 ~~~~~~~g~~vlV~G-~G~vG~~~~~~ak~~G~~~vi~~---~~~~~~~~~~~~~ga~~~i~ 214 (339)
T cd08239 157 RRVGVSGRDTVLVVG-AGPVGLGALMLARALGAEDVIGV---DPSPERLELAKALGADFVIN 214 (339)
T ss_pred HhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCEEEEE---CCCHHHHHHHHHhCCCEEEc
Confidence 334456676666664 689999999999999998 4443 23456777778899865543
No 155
>PF09837 DUF2064: Uncharacterized protein conserved in bacteria (DUF2064); InterPro: IPR018641 This entry contains proteins that have no known function. ; PDB: 3CGX_A.
Probab=81.25 E-value=18 Score=26.19 Aligned_cols=97 Identities=14% Similarity=0.128 Sum_probs=51.9
Q ss_pred HHHHHHHCCCcEEEEeCCC-CCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHHHHh
Q 028618 85 LAFMAAAKQYRLIITMPAS-MSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYET 163 (206)
Q Consensus 85 lA~~a~~~g~~~~ivvp~~-~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t 163 (206)
|+...+..+.+..++.... ............+.+++.-.+.. +-+++..|.+.+.+......+-..|.|.... .+
T Consensus 2 l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~Q~g~d-LG~Rm~~a~~~~~~g~~~vvliGsD~P~l~~-~~-- 77 (122)
T PF09837_consen 2 LAALAQADGADVVLAYTPDGDHAAFRQLWLPSGFSFFPQQGGD-LGERMANAFQQAARGYEPVVLIGSDCPDLTP-DD-- 77 (122)
T ss_dssp ------TSSSEEEEEE----TTHHHHHHHH-TTSEEEE--SSS-HHHHHHHHHHHHHTT-SEEEEE-SS-TT--H-HH--
T ss_pred ccccccCCCcCEEEEEcCCccHHHHhccccCCCCEEeecCCCC-HHHHHHHHHHHHHcCCCcEEEEcCCCCCCCH-HH--
Confidence 3455667788888887554 44443333556677777665543 7888888887774443456666778888743 22
Q ss_pred HHHHHHhhhCCCCCEEEEccCcch
Q 028618 164 TGPELWKGSGGRIDALVSGIGTGG 187 (206)
Q Consensus 164 ~~~Ei~~q~~~~~d~vv~~vG~Gg 187 (206)
-.+.++.+ .+.|.|+.|+--||
T Consensus 78 -l~~A~~~L-~~~d~VlgPa~DGG 99 (122)
T PF09837_consen 78 -LEQAFEAL-QRHDVVLGPAEDGG 99 (122)
T ss_dssp -HHHHHHHT-TT-SEEEEEBTTSS
T ss_pred -HHHHHHHh-ccCCEEEeeccCCC
Confidence 23444555 34599999998776
No 156
>PRK12828 short chain dehydrogenase; Provisional
Probab=81.24 E-value=19 Score=28.07 Aligned_cols=56 Identities=18% Similarity=0.017 Sum_probs=40.3
Q ss_pred CeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCC-HHHHHHHHHcCCEEEEeCCC
Q 028618 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLTDPA 125 (206)
Q Consensus 70 ~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~-~~~~~~~~~~Ga~v~~~~~~ 125 (206)
++.+|+.++|--|.+++....+.|.+++++.....+ ......+...+.+++..+-.
T Consensus 8 k~vlItGatg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~ 64 (239)
T PRK12828 8 KVVAITGGFGGLGRATAAWLAARGARVALIGRGAAPLSQTLPGVPADALRIGGIDLV 64 (239)
T ss_pred CEEEEECCCCcHhHHHHHHHHHCCCeEEEEeCChHhHHHHHHHHhhcCceEEEeecC
Confidence 478899999999999999998889997777654322 12234455667777776654
No 157
>PRK14030 glutamate dehydrogenase; Provisional
Probab=81.22 E-value=11 Score=33.66 Aligned_cols=60 Identities=15% Similarity=0.055 Sum_probs=45.7
Q ss_pred hhHHHHHHHHHHHHcCCCCCCCeEEEeeCCCchHHHHHHHHHHCCCcEEE--------EeCCCCCHHH
Q 028618 49 KDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLII--------TMPASMSLER 108 (206)
Q Consensus 49 K~R~a~~~~~~a~~~g~~~~~~~~vv~aSsGN~g~alA~~a~~~g~~~~i--------vvp~~~~~~~ 108 (206)
--||..+.+..+.+..-......+++....||-|..+|.....+|.+++. +-|+.....+
T Consensus 207 Tg~Gv~~~~~~~~~~~g~~l~g~~vaIQGfGnVG~~aA~~L~e~GakvVavSD~~G~i~d~~Gld~~~ 274 (445)
T PRK14030 207 TGFGALYFVHQMLETKGIDIKGKTVAISGFGNVAWGAATKATELGAKVVTISGPDGYIYDPDGISGEK 274 (445)
T ss_pred cHHHHHHHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHH
Confidence 45788888877654332344457889899999999999999999999999 5566666655
No 158
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=81.18 E-value=27 Score=28.06 Aligned_cols=77 Identities=16% Similarity=0.088 Sum_probs=49.5
Q ss_pred EEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHH-------------HHHHcCCEEEEeCCCCChHHHHHHHHHH
Q 028618 72 VLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRI-------------ILRAFGAELVLTDPAKGMKGAVQKAEEI 138 (206)
Q Consensus 72 ~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~-------------~~~~~Ga~v~~~~~~~~~~~~~~~a~~~ 138 (206)
++....+||.|.++|..-...|.++++--.......... ....-+++|+++.-. |........++
T Consensus 3 ~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l~~~i~~~~~~dA~~~aDVVvLAVP--~~a~~~v~~~l 80 (211)
T COG2085 3 IIAIIGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAALGPLITGGSNEDAAALADVVVLAVP--FEAIPDVLAEL 80 (211)
T ss_pred EEEEeccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHhhccccccCChHHHHhcCCEEEEecc--HHHHHhHHHHH
Confidence 466678999999999999999998888755543211111 112344677777665 55555666666
Q ss_pred HHhCCCeEEcCC
Q 028618 139 LAKTPNAYMLQQ 150 (206)
Q Consensus 139 ~~~~~~~~~~~~ 150 (206)
....++...++.
T Consensus 81 ~~~~~~KIvID~ 92 (211)
T COG2085 81 RDALGGKIVIDA 92 (211)
T ss_pred HHHhCCeEEEec
Confidence 655545666654
No 159
>PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B ....
Probab=80.98 E-value=8.3 Score=30.73 Aligned_cols=49 Identities=20% Similarity=0.236 Sum_probs=26.3
Q ss_pred CCCchHHHHHHHHHHCCCcEEEEeCCCCC--HHHHHHHHHcCCEEEEeCCC
Q 028618 77 TSGNTGIGLAFMAAAKQYRLIITMPASMS--LERRIILRAFGAELVLTDPA 125 (206)
Q Consensus 77 SsGN~g~alA~~a~~~g~~~~ivvp~~~~--~~~~~~~~~~Ga~v~~~~~~ 125 (206)
+++.-|.++|....+.|.++++.-..... ....+..+.+|.+++.++-.
T Consensus 4 ~s~GiG~aia~~l~~~Ga~V~~~~~~~~~~~~~~~~l~~~~~~~~~~~D~~ 54 (241)
T PF13561_consen 4 SSSGIGRAIARALAEEGANVILTDRNEEKLADALEELAKEYGAEVIQCDLS 54 (241)
T ss_dssp STSHHHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHHHTTSEEEESCTT
T ss_pred CCCChHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHHHcCCceEeecCc
Confidence 44566777777777777666666444321 11223334566665555543
No 160
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=80.96 E-value=13 Score=29.66 Aligned_cols=56 Identities=16% Similarity=0.055 Sum_probs=38.3
Q ss_pred CeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCC-HHHHHHHHHcCCEEEEeCCC
Q 028618 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLTDPA 125 (206)
Q Consensus 70 ~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~-~~~~~~~~~~Ga~v~~~~~~ 125 (206)
++.+|+..+|..|.++|......|.+++++...... ....+.++..|.++..+..|
T Consensus 11 k~vlItGa~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~D 67 (255)
T PRK07523 11 RRALVTGSSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQGLSAHALAFD 67 (255)
T ss_pred CEEEEECCcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCceEEEEEcc
Confidence 478888999999999999999899987665433211 12233455567777766544
No 161
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=80.90 E-value=18 Score=28.41 Aligned_cols=56 Identities=18% Similarity=0.169 Sum_probs=39.5
Q ss_pred CeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCC--HHHHHHHHHcCCEEEEeCCC
Q 028618 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS--LERRIILRAFGAELVLTDPA 125 (206)
Q Consensus 70 ~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~--~~~~~~~~~~Ga~v~~~~~~ 125 (206)
++.+|+..+|..|.+++......|.+++++.....+ ....+.++..+.++..+..+
T Consensus 6 ~~vlItG~sg~iG~~l~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 63 (248)
T PRK05557 6 KVALVTGASRGIGRAIAERLAAQGANVVINYASSEAGAEALVAEIGALGGKALAVQGD 63 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHhcCCceEEEEcC
Confidence 367888999999999999998899987666654322 12233455567787777554
No 162
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=80.71 E-value=28 Score=29.19 Aligned_cols=56 Identities=25% Similarity=0.418 Sum_probs=39.6
Q ss_pred cCCCCCCCeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 028618 63 KGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 121 (206)
Q Consensus 63 ~g~~~~~~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~ 121 (206)
...+.+++..+| ..+|..|.+++..|+..|++.++.+... +.+.+.++.+|++-++
T Consensus 163 ~~~~~~g~~vlI-~g~g~vg~~~~~lak~~G~~~v~~~~~~--~~~~~~~~~~ga~~v~ 218 (345)
T cd08287 163 SAGVRPGSTVVV-VGDGAVGLCAVLAAKRLGAERIIAMSRH--EDRQALAREFGATDIV 218 (345)
T ss_pred hcCCCCCCEEEE-ECCCHHHHHHHHHHHHcCCCEEEEECCC--HHHHHHHHHcCCceEe
Confidence 344566656666 4589999999999999999865555433 4566777888885444
No 163
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=80.66 E-value=13 Score=29.18 Aligned_cols=34 Identities=21% Similarity=0.238 Sum_probs=29.2
Q ss_pred CeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCC
Q 028618 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPAS 103 (206)
Q Consensus 70 ~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~ 103 (206)
++.+|+..+|..|.+++......|.+++++....
T Consensus 6 ~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~ 39 (238)
T PRK05786 6 KKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNE 39 (238)
T ss_pred cEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCH
Confidence 3678999999999999999999999988876643
No 164
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=80.56 E-value=12 Score=32.34 Aligned_cols=61 Identities=23% Similarity=0.241 Sum_probs=46.8
Q ss_pred HHHcCCCCCCCeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 028618 60 AEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 124 (206)
Q Consensus 60 a~~~g~~~~~~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~ 124 (206)
+.++..+.||+. +.....|-.|.-..-+|+.+|.+++++ +.++.|++..+.+||+.+....
T Consensus 158 alk~~~~~pG~~-V~I~G~GGlGh~avQ~Aka~ga~Via~---~~~~~K~e~a~~lGAd~~i~~~ 218 (339)
T COG1064 158 ALKKANVKPGKW-VAVVGAGGLGHMAVQYAKAMGAEVIAI---TRSEEKLELAKKLGADHVINSS 218 (339)
T ss_pred ehhhcCCCCCCE-EEEECCcHHHHHHHHHHHHcCCeEEEE---eCChHHHHHHHHhCCcEEEEcC
Confidence 445556788854 555666677777778888899888888 5677899999999999998865
No 165
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=80.52 E-value=3.9 Score=30.80 Aligned_cols=41 Identities=17% Similarity=0.083 Sum_probs=32.6
Q ss_pred EEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcC
Q 028618 73 LIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFG 116 (206)
Q Consensus 73 vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~G 116 (206)
|....+||.|.|+|...+..|.+++++.++. ...+.++..+
T Consensus 2 I~ViGaG~~G~AlA~~la~~g~~V~l~~~~~---~~~~~i~~~~ 42 (157)
T PF01210_consen 2 IAVIGAGNWGTALAALLADNGHEVTLWGRDE---EQIEEINETR 42 (157)
T ss_dssp EEEESSSHHHHHHHHHHHHCTEEEEEETSCH---HHHHHHHHHT
T ss_pred EEEECcCHHHHHHHHHHHHcCCEEEEEeccH---HHHHHHHHhC
Confidence 5667899999999999999999999997764 4555555443
No 166
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=80.13 E-value=15 Score=29.70 Aligned_cols=56 Identities=16% Similarity=0.003 Sum_probs=38.5
Q ss_pred CeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCC-HHHHHHHHHcCCEEEEeCCC
Q 028618 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLTDPA 125 (206)
Q Consensus 70 ~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~-~~~~~~~~~~Ga~v~~~~~~ 125 (206)
+..+|+..+|..|.++|......|.+++++-..... ....+.++..|.++..+..|
T Consensus 11 k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 67 (265)
T PRK07097 11 KIALITGASYGIGFAIAKAYAKAGATIVFNDINQELVDKGLAAYRELGIEAHGYVCD 67 (265)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEcC
Confidence 468899999999999999999999987766433211 12233455667777666544
No 167
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=80.13 E-value=21 Score=28.31 Aligned_cols=56 Identities=18% Similarity=0.255 Sum_probs=40.0
Q ss_pred CeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCC--HHHHHHHHHcCCEEEEeCCC
Q 028618 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS--LERRIILRAFGAELVLTDPA 125 (206)
Q Consensus 70 ~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~--~~~~~~~~~~Ga~v~~~~~~ 125 (206)
++.+|+..+|.-|+++|......|.++++....+.. +...+.++..|.++..+..|
T Consensus 5 ~~vlItGa~g~iG~~~a~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D 62 (250)
T PRK08063 5 KVALVTGSSRGIGKAIALRLAEEGYDIAVNYARSRKAAEETAEEIEALGRKALAVKAN 62 (250)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEEcC
Confidence 367899999999999999999999987765433322 22334566678887776554
No 168
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=80.11 E-value=16 Score=29.73 Aligned_cols=56 Identities=16% Similarity=0.084 Sum_probs=39.3
Q ss_pred CeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCC-CHHHHHHHHHcCCEEEEeCCC
Q 028618 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASM-SLERRIILRAFGAELVLTDPA 125 (206)
Q Consensus 70 ~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~-~~~~~~~~~~~Ga~v~~~~~~ 125 (206)
+..+|+..+|..|.++|......|.+++++..... .+...+.++..|.++..+..|
T Consensus 11 k~vlVtGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D 67 (278)
T PRK08277 11 KVAVITGGGGVLGGAMAKELARAGAKVAILDRNQEKAEAVVAEIKAAGGEALAVKAD 67 (278)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECC
Confidence 36788889999999999999999998877765422 122234455567777666544
No 169
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=80.01 E-value=16 Score=30.50 Aligned_cols=56 Identities=18% Similarity=0.109 Sum_probs=40.3
Q ss_pred CeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCC--CHHHHHHHHHcCCEEEEeCCC
Q 028618 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASM--SLERRIILRAFGAELVLTDPA 125 (206)
Q Consensus 70 ~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~--~~~~~~~~~~~Ga~v~~~~~~ 125 (206)
+..+|+..+|.-|.++|......|.++++.-.... .....+.++..|.+++.+..|
T Consensus 13 k~~lVTGas~gIG~~ia~~L~~~Ga~Vv~~~~~~~~~~~~~~~~i~~~g~~~~~~~~D 70 (306)
T PRK07792 13 KVAVVTGAAAGLGRAEALGLARLGATVVVNDVASALDASDVLDEIRAAGAKAVAVAGD 70 (306)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEecCCchhHHHHHHHHHHhcCCeEEEEeCC
Confidence 46788899999999999999999998776643221 123345566778888777655
No 170
>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional
Probab=79.82 E-value=32 Score=28.51 Aligned_cols=56 Identities=27% Similarity=0.223 Sum_probs=40.4
Q ss_pred HcCCCCCCCeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEE
Q 028618 62 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 120 (206)
Q Consensus 62 ~~g~~~~~~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~ 120 (206)
+.+.+.+++..+|....|..|.+++..|+.+|++++.+.+ ...+.+.++.+|++-+
T Consensus 134 ~~~~~~~g~~vlI~g~~g~ig~~~~~lak~~G~~v~~~~~---~~~~~~~~~~~g~~~~ 189 (327)
T PRK10754 134 KTYEIKPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVG---SAQKAQRAKKAGAWQV 189 (327)
T ss_pred hhcCCCCCCEEEEEeCCcHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHCCCCEE
Confidence 3456677766667667899999999999999998766543 3445566677787443
No 171
>cd08288 MDR_yhdh Yhdh putative quinone oxidoreductases. Yhdh putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catal
Probab=79.80 E-value=17 Score=29.97 Aligned_cols=51 Identities=22% Similarity=0.290 Sum_probs=38.1
Q ss_pred CCCeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 028618 68 PGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 121 (206)
Q Consensus 68 ~~~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~ 121 (206)
+++..+|...+|..|.+++..|+.+|.+++++. .++.+.+.++.+|++-++
T Consensus 146 ~~~~vlI~ga~g~vg~~~~~~A~~~G~~vi~~~---~~~~~~~~~~~~g~~~~~ 196 (324)
T cd08288 146 GDGPVLVTGAAGGVGSVAVALLARLGYEVVAST---GRPEEADYLRSLGASEII 196 (324)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEe---CCHHHHHHHHhcCCCEEE
Confidence 444666666779999999999999999866654 344677777889985443
No 172
>PRK08643 acetoin reductase; Validated
Probab=79.63 E-value=20 Score=28.62 Aligned_cols=56 Identities=11% Similarity=0.112 Sum_probs=38.4
Q ss_pred CeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCH-HHHHHHHHcCCEEEEeCCC
Q 028618 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSL-ERRIILRAFGAELVLTDPA 125 (206)
Q Consensus 70 ~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~-~~~~~~~~~Ga~v~~~~~~ 125 (206)
+..+|+..+|..|.++|......|.+++++....... .....++..+.++..+..|
T Consensus 3 k~~lItGas~giG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D 59 (256)
T PRK08643 3 KVALVTGAGQGIGFAIAKRLVEDGFKVAIVDYNEETAQAAADKLSKDGGKAIAVKAD 59 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECC
Confidence 3678889999999999999999999877765443222 2223345567777666544
No 173
>PRK06172 short chain dehydrogenase; Provisional
Probab=79.60 E-value=16 Score=29.06 Aligned_cols=56 Identities=14% Similarity=0.204 Sum_probs=39.4
Q ss_pred CeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCC-HHHHHHHHHcCCEEEEeCCC
Q 028618 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLTDPA 125 (206)
Q Consensus 70 ~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~-~~~~~~~~~~Ga~v~~~~~~ 125 (206)
+..+|+..+|.-|.++|......|.+++++...... +...+.++..+.++..+..|
T Consensus 8 k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D 64 (253)
T PRK06172 8 KVALVTGGAAGIGRATALAFAREGAKVVVADRDAAGGEETVALIREAGGEALFVACD 64 (253)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcC
Confidence 367888999999999999999999987777544322 22244556677776665444
No 174
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=79.46 E-value=15 Score=30.85 Aligned_cols=52 Identities=29% Similarity=0.313 Sum_probs=38.1
Q ss_pred CCCCeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 028618 67 TPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 121 (206)
Q Consensus 67 ~~~~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~ 121 (206)
.+++..+|.+ .|..|.++...|+.+|.+.++++ +.++.+.+.++.+|++.++
T Consensus 162 ~~g~~vlV~~-~g~vg~~~~~la~~~G~~~v~~~--~~~~~~~~~~~~lg~~~~~ 213 (341)
T PRK05396 162 LVGEDVLITG-AGPIGIMAAAVAKHVGARHVVIT--DVNEYRLELARKMGATRAV 213 (341)
T ss_pred CCCCeEEEEC-CCHHHHHHHHHHHHcCCCEEEEE--cCCHHHHHHHHHhCCcEEe
Confidence 3555666654 68999999999999999644444 4556677888889986554
No 175
>TIGR01064 pyruv_kin pyruvate kinase. This enzyme is a homotetramer. Some forms are active only in the presence of fructose-1,6-bisphosphate or similar phosphorylated sugars.
Probab=79.45 E-value=48 Score=29.96 Aligned_cols=117 Identities=15% Similarity=0.103 Sum_probs=69.4
Q ss_pred HHHHHHHHCCCcEEEEe-----------CCCCCHHHHHHHHHcCCEEEEeCCCCC----hHHHHHHHHHHHHhCCCeE--
Q 028618 84 GLAFMAAAKQYRLIITM-----------PASMSLERRIILRAFGAELVLTDPAKG----MKGAVQKAEEILAKTPNAY-- 146 (206)
Q Consensus 84 alA~~a~~~g~~~~ivv-----------p~~~~~~~~~~~~~~Ga~v~~~~~~~~----~~~~~~~a~~~~~~~~~~~-- 146 (206)
-+..+|+..|+++++.. |..+...........|++.+....+.. -.++++...+.+++-...+
T Consensus 261 ~ii~aaraag~pvi~atqmLeSM~~~p~PTRAe~~dv~~~v~~G~d~v~ls~eta~G~yP~~~v~~m~~I~~~~E~~~~~ 340 (473)
T TIGR01064 261 KMIRKCNRAGKPVITATQMLDSMIKNPRPTRAEVSDVANAILDGTDAVMLSGETAKGKYPVEAVKMMAKIAKEAEKALAY 340 (473)
T ss_pred HHHHHHHHcCCCEEEEChhhhhhhcCCCCCcccHHHHHHHHHcCCCEEEEcchhhcCCCHHHHHHHHHHHHHHHHhccch
Confidence 35667889999988765 445566777888889999998866531 2345554444443221111
Q ss_pred ---EcCCCC-CC--ccHHHHHHhHHHHHHhhhCCCCCEEEEccCcchHHHHHHHHHHhcCCCCeEC
Q 028618 147 ---MLQQFE-NP--ANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKVR 206 (206)
Q Consensus 147 ---~~~~~~-~~--~~~~~g~~t~~~Ei~~q~~~~~d~vv~~vG~Gg~~aGi~~~~k~~~p~~~vi 206 (206)
|-.+.. .. .........-+.++.+.+ ..++||+.+-||.++--++++ .|+++||
T Consensus 341 ~~~~~~~~~~~~~~~~~~~~ia~~a~~~a~~~--~akaIVv~T~SG~TA~~vSr~----rp~~PIi 400 (473)
T TIGR01064 341 LTNFNDRKNSDPKPSTITEAIALSAVEAAEKL--DAKAIVVLTESGRTARLLSKY----RPNAPII 400 (473)
T ss_pred hhhhhhhhcccccCCChHHHHHHHHHHHHhhc--CCCEEEEEcCChHHHHHHHhh----CCCCCEE
Confidence 111100 00 011123334445666665 478999999999997666554 5777764
No 176
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=79.43 E-value=6.1 Score=38.80 Aligned_cols=31 Identities=16% Similarity=0.264 Sum_probs=28.2
Q ss_pred CeEEEeeCCCchHHHHHHHHHHCCCcEEEEe
Q 028618 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITM 100 (206)
Q Consensus 70 ~~~vv~aSsGN~g~alA~~a~~~g~~~~ivv 100 (206)
.+.|+.-.+|..|++.|+..++.|++++||=
T Consensus 306 gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE 336 (944)
T PRK12779 306 KPPIAVVGSGPSGLINAYLLAVEGFPVTVFE 336 (944)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEe
Confidence 3578889999999999999999999999994
No 177
>PRK12939 short chain dehydrogenase; Provisional
Probab=79.32 E-value=17 Score=28.72 Aligned_cols=56 Identities=14% Similarity=0.072 Sum_probs=37.8
Q ss_pred CeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCC-CHHHHHHHHHcCCEEEEeCCC
Q 028618 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASM-SLERRIILRAFGAELVLTDPA 125 (206)
Q Consensus 70 ~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~-~~~~~~~~~~~Ga~v~~~~~~ 125 (206)
+..+|+..+|.-|.++|......|.+++++..... .......++..+.++..+..|
T Consensus 8 ~~vlItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D 64 (250)
T PRK12939 8 KRALVTGAARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAGGRAHAIAAD 64 (250)
T ss_pred CEEEEeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcc
Confidence 46788889999999999999999998776633211 112233445567666665544
No 178
>PRK06128 oxidoreductase; Provisional
Probab=79.18 E-value=26 Score=28.99 Aligned_cols=56 Identities=16% Similarity=0.123 Sum_probs=40.4
Q ss_pred CeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCC---CHHHHHHHHHcCCEEEEeCCC
Q 028618 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASM---SLERRIILRAFGAELVLTDPA 125 (206)
Q Consensus 70 ~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~---~~~~~~~~~~~Ga~v~~~~~~ 125 (206)
+..+|+..+|--|.++|......|.++++...... .....+.++..|.++..+..|
T Consensus 56 k~vlITGas~gIG~~~a~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 114 (300)
T PRK06128 56 RKALITGADSGIGRATAIAFAREGADIALNYLPEEEQDAAEVVQLIQAEGRKAVALPGD 114 (300)
T ss_pred CEEEEecCCCcHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHHHcCCeEEEEecC
Confidence 37899999999999999999999998877643221 123345566778777766544
No 179
>PRK08278 short chain dehydrogenase; Provisional
Probab=78.90 E-value=24 Score=28.75 Aligned_cols=56 Identities=16% Similarity=0.196 Sum_probs=39.8
Q ss_pred CeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCC--------HHHHHHHHHcCCEEEEeCCC
Q 028618 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS--------LERRIILRAFGAELVLTDPA 125 (206)
Q Consensus 70 ~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~--------~~~~~~~~~~Ga~v~~~~~~ 125 (206)
+..+|+..+|--|.++|......|.+++++.....+ ....+.++..|.+++.+..|
T Consensus 7 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~D 70 (273)
T PRK08278 7 KTLFITGASRGIGLAIALRAARDGANIVIAAKTAEPHPKLPGTIHTAAEEIEAAGGQALPLVGD 70 (273)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEecccccccchhhHHHHHHHHHHhcCCceEEEEec
Confidence 367888889999999999999999998888754322 11123456677777666544
No 180
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=78.84 E-value=37 Score=28.34 Aligned_cols=53 Identities=23% Similarity=0.276 Sum_probs=37.4
Q ss_pred CCCCCCCeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEE
Q 028618 64 GLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAEL 119 (206)
Q Consensus 64 g~~~~~~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v 119 (206)
..+.+++..+|. .+|..|.+++..|+.+|+..++++ ...+.+...++.+|+.+
T Consensus 163 ~~~~~~~~vlI~-g~g~vg~~~~~~a~~~g~~~v~~~--~~~~~~~~~~~~~g~~~ 215 (344)
T cd08284 163 AQVRPGDTVAVI-GCGPVGLCAVLSAQVLGAARVFAV--DPVPERLERAAALGAEP 215 (344)
T ss_pred cCCccCCEEEEE-CCcHHHHHHHHHHHHcCCceEEEE--cCCHHHHHHHHHhCCeE
Confidence 345566566666 578999999999999998433444 33456677778899864
No 181
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=78.68 E-value=14 Score=28.44 Aligned_cols=104 Identities=17% Similarity=0.121 Sum_probs=64.1
Q ss_pred eEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEcCC
Q 028618 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQ 150 (206)
Q Consensus 71 ~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 150 (206)
+++-.-..|+-|+++|..++.+|++++++-|...+.. .....+.+. . + +++ +.++- +...+.-
T Consensus 37 ~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~---~~~~~~~~~--~--~--l~e-------ll~~a-Div~~~~ 99 (178)
T PF02826_consen 37 KTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEE---GADEFGVEY--V--S--LDE-------LLAQA-DIVSLHL 99 (178)
T ss_dssp SEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHH---HHHHTTEEE--S--S--HHH-------HHHH--SEEEE-S
T ss_pred CEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhh---hccccccee--e--e--hhh-------hcchh-hhhhhhh
Confidence 5677778899999999999999999999987764333 234444422 1 1 332 22332 4444433
Q ss_pred CCCCccHHHHHHhHHHHHHhhhCCCCCEEEEccCcchHH--HHHHHHHH
Q 028618 151 FENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTI--TGAGKFLK 197 (206)
Q Consensus 151 ~~~~~~~~~g~~t~~~Ei~~q~~~~~d~vv~~vG~Gg~~--aGi~~~~k 197 (206)
-.++.+ ..-+..|.+++++ ++.+++-+|-|+.+ ..+..+++
T Consensus 100 plt~~T----~~li~~~~l~~mk--~ga~lvN~aRG~~vde~aL~~aL~ 142 (178)
T PF02826_consen 100 PLTPET----RGLINAEFLAKMK--PGAVLVNVARGELVDEDALLDALE 142 (178)
T ss_dssp SSSTTT----TTSBSHHHHHTST--TTEEEEESSSGGGB-HHHHHHHHH
T ss_pred cccccc----ceeeeeeeeeccc--cceEEEeccchhhhhhhHHHHHHh
Confidence 333333 1345567788873 68999999988875 34444444
No 182
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=78.66 E-value=18 Score=28.66 Aligned_cols=57 Identities=11% Similarity=0.104 Sum_probs=39.5
Q ss_pred CeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCC--HHHHHHHHHcCCEEEEeCCCC
Q 028618 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS--LERRIILRAFGAELVLTDPAK 126 (206)
Q Consensus 70 ~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~--~~~~~~~~~~Ga~v~~~~~~~ 126 (206)
+..+|+..+|--|.++|......|.++++....... +...+.++..|.++..+..|-
T Consensus 7 ~~~lItG~s~~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~ 65 (247)
T PRK12935 7 KVAIVTGGAKGIGKAITVALAQEGAKVVINYNSSKEAAENLVNELGKEGHDVYAVQADV 65 (247)
T ss_pred CEEEEECCCCHHHHHHHHHHHHcCCEEEEEcCCcHHHHHHHHHHHHhcCCeEEEEECCC
Confidence 367888999999999999998899887765433211 122344566788887776553
No 183
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=78.64 E-value=46 Score=29.28 Aligned_cols=110 Identities=15% Similarity=0.098 Sum_probs=65.5
Q ss_pred eEEEeeCCCchHHHHHHHHHHC--CCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEc
Q 028618 71 SVLIEPTSGNTGIGLAFMAAAK--QYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYML 148 (206)
Q Consensus 71 ~~vv~aSsGN~g~alA~~a~~~--g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 148 (206)
+..|..|+|+-|.+..-..+++ .++++.+.-......-.++++.|+.+.+.+... ......++.....+-..+.
T Consensus 3 ~VaILGsTGSIG~~tL~vi~~~p~~f~VvaLaa~~n~~~l~~q~~~f~p~~v~i~~~----~~~~~l~~~l~~~~~~v~~ 78 (385)
T PRK05447 3 RITILGSTGSIGTQTLDVIRRNPDRFRVVALSAGKNVELLAEQAREFRPKYVVVADE----EAAKELKEALAAAGIEVLA 78 (385)
T ss_pred eEEEEcCChHHHHHHHHHHHhCccccEEEEEEcCCCHHHHHHHHHHhCCCEEEEcCH----HHHHHHHHhhccCCceEEE
Confidence 4567788999999877777665 677777776665666677889999999888754 2122111111110001111
Q ss_pred CCCCCCccHHHHHHhHHHHHHhhhCCCCCEEEEccCcchHHHHHHHHHHh
Q 028618 149 QQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKE 198 (206)
Q Consensus 149 ~~~~~~~~~~~g~~t~~~Ei~~q~~~~~d~vv~~vG~Gg~~aGi~~~~k~ 198 (206)
...|. .|+.+. +.+|.|+.++++...+.-+..+++.
T Consensus 79 --------G~~~~----~~l~~~--~~vD~Vv~Ai~G~aGl~ptl~Ai~a 114 (385)
T PRK05447 79 --------GEEGL----CELAAL--PEADVVVAAIVGAAGLLPTLAAIRA 114 (385)
T ss_pred --------ChhHH----HHHhcC--CCCCEEEEeCcCcccHHHHHHHHHC
Confidence 11221 233332 4589999999876555556666653
No 184
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=78.62 E-value=23 Score=27.76 Aligned_cols=56 Identities=21% Similarity=0.176 Sum_probs=39.4
Q ss_pred CeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCH-HHHHHHHHcCCEEEEeCCC
Q 028618 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSL-ERRIILRAFGAELVLTDPA 125 (206)
Q Consensus 70 ~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~-~~~~~~~~~Ga~v~~~~~~ 125 (206)
++.+|+..+|..|..++......|.+++++....... .....++..|.++..+..|
T Consensus 6 ~~ilItGasg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D 62 (246)
T PRK05653 6 KTALVTGASRGIGRAIALRLAADGAKVVIYDSNEEAAEALAAELRAAGGEARVLVFD 62 (246)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHHHHhcCCceEEEEcc
Confidence 3678889999999999999988999976665443222 2234455678777776544
No 185
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=78.45 E-value=21 Score=28.16 Aligned_cols=55 Identities=15% Similarity=0.181 Sum_probs=38.3
Q ss_pred eEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCC-HHHHHHHHHcCCEEEEeCCC
Q 028618 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLTDPA 125 (206)
Q Consensus 71 ~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~-~~~~~~~~~~Ga~v~~~~~~ 125 (206)
..+|+..+|..|.+++......|.+++++...... ......++..|.++..+..|
T Consensus 9 ~vlVtG~sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D 64 (239)
T PRK07666 9 NALITGAGRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAYGVKVVIATAD 64 (239)
T ss_pred EEEEEcCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCeEEEEECC
Confidence 67888899999999999988899987777654321 12233445667777766554
No 186
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=78.43 E-value=21 Score=29.73 Aligned_cols=57 Identities=25% Similarity=0.283 Sum_probs=42.0
Q ss_pred CeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHH--HHHHHHcCCEEEEeCCCC
Q 028618 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLER--RIILRAFGAELVLTDPAK 126 (206)
Q Consensus 70 ~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~--~~~~~~~Ga~v~~~~~~~ 126 (206)
+..+||..|+.-|.++|...++.|.+++++......-.. .+.-+.+|.+|...+-|-
T Consensus 7 ~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~~~~v~v~vi~~DL 65 (265)
T COG0300 7 KTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELEDKTGVEVEVIPADL 65 (265)
T ss_pred cEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHHhhCceEEEEECcC
Confidence 478999999999999999999999999999887543222 222245677776666553
No 187
>COG1751 Uncharacterized conserved protein [Function unknown]
Probab=78.30 E-value=22 Score=27.12 Aligned_cols=75 Identities=17% Similarity=0.281 Sum_probs=53.1
Q ss_pred CCCChhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCC---------CCCHHHHHHHHH
Q 028618 44 PCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPA---------SMSLERRIILRA 114 (206)
Q Consensus 44 ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~---------~~~~~~~~~~~~ 114 (206)
|+--+-++.....+.+|.+-|. +..+|.+|+|.+++-++-+..- .+++++|.-- ..+++-.+.++.
T Consensus 7 pG~eNT~~tle~a~erA~elgi----k~~vVAS~tG~tA~k~lemveg-~lkvVvVthh~Gf~e~g~~e~~~E~~~~L~e 81 (186)
T COG1751 7 PGKENTDETLEIAVERAKELGI----KHIVVASSTGYTALKALEMVEG-DLKVVVVTHHAGFEEKGTQEMDEEVRKELKE 81 (186)
T ss_pred CcccchHHHHHHHHHHHHhcCc----ceEEEEecccHHHHHHHHhccc-CceEEEEEeecccccCCceecCHHHHHHHHH
Confidence 4445678888888999998886 2456666778888776665533 2787777531 236677888999
Q ss_pred cCCEEEEeC
Q 028618 115 FGAELVLTD 123 (206)
Q Consensus 115 ~Ga~v~~~~ 123 (206)
.|++|..-.
T Consensus 82 rGa~v~~~s 90 (186)
T COG1751 82 RGAKVLTQS 90 (186)
T ss_pred cCceeeeeh
Confidence 999997654
No 188
>PRK06197 short chain dehydrogenase; Provisional
Probab=78.27 E-value=37 Score=28.06 Aligned_cols=33 Identities=15% Similarity=0.187 Sum_probs=26.7
Q ss_pred CeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCC
Q 028618 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPA 102 (206)
Q Consensus 70 ~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~ 102 (206)
+..+|+..+|--|.++|......|.+++++...
T Consensus 17 k~vlItGas~gIG~~~a~~l~~~G~~vi~~~r~ 49 (306)
T PRK06197 17 RVAVVTGANTGLGYETAAALAAKGAHVVLAVRN 49 (306)
T ss_pred CEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCC
Confidence 367888888999999998888889887777654
No 189
>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=78.25 E-value=28 Score=30.67 Aligned_cols=57 Identities=12% Similarity=0.133 Sum_probs=40.9
Q ss_pred CCeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCC
Q 028618 69 GESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPA 125 (206)
Q Consensus 69 ~~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~ 125 (206)
++..+|+..+|.-|.++|......|.+++++-.....+...+.....+.+.+.++-.
T Consensus 210 g~~vlItGasggIG~~la~~l~~~Ga~vi~~~~~~~~~~l~~~~~~~~~~~~~~Dv~ 266 (450)
T PRK08261 210 GKVALVTGAARGIGAAIAEVLARDGAHVVCLDVPAAGEALAAVANRVGGTALALDIT 266 (450)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCCEEEEEeCCccHHHHHHHHHHcCCeEEEEeCC
Confidence 346788888899999999999999999877654333333334445678777777755
No 190
>PRK07806 short chain dehydrogenase; Provisional
Probab=78.15 E-value=26 Score=27.75 Aligned_cols=56 Identities=13% Similarity=0.126 Sum_probs=38.3
Q ss_pred CeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCC--HHHHHHHHHcCCEEEEeCCC
Q 028618 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS--LERRIILRAFGAELVLTDPA 125 (206)
Q Consensus 70 ~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~--~~~~~~~~~~Ga~v~~~~~~ 125 (206)
+..+|+..+|.-|.+++......|.+++++...... ......++..|.++..+..|
T Consensus 7 k~vlItGasggiG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D 64 (248)
T PRK07806 7 KTALVTGSSRGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAAGGRASAVGAD 64 (248)
T ss_pred cEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhcCCceEEEEcC
Confidence 367888999999999999998899998877653321 11123345567766665544
No 191
>PRK07478 short chain dehydrogenase; Provisional
Probab=78.13 E-value=18 Score=28.84 Aligned_cols=72 Identities=15% Similarity=0.062 Sum_probs=44.3
Q ss_pred CeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCC-HHHHHHHHHcCCEEEEeCCCCC-hHHHHHHHHHHHHh
Q 028618 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLTDPAKG-MKGAVQKAEEILAK 141 (206)
Q Consensus 70 ~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~-~~~~~~~~~~Ga~v~~~~~~~~-~~~~~~~a~~~~~~ 141 (206)
+..+|+..+|.-|.++|......|.+++++...... ....+.++..|.++..+..|-. .++..+...+..++
T Consensus 7 k~~lItGas~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~ 80 (254)
T PRK07478 7 KVAIITGASSGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAEGGEAVALAGDVRDEAYAKALVALAVER 80 (254)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHHHHHHh
Confidence 367888888999999999999999987776543211 1223345566777766654422 23333334444443
No 192
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=77.93 E-value=17 Score=30.69 Aligned_cols=57 Identities=18% Similarity=0.219 Sum_probs=40.0
Q ss_pred HcCCCCCCCeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 028618 62 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 121 (206)
Q Consensus 62 ~~g~~~~~~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~ 121 (206)
+.....++++.+|. ..|..|.+++..|+.+|.+.++.+. .++.+++.++.+|++-++
T Consensus 154 ~~~~~~~g~~vlV~-G~g~vG~~~~~~a~~~G~~~v~~~~--~~~~~~~~~~~~Ga~~~i 210 (347)
T PRK10309 154 HLAQGCEGKNVIII-GAGTIGLLAIQCAVALGAKSVTAID--INSEKLALAKSLGAMQTF 210 (347)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEC--CCHHHHHHHHHcCCceEe
Confidence 34455677666666 5799999999999999998554442 245667777888875443
No 193
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=77.85 E-value=44 Score=28.66 Aligned_cols=52 Identities=19% Similarity=0.231 Sum_probs=43.2
Q ss_pred EEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHH-cCCEEEEeCCC
Q 028618 72 VLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRA-FGAELVLTDPA 125 (206)
Q Consensus 72 ~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~-~Ga~v~~~~~~ 125 (206)
+++....|.-|+..+..++.+|...++++ +.++.|++..+. .|++++..+..
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~--d~~~~Rl~~A~~~~g~~~~~~~~~ 223 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVV--DRSPERLELAKEAGGADVVVNPSE 223 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEe--CCCHHHHHHHHHhCCCeEeecCcc
Confidence 68889999999999999999999888887 556788888877 77887766554
No 194
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=77.77 E-value=20 Score=30.78 Aligned_cols=57 Identities=16% Similarity=0.239 Sum_probs=40.3
Q ss_pred HcCCCCCCCeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 028618 62 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 121 (206)
Q Consensus 62 ~~g~~~~~~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~ 121 (206)
+...+++|++.+|. .+|..|.+++..|+.+|.+-++.+ +.++.+++.++.+|++.++
T Consensus 179 ~~~~~~~g~~VlV~-G~G~iG~~a~q~Ak~~G~~~Vi~~--~~~~~~~~~a~~~Ga~~~i 235 (368)
T TIGR02818 179 NTAKVEEGDTVAVF-GLGGIGLSVIQGARMAKASRIIAI--DINPAKFELAKKLGATDCV 235 (368)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEE--cCCHHHHHHHHHhCCCeEE
Confidence 44556777666666 469999999999999999433333 3355677888889986544
No 195
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=77.70 E-value=11 Score=32.63 Aligned_cols=55 Identities=33% Similarity=0.355 Sum_probs=41.7
Q ss_pred CCCCCCCeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 028618 64 GLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 121 (206)
Q Consensus 64 g~~~~~~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~ 121 (206)
..+.+++..+|...+|..|.+++..|+.+|.+.+++. .++.+.+.++.+|++.+.
T Consensus 189 ~~~~~g~~vlV~ga~g~iG~a~~~lak~~G~~vv~~~---~s~~~~~~~~~~G~~~~i 243 (393)
T cd08246 189 NTVKPGDNVLIWGASGGLGSMAIQLARAAGANPVAVV---SSEEKAEYCRALGAEGVI 243 (393)
T ss_pred ccCCCCCEEEEECCCcHHHHHHHHHHHHcCCeEEEEe---CCHHHHHHHHHcCCCEEE
Confidence 3456666666766679999999999999999976553 356778888889986544
No 196
>PRK05876 short chain dehydrogenase; Provisional
Probab=77.59 E-value=22 Score=29.15 Aligned_cols=56 Identities=14% Similarity=0.053 Sum_probs=37.8
Q ss_pred CeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCC-HHHHHHHHHcCCEEEEeCCC
Q 028618 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLTDPA 125 (206)
Q Consensus 70 ~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~-~~~~~~~~~~Ga~v~~~~~~ 125 (206)
+..+|+..+|--|.++|......|.+++++...... ....+.++..|.++..+..|
T Consensus 7 k~vlVTGas~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~~~~~~~~~~~D 63 (275)
T PRK05876 7 RGAVITGGASGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRAEGFDVHGVMCD 63 (275)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEeCC
Confidence 467899999999999999999999987665433211 12233445567777665544
No 197
>PRK08303 short chain dehydrogenase; Provisional
Probab=77.59 E-value=22 Score=29.76 Aligned_cols=72 Identities=15% Similarity=0.101 Sum_probs=43.7
Q ss_pred CeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCC-----------CHHHHHHHHHcCCEEEEeCCCCC-hHHHHHHHHH
Q 028618 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASM-----------SLERRIILRAFGAELVLTDPAKG-MKGAVQKAEE 137 (206)
Q Consensus 70 ~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~-----------~~~~~~~~~~~Ga~v~~~~~~~~-~~~~~~~a~~ 137 (206)
+..+|+..++--|.++|......|.+++++..... -....+.++..|.+++.+..|-. .++......+
T Consensus 9 k~~lITGgs~GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~~~ 88 (305)
T PRK08303 9 KVALVAGATRGAGRGIAVELGAAGATVYVTGRSTRARRSEYDRPETIEETAELVTAAGGRGIAVQVDHLVPEQVRALVER 88 (305)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEecccccccccccccchHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHH
Confidence 46788888888999999999999998777654321 11223445666776665543321 3333444444
Q ss_pred HHHh
Q 028618 138 ILAK 141 (206)
Q Consensus 138 ~~~~ 141 (206)
..++
T Consensus 89 ~~~~ 92 (305)
T PRK08303 89 IDRE 92 (305)
T ss_pred HHHH
Confidence 4443
No 198
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=77.54 E-value=21 Score=29.49 Aligned_cols=57 Identities=26% Similarity=0.355 Sum_probs=41.1
Q ss_pred HHcCCCCCCCeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 028618 61 EAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 121 (206)
Q Consensus 61 ~~~g~~~~~~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~ 121 (206)
.+.+.+.++++.+|.+ +|..|.+++..|+.+|.+++++ ..++.+.+.++.+|+..+.
T Consensus 148 ~~~~~~~~g~~vlV~g-~g~vg~~~~q~a~~~G~~vi~~---~~~~~~~~~~~~~g~~~~~ 204 (319)
T cd08242 148 LEQVPITPGDKVAVLG-DGKLGLLIAQVLALTGPDVVLV---GRHSEKLALARRLGVETVL 204 (319)
T ss_pred HHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCeEEEE---cCCHHHHHHHHHcCCcEEe
Confidence 3455667776666664 7899999999999999995444 2335677777788886543
No 199
>COG0623 FabI Enoyl-[acyl-carrier-protein]
Probab=77.49 E-value=15 Score=30.15 Aligned_cols=69 Identities=20% Similarity=0.244 Sum_probs=42.9
Q ss_pred HHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHHHHhHHHHHHhhhCCCCCEEEEccC
Q 028618 109 RIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIG 184 (206)
Q Consensus 109 ~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~q~~~~~d~vv~~vG 184 (206)
.+.+...||++.+.-.. +....+.++++++. +..++-+.|-.+. +....+..+|-++. +.+|.+|.+++
T Consensus 25 Ak~l~~~GAeL~fTy~~---e~l~krv~~la~~~-~s~~v~~cDV~~d--~~i~~~f~~i~~~~-g~lD~lVHsIa 93 (259)
T COG0623 25 AKALAEQGAELAFTYQG---ERLEKRVEELAEEL-GSDLVLPCDVTND--ESIDALFATIKKKW-GKLDGLVHSIA 93 (259)
T ss_pred HHHHHHcCCEEEEEecc---HHHHHHHHHHHhhc-cCCeEEecCCCCH--HHHHHHHHHHHHhh-CcccEEEEEec
Confidence 35667788888887654 24466677777776 3344444443332 34555566665655 57888888876
No 200
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=77.31 E-value=19 Score=30.70 Aligned_cols=56 Identities=18% Similarity=0.146 Sum_probs=39.6
Q ss_pred HcCCCCCCCeEEEeeCCCchHHHHHHHHHHCCCc-EEEEeCCCCCHHHHHHHHHcCCEEEE
Q 028618 62 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYR-LIITMPASMSLERRIILRAFGAELVL 121 (206)
Q Consensus 62 ~~g~~~~~~~~vv~aSsGN~g~alA~~a~~~g~~-~~ivvp~~~~~~~~~~~~~~Ga~v~~ 121 (206)
+...+.+|+..+|. .+|..|.+++..|+.+|.. ++++.. .+.+++.++.+|++.+.
