RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 028618
(206 letters)
>1z7w_A Cysteine synthase; transferase; HET: PLP; 2.20A {Arabidopsis
thaliana} SCOP: c.79.1.1 PDB: 1z7y_A* 2isq_A*
Length = 322
Score = 403 bits (1038), Expect = e-144
Identities = 171/200 (85%), Positives = 184/200 (92%)
Query: 6 SNIAKDVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGL 65
S IAKDVTELIGNTPLVYLNN+ GCV R+AAKLEMMEPCSSVKDRIG+SMISDAE KGL
Sbjct: 3 SRIAKDVTELIGNTPLVYLNNVAEGCVGRVAAKLEMMEPCSSVKDRIGFSMISDAEKKGL 62
Query: 66 ITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPA 125
I PGESVLIEPTSGNTG+GLAF AAAK Y+LIITMPASMS ERRIIL AFG ELVLTDPA
Sbjct: 63 IKPGESVLIEPTSGNTGVGLAFTAAAKGYKLIITMPASMSTERRIILLAFGVELVLTDPA 122
Query: 126 KGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGT 185
KGMKGA+ KAEEILAKTPN YMLQQFENPANPKIHYETTGPE+WKG+GG+ID VSGIGT
Sbjct: 123 KGMKGAIAKAEEILAKTPNGYMLQQFENPANPKIHYETTGPEIWKGTGGKIDGFVSGIGT 182
Query: 186 GGTITGAGKFLKEKNPNIKV 205
GGTITGAGK+LKE+N N+K+
Sbjct: 183 GGTITGAGKYLKEQNANVKL 202
>3tbh_A O-acetyl serine sulfhydrylase; cysteine synthase, type II PLP
dependent enzyme, serine ACET transferase; HET: LLP;
1.68A {Leishmania donovani} PDB: 3t4p_A* 3spx_A* 4air_A*
Length = 334
Score = 399 bits (1027), Expect = e-142
Identities = 94/202 (46%), Positives = 141/202 (69%), Gaps = 1/202 (0%)
Query: 4 ESSNIAKDVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAK 63
+S N+A+ + +LIG TP +YLN + N A++ K+E P +SVKDR+G+++ AE +
Sbjct: 7 KSKNVAQSIDQLIGQTPALYLNKL-NNTKAKVVLKMECENPMASVKDRLGFAIYDKAEKE 65
Query: 64 GLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTD 123
G + PG+S+++E +SGNTG+ LA + A + Y++IITMP SMSLERR +LR FGAE++LT
Sbjct: 66 GKLIPGKSIVVESSSGNTGVSLAHLGAIRGYKVIITMPESMSLERRCLLRIFGAEVILTP 125
Query: 124 PAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGI 183
A GMKGAV A++I+A PNA + QF N IH ETTGPE+W+ + +D ++G+
Sbjct: 126 AALGMKGAVAMAKKIVAANPNAVLADQFATKYNALIHEETTGPEIWEQTNHNVDCFIAGV 185
Query: 184 GTGGTITGAGKFLKEKNPNIKV 205
GTGGT+TG + LK+ + ++
Sbjct: 186 GTGGTLTGVARALKKMGSHARI 207
>4aec_A Cysteine synthase, mitochondrial; lyase, cysteine synthesis,
assimilatory sulfate reduction, S plant inorganic sulfur
uptake; HET: PLP; 2.40A {Arabidopsis thaliana}
Length = 430
Score = 402 bits (1035), Expect = e-142
Identities = 150/204 (73%), Positives = 180/204 (88%)
Query: 2 AVESSNIAKDVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAE 61
+ NIA +V++LIG TP+VYLN+I GCVA IAAKLE+MEPC SVKDRIGYSM++DAE
Sbjct: 107 GPDGLNIADNVSQLIGKTPMVYLNSIAKGCVANIAAKLEIMEPCCSVKDRIGYSMVTDAE 166
Query: 62 AKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVL 121
KG I+PG+SVL+EPTSGNTGIGLAF+AA++ YRLI+TMPASMS+ERR++L+AFGAELVL
Sbjct: 167 QKGFISPGKSVLVEPTSGNTGIGLAFIAASRGYRLILTMPASMSMERRVLLKAFGAELVL 226
Query: 122 TDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVS 181
TDPAKGM GAVQKAEEIL TP+AYMLQQF+NPANPKIHYETTGPE+W + G++D V+
Sbjct: 227 TDPAKGMTGAVQKAEEILKNTPDAYMLQQFDNPANPKIHYETTGPEIWDDTKGKVDIFVA 286
Query: 182 GIGTGGTITGAGKFLKEKNPNIKV 205
GIGTGGTITG G+F+KEKNP +V
Sbjct: 287 GIGTGGTITGVGRFIKEKNPKTQV 310
>2q3b_A Cysteine synthase A; pyridoxal-5'-phosphate, sulphur metabolism,
cysteine biosynthesis, transferase; HET: LLP; 1.80A
{Mycobacterium tuberculosis} PDB: 2q3c_A* 2q3d_A* 3rr2_A
Length = 313
Score = 396 bits (1021), Expect = e-141
Identities = 107/199 (53%), Positives = 146/199 (73%), Gaps = 1/199 (0%)
Query: 7 NIAKDVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLI 66
+IA+D+T+LIG TPLV L + +G VA I AKLE P +SVKDRIG +M+ AE GLI
Sbjct: 5 SIAEDITQLIGRTPLVRLRRVTDGAVADIVAKLEFFNPANSVKDRIGVAMLQAAEQAGLI 64
Query: 67 TPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAK 126
P ++++EPTSGNTGI LA + AA+ YR ++TMP +MSLERR++LRA+GAEL+LT A
Sbjct: 65 KPD-TIILEPTSGNTGIALAMVCAARGYRCVLTMPETMSLERRMLLRAYGAELILTPGAD 123
Query: 127 GMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTG 186
GM GA+ KAEE+ ++ QQFENPANP IH TT E+W+ + G++D +V+G+GTG
Sbjct: 124 GMSGAIAKAEELAKTDQRYFVPQQFENPANPAIHRVTTAEEVWRDTDGKVDIVVAGVGTG 183
Query: 187 GTITGAGKFLKEKNPNIKV 205
GTITG + +KE+ P+ +
Sbjct: 184 GTITGVAQVIKERKPSARF 202
>1ve1_A O-acetylserine sulfhydrylase; PLP, transferase, riken structural
genomics/proteomics initi RSGI, structural genomics;
HET: PLP; 1.45A {Thermus thermophilus} SCOP: c.79.1.1
PDB: 2eco_A* 2ecq_A* 2efy_A*
Length = 304
Score = 380 bits (978), Expect = e-135
Identities = 107/195 (54%), Positives = 140/195 (71%), Gaps = 2/195 (1%)
Query: 12 VTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPG-E 70
V IG TP+V L +V +A + KLE + P S+KDR + MI DAE +G++ PG
