BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028621
(206 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3EK5|A Chain A, Unique Gtp-Binding Pocket And Allostery Of Ump Kinase From
A Gram- Negative Phytopathogen Bacterium
pdb|3EK5|B Chain B, Unique Gtp-Binding Pocket And Allostery Of Ump Kinase From
A Gram- Negative Phytopathogen Bacterium
pdb|3EK5|C Chain C, Unique Gtp-Binding Pocket And Allostery Of Ump Kinase From
A Gram- Negative Phytopathogen Bacterium
pdb|3EK5|D Chain D, Unique Gtp-Binding Pocket And Allostery Of Ump Kinase From
A Gram- Negative Phytopathogen Bacterium
pdb|3EK5|E Chain E, Unique Gtp-Binding Pocket And Allostery Of Ump Kinase From
A Gram- Negative Phytopathogen Bacterium
pdb|3EK5|F Chain F, Unique Gtp-Binding Pocket And Allostery Of Ump Kinase From
A Gram- Negative Phytopathogen Bacterium
pdb|3EK6|A Chain A, Unique Gtp-Binding Pocket And Allostery Of Ump Kinase From
A Gram- Negative Phytopathogen Bacterium
pdb|3EK6|B Chain B, Unique Gtp-Binding Pocket And Allostery Of Ump Kinase From
A Gram- Negative Phytopathogen Bacterium
pdb|3EK6|C Chain C, Unique Gtp-Binding Pocket And Allostery Of Ump Kinase From
A Gram- Negative Phytopathogen Bacterium
pdb|3EK6|D Chain D, Unique Gtp-Binding Pocket And Allostery Of Ump Kinase From
A Gram- Negative Phytopathogen Bacterium
pdb|3EK6|E Chain E, Unique Gtp-Binding Pocket And Allostery Of Ump Kinase From
A Gram- Negative Phytopathogen Bacterium
pdb|3EK6|F Chain F, Unique Gtp-Binding Pocket And Allostery Of Ump Kinase From
A Gram- Negative Phytopathogen Bacterium
Length = 243
Score = 224 bits (570), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 101/193 (52%), Positives = 147/193 (76%), Gaps = 1/193 (0%)
Query: 3 QVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAF 62
QVA+V+GGGNIFRGA A SG+DR + D++GMLATV+NA+ +Q +E +G RV +A
Sbjct: 50 QVALVIGGGNIFRGAGLAA-SGMDRVTGDHMGMLATVINALAMQDALEKLGAKVRVMSAI 108
Query: 63 RMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVD 122
++++V E +IRRRA+RHLEKGR+ IFAAGTGNPFFTTD+ AALR EI A+++LKAT VD
Sbjct: 109 KINDVCEDFIRRRAIRHLEKGRIAIFAAGTGNPFFTTDSGAALRAIEIGADLLLKATKVD 168
Query: 123 GVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAK 182
GVYD +P+++ +A D+LTY EV + L VMD A L +++++P+ +F +++PG + +
Sbjct: 169 GVYDKDPKKHSDAVRYDSLTYDEVIMQGLEVMDTAAFALARDSDLPLRIFGMSEPGVLLR 228
Query: 183 AIQGERVGTLIGG 195
+ G ++GTL+ G
Sbjct: 229 ILHGAQIGTLVQG 241
>pdb|3NWY|A Chain A, Structure And Allosteric Regulation Of The Uridine
Monophosphate Kinase From Mycobacterium Tuberculosis
pdb|3NWY|B Chain B, Structure And Allosteric Regulation Of The Uridine
Monophosphate Kinase From Mycobacterium Tuberculosis
pdb|3NWY|C Chain C, Structure And Allosteric Regulation Of The Uridine
Monophosphate Kinase From Mycobacterium Tuberculosis
pdb|3NWY|D Chain D, Structure And Allosteric Regulation Of The Uridine