T Consensus 181 ~~~~~~~g~~VlV~-G~g~vG~~a~q~ak~~G~~~vi~~~~---~~~~~~~~~~~Ga~~~i 237 (369)
T cd08301 181 NVAKVKKGSTVAIF-GLGAVGLAVAEGARIRGASRIIGVDL---NPSKFEQAKKFGVTEFV 237 (369)
T ss_pred hhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEcC---CHHHHHHHHHcCCceEE
Confidence 33456777666665 4699999999999999984 444422 34677788889986554
No 201
>PLN02740 Alcohol dehydrogenase-like
Probab=77.29 E-value=46 Score=28.61 Aligned_cols=56 Identities=21% Similarity=0.189 Sum_probs=40.4
Q ss_pred HcCCCCCCCeEEEeeCCCchHHHHHHHHHHCCCc-EEEEeCCCCCHHHHHHHHHcCCEEEE
Q 028618 62 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYR-LIITMPASMSLERRIILRAFGAELVL 121 (206)
Q Consensus 62 ~~g~~~~~~~~vv~aSsGN~g~alA~~a~~~g~~-~~ivvp~~~~~~~~~~~~~~Ga~v~~ 121 (206)
+...+.+|+..+|.+ .|.-|.+++..|+.+|.+ ++++ +.++.+++..+.+|++.+.
T Consensus 192 ~~~~~~~g~~VlV~G-~G~vG~~a~q~ak~~G~~~Vi~~---~~~~~r~~~a~~~Ga~~~i 248 (381)
T PLN02740 192 NTANVQAGSSVAIFG-LGAVGLAVAEGARARGASKIIGV---DINPEKFEKGKEMGITDFI 248 (381)
T ss_pred hccCCCCCCEEEEEC-CCHHHHHHHHHHHHCCCCcEEEE---cCChHHHHHHHHcCCcEEE
Confidence 445567776666654 699999999999999985 5444 2245678888889986544
No 202
>PRK09134 short chain dehydrogenase; Provisional
Probab=77.23 E-value=28 Score=27.85 Aligned_cols=56 Identities=18% Similarity=0.223 Sum_probs=38.4
Q ss_pred CeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCH--HHHHHHHHcCCEEEEeCCC
Q 028618 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSL--ERRIILRAFGAELVLTDPA 125 (206)
Q Consensus 70 ~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~--~~~~~~~~~Ga~v~~~~~~ 125 (206)
+..+|+..+|.-|.+++......|.++++....+... .-...++..|.++..+..|
T Consensus 10 k~vlItGas~giG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 67 (258)
T PRK09134 10 RAALVTGAARRIGRAIALDLAAHGFDVAVHYNRSRDEAEALAAEIRALGRRAVALQAD 67 (258)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCeEEEEEcC
Confidence 3678999999999999999999999887765433211 1223344557777665544
No 203
>PRK06194 hypothetical protein; Provisional
Probab=77.20 E-value=26 Score=28.49 Aligned_cols=56 Identities=21% Similarity=0.221 Sum_probs=38.3
Q ss_pred CeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCC-HHHHHHHHHcCCEEEEeCCC
Q 028618 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLTDPA 125 (206)
Q Consensus 70 ~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~-~~~~~~~~~~Ga~v~~~~~~ 125 (206)
+..+|+..+|.-|.++|......|.+++++-..... ......+...|.++..+..|
T Consensus 7 k~vlVtGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D 63 (287)
T PRK06194 7 KVAVITGAASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQGAEVLGVRTD 63 (287)
T ss_pred CEEEEeCCccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCCeEEEEECC
Confidence 367899999999999999999999987766543211 22233444557777666554
No 204
>PRK12744 short chain dehydrogenase; Provisional
Probab=77.10 E-value=21 Score=28.56 Aligned_cols=56 Identities=25% Similarity=0.127 Sum_probs=37.7
Q ss_pred CeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCC--CC---HHHHHHHHHcCCEEEEeCCC
Q 028618 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPAS--MS---LERRIILRAFGAELVLTDPA 125 (206)
Q Consensus 70 ~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~--~~---~~~~~~~~~~Ga~v~~~~~~ 125 (206)
+..+|+..+|.-|.++|......|.+++++.... .. ....+.++..+.++..+..|
T Consensus 9 k~vlItGa~~gIG~~~a~~l~~~G~~vv~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D 69 (257)
T PRK12744 9 KVVLIAGGAKNLGGLIARDLAAQGAKAVAIHYNSAASKADAEETVAAVKAAGAKAVAFQAD 69 (257)
T ss_pred cEEEEECCCchHHHHHHHHHHHCCCcEEEEecCCccchHHHHHHHHHHHHhCCcEEEEecC
Confidence 3678888899999999999988999977665321 11 12233445567777665544
No 205
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=76.99 E-value=30 Score=28.79 Aligned_cols=51 Identities=22% Similarity=0.304 Sum_probs=37.0
Q ss_pred eEEEe-eCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 028618 71 SVLIE-PTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 124 (206)
Q Consensus 71 ~~vv~-aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~ 124 (206)
..++. ..+|..|.++...|+.+|.+++++.+ ++.+.+.++.+|++-++...
T Consensus 145 ~vlv~~~g~g~vG~~a~q~a~~~G~~vi~~~~---~~~~~~~~~~~g~~~~i~~~ 196 (324)
T cd08291 145 KAVVHTAAASALGRMLVRLCKADGIKVINIVR---RKEQVDLLKKIGAEYVLNSS 196 (324)
T ss_pred cEEEEccCccHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCcEEEECC
Confidence 44554 67788999999999999998555433 45678888889987655443
No 206
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=76.88 E-value=26 Score=27.84 Aligned_cols=55 Identities=24% Similarity=0.311 Sum_probs=38.5
Q ss_pred eEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCC--HHHHHHHHHcCCEEEEeCCC
Q 028618 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS--LERRIILRAFGAELVLTDPA 125 (206)
Q Consensus 71 ~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~--~~~~~~~~~~Ga~v~~~~~~ 125 (206)
..+|+..+|.-|.++|......|.+++++.....+ ....+.++..+.++..+..|
T Consensus 4 ~vlItG~sg~iG~~la~~L~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D 60 (256)
T PRK12745 4 VALVTGGRRGIGLGIARALAAAGFDLAINDRPDDEELAATQQELRALGVEVIFFPAD 60 (256)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEecCchhHHHHHHHHHHhcCCceEEEEec
Confidence 57888999999999999998999988777644322 22344455567766666544
No 207
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=76.88 E-value=17 Score=31.07 Aligned_cols=57 Identities=21% Similarity=0.311 Sum_probs=39.7
Q ss_pred HcCCCCCCCeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 028618 62 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 121 (206)
Q Consensus 62 ~~g~~~~~~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~ 121 (206)
+...++++++.+|. .+|..|++++..|+.+|.+.++.+ ..++.+++.++.+|++.++
T Consensus 180 ~~~~~~~g~~VlV~-G~G~vG~~a~~~ak~~G~~~vi~~--~~~~~~~~~~~~lGa~~~i 236 (368)
T cd08300 180 NTAKVEPGSTVAVF-GLGAVGLAVIQGAKAAGASRIIGI--DINPDKFELAKKFGATDCV 236 (368)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEE--eCCHHHHHHHHHcCCCEEE
Confidence 34556777666666 469999999999999999533333 2244567777888886544
No 208
>COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism]
Probab=76.85 E-value=14 Score=31.33 Aligned_cols=56 Identities=18% Similarity=0.141 Sum_probs=41.3
Q ss_pred CeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCC--HHHHHHH----HHcCCEEEEeCCC
Q 028618 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS--LERRIIL----RAFGAELVLTDPA 125 (206)
Q Consensus 70 ~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~--~~~~~~~----~~~Ga~v~~~~~~ 125 (206)
.+...+.-+.|-+.++-.+|..+|+.+++..|+... +.-.+.+ +.-|+++.++...
T Consensus 154 ~k~a~vGDgNNv~nSl~~~~a~~G~dv~ia~Pk~~~p~~~~~~~a~~~a~~~g~~i~~t~d~ 215 (310)
T COG0078 154 LKLAYVGDGNNVANSLLLAAAKLGMDVRIATPKGYEPDPEVVEKAKENAKESGGKITLTEDP 215 (310)
T ss_pred cEEEEEcCcchHHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHHHHHHHHhcCCeEEEecCH
Confidence 355566667899999999999999999999999743 3333333 4458888887653
No 209
>PRK07890 short chain dehydrogenase; Provisional
Probab=76.72 E-value=23 Score=28.18 Aligned_cols=56 Identities=14% Similarity=0.133 Sum_probs=37.7
Q ss_pred CeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCC-HHHHHHHHHcCCEEEEeCCC
Q 028618 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLTDPA 125 (206)
Q Consensus 70 ~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~-~~~~~~~~~~Ga~v~~~~~~ 125 (206)
++.+|+..+|.-|.++|......|.+++++...... +.....++..|.++..+..|
T Consensus 6 k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D 62 (258)
T PRK07890 6 KVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDLGRRALAVPTD 62 (258)
T ss_pred CEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEecC
Confidence 478899999999999999999999987777543211 11223334456666555544
No 210
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=76.67 E-value=19 Score=30.70 Aligned_cols=56 Identities=18% Similarity=0.201 Sum_probs=39.9
Q ss_pred HcCCCCCCCeEEEeeCCCchHHHHHHHHHHCCCc-EEEEeCCCCCHHHHHHHHHcCCEEEE
Q 028618 62 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYR-LIITMPASMSLERRIILRAFGAELVL 121 (206)
Q Consensus 62 ~~g~~~~~~~~vv~aSsGN~g~alA~~a~~~g~~-~~ivvp~~~~~~~~~~~~~~Ga~v~~ 121 (206)
+.+.+.+|++.+|. .+|..|.+++..|+.+|.. ++++.+ .+.+++.++.+|++-++
T Consensus 178 ~~~~~~~g~~vlV~-G~g~vG~~~~~~a~~~G~~~Vi~~~~---~~~~~~~~~~~ga~~~i 234 (365)
T cd08277 178 NTAKVEPGSTVAVF-GLGAVGLSAIMGAKIAGASRIIGVDI---NEDKFEKAKEFGATDFI 234 (365)
T ss_pred hhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEeC---CHHHHHHHHHcCCCcEe
Confidence 44567777666666 5699999999999999985 444433 45677777888885443
No 211
>PRK05866 short chain dehydrogenase; Provisional
Probab=76.66 E-value=19 Score=29.87 Aligned_cols=55 Identities=11% Similarity=-0.002 Sum_probs=37.5
Q ss_pred eEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCC-HHHHHHHHHcCCEEEEeCCC
Q 028618 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLTDPA 125 (206)
Q Consensus 71 ~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~-~~~~~~~~~~Ga~v~~~~~~ 125 (206)
..+|++.+|--|.++|......|.+++++...... +...+.+...|.++..+..|
T Consensus 42 ~vlItGasggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~~~~~~~~~~D 97 (293)
T PRK05866 42 RILLTGASSGIGEAAAEQFARRGATVVAVARREDLLDAVADRITRAGGDAMAVPCD 97 (293)
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEcc
Confidence 67888999999999999998999988777654321 12223444456666555444
No 212
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=76.62 E-value=24 Score=27.86 Aligned_cols=56 Identities=14% Similarity=0.119 Sum_probs=39.2
Q ss_pred CeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCC-HHHHHHHHHcCCEEEEeCCC
Q 028618 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLTDPA 125 (206)
Q Consensus 70 ~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~-~~~~~~~~~~Ga~v~~~~~~ 125 (206)
++.+|+..+|..|.+++......|.+++++...... ....+.++..+.++..+..+
T Consensus 7 ~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D 63 (251)
T PRK12826 7 RVALVTGAARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAAGGKARARQVD 63 (251)
T ss_pred CEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECC
Confidence 367888999999999999998899987777654221 22334456667666666544
No 213
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=76.58 E-value=21 Score=28.50 Aligned_cols=56 Identities=14% Similarity=0.109 Sum_probs=38.1
Q ss_pred CeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCC-HHHHHHHHHcCCEEEEeCCC
Q 028618 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLTDPA 125 (206)
Q Consensus 70 ~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~-~~~~~~~~~~Ga~v~~~~~~ 125 (206)
+..+|+..+|..|.++|......|.+++++...... ......++..|.++..+..|
T Consensus 12 k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D 68 (256)
T PRK06124 12 QVALVTGSARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAGGAAEALAFD 68 (256)
T ss_pred CEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEcc
Confidence 478888899999999999988899987777654211 12233455567655555443
No 214
>PRK06949 short chain dehydrogenase; Provisional
Probab=76.54 E-value=17 Score=29.01 Aligned_cols=33 Identities=15% Similarity=0.221 Sum_probs=28.0
Q ss_pred CeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCC
Q 028618 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPA 102 (206)
Q Consensus 70 ~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~ 102 (206)
+..+|+..+|.-|.++|......|.+++++...
T Consensus 10 k~ilItGasg~IG~~~a~~l~~~G~~Vi~~~r~ 42 (258)
T PRK06949 10 KVALVTGASSGLGARFAQVLAQAGAKVVLASRR 42 (258)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 477888999999999999999999987777554
No 215
>PRK07454 short chain dehydrogenase; Provisional
Probab=76.45 E-value=19 Score=28.40 Aligned_cols=55 Identities=18% Similarity=0.137 Sum_probs=37.4
Q ss_pred eEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCC-HHHHHHHHHcCCEEEEeCCC
Q 028618 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLTDPA 125 (206)
Q Consensus 71 ~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~-~~~~~~~~~~Ga~v~~~~~~ 125 (206)
..+|+..+|..|.+++......|.+++++...... ....+.++..+.++..+..|
T Consensus 8 ~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D 63 (241)
T PRK07454 8 RALITGASSGIGKATALAFAKAGWDLALVARSQDALEALAAELRSTGVKAAAYSID 63 (241)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhCCCcEEEEEcc
Confidence 67888889999999999999999988777643211 12223345556666555443
No 216
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=76.41 E-value=23 Score=27.96 Aligned_cols=56 Identities=18% Similarity=0.084 Sum_probs=38.3
Q ss_pred CeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCC-HHHHHHHHHcCCEEEEeCCC
Q 028618 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLTDPA 125 (206)
Q Consensus 70 ~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~-~~~~~~~~~~Ga~v~~~~~~ 125 (206)
+..+|+..+|.-|.++|......|.+++++...... ....+.++..|.++..+..|
T Consensus 6 ~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D 62 (253)
T PRK08217 6 KVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGALGTEVRGYAAN 62 (253)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcC
Confidence 367888888999999999998899987666543211 22234455668777665544
No 217
>PRK06483 dihydromonapterin reductase; Provisional
Probab=76.37 E-value=35 Score=26.79 Aligned_cols=53 Identities=23% Similarity=0.273 Sum_probs=38.9
Q ss_pred eEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCC
Q 028618 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPA 125 (206)
Q Consensus 71 ~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~ 125 (206)
..+|+..+|--|.++|......|.+++++-.... ...+.++..|+..+.++-.
T Consensus 4 ~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~--~~~~~~~~~~~~~~~~D~~ 56 (236)
T PRK06483 4 PILITGAGQRIGLALAWHLLAQGQPVIVSYRTHY--PAIDGLRQAGAQCIQADFS 56 (236)
T ss_pred eEEEECCCChHHHHHHHHHHHCCCeEEEEeCCch--hHHHHHHHcCCEEEEcCCC
Confidence 6788899999999999999899998887754332 2244556678777766654
No 218
>PRK12938 acetyacetyl-CoA reductase; Provisional
Probab=76.21 E-value=21 Score=28.25 Aligned_cols=56 Identities=7% Similarity=0.159 Sum_probs=38.7
Q ss_pred CeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCC--HHHHHHHHHcCCEEEEeCCC
Q 028618 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS--LERRIILRAFGAELVLTDPA 125 (206)
Q Consensus 70 ~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~--~~~~~~~~~~Ga~v~~~~~~ 125 (206)
+..+|+..+|.-|.++|......|.+++++...... ....+.++..|.++.....|
T Consensus 4 k~~lVtG~s~giG~~~a~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 61 (246)
T PRK12938 4 RIAYVTGGMGGIGTSICQRLHKDGFKVVAGCGPNSPRRVKWLEDQKALGFDFIASEGN 61 (246)
T ss_pred CEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCChHHHHHHHHHHHhcCCcEEEEEcC
Confidence 367899999999999999999999887665433221 22244455678877755443
No 219
>PRK06181 short chain dehydrogenase; Provisional
Probab=76.03 E-value=22 Score=28.51 Aligned_cols=55 Identities=20% Similarity=0.196 Sum_probs=38.0
Q ss_pred eEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCC-HHHHHHHHHcCCEEEEeCCC
Q 028618 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLTDPA 125 (206)
Q Consensus 71 ~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~-~~~~~~~~~~Ga~v~~~~~~ 125 (206)
..+|+..+|..|.+++......|.+++++...... ....+.++..|.++..+..|
T Consensus 3 ~vlVtGasg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D 58 (263)
T PRK06181 3 VVIITGASEGIGRALAVRLARAGAQLVLAARNETRLASLAQELADHGGEALVVPTD 58 (263)
T ss_pred EEEEecCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcc
Confidence 57888899999999999998999988777654211 12233455567776665544
No 220
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=76.02 E-value=39 Score=29.08 Aligned_cols=64 Identities=17% Similarity=0.216 Sum_probs=51.3
Q ss_pred HHHHcCCCCCCCeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCC
Q 028618 59 DAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPA 125 (206)
Q Consensus 59 ~a~~~g~~~~~~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~ 125 (206)
.|.+++.+++| ..++....|.-|+..-..|+.+|-+=++++ +..+.+++..+.+||+++.-...
T Consensus 160 HAcr~~~vk~G-s~vLV~GAGPIGl~t~l~Aka~GA~~VVi~--d~~~~Rle~Ak~~Ga~~~~~~~~ 223 (354)
T KOG0024|consen 160 HACRRAGVKKG-SKVLVLGAGPIGLLTGLVAKAMGASDVVIT--DLVANRLELAKKFGATVTDPSSH 223 (354)
T ss_pred hhhhhcCcccC-CeEEEECCcHHHHHHHHHHHHcCCCcEEEe--ecCHHHHHHHHHhCCeEEeeccc
Confidence 46667777888 567889999999999999999998777774 45677889999999999876543
No 221
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=75.94 E-value=26 Score=28.57 Aligned_cols=55 Identities=25% Similarity=0.373 Sum_probs=39.4
Q ss_pred CCCCCCCeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 028618 64 GLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 121 (206)
Q Consensus 64 g~~~~~~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~ 121 (206)
+.+.+++..+|...+|..|.++...|+..|.+++.+.+. +.+.+.++.+|++-+.
T Consensus 138 ~~~~~g~~vlV~ga~g~~g~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~~~~~ 192 (320)
T cd08243 138 LGLQPGDTLLIRGGTSSVGLAALKLAKALGATVTATTRS---PERAALLKELGADEVV 192 (320)
T ss_pred cCCCCCCEEEEEcCCChHHHHHHHHHHHcCCEEEEEeCC---HHHHHHHHhcCCcEEE
Confidence 345566677777778999999999999999996555433 3456666777775443
No 222
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=75.74 E-value=13 Score=33.05 Aligned_cols=53 Identities=21% Similarity=0.265 Sum_probs=38.3
Q ss_pred CCCCCCCeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEE
Q 028618 64 GLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 120 (206)
Q Consensus 64 g~~~~~~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~ 120 (206)
+...+| ++++....|.-|+.+|..++.+|.+++++ +..+.+....+.+|++++
T Consensus 197 ~~~l~G-ktVvViG~G~IG~~va~~ak~~Ga~ViV~---d~d~~R~~~A~~~G~~~~ 249 (413)
T cd00401 197 DVMIAG-KVAVVAGYGDVGKGCAQSLRGQGARVIVT---EVDPICALQAAMEGYEVM 249 (413)
T ss_pred CCCCCC-CEEEEECCCHHHHHHHHHHHHCCCEEEEE---ECChhhHHHHHhcCCEEc
Confidence 444455 57888999999999999999999976554 223455666667777544
No 223
>PRK05867 short chain dehydrogenase; Provisional
Probab=75.69 E-value=23 Score=28.27 Aligned_cols=56 Identities=14% Similarity=0.039 Sum_probs=37.4
Q ss_pred CeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCC-HHHHHHHHHcCCEEEEeCCC
Q 028618 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLTDPA 125 (206)
Q Consensus 70 ~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~-~~~~~~~~~~Ga~v~~~~~~ 125 (206)
+..+|+..+|.-|.++|......|.+++++...... +...+.++..|.++..+..|
T Consensus 10 k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D 66 (253)
T PRK05867 10 KRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSGGKVVPVCCD 66 (253)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 367888999999999999999999987766433211 12233445567676655443
No 224
>PRK06701 short chain dehydrogenase; Provisional
Probab=75.60 E-value=31 Score=28.53 Aligned_cols=56 Identities=16% Similarity=0.141 Sum_probs=39.9
Q ss_pred CeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCC--HHHHHHHHHcCCEEEEeCCC
Q 028618 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS--LERRIILRAFGAELVLTDPA 125 (206)
Q Consensus 70 ~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~--~~~~~~~~~~Ga~v~~~~~~ 125 (206)
+..+|+..+|.-|.++|......|.+++++...... ....+.++..|.++..+..|
T Consensus 47 k~iLItGasggIG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~D 104 (290)
T PRK06701 47 KVALITGGDSGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKEGVKCLLIPGD 104 (290)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcCCeEEEEEcc
Confidence 367888899999999999999999998777654322 23334456667777666544
No 225
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=75.56 E-value=32 Score=27.10 Aligned_cols=55 Identities=22% Similarity=0.262 Sum_probs=36.4
Q ss_pred CeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHH-HHHHHHcCCEEEEeCCC
Q 028618 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLER-RIILRAFGAELVLTDPA 125 (206)
Q Consensus 70 ~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~-~~~~~~~Ga~v~~~~~~ 125 (206)
+..+|+..+|..|.+++......|.+++++......... ...++. +.++..+..+
T Consensus 6 ~~vlItGasg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-~~~~~~~~~D 61 (251)
T PRK07231 6 KVAIVTGASSGIGEGIARRFAAEGARVVVTDRNEEAAERVAAEILA-GGRAIAVAAD 61 (251)
T ss_pred cEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhc-CCeEEEEECC
Confidence 367899999999999999999999997777554322111 222222 4556555444
No 226
>PRK08017 oxidoreductase; Provisional
Probab=75.50 E-value=34 Score=27.16 Aligned_cols=52 Identities=23% Similarity=0.300 Sum_probs=39.0
Q ss_pred eEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCC
Q 028618 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPA 125 (206)
Q Consensus 71 ~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~ 125 (206)
+.+|++.+|.-|.++|......|.+++++... ..+.+.++..|++.+.++-.
T Consensus 4 ~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~---~~~~~~~~~~~~~~~~~D~~ 55 (256)
T PRK08017 4 SVLITGCSSGIGLEAALELKRRGYRVLAACRK---PDDVARMNSLGFTGILLDLD 55 (256)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCC---HHHhHHHHhCCCeEEEeecC
Confidence 57888889999999999998899987666443 34455566678877776654
No 227
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=75.47 E-value=33 Score=27.46 Aligned_cols=56 Identities=14% Similarity=0.173 Sum_probs=39.4
Q ss_pred CeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCC--HHHHHHHHHcCCEEEEeCCC
Q 028618 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS--LERRIILRAFGAELVLTDPA 125 (206)
Q Consensus 70 ~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~--~~~~~~~~~~Ga~v~~~~~~ 125 (206)
+..+|+..+|.-|.++|......|.++++......+ ....+.++..|.++..+..|
T Consensus 8 k~~lItGa~~gIG~~ia~~l~~~G~~vvi~~~~~~~~~~~~~~~l~~~~~~~~~~~~D 65 (261)
T PRK08936 8 KVVVITGGSTGLGRAMAVRFGKEKAKVVINYRSDEEEANDVAEEIKKAGGEAIAVKGD 65 (261)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHcCCeEEEEEec
Confidence 467899999999999999999999988776654322 22234455667777655433
No 228
>PRK07035 short chain dehydrogenase; Provisional
Probab=75.44 E-value=25 Score=27.92 Aligned_cols=55 Identities=15% Similarity=0.062 Sum_probs=37.1
Q ss_pred CeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCC-HHHHHHHHHcCCEEEEeCC
Q 028618 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLTDP 124 (206)
Q Consensus 70 ~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~-~~~~~~~~~~Ga~v~~~~~ 124 (206)
+..+|+..+|.-|.+++......|.+++++...... ....+.+...|.++..+..
T Consensus 9 k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 64 (252)
T PRK07035 9 KIALVTGASRGIGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAIVAAGGKAEALAC 64 (252)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEc
Confidence 367899999999999999999999987777543211 1223334455666655543
No 229
>PRK06500 short chain dehydrogenase; Provisional
Probab=75.29 E-value=32 Score=27.09 Aligned_cols=54 Identities=17% Similarity=0.145 Sum_probs=36.8
Q ss_pred CeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCC
Q 028618 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPA 125 (206)
Q Consensus 70 ~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~ 125 (206)
+..+|+..+|..|.+++......|.+++++.... ....+..+.+|.++..+..+
T Consensus 7 k~vlItGasg~iG~~la~~l~~~g~~v~~~~r~~--~~~~~~~~~~~~~~~~~~~D 60 (249)
T PRK06500 7 KTALITGGTSGIGLETARQFLAEGARVAITGRDP--ASLEAARAELGESALVIRAD 60 (249)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCH--HHHHHHHHHhCCceEEEEec
Confidence 4678999999999999999999999876664331 11122334567776655433
No 230
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=75.21 E-value=32 Score=28.19 Aligned_cols=92 Identities=11% Similarity=0.095 Sum_probs=45.5
Q ss_pred HHHHHHHHHC--CCcEEEEeCC-CCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEE---cCCCCCCcc
Q 028618 83 IGLAFMAAAK--QYRLIITMPA-SMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYM---LQQFENPAN 156 (206)
Q Consensus 83 ~alA~~a~~~--g~~~~ivvp~-~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~ 156 (206)
..+.++++.+ |.+. =-+|. +.-..-.+.....|..|.+++.+. ....+.++.+.+++ +.-. -++|.++.-
T Consensus 70 ~gvv~~~~~~~~~~~~-~Rv~G~dl~~~ll~~~~~~~~~v~llG~~~--~v~~~a~~~l~~~y-~l~i~g~~~Gyf~~~e 145 (243)
T PRK03692 70 ISVVRSIRKKYPQAQV-SRVAGADLWEALMARAGKEGTPVFLVGGKP--EVLAQTEAKLRTQW-NVNIVGSQDGYFTPEQ 145 (243)
T ss_pred HHHHHHHHHhcCCCCC-CeeChHHHHHHHHHHHHhcCCeEEEECCCH--HHHHHHHHHHHHHh-CCEEEEEeCCCCCHHH
Confidence 4666777655 3331 01111 111233444456788899998873 23333344444554 3322 234433211
Q ss_pred HHHHHHhHHHHHHhhhC-CCCCEEEEccCcc
Q 028618 157 PKIHYETTGPELWKGSG-GRIDALVSGIGTG 186 (206)
Q Consensus 157 ~~~g~~t~~~Ei~~q~~-~~~d~vv~~vG~G 186 (206)
. .+|.+++. ..+|.|+++.|+-
T Consensus 146 ----~----~~i~~~I~~s~~dil~VglG~P 168 (243)
T PRK03692 146 ----R----QALFERIHASGAKIVTVAMGSP 168 (243)
T ss_pred ----H----HHHHHHHHhcCCCEEEEECCCc
Confidence 1 23444442 2589999988853
No 231
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=75.10 E-value=29 Score=27.66 Aligned_cols=56 Identities=20% Similarity=0.063 Sum_probs=37.2
Q ss_pred CeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCC-HHHHHHHHHcCCEEEEeCCC
Q 028618 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLTDPA 125 (206)
Q Consensus 70 ~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~-~~~~~~~~~~Ga~v~~~~~~ 125 (206)
+..+|+..+|..|.++|......|.+++++...... ......++..+.++..+..|
T Consensus 10 k~~lItGas~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~~~~~~~~~~~~D 66 (254)
T PRK08085 10 KNILITGSAQGIGFLLATGLAEYGAEIIINDITAERAELAVAKLRQEGIKAHAAPFN 66 (254)
T ss_pred CEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcCCeEEEEecC
Confidence 368899999999999999999999887765433211 11223445556666655444
No 232
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=75.09 E-value=27 Score=27.71 Aligned_cols=56 Identities=13% Similarity=0.165 Sum_probs=39.4
Q ss_pred CeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCH-HHHHHHHHcCCEEEEeCCC
Q 028618 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSL-ERRIILRAFGAELVLTDPA 125 (206)
Q Consensus 70 ~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~-~~~~~~~~~Ga~v~~~~~~ 125 (206)
+..+|+..+|..|.++|..-...|.+++++....... .....++..+.++..+..|
T Consensus 5 ~~vlItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D 61 (258)
T PRK12429 5 KVALVTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKAGGKAIGVAMD 61 (258)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcC
Confidence 3678889999999999999988999888876553322 2233455567776655544
No 233
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=74.87 E-value=23 Score=31.82 Aligned_cols=54 Identities=7% Similarity=-0.128 Sum_probs=40.6
Q ss_pred hhHHHHHHHHHHHHcCCCCCCCeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCC
Q 028618 49 KDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPA 102 (206)
Q Consensus 49 K~R~a~~~~~~a~~~g~~~~~~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~ 102 (206)
--+|..+.+..+.+.-.......+++...+||-|..+|.....+|.+++.+...
T Consensus 216 TG~Gv~~~~~~~l~~~~~~l~Gk~VaVqG~GnVg~~aa~~L~e~GakVVavSD~ 269 (454)
T PTZ00079 216 TGYGLVYFVLEVLKKLNDSLEGKTVVVSGSGNVAQYAVEKLLQLGAKVLTMSDS 269 (454)
T ss_pred cHHHHHHHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcC
Confidence 456888888776543333333468888999999999999999999998866543
No 234
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=74.85 E-value=28 Score=29.17 Aligned_cols=53 Identities=25% Similarity=0.261 Sum_probs=38.3
Q ss_pred CCCCCeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 028618 66 ITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 121 (206)
Q Consensus 66 ~~~~~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~ 121 (206)
..+++..+|.+ +|-.|.+++..|+.+|.+.++++ ..++.+.+.++.+|++.++
T Consensus 159 ~~~g~~vlI~~-~g~vg~~a~~la~~~G~~~v~~~--~~~~~~~~~~~~~g~~~~v 211 (340)
T TIGR00692 159 PISGKSVLVTG-AGPIGLMAIAVAKASGAYPVIVS--DPNEYRLELAKKMGATYVV 211 (340)
T ss_pred CCCCCEEEEEC-CCHHHHHHHHHHHHcCCcEEEEE--CCCHHHHHHHHHhCCcEEE
Confidence 45565667754 58899999999999999845555 3466777888888885443
No 235
>PRK08265 short chain dehydrogenase; Provisional
Probab=74.74 E-value=33 Score=27.60 Aligned_cols=54 Identities=11% Similarity=0.080 Sum_probs=36.1
Q ss_pred CeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCC
Q 028618 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPA 125 (206)
Q Consensus 70 ~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~ 125 (206)
+..+|+..+|--|.++|......|.+++++-... ....+..+..+.++..+..|
T Consensus 7 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~--~~~~~~~~~~~~~~~~~~~D 60 (261)
T PRK08265 7 KVAIVTGGATLIGAAVARALVAAGARVAIVDIDA--DNGAAVAASLGERARFIATD 60 (261)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH--HHHHHHHHHhCCeeEEEEec
Confidence 3678888889999999999999999877764432 11222334456666555443
No 236
>PRK07832 short chain dehydrogenase; Provisional
Probab=74.68 E-value=44 Score=27.04 Aligned_cols=31 Identities=19% Similarity=0.216 Sum_probs=24.9
Q ss_pred eEEEeeCCCchHHHHHHHHHHCCCcEEEEeC
Q 028618 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMP 101 (206)
Q Consensus 71 ~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp 101 (206)
+.+|+..+|..|.++|......|.+++++..
T Consensus 2 ~vlItGas~giG~~la~~la~~G~~vv~~~r 32 (272)
T PRK07832 2 RCFVTGAASGIGRATALRLAAQGAELFLTDR 32 (272)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEeC
Confidence 4678888899999999998888987666543
No 237
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=74.65 E-value=25 Score=28.21 Aligned_cols=32 Identities=13% Similarity=0.135 Sum_probs=25.6
Q ss_pred CeEEEeeCC--CchHHHHHHHHHHCCCcEEEEeC
Q 028618 70 ESVLIEPTS--GNTGIGLAFMAAAKQYRLIITMP 101 (206)
Q Consensus 70 ~~~vv~aSs--GN~g~alA~~a~~~g~~~~ivvp 101 (206)
+..+|+..+ +.-|.++|....+.|.++++...
T Consensus 8 k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r 41 (252)
T PRK06079 8 KKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQ 41 (252)
T ss_pred CEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecC
Confidence 356777766 68999999999999998777644
No 238
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=74.60 E-value=51 Score=27.75 Aligned_cols=58 Identities=19% Similarity=0.205 Sum_probs=41.3
Q ss_pred HcCCCCCCCeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEEEe
Q 028618 62 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLT 122 (206)
Q Consensus 62 ~~g~~~~~~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~ 122 (206)
+...+.++++.+|. .+|..|.+++..|+.+|.+.++.+.. ++.+.+..+.+|++.++-
T Consensus 160 ~~~~~~~g~~vlI~-g~g~iG~~~~~lak~~G~~~v~~~~~--~~~~~~~~~~~g~~~~v~ 217 (351)
T cd08285 160 ELANIKLGDTVAVF-GIGPVGLMAVAGARLRGAGRIIAVGS--RPNRVELAKEYGATDIVD 217 (351)
T ss_pred HccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEeC--CHHHHHHHHHcCCceEec
Confidence 44556677666666 57899999999999999975444433 346677888999865543
No 239
>PRK06841 short chain dehydrogenase; Provisional
Probab=74.54 E-value=34 Score=27.19 Aligned_cols=33 Identities=18% Similarity=0.200 Sum_probs=27.4
Q ss_pred CeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCC
Q 028618 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPA 102 (206)
Q Consensus 70 ~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~ 102 (206)
+..+|+..+|--|.++|......|.+++++...
T Consensus 16 k~vlItGas~~IG~~la~~l~~~G~~Vi~~~r~ 48 (255)
T PRK06841 16 KVAVVTGGASGIGHAIAELFAAKGARVALLDRS 48 (255)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence 367888889999999999999999987766554
No 240
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=74.47 E-value=26 Score=27.99 Aligned_cols=56 Identities=16% Similarity=0.217 Sum_probs=37.7
Q ss_pred CeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCC-HHHHHHHHHcCCEEEEeCCC
Q 028618 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLTDPA 125 (206)
Q Consensus 70 ~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~-~~~~~~~~~~Ga~v~~~~~~ 125 (206)
+..+|+..+|--|.++|......|.+++++...... +...+.++..+.++..+..|
T Consensus 13 k~ilItGa~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~~~~~~~~~D 69 (259)
T PRK08213 13 KTALVTGGSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALGIDALWIAAD 69 (259)
T ss_pred CEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 368888889999999999998899987666543211 11223345567777666554
No 241
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=74.24 E-value=28 Score=27.53 Aligned_cols=56 Identities=11% Similarity=0.012 Sum_probs=38.1
Q ss_pred CeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCC-HHHHHHHHHcCCEEEEeCCC
Q 028618 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLTDPA 125 (206)
Q Consensus 70 ~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~-~~~~~~~~~~Ga~v~~~~~~ 125 (206)
+..+|+..+|.-|.++|......|.+++++...... ......++..+.++..+..+
T Consensus 4 ~~ilItGas~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~d 60 (250)
T TIGR03206 4 KTAIVTGGGGGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRAKGGNAQAFACD 60 (250)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcCCcEEEEEcC
Confidence 467899999999999999999999987776543221 11123345556666666554
No 242
>PTZ00354 alcohol dehydrogenase; Provisional
Probab=74.06 E-value=49 Score=27.27 Aligned_cols=56 Identities=27% Similarity=0.305 Sum_probs=41.5
Q ss_pred CCCCCCCeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEEEe
Q 028618 64 GLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLT 122 (206)
Q Consensus 64 g~~~~~~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~ 122 (206)
+.+.+++..+|...+|..|++++..|+.+|.+.+++. .++.+.+.++.+|++.+..
T Consensus 136 ~~~~~~~~vlI~ga~g~~g~~~~~~a~~~g~~v~~~~---~~~~~~~~~~~~g~~~~~~ 191 (334)
T PTZ00354 136 GDVKKGQSVLIHAGASGVGTAAAQLAEKYGAATIITT---SSEEKVDFCKKLAAIILIR 191 (334)
T ss_pred cCCCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEe---CCHHHHHHHHHcCCcEEEe
Confidence 5566776777777789999999999999999876543 3445666667788864443
No 243
>PRK07791 short chain dehydrogenase; Provisional
Probab=74.02 E-value=32 Score=28.29 Aligned_cols=72 Identities=18% Similarity=0.177 Sum_probs=43.6
Q ss_pred CeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCC---------C-CHHHHHHHHHcCCEEEEeCCCCC-hHHHHHHHHHH
Q 028618 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPAS---------M-SLERRIILRAFGAELVLTDPAKG-MKGAVQKAEEI 138 (206)
Q Consensus 70 ~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~---------~-~~~~~~~~~~~Ga~v~~~~~~~~-~~~~~~~a~~~ 138 (206)
+..+|+..++--|.++|......|.+++++.... . .....+.++..|.++..+..|-. .++..+...+.
T Consensus 7 k~~lITGas~GIG~aia~~la~~G~~vii~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dv~~~~~v~~~~~~~ 86 (286)
T PRK07791 7 RVVIVTGAGGGIGRAHALAFAAEGARVVVNDIGVGLDGSASGGSAAQAVVDEIVAAGGEAVANGDDIADWDGAANLVDAA 86 (286)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEeeCCccccccccchhHHHHHHHHHHhcCCceEEEeCCCCCHHHHHHHHHHH
Confidence 4678888889999999999999999877764321 1 11223445556777766544321 23333334444
Q ss_pred HHh
Q 028618 139 LAK 141 (206)
Q Consensus 139 ~~~ 141 (206)
.++
T Consensus 87 ~~~ 89 (286)
T PRK07791 87 VET 89 (286)
T ss_pred HHh
Confidence 444
No 244
>PRK05693 short chain dehydrogenase; Provisional
Probab=73.88 E-value=46 Score=26.91 Aligned_cols=52 Identities=31% Similarity=0.187 Sum_probs=38.4
Q ss_pred eEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCC
Q 028618 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPA 125 (206)
Q Consensus 71 ~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~ 125 (206)
..+|+..+|-.|.++|......|.+++++... ..+.+.+...+.+.+.++-.
T Consensus 3 ~vlItGasggiG~~la~~l~~~G~~V~~~~r~---~~~~~~~~~~~~~~~~~Dl~ 54 (274)
T PRK05693 3 VVLITGCSSGIGRALADAFKAAGYEVWATARK---AEDVEALAAAGFTAVQLDVN 54 (274)
T ss_pred EEEEecCCChHHHHHHHHHHHCCCEEEEEeCC---HHHHHHHHHCCCeEEEeeCC
Confidence 56888889999999999999999988776543 23445555667777666654
No 245
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=73.86 E-value=24 Score=29.30 Aligned_cols=55 Identities=15% Similarity=0.157 Sum_probs=39.4
Q ss_pred HcCCCCCCCeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEE
Q 028618 62 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 120 (206)
Q Consensus 62 ~~g~~~~~~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~ 120 (206)
+...+.+++..+|. ..|..|.+++..|+..|++++++.+.. .+++.++.+|++-+
T Consensus 161 ~~~~~~~~~~vlV~-g~g~vg~~~~~la~~~g~~v~~~~~~~---~~~~~~~~~g~~~~ 215 (329)
T cd08298 161 KLAGLKPGQRLGLY-GFGASAHLALQIARYQGAEVFAFTRSG---EHQELARELGADWA 215 (329)
T ss_pred HhhCCCCCCEEEEE-CCcHHHHHHHHHHHHCCCeEEEEcCCh---HHHHHHHHhCCcEE
Confidence 45556677666665 578899999999999999876665443 56666677887543
No 246
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=73.86 E-value=12 Score=28.32 Aligned_cols=33 Identities=15% Similarity=0.112 Sum_probs=29.1
Q ss_pred EEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCC
Q 028618 73 LIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS 105 (206)
Q Consensus 73 vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~ 105 (206)
+|...+|+.|..++-.....|.+++++++...+
T Consensus 2 ~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~ 34 (183)
T PF13460_consen 2 LVFGATGFVGRALAKQLLRRGHEVTALVRSPSK 34 (183)
T ss_dssp EEETTTSHHHHHHHHHHHHTTSEEEEEESSGGG
T ss_pred EEECCCChHHHHHHHHHHHCCCEEEEEecCchh
Confidence 677889999999999999999999999987543
No 247
>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=73.61 E-value=41 Score=28.23 Aligned_cols=56 Identities=29% Similarity=0.392 Sum_probs=43.1
Q ss_pred CeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHH-HHHHHcCC-E-EEEeCCC
Q 028618 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERR-IILRAFGA-E-LVLTDPA 125 (206)
Q Consensus 70 ~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~-~~~~~~Ga-~-v~~~~~~ 125 (206)
+..+||..|+--|.++|+.-...|.+.++++...-...++ +.++..++ + ++....|
T Consensus 13 kvVvITGASsGIG~~lA~~la~~G~~l~lvar~~rrl~~v~~~l~~~~~~~~v~~~~~D 71 (282)
T KOG1205|consen 13 KVVLITGASSGIGEALAYELAKRGAKLVLVARRARRLERVAEELRKLGSLEKVLVLQLD 71 (282)
T ss_pred CEEEEeCCCcHHHHHHHHHHHhCCCceEEeehhhhhHHHHHHHHHHhCCcCccEEEeCc
Confidence 3678888888899999999999999999999887666666 66665553 4 5555443
No 248
>cd05282 ETR_like 2-enoyl thioester reductase-like. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman
Probab=73.57 E-value=36 Score=27.98 Aligned_cols=55 Identities=24% Similarity=0.282 Sum_probs=38.7
Q ss_pred cCCCCCCCeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEE
Q 028618 63 KGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 120 (206)
Q Consensus 63 ~g~~~~~~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~ 120 (206)
.+.+.++...+|...+|..|.+++..|+.+|.++++..+.. .+.+.++.+|++-+
T Consensus 133 ~~~~~~~~~vlI~g~~~~vg~~~~~~a~~~g~~v~~~~~~~---~~~~~~~~~g~~~~ 187 (323)
T cd05282 133 YLKLPPGDWVIQNAANSAVGRMLIQLAKLLGFKTINVVRRD---EQVEELKALGADEV 187 (323)
T ss_pred hccCCCCCEEEEcccccHHHHHHHHHHHHCCCeEEEEecCh---HHHHHHHhcCCCEE
Confidence 34456666666777778999999999999999976665432 44555566776433
No 249
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=73.45 E-value=20 Score=29.65 Aligned_cols=53 Identities=9% Similarity=-0.142 Sum_probs=40.9
Q ss_pred hhHHHHHHHHHHHHcCCCCCCCeEEEeeCCCchHHHHHHHHHHCCCcEEEEeC
Q 028618 49 KDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMP 101 (206)
Q Consensus 49 K~R~a~~~~~~a~~~g~~~~~~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp 101 (206)
=-||..+.+..+.+.-.......+++....||-|..+|.....+|.+++.+..
T Consensus 17 Tg~Gv~~~~~~~~~~~~~~l~g~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD 69 (254)
T cd05313 17 TGYGLVYFVEEMLKDRNETLKGKRVAISGSGNVAQYAAEKLLELGAKVVTLSD 69 (254)
T ss_pred hHHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEC
Confidence 35678888877654433343346889999999999999999999999987754
No 250
>PRK02610 histidinol-phosphate aminotransferase; Provisional
Probab=73.44 E-value=26 Score=30.07 Aligned_cols=54 Identities=11% Similarity=0.007 Sum_probs=34.3
Q ss_pred EEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCC
Q 028618 72 VLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPA 125 (206)
Q Consensus 72 ~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~ 125 (206)
.|+..+++..+..++..+....-+-.|++|.-+-..-...++.+|++++.++.+
T Consensus 93 ~I~it~Ga~~al~~~~~~~~~~g~~~Vlv~~P~y~~~~~~~~~~g~~~~~~~~~ 146 (374)
T PRK02610 93 NISVGNGSDELIRSLLIATCLGGEGSILVAEPTFSMYGILAQTLGIPVVRVGRD 146 (374)
T ss_pred HEEEcCChHHHHHHHHHHHcCCCCCeEEEcCCChHHHHHHHHHcCCEEEEecCC
Confidence 466667777777655555433222245555544455567778999999999753
No 251
>PRK07814 short chain dehydrogenase; Provisional
Probab=73.42 E-value=30 Score=27.89 Aligned_cols=55 Identities=15% Similarity=0.149 Sum_probs=36.4
Q ss_pred CeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCC-HHHHHHHHHcCCEEEEeCC
Q 028618 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLTDP 124 (206)
Q Consensus 70 ~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~-~~~~~~~~~~Ga~v~~~~~ 124 (206)
+..+|++.+|--|.++|......|.+++++...... ....+.++..|.++..+..