Sbjct: 3 VEGAIGKTPVVRLAKVVEPDMAEVWVKLEGLNPGGSIKDRPAWYMIKDAEERGILRPGSG 62
Query: 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKG 130
V++EPTSGNTGIGLA +AA++ YRLI+TMPA MS ER+ +L+AFGAELVLTDP + M
Sbjct: 63 QVIVEPTSGNTGIGLAMIAASRGYRLILTMPAQMSEERKRVLKAFGAELVLTDPERRMLA 122
Query: 131 AVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTIT 190
A ++A L + A+M QF+NPAN + HYETTGPEL++ GRIDA V G GTGGTIT
Sbjct: 123 AREEALR-LKEELGAFMPDQFKNPANVRAHYETTGPELYEALEGRIDAFVYGSGTGGTIT 181
Query: 191 GAGKFLKEKNPNIKV 205
G G++LKE+ P++KV
Sbjct: 182 GVGRYLKERIPHVKV 196
>1y7l_A O-acetylserine sulfhydrylase, O-acetylserine (thiol)-lyase; X-RAY
crystallography, sulfhydrylase; HET: LLP; 1.55A
{Haemophilus influenzae} SCOP: c.79.1.1 PDB: 3iqg_X*
3iqh_X* 3iqi_X* 1fcj_A* 1oas_A* 1d6s_A*
Length = 316
Score = 378 bits (974), Expect = e-134
Identities = 101/201 (50%), Positives = 137/201 (68%), Gaps = 5/201 (2%)
Query: 7 NIAKDVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLI 66
I D + IGNTPLV L + G + K+E P SVK RIG +M+ AE G +
Sbjct: 2 AIYADNSYSIGNTPLVRLKHF--GHNGNVVVKIEGRNPSYSVKCRIGANMVWQAEKDGTL 59
Query: 67 TPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAK 126
T G +++ TSGNTGI LA++AAA+ Y++ +TMP +MSLER+ +L G LVLT+ AK
Sbjct: 60 TKG-KEIVDATSGNTGIALAYVAAARGYKITLTMPETMSLERKRLLCGLGVNLVLTEGAK 118
Query: 127 GMKGAVQKAEEILAKTPNAY-MLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGT 185
GMKGA+ KAEEI+A P+ Y ML+QFENPANP+IH ETTGPE+WK + G++D +V+G+GT
Sbjct: 119 GMKGAIAKAEEIVASDPSRYVMLKQFENPANPQIHRETTGPEIWKDTDGKVDVVVAGVGT 178
Query: 186 GGTITGAGKFLK-EKNPNIKV 205
GG+ITG + +K + I
Sbjct: 179 GGSITGISRAIKLDFGKQITS 199
>2egu_A Cysteine synthase; O-acetylserine sulfhydrase, structural genomics,
NPPSFA, NAT project on protein structural and functional
analyses; 1.90A {Geobacillus kaustophilus}
Length = 308
Score = 377 bits (971), Expect = e-134
Identities = 113/200 (56%), Positives = 144/200 (72%), Gaps = 2/200 (1%)
Query: 6 SNIAKDVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGL 65
+ +TELIG+TP V LN IV+ A + KLE M P SSVKDRI +MI AE G
Sbjct: 2 ARTVNSITELIGDTPAVKLNRIVDEDSADVYLKLEFMNPGSSVKDRIALAMIEAAEKAGK 61
Query: 66 ITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPA 125
+ PG ++EPTSGNTGIGLA +AAAK Y+ ++ MP +MSLERR +LRA+GAELVLT A
Sbjct: 62 LKPG-DTIVEPTSGNTGIGLAMVAAAKGYKAVLVMPDTMSLERRNLLRAYGAELVLTPGA 120
Query: 126 KGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGT 185
+GM+GA+ KAEE L + +M QQF+N ANP+IH TTG E+ + G ++DA V+G+GT
Sbjct: 121 QGMRGAIAKAEE-LVREHGYFMPQQFKNEANPEIHRLTTGKEIVEQMGDQLDAFVAGVGT 179
Query: 186 GGTITGAGKFLKEKNPNIKV 205
GGTITGAGK L+E PNIK+
Sbjct: 180 GGTITGAGKVLREAYPNIKI 199
>2pqm_A Cysteine synthase; OASS, PLP, lyase; HET: PLP; 1.86A {Entamoeba
histolytica} PDB: 3bm5_A*
Length = 343
Score = 371 bits (956), Expect = e-131
Identities = 86/210 (40%), Positives = 127/210 (60%), Gaps = 7/210 (3%)
Query: 1 MAVESSNIAKDVTELIGNTPLVYLNNIVNGCV----ARIAAKLEMMEPCSSVKDRIGYSM 56
++ I ++ E IG TPLV L+ + RI KLE P SSVKDR+G+++
Sbjct: 6 ISSPRKRIYHNILETIGGTPLVELHGVTEHPRIKKGTRILVKLEYFNPMSSVKDRVGFNI 65
Query: 57 ISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFG 116
+ A G + PG +IE TSGNTGI L A YR+ I MP++MS+ER++I++AFG
Sbjct: 66 VYQAIKDGRLKPG-MEIIESTSGNTGIALCQAGAVFGYRVNIAMPSTMSVERQMIMKAFG 124
Query: 117 AELVLTDPAKGMKGAVQKAEEILAKTPNAY-MLQQFENPANPKIHYETTGPELWKGSGGR 175
AEL+LT+ KGM GA+++ +++ + P Y + QF NP N H+ T E+W+ + G
Sbjct: 125 AELILTEGKKGMPGAIEEVNKMIKENPGKYFVANQFGNPDNTAAHH-YTANEIWEDTDGE 183
Query: 176 IDALVSGIGTGGTITGAGKFLKEKNPNIKV 205
+D +VS +GT GT+ G + LKEK IK+
Sbjct: 184 VDIVVSAVGTSGTVIGVAEKLKEKKKGIKI 213
>1o58_A O-acetylserine sulfhydrylase; TM0665, structural genomics, J
protein structure initiative, joint center for
structural G transferase; 1.80A {Thermotoga maritima}
SCOP: c.79.1.1 PDB: 3fca_A*
Length = 303
Score = 358 bits (921), Expect = e-126
Identities = 96/201 (47%), Positives = 130/201 (64%), Gaps = 9/201 (4%)
Query: 6 SNIAKDVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGL 65
+ + LIG+TP+V L++I +RI KLE P SVKDR MI DAE +GL
Sbjct: 8 HHHHHMMERLIGSTPIVRLDSID----SRIFLKLEKNNPGGSVKDRPALFMILDAEKRGL 63
Query: 66 ITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPA 125
+ G ++EPTSGN GI +A + A + +R+I+TMP +MS+ERR +L+ GAELVLT
Sbjct: 64 LKNG---IVEPTSGNMGIAIAMIGAKRGHRVILTMPETMSVERRKVLKMLGAELVLTPGE 120
Query: 126 KGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGT 185
GMKGAV+KA E +++ A+ML QFENP N H TTGPE+ K +IDA V+G+GT
Sbjct: 121 LGMKGAVEKALE-ISRETGAHMLNQFENPYNVYSHQFTTGPEILKQMDYQIDAFVAGVGT 179
Query: 186 GGTITGAGKFLKEK-NPNIKV 205
GGTI+G G+ LK +K+
Sbjct: 180 GGTISGVGRVLKGFFGNGVKI 200