Monophosphate Kinase From Mycobacterium Tuberculosis
pdb|3NWY|E Chain E, Structure And Allosteric Regulation Of The Uridine
Monophosphate Kinase From Mycobacterium Tuberculosis
pdb|3NWY|F Chain F, Structure And Allosteric Regulation Of The Uridine
Monophosphate Kinase From Mycobacterium Tuberculosis
Length = 281
Score = 222 bits (565), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 107/191 (56%), Positives = 142/191 (74%), Gaps = 1/191 (0%)
Query: 3 QVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAF 62
Q+A+V+GGGN FRGA G++R+ +DY+GML TVMN++ LQ +E GI TRVQTA
Sbjct: 90 QIAVVIGGGNFFRGAQLQ-QLGMERTRSDYMGMLGTVMNSLALQDFLEKEGIVTRVQTAI 148
Query: 63 RMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVD 122
M +VAEPY+ RAVRHLEKGRVVIF AG G P+F+TDT AA R EI A+VVL A VD
Sbjct: 149 TMGQVAEPYLPLRAVRHLEKGRVVIFGAGMGLPYFSTDTTAAQRALEIGADVVLMAKAVD 208
Query: 123 GVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAK 182
GV+ ++PR NP A LL ++++EV + L V D TA +LC +N +P++VFNL GNIA+
Sbjct: 209 GVFAEDPRVNPEAELLTAVSHREVLDRGLRVADATAFSLCMDNGMPILVFNLLTDGNIAR 268
Query: 183 AIQGERVGTLI 193
A++GE++GTL+
Sbjct: 269 AVRGEKIGTLV 279
>pdb|1Z9D|A Chain A, Crystal Structure Of A Putative Uridylate Kinase
(Ump-Kinase) From Streptococcus Pyogenes
pdb|1Z9D|B Chain B, Crystal Structure Of A Putative Uridylate Kinase
(Ump-Kinase) From Streptococcus Pyogenes
pdb|1Z9D|C Chain C, Crystal Structure Of A Putative Uridylate Kinase
(Ump-Kinase) From Streptococcus Pyogenes
Length = 252
Score = 202 bits (513), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 99/192 (51%), Positives = 135/192 (70%), Gaps = 2/192 (1%)
Query: 3 QVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAF 62
Q+A+V+GGGN++RG AA ++G DR ADY G L TV NA+ +++ G+ TRVQTA
Sbjct: 48 QIALVIGGGNLWRGEPAA-DAGXDRVQADYTGXLGTVXNALVXADSLQHYGVDTRVQTAI 106
Query: 63 RMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATN-V 121
VAEPYIR RA+RHLEK R+V+F AG G+P+F+TDT AALR AEI A+ +L A N V
Sbjct: 107 PXQNVAEPYIRGRALRHLEKNRIVVFGAGIGSPYFSTDTTAALRAAEIEADAILXAKNGV 166
Query: 122 DGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIA 181
DGVY+ +P+++ NA D LT+ EV + L + D TA TL +N+I +VVFN N+ GNI
Sbjct: 167 DGVYNADPKKDANAVKFDELTHGEVIKRGLKIXDATASTLSXDNDIDLVVFNXNEAGNIQ 226
Query: 182 KAIQGERVGTLI 193
+ + GE +GT +
Sbjct: 227 RVVFGEHIGTTV 238
>pdb|4A7W|A Chain A, Crystal Structure Of Uridylate Kinase From Helicobacter
Pylori
pdb|4A7W|B Chain B, Crystal Structure Of Uridylate Kinase From Helicobacter
Pylori
pdb|4A7X|A Chain A, Crystal Structure Of Uridylate Kinase From Helicobacter
Pylori
pdb|4A7X|B Chain B, Crystal Structure Of Uridylate Kinase From Helicobacter
Pylori
pdb|4A7X|C Chain C, Crystal Structure Of Uridylate Kinase From Helicobacter
Pylori
pdb|4A7X|D Chain D, Crystal Structure Of Uridylate Kinase From Helicobacter
Pylori
