Query 028620
Match_columns 206
No_of_seqs 110 out of 420
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 14:21:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028620.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028620hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0440 Cell cycle-associated 100.0 1.3E-79 2.8E-84 523.0 18.4 196 9-206 37-242 (243)
2 KOG1903 Cell cycle-associated 100.0 2.6E-75 5.7E-80 477.8 16.8 198 7-204 10-217 (217)
3 PF03637 Mob1_phocein: Mob1/ph 100.0 2.2E-74 4.9E-79 479.2 16.7 166 29-196 1-175 (175)
4 KOG1852 Cell cycle-associated 100.0 4E-35 8.8E-40 240.6 6.6 173 15-195 26-210 (223)
5 PF15192 TMEM213: TMEM213 fami 43.2 11 0.00023 27.7 0.7 29 42-70 33-65 (82)
6 PF12431 CitT: Transcriptional 34.9 35 0.00076 20.4 1.9 25 29-53 3-29 (30)
7 cd00397 DNA_BRE_C DNA breaking 31.2 1.7E+02 0.0037 21.7 5.8 32 117-148 84-115 (164)
8 PF10746 Phage_holin_6: Phage 28.3 31 0.00068 24.7 1.1 19 49-67 29-48 (66)
9 PF04417 DUF501: Protein of un 27.2 1.7E+02 0.0036 23.6 5.3 74 123-196 16-90 (139)
10 KOG3261 Uncharacterized conser 26.6 53 0.0011 27.9 2.3 18 142-159 121-139 (202)
11 KOG2321 WD40 repeat protein [G 25.1 56 0.0012 32.7 2.5 55 45-100 12-78 (703)
12 PF10441 Urb2: Urb2/Npa2 famil 23.2 3.2E+02 0.0069 23.1 6.6 65 106-182 28-92 (223)
13 PHA03074 late transcription fa 23.0 1.1E+02 0.0023 26.8 3.5 85 99-185 58-146 (225)
No 1
>KOG0440 consensus Cell cycle-associated protein Mob1-1 [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=1.3e-79 Score=522.97 Aligned_cols=196 Identities=64% Similarity=1.106 Sum_probs=190.5
Q ss_pred CCCccCCCCCCCCCCccchHHHHHHHHhcC-CchhhhhcCCCCCCchhHHhh---------hhhhhhccccCCCCCCCCC
Q 028620 9 NQRTFRPKKSAPSGSKGAQLRKHIDATLGS-GNLREAVRLPPGEDLNEWLAV---------NLLYGTLTEFCTAENCPTM 78 (206)
Q Consensus 9 ~~~t~~~~~~~~~~~~~~~l~~~~~~~l~~-g~l~~~V~lP~g~d~neWlA~---------n~l~~~l~e~CT~~tCP~M 78 (206)
+.+++++++..+++++++++.++++++|++ |||+++|+||+|+|+|||||+ |+|||+|+||||+++||.|
T Consensus 37 ~~~~~~~k~~~~~~s~~~~~~~~~e~~l~s~g~l~~aV~LP~G~D~nEWlA~nt~~fF~qvN~lYGtitEfCT~~sCp~M 116 (243)
T KOG0440|consen 37 AAKPFRKKEASASLSVRPQAKYLAEATLGSSGNLREAVKLPEGEDLNEWLAVNTLDFFNQVNLLYGTITEFCTQQSCPHM 116 (243)
T ss_pred ccccccccccCcccCccHHHHHHHHHhhcccccHHHHhcCCCCCchhhHHHHhHHHHHHHHHHHHHHHHHHcCcccCccc
Confidence 456788888899999999999999999999 999999999999999999999 9999999999999999999
Q ss_pred CCCCCceeEeccCCCCCCCcccChHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHHHhhhhhH
Q 028620 79 TAGPKYEYRWADGVQIKKPIEVSAPKYVEYLMDWIESQLDDESIFPQKLGAPFPSNFKEVVKTIFKRLFRVYAHIYHSHF 158 (206)
Q Consensus 79 sAg~~~~ylw~d~~~~~kp~~~sA~~Yi~~~~~w~~~~l~de~iFPt~~~~~FP~~F~~~v~~I~rrLfRVyaHiY~~H~ 158 (206)
+||++++|+|+|+. +||++||||||||++|+||+++++||+|||||+|.+||+||.+.||+|+|||||||||||++||
T Consensus 117 sag~~yeY~W~D~~--~kp~~~sApqYId~lmtw~q~~~dde~iFPtK~g~~FP~nF~~~vk~Ilr~lFrvyAHiY~~Hf 194 (243)