>2v03_A Cysteine synthase B; pyridoxal phosphate, cysteine biosynthesis,
transferase, ENZ kinetics, enzymatic sythesis of novel
compounds; HET: LLP CIT; 1.33A {Escherichia coli} PDB:
2bhs_A* 2bht_A* 2jc3_A*
Length = 303
Score = 355 bits (913), Expect = e-125
Identities = 94/195 (48%), Positives = 124/195 (63%), Gaps = 2/195 (1%)
Query: 11 DVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGE 70
+ + IGNTPLV L + + + KLE P SVKDR SMI +AE +G I PG
Sbjct: 3 TLEQTIGNTPLVKLQRMGPDNGSEVWLKLEGNNPAGSVKDRAALSMIVEAEKRGEIKPG- 61
Query: 71 SVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKG 130
VLIE TSGNTGI LA +AA K YR+ + MP +MS ERR +RA+GAEL+L +GM+G
Sbjct: 62 DVLIEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERRAAMRAYGAELILVTKEQGMEG 121
Query: 131 AVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVSGIGTGGTIT 190
A A E+ + +L QF NP NP HY TTGPE+W+ +GGRI VS +GT GTIT
Sbjct: 122 ARDLALEMANRGEG-KLLDQFNNPDNPYAHYTTTGPEIWQQTGGRITHFVSSMGTTGTIT 180
Query: 191 GAGKFLKEKNPNIKV 205
G +F++E++ + +
Sbjct: 181 GVSRFMREQSKPVTI 195
>3dwg_A Cysteine synthase B; sulfur carrier protein complex, beta-grAsp
fold, amino-acid biosynthesis; HET: PLP; 1.53A
{Mycobacterium tuberculosis} PDB: 3fgp_A* 3dki_A*
3dwi_A*
Length = 325
Score = 349 bits (897), Expect = e-122
Identities = 88/206 (42%), Positives = 118/206 (57%), Gaps = 9/206 (4%)
Query: 7 NIAKDVTELIGNTPLVYLNNIV-------NGCVARIAAKLEMMEPCSSVKDRIGYSMISD 59
+ + +GNTPLV L + +G R+ AKLE P S+KDR MI
Sbjct: 4 TRYDSLLQALGNTPLVGLQRLSPRWDDGRDGPHVRLWAKLEDRNPTGSIKDRPAVRMIEQ 63
Query: 60 AEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAEL 119
AEA GL+ PG + ++EPTSGNTGI LA A K YRLI MP + S+ERR +L +GA++
Sbjct: 64 AEADGLLRPG-ATILEPTSGNTGISLAMAARLKGYRLICVMPENTSVERRQLLELYGAQI 122
Query: 120 VLTDPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDAL 179
+ + G AV A+E+ A P+ ML Q+ NPAN HY TGPEL I
Sbjct: 123 IFSAAEGGSNTAVATAKELAATNPSWVMLYQYGNPANTDSHYCGTGPELLADL-PEITHF 181
Query: 180 VSGIGTGGTITGAGKFLKEKNPNIKV 205
V+G+GT GT+ G G+FL+E N+K+
Sbjct: 182 VAGLGTTGTLMGTGRFLREHVANVKI 207
>1wkv_A Cysteine synthase; homodimer, open alpha/beta folding, transferase;
HET: PLP; 2.00A {Aeropyrum pernix} SCOP: c.79.1.1
Length = 389
Score = 325 bits (834), Expect = e-112
Identities = 51/199 (25%), Positives = 90/199 (45%), Gaps = 9/199 (4%)
Query: 11 DVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCS-SVKDRIGYSMISDAEAKGLITPG 69
D E TPLV + R+ KLE P S SVKDR +IS + + G
Sbjct: 89 DFFERGKPTPLVRSR-LQLPNGVRVWLKLEWYNPFSLSVKDRPAVEIISRLSRR--VEKG 145
Query: 70 ESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMK 129
S++ + TS N G+ L+ +A YR + +P + +++ R GA++++ A
Sbjct: 146 -SLVADATSSNFGVALSAVARLYGYRARVYLPGAAEEFGKLLPRLLGAQVIVDPEAPSTV 204
Query: 130 GAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWK---GSGGRIDALVSGIGTG 186
+ + + +K + QF N AN + H T E++ G + + +GT
Sbjct: 205 HLLPRVMK-DSKNEGFVHVNQFYNDANFEAHMRGTAREIFVQSRRGGLALRGVAGSLGTS 263
Query: 187 GTITGAGKFLKEKNPNIKV 205
G ++ A +L+ +P+I+
Sbjct: 264 GHMSAAAFYLQSVDPSIRA 282
>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase;
HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB:
3pc2_A* 3pc4_A*
Length = 527
Score = 326 bits (839), Expect = e-111
Identities = 87/204 (42%), Positives = 123/204 (60%), Gaps = 6/204 (2%)
Query: 7 NIAKDVTELIGNTPLVYLNNIV--NGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKG 64
I ++ E+IG TPLV LNNI +G + AK E + P SVKDRIGY M+ DAE +G
Sbjct: 49 QITPNILEVIGCTPLVKLNNIPASDGIECEMYAKCEFLNPGGSVKDRIGYRMVQDAEEQG 108
Query: 65 LITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTD- 123
L+ PG +IEPTSGNTGIGLA A K Y+ II MP MS E+ LR GA+++ T
Sbjct: 109 LLKPG-YTIIEPTSGNTGIGLAMACAVKGYKCIIVMPEKMSNEKVSALRTLGAKIIRTPT 167
Query: 124 --PAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVS 181
+G + A+++ +TPN+ +L Q+ N NP HY+ T E+ ++D +V
Sbjct: 168 EAAYDSPEGLIYVAQQLQRETPNSIVLDQYRNAGNPLAHYDGTAAEILWQLDNKVDMIVV 227
Query: 182 GIGTGGTITGAGKFLKEKNPNIKV 205
GT GTI+G G+ +KE+ P+ ++
Sbjct: 228 SAGTAGTISGIGRKIKEQVPSCQI 251
>1jbq_A B, cystathionine beta-synthase, serine sulfhydrase; fold type II of
PLP enzymes, lyase; HET: HEM PLP; 2.60A {Homo sapiens}
SCOP: c.79.1.1 PDB: 1m54_A*
Length = 435
Score = 321 bits (826), Expect = e-110
Identities = 90/204 (44%), Positives = 120/204 (58%), Gaps = 6/204 (2%)
Query: 7 NIAKDVTELIGNTPLVYLNNIV--NGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKG 64
I D+ + IG+TP+V +N I G + AK E SVKDRI MI DAE G
Sbjct: 97 KILPDILKKIGDTPMVRINKIGKKFGLKCELLAKCEFFNAGGSVKDRISLRMIEDAERDG 156
Query: 65 LITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTD- 123