pdb|4A7X|E Chain E, Crystal Structure Of Uridylate Kinase From Helicobacter
Pylori
pdb|4A7X|F Chain F, Crystal Structure Of Uridylate Kinase From Helicobacter
Pylori
Length = 240
Score = 199 bits (507), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 90/171 (52%), Positives = 128/171 (74%)
Query: 18 SAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAV 77
SAA + R+S DY+GMLATV+NA+ +Q +E IG+ TRVQ+A + E+ E YI R+A+
Sbjct: 63 SAAQGGIIRRTSGDYMGMLATVINAVAMQEALEHIGLDTRVQSAIEIKEICESYIYRKAI 122
Query: 78 RHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARL 137
RHLEKGRVVIF AGTGNPFFTTDTAA LR EI +++++KAT VDG+YD +P + +A+
Sbjct: 123 RHLEKGRVVIFGAGTGNPFFTTDTAATLRAIEIGSDLIIKATKVDGIYDKDPNKFKDAKK 182
Query: 138 LDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGER 188
LDTL+Y + D+ VMD TAI+L ++N +P+VV N+ + GN+ + I+ ++
Sbjct: 183 LDTLSYNDALIGDIEVMDDTAISLAKDNKLPIVVCNMFKKGNLLQVIKHQQ 233
>pdb|1YBD|A Chain A, Crystal Structure Analysis Of Uridylate Kinase From
Neisseria Meningitidis
pdb|1YBD|B Chain B, Crystal Structure Analysis Of Uridylate Kinase From
Neisseria Meningitidis
pdb|1YBD|C Chain C, Crystal Structure Analysis Of Uridylate Kinase From
Neisseria Meningitidis
Length = 239
Score = 196 bits (499), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 96/182 (52%), Positives = 130/182 (71%), Gaps = 1/182 (0%)
Query: 12 NIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPY 71
NIFRG SA S DR++ADY G ATV NA+ L+ E++GI RVQ+A ++AE Y
Sbjct: 57 NIFRGVSAQAGS-XDRATADYXGXXATVXNALALKDAFETLGIKARVQSALSXQQIAETY 115
Query: 72 IRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRR 131
R +A+++LE+G+VVIFAAGTGNPFFTTDTAAALR AE N +V LKATNVDGVY +P++
Sbjct: 116 ARPKAIQYLEEGKVVIFAAGTGNPFFTTDTAAALRGAEXNCDVXLKATNVDGVYTADPKK 175
Query: 132 NPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGT 191
+P+A +T+T+ E K+L V D TA LC+E + +VVF + + G++ + I GE GT
Sbjct: 176 DPSATRYETITFDEALLKNLKVXDATAFALCRERKLNIVVFGIAKEGSLKRVITGEDEGT 235
Query: 192 LI 193
L+
Sbjct: 236 LV 237
>pdb|2A1F|A Chain A, Crystal Structure Of Uridylate Kinase
pdb|2A1F|B Chain B, Crystal Structure Of Uridylate Kinase
pdb|2A1F|C Chain C, Crystal Structure Of Uridylate Kinase
pdb|2A1F|D Chain D, Crystal Structure Of Uridylate Kinase
pdb|2A1F|E Chain E, Crystal Structure Of Uridylate Kinase
pdb|2A1F|F Chain F, Crystal Structure Of Uridylate Kinase
Length = 247
Score = 188 bits (478), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 88/191 (46%), Positives = 136/191 (71%), Gaps = 1/191 (0%)
Query: 3 QVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAF 62
+V++V+GGGN+FRGA A +G++R D++GMLATVMN + ++ ++ + ++ +AF
Sbjct: 49 EVSVVLGGGNLFRGAKLA-KAGMNRVVGDHMGMLATVMNGLAMRDSLFRADVNAKLMSAF 107
Query: 63 RMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVD 122
+++ + + Y A++ L + RVVIF+AGTGNPFFTTD+ A LR EI A+VVLKAT VD