T Consensus 11 ~~vlItGasggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~ 66 (263)
T PRK07814 11 QVAVVTGAGRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAAGRRAHVVAA 66 (263)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEc
Confidence 467899999999999999998899988777553211 1222334445666655443
No 252
>PRK07904 short chain dehydrogenase; Provisional
Probab=73.41 E-value=34 Score=27.55 Aligned_cols=54 Identities=13% Similarity=0.196 Sum_probs=35.0
Q ss_pred CeEEEeeCCCchHHHHHHHHHHC-CCcEEEEeCCCCC--HHHHHHHHHcCC-EEEEeC
Q 028618 70 ESVLIEPTSGNTGIGLAFMAAAK-QYRLIITMPASMS--LERRIILRAFGA-ELVLTD 123 (206)
Q Consensus 70 ~~~vv~aSsGN~g~alA~~a~~~-g~~~~ivvp~~~~--~~~~~~~~~~Ga-~v~~~~ 123 (206)
+..+|+..+|-.|.++|...... |.+++++.....+ ....+.++..|. ++..+.
T Consensus 9 ~~vlItGas~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~ 66 (253)
T PRK07904 9 QTILLLGGTSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGASSVEVID 66 (253)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCCCceEEEE
Confidence 36788888888999999887776 4888877654332 222344555553 554443
No 253
>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=73.29 E-value=26 Score=27.73 Aligned_cols=56 Identities=13% Similarity=0.120 Sum_probs=38.5
Q ss_pred CeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCC--HHHHHHHHHcCCEEEEeCCC
Q 028618 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS--LERRIILRAFGAELVLTDPA 125 (206)
Q Consensus 70 ~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~--~~~~~~~~~~Ga~v~~~~~~ 125 (206)
++.+|+..+|--|.+++......|.++++....... ......++..|.++..+..+
T Consensus 7 ~~vlitGasg~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 64 (252)
T PRK06077 7 KVVVVTGSGRGIGRAIAVRLAKEGSLVVVNAKKRAEEMNETLKMVKENGGEGIGVLAD 64 (252)
T ss_pred cEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHHcCCeeEEEEec
Confidence 367888889999999999988999987765533221 22334566677776665444
No 254
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=73.28 E-value=28 Score=27.52 Aligned_cols=55 Identities=13% Similarity=0.216 Sum_probs=37.6
Q ss_pred eEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHH-HHHHHHcCCEEEEeCCC
Q 028618 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLER-RIILRAFGAELVLTDPA 125 (206)
Q Consensus 71 ~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~-~~~~~~~Ga~v~~~~~~ 125 (206)
..+|+..+|-.|.+++......|.+++++........+ ...++..+.++..+..+
T Consensus 3 ~vlItGa~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D 58 (255)
T TIGR01963 3 TALVTGAASGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVATDAGGSVIYLVAD 58 (255)
T ss_pred EEEEcCCcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEECC
Confidence 57888999999999999988899987777654322212 22334456677665544
No 255
>PRK07677 short chain dehydrogenase; Provisional
Probab=73.26 E-value=32 Score=27.39 Aligned_cols=56 Identities=18% Similarity=0.201 Sum_probs=36.6
Q ss_pred CeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCC-HHHHHHHHHcCCEEEEeCCC
Q 028618 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLTDPA 125 (206)
Q Consensus 70 ~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~-~~~~~~~~~~Ga~v~~~~~~ 125 (206)
+..+|+..+|.-|.++|......|.+++++...... ....+.++..+.++..+..|
T Consensus 2 k~~lItG~s~giG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D 58 (252)
T PRK07677 2 KVVIITGGSSGMGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQFPGQVLTVQMD 58 (252)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEec
Confidence 367888899999999999999999977666443221 12223344456666655443
No 256
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=73.18 E-value=48 Score=26.78 Aligned_cols=57 Identities=32% Similarity=0.408 Sum_probs=40.6
Q ss_pred cCCCCCCCeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEEEe
Q 028618 63 KGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLT 122 (206)
Q Consensus 63 ~g~~~~~~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~ 122 (206)
.+.+.+++..+|...+|..|.+++..++.+|.+++++. .++.+.+.++.+|++-++.
T Consensus 131 ~~~~~~g~~vlI~g~~g~~g~~~~~~a~~~g~~v~~~~---~~~~~~~~~~~~g~~~~~~ 187 (320)
T cd05286 131 TYPVKPGDTVLVHAAAGGVGLLLTQWAKALGATVIGTV---SSEEKAELARAAGADHVIN 187 (320)
T ss_pred hcCCCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEc---CCHHHHHHHHHCCCCEEEe
Confidence 45566666777777789999999999999999865553 2445566667788754443
No 257
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=73.10 E-value=25 Score=27.49 Aligned_cols=62 Identities=18% Similarity=0.246 Sum_probs=38.2
Q ss_pred EEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhC
Q 028618 72 VLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKT 142 (206)
Q Consensus 72 ~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~ 142 (206)
-|--.|||-+|.++|-.+...|-.++++.-....+. -.+.+++.+.. .++..+.+.+...+.
T Consensus 22 ~ItN~SSG~~G~~lA~~~~~~Ga~V~li~g~~~~~~------p~~~~~i~v~s---a~em~~~~~~~~~~~ 83 (185)
T PF04127_consen 22 FITNRSSGKMGAALAEEAARRGAEVTLIHGPSSLPP------PPGVKVIRVES---AEEMLEAVKELLPSA 83 (185)
T ss_dssp EEEES--SHHHHHHHHHHHHTT-EEEEEE-TTS----------TTEEEEE-SS---HHHHHHHHHHHGGGG
T ss_pred EecCCCcCHHHHHHHHHHHHCCCEEEEEecCccccc------cccceEEEecc---hhhhhhhhccccCcc
Confidence 344459999999999999999999999985532111 24667777665 345666666665554
No 258
>PRK06138 short chain dehydrogenase; Provisional
Probab=73.01 E-value=34 Score=26.99 Aligned_cols=55 Identities=9% Similarity=0.089 Sum_probs=36.2
Q ss_pred CeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCC-HHHHHHHHHcCCEEEEeCCC
Q 028618 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLTDPA 125 (206)
Q Consensus 70 ~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~-~~~~~~~~~~Ga~v~~~~~~ 125 (206)
+..+|+..+|-.|.++|......|.+++++...... ....+.++ .+.++..+..|
T Consensus 6 k~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~-~~~~~~~~~~D 61 (252)
T PRK06138 6 RVAIVTGAGSGIGRATAKLFAREGARVVVADRDAEAAERVAAAIA-AGGRAFARQGD 61 (252)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCCeEEEecCCHHHHHHHHHHHh-cCCeEEEEEcC
Confidence 367899999999999999888889887766543221 11222233 46666665544
No 259
>PRK05717 oxidoreductase; Validated
Probab=72.85 E-value=39 Score=26.99 Aligned_cols=54 Identities=13% Similarity=0.233 Sum_probs=36.4
Q ss_pred CeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCC
Q 028618 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPA 125 (206)
Q Consensus 70 ~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~ 125 (206)
+..+|+..+|.-|.++|......|.+++++-... ....+..+..+.+++.+..|
T Consensus 11 k~vlItG~sg~IG~~~a~~l~~~g~~v~~~~~~~--~~~~~~~~~~~~~~~~~~~D 64 (255)
T PRK05717 11 RVALVTGAARGIGLGIAAWLIAEGWQVVLADLDR--ERGSKVAKALGENAWFIAMD 64 (255)
T ss_pred CEEEEeCCcchHHHHHHHHHHHcCCEEEEEcCCH--HHHHHHHHHcCCceEEEEcc
Confidence 4688999999999999999999998877763321 11222334556666555544
No 260
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=72.85 E-value=57 Score=27.56 Aligned_cols=54 Identities=28% Similarity=0.410 Sum_probs=37.7
Q ss_pred CCCCCCCeEEEeeCCCchHHHHHHHHHHCCC-cEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 028618 64 GLITPGESVLIEPTSGNTGIGLAFMAAAKQY-RLIITMPASMSLERRIILRAFGAELVL 121 (206)
Q Consensus 64 g~~~~~~~~vv~aSsGN~g~alA~~a~~~g~-~~~ivvp~~~~~~~~~~~~~~Ga~v~~ 121 (206)
+...+++..+|.+ +|..|.+++..|+.+|+ +++++. .++.+...++.+|++-+.
T Consensus 173 ~~~~~g~~vlI~g-~g~vG~~~~~lak~~G~~~v~~~~---~~~~~~~~~~~~g~~~vi 227 (361)
T cd08231 173 GPVGAGDTVVVQG-AGPLGLYAVAAAKLAGARRVIVID---GSPERLELAREFGADATI 227 (361)
T ss_pred cCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCeEEEEc---CCHHHHHHHHHcCCCeEE
Confidence 3344665666664 69999999999999999 554442 245667777888885443
No 261
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=72.62 E-value=47 Score=26.47 Aligned_cols=54 Identities=15% Similarity=0.098 Sum_probs=38.2
Q ss_pred CeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCC
Q 028618 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPA 125 (206)
Q Consensus 70 ~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~ 125 (206)
+..+|+..+|--|.++|......|.++++..... +...+.++..+...+.++-.
T Consensus 8 k~~lItGas~gIG~~~a~~l~~~G~~v~~~~~~~--~~~~~~l~~~~~~~~~~Dl~ 61 (255)
T PRK06463 8 KVALITGGTRGIGRAIAEAFLREGAKVAVLYNSA--ENEAKELREKGVFTIKCDVG 61 (255)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCc--HHHHHHHHhCCCeEEEecCC
Confidence 3678888999999999999999999877664433 33344555556666666654
No 262
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=72.59 E-value=40 Score=28.30 Aligned_cols=47 Identities=17% Similarity=0.103 Sum_probs=34.6
Q ss_pred eEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEE
Q 028618 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 120 (206)
Q Consensus 71 ~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~ 120 (206)
..+..-..|..|++++..++.+|.+++++-+. +.+....+.+|++.+
T Consensus 153 ~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~---~~~~~~~~~~G~~~~ 199 (296)
T PRK08306 153 SNVLVLGFGRTGMTLARTLKALGANVTVGARK---SAHLARITEMGLSPF 199 (296)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEECC---HHHHHHHHHcCCeee
Confidence 45666667999999999999999877776443 344566677887654
No 263
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=72.56 E-value=21 Score=28.66 Aligned_cols=53 Identities=15% Similarity=-0.027 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHHcCCCCCCCeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCC
Q 028618 51 RIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPAS 103 (206)
Q Consensus 51 R~a~~~~~~a~~~g~~~~~~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~ 103 (206)
+|..+.+..+.++-.......+++....||-|..+|......|.+++.+...+
T Consensus 4 ~Gv~~~~~~~~~~~~~~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~ 56 (217)
T cd05211 4 YGVVVAMKAAMKHLGDSLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPD 56 (217)
T ss_pred hHHHHHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCC
Confidence 56677777664332233334688889999999999999999999888887654
No 264
>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=72.29 E-value=31 Score=28.14 Aligned_cols=52 Identities=27% Similarity=0.378 Sum_probs=38.4
Q ss_pred CCCCCCCeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEE
Q 028618 64 GLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAEL 119 (206)
Q Consensus 64 g~~~~~~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v 119 (206)
+.+.++...+|.+.+|..|.+++..|+..|++++++.+. .+.+.++.+|++-
T Consensus 139 ~~~~~g~~vli~g~~g~~g~~~~~la~~~g~~v~~~~~~----~~~~~~~~~g~~~ 190 (319)
T cd08267 139 GKVKPGQRVLINGASGGVGTFAVQIAKALGAHVTGVCST----RNAELVRSLGADE 190 (319)
T ss_pred cCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEeCH----HHHHHHHHcCCCE
Confidence 345566677777777999999999999999987666542 4566667788643
No 265
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=72.23 E-value=26 Score=27.76 Aligned_cols=55 Identities=25% Similarity=0.256 Sum_probs=38.0
Q ss_pred eEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCC--HHHHHHHHHcCCEEEEeCCC
Q 028618 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS--LERRIILRAFGAELVLTDPA 125 (206)
Q Consensus 71 ~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~--~~~~~~~~~~Ga~v~~~~~~ 125 (206)
..+|+..+|.-|.++|....+.|.++++....... ......++..+.++..+..+
T Consensus 4 ~ilItGas~giG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 60 (248)
T PRK06947 4 VVLITGASRGIGRATAVLAAARGWSVGINYARDAAAAEETADAVRAAGGRACVVAGD 60 (248)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhcCCcEEEEEec
Confidence 57888899999999999999999887665433211 12234456677777766544
No 266
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=72.14 E-value=35 Score=27.02 Aligned_cols=55 Identities=15% Similarity=0.120 Sum_probs=37.8
Q ss_pred eEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCC-HHHHHHHHHcCCEEEEeCCC
Q 028618 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLTDPA 125 (206)
Q Consensus 71 ~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~-~~~~~~~~~~Ga~v~~~~~~ 125 (206)
+.+|+..+|.-|.++|......|.+++++...... +...+.++..|.++..+..|
T Consensus 2 ~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D 57 (254)
T TIGR02415 2 VALVTGGAQGIGKGIAERLAKDGFAVAVADLNEETAKETAKEINQAGGKAVAYKLD 57 (254)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcC
Confidence 46888899999999999999999987666543211 12234456667777665544
No 267
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=72.14 E-value=55 Score=27.02 Aligned_cols=56 Identities=23% Similarity=0.289 Sum_probs=38.6
Q ss_pred cCCCCCCCeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHH-cCCEEEE
Q 028618 63 KGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRA-FGAELVL 121 (206)
Q Consensus 63 ~g~~~~~~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~-~Ga~v~~ 121 (206)
.+.+.+++..+|...+|-.|.+++..|+.+|.+++++.+ ...+.+.++. +|++-+.
T Consensus 140 ~~~~~~~~~vlI~g~~g~ig~~~~~~a~~~G~~vi~~~~---~~~~~~~~~~~~g~~~~~ 196 (329)
T cd05288 140 IGKPKPGETVVVSAAAGAVGSVVGQIAKLLGARVVGIAG---SDEKCRWLVEELGFDAAI 196 (329)
T ss_pred ccCCCCCCEEEEecCcchHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHhhcCCceEE
Confidence 344566666677777899999999999999998666543 3345555555 7764333
No 268
>PRK06101 short chain dehydrogenase; Provisional
Probab=72.06 E-value=35 Score=27.02 Aligned_cols=51 Identities=22% Similarity=0.114 Sum_probs=34.9
Q ss_pred eEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCC--EEEEeCC
Q 028618 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGA--ELVLTDP 124 (206)
Q Consensus 71 ~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga--~v~~~~~ 124 (206)
..+|++.+|.-|.++|..-...|.+++++... +.+.+.+...+. ..+.++-
T Consensus 3 ~vlItGas~giG~~la~~L~~~G~~V~~~~r~---~~~~~~~~~~~~~~~~~~~D~ 55 (240)
T PRK06101 3 AVLITGATSGIGKQLALDYAKQGWQVIACGRN---QSVLDELHTQSANIFTLAFDV 55 (240)
T ss_pred EEEEEcCCcHHHHHHHHHHHhCCCEEEEEECC---HHHHHHHHHhcCCCeEEEeeC
Confidence 56889999999999999998899997776543 344444444443 3444443
No 269
>cd08244 MDR_enoyl_red Possible enoyl reductase. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr
Probab=72.04 E-value=54 Score=26.91 Aligned_cols=57 Identities=25% Similarity=0.378 Sum_probs=40.1
Q ss_pred HHcCCCCCCCeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEE
Q 028618 61 EAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 120 (206)
Q Consensus 61 ~~~g~~~~~~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~ 120 (206)
.+...++++...+|...+|..|.+++..|+.+|.+++++.+. ..+.+.++.+|++-+
T Consensus 135 ~~~~~~~~~~~vlI~g~~~~~g~~~~~la~~~g~~v~~~~~~---~~~~~~~~~~g~~~~ 191 (324)
T cd08244 135 LDLATLTPGDVVLVTAAAGGLGSLLVQLAKAAGATVVGAAGG---PAKTALVRALGADVA 191 (324)
T ss_pred HHhcCCCCCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEeCC---HHHHHHHHHcCCCEE
Confidence 344556677677777778999999999999999986555332 344555566777443
No 270
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=72.01 E-value=8.2 Score=35.42 Aligned_cols=55 Identities=15% Similarity=0.128 Sum_probs=41.1
Q ss_pred CCCCeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCC------------------CCHHHHHHHHHcCCEEEEe
Q 028618 67 TPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPAS------------------MSLERRIILRAFGAELVLT 122 (206)
Q Consensus 67 ~~~~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~------------------~~~~~~~~~~~~Ga~v~~~ 122 (206)
.+| +.|+.-.+|..|++.|..+++.|.+++++=... ....+++.++.+|++++.-
T Consensus 135 ~~g-~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~~gip~~~~~~~~~~~~l~~~~~~Gv~~~~~ 207 (564)
T PRK12771 135 DTG-KRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMRYGIPAYRLPREVLDAEIQRILDLGVEVRLG 207 (564)
T ss_pred CCC-CEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeeeecCCCccCCHHHHHHHHHHHHHCCCEEEeC
Confidence 344 468888999999999999999999977763221 1245667788999987653
No 271
>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members. Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=72.01 E-value=55 Score=27.03 Aligned_cols=56 Identities=27% Similarity=0.363 Sum_probs=40.3
Q ss_pred cCCCCCCCeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 028618 63 KGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 121 (206)
Q Consensus 63 ~g~~~~~~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~ 121 (206)
.+.+.+++..+|...+|-.|.+++..|+.+|.+++++.. ++.+.+.++.+|++-++
T Consensus 134 ~~~~~~~~~vlI~ga~g~ig~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~~~v~ 189 (329)
T cd08250 134 VGEMKSGETVLVTAAAGGTGQFAVQLAKLAGCHVIGTCS---SDEKAEFLKSLGCDRPI 189 (329)
T ss_pred hcCCCCCCEEEEEeCccHHHHHHHHHHHHcCCeEEEEeC---cHHHHHHHHHcCCceEE
Confidence 345677777888888899999999999999998666543 33455555667764443
No 272
>PRK07326 short chain dehydrogenase; Provisional
Probab=72.01 E-value=45 Score=26.05 Aligned_cols=32 Identities=28% Similarity=0.332 Sum_probs=27.3
Q ss_pred CeEEEeeCCCchHHHHHHHHHHCCCcEEEEeC
Q 028618 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMP 101 (206)
Q Consensus 70 ~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp 101 (206)
+..+|+..+|..|.+++......|.+++++..
T Consensus 7 ~~ilItGatg~iG~~la~~l~~~g~~V~~~~r 38 (237)
T PRK07326 7 KVALITGGSKGIGFAIAEALLAEGYKVAITAR 38 (237)
T ss_pred CEEEEECCCCcHHHHHHHHHHHCCCEEEEeeC
Confidence 36788889999999999999889999777754
No 273
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=71.92 E-value=29 Score=28.80 Aligned_cols=56 Identities=23% Similarity=0.283 Sum_probs=38.9
Q ss_pred cCCCCCCCeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEEEe
Q 028618 63 KGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLT 122 (206)
Q Consensus 63 ~g~~~~~~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~ 122 (206)
+..+.+++..+|. ..|..|.+++..|+.+|++++++.+. ..+++.++.+|++.++.
T Consensus 157 ~~~~~~~~~vlI~-g~g~iG~~~~~~a~~~G~~v~~~~~~---~~~~~~~~~~g~~~~~~ 212 (330)
T cd08245 157 DAGPRPGERVAVL-GIGGLGHLAVQYARAMGFETVAITRS---PDKRELARKLGADEVVD 212 (330)
T ss_pred hhCCCCCCEEEEE-CCCHHHHHHHHHHHHCCCEEEEEeCC---HHHHHHHHHhCCcEEec
Confidence 3446666666666 45669999999999999987666443 45566667788765543
No 274
>TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family. Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized.
Probab=71.91 E-value=52 Score=26.71 Aligned_cols=58 Identities=26% Similarity=0.315 Sum_probs=40.8
Q ss_pred HHcCCCCCCCeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 028618 61 EAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 121 (206)
Q Consensus 61 ~~~g~~~~~~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~ 121 (206)
.+.+.+.+++..+|...+|..|.+++..++..|.++++..+. +.+.+.++.+|++.+.
T Consensus 132 ~~~~~~~~~~~vlv~g~~~~~g~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~~~~~ 189 (325)
T TIGR02824 132 FQRGGLKAGETVLIHGGASGIGTTAIQLAKAFGARVFTTAGS---DEKCAACEALGADIAI 189 (325)
T ss_pred HHhcCCCCCCEEEEEcCcchHHHHHHHHHHHcCCEEEEEeCC---HHHHHHHHHcCCcEEE
Confidence 345566777777777778999999999999999987665432 3344455667764443
No 275
>PRK06198 short chain dehydrogenase; Provisional
Probab=71.75 E-value=48 Score=26.36 Aligned_cols=56 Identities=16% Similarity=0.167 Sum_probs=37.4
Q ss_pred CeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCC--HHHHHHHHHcCCEEEEeCCC
Q 028618 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS--LERRIILRAFGAELVLTDPA 125 (206)
Q Consensus 70 ~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~--~~~~~~~~~~Ga~v~~~~~~ 125 (206)
+..+|+..+|..|..+|......|.+.++++..+.. ......++..|.++..+..+
T Consensus 7 k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D 64 (260)
T PRK06198 7 KVALVTGGTQGLGAAIARAFAERGAAGLVICGRNAEKGEAQAAELEALGAKAVFVQAD 64 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 367888888999999999999999984444433221 12233556678887665544
No 276
>PRK07774 short chain dehydrogenase; Provisional
Probab=71.74 E-value=39 Score=26.69 Aligned_cols=56 Identities=11% Similarity=0.086 Sum_probs=36.9
Q ss_pred CeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCH-HHHHHHHHcCCEEEEeCCC
Q 028618 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSL-ERRIILRAFGAELVLTDPA 125 (206)
Q Consensus 70 ~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~-~~~~~~~~~Ga~v~~~~~~ 125 (206)
++.+|+..+|--|.+++......|.+++++....... ...+.++..+.++..+..|
T Consensus 7 k~vlItGasg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~D 63 (250)
T PRK07774 7 KVAIVTGAAGGIGQAYAEALAREGASVVVADINAEGAERVAKQIVADGGTAIAVQVD 63 (250)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcC
Confidence 3678999999999999999999999887775542221 1123334445555544433
No 277
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=71.72 E-value=47 Score=26.76 Aligned_cols=55 Identities=15% Similarity=0.125 Sum_probs=33.5
Q ss_pred CeEEEeeCC--CchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHH-HHc-CCEEEEeCC
Q 028618 70 ESVLIEPTS--GNTGIGLAFMAAAKQYRLIITMPASMSLERRIIL-RAF-GAELVLTDP 124 (206)
Q Consensus 70 ~~~vv~aSs--GN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~-~~~-Ga~v~~~~~ 124 (206)
+..+|+..+ +.-|.++|....+.|.++++.-.......+++.+ +.. |.++..+..
T Consensus 8 k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 66 (257)
T PRK08594 8 KTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEVRELADTLEGQESLLLPC 66 (257)
T ss_pred CEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccchHHHHHHHHHcCCCceEEEec
Confidence 356777755 7899999999999999877664332222333333 222 445554443
No 278
>PRK10083 putative oxidoreductase; Provisional
Probab=71.65 E-value=51 Score=27.46 Aligned_cols=58 Identities=19% Similarity=0.230 Sum_probs=40.6
Q ss_pred HHcCCCCCCCeEEEeeCCCchHHHHHHHHHH-CCCcEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 028618 61 EAKGLITPGESVLIEPTSGNTGIGLAFMAAA-KQYRLIITMPASMSLERRIILRAFGAELVL 121 (206)
Q Consensus 61 ~~~g~~~~~~~~vv~aSsGN~g~alA~~a~~-~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~ 121 (206)
.+...+.++++.+|.+ +|-.|.+++..|+. +|.+.++.+.. .+.+.+.++.+|++-++
T Consensus 153 ~~~~~~~~g~~vlI~g-~g~vG~~~~~~a~~~~G~~~v~~~~~--~~~~~~~~~~~Ga~~~i 211 (339)
T PRK10083 153 TGRTGPTEQDVALIYG-AGPVGLTIVQVLKGVYNVKAVIVADR--IDERLALAKESGADWVI 211 (339)
T ss_pred HHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHhCCCCEEEEEcC--CHHHHHHHHHhCCcEEe
Confidence 3455567776666655 78888888888886 69886665433 56777778888886554
No 279
>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....
Probab=71.62 E-value=26 Score=26.81 Aligned_cols=68 Identities=24% Similarity=0.110 Sum_probs=42.5
Q ss_pred eEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCC-----CCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHH
Q 028618 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPAS-----MSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEI 138 (206)
Q Consensus 71 ~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~-----~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~ 138 (206)
.-+|+...|..|..+|..-...+-.-++++... .....++.++..|++|.....|-...+.++.+.+.
T Consensus 2 tylitGG~gglg~~la~~La~~~~~~~il~~r~~~~~~~~~~~i~~l~~~g~~v~~~~~Dv~d~~~v~~~~~~ 74 (181)
T PF08659_consen 2 TYLITGGLGGLGQSLARWLAERGARRLILLGRSGAPSAEAEAAIRELESAGARVEYVQCDVTDPEAVAAALAQ 74 (181)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTT-SEEEEEESSGGGSTTHHHHHHHHHHTT-EEEEEE--TTSHHHHHHHHHT
T ss_pred EEEEECCccHHHHHHHHHHHHcCCCEEEEeccCCCccHHHHHHHHHHHhCCCceeeeccCccCHHHHHHHHHH
Confidence 357788889999999988877765555555333 23456788899999999887653223344444333
No 280
>PRK08177 short chain dehydrogenase; Provisional
Probab=71.42 E-value=47 Score=25.95 Aligned_cols=33 Identities=21% Similarity=0.300 Sum_probs=27.7
Q ss_pred eEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCC
Q 028618 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPAS 103 (206)
Q Consensus 71 ~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~ 103 (206)
..+|+..+|.-|.++|......|.+++++....
T Consensus 3 ~vlItG~sg~iG~~la~~l~~~G~~V~~~~r~~ 35 (225)
T PRK08177 3 TALIIGASRGLGLGLVDRLLERGWQVTATVRGP 35 (225)
T ss_pred EEEEeCCCchHHHHHHHHHHhCCCEEEEEeCCC
Confidence 568889999999999999999999887776543
No 281
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=71.29 E-value=42 Score=26.96 Aligned_cols=53 Identities=19% Similarity=0.135 Sum_probs=35.9
Q ss_pred CeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHH-HcCCEEEEeCCC
Q 028618 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILR-AFGAELVLTDPA 125 (206)
Q Consensus 70 ~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~-~~Ga~v~~~~~~ 125 (206)
+..+|+..+|.-|.++|......|.+++++-.. ..+.+.+. ..+.++..+..+
T Consensus 6 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~---~~~~~~l~~~~~~~~~~~~~D 59 (262)
T TIGR03325 6 EVVLVTGGASGLGRAIVDRFVAEGARVAVLDKS---AAGLQELEAAHGDAVVGVEGD 59 (262)
T ss_pred cEEEEECCCChHHHHHHHHHHHCCCEEEEEeCC---HHHHHHHHhhcCCceEEEEec
Confidence 467888899999999999999999987776432 23333333 346556555433
No 282
>PRK07985 oxidoreductase; Provisional
Probab=71.20 E-value=37 Score=28.05 Aligned_cols=56 Identities=16% Similarity=0.158 Sum_probs=37.5
Q ss_pred CeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCC---HHHHHHHHHcCCEEEEeCCC
Q 028618 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS---LERRIILRAFGAELVLTDPA 125 (206)
Q Consensus 70 ~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~---~~~~~~~~~~Ga~v~~~~~~ 125 (206)
+..+|+..+|.-|.++|......|.++++....... +...+.++..|.++..+..|
T Consensus 50 k~vlITGas~gIG~aia~~L~~~G~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 108 (294)
T PRK07985 50 RKALVTGGDSGIGRAAAIAYAREGADVAISYLPVEEEDAQDVKKIIEECGRKAVLLPGD 108 (294)
T ss_pred CEEEEECCCCcHHHHHHHHHHHCCCEEEEecCCcchhhHHHHHHHHHHcCCeEEEEEcc
Confidence 368999999999999999999999998775432211 11222344567776655443
No 283
>PRK08264 short chain dehydrogenase; Validated
Probab=71.16 E-value=23 Score=27.83 Aligned_cols=33 Identities=12% Similarity=0.127 Sum_probs=27.5
Q ss_pred CeEEEeeCCCchHHHHHHHHHHCCC-cEEEEeCC
Q 028618 70 ESVLIEPTSGNTGIGLAFMAAAKQY-RLIITMPA 102 (206)
Q Consensus 70 ~~~vv~aSsGN~g~alA~~a~~~g~-~~~ivvp~ 102 (206)
+..+|+..+|.-|.++|......|. +++++...
T Consensus 7 ~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~ 40 (238)
T PRK08264 7 KVVLVTGANRGIGRAFVEQLLARGAAKVYAAARD 40 (238)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCcccEEEEecC
Confidence 3678889999999999999999998 77666543
No 284
>PRK06953 short chain dehydrogenase; Provisional
Probab=71.14 E-value=47 Score=25.87 Aligned_cols=52 Identities=31% Similarity=0.297 Sum_probs=37.8
Q ss_pred eEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCC
Q 028618 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPA 125 (206)
Q Consensus 71 ~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~ 125 (206)
..+|+..+|.-|.++|......|.+++++... +.+.+.++..+.+.+.++-.
T Consensus 3 ~vlvtG~sg~iG~~la~~L~~~G~~v~~~~r~---~~~~~~~~~~~~~~~~~D~~ 54 (222)
T PRK06953 3 TVLIVGASRGIGREFVRQYRADGWRVIATARD---AAALAALQALGAEALALDVA 54 (222)
T ss_pred eEEEEcCCCchhHHHHHHHHhCCCEEEEEECC---HHHHHHHHhccceEEEecCC
Confidence 56888889999999999888889987776543 23444555567776666654
No 285
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=71.12 E-value=34 Score=27.28 Aligned_cols=56 Identities=9% Similarity=0.085 Sum_probs=37.8
Q ss_pred CeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCH-HHHHHHHHcCCEEEEeCCC
Q 028618 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSL-ERRIILRAFGAELVLTDPA 125 (206)
Q Consensus 70 ~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~-~~~~~~~~~Ga~v~~~~~~ 125 (206)
+..+|+..+|.-|.+++......|.+++++.+..... .....++..|.++..+..|
T Consensus 12 k~vlVtG~s~gIG~~la~~l~~~G~~vv~~~r~~~~~~~~~~~l~~~~~~~~~~~~D 68 (255)
T PRK06113 12 KCAIITGAGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQLGGQAFACRCD 68 (255)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcc
Confidence 4788889999999999999999999887765442211 1223345567666555443
No 286
>cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo
Probab=71.03 E-value=29 Score=28.71 Aligned_cols=39 Identities=31% Similarity=0.348 Sum_probs=30.6
Q ss_pred HcCCCCCCCeEEEeeCCCchHHHHHHHHHHCCCcEEEEe
Q 028618 62 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITM 100 (206)
Q Consensus 62 ~~g~~~~~~~~vv~aSsGN~g~alA~~a~~~g~~~~ivv 100 (206)
+...+.+++..+|...+|..|.+++..|+.+|.+++++.
T Consensus 156 ~~~~~~~g~~vlI~g~~g~vg~~~~~~a~~~G~~v~~~~ 194 (325)
T cd08264 156 KTAGLGPGETVVVFGASGNTGIFAVQLAKMMGAEVIAVS 194 (325)
T ss_pred HhcCCCCCCEEEEECCCchHHHHHHHHHHHcCCeEEEEe
Confidence 335567776777777779999999999999999876653
No 287
>PLN02827 Alcohol dehydrogenase-like
Probab=70.99 E-value=39 Score=29.15 Aligned_cols=57 Identities=23% Similarity=0.257 Sum_probs=40.2
Q ss_pred HcCCCCCCCeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 028618 62 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 121 (206)
Q Consensus 62 ~~g~~~~~~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~ 121 (206)
+.+.+.+|+..+|.+ .|--|.+++..|+.+|.+.++.+.. ++.+.+.++.+|++-++
T Consensus 187 ~~~~~~~g~~VlV~G-~G~vG~~~iqlak~~G~~~vi~~~~--~~~~~~~a~~lGa~~~i 243 (378)
T PLN02827 187 NVADVSKGSSVVIFG-LGTVGLSVAQGAKLRGASQIIGVDI--NPEKAEKAKTFGVTDFI 243 (378)
T ss_pred hhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCeEEEECC--CHHHHHHHHHcCCcEEE
Confidence 345567776666664 6889999999999999865544432 45677777888986443
No 288
>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=70.88 E-value=41 Score=29.45 Aligned_cols=95 Identities=15% Similarity=0.102 Sum_probs=64.6
Q ss_pred eEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCC-hHHHHHHHHHHHHh-CCCeEEc
Q 028618 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKG-MKGAVQKAEEILAK-TPNAYML 148 (206)
Q Consensus 71 ~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~-~~~~~~~a~~~~~~-~~~~~~~ 148 (206)
+..+..+||-.++.+|+.+-..|=.-.|++|.-+.......+...||+.+++|-+.. +.=..+..++...+ ......+
T Consensus 50 k~ava~~sgT~AL~laL~al~ig~GDeVI~ps~TfvATan~i~~~Ga~PVFvDid~~T~nid~~~ie~aIt~~tKAIipV 129 (374)
T COG0399 50 KYAVAVSSGTAALHLALLALAIGPGDEVIVPSFTFVATANAVLLVGAKPVFVDIDPDTLNIDPDLIEAAITPRTKAIIPV 129 (374)
T ss_pred CeEEEecChHHHHHHHHHhcCCCCCCEEEecCCchHHHHHHHHHcCCeEEEEecCCcccCCCHHHHHHHcccCCeEEEEe
Confidence 467778889998888888655666678999999999999999999999999986631 21111222222222 2234567
Q ss_pred CCCCCCccHHHHHHhHHH
Q 028618 149 QQFENPANPKIHYETTGP 166 (206)
Q Consensus 149 ~~~~~~~~~~~g~~t~~~ 166 (206)
+-++++.. +.....++.
T Consensus 130 hl~G~~~d-m~~i~~la~ 146 (374)
T COG0399 130 HLAGQPCD-MDAIMALAK 146 (374)
T ss_pred hhccCCCC-HHHHHHHHH
Confidence 88888876 555555553
No 289
>PRK05370 argininosuccinate synthase; Validated
Probab=70.79 E-value=80 Score=28.36 Aligned_cols=131 Identities=17% Similarity=0.062 Sum_probs=71.4
Q ss_pred CCCeEEEeeCCCc-hHHHHHHHHHHCCCcEEEEeCC-CC-----CHHHHHHHHHcCC-EEEEeCCCCCh-HHHHHHHHHH
Q 028618 68 PGESVLIEPTSGN-TGIGLAFMAAAKQYRLIITMPA-SM-----SLERRIILRAFGA-ELVLTDPAKGM-KGAVQKAEEI 138 (206)
Q Consensus 68 ~~~~~vv~aSsGN-~g~alA~~a~~~g~~~~ivvp~-~~-----~~~~~~~~~~~Ga-~v~~~~~~~~~-~~~~~~a~~~ 138 (206)
+|++.++..|+|. +...+-|.-.. |++++.|.-+ .. -....+....+|| +++.++....+ ++.+ .+.+.
T Consensus 10 ~~~KVvLAYSGGLDTSv~l~wL~e~-~~eVia~~aDvGQ~~~ed~~~i~~kA~~~GA~~~~viDlr~eF~e~~i-~aI~a 87 (447)
T PRK05370 10 VGQRVGIAFSGGLDTSAALLWMRQK-GAVPYAYTANLGQPDEDDYDAIPRRAMEYGAENARLIDCRAQLVAEGI-AAIQC 87 (447)
T ss_pred CCCEEEEEecCCchHHHHHHHHHhc-CCeEEEEEEECCCCCccchHHHHHHHHHhCCCEEEEeccHHHHHHHHH-HHHHc
Confidence 3445566667764 44555555554 9999988744 22 1344566788999 68888864322 2222 22211
Q ss_pred HHhC----CCeEEcCCCCCCccHHHHHHhHHHHHHhhhCCCCCEEEEcc-CcchHHHHHHHHHHhcCCCCeEC
Q 028618 139 LAKT----PNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGI-GTGGTITGAGKFLKEKNPNIKVR 206 (206)
Q Consensus 139 ~~~~----~~~~~~~~~~~~~~~~~g~~t~~~Ei~~q~~~~~d~vv~~v-G~Gg~~aGi~~~~k~~~p~~~vi 206 (206)
-.-+ .+.|+. .+ ....|.. .....|+.++. ..|+|...+ |-|-=..=.=.+++.+.|+.+||
T Consensus 88 nA~Y~~~~e~~Y~l-~t-~LaRpli--a~~lv~~A~~~--ga~aIAHG~TGKGNDQvRFE~~~~aL~P~l~Vi 154 (447)
T PRK05370 88 GAFHISTGGVTYFN-TT-PLGRAVT--GTMLVAAMKED--GVNIWGDGSTYKGNDIERFYRYGLLTNPELKIY 154 (447)
T ss_pred CCccccccCccccC-CC-cchHHHH--HHHHHHHHHHh--CCcEEEEcCCCCCCchHHHHHHHHHhCCCCeEe
Confidence 1100 122222 11 1111111 12223444444 367777654 66777777788889999999886
No 290
>PRK07550 hypothetical protein; Provisional
Probab=70.79 E-value=68 Score=27.54 Aligned_cols=77 Identities=14% Similarity=0.116 Sum_probs=43.6
Q ss_pred CCChhhHHHHHHHHHHHHcCC-CCCCCeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeC
Q 028618 45 CSSVKDRIGYSMISDAEAKGL-ITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTD 123 (206)
Q Consensus 45 tGS~K~R~a~~~~~~a~~~g~-~~~~~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~ 123 (206)
.|.-..|.+..-.. ....|. ..+ ..|+..+++.++..++..+- .+-.-.|++|.-.-..-...++..|++++.++
T Consensus 67 ~G~~~lr~~ia~~~-~~~~g~~~~~--~~i~~t~G~~~al~~~~~~l-~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~ 142 (386)
T PRK07550 67 EGLPELREAYAAHY-SRLYGAAISP--EQVHITSGCNQAFWAAMVTL-AGAGDEVILPLPWYFNHKMWLDMLGIRPVYLP 142 (386)
T ss_pred CCCHHHHHHHHHHH-HHHhCCCCCc--ceEEEecCcHHHHHHHHHHh-cCCCCEEEEcCCCCcchHHHHHhcCCEEEEEe
Confidence 36666664443322 122232 333 34666666677776665443 33334566666444444556789999999998
Q ss_pred CC
Q 028618 124 PA 125 (206)
Q Consensus 124 ~~ 125 (206)
.+
T Consensus 143 ~~ 144 (386)
T PRK07550 143 CD 144 (386)
T ss_pred cC
Confidence 64
No 291
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=70.59 E-value=43 Score=26.63 Aligned_cols=52 Identities=19% Similarity=0.167 Sum_probs=35.0
Q ss_pred eEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHH-HHcCCEEEEeCCC
Q 028618 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIIL-RAFGAELVLTDPA 125 (206)
Q Consensus 71 ~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~-~~~Ga~v~~~~~~ 125 (206)
..+|+..+|..|.++|......|.+++++... +.+.+.+ ...+.++..+..|
T Consensus 2 ~vlItGasg~iG~~la~~l~~~G~~V~~~~r~---~~~~~~~~~~~~~~~~~~~~D 54 (248)
T PRK10538 2 IVLVTGATAGFGECITRRFIQQGHKVIATGRR---QERLQELKDELGDNLYIAQLD 54 (248)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEECC---HHHHHHHHHHhccceEEEEec
Confidence 46888999999999999999999987766443 2233322 3346565555433
No 292
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=70.53 E-value=21 Score=32.68 Aligned_cols=52 Identities=25% Similarity=0.142 Sum_probs=42.4
Q ss_pred eEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCC
Q 028618 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPA 125 (206)
Q Consensus 71 ~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~ 125 (206)
.+++....|+.|+.+|-.-+..|.+++++=+ .+.+.+.++..|.+++.-+..
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~---d~~~~~~~~~~g~~~i~GD~~ 469 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIET---SRTRVDELRERGIRAVLGNAA 469 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEEEEEC---CHHHHHHHHHCCCeEEEcCCC
Confidence 4688899999999999999999999877733 456677778888888877665
No 293
>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.
Probab=70.52 E-value=39 Score=27.81 Aligned_cols=52 Identities=29% Similarity=0.425 Sum_probs=38.0
Q ss_pred CCCCCCCeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCE
Q 028618 64 GLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAE 118 (206)
Q Consensus 64 g~~~~~~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~ 118 (206)
..+.++++.+|...+|..|.+++..++..|.+++++... +.+.+.++.+|++
T Consensus 158 ~~~~~~~~vlI~ga~g~vG~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~~~~ 209 (332)
T cd08259 158 AGVKKGDTVLVTGAGGGVGIHAIQLAKALGARVIAVTRS---PEKLKILKELGAD 209 (332)
T ss_pred hCCCCCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEeCC---HHHHHHHHHcCCc
Confidence 556677677888888999999999999999998777543 2344444555653
No 294
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=70.48 E-value=19 Score=27.39 Aligned_cols=50 Identities=22% Similarity=0.300 Sum_probs=40.2
Q ss_pred eEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeC
Q 028618 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTD 123 (206)
Q Consensus 71 ~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~ 123 (206)
..++...+||-|.+.+.+++.+|.+++++ +..+.+.+..+..++..+.++
T Consensus 21 ~~vvv~G~G~vg~gA~~~~~~lGa~v~~~---d~~~~~~~~~~~~~~~~i~~~ 70 (168)
T PF01262_consen 21 AKVVVTGAGRVGQGAAEIAKGLGAEVVVP---DERPERLRQLESLGAYFIEVD 70 (168)
T ss_dssp -EEEEESTSHHHHHHHHHHHHTT-EEEEE---ESSHHHHHHHHHTTTEESEET
T ss_pred eEEEEECCCHHHHHHHHHHhHCCCEEEec---cCCHHHHHhhhcccCceEEEc
Confidence 46788889999999999999999987666 345677788889999888885
No 295
>KOG1177 consensus Long chain fatty acid acyl-CoA ligase [Lipid transport and metabolism]
Probab=70.37 E-value=56 Score=29.83 Aligned_cols=109 Identities=17% Similarity=0.115 Sum_probs=75.3
Q ss_pred eEEEEeCCCCCCCChhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHH
Q 028618 34 RIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILR 113 (206)
Q Consensus 34 ~i~~K~E~~~ptGS~K~R~a~~~~~~a~~~g~~~~~~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~ 113 (206)
.+-++.|....|+|-=.-.+..+..-...-| +++|++.-+.++-..+=.-..++|++.|+-.+-+=|.-.+++..-.++
T Consensus 68 a~Vf~~eg~R~Tf~~~~~ev~slAaGll~lG-L~kGDrVgvwgpN~~~w~l~~lA~A~AG~v~v~~NP~Yq~~elr~~L~ 146 (596)
T KOG1177|consen 68 AAVFDHEGIRLTFSEFVSEVESLAAGLLSLG-LKKGDRVGVWGPNSYEWVLCQLACARAGLVLVNLNPAYQSEELRYVLK 146 (596)
T ss_pred EEEEeeccchhhHHHHHHHHHHHHhhHHhhc-CCCCCEEEEecCChHHHHHHHHHHHHhceEEeccCcccccHHHHHHHh
Confidence 4667888887775433345555555556666 466667667776666677788999999997777778878888888999
Q ss_pred HcCCEEEEeCCCCC----hHHHHHHHHHHHHhCC
Q 028618 114 AFGAELVLTDPAKG----MKGAVQKAEEILAKTP 143 (206)
Q Consensus 114 ~~Ga~v~~~~~~~~----~~~~~~~a~~~~~~~~ 143 (206)
..|+.+.+.+.... ++-..+.+-+....++
T Consensus 147 k~~~k~l~~p~~~k~~ny~~~l~~icPEv~~~~~ 180 (596)
T KOG1177|consen 147 KVGCKALFAPPQFKTQNYYETLLEICPEVMRGDP 180 (596)
T ss_pred hcCeEEEEccchhhhchHHHHHHHhhHHhhcCCC
Confidence 99999999987631 2233444444444443
No 296
>cd08251 polyketide_synthase polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde a
Probab=70.34 E-value=55 Score=26.31 Aligned_cols=54 Identities=24% Similarity=0.369 Sum_probs=39.4
Q ss_pred HcCCCCCCCeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCE
Q 028618 62 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAE 118 (206)
Q Consensus 62 ~~g~~~~~~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~ 118 (206)
+.+.+.+++..++...+|..|.++...++.+|++++++.+. ..+.+.++.+|++
T Consensus 114 ~~~~~~~g~~vli~~~~~~~g~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~~ 167 (303)
T cd08251 114 ARAGLAKGEHILIQTATGGTGLMAVQLARLKGAEIYATASS---DDKLEYLKQLGVP 167 (303)
T ss_pred HhcCCCCCCEEEEecCCcHHHHHHHHHHHHcCCEEEEEcCC---HHHHHHHHHcCCC
Confidence 45667777666776778999999999999999986666443 3455556667764
No 297
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=70.16 E-value=37 Score=28.40 Aligned_cols=65 Identities=17% Similarity=0.046 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHcCCCCCCCeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCE
Q 028618 51 RIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAE 118 (206)
Q Consensus 51 R~a~~~~~~a~~~g~~~~~~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~ 118 (206)
=.+...+..+.+........+++..-..|+.|.++|..++.+|.+++++-+. +.+......+|.+
T Consensus 132 ~~Ae~ai~~al~~~~~~l~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~---~~~~~~~~~~g~~ 196 (287)
T TIGR02853 132 PTAEGAIMMAIEHTDFTIHGSNVMVLGFGRTGMTIARTFSALGARVFVGARS---SADLARITEMGLI 196 (287)
T ss_pred hHHHHHHHHHHHhcCCCCCCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCC---HHHHHHHHHCCCe
Confidence 3455555555443211222356777788999999999999999987766443 2334444555654
No 298
>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional
Probab=69.91 E-value=47 Score=28.58 Aligned_cols=55 Identities=16% Similarity=0.131 Sum_probs=39.7
Q ss_pred eEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCC
Q 028618 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPA 125 (206)
Q Consensus 71 ~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~ 125 (206)
..++..++|..|..++..+...+-.-.|++|.-+-......++..|++++.++.+
T Consensus 47 ~~~v~~~sgt~al~~~l~~~~~~~Gd~Viv~~~t~~~~~~~~~~~G~~~v~~d~d 101 (375)
T PRK11706 47 AKVLLTPSCTAALEMAALLLDIQPGDEVIMPSYTFVSTANAFVLRGAKIVFVDIR 101 (375)
T ss_pred CeEEEECCHHHHHHHHHHHhCCCCCCEEEECCCCcHHHHHHHHHcCCEEEEEecC
Confidence 3567778888877666554333333567888877777788889999999999854
No 299
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=69.87 E-value=17 Score=33.98 Aligned_cols=53 Identities=21% Similarity=0.220 Sum_probs=40.8
Q ss_pred eEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCC---------C---------HHHHHHHHHcCCEEEEeC
Q 028618 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASM---------S---------LERRIILRAFGAELVLTD 123 (206)
Q Consensus 71 ~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~---------~---------~~~~~~~~~~Ga~v~~~~ 123 (206)
+.++.-.+|-.|++.|+..++.|.++++|=.... + ....+.++.+|.+++.-.