+ PG +IEPTSGNTGIGLA AA + YR II MP MS E+ +LRA GAE+V T
Sbjct: 157 TLKPG-DTIIEPTSGNTGIGLALAAAVRGYRCIIVMPEKMSSEKVDVLRALGAEIVRTPT 215
Query: 124 --PAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGSGGRIDALVS 181
+ V A + + PN+++L Q+ N +NP HY+TT E+ + G++D LV+
Sbjct: 216 NARFDSPESHVGVAWRLKNEIPNSHILDQYRNASNPLAHYDTTADEILQQCDGKLDMLVA 275
Query: 182 GIGTGGTITGAGKFLKEKNPNIKV 205
+GTGGTITG + LKEK P ++
Sbjct: 276 SVGTGGTITGIARKLKEKCPGCRI 299
>1e5x_A Threonine synthase; threonine biosynthesis, PLP enzyme,
S-adenosyl-methionine, allostery; 2.25A {Arabidopsis
thaliana} SCOP: c.79.1.1 PDB: 2c2b_A* 2c2g_A*
Length = 486
Score = 66.0 bits (161), Expect = 4e-13
Identities = 31/184 (16%), Positives = 62/184 (33%), Gaps = 13/184 (7%)
Query: 17 GNTPLVYLNNIVN--GCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLI 74
GN+ L + + + K + S KD ++S + +
Sbjct: 129 GNSNLFWAERFGKQFLGMNDLWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMKRPVVGVG 188
Query: 75 EPTSGNTGIGLAFMAAAKQYRLIITMPA-SMSLERRIILRAFGAELVLTDPAKGMKGAVQ 133
++G+T L+ A+ I+ +PA +S+ + + A GA ++ D
Sbjct: 189 CASTGDTSAALSAYCASAGIPSIVFLPANKISMAQLVQPIANGAFVLSID---TDFDGCM 245
Query: 134 KAEEILAKTPNAYMLQQFENPANPKIH--YETTGPELWKGSGGRI-DALVSGIGTGGTIT 190
K + Y+ N N +T E+ + ++ D ++ G G I
Sbjct: 246 KLIREITAELPIYLA----NSLNSLRLEGQKTAAIEILQQFDWQVPDWVIVPGGNLGNIY 301
Query: 191 GAGK 194
K
Sbjct: 302 AFYK 305
>2zsj_A Threonine synthase; PLP dependent enzyme, lyase; HET: PLP; 1.80A
{Aquifex aeolicus}
Length = 352
Score = 65.8 bits (161), Expect = 5e-13
Identities = 44/187 (23%), Positives = 68/187 (36%), Gaps = 17/187 (9%)
Query: 17 GNTPLVYLNNIVN--GCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLI 74
GNTPL+ +N+ G +I K E + P S KDR IS A G +I
Sbjct: 29 GNTPLIEADNLARAIGFKGKIYLKYEGLNPTGSFKDRGMTLAISKAVEAGK-----RAVI 83
Query: 75 EPTSGNTGIGLAFMAAAKQYRLIITMPASM-SLERRIILRAFGAELVLTDPAKGMKGAVQ 133
++GNT A AA R + +P ++ + +GA+++ G
Sbjct: 84 CASTGNTSASAAAYAARAGLRAYVLLPKGAVAIGKLSQAMIYGAKVLAIQ---GTFDDAL 140
Query: 134 KAEEILAKTPNAYMLQQFENPANPKIH--YETTGPELWKGSGGRIDALVSGIGTGGTITG 191
+ + ++ N NP +T E+ G D +G G IT
Sbjct: 141 NIVRKIGENFPVEIV----NSVNPYRIEGQKTAAFEICDTLGEAPDYHFIPVGNAGNITA 196
Query: 192 AGKFLKE 198
K K
Sbjct: 197 YWKGFKI 203
>2d1f_A Threonine synthase; amino acid synthesis, pyridoxal-5'-phosphate,
PLP, lyase; HET: PLP; 2.50A {Mycobacterium tuberculosis}
Length = 360
Score = 65.8 bits (161), Expect = 5e-13
Identities = 43/185 (23%), Positives = 71/185 (38%), Gaps = 14/185 (7%)
Query: 17 GNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEP 76
G TPL+ N+ I K+E + P S KDR ++DA A G ++
Sbjct: 37 GGTPLIAATNLSKQTGCTIHLKVEGLNPTGSFKDRGMTMAVTDALAHGQ-----RAVLCA 91
Query: 77 TSGNTGIGLAFMAAAKQYRLIITMPAS-MSLERRIILRAFGAELVLTDPAKGMKGAVQKA 135
++GNT A AA + +P +++ + GA+++ D ++ A
Sbjct: 92 STGNTSASAAAYAARAGITCAVLIPQGKIAMGKLAQAVMHGAKIIQID--GNFDDCLELA 149
Query: 136 EEILAKTPNAYMLQQFENPANPKIH--YETTGPELWKGSGGRIDALVSGIGTGGTITGAG 193
++ A P ++ N NP +T E+ G D +G G IT
Sbjct: 150 RKMAADFPTISLV----NSVNPVRIEGQKTAAFEIVDVLGTAPDVHALPVGNAGNITAYW 205
Query: 194 KFLKE 198
K E
Sbjct: 206 KGYTE 210
>3aey_A Threonine synthase; PLP, pyridoxal phosphate, lyase; 1.92A {Thermus
thermophilus} PDB: 1uin_A* 1uim_A* 3aex_A* 1v7c_A
Length = 351
Score = 63.4 bits (155), Expect = 2e-12
Identities = 43/187 (22%), Positives = 65/187 (34%), Gaps = 17/187 (9%)
Query: 17 GNTPLVYLNNIVNGCV--ARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLI 74
G+TPL+ L R+ AK E + P S KDR +S A G +
Sbjct: 27 GSTPLIPLKGPEEARKKGIRLYAKYEGLNPTGSFKDRGMTLAVSKAVEGGA-----QAVA 81
Query: 75 EPTSGNTGIGLAFMAAAKQYRLIITMPASM-SLERRIILRAFGAELVLTDPAKGMKGAVQ 133
++GNT A AA I+ +PA +L + GA +V + G
Sbjct: 82 CASTGNTAASAAAYAARAGILAIVVLPAGYVALGKVAQSLVHGARIVQVE---GNFDDAL 138
Query: 134 KAEEILAKTPNAYMLQQFENPANPKIH--YETTGPELWKGSGGRIDALVSGIGTGGTITG 191
+ + L + ++ N NP +T E+ G +G G IT
Sbjct: 139 RLTQKLTEAFPVALV----NSVNPHRLEGQKTLAFEVVDELGDAPHYHALPVGNAGNITA 194
Query: 192 AGKFLKE 198
K
Sbjct: 195 HWMGYKA 201
>1p5j_A L-serine dehydratase; lyase; HET: PLP; 2.50A {Homo sapiens} SCOP:
c.79.1.1 PDB: 1pwh_A* 1pwe_A*
Length = 372
Score = 58.8 bits (143), Expect = 1e-10
Identities = 36/214 (16%), Positives = 68/214 (31%), Gaps = 35/214 (16%)
Query: 6 SNIAKDVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMI---SDAEA 62
S L TP+ + + K++ +P S K R +
Sbjct: 34 SEFMMSGEPLHVKTPIRDSMALSKMAGTSVYLKMDSAQPSGSFKIRGIGHFCKRWAKQGC 93
Query: 63 KGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLT 122
+ ++GN G+ A+ A I +P + L+ GA +
Sbjct: 94 AHFVCS--------SAGNAGMAAAYAARQLGVPATIVVPGTTPALTIERLKNEGATCKVV 145
Query: 123 ----DPAKGMKGAVQKAEEILAKTPNAYMLQQFENP------ANPKIHYETTGPELWKGS 172
