Query 028620
Match_columns 206
No_of_seqs 110 out of 420
Neff 5.6
Searched_HMMs 29240
Date Tue Mar 26 00:07:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028620.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028620hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2hjn_A MPS1 binder 1, maintena 100.0 2E-79 6.7E-84 528.0 20.2 197 8-205 29-236 (236)
2 1pi1_A MOB1A; mitotic EXIT net 100.0 4.5E-78 1.5E-82 504.1 16.8 173 33-205 2-183 (185)
3 1ae9_A Lambda integrase; DNA r 32.7 51 0.0018 24.3 4.3 31 115-148 88-118 (179)
4 3ee1_A Effector protein VIRA; 21.1 29 0.001 29.8 1.0 44 98-146 147-190 (400)
5 2kwv_A RAD30 homolog B, DNA po 16.0 48 0.0016 21.3 0.9 20 40-59 5-24 (48)
6 3g46_A Globin-1; oxygen transp 13.5 3.1E+02 0.011 20.1 5.2 28 134-161 28-57 (146)
7 1z19_A Integrase; protein-DNA 13.5 2.2E+02 0.0076 22.0 4.5 31 115-148 191-221 (283)
8 4aya_A DNA-binding protein inh 11.5 1.6E+02 0.0053 21.5 2.7 25 101-125 68-92 (97)
9 4hrt_A Globin-2 A chain; oxyge 10.7 4.5E+02 0.015 19.3 5.3 26 135-160 30-57 (150)
10 3c9q_A Uncharacterized protein 10.4 15 0.00053 30.5 -3.5 42 95-159 101-143 (205)
No 1
>2hjn_A MPS1 binder 1, maintenance of ploidy protein MOB1; homodimer, cell cycle; 2.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-79 Score=528.02 Aligned_cols=197 Identities=47% Similarity=0.870 Sum_probs=175.9
Q ss_pred CCCCccCCCCCCCCCCccchHHHHHHHHhcCC-chhhhhcCCCCCCchhHHhh---------hhhhhhccccCCCCCCCC
Q 028620 8 RNQRTFRPKKSAPSGSKGAQLRKHIDATLGSG-NLREAVRLPPGEDLNEWLAV---------NLLYGTLTEFCTAENCPT 77 (206)
Q Consensus 8 ~~~~t~~~~~~~~~~~~~~~l~~~~~~~l~~g-~l~~~V~lP~g~d~neWlA~---------n~l~~~l~e~CT~~tCP~ 77 (206)
++++++...+..++|+++|+++++++++|++| |++++|++|+|+|+|||||+ |+|||+|+|+||++|||+
T Consensus 29 ~~~~~~~~~~~~~~g~~~~~l~~~~~~~l~~g~~l~~~V~lP~g~D~neWlA~h~~dFfn~in~lyg~ise~CT~~tCP~ 108 (236)
T 2hjn_A 29 SHQKPFLQPQAGTTVTTHQDIKQIVEMTLGSEGVLNQAVKLPRGEDENEWLAVHCVDFYNQINMLYGSITEFCSPQTCPR 108 (236)
T ss_dssp CCCCCCC------------CHHHHHHHHHHGGGC---CCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHGGGCCTTTCSS
T ss_pred CCCCCCCCcCCCCCCccHHHHHHHHHHHhcCCcCHHHHhcCcCCCchhhHHHHHHHHHHHHHHHHHHHHHcccCcccCCC
Confidence 45667755556799999999999999999999 99999999999999999998 999999999999999999
Q ss_pred CCCCCCceeEeccCCCCCCCcccChHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCcchH-HHHHHHHHHHHHHHHHhhhh