T KOG0440|consen 117 SAGPNYEYLWADEK--GKPVRVSAPQYIDYLMTWCQNQLDDENIFPTKYGNPFPGNFESVVKKILRRLFRVYAHIYHSHF 194 (243)
T ss_pred cCCCcceeeeeccc--CCccccCchHHHHHHHHHHHHhccccccCccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999965 7999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcchhHHHHHHHHHHHHHHHhCCCCcCCcCchHHHHHHhhcCC
Q 028620 159 QKIVSLKEEAHLNTCFKHFILFTCEFGLIDKKELGPLQELIDSIIVPY 206 (206)
Q Consensus 159 ~~~~~l~~e~hlNt~fkhF~~F~~eF~Li~~kel~pl~~li~~l~~~~ 206 (206)
+.|++|++++|||++||||++|++||+|||+||++||++||+.|..+|
T Consensus 195 ~~i~~L~l~ahlNt~F~Hf~~f~~eF~LiD~kE~aPl~~Li~~l~~~d 242 (243)
T KOG0440|consen 195 DEIVALQLEAHLNTSFKHFILFAREFQLLDKKETAPLLELIESLLSQD 242 (243)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHhccCHHhhhhHHHHHHHHhccC
Confidence 999999999999999999999999999999999999999999998775
No 2
>KOG1903 consensus Cell cycle-associated protein [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=2.6e-75 Score=477.80 Aligned_cols=198 Identities=55% Similarity=1.070 Sum_probs=194.8
Q ss_pred CCCCCccCCCCCCCCCCccchHHHHHHHHhcCC-chhhhhcCCCCCCchhHHhh---------hhhhhhccccCCCCCCC
Q 028620 7 GRNQRTFRPKKSAPSGSKGAQLRKHIDATLGSG-NLREAVRLPPGEDLNEWLAV---------NLLYGTLTEFCTAENCP 76 (206)
Q Consensus 7 ~~~~~t~~~~~~~~~~~~~~~l~~~~~~~l~~g-~l~~~V~lP~g~d~neWlA~---------n~l~~~l~e~CT~~tCP 76 (206)
..+.+|+||+|++++|+.||+|++-+|++|.+| |++.+|+||+|+|.|+|+|+ |++||+++|+||++|||
T Consensus 10 fnK~KTFRPkkkF~~GT~Rf~LhK~AqAsL~sG~dLr~aV~LPpgEn~nDW~AVHvVDFFNRiNLiYGTise~Cte~sCP 89 (217)
T KOG1903|consen 10 FNKDKTFRPKKKFEPGTQRFELHKKAQASLNSGLDLRSAVRLPPGENLNDWLAVHVVDFFNRINLIYGTISEFCTETSCP 89 (217)
T ss_pred HccCCccCCCCCCCCCceeeehHHHHHHHHhcCcchHHhccCCCCCCccceeeeehhhhhhhhHhhhhhHhhhccccCCC
Confidence 468899999999999999999999999999999 99999999999999999999 99999999999999999
Q ss_pred CCCCCCCceeEeccCCCCCCCcccChHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHHHhhhh
Q 028620 77 TMTAGPKYEYRWADGVQIKKPIEVSAPKYVEYLMDWIESQLDDESIFPQKLGAPFPSNFKEVVKTIFKRLFRVYAHIYHS 156 (206)
Q Consensus 77 ~MsAg~~~~ylw~d~~~~~kp~~~sA~~Yi~~~~~w~~~~l~de~iFPt~~~~~FP~~F~~~v~~I~rrLfRVyaHiY~~ 156 (206)
+|++|+.++|+|+|+..|+||+.+|||+||+++||||+.+||||.+||+..|+|||+||.++|++|+.||||||.|+|.|
T Consensus 90 ~MsGG~rYEY~WqD~~~ykkPt~L~Ap~Ym~lLMDWIE~~INnE~vFPt~~~vpFPKnF~qi~~KILtRLFRVFVHVYIH 169 (217)
T KOG1903|consen 90 VMSGGPRYEYRWQDERKYKKPTALSAPRYMALLMDWIEVQINNEEVFPTSVGVPFPKNFLQICKKILTRLFRVFVHVYIH 169 (217)
T ss_pred cccCCCcceeEecccccccCCccCCcHHHHHHHHHHHHHhccccccccccCCCCCcHhHHHHHHHHHHHHHHHHhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhhcchhHHHHHHHHHHHHHHHhCCCCcCCcCchHHHHHHhhc
Q 028620 157 HFQKIVSLKEEAHLNTCFKHFILFTCEFGLIDKKELGPLQELIDSIIV 204 (206)
Q Consensus 157 H~~~~~~l~~e~hlNt~fkhF~~F~~eF~Li~~kel~pl~~li~~l~~ 204 (206)
||+.+.++|+|+|.|||||||++|++||+|||.|||+||+|+.++++.