T Consensus 311 kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~~gip~~~l~~~~~~~~~~~~~~~Gv~~~~~~ 381 (639)
T PRK12809 311 EKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLTFGIPPFKLDKTVLSQRREIFTAMGIDFHLNC 381 (639)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeeeccCCcccCCHHHHHHHHHHHHHCCeEEEcCC
Confidence 5688889999999999999999999988853321 1 135667789999887543
No 300
>PRK10490 sensor protein KdpD; Provisional
Probab=69.70 E-value=74 Score=31.17 Aligned_cols=107 Identities=10% Similarity=0.023 Sum_probs=62.3
Q ss_pred eEEEeeCCCchHHHH----HHHHHHCCCcEEEEeCCC-----CCH-------HHHHHHHHcCCEEEEeCCCCChHHHHHH
Q 028618 71 SVLIEPTSGNTGIGL----AFMAAAKQYRLIITMPAS-----MSL-------ERRIILRAFGAELVLTDPAKGMKGAVQK 134 (206)
Q Consensus 71 ~~vv~aSsGN~g~al----A~~a~~~g~~~~ivvp~~-----~~~-------~~~~~~~~~Ga~v~~~~~~~~~~~~~~~ 134 (206)
+.+|+-|++-++..+ +-.|.+++-+.+++.-++ .+. ..++..+.+||+++.+.+++ ..+.
T Consensus 252 riLV~v~~~~~~~~lIr~~~rlA~~~~a~~~~l~V~~~~~~~~~~~~~~~l~~~~~lA~~lGa~~~~~~~~d----va~~ 327 (895)
T PRK10490 252 AILLCIGHNTGSEKLVRTAARLAARLGSVWHAVYVETPRLHRLPEKKRRAILSALRLAQELGAETATLSDPA----EEKA 327 (895)
T ss_pred eEEEEECCCcchHHHHHHHHHHHHhcCCCEEEEEEecCCcCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCC----HHHH
Confidence 467777777666444 456677787776654221 111 22345678999999887763 3344
Q ss_pred HHHHHHhCCC-eEEcCCCCCCccHHHHHHhHHHHHHhhhCCCCCEEEEccC
Q 028618 135 AEEILAKTPN-AYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIG 184 (206)
Q Consensus 135 a~~~~~~~~~-~~~~~~~~~~~~~~~g~~t~~~Ei~~q~~~~~d~vv~~vG 184 (206)
..+++++.+- ...+.+..... | ...+++...+++.. +.+|..++|..
T Consensus 328 i~~~A~~~~vt~IViG~s~~~~-~-~~~~s~~~~l~r~~-~~idi~iv~~~ 375 (895)
T PRK10490 328 VLRYAREHNLGKIIIGRRASRR-W-WRRESFADRLARLG-PDLDLVIVALD 375 (895)
T ss_pred HHHHHHHhCCCEEEECCCCCCC-C-ccCCCHHHHHHHhC-CCCCEEEEeCC
Confidence 4456666532 24455443332 2 22346777888876 56887777643
No 301
>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family. This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous
Probab=69.46 E-value=64 Score=26.70 Aligned_cols=55 Identities=20% Similarity=0.318 Sum_probs=39.4
Q ss_pred cCCCCCCCeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEE
Q 028618 63 KGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAEL 119 (206)
Q Consensus 63 ~g~~~~~~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v 119 (206)
.+.+.+++..+|.+ +|..|.+++..|+.+|.++++ +-.+....+.+.++.+|++-
T Consensus 159 ~~~~~~g~~vlI~g-~g~~g~~~~~la~~~G~~v~~-~~~~~~~~~~~~~~~~g~~~ 213 (306)
T cd08258 159 RSGIRPGDTVVVFG-PGPIGLLAAQVAKLQGATVVV-VGTEKDEVRLDVAKELGADA 213 (306)
T ss_pred hcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCEEEE-ECCCCCHHHHHHHHHhCCcc
Confidence 34456666667754 789999999999999998543 32333466777888899853
No 302
>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional
Probab=69.42 E-value=48 Score=28.63 Aligned_cols=53 Identities=19% Similarity=0.206 Sum_probs=35.5
Q ss_pred EEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCC
Q 028618 73 LIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPA 125 (206)
Q Consensus 73 vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~ 125 (206)
++..++|..|..++..+-..+=.-.|++|..+-......+...|++++.++-+
T Consensus 51 ~v~~~sgt~al~lal~al~~~~Gd~Viv~~~~~~~~~~~~~~~G~~~v~vd~~ 103 (379)
T PRK11658 51 AIAVSSATAGMHITLMALGIGPGDEVITPSLTWVSTLNMIVLLGATPVMVDVD 103 (379)
T ss_pred EEEECCHHHHHHHHHHHcCCCCCCEEEECCCcHHHHHHHHHHcCCEEEEEecC
Confidence 45567777776666655322222467777766666677788899999999754
No 303
>CHL00194 ycf39 Ycf39; Provisional
Probab=69.40 E-value=31 Score=28.81 Aligned_cols=32 Identities=19% Similarity=0.256 Sum_probs=27.8
Q ss_pred eEEEeeCCCchHHHHHHHHHHCCCcEEEEeCC
Q 028618 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPA 102 (206)
Q Consensus 71 ~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~ 102 (206)
+.+|+..+|..|..++......|.+++++...
T Consensus 2 kIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~ 33 (317)
T CHL00194 2 SLLVIGATGTLGRQIVRQALDEGYQVRCLVRN 33 (317)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCCeEEEEEcC
Confidence 46888999999999999998899998888754
No 304
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=69.39 E-value=69 Score=27.29 Aligned_cols=57 Identities=21% Similarity=0.260 Sum_probs=39.2
Q ss_pred cCCCCCCCeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEEEe
Q 028618 63 KGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLT 122 (206)
Q Consensus 63 ~g~~~~~~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~ 122 (206)
...+.+++..+|. .+|..|.+++..|+.+|.+.++.+.. ++.|.+.++.+|++.++.
T Consensus 181 ~~~~~~g~~vlI~-g~g~vG~~~~~la~~~G~~~v~~~~~--~~~k~~~~~~~g~~~~i~ 237 (365)
T cd08278 181 VLKPRPGSSIAVF-GAGAVGLAAVMAAKIAGCTTIIAVDI--VDSRLELAKELGATHVIN 237 (365)
T ss_pred hcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEeC--CHHHHHHHHHcCCcEEec
Confidence 4456666666666 56899999999999999974444333 356666777788754443
No 305
>cd08249 enoyl_reductase_like enoyl_reductase_like. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol de
Probab=69.29 E-value=34 Score=28.75 Aligned_cols=51 Identities=25% Similarity=0.350 Sum_probs=37.6
Q ss_pred CCCCeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 028618 67 TPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 121 (206)
Q Consensus 67 ~~~~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~ 121 (206)
.+++..+|...+|..|.+++..|+.+|++++... . +.+.+.++.+|++-++
T Consensus 153 ~~~~~vlI~ga~g~vg~~~~~~a~~~G~~v~~~~-~---~~~~~~~~~~g~~~v~ 203 (339)
T cd08249 153 SKGKPVLIWGGSSSVGTLAIQLAKLAGYKVITTA-S---PKNFDLVKSLGADAVF 203 (339)
T ss_pred CCCCEEEEEcChhHHHHHHHHHHHHcCCeEEEEE-C---cccHHHHHhcCCCEEE
Confidence 5666677777789999999999999999876654 2 2566666778874443
No 306
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=69.16 E-value=61 Score=26.39 Aligned_cols=56 Identities=29% Similarity=0.358 Sum_probs=38.9
Q ss_pred HcCCCCCCCeEEEeeCCCchHHHHHHHHHHCCCc-EEEEeCCCCCHHHHHHHHHcCCEEEE
Q 028618 62 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYR-LIITMPASMSLERRIILRAFGAELVL 121 (206)
Q Consensus 62 ~~g~~~~~~~~vv~aSsGN~g~alA~~a~~~g~~-~~ivvp~~~~~~~~~~~~~~Ga~v~~ 121 (206)
+...+.+++..+|.+ +|-.|.+++..|+.+|++ ++++.+ .+.+.+.++.+|++-+.
T Consensus 123 ~~~~~~~~~~vlI~g-~g~vg~~~~~la~~~g~~~v~~~~~---~~~~~~~~~~~g~~~~~ 179 (312)
T cd08269 123 RRGWIRAGKTVAVIG-AGFIGLLFLQLAAAAGARRVIAIDR---RPARLALARELGATEVV 179 (312)
T ss_pred HhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCcEEEEECC---CHHHHHHHHHhCCceEe
Confidence 345566776777764 678999999999999999 544322 34566677778875443
No 307
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=69.16 E-value=35 Score=28.60 Aligned_cols=52 Identities=29% Similarity=0.376 Sum_probs=37.2
Q ss_pred CCCCeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 028618 67 TPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 121 (206)
Q Consensus 67 ~~~~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~ 121 (206)
.+++..+|.+ .|..|.+++..|+.+|++.+++. ..++.|....+.+|++-++
T Consensus 162 ~~g~~vlV~g-~g~vg~~~~~la~~~G~~~v~~~--~~~~~~~~~~~~~g~~~~~ 213 (341)
T cd05281 162 VSGKSVLITG-CGPIGLMAIAVAKAAGASLVIAS--DPNPYRLELAKKMGADVVI 213 (341)
T ss_pred CCCCEEEEEC-CCHHHHHHHHHHHHcCCcEEEEE--CCCHHHHHHHHHhCcceee
Confidence 4555667754 68999999999999998544454 3455777777788875443
No 308
>PRK09072 short chain dehydrogenase; Provisional
Probab=69.09 E-value=38 Score=27.16 Aligned_cols=33 Identities=33% Similarity=0.358 Sum_probs=27.9
Q ss_pred CeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCC
Q 028618 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPA 102 (206)
Q Consensus 70 ~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~ 102 (206)
+..+|+..+|-.|.+++......|.+++++...
T Consensus 6 ~~vlItG~s~~iG~~ia~~l~~~G~~V~~~~r~ 38 (263)
T PRK09072 6 KRVLLTGASGGIGQALAEALAAAGARLLLVGRN 38 (263)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEECC
Confidence 367888899999999999999999987777654
No 309
>PRK05650 short chain dehydrogenase; Provisional
Probab=68.86 E-value=45 Score=26.90 Aligned_cols=55 Identities=20% Similarity=0.210 Sum_probs=38.3
Q ss_pred eEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCC-HHHHHHHHHcCCEEEEeCCC
Q 028618 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLTDPA 125 (206)
Q Consensus 71 ~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~-~~~~~~~~~~Ga~v~~~~~~ 125 (206)
+.+|+..+|.-|.+++......|.+++++...... +.....++..|.++..+..|
T Consensus 2 ~vlVtGasggIG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~D 57 (270)
T PRK05650 2 RVMITGAASGLGRAIALRWAREGWRLALADVNEEGGEETLKLLREAGGDGFYQRCD 57 (270)
T ss_pred EEEEecCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCceEEEEcc
Confidence 46888999999999999999999988777654322 22233455667777665544
No 310
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=68.73 E-value=22 Score=31.57 Aligned_cols=52 Identities=13% Similarity=0.054 Sum_probs=40.8
Q ss_pred eEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCC-----CCHHHHHHHHHcCCEEEEe
Q 028618 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPAS-----MSLERRIILRAFGAELVLT 122 (206)
Q Consensus 71 ~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~-----~~~~~~~~~~~~Ga~v~~~ 122 (206)
+.++...+||.|.-+|..+.++|.+++++.... .....++.++..|.+++.-
T Consensus 273 k~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~~~~~~~~~~~~~~l~~~GV~~~~~ 329 (449)
T TIGR01316 273 KSVVVIGGGNTAVDSARTALRLGAEVHCLYRRTREDMTARVEEIAHAEEEGVKFHFL 329 (449)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEeecCcccCCCCHHHHHHHHhCCCEEEec
Confidence 468888999999999999999999999987653 2334456678888887743
No 311
>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases. Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so
Probab=68.68 E-value=44 Score=27.47 Aligned_cols=48 Identities=25% Similarity=0.311 Sum_probs=35.1
Q ss_pred eEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 028618 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 121 (206)
Q Consensus 71 ~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~ 121 (206)
..+|...+|..|.+++..|+.+|.+++++.+ ++.+++.++.+|++-+.
T Consensus 149 ~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~~~~~ 196 (325)
T cd05280 149 PVLVTGATGGVGSIAVAILAKLGYTVVALTG---KEEQADYLKSLGASEVL 196 (325)
T ss_pred EEEEECCccHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHhcCCcEEE
Confidence 5566666799999999999999998555533 34566667778875443
No 312
>PRK09291 short chain dehydrogenase; Provisional
Probab=68.65 E-value=21 Score=28.45 Aligned_cols=54 Identities=19% Similarity=0.157 Sum_probs=36.2
Q ss_pred eEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHH-HHHHHHHcCCEEEEeCC
Q 028618 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLE-RRIILRAFGAELVLTDP 124 (206)
Q Consensus 71 ~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~-~~~~~~~~Ga~v~~~~~ 124 (206)
..+|+..+|..|.+++......|.++++......... ..+.....|.++..+..
T Consensus 4 ~vlVtGasg~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~ 58 (257)
T PRK09291 4 TILITGAGSGFGREVALRLARKGHNVIAGVQIAPQVTALRAEAARRGLALRVEKL 58 (257)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcceEEEe
Confidence 5789999999999999999999999888765432111 12233445555544433
No 313
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=68.52 E-value=63 Score=26.84 Aligned_cols=57 Identities=19% Similarity=0.206 Sum_probs=39.2
Q ss_pred HcCCCCCCCeEEEeeCCCchHHHHHHHHHH-CCCcEEEEeCCCCCHHHHHHHHHcCCEEEEe
Q 028618 62 AKGLITPGESVLIEPTSGNTGIGLAFMAAA-KQYRLIITMPASMSLERRIILRAFGAELVLT 122 (206)
Q Consensus 62 ~~g~~~~~~~~vv~aSsGN~g~alA~~a~~-~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~ 122 (206)
+...+.+++..+|.+ +|-.|.+++..|+. .|.++++..+ ++.+.+.++.+|++.++.
T Consensus 156 ~~~~~~~g~~vlV~g-~g~vG~~~~~la~~~~g~~v~~~~~---~~~~~~~~~~~g~~~v~~ 213 (338)
T PRK09422 156 KVSGIKPGQWIAIYG-AGGLGNLALQYAKNVFNAKVIAVDI---NDDKLALAKEVGADLTIN 213 (338)
T ss_pred HhcCCCCCCEEEEEC-CcHHHHHHHHHHHHhCCCeEEEEeC---ChHHHHHHHHcCCcEEec
Confidence 344567776777776 68899999999987 5988655533 335666667788765543
No 314
>TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase. This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041).
Probab=68.46 E-value=45 Score=28.92 Aligned_cols=55 Identities=16% Similarity=0.107 Sum_probs=36.9
Q ss_pred eEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCC
Q 028618 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPA 125 (206)
Q Consensus 71 ~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~ 125 (206)
..++..++|..|..++..+-..+=.-.|++|..+-......+...|+++++++-+
T Consensus 47 ~~~v~~~sgt~aL~~~l~al~~~pGd~Viv~~~t~~~~~~~~~~~G~~~v~vd~d 101 (376)
T TIGR02379 47 KKALLTPSCTAALEMAALLLDIQPGDEVIMPSYTFVSTANAFVLRGAKIVFVDIR 101 (376)
T ss_pred CeEEEeCCHHHHHHHHHHHcCCCCcCEEEECCCCcHHHHHHHHHcCCEEEEEecC
Confidence 3466667777766655544322223456777776666677778899999999865
No 315
>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR). Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts
Probab=68.39 E-value=62 Score=26.19 Aligned_cols=55 Identities=29% Similarity=0.344 Sum_probs=39.5
Q ss_pred CCCCCCCeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 028618 64 GLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 121 (206)
Q Consensus 64 g~~~~~~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~ 121 (206)
+.+.+++..+|...+|..|.+++..++..|.++++..+. ..+.+.++.+|++-++
T Consensus 140 ~~~~~g~~vlI~g~~~~~g~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~~~~~ 194 (325)
T cd08253 140 AGAKAGETVLVHGGSGAVGHAAVQLARWAGARVIATASS---AEGAELVRQAGADAVF 194 (325)
T ss_pred hCCCCCCEEEEEcCCchHHHHHHHHHHHcCCEEEEEeCC---HHHHHHHHHcCCCEEE
Confidence 456666677777778999999999999999886665443 3455556667775443
No 316
>PLN02702 L-idonate 5-dehydrogenase
Probab=68.36 E-value=54 Score=27.83 Aligned_cols=57 Identities=23% Similarity=0.307 Sum_probs=41.2
Q ss_pred HcCCCCCCCeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 028618 62 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 121 (206)
Q Consensus 62 ~~g~~~~~~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~ 121 (206)
+...+.+++..+|. ..|..|.++...++.+|.+.++.+.. ...+.+.++.+|++.+.
T Consensus 175 ~~~~~~~g~~vlI~-g~g~vG~~~~~~a~~~G~~~v~~~~~--~~~~~~~~~~~g~~~~~ 231 (364)
T PLN02702 175 RRANIGPETNVLVM-GAGPIGLVTMLAARAFGAPRIVIVDV--DDERLSVAKQLGADEIV 231 (364)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCEEEEECC--CHHHHHHHHHhCCCEEE
Confidence 34445666666666 57889999999999999986555543 46777788889986554
No 317
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=68.34 E-value=49 Score=26.38 Aligned_cols=54 Identities=15% Similarity=0.155 Sum_probs=35.6
Q ss_pred CeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCC
Q 028618 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPA 125 (206)
Q Consensus 70 ~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~ 125 (206)
+..+|+.++|--|.++|......|.+++++..... ...+.....+.++..+..|
T Consensus 7 ~~vlItGas~~iG~~ia~~l~~~G~~v~~~~r~~~--~~~~~~~~~~~~~~~~~~D 60 (257)
T PRK07067 7 KVALLTGAASGIGEAVAERYLAEGARVVIADIKPA--RARLAALEIGPAAIAVSLD 60 (257)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEEcCCHH--HHHHHHHHhCCceEEEEcc
Confidence 36789999999999999999999998777754322 1122223345455555433
No 318
>PRK05826 pyruvate kinase; Provisional
Probab=68.30 E-value=90 Score=28.21 Aligned_cols=118 Identities=11% Similarity=0.036 Sum_probs=67.9
Q ss_pred HHHHHHHHCCCcEEEE-----------eCCCCCHHHHHHHHHcCCEEEEeCCCC----ChHHHHHHHHHHHHhCCCeEE-
Q 028618 84 GLAFMAAAKQYRLIIT-----------MPASMSLERRIILRAFGAELVLTDPAK----GMKGAVQKAEEILAKTPNAYM- 147 (206)
Q Consensus 84 alA~~a~~~g~~~~iv-----------vp~~~~~~~~~~~~~~Ga~v~~~~~~~----~~~~~~~~a~~~~~~~~~~~~- 147 (206)
-+...|+..|.++++- .|..+....+...-..|++-+...+.. .-.++++...+.+++-...++
T Consensus 263 ~Ii~~c~~~gKpvi~ATqmLeSM~~~p~PTRAEvsDVanav~dG~D~vmLS~ETA~G~yPveaV~~m~~I~~~aE~~~~~ 342 (465)
T PRK05826 263 KIIRKAREAGKPVITATQMLESMIENPRPTRAEVSDVANAVLDGTDAVMLSGETAAGKYPVEAVEAMARICKGAEKEFSI 342 (465)
T ss_pred HHHHHHHHcCCCEEEECHHHHHHhhCCCCchhhhhhHHHHHHcCCcEEEeccccccCcCHHHHHHHHHHHHHHHHhccch
Confidence 3455688899988773 455556666777788899988876542 123555544444432211111
Q ss_pred ---cCCCCCC-ccHHHHHHhHHHHHHhhhCCCCCEEEEccCcchHHHHHHHHHHhcCCCCeEC
Q 028618 148 ---LQQFENP-ANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKVR 206 (206)
Q Consensus 148 ---~~~~~~~-~~~~~g~~t~~~Ei~~q~~~~~d~vv~~vG~Gg~~aGi~~~~k~~~p~~~vi 206 (206)
....... ..........+.++.++++ +.+.||+.+-+|.++--+++ ..|.+.||
T Consensus 343 ~~~~~~~~~~~~~~~~~ia~aa~~~a~~l~-~a~~Ivv~T~sG~ta~~isk----~RP~~pI~ 400 (465)
T PRK05826 343 NLSKHRLDRQFDRIDEAIAMSAMYAANHLK-GVKAIVALTESGRTARLISR----FRPGAPIF 400 (465)
T ss_pred hhhhhhccccccchHHHHHHHHHHHHHhcC-CCCEEEEECCCcHHHHHHHh----hCCCCCEE
Confidence 1110000 1112344445566767763 26799999999998666554 34776664
No 319
>PRK06348 aspartate aminotransferase; Provisional
Probab=68.27 E-value=77 Score=27.22 Aligned_cols=84 Identities=14% Similarity=0.219 Sum_probs=44.2
Q ss_pred eEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCC--CChHHHHHHHHHHHHhCCCeEEc
Q 028618 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPA--KGMKGAVQKAEEILAKTPNAYML 148 (206)
Q Consensus 71 ~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~--~~~~~~~~~a~~~~~~~~~~~~~ 148 (206)
..|+..+++.+|..++..+-. +=.-.|++|.-.-..-...++..|++++.++.. .++.-..+..++..++....+++
T Consensus 90 ~~i~it~G~~~al~~~~~~~~-~~gd~vlv~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~l 168 (384)
T PRK06348 90 NEIMATVGACHGMYLALQSIL-DPGDEVIIHEPYFTPYKDQIEMVGGKPIILETYEEDGFQINVKKLEALITSKTKAIIL 168 (384)
T ss_pred hhEEEcCChHHHHHHHHHHhc-CCCCEEEEeCCCCcchHHHHHHcCCEEEEecCCcCcCCcCCHHHHHHhhCcCccEEEE
Confidence 356777777787766655532 212245555544344466677889999988632 11111122222333334456776
Q ss_pred CCCCCCc
Q 028618 149 QQFENPA 155 (206)
Q Consensus 149 ~~~~~~~ 155 (206)
+...||.
T Consensus 169 ~~p~NPt 175 (384)
T PRK06348 169 NSPNNPT 175 (384)
T ss_pred eCCCCCC
Confidence 5434443
No 320
>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]
Probab=68.23 E-value=36 Score=28.53 Aligned_cols=55 Identities=27% Similarity=0.350 Sum_probs=45.3
Q ss_pred HHcCCCCCCCeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCE
Q 028618 61 EAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAE 118 (206)
Q Consensus 61 ~~~g~~~~~~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~ 118 (206)
.+...++||...+|-+..|--|..+.-.|+..|-.++.... +.+|.+..+..|++
T Consensus 139 ~e~y~vkpGhtVlvhaAAGGVGlll~Ql~ra~~a~tI~~as---TaeK~~~akenG~~ 193 (336)
T KOG1197|consen 139 FEAYNVKPGHTVLVHAAAGGVGLLLCQLLRAVGAHTIATAS---TAEKHEIAKENGAE 193 (336)
T ss_pred HHhcCCCCCCEEEEEeccccHHHHHHHHHHhcCcEEEEEec---cHHHHHHHHhcCCc
Confidence 45667889988899999999999999999999976666544 45788888999997
No 321
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=68.18 E-value=65 Score=26.94 Aligned_cols=52 Identities=25% Similarity=0.372 Sum_probs=37.4
Q ss_pred cCCCCCCCeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCE
Q 028618 63 KGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAE 118 (206)
Q Consensus 63 ~g~~~~~~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~ 118 (206)
...+.++++.+|.+ .|..|.++...|+.+|++++++.+. ..+.+.++.+|++
T Consensus 160 ~~~~~~~~~vlV~g-~g~vg~~~~~~a~~~G~~vi~~~~~---~~~~~~~~~~g~~ 211 (345)
T cd08260 160 QARVKPGEWVAVHG-CGGVGLSAVMIASALGARVIAVDID---DDKLELARELGAV 211 (345)
T ss_pred ccCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCeEEEEeCC---HHHHHHHHHhCCC
Confidence 34456666677777 7899999999999999987666433 4455666677873
No 322
>PLN02253 xanthoxin dehydrogenase
Probab=68.10 E-value=35 Score=27.71 Aligned_cols=33 Identities=9% Similarity=0.073 Sum_probs=27.7
Q ss_pred CeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCC
Q 028618 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPA 102 (206)
Q Consensus 70 ~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~ 102 (206)
+..+|+..+|.-|.++|......|.+++++-..
T Consensus 19 k~~lItGas~gIG~~la~~l~~~G~~v~~~~~~ 51 (280)
T PLN02253 19 KVALVTGGATGIGESIVRLFHKHGAKVCIVDLQ 51 (280)
T ss_pred CEEEEECCCchHHHHHHHHHHHcCCEEEEEeCC
Confidence 368899999999999999999999988776543
No 323
>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.
Probab=67.99 E-value=48 Score=27.50 Aligned_cols=50 Identities=24% Similarity=0.234 Sum_probs=36.0
Q ss_pred CCeEEEeeCCCchHHHHHHHHHHC-CCcEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 028618 69 GESVLIEPTSGNTGIGLAFMAAAK-QYRLIITMPASMSLERRIILRAFGAELVL 121 (206)
Q Consensus 69 ~~~~vv~aSsGN~g~alA~~a~~~-g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~ 121 (206)
++..+|...+|..|.+++..|+.+ |++++++.+. +.+.+.++.+|++-++
T Consensus 149 g~~vlV~ga~g~vg~~~~~~ak~~~G~~vi~~~~~---~~~~~~l~~~g~~~~~ 199 (336)
T TIGR02817 149 KRALLIIGGAGGVGSILIQLARQLTGLTVIATASR---PESQEWVLELGAHHVI 199 (336)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHhCCCEEEEEcCc---HHHHHHHHHcCCCEEE
Confidence 556667777899999999999987 9887666443 3456666777875443
No 324
>KOG1176 consensus Acyl-CoA synthetase [Lipid transport and metabolism]
Probab=67.96 E-value=89 Score=28.77 Aligned_cols=61 Identities=20% Similarity=0.105 Sum_probs=50.8
Q ss_pred CCCCCeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCC
Q 028618 66 ITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAK 126 (206)
Q Consensus 66 ~~~~~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~ 126 (206)
+++|+...+.+.-.-+-..++++|-..|....-+=|..+..+...+++.-.+++++++.+.
T Consensus 69 i~~gDvV~i~~pNs~~~~~~~la~~~~Ga~~~~~Np~~~~~ei~~~~~~s~~kiif~d~~~ 129 (537)
T KOG1176|consen 69 IKKGDVVGILAPNTPEFVELALAVPMAGAVLNPLNPRLTASEIAKQLKDSKPKLIFVDEDF 129 (537)
T ss_pred CCCCCEEEEEcCCCHHHHHHHHHHHHcCccccccCcccCHHHHHHHHHhcCCeEEEEcCch
Confidence 4556556666666667788899999999988888888889999999999999999999874
No 325
>PRK08251 short chain dehydrogenase; Provisional
Probab=67.89 E-value=46 Score=26.24 Aligned_cols=55 Identities=27% Similarity=0.274 Sum_probs=35.3
Q ss_pred eEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHH-HHHHHHc--CCEEEEeCCC
Q 028618 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLER-RIILRAF--GAELVLTDPA 125 (206)
Q Consensus 71 ~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~-~~~~~~~--Ga~v~~~~~~ 125 (206)
..+|+..+|..|.++|......|.++++.......... ...+... +.++..+..|
T Consensus 4 ~vlItGas~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D 61 (248)
T PRK08251 4 KILITGASSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLARYPGIKVAVAALD 61 (248)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcC
Confidence 57888999999999999998889877666543211111 1222222 6677666544
No 326
>PRK07775 short chain dehydrogenase; Provisional
Probab=67.80 E-value=51 Score=26.73 Aligned_cols=55 Identities=22% Similarity=0.134 Sum_probs=37.6
Q ss_pred eEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCC-HHHHHHHHHcCCEEEEeCCC
Q 028618 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLTDPA 125 (206)
Q Consensus 71 ~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~-~~~~~~~~~~Ga~v~~~~~~ 125 (206)
..+|+..+|..|.+++......|.+++++...... ......++..|.++..+..|
T Consensus 12 ~vlVtGa~g~iG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D 67 (274)
T PRK07775 12 PALVAGASSGIGAATAIELAAAGFPVALGARRVEKCEELVDKIRADGGEAVAFPLD 67 (274)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEECC
Confidence 57888888999999999998899987766543211 11223355667777766544
No 327
>PRK07576 short chain dehydrogenase; Provisional
Probab=67.77 E-value=48 Score=26.76 Aligned_cols=56 Identities=13% Similarity=0.091 Sum_probs=37.3
Q ss_pred CeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCC-HHHHHHHHHcCCEEEEeCCC
Q 028618 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLTDPA 125 (206)
Q Consensus 70 ~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~-~~~~~~~~~~Ga~v~~~~~~ 125 (206)
+..+|+..+|.-|.+++......|.+++++...... ....+.+...+.+++.+..|
T Consensus 10 k~ilItGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D 66 (264)
T PRK07576 10 KNVVVVGGTSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQAGPEGLGVSAD 66 (264)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCceEEEECC
Confidence 367888899999999999998999987777543221 11223445556666555443
No 328
>PRK00779 ornithine carbamoyltransferase; Provisional
Probab=67.74 E-value=35 Score=28.88 Aligned_cols=61 Identities=21% Similarity=0.226 Sum_probs=40.0
Q ss_pred HcCCCCCCCeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCC--CHHHHHH-HHHcCCEEEEeC
Q 028618 62 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASM--SLERRII-LRAFGAELVLTD 123 (206)
Q Consensus 62 ~~g~~~~~~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~--~~~~~~~-~~~~Ga~v~~~~ 123 (206)
+.|.+. |.+..+++-.+|.+++++..++.+|++++++.|+.- +...++. .+..|.++...+
T Consensus 146 ~~g~l~-gl~i~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~g~~~~~~~ 209 (304)
T PRK00779 146 HRGSLK-GLKVAWVGDGNNVANSLLLAAALLGFDLRVATPKGYEPDPEIVEKIAKETGASIEVTH 209 (304)
T ss_pred HhCCcC-CcEEEEEeCCCccHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHcCCeEEEEc
Confidence 345443 223344444589999999999999999999999873 2333332 455677666543
No 329
>TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family. This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc.
Probab=67.66 E-value=51 Score=27.15 Aligned_cols=53 Identities=23% Similarity=0.380 Sum_probs=37.3
Q ss_pred CCCCC-eEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 028618 66 ITPGE-SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 121 (206)
Q Consensus 66 ~~~~~-~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~ 121 (206)
+.+++ ..+|...+|..|.+++..|+.+|.+.++.... +.+.+.++.+|++-+.
T Consensus 142 ~~~~~~~vlI~g~~g~vg~~~~~la~~~G~~vi~~~~~---~~~~~~~~~~g~~~~~ 195 (323)
T TIGR02823 142 LTPEDGPVLVTGATGGVGSLAVAILSKLGYEVVASTGK---AEEEDYLKELGASEVI 195 (323)
T ss_pred CCCCCceEEEEcCCcHHHHHHHHHHHHcCCeEEEEeCC---HHHHHHHHhcCCcEEE
Confidence 55665 66676677999999999999999986655433 2444666777764433
No 330
>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH). Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo
Probab=67.65 E-value=46 Score=28.52 Aligned_cols=55 Identities=20% Similarity=0.252 Sum_probs=39.3
Q ss_pred HcCCCCCCCeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEE
Q 028618 62 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAEL 119 (206)
Q Consensus 62 ~~g~~~~~~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v 119 (206)
+...+.+++..+| ...|..|.+++..|+.+|.+.++++ +....+.+.++.+|+..
T Consensus 170 ~~~~~~~g~~vlI-~g~g~vg~~~~~~a~~~G~~~vi~~--~~~~~~~~~~~~~g~~~ 224 (375)
T cd08282 170 ELAGVQPGDTVAV-FGAGPVGLMAAYSAILRGASRVYVV--DHVPERLDLAESIGAIP 224 (375)
T ss_pred HhcCCCCCCEEEE-ECCCHHHHHHHHHHHHcCCCEEEEE--CCCHHHHHHHHHcCCeE
Confidence 3444566666666 5668999999999999998544443 33567788888899854
No 331
>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=67.51 E-value=59 Score=25.62 Aligned_cols=54 Identities=17% Similarity=0.238 Sum_probs=35.2
Q ss_pred CeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 028618 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 124 (206)
Q Consensus 70 ~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~ 124 (206)
+..+|+..+|.-|.++|......|.++++....... ........++.++..+..
T Consensus 6 k~ilItGas~gIG~~la~~l~~~G~~vv~~~~~~~~-~~~~~~~~~~~~~~~~~~ 59 (253)
T PRK08642 6 QTVLVTGGSRGLGAAIARAFAREGARVVVNYHQSED-AAEALADELGDRAIALQA 59 (253)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHCCCeEEEEcCCCHH-HHHHHHHHhCCceEEEEc
Confidence 367899999999999999998999988775543321 112222344555554443
No 332
>PRK09242 tropinone reductase; Provisional
Probab=67.50 E-value=50 Score=26.33 Aligned_cols=56 Identities=18% Similarity=0.104 Sum_probs=37.3
Q ss_pred CeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCH-HHHHHHHHc--CCEEEEeCCC
Q 028618 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSL-ERRIILRAF--GAELVLTDPA 125 (206)
Q Consensus 70 ~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~-~~~~~~~~~--Ga~v~~~~~~ 125 (206)
+..+|+..+|..|.++|......|.+++++....... .....++.. +.++..+..|
T Consensus 10 k~~lItGa~~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~D 68 (257)
T PRK09242 10 QTALITGASKGIGLAIAREFLGLGADVLIVARDADALAQARDELAEEFPEREVHGLAAD 68 (257)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECC
Confidence 3678888899999999999999999877776542211 112233333 6677766554
No 333
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=67.47 E-value=52 Score=25.77 Aligned_cols=55 Identities=15% Similarity=0.213 Sum_probs=36.5
Q ss_pred eEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCH--HHHHHHHHcCCEEEEeCCC
Q 028618 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSL--ERRIILRAFGAELVLTDPA 125 (206)
Q Consensus 71 ~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~--~~~~~~~~~Ga~v~~~~~~ 125 (206)
..+|+..+|..|.++|......|.+++++...+... .....+...+.++..+..|
T Consensus 7 ~ilI~Gasg~iG~~la~~l~~~g~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D 63 (247)
T PRK05565 7 VAIVTGASGGIGRAIAELLAKEGAKVVIAYDINEEAAQELLEEIKEEGGDAIAVKAD 63 (247)
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCeEEEEECC
Confidence 678888899999999998888899877763332211 1223344456666666544
No 334
>TIGR01831 fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductase, putative. This model represents a small, very well conserved family of proteins closely related to the FabG family, TIGR01830, and possibly equal in function. In all completed genomes with a member of this family, a FabG in TIGR01830 is also found.
Probab=67.30 E-value=54 Score=25.69 Aligned_cols=53 Identities=19% Similarity=0.160 Sum_probs=36.8
Q ss_pred EEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCC--HHHHHHHHHcCCEEEEeCCC
Q 028618 73 LIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS--LERRIILRAFGAELVLTDPA 125 (206)
Q Consensus 73 vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~--~~~~~~~~~~Ga~v~~~~~~ 125 (206)
+|+..+|.-|.++|......|.+++++.....+ ....+.++..+.++..+..|
T Consensus 2 lItGas~giG~~~a~~l~~~G~~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D 56 (239)
T TIGR01831 2 LVTGASRGIGRAIANRLAADGFEICVHYHSGRSDAESVVSAIQAQGGNARLLQFD 56 (239)
T ss_pred EEeCCCchHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHHcCCeEEEEEcc
Confidence 678888999999999999999997766543321 22234455667777766554
No 335
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=67.29 E-value=56 Score=26.19 Aligned_cols=56 Identities=11% Similarity=0.128 Sum_probs=36.4
Q ss_pred CeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCH--HHHHHHH-HcCCEEEEeCCC
Q 028618 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSL--ERRIILR-AFGAELVLTDPA 125 (206)
Q Consensus 70 ~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~--~~~~~~~-~~Ga~v~~~~~~ 125 (206)
+..+|+..++.-|.++|......|.+++++...+... ...+.++ ..|.++..+..|
T Consensus 9 k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 67 (260)
T PRK08416 9 KTLVISGGTRGIGKAIVYEFAQSGVNIAFTYNSNVEEANKIAEDLEQKYGIKAKAYPLN 67 (260)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHHhcCCceEEEEcC
Confidence 4678888999999999999999999877664433211 1122232 356666655544
No 336
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=67.28 E-value=55 Score=26.16 Aligned_cols=114 Identities=14% Similarity=0.177 Sum_probs=64.7
Q ss_pred eEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcC---------------CEEEEeCCCCChHHHHHHH
Q 028618 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFG---------------AELVLTDPAKGMKGAVQKA 135 (206)
Q Consensus 71 ~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~G---------------a~v~~~~~~~~~~~~~~~a 135 (206)
+.++...+|.-|.-=|......|-+++++.|+- .++-..+.+..+ +.+++...++ .+-.++.
T Consensus 13 k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~-~~el~~~~~~~~i~~~~~~~~~~~~~~~~lviaAt~d--~~ln~~i 89 (210)
T COG1648 13 KKVLVVGGGSVALRKARLLLKAGADVTVVSPEF-EPELKALIEEGKIKWIEREFDAEDLDDAFLVIAATDD--EELNERI 89 (210)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCc-cHHHHHHHHhcCcchhhcccChhhhcCceEEEEeCCC--HHHHHHH
Confidence 356777888887777777788888888888887 333333333332 4444444432 1333444
Q ss_pred HHHHHhCCCeEEcCCCCCCccHHHHHHhHHHHHHhhhCCCCCEEEEccCcchHHHHHHHHHHh
Q 028618 136 EEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKE 198 (206)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~q~~~~~d~vv~~vG~Gg~~aGi~~~~k~ 198 (206)
.+.|++. + .++|-.|+|.. +--.+ +-+ + +..-+.++++|||..--+++.+++
T Consensus 90 ~~~a~~~-~-i~vNv~D~p~~---~~f~~-Pa~---~--~r~~l~iaIsT~G~sP~la~~ir~ 141 (210)
T COG1648 90 AKAARER-R-ILVNVVDDPEL---CDFIF-PAI---V--DRGPLQIAISTGGKSPVLARLLRE 141 (210)
T ss_pred HHHHHHh-C-CceeccCCccc---Cceec-cee---e--ccCCeEEEEECCCCChHHHHHHHH
Confidence 4555554 2 34455555442 00111 111 1 123388899999987778887775
No 337
>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=67.26 E-value=51 Score=29.37 Aligned_cols=79 Identities=15% Similarity=0.155 Sum_probs=47.2
Q ss_pred EEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHH----HHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEE
Q 028618 72 VLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRI----ILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYM 147 (206)
Q Consensus 72 ~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~----~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 147 (206)
..+..+||-.+..++..+- ++=.-.|++|...-..... .++.+|+++.+++...+. +.++.+ .+++....|
T Consensus 78 ~av~~~SG~aAi~~al~al-l~~GD~VI~~~~~Y~~T~~~~~~~l~~~Gi~v~~vd~~~d~-~~l~~~---I~~~Tk~I~ 152 (432)
T PRK06702 78 GAVATASGQAAIMLAVLNI-CSSGDHLLCSSTVYGGTFNLFGVSLRKLGIDVTFFNPNLTA-DEIVAL---ANDKTKLVY 152 (432)
T ss_pred cEEEECCHHHHHHHHHHHh-cCCCCEEEECCCchHHHHHHHHHHHHHCCCEEEEECCCCCH-HHHHHh---CCcCCeEEE
Confidence 3566888888888887654 3323456666654322222 368899999999864212 223222 233346777
Q ss_pred cCCCCCCc
Q 028618 148 LQQFENPA 155 (206)
Q Consensus 148 ~~~~~~~~ 155 (206)
+....||.
T Consensus 153 ~e~pgnP~ 160 (432)
T PRK06702 153 AESLGNPA 160 (432)
T ss_pred EEcCCCcc
Confidence 76667776
No 338
>PRK13243 glyoxylate reductase; Reviewed
Probab=67.21 E-value=74 Score=27.20 Aligned_cols=95 Identities=18% Similarity=0.170 Sum_probs=58.6
Q ss_pred eEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEcCC
Q 028618 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQ 150 (206)
Q Consensus 71 ~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 150 (206)
+++..-..|+-|.++|..++.+|++++++-|... .. ....+|... . + ++ ++.++- +...+.-
T Consensus 151 ktvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~~-~~---~~~~~~~~~--~--~--l~-------ell~~a-DiV~l~l 212 (333)
T PRK13243 151 KTIGIIGFGRIGQAVARRAKGFGMRILYYSRTRK-PE---AEKELGAEY--R--P--LE-------ELLRES-DFVSLHV 212 (333)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCC-hh---hHHHcCCEe--c--C--HH-------HHHhhC-CEEEEeC
Confidence 4677778899999999999999999887755422 21 123445421 1 1 22 233333 4554433
Q ss_pred CCCCccHHHHHHhHHHHHHhhhCCCCCEEEEccCcchHH
Q 028618 151 FENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTI 189 (206)
Q Consensus 151 ~~~~~~~~~g~~t~~~Ei~~q~~~~~d~vv~~vG~Gg~~ 189 (206)
..++. -...+..|.++++ +++.+++-+|.|+.+
T Consensus 213 P~t~~----T~~~i~~~~~~~m--k~ga~lIN~aRg~~v 245 (333)
T PRK13243 213 PLTKE----TYHMINEERLKLM--KPTAILVNTARGKVV 245 (333)
T ss_pred CCChH----HhhccCHHHHhcC--CCCeEEEECcCchhc
Confidence 23222 2233456777776 478999999999876
No 339
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=66.99 E-value=77 Score=27.00 Aligned_cols=54 Identities=19% Similarity=0.273 Sum_probs=37.9
Q ss_pred HcCCCCCCCeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCE
Q 028618 62 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAE 118 (206)
Q Consensus 62 ~~g~~~~~~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~ 118 (206)
+...+.+++..+|. ..|..|.+++..|+.+|.+.++.+.. ++.+.+.++.+|++
T Consensus 177 ~~~~~~~g~~vlI~-g~g~vG~~a~~~a~~~G~~~v~~~~~--~~~~~~~~~~~g~~ 230 (365)
T cd05279 177 NTAKVTPGSTCAVF-GLGGVGLSVIMGCKAAGASRIIAVDI--NKDKFEKAKQLGAT 230 (365)
T ss_pred hccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEeC--CHHHHHHHHHhCCC
Confidence 44556777666665 57999999999999999875554332 44566666777774
No 340
>PRK08192 aspartate carbamoyltransferase; Provisional
Probab=66.98 E-value=37 Score=29.27 Aligned_cols=45 Identities=18% Similarity=0.197 Sum_probs=33.3
Q ss_pred CchHHHHHHH-HHHCCCcEEEEeCCCC--CHHHHHHHHHcCCEEEEeC
Q 028618 79 GNTGIGLAFM-AAAKQYRLIITMPASM--SLERRIILRAFGAELVLTD 123 (206)
Q Consensus 79 GN~g~alA~~-a~~~g~~~~ivvp~~~--~~~~~~~~~~~Ga~v~~~~ 123 (206)
+|.+.+++.. ++.+|++++++.|+.. +....+.++..|.++..+.
T Consensus 171 ~rv~~Sl~~~l~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~ 218 (338)
T PRK08192 171 GRTVHSLSRLLCMYKNVSFTLVSPKELAMPDYVISDIENAGHKITITD 218 (338)
T ss_pred CchHHHHHHHHHHhcCCEEEEECCccccCCHHHHHHHHHcCCeEEEEc
Confidence 6889999976 5577999999999963 5555566666676666554
No 341
>PLN02342 ornithine carbamoyltransferase
Probab=66.71 E-value=33 Score=29.68 Aligned_cols=60 Identities=18% Similarity=0.242 Sum_probs=39.9
Q ss_pred HcCCCCCCCeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCC--CHHHHHHHHHcCC-EEEEe
Q 028618 62 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASM--SLERRIILRAFGA-ELVLT 122 (206)
Q Consensus 62 ~~g~~~~~~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~--~~~~~~~~~~~Ga-~v~~~ 122 (206)
+.|.+. |.+..+.+-..|.+++++.+++++|++++++.|+.- ++..++.++.+|. ++...
T Consensus 188 ~~G~l~-glkva~vGD~~nva~Sli~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~ 250 (348)
T PLN02342 188 HIGRLE-GTKVVYVGDGNNIVHSWLLLAAVLPFHFVCACPKGYEPDAKTVEKARAAGISKIEIT 250 (348)
T ss_pred HhCCcC-CCEEEEECCCchhHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHhCCCcEEEE
Confidence 345443 223344444468999999999999999999999973 4444555566664 55544
No 342
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=66.69 E-value=59 Score=25.31 Aligned_cols=55 Identities=13% Similarity=0.137 Sum_probs=38.4
Q ss_pred eEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCH--HHHHHHHHcCCEEEEeCCC
Q 028618 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSL--ERRIILRAFGAELVLTDPA 125 (206)
Q Consensus 71 ~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~--~~~~~~~~~Ga~v~~~~~~ 125 (206)
+.+|+..+|..|.+++-.....|.+++++....... ...+.++..+.++..+..+
T Consensus 8 ~vlItGasg~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 64 (249)
T PRK12825 8 VALVTGAARGLGRAIALRLARAGADVVVHYRSDEEAAEELVEAVEALGRRAQAVQAD 64 (249)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHHHhcCCceEEEECC
Confidence 678999999999999999999999887766554322 1233344566666666544
No 343
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=66.64 E-value=73 Score=26.31 Aligned_cols=82 Identities=13% Similarity=0.077 Sum_probs=45.2
Q ss_pred EEEEeCCCCCCC-ChhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCC-----CHHH
Q 028618 35 IAAKLEMMEPCS-SVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASM-----SLER 108 (206)
Q Consensus 35 i~~K~E~~~ptG-S~K~R~a~~~~~~a~~~g~~~~~~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~-----~~~~ 108 (206)
|.+..|...-.| .+=.|.. .+...+.++|. +..+++-..++... -.-+..|+++..+ |+.. ...-
T Consensus 2 i~ir~Da~~~iG~GHv~Rcl-~LA~~l~~~g~----~v~f~~~~~~~~~~---~~i~~~g~~v~~~-~~~~~~~~d~~~~ 72 (279)
T TIGR03590 2 ILFRADASSEIGLGHVMRCL-TLARALHAQGA----EVAFACKPLPGDLI---DLLLSAGFPVYEL-PDESSRYDDALEL 72 (279)
T ss_pred EEEEecCCccccccHHHHHH-HHHHHHHHCCC----EEEEEeCCCCHHHH---HHHHHcCCeEEEe-cCCCchhhhHHHH
Confidence 556666654445 4444443 33344445664 23445444444322 2447888886664 4432 1234
Q ss_pred HHHHHHcCCEEEEeCCC
Q 028618 109 RIILRAFGAELVLTDPA 125 (206)
Q Consensus 109 ~~~~~~~Ga~v~~~~~~ 125 (206)
.+.++..+.+++.++.-
T Consensus 73 ~~~l~~~~~d~vV~D~y 89 (279)
T TIGR03590 73 INLLEEEKFDILIVDHY 89 (279)
T ss_pred HHHHHhcCCCEEEEcCC
Confidence 56677788999999873
No 344
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=66.62 E-value=56 Score=26.18 Aligned_cols=51 Identities=20% Similarity=0.259 Sum_probs=34.3
Q ss_pred CeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHH-HHcCCEEEEeC
Q 028618 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIIL-RAFGAELVLTD 123 (206)
Q Consensus 70 ~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~-~~~Ga~v~~~~ 123 (206)
+..+|+..+|--|.++|......|.+++++-.. ..+.+.+ +.++.++..+.