D A + A+ + P + F++P A + EL +
Sbjct: 146 GELLDEAF------ELAKALAKNNPGWVYIPPFDDPLIWEGHA-------SIVKELKETL 192
Query: 173 GGRIDALVSGIGTGGTITGAGKFLKE-KNPNIKV 205
+ A+ +G GG + G + L+E ++ V
Sbjct: 193 WEKPGAIALSVGGGGLLCGVVQGLQECGWGDVPV 226
>4d9i_A Diaminopropionate ammonia-lyase; fold type II PLP-dependent enzyme,
tryptophan synthase beta like PLP-dependent enzymes
superfamily; HET: IT1; 2.00A {Escherichia coli} PDB:
4d9g_A* 4d9n_A* 4d9k_A* 4d9m_A*
Length = 398
Score = 56.7 bits (137), Expect = 7e-10
Identities = 41/214 (19%), Positives = 68/214 (31%), Gaps = 30/214 (14%)
Query: 19 TPLVYLNNIVNGC-VARIAAKLEMM--------------EPCSSVKDRIGYSM-ISDAEA 62
TPL L+++ N V +I K E + ++ + E
Sbjct: 45 TPLCALDDLANLFGVKKILVKDESKRFGLNAFXMLGGAYAIAQLLCEKYHLDIETLSFEH 104
Query: 63 KGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLT 122
+ T GN G G+A+ A +I MP + ER + GAE ++T
Sbjct: 105 LKNAIGEKMTFATTTDGNHGRGVAWAAQQLGQNAVIYMPKGSAQERVDAILNLGAECIVT 164
Query: 123 DPAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIH------YETTGPELW---KGSG 173
D V+ + A+ ++Q KI Y T E + G
Sbjct: 165 DMNYDD--TVRLTMQ-HAQQHGWEVVQDTAWEGYTKIPTWIMQGYATLADEAVEQMREMG 221
Query: 174 GRIDALVSGIGTGGTITGAGKFLKE--KNPNIKV 205
++ G G G +L + N+
Sbjct: 222 VTPTHVLLQAGVGAMAGGVLGYLVDVYSPQNLHS 255
>2rkb_A Serine dehydratase-like; PLP bound enzyme, enzyme found in human
cells, lyase, pyridoxal phosphate; HET: PLP; 2.80A {Homo
sapiens}
Length = 318
Score = 52.9 bits (128), Expect = 1e-08
Identities = 45/205 (21%), Positives = 70/205 (34%), Gaps = 36/205 (17%)
Query: 15 LIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMI---SDAEAKGLITPGES 71
TPL+ + + K E ++P S K R + + L+
Sbjct: 4 FHVVTPLLESWALSQVAGMPVFLKCENVQPSGSFKIRGIGHFCQEMAKKGCRHLVCS--- 60
Query: 72 VLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLT----DPAKG 127
+ GN GI A+ A I +P S SL+ L+ GAE+ LT D A
Sbjct: 61 -----SGGNAGIAAAYAARKLGIPATIVLPESTSLQVVQRLQGEGAEVQLTGKVWDEAN- 114
Query: 128 MKGAVQKAEEILAKTPNAYMLQQFENP------ANPKIHYETTGPELWKGSGGRIDALV- 180
+A+E LAK + F++P A + EL ALV
Sbjct: 115 -----LRAQE-LAKRDGWENVPPFDHPLIWKGHA-------SLVQELKAVLRTPPGALVL 161
Query: 181 SGIGTGGTITGAGKFLKEKNPNIKV 205
+ G G L+ ++ +
Sbjct: 162 AVGGGGLLAGVVAGLLEVGWQHVPI 186
>3ss7_X D-serine dehydratase; type II fold, ALFA,beta-elimination, P
5'-phosphate, lyase; HET: PLP; 1.55A {Escherichia coli}
PDB: 3ss9_X* 3r0x_A* 3r0z_A
Length = 442
Score = 51.7 bits (124), Expect = 4e-08
Identities = 35/183 (19%), Positives = 64/183 (34%), Gaps = 16/183 (8%)
Query: 32 VARIAAKLEMMEPCSSVKDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAA 91
V A KL + ++ D YS + E K + + ++GN G+ + M+A
Sbjct: 126 VLAHAEKLALEAGLLTLDD--DYSKLLSPEFKQFF--SQYSIAVGSTGNLGLSIGIMSAR 181
Query: 92 KQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQKAEEILAKTPNAYMLQQF 151
+++ + M A ++ LR+ G +V + + AV++ + PN +
Sbjct: 182 IGFKVTVHMSADARAWKKAKLRSHGVTVVEYE--QDYGVAVEEGRKAAQSDPNCF-FIDD 238
Query: 152 ENPANPKIHYETTGPEL--------WKGSGGRIDALVSGIGTGGTITGAGKFLKEK-NPN 202
EN + Y G L + G GG G LK +
Sbjct: 239 ENSRTLFLGYSVAGQRLKAQFAQQGRIVDADNPLFVYLPCGVGGGPGGVAFGLKLAFGDH 298
Query: 203 IKV 205
+
Sbjct: 299 VHC 301
>1ve5_A Threonine deaminase; riken structural genomics/Pro initiative,
RSGI, structural genomics, lyase; HET: PLP; 2.15A
{Thermus thermophilus} SCOP: c.79.1.1
Length = 311
Score = 50.2 bits (121), Expect = 9e-08
Identities = 49/214 (22%), Positives = 81/214 (37%), Gaps = 42/214 (19%)
Query: 9 AKDVTELIGNTPLVY---LNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAE-AKG 64
+ + TPL+ L+ ++ R+ K E ++ S K R S E KG
Sbjct: 11 FRRIAPYTHRTPLLTSRLLDGLLG---KRLLLKAEHLQKTGSFKARGALSKALALENPKG 67
Query: 65 LITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 124
L+ +SGN G+A+ A + ++ MP S ++ RA+GAE+V
Sbjct: 68 LLAV--------SSGNHAQGVAYAAQVLGVKALVVMPEDASPYKKACARAYGAEVVDRGV 119
Query: 125 AKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIH-YE---------TTGPELW---KG 171
K + A + +T A IH ++ T G EL
Sbjct: 120 T--AKNREEVARALQEETGYAL------------IHPFDDPLVIAGQGTAGLELLAQAGR 165
Query: 172 SGGRIDALVSGIGTGGTITGAGKFLKEKNPNIKV 205
G A+++ +G GG + G +K +P V
Sbjct: 166 MGVFPGAVLAPVGGGGLLAGLATAVKALSPTTLV 199
>1v71_A Serine racemase, hypothetical protein C320.14 in chromosome III;
dimer, PLP, isomerase; HET: PLP; 1.70A
{Schizosaccharomyces pombe} SCOP: c.79.1.1 PDB: 1wtc_A*
2zpu_A* 2zr8_A*
Length = 323
Score = 49.0 bits (118), Expect = 2e-07
Identities = 40/207 (19%), Positives = 75/207 (36%), Gaps = 43/207 (20%)
Query: 16 IGNTPLVY---LNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMI---SDAE-AKGLITP 68
TP++ +N A + K E + + K R + + ++A+ G++T