T Consensus 170 HFDri~~mGaE~HvNtcYKHFYyFv~Ef~li~~kELEpLkeMT~R~c~ 217 (217)
T KOG1903|consen 170 HFDRILSMGAEAHVNTCYKHFYYFVTEFGLIDTKELEPLKEMTERICH 217 (217)
T ss_pred hhHHHHHhccHHHHHHHHHHHHHHhhhccccchhhcchHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999873
No 3
>PF03637 Mob1_phocein: Mob1/phocein family; InterPro: IPR005301 Mob1 is an essential Saccharomyces cerevisiae (Baker's yeast) protein, identified from a two-hybrid screen, that binds Mps1p, a protein kinase essential for spindle pole body duplication and mitotic checkpoint regulation. Mob1 contains no known structural motifs; however MOB1 is a member of a conserved gene family and shares sequence similarity with a nonessential yeast gene, MOB2. Mob1 is a phosphoprotein in vivo and a substrate for the Mps1p kinase in vitro. Conditional alleles of MOB1 cause a late nuclear division arrest at restrictive temperature []. This family also includes phocein Q9QYW3 from SWISSPROT, a rat protein that by yeast two hybrid interacts with striatin [].; PDB: 2HJN_A 1PI1_A 1R3B_A.
Probab=100.00 E-value=2.2e-74 Score=479.21 Aligned_cols=166 Identities=67% Similarity=1.215 Sum_probs=150.7
Q ss_pred HHHHHHHhcCCchhhhhcCCCCCCchhHHhh---------hhhhhhccccCCCCCCCCCCCCCCceeEeccCCCCCCCcc
Q 028620 29 RKHIDATLGSGNLREAVRLPPGEDLNEWLAV---------NLLYGTLTEFCTAENCPTMTAGPKYEYRWADGVQIKKPIE 99 (206)
Q Consensus 29 ~~~~~~~l~~g~l~~~V~lP~g~d~neWlA~---------n~l~~~l~e~CT~~tCP~MsAg~~~~ylw~d~~~~~kp~~ 99 (206)
|++++++|++||++++|+||+|+|+|||||+ |++||+|+|+||++|||+|+||++|+|+|+|++ ++|++
T Consensus 1 ~~~~~~~l~~~~l~~~V~lP~g~d~~eWla~~~~~f~~~in~l~~~v~e~Ct~~tCP~Msag~~~~Ylw~d~~--~kp~~ 78 (175)
T PF03637_consen 1 QQYVQATLGKGNLRTLVKLPKGVDENEWLAVHTVDFFNEINLLYGVVSEFCTPETCPTMSAGPNWEYLWADHK--KKPVK 78 (175)
T ss_dssp HHHHHHHCCGG-HHHHCS-STT--HHHHHHHHHHHHHHHHHHHHHHHGGGS-TTTTSSEESSTTCEE-BSSST--TS-BS
T ss_pred CHHHHHHHhcCCHHHHhcCcCCCChhhHHHHhhHHHHHHHHHHHhhccCcCCcccCcCccCCccceeeeeccC--CCCcc
Confidence 6899999999999999999999999999999 999999999999999999999999999999976 68999
Q ss_pred cChHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHHHhhhhhHHHHHhhcchhHHHHHHHHHHH
Q 028620 100 VSAPKYVEYLMDWIESQLDDESIFPQKLGAPFPSNFKEVVKTIFKRLFRVYAHIYHSHFQKIVSLKEEAHLNTCFKHFIL 179 (206)
Q Consensus 100 ~sA~~Yi~~~~~w~~~~l~de~iFPt~~~~~FP~~F~~~v~~I~rrLfRVyaHiY~~H~~~~~~l~~e~hlNt~fkhF~~ 179 (206)
||||+||+++|+|++++|+|+++|||+.|++||++|.++|++|||||||||||||++||+.|.++|+++|||++||||++
T Consensus 79 ~~A~~Yi~~~l~w~~~~l~d~~iFPt~~~~~fp~~f~~~v~~I~rrLfRvyaHiY~~H~~~~~~l~~~~hln~~F~hF~~ 158 (175)
T PF03637_consen 79 CSAPQYIDHLLDWIQSQLNDEKIFPTKPGVPFPKNFKKTVKKIFRRLFRVYAHIYHHHFEQFVELELEAHLNTCFKHFVL 158 (175)