T Consensus 7 k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~---~~~~~~~~~~~~~~~~~~~ 58 (263)
T PRK06200 7 QVALITGGGSGIGRALVERFLAEGARVAVLERS---AEKLASLRQRFGDHVLVVE 58 (263)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC---HHHHHHHHHHhCCcceEEE
Confidence 467888899999999999999999987766433 2233333 34455444443
No 345
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=66.50 E-value=25 Score=32.16 Aligned_cols=51 Identities=16% Similarity=0.098 Sum_probs=40.7
Q ss_pred eEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 028618 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 124 (206)
Q Consensus 71 ~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~ 124 (206)
..++.-..|..|++.+..++.+|..++++ +....+++..+.+|++.+.++.
T Consensus 165 akVlViGaG~iGl~Aa~~ak~lGA~V~v~---d~~~~rle~a~~lGa~~v~v~~ 215 (511)
T TIGR00561 165 AKVLVIGAGVAGLAAIGAANSLGAIVRAF---DTRPEVKEQVQSMGAEFLELDF 215 (511)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEE---eCCHHHHHHHHHcCCeEEeccc
Confidence 45677788999999999999999875555 3345578888899999987764
No 346
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=66.17 E-value=30 Score=30.39 Aligned_cols=78 Identities=10% Similarity=0.099 Sum_probs=42.6
Q ss_pred EEEeeCCCchHHHHHHHHHHCCCcEEEEeCCC---CCHH-HHHHHHHc-CCEEEEe---CCCCChHHHHHHHHHHHHhCC
Q 028618 72 VLIEPTSGNTGIGLAFMAAAKQYRLIITMPAS---MSLE-RRIILRAF-GAELVLT---DPAKGMKGAVQKAEEILAKTP 143 (206)
Q Consensus 72 ~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~---~~~~-~~~~~~~~-Ga~v~~~---~~~~~~~~~~~~a~~~~~~~~ 143 (206)
.++..+.|-+|.-.+-.++++|.+++++-.+. .++. ..+.++.. ..+++.+ +.+.+...-.+...+.+++++
T Consensus 82 kVLv~~nG~FG~R~~~ia~~~g~~v~~~~~~wg~~v~p~~v~~~L~~~~~~~~V~~vH~ETSTGvlnpl~~I~~~~k~~g 161 (383)
T COG0075 82 KVLVVVNGKFGERFAEIAERYGAEVVVLEVEWGEAVDPEEVEEALDKDPDIKAVAVVHNETSTGVLNPLKEIAKAAKEHG 161 (383)
T ss_pred eEEEEeCChHHHHHHHHHHHhCCceEEEeCCCCCCCCHHHHHHHHhcCCCccEEEEEeccCcccccCcHHHHHHHHHHcC
Confidence 56777888888888888888888888887652 2233 33333322 3333332 222222223444455566664
Q ss_pred CeEEcC
Q 028618 144 NAYMLQ 149 (206)
Q Consensus 144 ~~~~~~ 149 (206)
..+.++
T Consensus 162 ~l~iVD 167 (383)
T COG0075 162 ALLIVD 167 (383)
T ss_pred CEEEEE
Confidence 444443
No 347
>PRK14031 glutamate dehydrogenase; Provisional
Probab=66.16 E-value=29 Score=31.11 Aligned_cols=53 Identities=9% Similarity=-0.094 Sum_probs=41.8
Q ss_pred hhHHHHHHHHHHHHcCCCCCCCeEEEeeCCCchHHHHHHHHHHCCCcEEEEeC
Q 028618 49 KDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMP 101 (206)
Q Consensus 49 K~R~a~~~~~~a~~~g~~~~~~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp 101 (206)
--||..+.+..+.+..-.....++++....||-|..+|.....+|.+++++.+
T Consensus 207 Tg~Gv~~~~~~~~~~~g~~l~g~rVaVQGfGNVG~~aA~~L~e~GAkVVaVSD 259 (444)
T PRK14031 207 TGYGNIYFLMEMLKTKGTDLKGKVCLVSGSGNVAQYTAEKVLELGGKVVTMSD 259 (444)
T ss_pred cHHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEC
Confidence 45688888877653332344457889999999999999999999999999887
No 348
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=66.13 E-value=63 Score=25.43 Aligned_cols=54 Identities=31% Similarity=0.517 Sum_probs=38.3
Q ss_pred CCCCCCCeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 028618 64 GLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 121 (206)
Q Consensus 64 g~~~~~~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~ 121 (206)
..+.++++.+|...++ .|++++..++..|.+++++.+. +.+.+.++.+|++.+.
T Consensus 130 ~~~~~~~~vli~g~~~-~G~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~~~~~ 183 (271)
T cd05188 130 GVLKPGDTVLVLGAGG-VGLLAAQLAKAAGARVIVTDRS---DEKLELAKELGADHVI 183 (271)
T ss_pred cCCCCCCEEEEECCCH-HHHHHHHHHHHcCCeEEEEcCC---HHHHHHHHHhCCceec
Confidence 3335566677777666 9999999999999877666443 3556667778876544
No 349
>TIGR02095 glgA glycogen/starch synthases, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate.
Probab=66.05 E-value=43 Score=29.72 Aligned_cols=30 Identities=17% Similarity=-0.024 Sum_probs=24.3
Q ss_pred eCCCchHHHHHHHHHHCCCcEEEEeCCCCC
Q 028618 76 PTSGNTGIGLAFMAAAKQYRLIITMPASMS 105 (206)
Q Consensus 76 aSsGN~g~alA~~a~~~g~~~~ivvp~~~~ 105 (206)
..-|.+..+|+.+-++.|.++.|++|....
T Consensus 17 GGl~~~v~~L~~aL~~~G~~v~v~~p~y~~ 46 (473)
T TIGR02095 17 GGLADVVGALPKALAALGHDVRVLLPAYGC 46 (473)
T ss_pred CcHHHHHHHHHHHHHHcCCeEEEEecCCcC
Confidence 444678888888889999999999998543
No 350
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=66.00 E-value=61 Score=27.18 Aligned_cols=58 Identities=21% Similarity=0.256 Sum_probs=38.8
Q ss_pred HHcCCCCCCCeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 028618 61 EAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 121 (206)
Q Consensus 61 ~~~g~~~~~~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~ 121 (206)
.+...+.++++.+|.+ +|..|.+++..|+.+|.+.++++.. ++.+...++.+|++-+.
T Consensus 155 ~~~~~~~~g~~vlI~g-~g~vG~~a~~lak~~G~~~v~~~~~--~~~~~~~~~~~g~~~vi 212 (343)
T cd05285 155 CRRAGVRPGDTVLVFG-AGPIGLLTAAVAKAFGATKVVVTDI--DPSRLEFAKELGATHTV 212 (343)
T ss_pred HHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCcEEEEECC--CHHHHHHHHHcCCcEEe
Confidence 3566677887777754 5778999999999999984333322 24455666667775443
No 351
>PRK11891 aspartate carbamoyltransferase; Provisional
Probab=65.95 E-value=36 Score=30.37 Aligned_cols=45 Identities=18% Similarity=0.145 Sum_probs=33.8
Q ss_pred CchHHHHHHHHHHC-CCcEEEEeCCCC--CHHHHHHHHHcCCEEEEeC
Q 028618 79 GNTGIGLAFMAAAK-QYRLIITMPASM--SLERRIILRAFGAELVLTD 123 (206)
Q Consensus 79 GN~g~alA~~a~~~-g~~~~ivvp~~~--~~~~~~~~~~~Ga~v~~~~ 123 (206)
+|.+.+++.+++.+ |++++++.|+.- +....+.++..|..+..++
T Consensus 253 ~rv~~Sl~~~la~~~G~~v~l~~P~~~~~~~~~~~~~~~~G~~v~~~~ 300 (429)
T PRK11891 253 GRTVHSLVKLLALYRGLKFTLVSPPTLEMPAYIVEQISRNGHVIEQTD 300 (429)
T ss_pred ChHHHHHHHHHHHhcCCEEEEECCCccccCHHHHHHHHhcCCeEEEEc
Confidence 69999999997665 999999999874 4444555666677766554
No 352
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=65.89 E-value=56 Score=27.24 Aligned_cols=55 Identities=24% Similarity=0.217 Sum_probs=36.5
Q ss_pred cCCCCCCCeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEE
Q 028618 63 KGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 120 (206)
Q Consensus 63 ~g~~~~~~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~ 120 (206)
.+.+.+++..+|. .+|-.|.++...|+.+|...++.+ ..+..+.+.++.+|++-+
T Consensus 162 ~~~~~~~~~VlI~-g~g~vg~~~iqlak~~g~~~v~~~--~~~~~~~~~~~~~g~~~v 216 (347)
T cd05278 162 LAGIKPGSTVAVI-GAGPVGLCAVAGARLLGAARIIAV--DSNPERLDLAKEAGATDI 216 (347)
T ss_pred hcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCEEEEE--eCCHHHHHHHHHhCCcEE
Confidence 4456677666665 457889999999999997444444 334566666677776443
No 353
>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically
Probab=65.87 E-value=50 Score=28.34 Aligned_cols=54 Identities=17% Similarity=0.213 Sum_probs=38.4
Q ss_pred HcCCCCCCCeEEEeeCCCchHHHHHHHHHHCCCc-EEEEeCCCCCHHHHHHHHHcCCEE
Q 028618 62 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYR-LIITMPASMSLERRIILRAFGAEL 119 (206)
Q Consensus 62 ~~g~~~~~~~~vv~aSsGN~g~alA~~a~~~g~~-~~ivvp~~~~~~~~~~~~~~Ga~v 119 (206)
+.+.+++++..+|. ..|..|.+++..|+.+|.+ ++++.+ ...+++.++.+|++-
T Consensus 184 ~~~~~~~g~~VlV~-G~g~vG~~~~~~a~~~G~~~Vi~~~~---~~~~~~~a~~lGa~~ 238 (373)
T cd08299 184 NTAKVTPGSTCAVF-GLGGVGLSAIMGCKAAGASRIIAVDI---NKDKFAKAKELGATE 238 (373)
T ss_pred hccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEEEcC---CHHHHHHHHHcCCce
Confidence 44556777666666 5799999999999999994 544422 446677778888743
No 354
>PRK06924 short chain dehydrogenase; Provisional
Probab=65.78 E-value=56 Score=25.82 Aligned_cols=53 Identities=19% Similarity=0.149 Sum_probs=34.9
Q ss_pred eEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 028618 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 124 (206)
Q Consensus 71 ~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~ 124 (206)
..+|+..+|.-|.++|......|.+++++..... +......+..+.++..+..
T Consensus 3 ~vlItGasggiG~~ia~~l~~~g~~V~~~~r~~~-~~~~~~~~~~~~~~~~~~~ 55 (251)
T PRK06924 3 YVIITGTSQGLGEAIANQLLEKGTHVISISRTEN-KELTKLAEQYNSNLTFHSL 55 (251)
T ss_pred EEEEecCCchHHHHHHHHHHhcCCEEEEEeCCch-HHHHHHHhccCCceEEEEe
Confidence 5688889999999999999889998777654321 2222223334555554443
No 355
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=65.77 E-value=77 Score=27.61 Aligned_cols=59 Identities=22% Similarity=0.255 Sum_probs=39.0
Q ss_pred cCCCCCCCeEEEeeCCCchHHHHHHHHHHCCC--cEEEEeCCCCCHHHHHHHHHc--------CCEEEEeC
Q 028618 63 KGLITPGESVLIEPTSGNTGIGLAFMAAAKQY--RLIITMPASMSLERRIILRAF--------GAELVLTD 123 (206)
Q Consensus 63 ~g~~~~~~~~vv~aSsGN~g~alA~~a~~~g~--~~~ivvp~~~~~~~~~~~~~~--------Ga~v~~~~ 123 (206)
...+++|++.+|...+|-.|..++..|+.+|. ..++++ +.++.|++..+.+ |++...+.
T Consensus 170 ~~~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~--~~~~~r~~~a~~~~~~~~~~~Ga~~~~i~ 238 (410)
T cd08238 170 RMGIKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVT--DVNDERLARAQRLFPPEAASRGIELLYVN 238 (410)
T ss_pred hcCCCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEE--cCCHHHHHHHHHhccccccccCceEEEEC
Confidence 34567776667766789999999999999875 222322 3455677777776 77644443
No 356
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=65.73 E-value=67 Score=25.57 Aligned_cols=55 Identities=16% Similarity=0.160 Sum_probs=35.5
Q ss_pred eEEEeeCC--CchHHHHHHHHHHCCCcEEEEeCCCC---------CHH---HHHHHHHcCCEEEEeCCC
Q 028618 71 SVLIEPTS--GNTGIGLAFMAAAKQYRLIITMPASM---------SLE---RRIILRAFGAELVLTDPA 125 (206)
Q Consensus 71 ~~vv~aSs--GN~g~alA~~a~~~g~~~~ivvp~~~---------~~~---~~~~~~~~Ga~v~~~~~~ 125 (206)
..+|+..+ |.-|.++|......|.+++++.+... ... ....++..|.+++.+..|
T Consensus 7 ~vlItGas~~~giG~~la~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 75 (256)
T PRK12748 7 IALVTGASRLNGIGAAVCRRLAAKGIDIFFTYWSPYDKTMPWGMHDKEPVLLKEEIESYGVRCEHMEID 75 (256)
T ss_pred EEEEeCCCCCCCHHHHHHHHHHHcCCcEEEEcCCccccccccccchhhHHHHHHHHHhcCCeEEEEECC
Confidence 56777766 47899999888889998777754310 111 223445667777777655
No 357
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=65.66 E-value=76 Score=26.18 Aligned_cols=58 Identities=28% Similarity=0.375 Sum_probs=39.6
Q ss_pred HcCCCCCCCeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeC
Q 028618 62 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTD 123 (206)
Q Consensus 62 ~~g~~~~~~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~ 123 (206)
+.+.+.++.+.++. .+|..|.+++..|+.+|+++++..+ ++.+.+.++.+|++-+...
T Consensus 159 ~~~~~~~~~~vli~-g~g~vG~~~~~la~~~G~~V~~~~~---s~~~~~~~~~~g~~~~~~~ 216 (338)
T cd08254 159 RAGEVKPGETVLVI-GLGGLGLNAVQIAKAMGAAVIAVDI---KEEKLELAKELGADEVLNS 216 (338)
T ss_pred hccCCCCCCEEEEE-CCcHHHHHHHHHHHHcCCEEEEEcC---CHHHHHHHHHhCCCEEEcC
Confidence 34446666666665 4678899999999999998554433 4556667777887554443
No 358
>COG1587 HemD Uroporphyrinogen-III synthase [Coenzyme metabolism]
Probab=65.58 E-value=63 Score=26.18 Aligned_cols=110 Identities=15% Similarity=0.082 Sum_probs=62.3
Q ss_pred HHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHc---CCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEcCCCCCCccHH
Q 028618 82 GIGLAFMAAAKQYRLIITMPASMSLERRIILRAF---GAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPK 158 (206)
Q Consensus 82 g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~---Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 158 (206)
|.+.|-+.+.+|+++..+-++.........+..+ |.+|....+... +......+..+.-....+.-|.+-....
T Consensus 86 G~~Ta~~l~~~G~~~~~~p~~~~~~~l~~~l~~~~~~~~~vl~~~~~~~---r~~l~~~L~~~G~~v~~~~~Y~~~~~~~ 162 (248)
T COG1587 86 GEKTAEALRKLGIKVDFIPEDGDSEGLLEELPELLKGGKRVLILRGNGG---REVLEEKLEERGAEVREVEVYRTEPPPL 162 (248)
T ss_pred cHHHHHHHHHhCCCCCcCCCccchHHHHHHhhhhccCCCeEEEEcCCCc---hHHHHHHHHhCCCEEEEEeeeeecCCCc
Confidence 5678889999999988777767777778888777 567777766532 2222333333321233455555433311
Q ss_pred HHHHhHHHHHHhhhCCCCCEEEEccCcchHHHHHHHHHHhcC
Q 028618 159 IHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKN 200 (206)
Q Consensus 159 ~g~~t~~~Ei~~q~~~~~d~vv~~vG~Gg~~aGi~~~~k~~~ 200 (206)
. ..++ .+.++ ...+|+|++..+. ++-.+...+...+
T Consensus 163 ~-~~~~-~~~~~--~~~~d~v~ftS~~--~v~~~~~~~~~~~ 198 (248)
T COG1587 163 D-EATL-IELLK--LGEVDAVVFTSSS--AVRALLALAPESG 198 (248)
T ss_pred c-HHHH-HHHHH--hCCCCEEEEeCHH--HHHHHHHHccccc
Confidence 1 1111 11111 2468988887643 5556666555544
No 359
>PRK07060 short chain dehydrogenase; Provisional
Probab=65.58 E-value=64 Score=25.28 Aligned_cols=53 Identities=21% Similarity=0.192 Sum_probs=37.6
Q ss_pred CeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHH-HHHHHcCCEEEEeCCC
Q 028618 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERR-IILRAFGAELVLTDPA 125 (206)
Q Consensus 70 ~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~-~~~~~~Ga~v~~~~~~ 125 (206)
++.+|+..+|..|..++......|.+++++... ..+. +.....+.+++.++-.
T Consensus 10 ~~~lItGa~g~iG~~~a~~l~~~g~~V~~~~r~---~~~~~~~~~~~~~~~~~~D~~ 63 (245)
T PRK07060 10 KSVLVTGASSGIGRACAVALAQRGARVVAAARN---AAALDRLAGETGCEPLRLDVG 63 (245)
T ss_pred CEEEEeCCcchHHHHHHHHHHHCCCEEEEEeCC---HHHHHHHHHHhCCeEEEecCC
Confidence 367888888999999999999999987766543 2223 2334457777766654
No 360
>PRK05872 short chain dehydrogenase; Provisional
Probab=65.51 E-value=57 Score=26.91 Aligned_cols=32 Identities=19% Similarity=0.180 Sum_probs=26.9
Q ss_pred CeEEEeeCCCchHHHHHHHHHHCCCcEEEEeC
Q 028618 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMP 101 (206)
Q Consensus 70 ~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp 101 (206)
+..+|+..+|.-|.++|......|.+++++-.
T Consensus 10 k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r 41 (296)
T PRK05872 10 KVVVVTGAARGIGAELARRLHARGAKLALVDL 41 (296)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeC
Confidence 46789999999999999999999998766644
No 361
>PRK12747 short chain dehydrogenase; Provisional
Probab=65.50 E-value=41 Score=26.70 Aligned_cols=55 Identities=15% Similarity=0.073 Sum_probs=36.5
Q ss_pred CeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCC--CHHHHHHHHHcCCEEEEeCC
Q 028618 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASM--SLERRIILRAFGAELVLTDP 124 (206)
Q Consensus 70 ~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~--~~~~~~~~~~~Ga~v~~~~~ 124 (206)
+..+|+..+|--|.++|......|.++++...... .......++..|.++..+..
T Consensus 5 k~~lItGas~gIG~~ia~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 61 (252)
T PRK12747 5 KVALVTGASRGIGRAIAKRLANDGALVAIHYGNRKEEAEETVYEIQSNGGSAFSIGA 61 (252)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHHHhcCCceEEEec
Confidence 46789999999999999999999988777532221 11223344555666555543
No 362
>PRK07102 short chain dehydrogenase; Provisional
Probab=65.24 E-value=66 Score=25.33 Aligned_cols=55 Identities=18% Similarity=0.049 Sum_probs=36.1
Q ss_pred eEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCH-HHHHHHH-HcCCEEEEeCCC
Q 028618 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSL-ERRIILR-AFGAELVLTDPA 125 (206)
Q Consensus 71 ~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~-~~~~~~~-~~Ga~v~~~~~~ 125 (206)
+.+|+..+|.-|.+++......|.+++++....... ...+.++ ..+.++..+..|
T Consensus 3 ~vlItGas~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D 59 (243)
T PRK07102 3 KILIIGATSDIARACARRYAAAGARLYLAARDVERLERLADDLRARGAVAVSTHELD 59 (243)
T ss_pred EEEEEcCCcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEecC
Confidence 578888999999999999999999877776543211 1122222 235566665544
No 363
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=65.22 E-value=69 Score=26.66 Aligned_cols=69 Identities=13% Similarity=0.040 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHcCCCCCCCeEEEeeC-CCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcC-CEEEEeCC
Q 028618 51 RIGYSMISDAEAKGLITPGESVLIEPT-SGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFG-AELVLTDP 124 (206)
Q Consensus 51 R~a~~~~~~a~~~g~~~~~~~~vv~aS-sGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~G-a~v~~~~~ 124 (206)
+|....+.++.+.|. ..++..- -=.+...+-.+|+++|+..+.+++.+++..+++.+.... .-++.+..
T Consensus 109 ~Gie~F~~~~~~~Gv-----dGlivpDLP~ee~~~~~~~~~~~gi~~I~lvaPtt~~~rl~~i~~~a~GFiY~vs~ 179 (265)
T COG0159 109 YGIEKFLRRAKEAGV-----DGLLVPDLPPEESDELLKAAEKHGIDPIFLVAPTTPDERLKKIAEAASGFIYYVSR 179 (265)
T ss_pred hhHHHHHHHHHHcCC-----CEEEeCCCChHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCCcEEEEec
Confidence 556667777777776 3444442 234556778888888888888888888888888776666 66666654
No 364
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=65.17 E-value=74 Score=25.89 Aligned_cols=32 Identities=25% Similarity=0.197 Sum_probs=25.1
Q ss_pred CeEEEeeCCC--chHHHHHHHHHHCCCcEEEEeC
Q 028618 70 ESVLIEPTSG--NTGIGLAFMAAAKQYRLIITMP 101 (206)
Q Consensus 70 ~~~vv~aSsG--N~g~alA~~a~~~g~~~~ivvp 101 (206)
+..+|+..++ .-|.++|......|.+++++-.
T Consensus 8 k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r 41 (271)
T PRK06505 8 KRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQ 41 (271)
T ss_pred CEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecC
Confidence 3677777775 6889999999999998877643
No 365
>COG1922 WecG Teichoic acid biosynthesis proteins [Cell envelope biogenesis, outer membrane]
Probab=65.14 E-value=56 Score=26.98 Aligned_cols=100 Identities=19% Similarity=0.161 Sum_probs=54.4
Q ss_pred hHHHHHHHH-HHCCCcEEEEeCCC-CCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEcCCCCCCccHH
Q 028618 81 TGIGLAFMA-AAKQYRLIITMPAS-MSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPK 158 (206)
Q Consensus 81 ~g~alA~~a-~~~g~~~~ivvp~~-~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 158 (206)
-|.++-+++ +.+|-+..--+|.. .-..-.+.+..-|-.|.++++.. .-..+.+..+.++.|+.-++.-.+....+.
T Consensus 71 DG~gvV~~ar~~~g~~~~~rv~G~Dl~~~Ll~~a~~~~~~vfllGgkp--~V~~~a~~~l~~~~p~l~ivg~h~GYf~~~ 148 (253)
T COG1922 71 DGIGVVRAARRLLGQPLPERVAGTDLVEALLKRAAEEGKRVFLLGGKP--GVAEQAAAKLRAKYPGLKIVGSHDGYFDPE 148 (253)
T ss_pred CchhHHHHHHHHhCccCcccCChHHHHHHHHHHhCccCceEEEecCCH--HHHHHHHHHHHHHCCCceEEEecCCCCChh
Confidence 357888888 66777765444432 11222333334456788888873 244555666777777555543222111111
Q ss_pred HHHHhHHHHHHhhhC-CCCCEEEEccCcch
Q 028618 159 IHYETTGPELWKGSG-GRIDALVSGIGTGG 187 (206)
Q Consensus 159 ~g~~t~~~Ei~~q~~-~~~d~vv~~vG~Gg 187 (206)
+- . .|.+.+. ..||.++|+.|.-.
T Consensus 149 e~-~----~i~~~I~~s~pdil~VgmG~P~ 173 (253)
T COG1922 149 EE-E----AIVERIAASGPDILLVGMGVPR 173 (253)
T ss_pred hH-H----HHHHHHHhcCCCEEEEeCCCch
Confidence 11 2 2444432 35899999988643
No 366
>cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1. Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=65.09 E-value=46 Score=27.80 Aligned_cols=48 Identities=25% Similarity=0.267 Sum_probs=34.9
Q ss_pred CCeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEE
Q 028618 69 GESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 120 (206)
Q Consensus 69 ~~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~ 120 (206)
+++.+|...+|..|.+++..|+.+|+++++.... .+.+.++.+|++-+
T Consensus 163 g~~vlI~g~~g~ig~~~~~~a~~~G~~v~~~~~~----~~~~~~~~~g~~~~ 210 (350)
T cd08248 163 GKRVLILGGSGGVGTFAIQLLKAWGAHVTTTCST----DAIPLVKSLGADDV 210 (350)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCc----chHHHHHHhCCceE
Confidence 6566677768999999999999999986665432 25556667776433
No 367
>PRK09730 putative NAD(P)-binding oxidoreductase; Provisional
Probab=65.09 E-value=65 Score=25.22 Aligned_cols=55 Identities=15% Similarity=0.227 Sum_probs=37.4
Q ss_pred eEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCC--HHHHHHHHHcCCEEEEeCCC
Q 028618 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS--LERRIILRAFGAELVLTDPA 125 (206)
Q Consensus 71 ~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~--~~~~~~~~~~Ga~v~~~~~~ 125 (206)
..+|+..+|.-|.+++......|.+++++...+.. ......++..|.++..+..+
T Consensus 3 ~~lItGa~g~iG~~l~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 59 (247)
T PRK09730 3 IALVTGGSRGIGRATALLLAQEGYTVAVNYQQNLHAAQEVVNLITQAGGKAFVLQAD 59 (247)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhCCCeEEEEEcc
Confidence 46888899999999999999999987765543321 12233455567666655544
No 368
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=64.89 E-value=81 Score=26.24 Aligned_cols=53 Identities=30% Similarity=0.470 Sum_probs=37.8
Q ss_pred HcCCCCCCCeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCE
Q 028618 62 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAE 118 (206)
Q Consensus 62 ~~g~~~~~~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~ 118 (206)
+...+.+++..+|. .+|..|.+++..|+.+|+++++... ++.+.+.++.+|++
T Consensus 153 ~~~~l~~g~~vLI~-g~g~vG~~a~~lA~~~g~~v~~~~~---s~~~~~~~~~~g~~ 205 (337)
T cd08261 153 RRAGVTAGDTVLVV-GAGPIGLGVIQVAKARGARVIVVDI---DDERLEFARELGAD 205 (337)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCeEEEECC---CHHHHHHHHHhCCC
Confidence 44556777666666 4678899999999999999766633 35566666777764
No 369
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=64.79 E-value=68 Score=25.34 Aligned_cols=34 Identities=15% Similarity=0.143 Sum_probs=28.0
Q ss_pred CCeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCC
Q 028618 69 GESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPA 102 (206)
Q Consensus 69 ~~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~ 102 (206)
++..+|+..+|..|.+++......|.+++++...
T Consensus 12 ~k~vlItG~~g~iG~~la~~l~~~G~~Vi~~~r~ 45 (247)
T PRK08945 12 DRIILVTGAGDGIGREAALTYARHGATVILLGRT 45 (247)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCCcEEEEeCC
Confidence 3478899999999999999998899988776544
No 370
>cd06268 PBP1_ABC_transporter_LIVBP_like Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. Periplasmic binding domain of ATP-binding cassette transporter-like systems that belong to the type I periplasmic binding fold protein superfamily. They are mostly present in archaea and eubacteria, and are primarily involved in scavenging solutes from the environment. ABC-type transporters couple ATP hydrolysis with the uptake and efflux of a wide range of substrates across bacterial membranes, including amino acids, peptides, lipids and sterols, and various drugs. These systems are comprised of transmembrane domains, nucleotide binding domains, and in most bacterial uptake systems, periplasmic binding proteins (PBPs) which transfer the ligand to the extracellular gate of the transmembrane domains. These PBPs bind their substrates selectively and with high affinity. Members of this group include ABC
Probab=64.68 E-value=69 Score=25.37 Aligned_cols=142 Identities=18% Similarity=0.146 Sum_probs=71.1
Q ss_pred HHHHHHHHHHcCCCCCCCeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCC---------------C-----HHHHHHH
Q 028618 53 GYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASM---------------S-----LERRIIL 112 (206)
Q Consensus 53 a~~~~~~a~~~g~~~~~~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~---------------~-----~~~~~~~ 112 (206)
+...+..+.+++. ..++...+.....+++-.++..|++++.+..... + ..-.+.+
T Consensus 55 ~~~~~~~l~~~~v-----~~iig~~~~~~~~~~~~~~~~~~ip~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (298)
T cd06268 55 AAAAARELVDDGV-----DAVIGPLSSGVALAAAPVAEEAGVPLISPGATSPALTGKGNPYVFRTAPSDAQQAAALADYL 129 (298)
T ss_pred HHHHHHHHHhCCc-----eEEEcCCcchhHHhhHHHHHhCCCcEEccCCCCcccccCCCceEEEcccCcHHHHHHHHHHH
Confidence 3444555666654 4566555555556778888899998876542211 0 1112334
Q ss_pred HHcC--CEEEEeCCCCChH-HHHHHHHHHHHhCCCeEEcCCCCCCccHHHHHHhHHHHHHhhhCCCCCEEEEccCcchHH
Q 028618 113 RAFG--AELVLTDPAKGMK-GAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTI 189 (206)
Q Consensus 113 ~~~G--a~v~~~~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~q~~~~~d~vv~~vG~Gg~~ 189 (206)
...+ .+|..+..+..+. +..+...+..++.+...-.....+... ..+.....++.+ ..+|.|++. +.+...
T Consensus 130 ~~~~~~~~i~~v~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~--~~~~~~~~~l~~---~~~~~vi~~-~~~~~~ 203 (298)
T cd06268 130 AEKGKVKKVAIIYDDYAYGRGLAAAFREALKKLGGEVVAEETYPPGA--TDFSPLIAKLKA---AGPDAVFLA-GYGGDA 203 (298)
T ss_pred HHhcCCCEEEEEEcCCchhHHHHHHHHHHHHHcCCEEEEEeccCCCC--ccHHHHHHHHHh---cCCCEEEEc-cccchH
Confidence 4444 5666665443222 233333344444422221111111110 112222333322 347887776 444677
Q ss_pred HHHHHHHHhcCCCCeE
Q 028618 190 TGAGKFLKEKNPNIKV 205 (206)
Q Consensus 190 aGi~~~~k~~~p~~~v 205 (206)
.++...+++.+.+.++
T Consensus 204 ~~~~~~~~~~g~~~~~ 219 (298)
T cd06268 204 ALFLKQAREAGLKVPI 219 (298)
T ss_pred HHHHHHHHHcCCCCcE
Confidence 8888888887655554
No 371
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=64.60 E-value=69 Score=26.03 Aligned_cols=49 Identities=29% Similarity=0.271 Sum_probs=37.2
Q ss_pred CCCeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEE
Q 028618 68 PGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAEL 119 (206)
Q Consensus 68 ~~~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v 119 (206)
+++..++.+.+|..|.+++..|+.+|.+++...+ .+.+.+.++.+|+..
T Consensus 132 ~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~---~~~~~~~~~~~g~~~ 180 (305)
T cd08270 132 LGRRVLVTGASGGVGRFAVQLAALAGAHVVAVVG---SPARAEGLRELGAAE 180 (305)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCcE
Confidence 3557777777799999999999999998655533 346777777788743
No 372
>smart00822 PKS_KR This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group.
Probab=64.56 E-value=52 Score=23.84 Aligned_cols=55 Identities=25% Similarity=0.262 Sum_probs=35.6
Q ss_pred eEEEeeCCCchHHHHHHHHHHCCCc-EEEEeCCCCCHH----HHHHHHHcCCEEEEeCCC
Q 028618 71 SVLIEPTSGNTGIGLAFMAAAKQYR-LIITMPASMSLE----RRIILRAFGAELVLTDPA 125 (206)
Q Consensus 71 ~~vv~aSsGN~g~alA~~a~~~g~~-~~ivvp~~~~~~----~~~~~~~~Ga~v~~~~~~ 125 (206)
..+|+..+|..|.+++......|.. ++++.....+.. .++.++..|.++..+..+
T Consensus 2 ~~li~Ga~~~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~D 61 (180)
T smart00822 2 TYLITGGLGGLGLELARWLAERGARHLVLLSRSGPDAPGAAELLAELEALGAEVTVVACD 61 (180)
T ss_pred EEEEEcCCChHHHHHHHHHHHhhCCeEEEEeCCCCCCccHHHHHHHHHhcCCeEEEEECC
Confidence 4578888889999999888888875 444433322211 135556678887766554
No 373
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=64.54 E-value=52 Score=27.38 Aligned_cols=52 Identities=25% Similarity=0.271 Sum_probs=36.2
Q ss_pred CCCCCeEEEeeCCCchHHHHHHHHHHCC-CcEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 028618 66 ITPGESVLIEPTSGNTGIGLAFMAAAKQ-YRLIITMPASMSLERRIILRAFGAELVL 121 (206)
Q Consensus 66 ~~~~~~~vv~aSsGN~g~alA~~a~~~g-~~~~ivvp~~~~~~~~~~~~~~Ga~v~~ 121 (206)
+.+++..+|.. +|..|.+++..|+.+| .+++++.+ ++.+.+.++.+|++-+.
T Consensus 165 ~~~~~~vlI~g-~~~vg~~~~~~a~~~g~~~v~~~~~---~~~~~~~~~~~g~~~~~ 217 (340)
T cd05284 165 LDPGSTVVVIG-VGGLGHIAVQILRALTPATVIAVDR---SEEALKLAERLGADHVL 217 (340)
T ss_pred CCCCCEEEEEc-CcHHHHHHHHHHHHhCCCcEEEEeC---CHHHHHHHHHhCCcEEE
Confidence 45565667766 5569999999999999 77665533 34566677788874443
No 374
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=64.52 E-value=54 Score=27.46 Aligned_cols=52 Identities=17% Similarity=0.132 Sum_probs=36.3
Q ss_pred CCCCCeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 028618 66 ITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 121 (206)
Q Consensus 66 ~~~~~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~ 121 (206)
+.++...+|.+ .|..|.+++..|+.+|++++++.+. ..+.+.++.+|++-++
T Consensus 167 ~~~g~~vlV~g-~g~vG~~~~~~a~~~G~~v~~~~~~---~~~~~~~~~~g~~~vi 218 (337)
T cd05283 167 VGPGKRVGVVG-IGGLGHLAVKFAKALGAEVTAFSRS---PSKKEDALKLGADEFI 218 (337)
T ss_pred CCCCCEEEEEC-CcHHHHHHHHHHHHcCCeEEEEcCC---HHHHHHHHHcCCcEEe
Confidence 56666666754 6899999999999999976555433 3455556677775443
No 375
>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated
Probab=64.51 E-value=54 Score=25.90 Aligned_cols=34 Identities=15% Similarity=0.116 Sum_probs=28.7
Q ss_pred CeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCC
Q 028618 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPAS 103 (206)
Q Consensus 70 ~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~ 103 (206)
+..+|+..+|..|.++|......|.+++++....
T Consensus 9 k~vlItGas~~iG~~la~~l~~~G~~v~~~~~~~ 42 (252)
T PRK08220 9 KTVWVTGAAQGIGYAVALAFVEAGAKVIGFDQAF 42 (252)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEecch
Confidence 4678888999999999999999999988886543
No 376
>cd08290 ETR 2-enoyl thioester reductase (ETR). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f
Probab=64.45 E-value=51 Score=27.46 Aligned_cols=59 Identities=24% Similarity=0.255 Sum_probs=40.5
Q ss_pred CCCCCCCeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCC-CHHHHHHHHHcCCEEEEe
Q 028618 64 GLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASM-SLERRIILRAFGAELVLT 122 (206)
Q Consensus 64 g~~~~~~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~-~~~~~~~~~~~Ga~v~~~ 122 (206)
+.+.+++..+|...+|..|.+++..|+.+|.++++...... ...+.+.++.+|++-++.
T Consensus 142 ~~~~~g~~vlI~g~~g~vg~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~~~~~g~~~~~~ 201 (341)
T cd08290 142 VKLQPGDWVIQNGANSAVGQAVIQLAKLLGIKTINVVRDRPDLEELKERLKALGADHVLT 201 (341)
T ss_pred cccCCCCEEEEccchhHHHHHHHHHHHHcCCeEEEEEcCCCcchhHHHHHHhcCCCEEEe
Confidence 34566656666666799999999999999999877765321 124556666778755443
No 377
>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=64.44 E-value=61 Score=27.03 Aligned_cols=56 Identities=30% Similarity=0.461 Sum_probs=40.8
Q ss_pred HcCCCCCCCeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEE
Q 028618 62 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 120 (206)
Q Consensus 62 ~~g~~~~~~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~ 120 (206)
+...+.+++..+|.+ +|-.|.+++..|+.+|.+.++... .++.+.+.++.+|++-+
T Consensus 155 ~~~~~~~g~~VlI~g-~g~vg~~~~~la~~~G~~~v~~~~--~~~~~~~~~~~~g~~~~ 210 (341)
T cd08262 155 RRARLTPGEVALVIG-CGPIGLAVIAALKARGVGPIVASD--FSPERRALALAMGADIV 210 (341)
T ss_pred HhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCcEEEEEC--CCHHHHHHHHHcCCcEE
Confidence 455567776667765 588999999999999988655543 35677777788888543
No 378
>PRK08339 short chain dehydrogenase; Provisional
Probab=64.40 E-value=55 Score=26.46 Aligned_cols=33 Identities=18% Similarity=0.218 Sum_probs=27.7
Q ss_pred CeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCC
Q 028618 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPA 102 (206)
Q Consensus 70 ~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~ 102 (206)
+..+|+..+|.-|.++|......|.+++++...
T Consensus 9 k~~lItGas~gIG~aia~~l~~~G~~V~~~~r~ 41 (263)
T PRK08339 9 KLAFTTASSKGIGFGVARVLARAGADVILLSRN 41 (263)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCC
Confidence 467899999999999999999999987776543
No 379
>TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families.
Probab=64.24 E-value=45 Score=26.09 Aligned_cols=55 Identities=15% Similarity=0.149 Sum_probs=36.4
Q ss_pred eEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCH--HHHHHHHHcCCEEEEeCCC
Q 028618 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSL--ERRIILRAFGAELVLTDPA 125 (206)
Q Consensus 71 ~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~--~~~~~~~~~Ga~v~~~~~~ 125 (206)
..+|+..+|.-|..+|......|.+++++...+... .....+...+.++..+..|
T Consensus 2 ~~lItG~sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D 58 (242)
T TIGR01829 2 IALVTGGMGGIGTAICQRLAKDGYRVAANCGPNEERAEAWLQEQGALGFDFRVVEGD 58 (242)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHHHhhCCceEEEEec
Confidence 468888999999999999999999887766532211 1122334456666555544
No 380
>PRK07063 short chain dehydrogenase; Provisional
Probab=64.21 E-value=65 Score=25.69 Aligned_cols=56 Identities=11% Similarity=0.080 Sum_probs=35.9
Q ss_pred CeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCC-HHHHHHHHH--cCCEEEEeCCC
Q 028618 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRA--FGAELVLTDPA 125 (206)
Q Consensus 70 ~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~-~~~~~~~~~--~Ga~v~~~~~~ 125 (206)
+..+|+..+|--|.++|......|.+++++...... ....+.++. .+.++..+..|
T Consensus 8 k~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D 66 (260)
T PRK07063 8 KVALVTGAAQGIGAAIARAFAREGAAVALADLDAALAERAAAAIARDVAGARVLAVPAD 66 (260)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEcc
Confidence 367888888999999999999999987776543211 111223333 45566555443
No 381
>PRK07856 short chain dehydrogenase; Provisional
Probab=64.01 E-value=48 Score=26.35 Aligned_cols=33 Identities=18% Similarity=0.191 Sum_probs=27.7
Q ss_pred CeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCC
Q 028618 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPA 102 (206)
Q Consensus 70 ~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~ 102 (206)
+..+|+..+|--|.++|......|.+++++...
T Consensus 7 k~~lItGas~gIG~~la~~l~~~g~~v~~~~r~ 39 (252)
T PRK07856 7 RVVLVTGGTRGIGAGIARAFLAAGATVVVCGRR 39 (252)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 467899999999999999999999988777554
No 382
>PRK07023 short chain dehydrogenase; Provisional
Probab=63.99 E-value=48 Score=26.16 Aligned_cols=51 Identities=14% Similarity=0.083 Sum_probs=36.4
Q ss_pred eEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCC
Q 028618 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPA 125 (206)
Q Consensus 71 ~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~ 125 (206)
+.+|+..+|.-|.++|......|.+++++.....+. .....|.++..+..+
T Consensus 3 ~vlItGasggiG~~ia~~l~~~G~~v~~~~r~~~~~----~~~~~~~~~~~~~~D 53 (243)
T PRK07023 3 RAIVTGHSRGLGAALAEQLLQPGIAVLGVARSRHPS----LAAAAGERLAEVELD 53 (243)
T ss_pred eEEEecCCcchHHHHHHHHHhCCCEEEEEecCcchh----hhhccCCeEEEEEec
Confidence 468999999999999999988999988776543221 134456666655544
No 383
>PRK12824 acetoacetyl-CoA reductase; Provisional
Probab=63.98 E-value=66 Score=25.18 Aligned_cols=55 Identities=15% Similarity=0.054 Sum_probs=35.2
Q ss_pred eEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHH--HHHHHHHcCCEEEEeCCC
Q 028618 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLE--RRIILRAFGAELVLTDPA 125 (206)
Q Consensus 71 ~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~--~~~~~~~~Ga~v~~~~~~ 125 (206)
..+|+..+|.-|.++|..-...|.++++......... ........+.++..+..|
T Consensus 4 ~vlItG~s~~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D 60 (245)
T PRK12824 4 IALVTGAKRGIGSAIARELLNDGYRVIATYFSGNDCAKDWFEEYGFTEDQVRLKELD 60 (245)
T ss_pred EEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCcHHHHHHHHHHhhccCCeEEEEEcC
Confidence 5688888999999999988888988777765532111 112222345556555544
No 384
>PRK12743 oxidoreductase; Provisional
Probab=63.87 E-value=67 Score=25.60 Aligned_cols=76 Identities=22% Similarity=0.233 Sum_probs=41.1
Q ss_pred HHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHHHHhHHHHHHhhhCCCCCEEEEccCc
Q 028618 106 LERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGT 185 (206)
Q Consensus 106 ~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~q~~~~~d~vv~~vG~ 185 (206)
..-.+.+...|++|+.+.... .+.......++.+ .++.....+.| ... .........++.+++ +.+|++|...|.
T Consensus 16 ~~~a~~l~~~G~~V~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~D-l~~-~~~~~~~~~~~~~~~-~~id~li~~ag~ 90 (256)
T PRK12743 16 KACALLLAQQGFDIGITWHSD-EEGAKETAEEVRS-HGVRAEIRQLD-LSD-LPEGAQALDKLIQRL-GRIDVLVNNAGA 90 (256)
T ss_pred HHHHHHHHHCCCEEEEEeCCC-hHHHHHHHHHHHh-cCCceEEEEcc-CCC-HHHHHHHHHHHHHHc-CCCCEEEECCCC
Confidence 344566667899998875432 1222222333332 22222222222 122 234455666777777 578999999886
Q ss_pred c
Q 028618 186 G 186 (206)
Q Consensus 186 G 186 (206)
+
T Consensus 91 ~ 91 (256)
T PRK12743 91 M 91 (256)
T ss_pred C
Confidence 4
No 385
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=63.79 E-value=45 Score=33.16 Aligned_cols=31 Identities=13% Similarity=0.022 Sum_probs=27.9
Q ss_pred eEEEeeCCCchHHHHHHHHHHCCCcEEEEeC
Q 028618 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMP 101 (206)
Q Consensus 71 ~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp 101 (206)
..|+.-.+|..|++.|+..++.|++++||=.
T Consensus 431 ~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~ 461 (1006)
T PRK12775 431 GKVAICGSGPAGLAAAADLVKYGVDVTVYEA 461 (1006)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCcEEEEec
Confidence 4688889999999999999999999999943
No 386
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=63.50 E-value=93 Score=26.45 Aligned_cols=137 Identities=13% Similarity=0.158 Sum_probs=69.3
Q ss_pred HHHHHHHHcCCCCCCCeEEEeeC-CCchHHHHHHHHHHCCCcEEEEeCCCC-----------CHHH---H--H-HHHHcC
Q 028618 55 SMISDAEAKGLITPGESVLIEPT-SGNTGIGLAFMAAAKQYRLIITMPASM-----------SLER---R--I-ILRAFG 116 (206)
Q Consensus 55 ~~~~~a~~~g~~~~~~~~vv~aS-sGN~g~alA~~a~~~g~~~~ivvp~~~-----------~~~~---~--~-~~~~~G 116 (206)
..+..+.+++. ..|+... ..+.-...--.++..|+|++.+-.... .... . + ..+.+|
T Consensus 71 ~~i~~li~~~v-----dgIiv~~~d~~al~~~l~~a~~~gIpVV~~d~~~~~~~~~~~V~~~~~~~~G~~~~~~l~~~l~ 145 (336)
T PRK15408 71 QLINNFVNQGY-----NAIIVSAVSPDGLCPALKRAMQRGVKVLTWDSDTKPECRSYYINQGTPEQLGSMLVEMAAKQVG 145 (336)
T ss_pred HHHHHHHHcCC-----CEEEEecCCHHHHHHHHHHHHHCCCeEEEeCCCCCCccceEEEecCCHHHHHHHHHHHHHHhcC
Confidence 56667777776 3455443 233333444556778999888743210 0101 1 1 122333
Q ss_pred ---CEEEEeCCCCCh---HHHHHHHHH-HHHhCCCeEEcCC-CCCCccHHHHHHhHHHHHHhhhCCCCCEEEEccCcchH
Q 028618 117 ---AELVLTDPAKGM---KGAVQKAEE-ILAKTPNAYMLQQ-FENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGT 188 (206)
Q Consensus 117 ---a~v~~~~~~~~~---~~~~~~a~~-~~~~~~~~~~~~~-~~~~~~~~~g~~t~~~Ei~~q~~~~~d~vv~~vG~Gg~ 188 (206)
.+|..+...... ....+-.++ +.+++|+.-.+.. +.+... ..++. ...++++.- +++|.||++ +...