Q 028620 78 MTAGPKYEYRWADGVQIKKPIEVSAPKYVEYLMDWIESQLDDESIFPQKLGAPFPSNFK-EVVKTIFKRLFRVYAHIYHS 156 (206)
Q Consensus 78 MsAg~~~~ylw~d~~~~~kp~~~sA~~Yi~~~~~w~~~~l~de~iFPt~~~~~FP~~F~-~~v~~I~rrLfRVyaHiY~~ 156 (206)
|+||++|+|+|+|+++ ++|++|||||||+++|+||+++|+|+++|||+.|++||++|+ +.|++|||||||||||||+|
T Consensus 109 MsAg~~~~YlW~d~~~-kkp~~~~A~~Yi~~lm~wi~~~l~de~iFPs~~~~~FP~~F~~~~v~~I~RRLfRVyAHiY~~ 187 (236)
T 2hjn_A 109 MIATNEYEYLWAFQKG-QPPVSVSAPKYVECLMRWCQDQFDDESLFPSKVTGTFPEGFIQRVIQPILRRLFRVYAHIYCH 187 (236)
T ss_dssp CBSSTTEEECBCSSTT-SCCBCCCHHHHHHHHHHHHHHHHTCTTTSCSSTTCCCCTTHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred CcCCCCeeEEeccCCC-CCCeeeCHHHHHHHHHHHHHHhccCCccCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999976 799999999999999999999999999999999999999999 99999999999999999999
Q ss_pred hHHHHHhhcchhHHHHHHHHHHHHHHHhCCCCcCCcCchHHHHHHhhcC
Q 028620 157 HFQKIVSLKEEAHLNTCFKHFILFTCEFGLIDKKELGPLQELIDSIIVP 205 (206)
Q Consensus 157 H~~~~~~l~~e~hlNt~fkhF~~F~~eF~Li~~kel~pl~~li~~l~~~ 205 (206)
||+.|+++|+|+|||+|||||++|++||+||+++|++||++||+.|+++
T Consensus 188 Hf~~~~~l~~e~hLNt~FkHF~~F~~ef~Li~~kel~PL~~li~~l~~~ 236 (236)
T 2hjn_A 188 HFNEILELNLQTVLNTSFRHFCLFAQEFELLRPADFGPLLELVMELRDR 236 (236)
T ss_dssp SHHHHHHTTCHHHHHHHHHHHHHHHHHTTCSCGGGGGGGHHHHHHHCC-
T ss_pred HHHHHHHcccchhhhhhHHHHHHHHHHhcCCCHHHhhhHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999763
No 2
>1pi1_A MOB1A; mitotic EXIT network, mitosis, DBF2, cell cycle; 2.00A {Homo sapiens} SCOP: a.29.7.1 PDB: 1r3b_A
Probab=100.00 E-value=4.5e-78 Score=504.10 Aligned_cols=173 Identities=68% Similarity=1.252 Sum_probs=169.6
Q ss_pred HHHhcCCchhhhhcCCCCCCchhHHhh---------hhhhhhccccCCCCCCCCCCCCCCceeEeccCCCCCCCcccChH
Q 028620 33 DATLGSGNLREAVRLPPGEDLNEWLAV---------NLLYGTLTEFCTAENCPTMTAGPKYEYRWADGVQIKKPIEVSAP 103 (206)
Q Consensus 33 ~~~l~~g~l~~~V~lP~g~d~neWlA~---------n~l~~~l~e~CT~~tCP~MsAg~~~~ylw~d~~~~~kp~~~sA~ 103 (206)
+++|++||++++|++|+|+|+|||||+ |+|||+|+|+||++|||+|+||++|+|+|+|++++++|++||||
T Consensus 2 ~~~l~~g~l~~~v~lP~g~d~~eWla~~~~df~~~in~ly~~i~e~Ct~~tCP~MsAg~~~~Ylw~d~~~~kkp~~~~A~ 81 (185)
T 1pi1_A 2 EATLGSGNLRQAVMLPEGEDLNEWIAVNTVDFFNQINMLYGTITEFCTEASCPVMSAGPRYEYHWADGTNIKKPIKCSAP 81 (185)
T ss_dssp CCCTTCCCHHHHTSCCTTCCHHHHHHHHHHHHHHHHHHHHHHTGGGSCTTTCSSEESSTTCEECBCCSSSCCSCBCCCHH
T ss_pred ccchhcCcHHHHhcCcCCCchhhhHHHHHHHHHHHHHHHHHHHhcccCcccCccccCCCCeEEEEecCCCCCCCcccCHH