Sbjct: 24 ANKTPVLTSSTVNKEFV---AEVFFKCENFQKMGAFKFRGALNALSQLNEAQRKAGVLTF 80
Query: 69 GESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGM 128
+SGN +A A I MP + + +G ++++ D
Sbjct: 81 --------SSGNHAQAIALSAKILGIPAKIIMPLDAPEAKVAATKGYGGQVIMYDRY--K 130
Query: 129 KGAVQKAEEILAKTPNAYMLQQFENPANPKIH-YE---------TTGPELWKGSGGRIDA 178
+ A+EI + I Y+ T EL++ G +DA
Sbjct: 131 DDREKMAKEISEREGLTI------------IPPYDHPHVLAGQGTAAKELFE-EVGPLDA 177
Query: 179 LVSGIGTGGTITGAGKFLKEKNPNIKV 205
L +G GG ++G+ + PN +V
Sbjct: 178 LFVCLGGGGLLSGSALAARHFAPNCEV 204
>3iau_A Threonine deaminase; pyridoxal phosphate, amino-acid biosynthesis,
defensive PROT jasmonic acid pathway, jasmonic
acid,structural genomics; HET: LLP 15P; 2.35A {Solanum
lycopersicum}
Length = 366
Score = 48.0 bits (115), Expect = 5e-07
Identities = 50/208 (24%), Positives = 79/208 (37%), Gaps = 37/208 (17%)
Query: 12 VTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMI---SDAE-AKGLIT 67
V ++ +PL + + K E + S K R Y+M+ S E KG+IT
Sbjct: 54 VYDVAIESPLELAEKLSDRLGVNFYIKREDKQRVFSFKLRGAYNMMSNLSREELDKGVIT 113
Query: 68 PGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLT----D 123
++GN G+A I MP + + +RA G ++VL D
Sbjct: 114 --------ASAGNHAQGVALAGQRLNCVAKIVMPTTTPQIKIDAVRALGGDVVLYGKTFD 165
Query: 124 PAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYE------TTGPELWKGSGGRID 177
A+ A E L++ + F++P T G E+ + I
Sbjct: 166 EAQ------THALE-LSEKDGLKYIPPFDDP-------GVIKGQGTIGTEINR-QLKDIH 210
Query: 178 ALVSGIGTGGTITGAGKFLKEKNPNIKV 205
A+ +G GG I G F K+ PN K+
Sbjct: 211 AVFIPVGGGGLIAGVATFFKQIAPNTKI 238
>1tdj_A Biosynthetic threonine deaminase; allostery, cooperative, tetramer,
regulation, pyridoxal PHOS isoleucine biosynthesis; HET:
PLP; 2.80A {Escherichia coli} SCOP: c.79.1.1 d.58.18.2
d.58.18.2
Length = 514
Score = 48.0 bits (115), Expect = 6e-07
Identities = 54/208 (25%), Positives = 87/208 (41%), Gaps = 37/208 (17%)
Query: 12 VTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMI---SDAE-AKGLIT 67
V E TPL + + + I K E +P S K R Y+M+ ++ + A G+IT
Sbjct: 25 VYEAAQVTPLQKMEKLSSRLDNVILVKREDRQPVHSFKLRGAYAMMAGLTEEQKAHGVIT 84
Query: 68 PGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLT----D 123
++GN G+AF +A + +I MP + + + +R FG E++L D
Sbjct: 85 A--------SAGNHAQGVAFSSARLGVKALIVMPTATADIKVDAVRGFGGEVLLHGANFD 136
Query: 124 PAKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYE------TTGPELWKGSGGRID 177
AK KA E L++ + F++P T EL + +D
Sbjct: 137 EAK------AKAIE-LSQQQGFTWVPPFDHP-------MVIAGQGTLALELLQ-QDAHLD 181
Query: 178 ALVSGIGTGGTITGAGKFLKEKNPNIKV 205
+ +G GG G +K+ P IKV
Sbjct: 182 RVFVPVGGGGLAAGVAVLIKQLMPQIKV 209
>3l6b_A Serine racemase; pyridoxal phosphate, PLP, isomerase; HET: PLP;
1.50A {Homo sapiens} PDB: 3l6r_A* 3hmk_A* 3l6c_A*
Length = 346
Score = 45.2 bits (108), Expect = 4e-06
Identities = 42/203 (20%), Positives = 81/203 (39%), Gaps = 38/203 (18%)
Query: 19 TPLVY---LNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMIS-------DAEAKGLITP 68
TP++ LN + + K E+ + S K R + + + + K ++T
Sbjct: 26 TPVLTSSILNQLTG---RNLFFKCELFQKTGSFKIRGALNAVRSLVPDALERKPKAVVTH 82
Query: 69 GESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDPAKGM 128
+SGN G L + A + I +P + +++ ++A+GA +V +P+
Sbjct: 83 --------SSGNHGQALTYAAKLEGIPAYIVVPQTAPDCKKLAIQAYGASIVYCEPS--D 132
Query: 129 KGAVQKAEEILAKTPNAYMLQQFENPANPKIHYE------TTGPELWKGSGGRIDALVSG 182
+ A+ + +T M+ + P T E+ +DALV
Sbjct: 133 ESRENVAKRVTEET-EGIMVHPNQEP-------AVIAGQGTIALEVLNQVPL-VDALVVP 183
Query: 183 IGTGGTITGAGKFLKEKNPNIKV 205
+G GG + G +K P++KV
Sbjct: 184 VGGGGMLAGIAITVKALKPSVKV 206
>2gn0_A Threonine dehydratase catabolic; TDCB, biodegradative threonine
deaminase, PLP, threonine DEH L-threonine metabolism;
HET: LLP; 1.70A {Salmonella typhimurium} PDB: 2gn1_A*
2gn2_A*
Length = 342
Score = 44.5 bits (106), Expect = 8e-06
Identities = 45/207 (21%), Positives = 76/207 (36%), Gaps = 29/207 (14%)
Query: 9 AKDVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMI---SDAE-AKG 64
K + I T + N C I K E M+ S K R ++ + ++AE KG
Sbjct: 31 KKRLAGKIYKTGMPRSNYFSERCKGEIFLKFENMQRTGSFKIRGAFNKLSSLTEAEKRKG 90
Query: 65 LITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLTDP 124
++ ++GN G++ A + MP + + AE+VL
Sbjct: 91 VVAC--------SAGNHAQGVSLSCAMLGIDGKVVMPKGAPKSKVAATCDYSAEVVLHG- 141
Query: 125 AKGMKGAVQKAEEILAKTPNAYMLQQFENPANPKIHYE------TTGPELWKGSGGRIDA 178
+ K E + +T + ++ + T G E+ + +D
Sbjct: 142 -DNFNDTIAKVSE-IVETEGRIFIPPYD-------DPKVIAGQGTIGLEIME-DLYDVDN 191
Query: 179 LVSGIGTGGTITGAGKFLKEKNPNIKV 205
++ IG GG I G +K NP IKV
Sbjct: 192 VIVPIGGGGLIAGIAIAIKSINPTIKV 218