T ss_dssp --HHHHHHHHHHHHHHHHTSTTTSSSSTTS-TTTTHHHHHHHHHHHHHHHHHHHHHHCHHHHHHTT-HHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHccCcccCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCcCCcCchH
Q 028620 180 FTCEFGLIDKKELGPLQ 196 (206)
Q Consensus 180 F~~eF~Li~~kel~pl~ 196 (206)
|++||+||++||++||+
T Consensus 159 f~~eF~Li~~~el~pL~ 175 (175)
T PF03637_consen 159 FAREFDLIDEKELEPLQ 175 (175)
T ss_dssp HHHHHT-S-GGGGGGGH
T ss_pred HHHHhCCCCHHHhcccC
Confidence 99999999999999996
No 4
>KOG1852 consensus Cell cycle-associated protein [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=4e-35 Score=240.59 Aligned_cols=173 Identities=22% Similarity=0.408 Sum_probs=161.6
Q ss_pred CCCCCCCCCccchHHHHHHHHhcCC--chhhhhcCCCCCCchhHHhh---------hhhhhhccccCCCCCCCCCCCCCC
Q 028620 15 PKKSAPSGSKGAQLRKHIDATLGSG--NLREAVRLPPGEDLNEWLAV---------NLLYGTLTEFCTAENCPTMTAGPK 83 (206)
Q Consensus 15 ~~~~~~~~~~~~~l~~~~~~~l~~g--~l~~~V~lP~g~d~neWlA~---------n~l~~~l~e~CT~~tCP~MsAg~~ 83 (206)
|..+++++.+...+|+||+++|+++ |+..+..+|+|.|++.|-++ |.|...++..|.++||..|+|++.
T Consensus 26 pde~feemdstlavqqyiqq~ikadpsnv~~iltppe~qdegvwkyehlrqfc~elnglav~lq~ec~p~tctqmtateq 105 (223)
T KOG1852|consen 26 PDESFEEMDSTLAVQQYIQQNIKADPSNVDKILTPPEGQDEGVWKYEHLRQFCLELNGLAVKLQSECHPDTCTQMTATEQ 105 (223)
T ss_pred CcchHHHHHhHHHHHHHHHHHhccCchhHHHhcCCCcccccchhhHHHHHHHHHHhhhHHHHHhcccCchHhhhhhhHhH
Confidence 4557888899999999999999997 99999999999999999999 888888999999999999999999
Q ss_pred ceeEeccCCCCCCCcccChHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHHHhhhhhHHHHHh
Q 028620 84 YEYRWADGVQIKKPIEVSAPKYVEYLMDWIESQLDDESIFPQKLGAPFPSNFKEVVKTIFKRLFRVYAHIYHSHFQKIVS 163 (206)
Q Consensus 84 ~~ylw~d~~~~~kp~~~sA~~Yi~~~~~w~~~~l~de~iFPt~~~~~FP~~F~~~v~~I~rrLfRVyaHiY~~H~~~~~~ 163 (206)
|.|||+.|+ .|.+|||++|..|++|.+..+||+.+.||++.++. +..+..+.+++||+||||+|+|+||+..|.+
T Consensus 106 wiflcaahk---tpkecpaidytrhtldgaacllnsnkyfpsrvsik--essv~klgsvcrrvyrifsha~fhhr~ifde 180 (223)
T KOG1852|consen 106 WIFLCAAHK---TPKECPAIDYTRHTLDGAACLLNSNKYFPSRVSIK--ESSVAKLGSVCRRVYRIFSHAYFHHRKIFDE 180 (223)
T ss_pred HHhhhhhcC---CcccCCcccchhhccccccccccCCccCCcccchh--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999985 89999999999999999999999999999999885 7789999999999999999999999999999
Q ss_pred hcchhHHHHHHHHHHHHHHHhCCCCcCCc-Cch
Q 028620 164 LKEEAHLNTCFKHFILFTCEFGLIDKKEL-GPL 195 (206)
Q Consensus 164 l~~e~hlNt~fkhF~~F~~eF~Li~~kel-~pl 195 (206)
.+.|+||+. +|..|+..|+|++.+.| .|+
T Consensus 181 fe~etylc~---rft~~v~kynlms~e~livpi 210 (223)
T KOG1852|consen 181 FENETYLCH---RFTKFVSKYNLMSKENLIVPI 210 (223)
T ss_pred hhhhhHHHH---HHHHHHHhhhhccccceeeec
Confidence 999999987 57777899999999886 564