Confidence 468999999999999999999999999 99999999999999999999999999999999878899999999
Q ss_pred HHHHHHHHHHHHhhCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHHHhhhhhHHHHHhhcchhHHHHHHHHHHHHHHH
Q 028620 104 KYVEYLMDWIESQLDDESIFPQKLGAPFPSNFKEVVKTIFKRLFRVYAHIYHSHFQKIVSLKEEAHLNTCFKHFILFTCE 183 (206)
Q Consensus 104 ~Yi~~~~~w~~~~l~de~iFPt~~~~~FP~~F~~~v~~I~rrLfRVyaHiY~~H~~~~~~l~~e~hlNt~fkhF~~F~~e 183 (206)
|||+++|+|++++|+|+++|||+.|++||++|++.|++|||||||||||||+|||+.|.++|+|+|||+|||||++|+++
T Consensus 82 ~Yi~~~m~wi~~~l~d~~iFPs~~~~~fp~~f~~~~~~I~rRLfRVyaHiY~~Hf~~~~~l~~e~hlNt~f~hF~~F~~e 161 (185)
T 1pi1_A 82 KYIDYLMTWVQDQLDDETLFPSKIGVPFPKNFMSVAKTILKRLFRVYAHIYHQHFDSVMQLQEEAHLNTSFKHFIFFVQE 161 (185)
T ss_dssp HHHHHHHHHHHHHHTCTTTSCSSTTSCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCccCCCCCCCCCChhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHcCCcceehhhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCcCCcCchHHHHHHhhcC
Q 028620 184 FGLIDKKELGPLQELIDSIIVP 205 (206)
Q Consensus 184 F~Li~~kel~pl~~li~~l~~~ 205 (206)
|+||+++|++||++||+.|++.
T Consensus 162 f~Li~~kel~Pl~~li~~~~~~ 183 (185)
T 1pi1_A 162 FNLIDRRELAPLQELIEKLGSK 183 (185)
T ss_dssp HTCSCGGGGGGGHHHHHHSSCC
T ss_pred hCCCCHHHHHhHHHHHHHHhcc
Confidence 9999999999999999999864
No 3
>1ae9_A Lambda integrase; DNA recombination, site-specific recombination; 1.90A {Enterobacteria phage lambda} SCOP: d.163.1.1
Probab=32.65 E-value=51 Score=24.26 Aligned_cols=31 Identities=26% Similarity=0.352 Sum_probs=19.8
Q ss_pred HhhCCCCCCCCCCCCCCCcchHHHHHHHHHHHHH
Q 028620 115 SQLDDESIFPQKLGAPFPSNFKEVVKTIFKRLFR 148 (206)
Q Consensus 115 ~~l~de~iFPt~~~~~FP~~F~~~v~~I~rrLfR 148 (206)
..-.++-+||+..|.+... ..+.++++++.+
T Consensus 88 ~~~~~~~lF~~~~g~~~~~---~~~~~~~~~~~~ 118 (179)
T 1ae9_A 88 EILGGETIIASTRREPLSS---GTVSRYFMRARK 118 (179)
T ss_dssp HHTCCSBSSCCTTSCCCCH---HHHHHHHHHHHH
T ss_pred ccCCCCeEEEcCCCCcCCh---hHHHHHHHHHHH
Confidence 3456889999998876543 345555555443
No 4
>3ee1_A Effector protein VIRA; beta barrels, six-stranded beta barrel, hydrolase, protease, secreted, thiol protease, virulence; 3.01A {Shigella flexneri}
Probab=21.14 E-value=29 Score=29.79 Aligned_cols=44 Identities=23% Similarity=0.447 Sum_probs=35.2
Q ss_pred cccChHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCcchHHHHHHHHHHH
Q 028620 98 IEVSAPKYVEYLMDWIESQLDDESIFPQKLGAPFPSNFKEVVKTIFKRL 146 (206)