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.7 bits (87), Expect = 0.002
Identities = 27/126 (21%), Positives = 40/126 (31%), Gaps = 36/126 (28%)
Query: 60 AEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLE------RRIILR 113
A+ G TPGE L G TG + A I + S E R+ I
Sbjct: 253 AKLLGF-TPGE--LRSYLKGATGHSQGLVTAV-----AIA--ETDSWESFFVSVRKAITV 302
Query: 114 AF--GAELVLTDPAKGMK-GAVQKAEEILAKTPNAYML-------QQFE------N---P 154
F G P + ++ + E P + ML +Q + N P
Sbjct: 303 LFFIGVRCYEAYPNTSLPPSILEDSLENNEGVP-SPMLSISNLTQEQVQDYVNKTNSHLP 361
Query: 155 ANPKIH 160
A ++
Sbjct: 362 AGKQVE 367
Score = 32.3 bits (73), Expect = 0.11
Identities = 31/190 (16%), Positives = 57/190 (30%), Gaps = 85/190 (44%)
Query: 52 IGYSMISDAEAKGLITP---------GE--------SVL-IEPTSGNTGI------GLAF 87
+ + D ++KGLI GE V+ IE + + G+
Sbjct: 1739 MEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIE-----SLVEVVFYRGMTM 1793
Query: 88 MAAAKQ-------YRLIITMPASMSLERRIILRAFGAELVLTDPAKGMKGAVQK-AEEIL 139
A + Y +I P ++ +F E A+Q E +
Sbjct: 1794 QVAVPRDELGRSNYGMIAINPGRVAA-------SFSQE------------ALQYVVERVG 1834
Query: 140 AKTPNAYMLQQFENPANPKIHYETTGPELWKGS----GGRIDALVSGIGTGGTITGAGKF 195
+T ++++ N Y + G + AL T+T F
Sbjct: 1835 KRT--GWLVE----IVN----YNV------ENQQYVAAGDLRAL-------DTVTNVLNF 1871
Query: 196 LKEKNPNIKV 205
+K + I +
Sbjct: 1872 IKLQ--KIDI 1879
Score = 30.8 bits (69), Expect = 0.38
Identities = 21/118 (17%), Positives = 35/118 (29%), Gaps = 34/118 (28%)
Query: 2 AVESSNIAKDVTELIGNTPLVYLNNIVNGCVARIAAKLEMMEPCSSVKDRIGYSMISDAE 61
AV + + +I P R+AA E V +R+G
Sbjct: 1796 AVPRDELGRSNYGMIAINP------------GRVAASFSQ-EALQYVVERVG------KR 1836
Query: 62 AKGLI------TPGESVLIEPTSGNTGIGL-AFMAAAKQYRL----IITMPASMSLER 108
L+ + + +G+ L +L II + S+SLE
Sbjct: 1837 TGWLVEIVNYNVENQQYVA---AGDL-RALDTVTNVLNFIKLQKIDIIELQKSLSLEE 1890
>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase,
cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A
{Streptomyces SP} PDB: 4a10_A
Length = 447
Score = 34.8 bits (80), Expect = 0.014
Identities = 28/144 (19%), Positives = 48/144 (33%), Gaps = 13/144 (9%)
Query: 54 YSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILR 113
Y M+ + + G+ VLI SG G + S ++ +R
Sbjct: 207 YRMLVS-DRGAQMKQGDIVLIWGASGGLGSYAIQFVKNGGGIPVAV---VSSAQKEAAVR 262
Query: 114 AFGAELVLTDPAKGMKGAVQK-AEEILAKTPNAYMLQQFENPANPKIHYETTGPELWKGS 172
A G +LV+ G+ + ++ L + P I +E TG + S
Sbjct: 263 ALGCDLVINRAELGITDDIADDPRRVVETGRKLAKLVVEKAGREPDIVFEHTGRVTFGLS 322
Query: 173 ------GGRIDALVSGIGTGGTIT 190
GG + + G +G T
Sbjct: 323 VIVARRGGTV--VTCGSSSGYLHT 344
>3krt_A Crotonyl COA reductase; structural genomics, protein structure
initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces
coelicolor} PDB: 3hzz_A
Length = 456
Score = 31.3 bits (71), Expect = 0.23
Identities = 30/146 (20%), Positives = 51/146 (34%), Gaps = 17/146 (11%)
Query: 54 YSMISDAEAKGLITPGESVLIEPTSGNTGIGLAFMAAAKQY--RLIITMPASMSLERRII 111
Y + G+ G++VLI SG G+G A I S ++ I
Sbjct: 215 YRQLVSRNGAGM-KQGDNVLIWGASG--GLGSYATQFALAGGANPICV---VSSPQKAEI 268
Query: 112 LRAFGAELVLTDPAKGMKGAVQKAEEILAKTPN-AYMLQQFENPANPKIHYETTGPELWK 170
RA GAE ++ A+G + + + + +++ + I +E G E +
Sbjct: 269 CRAMGAEAIIDRNAEGYRFWKDENTQDPKEWKRFGKRIRELTGGEDIDIVFEHPGRETFG 328
Query: 171 GS------GGRIDALVSGIGTGGTIT 190
S GG I +G
Sbjct: 329 ASVFVTRKGGTI--TTCASTSGYMHE 352
>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific]
1,mitochondrial; oxidoreductase, thioester reduction,
fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2
c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A
Length = 364
Score = 30.8 bits (70), Expect = 0.26
Identities = 14/79 (17%), Positives = 29/79 (36%), Gaps = 4/79 (5%)
Query: 66 ITPGESVLIEPTSGNTGIGLAF--MAAAKQYRLI-ITMPASMSLERRIILRAFGAELVLT 122
+TPG+ I+ G + +G + + I + E L+ GA V+T
Sbjct: 164 LTPGKDWFIQ-NGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGATQVIT 222
Query: 123 DPAKGMKGAVQKAEEILAK 141
+ + +E + +
Sbjct: 223 EDQNNSREFGPTIKEWIKQ 241
>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural
genomics, NPPSFA, natio project on protein structural
and functional analyses; 2.30A {Thermus thermophilus}
Length = 343
Score = 29.1 bits (66), Expect = 1.1
Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 7/60 (11%)
Query: 63 KGLITPGESVLIEPTSGNTGIGLAFMAAAKQY--RLIITMPASMSLERRIILRAFGAELV 120
K + PG+ VL+ G+ +A + AK + R+I T + S ++ +A GA+
Sbjct: 161 KLGVRPGDDVLVMAAGS--GVSVAAIQIAKLFGARVIAT---AGSEDKLRRAKALGADET 215
>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase,
oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A
{Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*
Length = 366
Score = 28.5 bits (64), Expect = 1.6