No 5
>PF15192 TMEM213: TMEM213 family
Probab=43.20 E-value=11 Score=27.75 Aligned_cols=29 Identities=31% Similarity=0.493 Sum_probs=23.4
Q ss_pred hhhhcCCCCCCchhHHhh----hhhhhhccccC
Q 028620 42 REAVRLPPGEDLNEWLAV----NLLYGTLTEFC 70 (206)
Q Consensus 42 ~~~V~lP~g~d~neWlA~----n~l~~~l~e~C 70 (206)
..+.-++.|+|+.-|||. ++.+-++--.|
T Consensus 33 ~Aa~CC~~gvDeyGWIAAAVGWSLwFLTLILLC 65 (82)
T PF15192_consen 33 QAARCCHAGVDEYGWIAAAVGWSLWFLTLILLC 65 (82)
T ss_pred HHHHHhccCCchhhHHHHHHhHHHHHHHHHHHH
Confidence 567778999999999998 77777665555
No 6
>PF12431 CitT: Transcriptional regulator
Probab=34.91 E-value=35 Score=20.41 Aligned_cols=25 Identities=36% Similarity=0.453 Sum_probs=13.8
Q ss_pred HHHHHHHhcCC--chhhhhcCCCCCCc
Q 028620 29 RKHIDATLGSG--NLREAVRLPPGEDL 53 (206)
Q Consensus 29 ~~~~~~~l~~g--~l~~~V~lP~g~d~ 53 (206)
|..+.+.+... .-...-.||+|+|.
T Consensus 3 Q~~VD~lf~~~~~~~~~~~~LPKGID~ 29 (30)
T PF12431_consen 3 QSDVDALFNSQAKEESPAERLPKGIDE 29 (30)
T ss_pred HHHHHHHHCcccCCCCCccCCCCCccc
Confidence 34455555443 11222669999985
No 7
>cd00397 DNA_BRE_C DNA breaking-rejoining enzymes, C-terminal catalytic domain. The DNA breaking-rejoining enzyme superfamily includes type IB topoisomerases and tyrosine recombinases that share the same fold in their catalytic domain containing six conserved active site residues. The best-studied members of this diverse superfamily include human topoisomerase I, the bacteriophage lambda integrase, the bacteriophage P1 Cre recombinase, the yeast Flp recombinase and the bacterial XerD/C recombinases. Their overall reaction mechanism is essentially identical and involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA. The enzymes differ in that topoisomerases cleave and then rejoin the same 5' and 3' termini, whereas a site-specific recombinase transfers a 5' hydroxyl gener
Probab=31.24 E-value=1.7e+02 Score=21.69 Aligned_cols=32 Identities=38% Similarity=0.526 Sum_probs=21.3
Q ss_pred hCCCCCCCCCCCCCCCcchHHHHHHHHHHHHH
Q 028620 117 LDDESIFPQKLGAPFPSNFKEVVKTIFKRLFR 148 (206)
Q Consensus 117 l~de~iFPt~~~~~FP~~F~~~v~~I~rrLfR 148 (206)
.+++.+|+...+.+........+..+++++..
T Consensus 84 ~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (164)
T cd00397 84 GDEEYLFPSRRGGPAATLSRRNVKRIFKAAGR 115 (164)
T ss_pred CCCCceeecCCCCCccCCcHHHHHHHHHHHHH
Confidence 46788999987766554455566666666554
No 8
>PF10746 Phage_holin_6: Phage holin family 6; InterPro: IPR019682 This entry represents a protein conserved in Caudovirales (known as tailed bacteriophages). Holins are a diverse family of proteins that cause bacterial membrane lysis during late-protein synthesis.