T Consensus 146 ~g~gki~il~g~~~~~~~~~r~~g~~~~l~~~~p~~~vv~~~~~~~d~-~~a~~-~~~~lL~~~-pdi~aI~~~--~~~~ 220 (336)
T PRK15408 146 KDKAKVAFFYSSPTVTDQNQWVKEAKAKIAKEHPGWEIVTTQFGYNDA-TKSLQ-TAEGILKAY-PDLDAIIAP--DANA 220 (336)
T ss_pred CCCCEEEEEECCCCCccHHHHHHHHHHHHHhhCCCCEEEeecCCCCcH-HHHHH-HHHHHHHHC-CCCcEEEEC--CCcc
Confidence 566666432211 122222222 2245556555442 333222 33443 445666653 679999987 3344
Q ss_pred HHHHHHHHHhcCC
Q 028618 189 ITGAGKFLKEKNP 201 (206)
Q Consensus 189 ~aGi~~~~k~~~p 201 (206)
+.|+..++++.+.
T Consensus 221 ~~Ga~~Al~~~g~ 233 (336)
T PRK15408 221 LPAAAQAAENLKR 233 (336)
T ss_pred HHHHHHHHHhCCC
Confidence 5588899988764
No 387
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=63.44 E-value=37 Score=25.99 Aligned_cols=67 Identities=10% Similarity=0.086 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHcCCCCCCCeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCC--CCHHH--HHHHHHcC---CEEEEeCC
Q 028618 52 IGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPAS--MSLER--RIILRAFG---AELVLTDP 124 (206)
Q Consensus 52 ~a~~~~~~a~~~g~~~~~~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~--~~~~~--~~~~~~~G---a~v~~~~~ 124 (206)
.+...+..+.+.|. .++..| |.+-......++.+|+.-.++.... .|..| .+.++.++ .+|..+++
T Consensus 131 ~~~~~l~~L~~~Gi------~~~i~T-GD~~~~a~~~~~~lgi~~~~v~a~~~~kP~~k~~~~~i~~l~~~~~~v~~vGD 203 (215)
T PF00702_consen 131 GAKEALQELKEAGI------KVAILT-GDNESTASAIAKQLGIFDSIVFARVIGKPEPKIFLRIIKELQVKPGEVAMVGD 203 (215)
T ss_dssp THHHHHHHHHHTTE------EEEEEE-SSEHHHHHHHHHHTTSCSEEEEESHETTTHHHHHHHHHHHHTCTGGGEEEEES
T ss_pred hhhhhhhhhhccCc------ceeeee-ccccccccccccccccccccccccccccccchhHHHHHHHHhcCCCEEEEEcc
Confidence 46777788888875 344455 4444566777889999665555555 77788 78888776 37888887
Q ss_pred C
Q 028618 125 A 125 (206)
Q Consensus 125 ~ 125 (206)
.
T Consensus 204 g 204 (215)
T PF00702_consen 204 G 204 (215)
T ss_dssp S
T ss_pred C
Confidence 6
No 388
>PLN02527 aspartate carbamoyltransferase
Probab=63.42 E-value=76 Score=26.90 Aligned_cols=45 Identities=22% Similarity=0.266 Sum_probs=32.7
Q ss_pred CchHHHHHHHHHHC-CCcEEEEeCCC--CCHHHHHHHHHcCCEEEEeC
Q 028618 79 GNTGIGLAFMAAAK-QYRLIITMPAS--MSLERRIILRAFGAELVLTD 123 (206)
Q Consensus 79 GN~g~alA~~a~~~-g~~~~ivvp~~--~~~~~~~~~~~~Ga~v~~~~ 123 (206)
+|.+.+++.++..+ |+.++++.|+. .+....+.++..|.++....
T Consensus 163 ~rv~~Sl~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~ 210 (306)
T PLN02527 163 GRTVRSLAYLLAKYEDVKIYFVAPDVVKMKDDIKDYLTSKGVEWEESS 210 (306)
T ss_pred ChhHHHHHHHHHhcCCCEEEEECCCccCCCHHHHHHHHHcCCEEEEEc
Confidence 36899999998877 99999999987 34444555555666665543
No 389
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=63.37 E-value=21 Score=25.07 Aligned_cols=94 Identities=22% Similarity=0.157 Sum_probs=53.3
Q ss_pred HHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCC--CCChHHHHHHHHHHHHhCCCeEEcCCCCCCccHHHH
Q 028618 83 IGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP--AKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIH 160 (206)
Q Consensus 83 ~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g 160 (206)
..+|.+.++.|+++.++=.......-.+.++....+++.+.. ...+....+.++...+..|+...+-.+..
T Consensus 18 ~~la~~l~~~G~~v~~~d~~~~~~~l~~~~~~~~pd~V~iS~~~~~~~~~~~~l~~~~k~~~p~~~iv~GG~~------- 90 (121)
T PF02310_consen 18 LYLAAYLRKAGHEVDILDANVPPEELVEALRAERPDVVGISVSMTPNLPEAKRLARAIKERNPNIPIVVGGPH------- 90 (121)
T ss_dssp HHHHHHHHHTTBEEEEEESSB-HHHHHHHHHHTTCSEEEEEESSSTHHHHHHHHHHHHHTTCTTSEEEEEESS-------
T ss_pred HHHHHHHHHCCCeEEEECCCCCHHHHHHHHhcCCCcEEEEEccCcCcHHHHHHHHHHHHhcCCCCEEEEECCc-------
Confidence 345555577899988774444345666778889999988865 22244555555554444555444322111
Q ss_pred HHhHHH-HHHhhhCCCCCEEEEccCc
Q 028618 161 YETTGP-ELWKGSGGRIDALVSGIGT 185 (206)
Q Consensus 161 ~~t~~~-Ei~~q~~~~~d~vv~~vG~ 185 (206)
.+..+ ++++.. ..+|+++..=|-
T Consensus 91 -~t~~~~~~l~~~-~~~D~vv~GegE 114 (121)
T PF02310_consen 91 -ATADPEEILREY-PGIDYVVRGEGE 114 (121)
T ss_dssp -SGHHHHHHHHHH-HTSEEEEEETTS
T ss_pred -hhcChHHHhccC-cCcceecCCChH
Confidence 12233 344432 357888876654
No 390
>PRK07069 short chain dehydrogenase; Validated
Probab=63.26 E-value=72 Score=25.08 Aligned_cols=31 Identities=19% Similarity=0.235 Sum_probs=24.4
Q ss_pred EEEeeCCCchHHHHHHHHHHCCCcEEEEeCC
Q 028618 72 VLIEPTSGNTGIGLAFMAAAKQYRLIITMPA 102 (206)
Q Consensus 72 ~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~ 102 (206)
.+|+..+|.-|.++|......|.+++++...
T Consensus 2 ilVtG~~~~iG~~~a~~l~~~G~~v~~~~r~ 32 (251)
T PRK07069 2 AFITGAAGGLGRAIARRMAEQGAKVFLTDIN 32 (251)
T ss_pred EEEECCCChHHHHHHHHHHHCCCEEEEEeCC
Confidence 4778888889999998888888877666543
No 391
>PRK04870 histidinol-phosphate aminotransferase; Provisional
Probab=63.25 E-value=54 Score=27.79 Aligned_cols=82 Identities=15% Similarity=0.110 Sum_probs=43.3
Q ss_pred EEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHH-HhCCCeEEcCC
Q 028618 72 VLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEIL-AKTPNAYMLQQ 150 (206)
Q Consensus 72 ~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~-~~~~~~~~~~~ 150 (206)
.|+..+++..+..++..+- .+-.-.|++|.-.-..-....+.+|++++.++-+..+.-..+..++.. ......+++..
T Consensus 83 ~I~~t~G~~~~i~~~~~~~-~~~gd~vlv~~P~y~~~~~~~~~~g~~~~~i~~~~~~~~d~~~l~~~~~~~~~~~v~l~~ 161 (356)
T PRK04870 83 DVLLGNGSDELIQLLALAC-AKPGATVLAPEPGFVMYRMSAKLAGLEFVGVPLTADFTLDLPAMLAAIAEHRPALVFLAY 161 (356)
T ss_pred cEEEcCCHHHHHHHHHHHh-cCCCCEEEECCCCHHHHHHHHHHcCCEEEEecCCCCCCCCHHHHHHHhhcCCCCEEEEcC
Confidence 4666666666666555432 122234555554444556678899999999976432111122222222 22446677654
Q ss_pred CCCC
Q 028618 151 FENP 154 (206)
Q Consensus 151 ~~~~ 154 (206)
..||
T Consensus 162 p~NP 165 (356)
T PRK04870 162 PNNP 165 (356)
T ss_pred CCCC
Confidence 4554
No 392
>TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase. This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis.
Probab=63.17 E-value=59 Score=25.27 Aligned_cols=53 Identities=25% Similarity=0.223 Sum_probs=36.5
Q ss_pred EEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCC--HHHHHHHHHcCCEEEEeCCC
Q 028618 73 LIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS--LERRIILRAFGAELVLTDPA 125 (206)
Q Consensus 73 vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~--~~~~~~~~~~Ga~v~~~~~~ 125 (206)
+|+.++|-.|..+|......|.+++++.....+ ......++..|+++..+..|
T Consensus 2 lItG~~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D 56 (239)
T TIGR01830 2 LVTGASRGIGRAIALKLAKEGAKVIITYRSSEEGAEEVVEELKAYGVKALGVVCD 56 (239)
T ss_pred EEECCCcHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHHHHHHhcCCceEEEEec
Confidence 677888899999999888889987776544311 22344556678776666544
No 393
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=62.92 E-value=29 Score=30.01 Aligned_cols=52 Identities=19% Similarity=0.215 Sum_probs=35.7
Q ss_pred CCCCeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 028618 67 TPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 121 (206)
Q Consensus 67 ~~~~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~ 121 (206)
++++..+| ..+|..|.+++..|+.+|.+++++.+. ++.+.+.++.+|++.+.
T Consensus 177 ~~g~~VlV-~G~G~vG~~avq~Ak~~Ga~Vi~~~~~--~~~~~~~a~~lGa~~~i 228 (375)
T PLN02178 177 ESGKRLGV-NGLGGLGHIAVKIGKAFGLRVTVISRS--SEKEREAIDRLGADSFL 228 (375)
T ss_pred CCCCEEEE-EcccHHHHHHHHHHHHcCCeEEEEeCC--hHHhHHHHHhCCCcEEE
Confidence 35555555 456899999999999999985555333 23345666788986544
No 394
>PRK06123 short chain dehydrogenase; Provisional
Probab=62.89 E-value=46 Score=26.24 Aligned_cols=55 Identities=18% Similarity=0.238 Sum_probs=35.0
Q ss_pred eEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCC--CHHHHHHHHHcCCEEEEeCCC
Q 028618 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASM--SLERRIILRAFGAELVLTDPA 125 (206)
Q Consensus 71 ~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~--~~~~~~~~~~~Ga~v~~~~~~ 125 (206)
..+|+..+|.-|.++|......|..+++...... .......++..|.+++.+..|
T Consensus 4 ~~lVtG~~~~iG~~~a~~l~~~G~~vv~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D 60 (248)
T PRK06123 4 VMIITGASRGIGAATALLAAERGYAVCLNYLRNRDAAEAVVQAIRRQGGEALAVAAD 60 (248)
T ss_pred EEEEECCCchHHHHHHHHHHHCCCeEEEecCCCHHHHHHHHHHHHhCCCcEEEEEec
Confidence 5788888899999999888888977554432221 112233455667766555443
No 395
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=62.80 E-value=65 Score=25.89 Aligned_cols=30 Identities=13% Similarity=0.222 Sum_probs=22.9
Q ss_pred eEEEeeC--CCchHHHHHHHHHHCCCcEEEEe
Q 028618 71 SVLIEPT--SGNTGIGLAFMAAAKQYRLIITM 100 (206)
Q Consensus 71 ~~vv~aS--sGN~g~alA~~a~~~g~~~~ivv 100 (206)
..+|+.. ++--|.++|......|.++++.-
T Consensus 9 ~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~ 40 (256)
T PRK07889 9 RILVTGVITDSSIAFHVARVAQEQGAEVVLTG 40 (256)
T ss_pred EEEEeCCCCcchHHHHHHHHHHHCCCEEEEec
Confidence 5677776 67788888888888898876654
No 396
>PRK09414 glutamate dehydrogenase; Provisional
Probab=62.40 E-value=36 Score=30.50 Aligned_cols=53 Identities=9% Similarity=-0.122 Sum_probs=41.5
Q ss_pred hhHHHHHHHHHHHHcCCCCCCCeEEEeeCCCchHHHHHHHHHHCCCcEEEEeC
Q 028618 49 KDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMP 101 (206)
Q Consensus 49 K~R~a~~~~~~a~~~g~~~~~~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp 101 (206)
-.||..+.+..+.+.........+|+....||-|..+|.....+|.+++.+..
T Consensus 211 Tg~Gv~~~~~~~~~~~~~~l~g~rVaIqGfGnVG~~~A~~L~~~GakVVavsD 263 (445)
T PRK09414 211 TGYGLVYFAEEMLKARGDSFEGKRVVVSGSGNVAIYAIEKAQQLGAKVVTCSD 263 (445)
T ss_pred ccHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEc
Confidence 45688888877754443344447889999999999999999999999988854
No 397
>PLN02583 cinnamoyl-CoA reductase
Probab=62.40 E-value=59 Score=26.88 Aligned_cols=33 Identities=21% Similarity=0.252 Sum_probs=28.8
Q ss_pred CeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCC
Q 028618 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPA 102 (206)
Q Consensus 70 ~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~ 102 (206)
+..+|+..+|-.|.+++......|.+++++...
T Consensus 7 k~vlVTGatG~IG~~lv~~Ll~~G~~V~~~~R~ 39 (297)
T PLN02583 7 KSVCVMDASGYVGFWLVKRLLSRGYTVHAAVQK 39 (297)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEEEEEEcC
Confidence 467899999999999999999999999888764
No 398
>TIGR00658 orni_carb_tr ornithine carbamoyltransferase. Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily.
Probab=62.37 E-value=55 Score=27.69 Aligned_cols=51 Identities=14% Similarity=0.152 Sum_probs=35.6
Q ss_pred EEeeCCCchHHHHHHHHHHCCCcEEEEeCCCC--CHHHHHHH----HHcCCEEEEeC
Q 028618 73 LIEPTSGNTGIGLAFMAAAKQYRLIITMPASM--SLERRIIL----RAFGAELVLTD 123 (206)
Q Consensus 73 vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~--~~~~~~~~----~~~Ga~v~~~~ 123 (206)
.+.+-.+|..++++.+++++|++++++.|+.. ++...+.+ +..|+++...+
T Consensus 152 ~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 208 (304)
T TIGR00658 152 VYVGDGNNVCNSLMLAGAKLGMDVVVATPEGYEPDADIVKKAQEIAKENGGSVELTH 208 (304)
T ss_pred EEEeCCCchHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEEc
Confidence 33344479999999999999999999999863 33333332 45677766553
No 399
>PRK13376 pyrB bifunctional aspartate carbamoyltransferase catalytic subunit/aspartate carbamoyltransferase regulatory subunit; Provisional
Probab=62.22 E-value=75 Score=29.18 Aligned_cols=46 Identities=11% Similarity=0.030 Sum_probs=36.8
Q ss_pred CchHHHHHHHHHHCC-CcEEEEeCCCC--CHHHHHHHHHcCCEEEEeCC
Q 028618 79 GNTGIGLAFMAAAKQ-YRLIITMPASM--SLERRIILRAFGAELVLTDP 124 (206)
Q Consensus 79 GN~g~alA~~a~~~g-~~~~ivvp~~~--~~~~~~~~~~~Ga~v~~~~~ 124 (206)
+|.+++++.+++.+| ++++++.|+.. ++..++.++..|+.+.....
T Consensus 186 ~rva~Sl~~~l~~~g~~~v~l~~P~~~~~p~~~~~~a~~~G~~v~i~~d 234 (525)
T PRK13376 186 GRTVHSKVNGLKIFKNVKVDLIAPEELAMPEHYVEKMKKNGFEVRIFSS 234 (525)
T ss_pred CcHHHHHHHHHHhcCCcEEEEECCccccCCHHHHHHHHHcCCeEEEEcC
Confidence 799999999999998 99999999874 55555666778887776543
No 400
>PRK14807 histidinol-phosphate aminotransferase; Provisional
Probab=62.13 E-value=54 Score=27.79 Aligned_cols=53 Identities=11% Similarity=0.033 Sum_probs=30.5
Q ss_pred EEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCC
Q 028618 72 VLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPA 125 (206)
Q Consensus 72 ~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~ 125 (206)
.|+..+++..+..++..+- .+-.-.|+++.-.-..-....+..|++++.++.+
T Consensus 78 ~i~it~G~~~~l~~~~~~l-~~~gd~Vlv~~p~y~~~~~~~~~~g~~~~~v~~~ 130 (351)
T PRK14807 78 NIFVGNGSDEIIHLIMLAF-INKGDVVIYPHPSFAMYSVYSKIAGAVEIPVKLK 130 (351)
T ss_pred cEEEecCHHHHHHHHHHHh-cCCCCEEEEeCCChHHHHHHHHHcCCeEEEeecC
Confidence 4565666666655555442 2212334444433334455678899999998754
No 401
>PRK06057 short chain dehydrogenase; Provisional
Probab=61.86 E-value=80 Score=25.11 Aligned_cols=53 Identities=19% Similarity=0.147 Sum_probs=36.3
Q ss_pred CeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHH-HHHHcCCEEEEeCCC
Q 028618 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRI-ILRAFGAELVLTDPA 125 (206)
Q Consensus 70 ~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~-~~~~~Ga~v~~~~~~ 125 (206)
++.+|+..+|.-|.+++......|.+++++.... .+.+ ..+..+.+++.++-.
T Consensus 8 ~~vlItGasggIG~~~a~~l~~~G~~v~~~~r~~---~~~~~~~~~~~~~~~~~D~~ 61 (255)
T PRK06057 8 RVAVITGGGSGIGLATARRLAAEGATVVVGDIDP---EAGKAAADEVGGLFVPTDVT 61 (255)
T ss_pred CEEEEECCCchHHHHHHHHHHHcCCEEEEEeCCH---HHHHHHHHHcCCcEEEeeCC
Confidence 4788999999999999999999999887775432 2222 223445556655544
No 402
>PF02887 PK_C: Pyruvate kinase, alpha/beta domain; InterPro: IPR015795 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the 3-layer alpha/beta/alpha sandwich domain. This domain has a similar topology to the archaeal hypothetical protein, MTH1675 from Methanobacterium thermoautotrophicum.; PDB: 3QTG_B 1VP8_A 1T57_C 3N25_A 1AQF_C 2G50_B 1F3X_G 1A5U_F 1A49_E 1F3W_C ....
Probab=61.76 E-value=54 Score=23.16 Aligned_cols=81 Identities=16% Similarity=0.152 Sum_probs=42.7
Q ss_pred HHHHHHHHHcCCCCCCCeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCC-ChHHHH
Q 028618 54 YSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAK-GMKGAV 132 (206)
Q Consensus 54 ~~~~~~a~~~g~~~~~~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~-~~~~~~ 132 (206)
...+..|.+-+. +..++...+|++++.+|.+ +-..|.+++.|... .-+++.-.+|..-+..+... +.++..
T Consensus 6 ~aa~~~A~~~~a----k~Ivv~T~sG~ta~~isk~--RP~~pIiavt~~~~--~~r~l~l~~GV~p~~~~~~~~~~~~~~ 77 (117)
T PF02887_consen 6 RAAVELAEDLNA----KAIVVFTESGRTARLISKY--RPKVPIIAVTPNES--VARQLSLYWGVYPVLIEEFDKDTEELI 77 (117)
T ss_dssp HHHHHHHHHHTE----SEEEEE-SSSHHHHHHHHT---TSSEEEEEESSHH--HHHHGGGSTTEEEEECSSHSHSHHHHH
T ss_pred HHHHHHHHhcCC----CEEEEECCCchHHHHHHhh--CCCCeEEEEcCcHH--HHhhhhcccceEEEEeccccccHHHHH
Confidence 334444555443 1344455667776655433 23466666655532 22333346777776666544 455666
Q ss_pred HHHHHHHHhC
Q 028618 133 QKAEEILAKT 142 (206)
Q Consensus 133 ~~a~~~~~~~ 142 (206)
+.+.+.+++.
T Consensus 78 ~~a~~~~~~~ 87 (117)
T PF02887_consen 78 AEALEYAKER 87 (117)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHc
Confidence 6666666665
No 403
>PRK07577 short chain dehydrogenase; Provisional
Probab=61.52 E-value=75 Score=24.71 Aligned_cols=48 Identities=23% Similarity=0.311 Sum_probs=35.5
Q ss_pred CeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCC
Q 028618 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPA 125 (206)
Q Consensus 70 ~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~ 125 (206)
+..+|+..+|-.|.++|......|.+++++...... ....+++..+-.
T Consensus 4 k~vlItG~s~~iG~~ia~~l~~~G~~v~~~~r~~~~--------~~~~~~~~~D~~ 51 (234)
T PRK07577 4 RTVLVTGATKGIGLALSLRLANLGHQVIGIARSAID--------DFPGELFACDLA 51 (234)
T ss_pred CEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCccc--------ccCceEEEeeCC
Confidence 367899999999999999999999998888765432 123466666544
No 404
>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....
Probab=61.44 E-value=63 Score=23.78 Aligned_cols=108 Identities=17% Similarity=0.135 Sum_probs=65.1
Q ss_pred EEeeCCCchHHHHHHHHHHCC--CcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHH-hCCCeEEcC
Q 028618 73 LIEPTSGNTGIGLAFMAAAKQ--YRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILA-KTPNAYMLQ 149 (206)
Q Consensus 73 vv~aSsGN~g~alA~~a~~~g--~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~-~~~~~~~~~ 149 (206)
.+-.|+|+=|.+.--..+++. ++++.+.-.+....-.++++.|..+.+.+..+ +..+..++... ...+.-+..
T Consensus 2 ~ILGsTGSIG~qtLdVi~~~~d~f~v~~Lsa~~n~~~L~~q~~~f~p~~v~i~~~----~~~~~l~~~~~~~~~~~~v~~ 77 (129)
T PF02670_consen 2 AILGSTGSIGTQTLDVIRKHPDKFEVVALSAGSNIEKLAEQAREFKPKYVVIADE----EAYEELKKALPSKGPGIEVLS 77 (129)
T ss_dssp EEESTTSHHHHHHHHHHHHCTTTEEEEEEEESSTHHHHHHHHHHHT-SEEEESSH----HHHHHHHHHHHHTTSSSEEEE
T ss_pred EEEcCCcHHHHHHHHHHHhCCCceEEEEEEcCCCHHHHHHHHHHhCCCEEEEcCH----HHHHHHHHHhhhcCCCCEEEe
Confidence 466899999999999999987 77777777666677788899999999888764 33333333332 222222211
Q ss_pred CCCCCccHHHHHHhHHHHHHhhhCCCCCEEEEccCcchHHHHHHHHHH
Q 028618 150 QFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLK 197 (206)
Q Consensus 150 ~~~~~~~~~~g~~t~~~Ei~~q~~~~~d~vv~~vG~Gg~~aGi~~~~k 197 (206)
...|. .|+.+. .++|.|+.++-+-.-+--...+++
T Consensus 78 -------G~~~l----~~~~~~--~~~D~vv~Ai~G~aGL~pt~~Ai~ 112 (129)
T PF02670_consen 78 -------GPEGL----EELAEE--PEVDIVVNAIVGFAGLKPTLAAIK 112 (129)
T ss_dssp -------SHHHH----HHHHTH--TT-SEEEE--SSGGGHHHHHHHHH
T ss_pred -------ChHHH----HHHhcC--CCCCEEEEeCcccchHHHHHHHHH
Confidence 12232 344443 468999999754444444455554
No 405
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=61.39 E-value=43 Score=27.10 Aligned_cols=114 Identities=11% Similarity=-0.016 Sum_probs=60.6
Q ss_pred EEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHH--------------HHHHcCCEEEEeCCCCChHHHHHHHHH
Q 028618 72 VLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRI--------------ILRAFGAELVLTDPAKGMKGAVQKAEE 137 (206)
Q Consensus 72 ~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~--------------~~~~~Ga~v~~~~~~~~~~~~~~~a~~ 137 (206)
.++...+|.-|..=+..-...|-+++|+.|+-.+..... .-...|+.+++...++ .+..+...+
T Consensus 27 ~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~el~~l~~~~~i~~~~r~~~~~dl~g~~LViaATdD--~~vN~~I~~ 104 (223)
T PRK05562 27 KVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSKEFLDLKKYGNLKLIKGNYDKEFIKDKHLIVIATDD--EKLNNKIRK 104 (223)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCChHHhCCCcEEEECCCC--HHHHHHHHH
Confidence 456666776665545555567777777777754432110 0113466666665442 345555566
Q ss_pred HHHhCCCeEEcCCCCCCccHHHHHHhHHHHHHhhhCCCCCEEEEccCcchHHHHHHHHHHh
Q 028618 138 ILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKE 198 (206)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~q~~~~~d~vv~~vG~Gg~~aGi~~~~k~ 198 (206)
.+++...++ +--++|.. + .-+.+-++ .-+-+.++++|||..-.+++.+++
T Consensus 105 ~a~~~~~lv--n~vd~p~~---~-dFi~PAiv-----~rg~l~IaIST~G~sP~lar~lR~ 154 (223)
T PRK05562 105 HCDRLYKLY--IDCSDYKK---G-LCIIPYQR-----STKNFVFALNTKGGSPKTSVFIGE 154 (223)
T ss_pred HHHHcCCeE--EEcCCccc---C-eEEeeeEE-----ecCCEEEEEECCCcCcHHHHHHHH
Confidence 666652232 22233322 0 00011111 125588889999888888887775
No 406
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=61.38 E-value=81 Score=25.33 Aligned_cols=32 Identities=19% Similarity=0.032 Sum_probs=24.3
Q ss_pred eEEEeeCC--CchHHHHHHHHHHCCCcEEEEeCC
Q 028618 71 SVLIEPTS--GNTGIGLAFMAAAKQYRLIITMPA 102 (206)
Q Consensus 71 ~~vv~aSs--GN~g~alA~~a~~~g~~~~ivvp~ 102 (206)
..+|+..+ +--|.++|......|.++++....
T Consensus 12 ~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~ 45 (258)
T PRK07533 12 RGLVVGIANEQSIAWGCARAFRALGAELAVTYLN 45 (258)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCC
Confidence 56677654 479999999999999987776543
No 407
>PRK02255 putrescine carbamoyltransferase; Provisional
Probab=61.38 E-value=51 Score=28.42 Aligned_cols=52 Identities=17% Similarity=0.255 Sum_probs=35.6
Q ss_pred eEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCC--CCHHHHHHHH----HcCCEEEEe
Q 028618 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPAS--MSLERRIILR----AFGAELVLT 122 (206)
Q Consensus 71 ~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~--~~~~~~~~~~----~~Ga~v~~~ 122 (206)
+..+..-..|.+++++.+++++|++++++.|+. .+...++.++ ..|.++...
T Consensus 156 kv~~vGD~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~ 213 (338)
T PRK02255 156 KVVFVGDATQVCVSLMFIATKMGMDFVHFGPKGYQLPEEHLAIAEENCEVSGGSVLVT 213 (338)
T ss_pred EEEEECCCchHHHHHHHHHHhCCCEEEEECCCccccCHHHHHHHHHHHHhcCCeEEEE
Confidence 334444447899999999999999999999986 3334443332 356666554
No 408
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=61.30 E-value=98 Score=25.95 Aligned_cols=53 Identities=23% Similarity=0.258 Sum_probs=36.5
Q ss_pred CCCCCeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 028618 66 ITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 121 (206)
Q Consensus 66 ~~~~~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~ 121 (206)
..+++..+|. .+|..|.+++..|+.+|.+.++++. .+..+...++.+|++.+.
T Consensus 173 ~~~~~~vlI~-g~g~vg~~~~~~a~~~G~~~v~~~~--~~~~~~~~~~~~g~~~~~ 225 (350)
T cd08240 173 LVADEPVVII-GAGGLGLMALALLKALGPANIIVVD--IDEAKLEAAKAAGADVVV 225 (350)
T ss_pred CCCCCEEEEE-CCcHHHHHHHHHHHHcCCCeEEEEe--CCHHHHHHHHHhCCcEEe
Confidence 3345445554 6799999999999999996554443 345667777788876443
No 409
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=61.29 E-value=52 Score=22.76 Aligned_cols=49 Identities=20% Similarity=0.187 Sum_probs=32.4
Q ss_pred EeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCC
Q 028618 74 IEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPA 125 (206)
Q Consensus 74 v~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~ 125 (206)
+....|+.|..++-.-+..+.+++++-. .+.+.+.++..|.+++.-+..
T Consensus 2 vI~G~g~~~~~i~~~L~~~~~~vvvid~---d~~~~~~~~~~~~~~i~gd~~ 50 (116)
T PF02254_consen 2 VIIGYGRIGREIAEQLKEGGIDVVVIDR---DPERVEELREEGVEVIYGDAT 50 (116)
T ss_dssp EEES-SHHHHHHHHHHHHTTSEEEEEES---SHHHHHHHHHTTSEEEES-TT
T ss_pred EEEcCCHHHHHHHHHHHhCCCEEEEEEC---CcHHHHHHHhcccccccccch
Confidence 4556678888888888886767777733 445577777777776664443
No 410
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=61.21 E-value=82 Score=25.03 Aligned_cols=33 Identities=15% Similarity=0.134 Sum_probs=27.8
Q ss_pred CeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCC
Q 028618 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPA 102 (206)
Q Consensus 70 ~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~ 102 (206)
+..+|+..+|.-|.++|......|.+++++-..
T Consensus 3 k~ilItG~~~~IG~~la~~l~~~g~~vi~~~r~ 35 (259)
T PRK12384 3 QVAVVIGGGQTLGAFLCHGLAEEGYRVAVADIN 35 (259)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence 367899999999999999999999988777543
No 411
>PRK02842 light-independent protochlorophyllide reductase subunit N; Provisional
Probab=61.19 E-value=1.2e+02 Score=26.88 Aligned_cols=54 Identities=9% Similarity=-0.020 Sum_probs=36.9
Q ss_pred eEEEeeCCCchHHHHHHHHHH-CCCcEEEEeCCCCCHHH-HHHHHHcCCEEEEeCC
Q 028618 71 SVLIEPTSGNTGIGLAFMAAA-KQYRLIITMPASMSLER-RIILRAFGAELVLTDP 124 (206)
Q Consensus 71 ~~vv~aSsGN~g~alA~~a~~-~g~~~~ivvp~~~~~~~-~~~~~~~Ga~v~~~~~ 124 (206)
+.++....+....+++..... +|+.++.+......... .+.++.+..++..++.
T Consensus 291 krvai~g~~~~~~~la~~L~eelGm~~v~v~t~~~~~~~~~~~~~~l~~~~~v~~~ 346 (427)
T PRK02842 291 KRVFFLPDSQLEIPLARFLSRECGMELVEVGTPYLNRRFLAAELALLPDGVRIVEG 346 (427)
T ss_pred cEEEEECCchhHHHHHHHHHHhCCCEEEEeCCCCCCHHHHHHHHHhccCCCEEEEC
Confidence 356667778889999999988 99999888766543333 4445656545444444
No 412
>PF12000 Glyco_trans_4_3: Gkycosyl transferase family 4 group; InterPro: IPR022623 This presumed domain is functionally uncharacterised and found in bacteria. This region is about 170 amino acids in length and is found N-terminal to PF00534 from PFAM. There is a single completely conserved residue G that may be functionally important.
Probab=61.12 E-value=18 Score=27.96 Aligned_cols=38 Identities=24% Similarity=0.290 Sum_probs=27.5
Q ss_pred hHHHHHHhhhCCCCCEEEEccCcchHHHHHHHHHHhcCCCCeEC
Q 028618 163 TTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKVR 206 (206)
Q Consensus 163 t~~~Ei~~q~~~~~d~vv~~vG~Gg~~aGi~~~~k~~~p~~~vi 206 (206)
..+.++.+| +-.||.|+.=.|=|. ..++|+.+|++++|
T Consensus 55 ~a~~~L~~~-Gf~PDvI~~H~GWGe-----~Lflkdv~P~a~li 92 (171)
T PF12000_consen 55 RAARQLRAQ-GFVPDVIIAHPGWGE-----TLFLKDVFPDAPLI 92 (171)
T ss_pred HHHHHHHHc-CCCCCEEEEcCCcch-----hhhHHHhCCCCcEE
Confidence 334444444 557999988887766 45799999999875
No 413
>PRK12831 putative oxidoreductase; Provisional
Probab=61.03 E-value=39 Score=30.28 Aligned_cols=52 Identities=17% Similarity=0.073 Sum_probs=39.6
Q ss_pred eEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCC---C--CHHHHHHHHHcCCEEEEe
Q 028618 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPAS---M--SLERRIILRAFGAELVLT 122 (206)
Q Consensus 71 ~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~---~--~~~~~~~~~~~Ga~v~~~ 122 (206)
+.++.-.+||.|.-+|..+.++|.+++++.... . ....++.++..|.+++..
T Consensus 282 k~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~~~~m~a~~~e~~~a~~eGV~i~~~ 338 (464)
T PRK12831 282 KKVAVVGGGNVAMDAARTALRLGAEVHIVYRRSEEELPARVEEVHHAKEEGVIFDLL 338 (464)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCEEEEEeecCcccCCCCHHHHHHHHHcCCEEEec
Confidence 468889999999999999999999988887643 2 234445567788877643
No 414
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=60.96 E-value=84 Score=28.74 Aligned_cols=103 Identities=25% Similarity=0.240 Sum_probs=63.9
Q ss_pred eEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEcCC
Q 028618 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQ 150 (206)
Q Consensus 71 ~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 150 (206)
+++..-.-|+-|.++|..++.+|+++++|-|.. +.. ....+|.+.. + .+ ++.++- +...+.-
T Consensus 141 ktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~-~~~---~~~~~g~~~~----~--l~-------ell~~a-DiV~l~l 202 (526)
T PRK13581 141 KTLGIIGLGRIGSEVAKRAKAFGMKVIAYDPYI-SPE---RAAQLGVELV----S--LD-------ELLARA-DFITLHT 202 (526)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEECCCC-Chh---HHHhcCCEEE----c--HH-------HHHhhC-CEEEEcc
Confidence 467777889999999999999999998887643 222 2234565432 1 22 233333 4555433
Q ss_pred CCCCccHHHHHHhHHHHHHhhhCCCCCEEEEccCcchHH--HHHHHHHH
Q 028618 151 FENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTI--TGAGKFLK 197 (206)
Q Consensus 151 ~~~~~~~~~g~~t~~~Ei~~q~~~~~d~vv~~vG~Gg~~--aGi~~~~k 197 (206)
..++.+ ...+..+.++++ +++.+++-+|-|+.+ ..+..+++
T Consensus 203 P~t~~t----~~li~~~~l~~m--k~ga~lIN~aRG~~vde~aL~~aL~ 245 (526)
T PRK13581 203 PLTPET----RGLIGAEELAKM--KPGVRIINCARGGIIDEAALAEALK 245 (526)
T ss_pred CCChHh----hcCcCHHHHhcC--CCCeEEEECCCCceeCHHHHHHHHh
Confidence 333322 233446777777 468999999998875 34444444
No 415
>COG2390 DeoR Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]
Probab=60.86 E-value=1.1e+02 Score=26.27 Aligned_cols=20 Identities=30% Similarity=0.401 Sum_probs=12.2
Q ss_pred EEccCcchHHHHHHHHHHhc
Q 028618 180 VSGIGTGGTITGAGKFLKEK 199 (206)
Q Consensus 180 v~~vG~Gg~~aGi~~~~k~~ 199 (206)
++++|.|.|+..++..+-..
T Consensus 117 vigV~wGrTv~a~~~~l~~~ 136 (321)
T COG2390 117 VIGVGWGRTLSAVVDNLPPA 136 (321)
T ss_pred EEEEeccHHHHHHHHhcCcC
Confidence 56666666666666655433
No 416
>PRK14805 ornithine carbamoyltransferase; Provisional
Probab=60.81 E-value=36 Score=28.82 Aligned_cols=53 Identities=19% Similarity=0.162 Sum_probs=36.1
Q ss_pred eEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCC-C-HHHHH----HHHHcCCEEEEeC
Q 028618 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASM-S-LERRI----ILRAFGAELVLTD 123 (206)
Q Consensus 71 ~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~-~-~~~~~----~~~~~Ga~v~~~~ 123 (206)
+..+.+-..|.+++++.+++++|++++++.|+.. + ...++ ..+..|+++...+
T Consensus 149 kva~vGD~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~a~~~~~~~g~~~~~~~ 207 (302)
T PRK14805 149 KLAYVGDGNNVTHSLMYGAAILGATMTVICPPGHFPDGQIVAEAQELAAKSGGKLVLTS 207 (302)
T ss_pred EEEEEcCCCccHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCEEEEEc
Confidence 3334444467889999999999999999999863 2 22222 2355688776654
No 417
>PRK12827 short chain dehydrogenase; Provisional
Probab=60.55 E-value=80 Score=24.70 Aligned_cols=56 Identities=23% Similarity=0.159 Sum_probs=38.3
Q ss_pred CeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCC-CHHH----HHHHHHcCCEEEEeCCC
Q 028618 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASM-SLER----RIILRAFGAELVLTDPA 125 (206)
Q Consensus 70 ~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~-~~~~----~~~~~~~Ga~v~~~~~~ 125 (206)
++.+|+..+|-.|.++|......|.+++++..... ...+ ...+...+.++..+..+
T Consensus 7 ~~ilItGasg~iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D 67 (249)
T PRK12827 7 RRVLITGGSGGLGRAIAVRLAADGADVIVLDIHPMRGRAEADAVAAGIEAAGGKALGLAFD 67 (249)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCeEEEEcCcccccHHHHHHHHHHHHhcCCcEEEEEcc
Confidence 36789999999999999999899998777654321 1222 23445567777666554
No 418
>PRK06180 short chain dehydrogenase; Provisional
Probab=60.39 E-value=72 Score=25.86 Aligned_cols=33 Identities=30% Similarity=0.248 Sum_probs=27.9
Q ss_pred CeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCC
Q 028618 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPA 102 (206)
Q Consensus 70 ~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~ 102 (206)
+..+|+..+|--|.+++......|.+++++...
T Consensus 5 ~~vlVtGasggiG~~la~~l~~~G~~V~~~~r~ 37 (277)
T PRK06180 5 KTWLITGVSSGFGRALAQAALAAGHRVVGTVRS 37 (277)
T ss_pred CEEEEecCCChHHHHHHHHHHhCcCEEEEEeCC
Confidence 367899999999999999999999998777653
No 419
>PRK09545 znuA high-affinity zinc transporter periplasmic component; Reviewed
Probab=60.28 E-value=71 Score=26.99 Aligned_cols=85 Identities=14% Similarity=0.066 Sum_probs=51.7
Q ss_pred HHHHHHHHCCCcEEEEe---CCCC-CHH----HHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCe-EEcCCCCCC
Q 028618 84 GLAFMAAAKQYRLIITM---PASM-SLE----RRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNA-YMLQQFENP 154 (206)
Q Consensus 84 alA~~a~~~g~~~~ivv---p~~~-~~~----~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~ 154 (206)
++.|.++.+|++.+.++ |+.. ++. -++.++..+.++++++.... -+.++.++++.+.. ..++++...
T Consensus 212 af~Yf~~~ygl~~~~~~~~~~~~eps~~~l~~l~~~ik~~~v~~If~e~~~~----~~~~~~la~e~g~~v~~ldpl~~~ 287 (311)
T PRK09545 212 AYGYFEKHYGLTPLGHFTVNPEIQPGAQRLHEIRTQLVEQKATCVFAEPQFR----PAVIESVAKGTSVRMGTLDPLGTN 287 (311)
T ss_pred hHHHHHHhCCCceeeeeccCCCCCCCHHHHHHHHHHHHHcCCCEEEecCCCC----hHHHHHHHHhcCCeEEEecccccc
Confidence 88999999999987655 3332 222 35567889999999997632 23455556655322 345666543
Q ss_pred ccH-HHHHHhHHHHHHhhh
Q 028618 155 ANP-KIHYETTGPELWKGS 172 (206)
Q Consensus 155 ~~~-~~g~~t~~~Ei~~q~ 172 (206)
... ...|..+..+..+++
T Consensus 288 ~~~~~~~Y~~~m~~n~~~l 306 (311)
T PRK09545 288 IKLGKDSYSEFLSQLANQY 306 (311)
T ss_pred ccCCHhHHHHHHHHHHHHH
Confidence 321 135555555555544
No 420
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=60.17 E-value=79 Score=26.41 Aligned_cols=54 Identities=22% Similarity=0.435 Sum_probs=36.9
Q ss_pred cCCCCCCCeEEEeeCCCchHHHHHHHHHHCC-CcEEEEeCCCCCHHHHHHHHHcCCEEE
Q 028618 63 KGLITPGESVLIEPTSGNTGIGLAFMAAAKQ-YRLIITMPASMSLERRIILRAFGAELV 120 (206)
Q Consensus 63 ~g~~~~~~~~vv~aSsGN~g~alA~~a~~~g-~~~~ivvp~~~~~~~~~~~~~~Ga~v~ 120 (206)
...+.+++..+|. .+|..|.+++..|+.+| .++++ + +.++.+...++.+|++-+
T Consensus 161 ~~~~~~g~~vlI~-g~g~~g~~~~~~a~~~G~~~v~~-~--~~~~~~~~~~~~~g~~~~ 215 (345)
T cd08286 161 NGKVKPGDTVAIV-GAGPVGLAALLTAQLYSPSKIIM-V--DLDDNRLEVAKKLGATHT 215 (345)
T ss_pred hcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCeEEE-E--cCCHHHHHHHHHhCCCce
Confidence 3345666666775 46999999999999999 55444 3 334566677777887433
No 421
>PRK07825 short chain dehydrogenase; Provisional
Probab=60.06 E-value=90 Score=25.11 Aligned_cols=53 Identities=19% Similarity=-0.006 Sum_probs=35.2
Q ss_pred CeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHH-HHHcC-CEEEEeCCC
Q 028618 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRII-LRAFG-AELVLTDPA 125 (206)
Q Consensus 70 ~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~-~~~~G-a~v~~~~~~ 125 (206)
+..+|+..+|..|.++|......|.+++++... +.+.+. .+..+ .+++.++-.
T Consensus 6 ~~ilVtGasggiG~~la~~l~~~G~~v~~~~r~---~~~~~~~~~~~~~~~~~~~D~~ 60 (273)
T PRK07825 6 KVVAITGGARGIGLATARALAALGARVAIGDLD---EALAKETAAELGLVVGGPLDVT 60 (273)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEECC---HHHHHHHHHHhccceEEEccCC
Confidence 367899999999999999988899987766542 222222 23344 555555544
No 422
>cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn). AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein
Probab=59.86 E-value=85 Score=26.24 Aligned_cols=53 Identities=19% Similarity=0.172 Sum_probs=33.6
Q ss_pred EEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCC
Q 028618 73 LIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPA 125 (206)
Q Consensus 73 vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~ 125 (206)
++..++|..+..++..+-..+-.-.|++|...-......++..|++++.++.+
T Consensus 36 ~~~~~sgt~al~~~l~~l~~~~gd~vl~~~~~~~~~~~~~~~~g~~~~~~~~~ 88 (352)
T cd00616 36 AVAVSSGTAALHLALRALGIGPGDEVIVPSFTFVATANAILLLGATPVFVDID 88 (352)
T ss_pred EEEECCHHHHHHHHHHHcCCCCCCEEEeCCcchHHHHHHHHHcCCeEEEEecC
Confidence 44455666665555544322223467777776666677788889998888754
No 423
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=59.73 E-value=1e+02 Score=25.64 Aligned_cols=56 Identities=29% Similarity=0.395 Sum_probs=36.9
Q ss_pred HcCCCCCCCeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEE
Q 028618 62 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 120 (206)
Q Consensus 62 ~~g~~~~~~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~ 120 (206)
+...+.+++..+|.+ +|-.|.+++..|+..|++.+++. ..++.+.+.++.+|++-+
T Consensus 159 ~~~~~~~g~~VlV~g-~g~vg~~~~~la~~~g~~~v~~~--~~s~~~~~~~~~~g~~~~ 214 (343)
T cd08235 159 RKAGIKPGDTVLVIG-AGPIGLLHAMLAKASGARKVIVS--DLNEFRLEFAKKLGADYT 214 (343)
T ss_pred HhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCcEEEEE--CCCHHHHHHHHHhCCcEE
Confidence 334567776777764 67899999999999999943333 223445555566776443
No 424
>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.
Probab=59.65 E-value=62 Score=27.26 Aligned_cols=51 Identities=10% Similarity=0.132 Sum_probs=26.6
Q ss_pred EEeeCCCchHHHHHHHHH-HCCCcEEEEeCC--CCCHHHHHHHHHcCCEEEEeCCC
Q 028618 73 LIEPTSGNTGIGLAFMAA-AKQYRLIITMPA--SMSLERRIILRAFGAELVLTDPA 125 (206)
Q Consensus 73 vv~aSsGN~g~alA~~a~-~~g~~~~ivvp~--~~~~~~~~~~~~~Ga~v~~~~~~ 125 (206)
++..++|..+..++..+- .-|- .|+++. ..+..-....+.+|++++.++.+
T Consensus 53 ~~~~~~~t~al~~~~~~~~~~g~--~vl~~~~~~~~~~~~~~~~~~g~~~~~v~~~ 106 (356)
T cd06451 53 FLLSGSGTGAMEAALSNLLEPGD--KVLVGVNGVFGDRWADMAERYGADVDVVEKP 106 (356)
T ss_pred EEEecCcHHHHHHHHHHhCCCCC--EEEEecCCchhHHHHHHHHHhCCCeEEeecC
Confidence 444555555555555442 2242 333332 22222345667889998888754
No 425
>PLN00175 aminotransferase family protein; Provisional
Probab=59.54 E-value=1.2e+02 Score=26.48 Aligned_cols=83 Identities=10% Similarity=0.064 Sum_probs=42.9
Q ss_pred EEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCC-ChHHHHHHHHHHHHhCCCeEEcCC
Q 028618 72 VLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAK-GMKGAVQKAEEILAKTPNAYMLQQ 150 (206)
Q Consensus 72 ~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~ 150 (206)
.|+..+++..|..++..+- ++-.-.|++++-.-..-...++.+|++++.++-+. .+.-..+..++........++++.