Identities = 11/91 (12%), Positives = 25/91 (27%), Gaps = 14/91 (15%)
Query: 32 VARIAAKLEMMEPCSSV-----KDRIGYSMISDAEAKGLITPGESVLIEPTSGNTGIGLA 86
+ I + +P + + + + VL+ G IG+
Sbjct: 142 IEDIGI---LAQPLADIEKSIEEILEVQKRVPVWTCDDGTLNCRKVLV---VGTGPIGVL 195
Query: 87 FMAAAKQY---RLIITMPASMSLERRIILRA 114
F + Y + +E+ +I
Sbjct: 196 FTLLFRTYGLEVWMANRREPTEVEQTVIEET 226
>1wma_A Carbonyl reductase [NADPH] 1; oxidoreductase; HET: AB3 NDP PE5 P33;
1.24A {Homo sapiens} SCOP: c.2.1.2 PDB: 3bhi_A* 3bhj_A*
3bhm_A* 2pfg_A* 1n5d_A* 2hrb_A*
Length = 276
Score = 28.1 bits (63), Expect = 1.8
Identities = 19/75 (25%), Positives = 29/75 (38%), Gaps = 26/75 (34%)
Query: 77 TSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAELVLT--DPAKGMKGAVQK 134
T GN GIGL A + + R F ++VLT D +G AV
Sbjct: 10 TGGNKGIGL---AIVRD-----------------LCRLFSGDVVLTARDVTRGQA-AV-- 46
Query: 135 AEEILAKTPNAYMLQ 149
+++ A+ + Q
Sbjct: 47 -QQLQAEGLSPRFHQ 60
>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics,
PSI, protein STRU initiative; 2.66A {Mycobacterium
tuberculosis} SCOP: c.2.1.1
Length = 198
Score = 27.9 bits (63), Expect = 2.0
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 66 ITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAFGAE 118
++PGE VLI +G G+G+A ++ AK I A S +R +L G E
Sbjct: 36 LSPGERVLIHSATG--GVGMAAVSIAKMIGARIYTTAG-SDAKREMLSRLGVE 85
>3uog_A Alcohol dehydrogenase; structural genomics, protein structure
initiative, PSI-biolo YORK structural genomics research
consortium; 2.20A {Sinorhizobium meliloti 1021}
Length = 363
Score = 27.6 bits (62), Expect = 2.9
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 8/60 (13%)
Query: 63 KGLITPGESVLIEPTSGNTGIGLAFMAAAKQY--RLIITMPASMSLERRIILRAFGAELV 120
KG + G+ V+++ T G+ L + AK +I+T S S E+ A GA+
Sbjct: 184 KGHLRAGDRVVVQGTG---GVALFGLQIAKATGAEVIVT---SSSREKLDRAFALGADHG 237
>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate
aminotransferase; HET: PGU; 1.67A {Thermus thermophilus}
PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*
Length = 397
Score = 27.5 bits (62), Expect = 3.6
Identities = 13/78 (16%), Positives = 22/78 (28%), Gaps = 30/78 (38%)
Query: 62 AKGLITPGESVLIE-PT-------------------SGNTGI---GLAFMAAAKQYRLII 98
K + G VL+E P+ +G G L + ++ R +
Sbjct: 108 GKVFLDEGSPVLLEAPSYMGAIQAFRLQGPRFLTVPAGEEGPDLDALEEVLKRERPRFLY 167
Query: 99 TMP-------ASMSLERR 109
+P L R
Sbjct: 168 LIPSFQNPTGGLTPLPAR 185
>2cnd_A NADH-dependent nitrate reductase; nitrate assimilating enzyme,
oxidoreductase, nitrogenous acceptor; HET: FAD; 2.50A
{Zea mays} SCOP: b.43.4.2 c.25.1.1 PDB: 1cnf_A* 1cne_A*
Length = 270
Score = 27.1 bits (60), Expect = 4.3
Identities = 9/30 (30%), Positives = 11/30 (36%), Gaps = 4/30 (13%)
Query: 152 ENPANPKIHY----ETTGPELWKGSGGRID 177
E P K+ Y E WK S G +
Sbjct: 193 EYPDRLKVWYVIDQVKRPEEGWKYSVGFVT 222
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme,
megasynthase, fatty acid synthesis; 3.2A {Sus scrofa}
PDB: 2vz9_A*
Length = 2512
Score = 27.2 bits (60), Expect = 4.7
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 64 GLITPGESVLIEPTSGNTGIGLAFMAAAKQYRLIITMPASMSLERRIILRAF 115
G + PGESVLI SG+ G+G A +A A + + +R + F
Sbjct: 1663 GRMQPGESVLIH--SGSGGVGQAAIAIALSRGCRVFTTVGSAEKRAYLQARF 1712
>1wd5_A Hypothetical protein TT1426; structural genomics, riken structural
genomics/proteomics initiative, RSGI, unknown function;
HET: MES; 2.00A {Thermus thermophilus} SCOP: c.61.1.1
Length = 208
Score = 26.1 bits (57), Expect = 7.4
Identities = 9/29 (31%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 174 GRIDALV-SGIGTGGTITGAGKFLKEKNP 201
GR LV G+ TG ++ A + ++ P
Sbjct: 120 GRDVVLVDDGVATGASMEAALSVVFQEGP 148
>3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2,
protein structur initiative; 1.90A {Porphyromonas
gingivalis}
Length = 343
Score = 26.1 bits (58), Expect = 8.2
Identities = 9/35 (25%), Positives = 14/35 (40%), Gaps = 4/35 (11%)
Query: 105 SLERRIILRAFGAELVLTDPAKGM-KGAVQKAEEI 138
++ + + L L DP +G AEEI
Sbjct: 23 NMAQTAAMMRLTPNLCLYDPFAVGLEG---VAEEI 54
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.133 0.374
Gapped
Lambda K H
0.267 0.0650 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,199,121
Number of extensions: 197051
Number of successful extensions: 509
Number of sequences better than 10.0: 1
Number of HSP's gapped: 465
Number of HSP's successfully gapped: 66
Length of query: 206
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 117
Effective length of database: 4,216,824
Effective search space: 493368408
Effective search space used: 493368408
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.1 bits)