Probab=28.33 E-value=31 Score=24.67 Aligned_cols=19 Identities=37% Similarity=0.712 Sum_probs=15.1
Q ss_pred CCCCchhHHhh-hhhhhhcc
Q 028620 49 PGEDLNEWLAV-NLLYGTLT 67 (206)
Q Consensus 49 ~g~d~neWlA~-n~l~~~l~ 67 (206)
-|+..|||++. .++|-.++
T Consensus 29 ~GLslneWfyiati~YtvlQ 48 (66)
T PF10746_consen 29 WGLSLNEWFYIATIAYTVLQ 48 (66)
T ss_pred cCCCHHHHHHHHHHHHHHHH
Confidence 69999999999 66666554
No 9
>PF04417 DUF501: Protein of unknown function (DUF501); InterPro: IPR007511 This is a family of uncharacterised bacterial proteins.
Probab=27.16 E-value=1.7e+02 Score=23.57 Aligned_cols=74 Identities=20% Similarity=0.170 Sum_probs=55.0
Q ss_pred CC-CCCCCCCCcchHHHHHHHHHHHHHHHHHhhhhhHHHHHhhcchhHHHHHHHHHHHHHHHhCCCCcCCcCchH
Q 028620 123 FP-QKLGAPFPSNFKEVVKTIFKRLFRVYAHIYHSHFQKIVSLKEEAHLNTCFKHFILFTCEFGLIDKKELGPLQ 196 (206)
Q Consensus 123 FP-t~~~~~FP~~F~~~v~~I~rrLfRVyaHiY~~H~~~~~~l~~e~hlNt~fkhF~~F~~eF~Li~~kel~pl~ 196 (206)
.| ...|.|||.-|--++..+.+.+-|+=++=...-.+...+-+.+-.--..-.|--+-+.+-.|+++++.+=++
T Consensus 16 ~P~l~~g~PFPTlfwLtcP~L~~~isrLE~~G~i~~l~~~l~~d~~l~~~~~~aH~~y~~~R~~ll~~~~~~~~~ 90 (139)
T PF04417_consen 16 APRLVDGKPFPTLFWLTCPYLVKAISRLEAEGGIAELEERLAEDEELAEAYRRAHRRYAALRWSLLSEEEREFLE 90 (139)
T ss_pred ccCCCCCccCCccHhhcCHHHHHHHHHHHhcCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhcchhHHHHHH
Confidence 46 667899999999999999999999988888777777666544411111235888899999999887754433
No 10
>KOG3261 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.57 E-value=53 Score=27.90 Aligned_cols=18 Identities=50% Similarity=0.901 Sum_probs=14.3
Q ss_pred HHHHHHHHH-HHhhhhhHH
Q 028620 142 IFKRLFRVY-AHIYHSHFQ 159 (206)
Q Consensus 142 I~rrLfRVy-aHiY~~H~~ 159 (206)
=|||-|||. |-.|+.||.
T Consensus 121 ~frRkFRVI~a~~y~k~fa 139 (202)
T KOG3261|consen 121 EFRRKFRVIHAPLYFKHFA 139 (202)
T ss_pred HHHhheeeeccHHHHHHhh
Confidence 589999975 778888874
No 11
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=25.07 E-value=56 Score=32.68 Aligned_cols=55 Identities=22% Similarity=0.412 Sum_probs=41.4
Q ss_pred hcCCCCCCchhHHhh------------hhhhhhccccCCCCCCCCCCCCCCceeEeccCCCCCCCccc
Q 028620 45 VRLPPGEDLNEWLAV------------NLLYGTLTEFCTAENCPTMTAGPKYEYRWADGVQIKKPIEV 100 (206)
Q Consensus 45 V~lP~g~d~neWlA~------------n~l~~~l~e~CT~~tCP~MsAg~~~~ylw~d~~~~~kp~~~ 100 (206)
..+-.|-.+.+||+- .--...|++|=-++.|-.|+.++.-+|+|+.+. |++.++|
T Consensus 12 YnvS~~kslP~Wls~r~kR~lkkd~~~~~rieLiQdfe~p~ast~ik~s~DGqY~lAtG~-YKP~ikv 78 (703)
T KOG2321|consen 12 YNVSAGKSLPDWLSDRRKRQLKKDVDYRQRIELIQDFEMPTASTRIKVSPDGQYLLATGT-YKPQIKV 78 (703)
T ss_pred EEeecCCCchhhhhhHHHHHHhhchHHHHHHHHHHhcCCccccceeEecCCCcEEEEecc-cCCceEE
Confidence 344477888899996 222335788888889999999999999999874 6666654
No 12
>PF10441 Urb2: Urb2/Npa2 family; InterPro: IPR018849 This entry represents a conserved domain found towards the C terminus of proteins involved in ribosome biogenesis, such as the Urb2 protein from yeast [].