Q Consensus 98 ~~~sA~~Yi~~~~~w~~~~l~de~iFPt~~~~~FP~~F~~~v~~I~rrL 146 (206)
+--|||+-|+..+.-+.+.+-+.+.||.+.. +|-..-..|+|-+
T Consensus 147 thkpapevietaincctsiipnddyfpvkdt-----dfnsvwhdiyrdi 190 (400)
T 3ee1_A 147 THKPAPEVIETAINCCTSIIPNDDYFPVKDT-----DFNSVWHDIYRDI 190 (400)
T ss_dssp CSSCCHHHHHHHHHSCEEECCCCSBCCCCTT-----TTTTHHHHHHHHH
T ss_pred cCCCCHHHHHHHHhhhccccCCCCccccccC-----chhhHHHHHHHHh
Confidence 4568999999999999999999999999852 4555556666653
No 5
>2kwv_A RAD30 homolog B, DNA polymerase IOTA; ubiquitin-binding motif, UBM, TL protein binding-signaling protein complex; HET: DNA; NMR {Mus musculus}
Probab=15.99 E-value=48 Score=21.28 Aligned_cols=20 Identities=20% Similarity=0.200 Sum_probs=14.0
Q ss_pred chhhhhcCCCCCCchhHHhh
Q 028620 40 NLREAVRLPPGEDLNEWLAV 59 (206)
Q Consensus 40 ~l~~~V~lP~g~d~neWlA~ 59 (206)
|..-...||+|+|..+.-+.
T Consensus 5 ~~~p~~~lP~~VD~eVF~~L 24 (48)
T 2kwv_A 5 SDLPLQALPEGVDQEVFKQL 24 (48)
T ss_dssp --CCTTSSCTTCCGGGTTTS
T ss_pred ccCccccCCCCCCHHHHHHC
Confidence 45567799999998876554
No 6
>3g46_A Globin-1; oxygen transport, allostery, oxygen affinity, cytoplasm, heme, iron, metal-binding, oxygen storage/transport, oxygen binding; HET: HEM; 0.91A {Scapharca inaequivalvis} SCOP: a.1.1.2 PDB: 1nxf_A* 3g4q_A* 3g4r_A* 3g4u_A* 3g4v_A* 3g4w_A* 3g4y_A* 3g52_A* 3g53_A* 3uhg_A* 3uhs_A* 3uhk_A* 3uhi_A* 3uhn_A* 3ugy_A* 2auo_A* 2aup_A* 3uhr_A* 3uh5_A* 3uh3_A* ...
Probab=13.54 E-value=3.1e+02 Score=20.08 Aligned_cols=28 Identities=14% Similarity=0.212 Sum_probs=18.7
Q ss_pred chHHHHHHHHHHHHHHHHHh--hhhhHHHH
Q 028620 134 NFKEVVKTIFKRLFRVYAHI--YHSHFQKI 161 (206)
Q Consensus 134 ~F~~~v~~I~rrLfRVyaHi--Y~~H~~~~ 161 (206)
+-...-..+|.|||..|=-+ |+.|+..+
T Consensus 28 ~~~~~g~~~~~rlF~~~P~~k~~F~~~~~~ 57 (146)
T 3g46_A 28 DKKGNGVALMTTLFADNQETIGYFKRLGDV 57 (146)
T ss_dssp GHHHHHHHHHHHHHHHCGGGGGGGGGGCCG
T ss_pred CHHHHHHHHHHHHHHHCHHHHHHHHHHcCC
Confidence 34556677888888887654 66666443
No 7
>1z19_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 2.80A {Enterobacteria phage lambda} PDB: 1p7d_A*
Probab=13.48 E-value=2.2e+02 Score=22.00 Aligned_cols=31 Identities=23% Similarity=0.329 Sum_probs=19.2
Q ss_pred HhhCCCCCCCCCCCCCCCcchHHHHHHHHHHHHH
Q 028620 115 SQLDDESIFPQKLGAPFPSNFKEVVKTIFKRLFR 148 (206)
Q Consensus 115 ~~l~de~iFPt~~~~~FP~~F~~~v~~I~rrLfR 148 (206)
..-.++-+||+..|.+.. ...+.+.++++.+
T Consensus 191 ~~~~~~~lF~~~~g~~~~---~~~~~~~~~~~~~ 221 (283)