T Consensus 117 ~I~vt~G~~~al~~~~~~l-~~~gd~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~l~~~~~~~~k~i~i~~ 195 (413)
T PLN00175 117 EVTVTSGCTEAIAATILGL-INPGDEVILFAPFYDSYEATLSMAGAKIKTVTLRPPDFAVPEDELKAAFTSKTRAILINT 195 (413)
T ss_pred CEEEeCCHHHHHHHHHHHh-CCCCCEEEEeCCCchhHHHHHHHcCCEEEEEECCcccCCCCHHHHHHhcCcCceEEEecC
Confidence 3666666677776665543 22223444444333444667788999999987531 111111222222223335666654
Q ss_pred CCCCc
Q 028618 151 FENPA 155 (206)
Q Consensus 151 ~~~~~ 155 (206)
..||.
T Consensus 196 p~NPt 200 (413)
T PLN00175 196 PHNPT 200 (413)
T ss_pred CCCCC
Confidence 45544
No 426
>PRK06836 aspartate aminotransferase; Provisional
Probab=59.40 E-value=1.2e+02 Score=26.24 Aligned_cols=82 Identities=15% Similarity=0.207 Sum_probs=41.7
Q ss_pred EEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCC-hHHHHHHHHHHHHhCCCeEEcCC
Q 028618 72 VLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKG-MKGAVQKAEEILAKTPNAYMLQQ 150 (206)
Q Consensus 72 ~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~ 150 (206)
.++..++++.+..++..+- ..-.-.|++|.-.-..-...++.+|++++.++.+.. +.-..+..++...+....+++..
T Consensus 98 ~i~~t~G~~~al~~~~~~l-~~~gd~Vli~~p~~~~~~~~~~~~g~~v~~v~~~~~~~~~d~~~l~~~~~~~~~~v~~~~ 176 (394)
T PRK06836 98 HIVMTCGAAGALNVALKAI-LNPGDEVIVFAPYFVEYRFYVDNHGGKLVVVPTDTDTFQPDLDALEAAITPKTKAVIINS 176 (394)
T ss_pred cEEEeCChHHHHHHHHHHh-cCCCCEEEEcCCCCccHHHHHHHcCCEEEEEecCCccCcCCHHHHHhhcCcCceEEEEeC
Confidence 4666666667766554442 222234455553333345567889999999976421 11112223333333445666544
Q ss_pred CCCC
Q 028618 151 FENP 154 (206)
Q Consensus 151 ~~~~ 154 (206)
..||
T Consensus 177 p~NP 180 (394)
T PRK06836 177 PNNP 180 (394)
T ss_pred CCCC
Confidence 3444
No 427
>PF00289 CPSase_L_chain: Carbamoyl-phosphate synthase L chain, N-terminal domain; InterPro: IPR005481 Carbamoyl phosphate synthase (CPSase) is a heterodimeric enzyme composed of a small and a large subunit (with the exception of CPSase III, see below). CPSase catalyses the synthesis of carbamoyl phosphate from biocarbonate, ATP and glutamine (6.3.5.5 from EC) or ammonia (6.3.4.16 from EC), and represents the first committed step in pyrimidine and arginine biosynthesis in prokaryotes and eukaryotes, and in the urea cycle in most terrestrial vertebrates [, ]. CPSase has three active sites, one in the small subunit and two in the large subunit. The small subunit contains the glutamine binding site and catalyses the hydrolysis of glutamine to glutamate and ammonia. The large subunit has two homologous carboxy phosphate domains, both of which have ATP-binding sites; however, the N-terminal carboxy phosphate domain catalyses the phosphorylation of biocarbonate, while the C-terminal domain catalyses the phosphorylation of the carbamate intermediate []. The carboxy phosphate domain found duplicated in the large subunit of CPSase is also present as a single copy in the biotin-dependent enzymes acetyl-CoA carboxylase (6.4.1.2 from EC) (ACC), propionyl-CoA carboxylase (6.4.1.3 from EC) (PCCase), pyruvate carboxylase (6.4.1.1 from EC) (PC) and urea carboxylase (6.3.4.6 from EC). Most prokaryotes carry one form of CPSase that participates in both arginine and pyrimidine biosynthesis, however certain bacteria can have separate forms. The large subunit in bacterial CPSase has four structural domains: the carboxy phosphate domain 1, the oligomerisation domain, the carbamoyl phosphate domain 2 and the allosteric domain []. CPSase heterodimers from Escherichia coli contain two molecular tunnels: an ammonia tunnel and a carbamate tunnel. These inter-domain tunnels connect the three distinct active sites, and function as conduits for the transport of unstable reaction intermediates (ammonia and carbamate) between successive active sites []. The catalytic mechanism of CPSase involves the diffusion of carbamate through the interior of the enzyme from the site of synthesis within the N-terminal domain of the large subunit to the site of phosphorylation within the C-terminal domain. Eukaryotes have two distinct forms of CPSase: a mitochondrial enzyme (CPSase I) that participates in both arginine biosynthesis and the urea cycle; and a cytosolic enzyme (CPSase II) involved in pyrimidine biosynthesis. CPSase II occurs as part of a multi-enzyme complex along with aspartate transcarbamoylase and dihydroorotase; this complex is referred to as the CAD protein []. The hepatic expression of CPSase is transcriptionally regulated by glucocorticoids and/or cAMP []. There is a third form of the enzyme, CPSase III, found in fish, which uses glutamine as a nitrogen source instead of ammonia []. CPSase III is closely related to CPSase I, and is composed of a single polypeptide that may have arisen from gene fusion of the glutaminase and synthetase domains []. This entry represents the N-terminal domain of the large subunit of carbamoyl phosphate synthase. This domain can also be found in certain other related proteins. ; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VA7_A 3OUU_A 3OUZ_B 1W96_B 1W93_A 1ULZ_A 3HB9_C 3HO8_A 3BG5_C 3HBL_A ....
Probab=59.36 E-value=61 Score=22.97 Aligned_cols=49 Identities=4% Similarity=0.020 Sum_probs=34.2
Q ss_pred EEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeC
Q 028618 72 VLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTD 123 (206)
Q Consensus 72 ~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~ 123 (206)
.+..+-+|-.+.-...+|+.+|++++++-+...... .-...--+++..+
T Consensus 4 kvLIanrGeia~r~~ra~r~~Gi~tv~v~s~~d~~s---~~~~~ad~~~~~~ 52 (110)
T PF00289_consen 4 KVLIANRGEIAVRIIRALRELGIETVAVNSNPDTVS---THVDMADEAYFEP 52 (110)
T ss_dssp EEEESS-HHHHHHHHHHHHHTTSEEEEEEEGGGTTG---HHHHHSSEEEEEE
T ss_pred EEEEECCCHHHHHHHHHHHHhCCcceeccCchhccc---ccccccccceecC
Confidence 577788899999999999999999999975532211 1223444667776
No 428
>cd00288 Pyruvate_Kinase Pyruvate kinase (PK): Large allosteric enzyme that regulates glycolysis through binding of the substrate, phosphoenolpyruvate, and one or more allosteric effectors. Like other allosteric enzymes, PK has a high substrate affinity R state and a low affinity T state. PK exists as several different isozymes, depending on organism and tissue type. In mammals, there are four PK isozymes: R, found in red blood cells, L, found in liver, M1, found in skeletal muscle, and M2, found in kidney, adipose tissue, and lung. PK forms a homotetramer, with each subunit containing three domains. The T state to R state transition of PK is more complex than in most allosteric enzymes, involving a concerted rotation of all 3 domains of each monomer in the homotetramer.
Probab=59.31 E-value=87 Score=28.41 Aligned_cols=86 Identities=15% Similarity=0.153 Sum_probs=41.9
Q ss_pred hhhHHHHHHHHHHHHcCCCCCCCeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCC--
Q 028618 48 VKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPA-- 125 (206)
Q Consensus 48 ~K~R~a~~~~~~a~~~g~~~~~~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~-- 125 (206)
.++..+...+..|.+-+. +..++...+|.+++.++.+ +-.++.+++.|... .-++..-.+|..-+.++..
T Consensus 359 ~~~aia~sAv~~A~~l~a----kaIVv~T~SG~TA~~lS~~--RP~~pIiavT~~~~--~~r~l~l~~GV~p~~~~~~~~ 430 (480)
T cd00288 359 TTEAVAMSAVRAAFELGA----KAIVVLTTSGRTARLVSKY--RPNAPIIAVTRNEQ--TARQLHLYRGVYPVLFEEPKP 430 (480)
T ss_pred hHHHHHHHHHHHHHhcCC----CEEEEECCCcHHHHHHHhh--CCCCCEEEEcCCHH--HhhheeeccCcEEEEeccccc
Confidence 455555555555555443 1233333557776655443 44566666655532 1122223467666665432
Q ss_pred ---CChHHHHHHHHHHHHh
Q 028618 126 ---KGMKGAVQKAEEILAK 141 (206)
Q Consensus 126 ---~~~~~~~~~a~~~~~~ 141 (206)
.+.++....+.+.+++
T Consensus 431 ~~~~~~~~~~~~~~~~~~~ 449 (480)
T cd00288 431 GWQEDTDARLKAAVNVAKE 449 (480)
T ss_pred ccCCCHHHHHHHHHHHHHH
Confidence 2234445555555544
No 429
>PRK15452 putative protease; Provisional
Probab=59.31 E-value=1.3e+02 Score=26.90 Aligned_cols=100 Identities=15% Similarity=0.099 Sum_probs=55.9
Q ss_pred EEEeCCCCCHHHHHHHHHcCCEEEEeCCCCC--------h-HHHHHHHHHHHHhCCCeEEcCCCCCCccHHHHHHhHHHH
Q 028618 97 IITMPASMSLERRIILRAFGAELVLTDPAKG--------M-KGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPE 167 (206)
Q Consensus 97 ~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~--------~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~E 167 (206)
-+.+|... ..+++..-..||+-+.++.+.. + .+....+.+++.+.+...|+--..-+ .........+
T Consensus 5 eLlapag~-~e~l~aAi~~GADaVY~G~~~~~~R~~~~~f~~edl~eav~~ah~~g~kvyvt~n~i~---~e~el~~~~~ 80 (443)
T PRK15452 5 ELLSPAGT-LKNMRYAFAYGADAVYAGQPRYSLRVRNNEFNHENLALGINEAHALGKKFYVVVNIAP---HNAKLKTFIR 80 (443)
T ss_pred EEEEECCC-HHHHHHHHHCCCCEEEECCCccchhhhccCCCHHHHHHHHHHHHHcCCEEEEEecCcC---CHHHHHHHHH
Confidence 35556553 3445555678999999975421 1 13355566677776555554211111 1122222234
Q ss_pred HHhhhCC-CCCEEEEccCcchHHHHHHHHHHhcCCCCeEC
Q 028618 168 LWKGSGG-RIDALVSGIGTGGTITGAGKFLKEKNPNIKVR 206 (206)
Q Consensus 168 i~~q~~~-~~d~vv~~vG~Gg~~aGi~~~~k~~~p~~~vi 206 (206)
.++++.. .+|.|++.- -|+...+++..|+.+|+
T Consensus 81 ~l~~l~~~gvDgvIV~d------~G~l~~~ke~~p~l~ih 114 (443)
T PRK15452 81 DLEPVIAMKPDALIMSD------PGLIMMVREHFPEMPIH 114 (443)
T ss_pred HHHHHHhCCCCEEEEcC------HHHHHHHHHhCCCCeEE
Confidence 4455422 489998863 36677788888887763
No 430
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=59.30 E-value=60 Score=27.71 Aligned_cols=55 Identities=18% Similarity=0.282 Sum_probs=36.0
Q ss_pred CCCCCCCeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 028618 64 GLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 121 (206)
Q Consensus 64 g~~~~~~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~ 121 (206)
+...+|+..+| ..+|.-|.+++..|+.+|.+++++.... ..+.+..+.+|++.++
T Consensus 179 ~~~~~g~~VlV-~G~G~vG~~avq~Ak~~Ga~vi~~~~~~--~~~~~~~~~~Ga~~vi 233 (360)
T PLN02586 179 GMTEPGKHLGV-AGLGGLGHVAVKIGKAFGLKVTVISSSS--NKEDEAINRLGADSFL 233 (360)
T ss_pred cccCCCCEEEE-ECCCHHHHHHHHHHHHCCCEEEEEeCCc--chhhhHHHhCCCcEEE
Confidence 33456655555 6679999999999999999865543332 2234455678886544
No 431
>PRK06482 short chain dehydrogenase; Provisional
Probab=59.27 E-value=68 Score=25.87 Aligned_cols=52 Identities=19% Similarity=0.180 Sum_probs=35.3
Q ss_pred eEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHH-HcCCEEEEeCCC
Q 028618 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILR-AFGAELVLTDPA 125 (206)
Q Consensus 71 ~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~-~~Ga~v~~~~~~ 125 (206)
..+|+..+|.-|.++|......|.+++++... +.+++.++ ..+.++..+..|
T Consensus 4 ~vlVtGasg~IG~~la~~L~~~g~~v~~~~r~---~~~~~~~~~~~~~~~~~~~~D 56 (276)
T PRK06482 4 TWFITGASSGFGRGMTERLLARGDRVAATVRR---PDALDDLKARYGDRLWVLQLD 56 (276)
T ss_pred EEEEecCCCHHHHHHHHHHHHCCCEEEEEeCC---HHHHHHHHHhccCceEEEEcc
Confidence 57899999999999999998999988877654 23333332 334455444433
No 432
>PRK14804 ornithine carbamoyltransferase; Provisional
Probab=59.24 E-value=49 Score=28.09 Aligned_cols=35 Identities=17% Similarity=0.094 Sum_probs=29.0
Q ss_pred eEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCC
Q 028618 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS 105 (206)
Q Consensus 71 ~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~ 105 (206)
+..+.+-.+|.++++..+++.+|+.++++.|+..+
T Consensus 155 ~va~vGd~~rv~~Sl~~~~~~~G~~v~~~~P~~~~ 189 (311)
T PRK14804 155 QLTYIGVHNNVVNSLIGITAALGIHLTLVTPIAAK 189 (311)
T ss_pred EEEEECCCCcHHHHHHHHHHHcCCEEEEECCCCcc
Confidence 44444556899999999999999999999998854
No 433
>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases. Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et
Probab=59.21 E-value=92 Score=24.99 Aligned_cols=50 Identities=34% Similarity=0.466 Sum_probs=36.3
Q ss_pred CCCCCCCeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCC
Q 028618 64 GLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGA 117 (206)
Q Consensus 64 g~~~~~~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga 117 (206)
+.+.+++..+|...+|..|.+++..++..|+++++..+.. +.+.++.+|+
T Consensus 140 ~~~~~~~~vlv~g~~g~~g~~~~~~a~~~g~~v~~~~~~~----~~~~~~~~g~ 189 (309)
T cd05289 140 GGLKAGQTVLIHGAAGGVGSFAVQLAKARGARVIATASAA----NADFLRSLGA 189 (309)
T ss_pred cCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEEEEecch----hHHHHHHcCC
Confidence 4456666666666679999999999999999977665432 4555566775
No 434
>PRK12746 short chain dehydrogenase; Provisional
Probab=59.18 E-value=88 Score=24.73 Aligned_cols=56 Identities=16% Similarity=0.147 Sum_probs=36.1
Q ss_pred CeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCH--HHHHHHHHcCCEEEEeCCC
Q 028618 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSL--ERRIILRAFGAELVLTDPA 125 (206)
Q Consensus 70 ~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~--~~~~~~~~~Ga~v~~~~~~ 125 (206)
+..+|+..+|--|.++|......|.++++....+... ...+.+...+.++..+..|
T Consensus 7 ~~ilItGasg~iG~~la~~l~~~G~~v~i~~~r~~~~~~~~~~~~~~~~~~~~~~~~D 64 (254)
T PRK12746 7 KVALVTGASRGIGRAIAMRLANDGALVAIHYGRNKQAADETIREIESNGGKAFLIEAD 64 (254)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhcCCcEEEEEcC
Confidence 3688999999999999999988998877654333211 1122334445566555443
No 435
>PRK06849 hypothetical protein; Provisional
Probab=59.00 E-value=1.1e+02 Score=26.47 Aligned_cols=32 Identities=19% Similarity=0.195 Sum_probs=25.4
Q ss_pred eEEEeeCCCchHHHHHHHHHHCCCcEEEEeCC
Q 028618 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPA 102 (206)
Q Consensus 71 ~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~ 102 (206)
+.+|+.++.+.+..+|.+.++.|++++++-..
T Consensus 6 ~VLI~G~~~~~~l~iar~l~~~G~~Vi~~d~~ 37 (389)
T PRK06849 6 TVLITGARAPAALELARLFHNAGHTVILADSL 37 (389)
T ss_pred EEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 56777777777899999999999988887554
No 436
>PRK08335 translation initiation factor IF-2B subunit alpha; Validated
Probab=58.93 E-value=63 Score=27.02 Aligned_cols=49 Identities=16% Similarity=0.101 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHcCCCCCCCeEEEeeC--CCchHHHHHHHHHHCCCcEEEEeCCC
Q 028618 51 RIGYSMISDAEAKGLITPGESVLIEPT--SGNTGIGLAFMAAAKQYRLIITMPAS 103 (206)
Q Consensus 51 R~a~~~~~~a~~~g~~~~~~~~vv~aS--sGN~g~alA~~a~~~g~~~~ivvp~~ 103 (206)
+.+...+..|.++|+. -.++..- -.+.|..+|+.-+..|++++++....
T Consensus 120 ~tv~~~l~~A~~~gk~----~~V~v~EsrP~~qG~~la~eL~~~GI~vtlI~Dsa 170 (275)
T PRK08335 120 SAVLEILKTAKRKGKR----FKVILTESAPDYEGLALANELEFLGIEFEVITDAQ 170 (275)
T ss_pred HHHHHHHHHHHHcCCc----eEEEEecCCCchhHHHHHHHHHHCCCCEEEEeccH
Confidence 4566666666666642 1233332 25667777777777777777665543
No 437
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=58.93 E-value=25 Score=25.83 Aligned_cols=35 Identities=26% Similarity=0.350 Sum_probs=23.0
Q ss_pred CCCCCeEEEeeCCCchHHH--HHHHHHHCCCcEEEEe
Q 028618 66 ITPGESVLIEPTSGNTGIG--LAFMAAAKQYRLIITM 100 (206)
Q Consensus 66 ~~~~~~~vv~aSsGN~g~a--lA~~a~~~g~~~~ivv 100 (206)
.+||+.-|+.++|||+..- .+..|+..|++++.+.
T Consensus 101 ~~~gDvli~iS~SG~s~~vi~a~~~Ak~~G~~vIalT 137 (138)
T PF13580_consen 101 IRPGDVLIVISNSGNSPNVIEAAEEAKERGMKVIALT 137 (138)
T ss_dssp --TT-EEEEEESSS-SHHHHHHHHHHHHTT-EEEEEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEe
Confidence 4566677788888987654 5677899999998864
No 438
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=58.77 E-value=85 Score=29.97 Aligned_cols=97 Identities=19% Similarity=0.117 Sum_probs=0.0
Q ss_pred CeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEEE-eCCCCChHHHHHHHHHHHHhCCCeEEc
Q 028618 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL-TDPAKGMKGAVQKAEEILAKTPNAYML 148 (206)
Q Consensus 70 ~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~ 148 (206)
...|+.-.+|-.|.+.|..+++.|.++++|=+... .|..+.. ++.-....+....-.+..++.+-.+..
T Consensus 431 ~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~----------~GG~l~~gip~~rlp~~~~~~~~~~l~~~gv~~~~ 500 (752)
T PRK12778 431 GKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHE----------IGGVLKYGIPEFRLPKKIVDVEIENLKKLGVKFET 500 (752)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCC----------CCCeeeecCCCCCCCHHHHHHHHHHHHHCCCEEEC
Q ss_pred CCCCCCccHHHHHHhHHHHHHhhhCCCCCEEEEccCcc
Q 028618 149 QQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTG 186 (206)
Q Consensus 149 ~~~~~~~~~~~g~~t~~~Ei~~q~~~~~d~vv~~vG~G 186 (206)
+. ..+......++.++- +|+||+++|++
T Consensus 501 ~~-------~v~~~v~~~~l~~~~---ydavvlAtGa~ 528 (752)
T PRK12778 501 DV-------IVGKTITIEELEEEG---FKGIFIASGAG 528 (752)
T ss_pred CC-------EECCcCCHHHHhhcC---CCEEEEeCCCC
No 439
>cd06450 DOPA_deC_like DOPA decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.
Probab=58.44 E-value=67 Score=26.83 Aligned_cols=53 Identities=15% Similarity=0.120 Sum_probs=32.6
Q ss_pred EEeeCCCchHHHHHHHHHHC-------------CCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCC
Q 028618 73 LIEPTSGNTGIGLAFMAAAK-------------QYRLIITMPASMSLERRIILRAFGAELVLTDPA 125 (206)
Q Consensus 73 vv~aSsGN~g~alA~~a~~~-------------g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~ 125 (206)
++..++|..+..+|..+... +-+.+++++..........++.+|++++.++.+
T Consensus 60 ~~~t~ggt~a~~~al~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~h~~~~~~~~~~g~~~~~v~~~ 125 (345)
T cd06450 60 GVFTSGGSESNLLALLAARDRARKRLKAGGGRGIDKLVIVCSDQAHVSVEKAAAYLDVKVRLVPVD 125 (345)
T ss_pred EEEeCChhHHHHHHHHHHHHHhhhhhhcccccccCCeEEEEcCcchhHHHHHHHHHhcCeEEeeeC
Confidence 45566777776666665421 124567777665555555666678888887643
No 440
>PRK05166 histidinol-phosphate aminotransferase; Provisional
Probab=58.42 E-value=63 Score=27.63 Aligned_cols=53 Identities=9% Similarity=-0.107 Sum_probs=30.1
Q ss_pred EEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCC
Q 028618 72 VLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPA 125 (206)
Q Consensus 72 ~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~ 125 (206)
.|+..+++..+..++..+- .+=.-.|+++.-.-..-...++.+|++++.++.+
T Consensus 90 ~i~~t~G~~~~l~~~~~~~-~~~gd~vli~~P~y~~~~~~~~~~g~~~~~v~~~ 142 (371)
T PRK05166 90 RIILGNGSEDLIAVICRAV-LRPGDRVVTLYPSFPLHEDYPTMMGARVERVTVT 142 (371)
T ss_pred HEEEcCCHHHHHHHHHHHh-cCCCCEEEEcCCChHHHHHHHHHcCCeEEEeecC
Confidence 4555566666655544432 1212234444433344456678899999998764
No 441
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=58.36 E-value=18 Score=26.75 Aligned_cols=32 Identities=25% Similarity=0.314 Sum_probs=26.4
Q ss_pred EEeeCCCchHHHHHHHHHHCCCcEEEEeCCCC
Q 028618 73 LIEPTSGNTGIGLAFMAAAKQYRLIITMPASM 104 (206)
Q Consensus 73 vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~ 104 (206)
++...+|.-+.+++..++.+|++++++-|...
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e 32 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRPE 32 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-CC
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCcc
Confidence 35678899999999999999999999988743
No 442
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=58.32 E-value=36 Score=26.26 Aligned_cols=31 Identities=19% Similarity=0.276 Sum_probs=24.7
Q ss_pred EEeeCCCchHHHHHHHHHHCCCcEEEEeCCC
Q 028618 73 LIEPTSGNTGIGLAFMAAAKQYRLIITMPAS 103 (206)
Q Consensus 73 vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~ 103 (206)
|..-.+|..|.++|..+...|++++++-+..
T Consensus 2 V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~ 32 (180)
T PF02737_consen 2 VAVIGAGTMGRGIAALFARAGYEVTLYDRSP 32 (180)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEE-SSH
T ss_pred EEEEcCCHHHHHHHHHHHhCCCcEEEEECCh
Confidence 3445679999999999999999999997653
No 443
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=58.31 E-value=84 Score=25.21 Aligned_cols=51 Identities=25% Similarity=0.235 Sum_probs=35.4
Q ss_pred HcCCCCCCCeEEEeeCCCchHHHHHHHHHHCCCc-EEEEeCCCCCHHHHHHHHHcC
Q 028618 62 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYR-LIITMPASMSLERRIILRAFG 116 (206)
Q Consensus 62 ~~g~~~~~~~~vv~aSsGN~g~alA~~a~~~g~~-~~ivvp~~~~~~~~~~~~~~G 116 (206)
....+.+++..+|. ..|..|.++...|+.+|.+ ++++ ..++.+.+.++.+|
T Consensus 91 ~~~~~~~g~~vlI~-g~g~vg~~~i~~a~~~g~~~vi~~---~~~~~~~~~~~~~g 142 (277)
T cd08255 91 RDAEPRLGERVAVV-GLGLVGLLAAQLAKAAGAREVVGV---DPDAARRELAEALG 142 (277)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCcEEEE---CCCHHHHHHHHHcC
Confidence 34556777666666 4688999999999999998 5444 22445555666666
No 444
>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=58.20 E-value=95 Score=24.80 Aligned_cols=56 Identities=13% Similarity=0.081 Sum_probs=36.7
Q ss_pred CeEEEeeCC--CchHHHHHHHHHHCCCcEEEEeCC----CC----CH----HHHHHHHHcCCEEEEeCCC
Q 028618 70 ESVLIEPTS--GNTGIGLAFMAAAKQYRLIITMPA----SM----SL----ERRIILRAFGAELVLTDPA 125 (206)
Q Consensus 70 ~~~vv~aSs--GN~g~alA~~a~~~g~~~~ivvp~----~~----~~----~~~~~~~~~Ga~v~~~~~~ 125 (206)
+..+|+..+ +.-|.++|......|.++++.... .. .. ...+.++..|.++..+..|
T Consensus 7 k~vlVtGas~~~giG~~~a~~l~~~G~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~D 76 (256)
T PRK12859 7 KVAVVTGVSRLDGIGAAICKELAEAGADIFFTYWTAYDKEMPWGVDQDEQIQLQEELLKNGVKVSSMELD 76 (256)
T ss_pred cEEEEECCCCCCChHHHHHHHHHHCCCeEEEEecccccccccccccHHHHHHHHHHHHhcCCeEEEEEcC
Confidence 356777766 489999999999999987775311 10 11 2234456778888766544
No 445
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=58.13 E-value=97 Score=30.94 Aligned_cols=32 Identities=9% Similarity=0.126 Sum_probs=28.3
Q ss_pred eEEEeeCCCchHHHHHHHHHHCCCcEEEEeCC
Q 028618 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPA 102 (206)
Q Consensus 71 ~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~ 102 (206)
..|+.-.+|..|++.|+..++.|.++++|=+.
T Consensus 538 kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~ 569 (1012)
T TIGR03315 538 HKVAVIGAGPAGLSAGYFLARAGHPVTVFEKK 569 (1012)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCeEEEEecc
Confidence 46888999999999999999999999998544
No 446
>cd08272 MDR6 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=58.10 E-value=1e+02 Score=25.06 Aligned_cols=56 Identities=25% Similarity=0.413 Sum_probs=39.9
Q ss_pred HcCCCCCCCeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 028618 62 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 121 (206)
Q Consensus 62 ~~g~~~~~~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~ 121 (206)
+.+.+.+++..+|...+|..|.+++..++.+|+++++..+. .+.+.++.+|++-++
T Consensus 138 ~~~~~~~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~----~~~~~~~~~g~~~~~ 193 (326)
T cd08272 138 DRAAVQAGQTVLIHGGAGGVGHVAVQLAKAAGARVYATASS----EKAAFARSLGADPII 193 (326)
T ss_pred HhcCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEEEEech----HHHHHHHHcCCCEEE
Confidence 45666777677777678999999999999999987665432 445555667765433
No 447
>PRK07201 short chain dehydrogenase; Provisional
Probab=57.72 E-value=57 Score=30.17 Aligned_cols=56 Identities=20% Similarity=0.097 Sum_probs=38.4
Q ss_pred CeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCC-HHHHHHHHHcCCEEEEeCCC
Q 028618 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMS-LERRIILRAFGAELVLTDPA 125 (206)
Q Consensus 70 ~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~-~~~~~~~~~~Ga~v~~~~~~ 125 (206)
+..+|+..+|..|.++|......|.+++++...... ....+.++..|.++..+..|
T Consensus 372 k~vlItGas~giG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D 428 (657)
T PRK07201 372 KVVLITGASSGIGRATAIKVAEAGATVFLVARNGEALDELVAEIRAKGGTAHAYTCD 428 (657)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCcEEEEEec
Confidence 467888889999999999888899988777654321 12233445567777665544
No 448
>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional
Probab=57.60 E-value=88 Score=25.20 Aligned_cols=31 Identities=19% Similarity=0.241 Sum_probs=23.5
Q ss_pred CeEEEeeC--CCchHHHHHHHHHHCCCcEEEEe
Q 028618 70 ESVLIEPT--SGNTGIGLAFMAAAKQYRLIITM 100 (206)
Q Consensus 70 ~~~vv~aS--sGN~g~alA~~a~~~g~~~~ivv 100 (206)
+..+|+.. ++--|.++|......|.++++..
T Consensus 7 k~~lITGa~~~~GIG~a~a~~l~~~G~~v~~~~ 39 (261)
T PRK08690 7 KKILITGMISERSIAYGIAKACREQGAELAFTY 39 (261)
T ss_pred cEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEc
Confidence 35677773 55788999998889999887754
No 449
>PRK09375 quinolinate synthetase; Provisional
Probab=57.54 E-value=1.1e+02 Score=26.29 Aligned_cols=115 Identities=20% Similarity=0.152 Sum_probs=66.0
Q ss_pred HHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHH--HHHHHHHHHHhCCCeEEcCCCCCCccHHH-
Q 028618 83 IGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKG--AVQKAEEILAKTPNAYMLQQFENPANPKI- 159 (206)
Q Consensus 83 ~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~~~- 159 (206)
.+++..++.-.=+.++|.|..--...... .-+.+|+..++....-+ ..+..+++.+++|+...+-.-+.+.-...
T Consensus 146 nAl~iv~~~~~~~~IlF~PD~~Lg~~v~~--l~~k~vilw~G~C~vH~~~~~e~i~~~r~~~Pda~Vv~HPEc~~eV~a~ 223 (319)
T PRK09375 146 NAVKIVEALPQGKKILFLPDQHLGRYVAK--QTGADIILWPGHCIVHEEFTAEDLERLRAEYPDAKVLVHPECPPEVVAL 223 (319)
T ss_pred HHHHHHhccCCCCeEEEeCchHHHHHHHH--cCCCEEEccCCcchhccCcCHHHHHHHHHHCcCCeEEEecCCCHHHHHh
Confidence 45555665545678999999644433332 27889888775442222 14445667777888765422233222111
Q ss_pred ----HHHhHHHHHHhhhCCCCCEEEEccCcchHHHHHHHHHHhcCCCCeEC
Q 028618 160 ----HYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKVR 206 (206)
Q Consensus 160 ----g~~t~~~Ei~~q~~~~~d~vv~~vG~Gg~~aGi~~~~k~~~p~~~vi 206 (206)
|-..-..++.++... -.++| ||=.|+...++..+|+.++|
T Consensus 224 AD~vgSTs~~i~~v~~~~~-~~~ii------gTE~~L~~~l~~~~P~K~fi 267 (319)
T PRK09375 224 ADFVGSTSQIIKAAKASPA-KKFIV------GTEIGIVHRLQKANPDKEFI 267 (319)
T ss_pred cCEEecHHHHHHHHHhCCC-CeEEE------EccHHHHHHHHHHCCCCEEE
Confidence 334445566666532 23444 24557888888888887664
No 450
>PRK05599 hypothetical protein; Provisional
Probab=57.42 E-value=97 Score=24.66 Aligned_cols=30 Identities=13% Similarity=0.152 Sum_probs=22.1
Q ss_pred eEEEeeCCCchHHHHHHHHHHCCCcEEEEeC
Q 028618 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMP 101 (206)
Q Consensus 71 ~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp 101 (206)
..+|+..++.-|.++|....+ |.++++.-.
T Consensus 2 ~vlItGas~GIG~aia~~l~~-g~~Vil~~r 31 (246)
T PRK05599 2 SILILGGTSDIAGEIATLLCH-GEDVVLAAR 31 (246)
T ss_pred eEEEEeCccHHHHHHHHHHhC-CCEEEEEeC
Confidence 357888888889998887764 877666644
No 451
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=57.33 E-value=85 Score=23.96 Aligned_cols=53 Identities=11% Similarity=0.003 Sum_probs=28.1
Q ss_pred EEeeCCCchHHHHHHHHHHC-CCcEEEEeCCC----CCHHHHHHHHHcCCEEEEeCCC
Q 028618 73 LIEPTSGNTGIGLAFMAAAK-QYRLIITMPAS----MSLERRIILRAFGAELVLTDPA 125 (206)
Q Consensus 73 vv~aSsGN~g~alA~~a~~~-g~~~~ivvp~~----~~~~~~~~~~~~Ga~v~~~~~~ 125 (206)
++.++.+....+.+...+++ |++++.+.+.. ..+.-++.++..++++++++-.
T Consensus 53 llG~~~~~~~~~~~~l~~~yP~l~ivg~~~g~f~~~~~~~i~~~I~~~~pdiv~vglG 110 (172)
T PF03808_consen 53 LLGGSEEVLEKAAANLRRRYPGLRIVGYHHGYFDEEEEEAIINRINASGPDIVFVGLG 110 (172)
T ss_pred EEeCCHHHHHHHHHHHHHHCCCeEEEEecCCCCChhhHHHHHHHHHHcCCCEEEEECC
Confidence 33334455555555555555 66666555431 2334455566677777776644
No 452
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=57.19 E-value=48 Score=32.92 Aligned_cols=31 Identities=10% Similarity=0.112 Sum_probs=28.2
Q ss_pred eEEEeeCCCchHHHHHHHHHHCCCcEEEEeC
Q 028618 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMP 101 (206)
Q Consensus 71 ~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp 101 (206)
+.|+.-.+|-.|.++|+...+.|.++++|=.
T Consensus 384 KKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~ 414 (1028)
T PRK06567 384 YNILVTGLGPAGFSLSYYLLRSGHNVTAIDG 414 (1028)
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCeEEEEcc
Confidence 5788889999999999999999999999954
No 453
>PRK07370 enoyl-(acyl carrier protein) reductase; Validated
Probab=57.09 E-value=1e+02 Score=24.78 Aligned_cols=53 Identities=15% Similarity=-0.005 Sum_probs=32.2
Q ss_pred CeEEEeeCC--CchHHHHHHHHHHCCCcEEEEeC-CC--CCHHHHHHHHHcCCEEEEe
Q 028618 70 ESVLIEPTS--GNTGIGLAFMAAAKQYRLIITMP-AS--MSLERRIILRAFGAELVLT 122 (206)
Q Consensus 70 ~~~vv~aSs--GN~g~alA~~a~~~g~~~~ivvp-~~--~~~~~~~~~~~~Ga~v~~~ 122 (206)
+..+|+..+ +--|.++|......|.++++... .. ......+.++..+.++..+
T Consensus 7 k~~lItGas~~~GIG~aia~~la~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 64 (258)
T PRK07370 7 KKALVTGIANNRSIAWGIAQQLHAAGAELGITYLPDEKGRFEKKVRELTEPLNPSLFL 64 (258)
T ss_pred cEEEEeCCCCCCchHHHHHHHHHHCCCEEEEEecCcccchHHHHHHHHHhccCcceEe
Confidence 356777754 57888888888899998876542 21 1233444554444444333
No 454
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=57.08 E-value=1e+02 Score=24.86 Aligned_cols=55 Identities=31% Similarity=0.495 Sum_probs=37.5
Q ss_pred cCCCCCCCeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEE
Q 028618 63 KGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELV 120 (206)
Q Consensus 63 ~g~~~~~~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~ 120 (206)
...+.+++..+|...+|..|.+++..++.+|.+++++... ..+.+.++.+|++.+
T Consensus 134 ~~~~~~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~---~~~~~~~~~~g~~~~ 188 (323)
T cd08241 134 RARLQPGETVLVLGAAGGVGLAAVQLAKALGARVIAAASS---EEKLALARALGADHV 188 (323)
T ss_pred hcCCCCCCEEEEEcCCchHHHHHHHHHHHhCCEEEEEeCC---HHHHHHHHHcCCcee
Confidence 4455666667777777999999999999999986555433 234455555666443
No 455
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=57.02 E-value=83 Score=26.54 Aligned_cols=34 Identities=15% Similarity=0.057 Sum_probs=29.0
Q ss_pred CeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCC
Q 028618 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPAS 103 (206)
Q Consensus 70 ~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~ 103 (206)
++.+|+..+|--|.+++......|.+++++....
T Consensus 5 k~ilItGatG~IG~~l~~~L~~~G~~V~~~~r~~ 38 (349)
T TIGR02622 5 KKVLVTGHTGFKGSWLSLWLLELGAEVYGYSLDP 38 (349)
T ss_pred CEEEEECCCChhHHHHHHHHHHCCCEEEEEeCCC
Confidence 4789999999999999999999999988776443
No 456
>PRK09147 succinyldiaminopimelate transaminase; Provisional
Probab=56.93 E-value=1.3e+02 Score=25.94 Aligned_cols=80 Identities=10% Similarity=0.029 Sum_probs=41.0
Q ss_pred CCCChhhHHHHHHHHHHHHcCC--CCCCCeEEEeeCCCchHHHHHHHHHH-C-CCcEEEEeCCCCCHHHHHHHHHcCCEE
Q 028618 44 PCSSVKDRIGYSMISDAEAKGL--ITPGESVLIEPTSGNTGIGLAFMAAA-K-QYRLIITMPASMSLERRIILRAFGAEL 119 (206)
Q Consensus 44 ptGS~K~R~a~~~~~~a~~~g~--~~~~~~~vv~aSsGN~g~alA~~a~~-~-g~~~~ivvp~~~~~~~~~~~~~~Ga~v 119 (206)
+.|.-+.|-+...... ...|. +.+. ..|+..+++..+..++..+-. - |-.-.|++|.-.-..-...++.+|+++
T Consensus 64 ~~G~~~lr~~ia~~~~-~~~g~~~~~~~-~~i~it~G~~~al~~~~~~l~~~~~~gd~vlv~~P~y~~~~~~~~~~g~~~ 141 (396)
T PRK09147 64 TAGLPALREAIAAWLE-RRYGLPALDPA-TQVLPVNGSREALFAFAQTVIDRDGPGPLVVCPNPFYQIYEGAALLAGAEP 141 (396)
T ss_pred CCCCHHHHHHHHHHHH-HHhCCCcCCcc-ceEEECCChHHHHHHHHHHHcCCCCCCCEEEEcCCCccchHHHHHhcCCEE
Confidence 3465566644332221 12242 3332 246666777777665555422 2 112234444333333355678899999
Q ss_pred EEeCCC
Q 028618 120 VLTDPA 125 (206)
Q Consensus 120 ~~~~~~ 125 (206)
+.++-+
T Consensus 142 ~~vp~~ 147 (396)
T PRK09147 142 YFLNCD 147 (396)
T ss_pred EEeccC
Confidence 999754
No 457
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=56.85 E-value=1.3e+02 Score=27.59 Aligned_cols=40 Identities=20% Similarity=0.150 Sum_probs=29.1
Q ss_pred HHHhhhC-CCCCEEEEccCcchHHHHHHHHHHhcCCCCeEC
Q 028618 167 ELWKGSG-GRIDALVSGIGTGGTITGAGKFLKEKNPNIKVR 206 (206)
Q Consensus 167 Ei~~q~~-~~~d~vv~~vG~Gg~~aGi~~~~k~~~p~~~vi 206 (206)
|++++.+ .+.|.+++.++.-..-.-+....++.+|+.+||
T Consensus 472 ~~L~~a~i~~a~~viv~~~~~~~~~~iv~~~~~~~~~~~ii 512 (558)
T PRK10669 472 EIMQLAHLDCARWLLLTIPNGYEAGEIVASAREKRPDIEII 512 (558)
T ss_pred HHHHhcCccccCEEEEEcCChHHHHHHHHHHHHHCCCCeEE
Confidence 5555543 358999999988666555666778889998875
No 458
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=56.82 E-value=1.1e+02 Score=25.22 Aligned_cols=54 Identities=24% Similarity=0.271 Sum_probs=37.6
Q ss_pred HcCCCCCCCeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCE
Q 028618 62 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAE 118 (206)
Q Consensus 62 ~~g~~~~~~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~ 118 (206)
+...+.+++..+|. .+|..|.+++..|+.+|++.++++.. +..+.+.++.+|+.
T Consensus 153 ~~~~~~~g~~vlI~-g~g~vg~~~~~la~~~G~~~v~~~~~--~~~~~~~~~~~g~~ 206 (334)
T cd08234 153 DLLGIKPGDSVLVF-GAGPIGLLLAQLLKLNGASRVTVAEP--NEEKLELAKKLGAT 206 (334)
T ss_pred HhcCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCcEEEEECC--CHHHHHHHHHhCCe
Confidence 44456666666666 46889999999999999984444332 35566667778875
No 459
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=56.82 E-value=32 Score=30.49 Aligned_cols=32 Identities=28% Similarity=0.410 Sum_probs=27.1
Q ss_pred CCCCeEEEeeCCCchHHHHHHHHHHCCCcEEEE
Q 028618 67 TPGESVLIEPTSGNTGIGLAFMAAAKQYRLIIT 99 (206)
Q Consensus 67 ~~~~~~vv~aSsGN~g~alA~~a~~~g~~~~iv 99 (206)
..| ++++....|+-|+.+|..++.+|.+++++
T Consensus 193 l~G-k~VvViG~G~IG~~vA~~ak~~Ga~ViV~ 224 (406)
T TIGR00936 193 IAG-KTVVVAGYGWCGKGIAMRARGMGARVIVT 224 (406)
T ss_pred CCc-CEEEEECCCHHHHHHHHHHhhCcCEEEEE
Confidence 344 57888999999999999999999986665
No 460
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=56.70 E-value=59 Score=29.26 Aligned_cols=96 Identities=19% Similarity=0.187 Sum_probs=56.0
Q ss_pred eEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCC-hHHHHHHHHHHHHhCCCeEEcC
Q 028618 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKG-MKGAVQKAEEILAKTPNAYMLQ 149 (206)
Q Consensus 71 ~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~-~~~~~~~a~~~~~~~~~~~~~~ 149 (206)
..|....+|..|++.|+--.+.|..+++|=.. + ..|+-+..--++.- ..+..++..+..++.+-.+.++
T Consensus 124 ~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~--~--------~~GGll~yGIP~~kl~k~i~d~~i~~l~~~Gv~~~~~ 193 (457)
T COG0493 124 KKVAVIGAGPAGLAAADDLSRAGHDVTVFERV--A--------LDGGLLLYGIPDFKLPKDILDRRLELLERSGVEFKLN 193 (457)
T ss_pred CEEEEECCCchHhhhHHHHHhCCCeEEEeCCc--C--------CCceeEEecCchhhccchHHHHHHHHHHHcCeEEEEc
Confidence 46788899999999999999999999997221 1 23443333222211 1245556666666654334433
Q ss_pred CCCCCccHHHHHHhHHHHHHhhhCCCCCEEEEccCcch
Q 028618 150 QFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGG 187 (206)
Q Consensus 150 ~~~~~~~~~~g~~t~~~Ei~~q~~~~~d~vv~~vG~Gg 187 (206)
. ..|.-....++.++ +|+|++++|++.
T Consensus 194 ~-------~vG~~it~~~L~~e----~Dav~l~~G~~~ 220 (457)
T COG0493 194 V-------RVGRDITLEELLKE----YDAVFLATGAGK 220 (457)
T ss_pred c-------eECCcCCHHHHHHh----hCEEEEeccccC
Confidence 2 12322223344444 488888888653
No 461
>TIGR03772 anch_rpt_subst anchored repeat ABC transporter, substrate-binding protein. Members of this protein family are ABC transporter permease subunits as identified by pfam00950, but additionally contain the Actinobacterial insert domain described by TIGR03769. Some homologs (lacking the insert) have been described as transporters of manganese or of chelated iron. Members of this family typically are found along with an ATP-binding cassette protein, a permease, and an LPXTG-anchored protein with two or three copies of the TIGR03769 insert that occurs just once in this protein family.