Probab=23.18 E-value=3.2e+02 Score=23.06 Aligned_cols=65 Identities=14% Similarity=0.195 Sum_probs=45.3
Q ss_pred HHHHHHHHHHhhCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHHHhhhhhHHHHHhhcchhHHHHHHHHHHHHHH
Q 028620 106 VEYLMDWIESQLDDESIFPQKLGAPFPSNFKEVVKTIFKRLFRVYAHIYHSHFQKIVSLKEEAHLNTCFKHFILFTC 182 (206)
Q Consensus 106 i~~~~~w~~~~l~de~iFPt~~~~~FP~~F~~~v~~I~rrLfRVyaHiY~~H~~~~~~l~~e~hlNt~fkhF~~F~~ 182 (206)
|+.++..+.....+.. +....+....||-++.++..+|-.+|+..+.. -.+++..++...+.-..
T Consensus 28 ie~~l~~~~~~~~~~~----------~~~~~~~~~~if~~~~~ll~~il~~hr~~l~~--r~hll~~~l~~LL~~l~ 92 (223)
T PF10441_consen 28 IEQILSILSTLFSSLR----------NTLSADSSPSIFISLCRLLSSILRHHRFKLSG--RFHLLLSVLQRLLRCLF 92 (223)
T ss_pred HHHHHHHHHHHHcccc----------cccccchhHHHHHHHHHHHHHHHHHhHHHHcC--CChHHHHHHHHHHHHHH
Confidence 5666666666665544 23345566788888999999999999998864 36777777766654433
No 13
>PHA03074 late transcription factor VLTF-3; Provisional
Probab=23.00 E-value=1.1e+02 Score=26.77 Aligned_cols=85 Identities=15% Similarity=0.292 Sum_probs=58.1
Q ss_pred ccChHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCcchHHHH----HHHHHHHHHHHHHhhhhhHHHHHhhcchhHHHHHH
Q 028620 99 EVSAPKYVEYLMDWIESQLDDESIFPQKLGAPFPSNFKEVV----KTIFKRLFRVYAHIYHSHFQKIVSLKEEAHLNTCF 174 (206)
Q Consensus 99 ~~sA~~Yi~~~~~w~~~~l~de~iFPt~~~~~FP~~F~~~v----~~I~rrLfRVyaHiY~~H~~~~~~l~~e~hlNt~f 174 (206)
+++-.|=.+.+.+-...++++..+=+......|=.+|.+.= ++=+|..|-+.-|.=-.-.. + .-+--.-++-.|
T Consensus 58 rlls~qcs~~ii~ell~lm~kn~i~~~didan~vs~fLK~~~~inkKdYklvfeiiN~~~~e~ln-L-ttekInei~eIF 135 (225)
T PHA03074 58 RLLSNQCSGEIISELLELMNKNQISTKDVDANFVSSFLKAKERINKKDYKLVFEIINQVKDEKLN-L-TTEKINEVVEIF 135 (225)
T ss_pred HHHHhHhhHHHHHHHHHHHHHccCChhhhhHHHHHHHHHHHHhcCchhHHHHHHHHHHhhhhccc-c-cHHHHHHHHHHH
Confidence 45556777778888888888888888877777777776655 45577777776665332222 1 112234567889
Q ss_pred HHHHHHHHHhC
Q 028620 175 KHFILFTCEFG 185 (206)
Q Consensus 175 khF~~F~~eF~ 185 (206)
+||+.|+.|..
T Consensus 136 k~lvfF~qent 146 (225)
T PHA03074 136 KHLVFFCQENT 146 (225)
T ss_pred HHHHHHHhccC
Confidence 99999999864
Done!