T 1z19_A 191 EILGGETIIASTRREPLS---SGTVSRYFMRARK 221 (283)
T ss_dssp HHHCSSBSSCCTTSSCCC---HHHHHHHHHHHHH
T ss_pred HhCCCCceEeCCCCCcCC---hhhHHHHHHHHHH
Confidence 345688999998887653 3344455555433
No 8
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens}
Probab=11.46 E-value=1.6e+02 Score=21.51 Aligned_cols=25 Identities=16% Similarity=0.158 Sum_probs=17.7
Q ss_pred ChHHHHHHHHHHHHHhhCCCCCCCC
Q 028620 101 SAPKYVEYLMDWIESQLDDESIFPQ 125 (206)
Q Consensus 101 sA~~Yi~~~~~w~~~~l~de~iFPt 125 (206)
-|++||.++..-.++.-.+...|-+
T Consensus 68 lAi~YI~~Lq~~L~~~~~~~~~~~~ 92 (97)
T 4aya_A 68 HVIDYILDLQIALDSHLKPSFLVQS 92 (97)
T ss_dssp HHHHHHHHHHHHHHTTTSTTCC---
T ss_pred HHHHHHHHHHHHHhcCCCCcchhhc
Confidence 5889999998888877666676654
No 9
>4hrt_A Globin-2 A chain; oxygen transport, globin fold, oxygen; HET: HEM; 1.46A {Scapharca inaequivalvis} PDB: 1sct_A*
Probab=10.74 E-value=4.5e+02 Score=19.31 Aligned_cols=26 Identities=12% Similarity=0.299 Sum_probs=17.5
Q ss_pred hHHHHHHHHHHHHHHHHHh--hhhhHHH
Q 028620 135 FKEVVKTIFKRLFRVYAHI--YHSHFQK 160 (206)
Q Consensus 135 F~~~v~~I~rrLfRVyaHi--Y~~H~~~ 160 (206)
-...-..+|.|||..|=-+ |+.|+..
T Consensus 30 ~~~~g~~~~~rlF~~~P~~k~~F~~~~~ 57 (150)
T 4hrt_A 30 IEATGLMLMSNLFTLRPDTKTYFTRLGD 57 (150)
T ss_dssp HHHHHHHHHHHHHHHCGGGGGGGGGGCC
T ss_pred HHHHHHHHHHHHHHHCHHHHHHHHHcCC
Confidence 4566677888888887543 6666633
No 10
>3c9q_A Uncharacterized protein C8ORF32; medically relevant, putative involvement in human inherited and disorders of purkinje cell degeneration; HET: MSE; 1.50A {Homo sapiens}
Probab=10.42 E-value=15 Score=30.48 Aligned_cols=42 Identities=29% Similarity=0.405 Sum_probs=27.6
Q ss_pred CCCcccChHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHH-HHhhhhhHH
Q 028620 95 KKPIEVSAPKYVEYLMDWIESQLDDESIFPQKLGAPFPSNFKEVVKTIFKRLFRVY-AHIYHSHFQ 159 (206)
Q Consensus 95 ~kp~~~sA~~Yi~~~~~w~~~~l~de~iFPt~~~~~FP~~F~~~v~~I~rrLfRVy-aHiY~~H~~ 159 (206)
.=|-.|++.+|++.+ |++... +..-+||.|||- |..|..||.
T Consensus 101 ~LpfP~~~~~Y~~~t-------------f~~~~~----------l~~~~~r~FRVIpa~~yL~~Fa 143 (205)
T 3c9q_A 101 VLPFPCLFDTYVEDA-------------IKSDDD----------IHPQFRRKFRVICADSYLKNFA 143 (205)
T ss_dssp SSCSSEEHHHHHHHT-------------TCCSTT----------SCGGGCCEEEEEEHHHHHHHCC
T ss_pred CCCCCcCHHHHHHHh-------------cCcccc----------cChhhceeEEEEeHHHHHHhhc
Confidence 456788888888843 333221 233467889987 888888873
Done!