Probab=56.55 E-value=69 Score=29.05 Aligned_cols=84 Identities=13% Similarity=0.091 Sum_probs=51.6
Q ss_pred HHHHHHHHCCCcEEEEe---CCCC-CH----HHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeE---EcCCCC
Q 028618 84 GLAFMAAAKQYRLIITM---PASM-SL----ERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAY---MLQQFE 152 (206)
Q Consensus 84 alA~~a~~~g~~~~ivv---p~~~-~~----~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~ 152 (206)
++.|.++.+|++..-++ |+.. ++ .-++.++..+..+++++... ......++.++++.+-.. +.+..+
T Consensus 380 af~YLa~~YGL~~~~~~~~~~~~ePS~~~L~~Li~~IK~~~V~~IF~Epq~--~~~~~~l~~IA~e~Gv~V~~l~~d~l~ 457 (479)
T TIGR03772 380 AYSYLGQAYGLNIAGFVTPNPAVEPSLADRRRLTRTIENLKVPAVFLEPNL--AARSTTLNEIADELGVRVCAIYGDTFD 457 (479)
T ss_pred cHHHHHHHCCCeEEeeeccCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCC--CCchHHHHHHHHHcCCcEEeeecCCCC
Confidence 88999999999988765 3332 22 23556788999999998873 233445666777763222 222322
Q ss_pred CCccHHHHHHhHHHHHHhhh
Q 028618 153 NPANPKIHYETTGPELWKGS 172 (206)
Q Consensus 153 ~~~~~~~g~~t~~~Ei~~q~ 172 (206)
.. ...|..+..+.++++
T Consensus 458 ~~---~~tY~~~M~~N~~~L 474 (479)
T TIGR03772 458 DD---VTNYVDLMRFNADSL 474 (479)
T ss_pred Cc---cccHHHHHHHHHHHH
Confidence 11 124666666665554
No 462
>cd06324 PBP1_ABC_sugar_binding_like_13 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=56.52 E-value=1.1e+02 Score=25.10 Aligned_cols=38 Identities=21% Similarity=0.182 Sum_probs=25.4
Q ss_pred HHHHhHHHHHHhhhCCCCCEEEEccCcchHHHHHHHHHHhcC
Q 028618 159 IHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKEKN 200 (206)
Q Consensus 159 ~g~~t~~~Ei~~q~~~~~d~vv~~vG~Gg~~aGi~~~~k~~~ 200 (206)
.++. ...+++++- +++|+||+. +.....|+..++++.+
T Consensus 188 ~~~~-~~~~~l~~~-~~~~ai~~~--~d~~A~g~~~al~~~g 225 (305)
T cd06324 188 EAYE-QAENLLKRY-PDVRLIWAA--NDQMAFGALRAAKEAG 225 (305)
T ss_pred HHHH-HHHHHHHHC-CCccEEEEC--CchHHHHHHHHHHHcC
Confidence 3443 444555543 568998864 5566779999999876
No 463
>COG3688 Predicted RNA-binding protein containing a PIN domain [General function prediction only]
Probab=56.49 E-value=39 Score=25.97 Aligned_cols=92 Identities=11% Similarity=0.114 Sum_probs=55.8
Q ss_pred hHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHH-HHHHHHhCCCeEEcCCCCCCccH-H
Q 028618 81 TGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQK-AEEILAKTPNAYMLQQFENPANP-K 158 (206)
Q Consensus 81 ~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~-a~~~~~~~~~~~~~~~~~~~~~~-~ 158 (206)
.--++|-+...-|+++++|......+...+....++.+|++...+..-++..++ +.++-....+...+--.|...-+ +
T Consensus 36 LIe~l~~Y~s~~g~~iivVFDA~~v~g~~~~~~~~~vsvvyT~~~ETADs~IEr~~~el~~~~t~~V~VaTSD~~EQ~~I 115 (173)
T COG3688 36 LIEALAEYQSFTGYKIIVVFDAHYVPGVGREYKNHRVSVVYTKEGETADSFIERYVAELRNAATHQVIVATSDRAEQWTI 115 (173)
T ss_pred HHHHHHHhhcccCceEEEEEEccccccccccccccceEEEEecCCccHHHHHHHHHHHHhccccceEEEEeCchhhhhhh
Confidence 335788999999999999998765444555566788999999877644444333 44554343334444333332211 2
Q ss_pred HHHHh---HHHHHHhhh
Q 028618 159 IHYET---TGPELWKGS 172 (206)
Q Consensus 159 ~g~~t---~~~Ei~~q~ 172 (206)
.|++. -+.|+++++
T Consensus 116 fg~GA~r~Sarel~~ev 132 (173)
T COG3688 116 FGQGALRMSARELYQEV 132 (173)
T ss_pred hccchHHHhHHHHHHHH
Confidence 34443 356766554
No 464
>PRK05875 short chain dehydrogenase; Provisional
Probab=56.13 E-value=95 Score=24.95 Aligned_cols=33 Identities=18% Similarity=0.163 Sum_probs=27.8
Q ss_pred CeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCC
Q 028618 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPA 102 (206)
Q Consensus 70 ~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~ 102 (206)
++.+|+..+|..|.++|......|.+++++...
T Consensus 8 k~vlItGasg~IG~~la~~l~~~G~~V~~~~r~ 40 (276)
T PRK05875 8 RTYLVTGGGSGIGKGVAAGLVAAGAAVMIVGRN 40 (276)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCeEEEEeCC
Confidence 368899999999999999999999987776543
No 465
>PRK06125 short chain dehydrogenase; Provisional
Probab=56.12 E-value=81 Score=25.15 Aligned_cols=33 Identities=27% Similarity=0.210 Sum_probs=27.1
Q ss_pred CeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCC
Q 028618 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPA 102 (206)
Q Consensus 70 ~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~ 102 (206)
+..+|+..+|..|.++|......|.+++++...
T Consensus 8 k~vlItG~~~giG~~ia~~l~~~G~~V~~~~r~ 40 (259)
T PRK06125 8 KRVLITGASKGIGAAAAEAFAAEGCHLHLVARD 40 (259)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCC
Confidence 467888889999999999999999977666543
No 466
>PRK02731 histidinol-phosphate aminotransferase; Validated
Probab=56.04 E-value=64 Score=27.37 Aligned_cols=53 Identities=15% Similarity=-0.057 Sum_probs=28.8
Q ss_pred EEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCC
Q 028618 72 VLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPA 125 (206)
Q Consensus 72 ~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~ 125 (206)
.|+..+++..+..+...+- .+-.-.|+++.-.-..-....+.+|++++.++.+
T Consensus 86 ~i~~t~G~~~~l~~~~~~l-~~~gd~vl~~~p~y~~~~~~~~~~g~~~~~~~~~ 138 (367)
T PRK02731 86 RIILGNGSDEILELLARAY-LGPGDEVIYSEHGFAVYPIAAQAVGAKPVEVPAK 138 (367)
T ss_pred HEEEcCCHHHHHHHHHHHh-cCCCCEEEEecCCHHHHHHHHHHcCCeEEEeccc
Confidence 3555555555554433332 2222345555433333344567899999998754
No 467
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=55.88 E-value=57 Score=29.16 Aligned_cols=76 Identities=18% Similarity=0.062 Sum_probs=49.3
Q ss_pred CChhhHHHHHHHHHH-HHcCC---CC---CCCeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCC--------------
Q 028618 46 SSVKDRIGYSMISDA-EAKGL---IT---PGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASM-------------- 104 (206)
Q Consensus 46 GS~K~R~a~~~~~~a-~~~g~---~~---~~~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~-------------- 104 (206)
++...|.....+.+. .+.+. .. +....++.-.+|..|.+.|..+++.|.++++|-....
T Consensus 112 ~~v~i~~l~r~~~~~~~~~~~~~~~~~~~~~~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~~gip~~~~ 191 (471)
T PRK12810 112 GPVTIKNIERYIIDKAFEEGWVKPDPPVKRTGKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLRYGIPDFKL 191 (471)
T ss_pred CCccHHHHHHHHHHHHHHcCCCCCCCCcCCCCCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceeeecCCcccC
Confidence 456666655555433 22221 10 1124688888999999999999999999998864321
Q ss_pred C----HHHHHHHHHcCCEEEE
Q 028618 105 S----LERRIILRAFGAELVL 121 (206)
Q Consensus 105 ~----~~~~~~~~~~Ga~v~~ 121 (206)
+ ....+.++.+|.+++.
T Consensus 192 ~~~~~~~~~~~~~~~gv~~~~ 212 (471)
T PRK12810 192 EKEVIDRRIELMEAEGIEFRT 212 (471)
T ss_pred CHHHHHHHHHHHHhCCcEEEe
Confidence 1 2235667888988764
No 468
>PF11814 DUF3335: Peptidase_C39 like family; InterPro: IPR021770 This family of proteins are functionally uncharacterised. This family is only found in bacteria. This presumed domain is typically between 226 to 230 amino acids in length.
Probab=55.81 E-value=87 Score=25.07 Aligned_cols=27 Identities=22% Similarity=0.369 Sum_probs=22.0
Q ss_pred CCchHHHHHHHHHHCCCcEEEEeCCCC
Q 028618 78 SGNTGIGLAFMAAAKQYRLIITMPASM 104 (206)
Q Consensus 78 sGN~g~alA~~a~~~g~~~~ivvp~~~ 104 (206)
+|-+-.+||.+|++.|+++.+++....
T Consensus 52 GGC~P~GLAlAA~rrG~~vev~~~~~~ 78 (207)
T PF11814_consen 52 GGCGPFGLALAAARRGFKVEVWVSTDG 78 (207)
T ss_pred CCcChHHHHHHHHHcCCceEEEECCCC
Confidence 366778888889999999999997643
No 469
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=55.71 E-value=1.3e+02 Score=25.53 Aligned_cols=55 Identities=24% Similarity=0.318 Sum_probs=36.6
Q ss_pred HcCCCCCCCeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEE
Q 028618 62 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAEL 119 (206)
Q Consensus 62 ~~g~~~~~~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v 119 (206)
+...+.+++..+|. ..|..|.+++..|+.+|.+.++++.. +..+.+.++.+|++-
T Consensus 176 ~~~~~~~g~~vLI~-g~g~vG~a~i~lak~~G~~~Vi~~~~--~~~~~~~~~~~g~~~ 230 (363)
T cd08279 176 NTARVRPGDTVAVI-GCGGVGLNAIQGARIAGASRIIAVDP--VPEKLELARRFGATH 230 (363)
T ss_pred hccCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCcEEEEcC--CHHHHHHHHHhCCeE
Confidence 33445666666776 56899999999999999873333322 344555666777643
No 470
>PRK07324 transaminase; Validated
Probab=55.37 E-value=58 Score=27.99 Aligned_cols=83 Identities=11% Similarity=0.071 Sum_probs=42.5
Q ss_pred EEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCC--ChHHHHHHHHHHHHhCCCeEEcC
Q 028618 72 VLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAK--GMKGAVQKAEEILAKTPNAYMLQ 149 (206)
Q Consensus 72 ~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~--~~~~~~~~a~~~~~~~~~~~~~~ 149 (206)
.|+..+++..|..++..+- .+-.-.|+++.-.-..-...++.+|++++.++.+. ++.-..+...+....+...++++
T Consensus 82 ~vi~t~G~~~al~~~~~~l-~~~gd~Vl~~~P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~d~~~l~~~~~~~~kli~i~ 160 (373)
T PRK07324 82 NILQTNGATGANFLVLYAL-VEPGDHVISVYPTYQQLYDIPESLGAEVDYWQLKEENGWLPDLDELRRLVRPNTKLICIN 160 (373)
T ss_pred hEEEcCChHHHHHHHHHHh-CCCCCEEEEcCCCchhHHHHHHHcCCEEEEEecccccCCCCCHHHHHHhCCCCCcEEEEe
Confidence 4566666677776666553 22222344444333334566788999999987542 11101122222223334566665
Q ss_pred CCCCCc
Q 028618 150 QFENPA 155 (206)
Q Consensus 150 ~~~~~~ 155 (206)
...||.
T Consensus 161 ~p~NPt 166 (373)
T PRK07324 161 NANNPT 166 (373)
T ss_pred CCCCCC
Confidence 445543
No 471
>COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism]
Probab=55.17 E-value=73 Score=27.88 Aligned_cols=33 Identities=21% Similarity=0.183 Sum_probs=28.7
Q ss_pred EEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCC
Q 028618 72 VLIEPTSGNTGIGLAFMAAAKQYRLIITMPASM 104 (206)
Q Consensus 72 ~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~ 104 (206)
+|-.-.+|..|+-++.+|+.+|++++++-|...
T Consensus 3 tvgIlGGGQLgrMm~~aa~~lG~~v~vLdp~~~ 35 (375)
T COG0026 3 TVGILGGGQLGRMMALAAARLGIKVIVLDPDAD 35 (375)
T ss_pred eEEEEcCcHHHHHHHHHHHhcCCEEEEecCCCC
Confidence 455668899999999999999999999998753
No 472
>PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional
Probab=55.03 E-value=1.4e+02 Score=26.48 Aligned_cols=54 Identities=19% Similarity=0.023 Sum_probs=38.1
Q ss_pred EEEeeCCCchHHHHHHHHHH------CCC--cEEEEeCCCCCHHHHHHHHHcCCEEEEeCCC
Q 028618 72 VLIEPTSGNTGIGLAFMAAA------KQY--RLIITMPASMSLERRIILRAFGAELVLTDPA 125 (206)
Q Consensus 72 ~vv~aSsGN~g~alA~~a~~------~g~--~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~ 125 (206)
.++..++|..+..+|+.+.. .++ .-.|++|..+-......+...|+++++++-+
T Consensus 80 ~~v~~~sGt~al~~aL~al~~~~~~~~~~~pGd~VIv~~~t~~a~~~~v~~~G~~pv~vdvd 141 (438)
T PRK15407 80 YALLVNSGSSANLLAFSALTSPKLGDRALKPGDEVITVAAGFPTTVNPIIQNGLVPVFVDVE 141 (438)
T ss_pred eEEEECCHHHHHHHHHHHHhhccccccCCCCCCEEEECCCCcHHHHHHHHHcCCEEEEEecC
Confidence 46667778888777776541 132 2457777777677777888899999998754
No 473
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=55.01 E-value=1.1e+02 Score=24.72 Aligned_cols=32 Identities=16% Similarity=0.233 Sum_probs=23.1
Q ss_pred CeEEEeeCCC--chHHHHHHHHHHCCCcEEEEeC
Q 028618 70 ESVLIEPTSG--NTGIGLAFMAAAKQYRLIITMP 101 (206)
Q Consensus 70 ~~~vv~aSsG--N~g~alA~~a~~~g~~~~ivvp 101 (206)
+..+|+..++ .-|.++|......|.++++.-.
T Consensus 7 k~~lITGas~~~GIG~aia~~la~~G~~vil~~r 40 (262)
T PRK07984 7 KRILVTGVASKLSIAYGIAQAMHREGAELAFTYQ 40 (262)
T ss_pred CEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEec
Confidence 3566777654 5778888888889988766543
No 474
>PF00391 PEP-utilizers: PEP-utilising enzyme, mobile domain; InterPro: IPR008279 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]. All these enzymes share the same catalytic mechanism: they bind PEP and transfer the phosphoryl group from it to a histidine residue. This domain is a "swivelling" beta/beta/alpha domain which is thought to be mobile in all proteins known to contain it []. It is often found associated with the pyruvate phosphate dikinase, PEP/pyruvate-binding domain (IPR002192 from INTERPRO) at its N terminus.; GO: 0016772 transferase activity, transferring phosphorus-containing groups, 0016310 phosphorylation; PDB: 2X0S_A 2OLS_A 2HRO_A 2E28_A 2WQD_A 3T05_D 3T0T_D 3T07_B 2DIK_A 2FM4_A ....
Probab=54.96 E-value=20 Score=23.71 Aligned_cols=31 Identities=16% Similarity=0.178 Sum_probs=23.9
Q ss_pred eEEEeeCCCchHHHHHHHHHHCCCcEEEEeCC
Q 028618 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPA 102 (206)
Q Consensus 71 ~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~ 102 (206)
..+|+..+|-+.. .|..|+.+|+|+++=++.
T Consensus 32 ~Giv~~~Gg~~SH-~aIlAr~~giP~ivg~~~ 62 (80)
T PF00391_consen 32 AGIVTEEGGPTSH-AAILARELGIPAIVGVGD 62 (80)
T ss_dssp SEEEESSSSTTSH-HHHHHHHTT-EEEESTTT
T ss_pred EEEEEEcCCccch-HHHHHHHcCCCEEEeecc
Confidence 5788877777754 499999999999987764
No 475
>PRK04284 ornithine carbamoyltransferase; Provisional
Probab=54.95 E-value=1.3e+02 Score=25.92 Aligned_cols=45 Identities=20% Similarity=0.154 Sum_probs=32.2
Q ss_pred CchHHHHHHHHHHCCCcEEEEeCCCC--CHHHHHH----HHHcCCEEEEeC
Q 028618 79 GNTGIGLAFMAAAKQYRLIITMPASM--SLERRII----LRAFGAELVLTD 123 (206)
Q Consensus 79 GN~g~alA~~a~~~g~~~~ivvp~~~--~~~~~~~----~~~~Ga~v~~~~ 123 (206)
.|.+++++.+++.+|++++++.|+.. +...+.. .+..|+++....
T Consensus 166 ~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 216 (332)
T PRK04284 166 NNVANALMQGAAIMGMDFHLVCPKELNPDDELLNKCKEIAAETGGKITITD 216 (332)
T ss_pred cchHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEc
Confidence 58999999999999999999999863 3333322 235676665543
No 476
>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional
Probab=54.71 E-value=88 Score=25.46 Aligned_cols=31 Identities=23% Similarity=0.150 Sum_probs=22.8
Q ss_pred CeEEEeeCC--CchHHHHHHHHHHCCCcEEEEe
Q 028618 70 ESVLIEPTS--GNTGIGLAFMAAAKQYRLIITM 100 (206)
Q Consensus 70 ~~~vv~aSs--GN~g~alA~~a~~~g~~~~ivv 100 (206)
+..+|+..+ +--|.++|......|.++++.-
T Consensus 11 k~~lItGas~~~GIG~aia~~la~~G~~V~l~~ 43 (272)
T PRK08159 11 KRGLILGVANNRSIAWGIAKACRAAGAELAFTY 43 (272)
T ss_pred CEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEc
Confidence 356777664 5688899888888898776553
No 477
>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional
Probab=54.37 E-value=1.1e+02 Score=24.86 Aligned_cols=9 Identities=22% Similarity=0.272 Sum_probs=4.4
Q ss_pred HHHHHHcCC
Q 028618 57 ISDAEAKGL 65 (206)
Q Consensus 57 ~~~a~~~g~ 65 (206)
.....++|.
T Consensus 29 a~~la~~G~ 37 (272)
T PRK08159 29 AKACRAAGA 37 (272)
T ss_pred HHHHHHCCC
Confidence 344445664
No 478
>PRK06436 glycerate dehydrogenase; Provisional
Probab=54.35 E-value=70 Score=27.02 Aligned_cols=92 Identities=12% Similarity=0.096 Sum_probs=55.3
Q ss_pred eEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEcCC
Q 028618 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQ 150 (206)
Q Consensus 71 ~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 150 (206)
+++-.-.-|+-|+++|..++.+|++++++-|.... .|..... .+ ..++.++. +...+.-
T Consensus 123 ktvgIiG~G~IG~~vA~~l~afG~~V~~~~r~~~~---------~~~~~~~--~~---------l~ell~~a-Div~~~l 181 (303)
T PRK06436 123 KSLGILGYGGIGRRVALLAKAFGMNIYAYTRSYVN---------DGISSIY--ME---------PEDIMKKS-DFVLISL 181 (303)
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCcc---------cCccccc--CC---------HHHHHhhC-CEEEECC
Confidence 56667788999999999999999999888654211 1221100 01 12333333 4555433
Q ss_pred CCCCccHHHHHHhHHHHHHhhhCCCCCEEEEccCcchHH
Q 028618 151 FENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTI 189 (206)
Q Consensus 151 ~~~~~~~~~g~~t~~~Ei~~q~~~~~d~vv~~vG~Gg~~ 189 (206)
..++.+ +..+..+.++++ ++..+++-+|.|+.+
T Consensus 182 p~t~~T----~~li~~~~l~~m--k~ga~lIN~sRG~~v 214 (303)
T PRK06436 182 PLTDET----RGMINSKMLSLF--RKGLAIINVARADVV 214 (303)
T ss_pred CCCchh----hcCcCHHHHhcC--CCCeEEEECCCcccc
Confidence 333332 233456667776 357888888888765
No 479
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=54.25 E-value=55 Score=29.31 Aligned_cols=51 Identities=22% Similarity=0.246 Sum_probs=39.1
Q ss_pred eEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCC---------C---------HHHHHHHHHcCCEEEE
Q 028618 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASM---------S---------LERRIILRAFGAELVL 121 (206)
Q Consensus 71 ~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~---------~---------~~~~~~~~~~Ga~v~~ 121 (206)
..++.-.+|-.|.+.|..+++.|.+++++-.... + ....+.++.+|.+++.
T Consensus 142 ~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~~gip~~~~~~~~~~~~~~~~~~~Gv~~~~ 210 (467)
T TIGR01318 142 KRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLTFGIPSFKLDKAVLSRRREIFTAMGIEFHL 210 (467)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceeeecCccccCCHHHHHHHHHHHHHCCCEEEC
Confidence 5688899999999999999999999888843221 1 2345677889988764
No 480
>cd08550 GlyDH-like Glycerol_dehydrogenase-like. Families of proteins related to glycerol dehydrogenases. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site. Some subfamilies have not been characterized till now.
Probab=54.15 E-value=77 Score=27.12 Aligned_cols=8 Identities=38% Similarity=0.916 Sum_probs=3.9
Q ss_pred EEccCcch
Q 028618 180 VSGIGTGG 187 (206)
Q Consensus 180 v~~vG~Gg 187 (206)
|+++|+|+
T Consensus 81 IIavGGGs 88 (349)
T cd08550 81 IIGVGGGK 88 (349)
T ss_pred EEEecCcH
Confidence 34555544
No 481
>PRK08267 short chain dehydrogenase; Provisional
Probab=54.13 E-value=82 Score=25.08 Aligned_cols=32 Identities=22% Similarity=0.234 Sum_probs=26.9
Q ss_pred eEEEeeCCCchHHHHHHHHHHCCCcEEEEeCC
Q 028618 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPA 102 (206)
Q Consensus 71 ~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~ 102 (206)
..+|+..+|..|.+++......|.+++++.+.
T Consensus 3 ~vlItGasg~iG~~la~~l~~~G~~V~~~~r~ 34 (260)
T PRK08267 3 SIFITGAASGIGRATALLFAAEGWRVGAYDIN 34 (260)
T ss_pred EEEEeCCCchHHHHHHHHHHHCCCeEEEEeCC
Confidence 56888889999999999999999988777543
No 482
>PLN02918 pyridoxine (pyridoxamine) 5'-phosphate oxidase
Probab=54.13 E-value=1.4e+02 Score=27.60 Aligned_cols=49 Identities=18% Similarity=0.177 Sum_probs=31.4
Q ss_pred eEEEeeCCCchH---HHHHHHHHHCCCcEEEEeCCCCCHH----HHHHHHHcCCEE
Q 028618 71 SVLIEPTSGNTG---IGLAFMAAAKQYRLIITMPASMSLE----RRIILRAFGAEL 119 (206)
Q Consensus 71 ~~vv~aSsGN~g---~alA~~a~~~g~~~~ivvp~~~~~~----~~~~~~~~Ga~v 119 (206)
+.+|.+..||-| ..+|......|.++.|++|...... ..++++.+|..+
T Consensus 137 ~VlVlcGpGNNGGDGLVaAR~L~~~G~~V~V~~~~~~~~~~~~~~~~~~~~~gi~~ 192 (544)
T PLN02918 137 RVLAICGPGNNGGDGLVAARHLHHFGYKPFVCYPKRTAKPLYTGLVTQLESLSVPF 192 (544)
T ss_pred EEEEEECCCcCHHHHHHHHHHHHHCCCceEEEEcCCCCcHHHHHHHHHHHHcCCCe
Confidence 456666666643 4555555667999999998753322 245567777654
No 483
>PRK12829 short chain dehydrogenase; Provisional
Probab=54.08 E-value=1.1e+02 Score=24.25 Aligned_cols=33 Identities=18% Similarity=0.113 Sum_probs=28.0
Q ss_pred CeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCC
Q 028618 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPA 102 (206)
Q Consensus 70 ~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~ 102 (206)
++.+|+..+|..|.+++......|.+++++...
T Consensus 12 ~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~r~ 44 (264)
T PRK12829 12 LRVLVTGGASGIGRAIAEAFAEAGARVHVCDVS 44 (264)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCC
Confidence 478999999999999999999999987766643
No 484
>COG0836 {ManC} Mannose-1-phosphate guanylyltransferase [Cell envelope biogenesis, outer membrane]
Probab=54.02 E-value=48 Score=28.42 Aligned_cols=55 Identities=24% Similarity=0.381 Sum_probs=35.4
Q ss_pred EEEeeCCCchHHHHHHHHHH----CCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhC
Q 028618 72 VLIEPTSGNTGIGLAFMAAA----KQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKT 142 (206)
Q Consensus 72 ~vv~aSsGN~g~alA~~a~~----~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~ 142 (206)
.+++..+=|++-|+|++|.. .|=.+++|+|.+-- +....-|.++++.|.+++++.
T Consensus 80 illEP~gRnTApAIA~aa~~~~~~~~d~~~lVlpsDH~----------------I~d~~af~~av~~A~~~A~~g 138 (333)
T COG0836 80 IILEPEGRNTAPAIALAALSATAEGGDALVLVLPSDHV----------------IADEEAFLNAVKKAEKAAEEG 138 (333)
T ss_pred eEeccCCCCcHHHHHHHHHHHHHhCCCcEEEEecCcce----------------eccHHHHHHHHHHHHHHHHcC
Confidence 78888999999999988833 34335555665421 111111567788888888874
No 485
>PRK07178 pyruvate carboxylase subunit A; Validated
Probab=53.88 E-value=78 Score=28.40 Aligned_cols=31 Identities=10% Similarity=0.159 Sum_probs=23.5
Q ss_pred EEEeeCCCchHHHHHHHHHHCCCcEEEEeCC
Q 028618 72 VLIEPTSGNTGIGLAFMAAAKQYRLIITMPA 102 (206)
Q Consensus 72 ~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~ 102 (206)
.|..+..|-.+.-++.+|+.+|++++++.++
T Consensus 4 kvLi~~~geia~~ii~a~~~~Gi~~v~v~~~ 34 (472)
T PRK07178 4 KILIANRGEIAVRIVRACAEMGIRSVAIYSE 34 (472)
T ss_pred EEEEECCcHHHHHHHHHHHHcCCeEEEEeCC
Confidence 4566778888888888888888887777543
No 486
>PRK06484 short chain dehydrogenase; Validated
Probab=53.73 E-value=1e+02 Score=27.55 Aligned_cols=53 Identities=13% Similarity=0.096 Sum_probs=35.9
Q ss_pred CeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCC
Q 028618 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 124 (206)
Q Consensus 70 ~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~ 124 (206)
+..+|+..++--|.++|......|.+++++-.. .....+..+..|.++..+..
T Consensus 6 k~~lITGas~gIG~aia~~l~~~G~~V~~~~r~--~~~~~~~~~~~~~~~~~~~~ 58 (520)
T PRK06484 6 RVVLVTGAAGGIGRAACQRFARAGDQVVVADRN--VERARERADSLGPDHHALAM 58 (520)
T ss_pred eEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCC--HHHHHHHHHHhCCceeEEEe
Confidence 467888888889999999999999887766432 22222334556766654443
No 487
>COG0505 CarA Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=53.71 E-value=1.3e+02 Score=26.14 Aligned_cols=54 Identities=22% Similarity=0.274 Sum_probs=36.8
Q ss_pred EEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEc-CCCCCCcc
Q 028618 96 LIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYML-QQFENPAN 156 (206)
Q Consensus 96 ~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~ 156 (206)
.++++.=......++.+...|++|++||.+.. +.+..+.+|+..|+ |.-.||..
T Consensus 181 ~Vv~iD~GvK~nIlr~L~~rg~~vtVVP~~t~-------~eeIl~~~pDGiflSNGPGDP~~ 235 (368)
T COG0505 181 HVVVIDFGVKRNILRELVKRGCRVTVVPADTS-------AEEILALNPDGIFLSNGPGDPAP 235 (368)
T ss_pred EEEEEEcCccHHHHHHHHHCCCeEEEEcCCCC-------HHHHHhhCCCEEEEeCCCCChhH
Confidence 44555556677788899999999999998754 33444455666665 55556654
No 488
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=53.69 E-value=98 Score=26.58 Aligned_cols=55 Identities=29% Similarity=0.446 Sum_probs=38.2
Q ss_pred CCCCCCCeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 028618 64 GLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 121 (206)
Q Consensus 64 g~~~~~~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~ 121 (206)
+.+.+++..+|. ..|..|.+++..|+.+|...++.+.. .+.+.+.++.+|++-++
T Consensus 199 ~~~~~g~~VlV~-g~g~vG~~ai~lA~~~G~~~vi~~~~--~~~~~~~~~~~g~~~~v 253 (384)
T cd08265 199 GGFRPGAYVVVY-GAGPIGLAAIALAKAAGASKVIAFEI--SEERRNLAKEMGADYVF 253 (384)
T ss_pred CCCCCCCEEEEE-CCCHHHHHHHHHHHHcCCCEEEEEcC--CHHHHHHHHHcCCCEEE
Confidence 456777666666 56999999999999999854444322 33467777888875443
No 489
>cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=53.62 E-value=1.2e+02 Score=24.76 Aligned_cols=55 Identities=31% Similarity=0.418 Sum_probs=37.3
Q ss_pred cCCCCCCCeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEEE
Q 028618 63 KGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 121 (206)
Q Consensus 63 ~g~~~~~~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~ 121 (206)
.+.+.+++..++. .+|..|.+++..|+..|.++++..+ +..+++.++.+|++-++
T Consensus 155 ~~~~~~g~~vli~-g~g~~g~~~~~~a~~~G~~v~~~~~---~~~~~~~~~~~g~~~~~ 209 (336)
T cd08276 155 LGPLKPGDTVLVQ-GTGGVSLFALQFAKAAGARVIATSS---SDEKLERAKALGADHVI 209 (336)
T ss_pred hcCCCCCCEEEEE-CCcHHHHHHHHHHHHcCCEEEEEeC---CHHHHHHHHHcCCCEEE
Confidence 3456666555555 6788999999999999999655543 33556666666765443
No 490
>PF02608 Bmp: Basic membrane protein; InterPro: IPR003760 This is a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. All of these proteins are outer membrane proteins and are thus antigenic in nature when possessed by the pathogenic members of the family []. The Bacillus subtilis degR, a positive regulator of the production of degradative enzymes, is also a member of this group [].; GO: 0005886 plasma membrane; PDB: 2HQB_A 3S99_A 2FQW_A 2FQY_A 2FQX_A.
Probab=53.53 E-value=30 Score=29.03 Aligned_cols=119 Identities=17% Similarity=0.115 Sum_probs=61.8
Q ss_pred HHHHHHHHHC-CCcEEEEeCCC-CC---HHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCeEEc--CCCCCCc
Q 028618 83 IGLAFMAAAK-QYRLIITMPAS-MS---LERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYML--QQFENPA 155 (206)
Q Consensus 83 ~alA~~a~~~-g~~~~ivvp~~-~~---~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~ 155 (206)
.++-.+.+.+ |+++..+-+.. .. ...++.+..-|+++++..+.. ..+.+.+.++++|+..|+ +.+....
T Consensus 23 ~G~~~~~~~~~~i~~~~~e~~~~~~~~~~~~~~~~~~~g~dlIi~~g~~----~~~~~~~vA~~yPd~~F~~~d~~~~~~ 98 (306)
T PF02608_consen 23 EGLKRAEKELDGIEIIYVENVPETDADYEEAIRQLADQGYDLIIGHGFE----YSDALQEVAKEYPDTKFIIIDGYIDAP 98 (306)
T ss_dssp HHHHHHHHHCTTEEEEEEES-S-TCHHHHHHHHHHHHTT-SEEEEESGG----GHHHHHHHHTC-TTSEEEEESS---ST
T ss_pred HHHHHHHHHcCCceEEEEecCCccHHHHHHHHHHHHHcCCCEEEEccHH----HHHHHHHHHHHCCCCEEEEEecCcCCC
Confidence 4556667788 88877776654 22 334556667899999997753 344566778888887663 3322222
Q ss_pred --c-------HHHHHHhHHHHHHhhhCCCCCEEEE---cc---CcchHHHHHHHHHHhcCCCCeE
Q 028618 156 --N-------PKIHYETTGPELWKGSGGRIDALVS---GI---GTGGTITGAGKFLKEKNPNIKV 205 (206)
Q Consensus 156 --~-------~~~g~~t~~~Ei~~q~~~~~d~vv~---~v---G~Gg~~aGi~~~~k~~~p~~~v 205 (206)
| ...+..-.|.-.........-.++- +. ..=....|...+.+..+|+++|
T Consensus 99 ~~Nv~~~~f~~~e~~fLaG~~Aa~~tkt~~vg~ig~i~G~~~p~~~~~~~gF~~Ga~~~np~i~v 163 (306)
T PF02608_consen 99 EPNVISITFREEEASFLAGYLAALMTKTGKVGFIGDIGGMDIPPVNRFINGFIAGAKYVNPDIKV 163 (306)
T ss_dssp -TTEEEEEE-HHHHHHHHHHHHHHHHSSTEEEEEEEEES--SCTTHHHHHHHHHHHHHTTTT-EE
T ss_pred CCcEEEEEccccchhHHHHHHHHHHhccCcccccccccCCCcHhHHHHHHHHHHHHHHhCcCceE
Confidence 2 1111111222222222211122222 11 1223567888899999999987
No 491
>PLN02477 glutamate dehydrogenase
Probab=53.51 E-value=66 Score=28.55 Aligned_cols=53 Identities=15% Similarity=0.043 Sum_probs=40.0
Q ss_pred hhHHHHHHHHHHHH-cCCCCCCCeEEEeeCCCchHHHHHHHHHHCCCcEEEEeCC
Q 028618 49 KDRIGYSMISDAEA-KGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPA 102 (206)
Q Consensus 49 K~R~a~~~~~~a~~-~g~~~~~~~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~ 102 (206)
-.||..+.+..+.+ .|. .....+++.-..||-|..+|......|.+++.+...
T Consensus 185 Tg~Gv~~~~~~~~~~~g~-~l~g~~VaIqGfGnVG~~~A~~L~e~GakVVaVsD~ 238 (410)
T PLN02477 185 TGRGVVFATEALLAEHGK-SIAGQTFVIQGFGNVGSWAAQLIHEKGGKIVAVSDI 238 (410)
T ss_pred chHHHHHHHHHHHHHcCC-CccCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECC
Confidence 44688887777654 443 333467888899999999999999999998876543
No 492
>cd06453 SufS_like Cysteine desulfurase (SufS)-like. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.
Probab=53.47 E-value=76 Score=26.89 Aligned_cols=54 Identities=13% Similarity=0.054 Sum_probs=29.9
Q ss_pred EEEeeCCCchHHHHHHHHHHCC--CcEEEEeCCCCCHHH----HHHHHHcCCEEEEeCCC
Q 028618 72 VLIEPTSGNTGIGLAFMAAAKQ--YRLIITMPASMSLER----RIILRAFGAELVLTDPA 125 (206)
Q Consensus 72 ~vv~aSsGN~g~alA~~a~~~g--~~~~ivvp~~~~~~~----~~~~~~~Ga~v~~~~~~ 125 (206)
.++..+++..+..++..+-..+ -.-.|+++....... ....+.+|++++.++.+
T Consensus 63 ~v~~~~g~t~a~~~~~~~l~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~~g~~~~~v~~~ 122 (373)
T cd06453 63 EIIFTRNTTEAINLVAYGLGRANKPGDEIVTSVMEHHSNIVPWQQLAERTGAKLKVVPVD 122 (373)
T ss_pred eEEEeCCHHHHHHHHHHHhhhcCCCCCEEEECcchhHHHHHHHHHHHhhcCcEEEEeecC
Confidence 4666666676766665553321 123455555433322 22345789999988754
No 493
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=53.39 E-value=1.1e+02 Score=26.39 Aligned_cols=94 Identities=17% Similarity=0.220 Sum_probs=40.1
Q ss_pred EEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCC--hHHHHHHHHHHHHhCCC-eEEcCCC-CCCccHHHHHHhHHHHHHhh
Q 028618 96 LIITMPASMSLERRIILRAFGAELVLTDPAKG--MKGAVQKAEEILAKTPN-AYMLQQF-ENPANPKIHYETTGPELWKG 171 (206)
Q Consensus 96 ~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~--~~~~~~~a~~~~~~~~~-~~~~~~~-~~~~~~~~g~~t~~~Ei~~q 171 (206)
..++.=.+.-..--+.++.+|-++.++-+... .....+...+..++.+- ....+.. .||.. .- -.-+.+++++
T Consensus 5 ~~i~fG~g~l~~l~~~~~~~g~r~livt~~~~~~~~g~~~~v~~~L~~~~~~~~~~~~v~~~p~~--~~-v~~~~~~~~~ 81 (380)
T cd08185 5 TKIVFGAGKLNELGEEALKPGKKALIVTGNGSSKKTGYLDRVIELLKQAGVEVVVFDKVEPNPTT--TT-VMEGAALARE 81 (380)
T ss_pred CeEEECcCHHHHHHHHHHhcCCeEEEEeCCCchhhccHHHHHHHHHHHcCCeEEEeCCccCCCCH--HH-HHHHHHHHHH
Confidence 33333333333333445556666666654321 12334444444444321 2212222 23332 11 1112233443
Q ss_pred hCCCCCEEEEccCcchHHHHHHHHH
Q 028618 172 SGGRIDALVSGIGTGGTITGAGKFL 196 (206)
Q Consensus 172 ~~~~~d~vv~~vG~Gg~~aGi~~~~ 196 (206)
. ++|.| +++|+|+.+ =+++++
T Consensus 82 ~--~~D~I-iavGGGS~i-D~aK~i 102 (380)
T cd08185 82 E--GCDFV-VGLGGGSSM-DTAKAI 102 (380)
T ss_pred c--CCCEE-EEeCCccHH-HHHHHH
Confidence 3 46765 678887754 444443
No 494
>PRK15481 transcriptional regulatory protein PtsJ; Provisional
Probab=53.36 E-value=1.1e+02 Score=26.88 Aligned_cols=80 Identities=20% Similarity=0.173 Sum_probs=44.7
Q ss_pred EEEeeCCCchHHHHHHHHHH-CCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCC-ChHHHHHHHHHHHHhCCCeEEcC
Q 028618 72 VLIEPTSGNTGIGLAFMAAA-KQYRLIITMPASMSLERRIILRAFGAELVLTDPAK-GMKGAVQKAEEILAKTPNAYMLQ 149 (206)
Q Consensus 72 ~vv~aSsGN~g~alA~~a~~-~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~-~~~~~~~~a~~~~~~~~~~~~~~ 149 (206)
.|+..+++..+..++..+-. -| + .|+++.-.-..-...++.+|++++.++.+. +++ .+..++..++....+|+.
T Consensus 143 ~Iiit~G~~~al~~~~~~l~~pg-d-~Vlv~~P~y~~~~~~~~~~g~~~~~v~~~~~g~~--~~~l~~~~~~~~k~i~~~ 218 (431)
T PRK15481 143 EIDLTSGAIDAIERLLCAHLLPG-D-SVAVEDPCFLSSINMLRYAGFSASPVSVDAEGMQ--PEKLERALAQGARAVILT 218 (431)
T ss_pred eEEEecCcHHHHHHHHHHhCCCC-C-EEEEeCCCcHHHHHHHHHcCCeEEeeccCCCCCC--HHHHHHHHhcCCCEEEEC
Confidence 57777788887776665532 23 2 334444333444677789999999997542 222 222223333344666765
Q ss_pred -CCCCCc
Q 028618 150 -QFENPA 155 (206)
Q Consensus 150 -~~~~~~ 155 (206)
...||.
T Consensus 219 p~p~NPT 225 (431)
T PRK15481 219 PRAHNPT 225 (431)
T ss_pred CCCCCCC
Confidence 344443
No 495
>PRK07074 short chain dehydrogenase; Provisional
Probab=53.26 E-value=1.1e+02 Score=24.17 Aligned_cols=31 Identities=23% Similarity=0.197 Sum_probs=26.5
Q ss_pred eEEEeeCCCchHHHHHHHHHHCCCcEEEEeC
Q 028618 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMP 101 (206)
Q Consensus 71 ~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp 101 (206)
+.+|+..+|.-|.++|......|.+++++..
T Consensus 4 ~ilItGat~~iG~~la~~L~~~g~~v~~~~r 34 (257)
T PRK07074 4 TALVTGAAGGIGQALARRFLAAGDRVLALDI 34 (257)
T ss_pred EEEEECCcchHHHHHHHHHHHCCCEEEEEeC
Confidence 5788888899999999999889998777754
No 496
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=53.13 E-value=18 Score=29.94 Aligned_cols=31 Identities=16% Similarity=0.127 Sum_probs=25.6
Q ss_pred EEEeeCCCchHHHHHHHHHHCCCcEEEEeCC
Q 028618 72 VLIEPTSGNTGIGLAFMAAAKQYRLIITMPA 102 (206)
Q Consensus 72 ~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~ 102 (206)
.|+...+|-.|.++|.+.++.|++++||=..
T Consensus 3 dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~~ 33 (356)
T PF01494_consen 3 DVAIVGAGPAGLAAALALARAGIDVTIIERR 33 (356)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTCEEEEEESS
T ss_pred eEEEECCCHHHHHHHHHHHhcccccccchhc
Confidence 4778899999999999999999999998644
No 497
>PLN03026 histidinol-phosphate aminotransferase; Provisional
Probab=52.98 E-value=89 Score=26.91 Aligned_cols=82 Identities=15% Similarity=0.070 Sum_probs=40.9
Q ss_pred EEEeeCCCchHHHHHHHHH-HCCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHH-HhCCCeEEcC
Q 028618 72 VLIEPTSGNTGIGLAFMAA-AKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEIL-AKTPNAYMLQ 149 (206)
Q Consensus 72 ~vv~aSsGN~g~alA~~a~-~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~~~~~~~~~~a~~~~-~~~~~~~~~~ 149 (206)
.|+..+++..+..++..+- .-|= .|++|.-.-..-....+.+|++++.++.+..+.-..+...+.. ......+++.
T Consensus 105 ~I~~t~Ga~~~i~~~~~~~~~~gd--~Vlv~~P~y~~y~~~~~~~g~~~~~v~~~~~~~~d~~~l~~~~~~~~~~~v~l~ 182 (380)
T PLN03026 105 NILVGCGADELIDLLMRCVLDPGD--KIIDCPPTFGMYVFDAAVNGAEVIKVPRTPDFSLDVPRIVEAVETHKPKLLFLT 182 (380)
T ss_pred hEEEcCCHHHHHHHHHHHhcCCCC--EEEEcCCChHHHHHHHHHcCCEEEEeecCCCCCcCHHHHHHHHhccCCcEEEEe
Confidence 4565666666666554432 2232 3444432233334456789999999876422211122222222 3344677775
Q ss_pred CCCCCc
Q 028618 150 QFENPA 155 (206)
Q Consensus 150 ~~~~~~ 155 (206)
..+||.
T Consensus 183 ~P~NPT 188 (380)
T PLN03026 183 SPNNPD 188 (380)
T ss_pred CCCCCC
Confidence 444443
No 498
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=52.95 E-value=54 Score=25.86 Aligned_cols=113 Identities=12% Similarity=0.127 Sum_probs=59.9
Q ss_pred eEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHH---------------HHcCCEEEEeCCCCChHHHHHHH
Q 028618 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIIL---------------RAFGAELVLTDPAKGMKGAVQKA 135 (206)
Q Consensus 71 ~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~---------------~~~Ga~v~~~~~~~~~~~~~~~a 135 (206)
+.++...+|..|...+..-...|.+++++-|+-.+. ..+.. ..-++++++...+. ++.....
T Consensus 11 k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~~~~-l~~l~~~~~i~~~~~~~~~~~l~~adlViaaT~d--~elN~~i 87 (202)
T PRK06718 11 KRVVIVGGGKVAGRRAITLLKYGAHIVVISPELTEN-LVKLVEEGKIRWKQKEFEPSDIVDAFLVIAATND--PRVNEQV 87 (202)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCHH-HHHHHhCCCEEEEecCCChhhcCCceEEEEcCCC--HHHHHHH
Confidence 356667778888888777777887777776653322 11111 12345555554332 2333444
Q ss_pred HHHHHhCCCeEEcCCCCCCccHHHHHHhHHHHHHhhhCCCCCEEEEccCcchHHHHHHHHHHh
Q 028618 136 EEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTITGAGKFLKE 198 (206)
Q Consensus 136 ~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~Ei~~q~~~~~d~vv~~vG~Gg~~aGi~~~~k~ 198 (206)
.+.+++. . ++|-.++|.. + .-+.+-+.+ -+-+.++++|+|..-.+++.+++
T Consensus 88 ~~~a~~~-~--lvn~~d~~~~---~-~f~~Pa~~~-----~g~l~iaIsT~G~sP~la~~lr~ 138 (202)
T PRK06718 88 KEDLPEN-A--LFNVITDAES---G-NVVFPSALH-----RGKLTISVSTDGASPKLAKKIRD 138 (202)
T ss_pred HHHHHhC-C--cEEECCCCcc---C-eEEEeeEEE-----cCCeEEEEECCCCChHHHHHHHH
Confidence 4445432 2 2333344332 1 000111111 25578888888888788887765
No 499
>PRK06179 short chain dehydrogenase; Provisional
Probab=52.92 E-value=84 Score=25.18 Aligned_cols=50 Identities=24% Similarity=0.175 Sum_probs=34.8
Q ss_pred eEEEeeCCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHcCCEEEEeCCC
Q 028618 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPA 125 (206)
Q Consensus 71 ~~vv~aSsGN~g~alA~~a~~~g~~~~ivvp~~~~~~~~~~~~~~Ga~v~~~~~~ 125 (206)
..+|+..+|.-|.++|......|.++++....... .. ...+.+++.++-.
T Consensus 6 ~vlVtGasg~iG~~~a~~l~~~g~~V~~~~r~~~~---~~--~~~~~~~~~~D~~ 55 (270)
T PRK06179 6 VALVTGASSGIGRATAEKLARAGYRVFGTSRNPAR---AA--PIPGVELLELDVT 55 (270)
T ss_pred EEEEecCCCHHHHHHHHHHHHCCCEEEEEeCChhh---cc--ccCCCeeEEeecC
Confidence 57888899999999999998999998777654211 11 1235566666544
No 500
>PRK09257 aromatic amino acid aminotransferase; Provisional
Probab=52.85 E-value=1.5e+02 Score=25.53 Aligned_cols=78 Identities=10% Similarity=0.021 Sum_probs=43.6
Q ss_pred CCCCChhhHHHHHHHHHHHHcCC--CCCCCeEEEeeCCCchHHHHHHHHH---HCCCcEEEEeCCCCCHHHHHHHHHcCC
Q 028618 43 EPCSSVKDRIGYSMISDAEAKGL--ITPGESVLIEPTSGNTGIGLAFMAA---AKQYRLIITMPASMSLERRIILRAFGA 117 (206)
Q Consensus 43 ~ptGS~K~R~a~~~~~~a~~~g~--~~~~~~~vv~aSsGN~g~alA~~a~---~~g~~~~ivvp~~~~~~~~~~~~~~Ga 117 (206)
.+.|....|-+..... ...+. +.+++..++..+++.+|..++..+- .-| -.|++|.-.-+.-...++.+|+
T Consensus 67 ~~~G~~~lR~aia~~~--~~~~~~~~~~~~i~v~iT~Ga~~al~~~~~~l~~~~pG--d~Vlv~~P~y~~~~~~~~~~g~ 142 (396)
T PRK09257 67 PIEGLAAYRQAVQELL--FGADSPALAAGRVATVQTPGGTGALRVGADFLKRAFPD--AKVWVSDPTWPNHRAIFEAAGL 142 (396)
T ss_pred CCCCCHHHHHHHHHHh--cCCCCcccccCeEEEEecCCccHHHHHHHHHHHHhCCC--CeEEECCCCcccHHHHHHHcCC
Confidence 3457777775544322 22221 2332112366677788877775332 234 2455555444444677788999
Q ss_pred EEEEeCC
Q 028618 118 ELVLTDP 124 (206)
Q Consensus 118 ~v~~~~~ 124 (206)
+++.++.
T Consensus 143 ~~v~v~~ 149 (396)
T PRK09257 143 EVKTYPY 149 (396)
T ss_pred cEEEEec
Confidence 9998874
Done!