Sbjct: 108 QLNGICDTYNWSEAIKMLREKRVVIFSAGTGNPFFTTDSTACLRGIEIEADVVLKATKVD 167
Query: 123 GVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAK 182
GVYD +P +NP+A+L L+Y EV K+L VMD++A TL +++ +P+ VFN+ +PG + +
Sbjct: 168 GVYDCDPAKNPDAKLYKNLSYAEVIDKELKVMDLSAFTLARDHGMPIRVFNMGKPGALRQ 227
Query: 183 AIQGERVGTLI 193
+ G GT I
Sbjct: 228 VVTGTEEGTTI 238
>pdb|2BND|A Chain A, The Structure Of E.Coli Ump Kinase In Complex With Udp
pdb|2BND|B Chain B, The Structure Of E.Coli Ump Kinase In Complex With Udp
Length = 241
Score = 186 bits (472), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 90/192 (46%), Positives = 130/192 (67%), Gaps = 1/192 (0%)
Query: 2 FQVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTA 61
QV +V+GGGN+FRGA A +G++R D++GMLATVMN + ++ + + R+ +A
Sbjct: 49 IQVGVVIGGGNLFRGAGLA-KAGMNRVVGDHMGMLATVMNGLAMRDALHRAYVNARLMSA 107
Query: 62 FRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNV 121
++ V + Y A+ L RVVI +AGTGNPFFTTD+AA LR EI A VVLKAT V
Sbjct: 108 IPLNAVCDSYSWAEAISLLRNNRVVILSAGTGNPFFTTDSAACLRGIEIEANVVLKATKV 167
Query: 122 DGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIA 181
DGV+ +P ++P A + + LTY EV K+L VMD+ A TL +++ +P+ VFN+N+PG +
Sbjct: 168 DGVFTADPAKDPTATMYEQLTYSEVLEKELKVMDLAAFTLARDHKLPIRVFNMNKPGALR 227
Query: 182 KAIQGERVGTLI 193
+ + GE+ GTLI
Sbjct: 228 RVVMGEKEGTLI 239
>pdb|2BNE|A Chain A, The Structure Of E. Coli Ump Kinase In Complex With Ump
pdb|2BNE|B Chain B, The Structure Of E. Coli Ump Kinase In Complex With Ump
pdb|2V4Y|A Chain A, The Structure Of E. Coli Ump Kinase In Complex With Its
Allosteric Regulator Gtp
pdb|2V4Y|B Chain B, The Structure Of E. Coli Ump Kinase In Complex With Its
Allosteric Regulator Gtp
pdb|2V4Y|C Chain C, The Structure Of E. Coli Ump Kinase In Complex With Its
Allosteric Regulator Gtp
pdb|2V4Y|D Chain D, The Structure Of E. Coli Ump Kinase In Complex With Its
Allosteric Regulator Gtp
pdb|2V4Y|E Chain E, The Structure Of E. Coli Ump Kinase In Complex With Its
Allosteric Regulator Gtp
pdb|2V4Y|F Chain F, The Structure Of E. Coli Ump Kinase In Complex With Its
Allosteric Regulator Gtp
Length = 241
Score = 186 bits (471), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 90/192 (46%), Positives = 130/192 (67%), Gaps = 1/192 (0%)
Query: 2 FQVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTA 61
QV +V+GGGN+FRGA A +G++R D++GMLATVMN + ++ + + R+ +A
Sbjct: 49 IQVGVVIGGGNLFRGAGLA-KAGMNRVVGDHMGMLATVMNGLAMRDALHRAYVNARLMSA 107
Query: 62 FRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNV 121
++ V + Y A+ L RVVI +AGTGNPFFTTD+AA LR EI A VVLKAT V
Sbjct: 108 IPLNGVCDSYSWAEAISLLRNNRVVILSAGTGNPFFTTDSAACLRGIEIEANVVLKATKV 167
Query: 122 DGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIA 181
DGV+ +P ++P A + + LTY EV K+L VMD+ A TL +++ +P+ VFN+N+PG +
Sbjct: 168 DGVFTADPAKDPTATMYEQLTYSEVLEKELKVMDLAAFTLARDHKLPIRVFNMNKPGALR 227
Query: 182 KAIQGERVGTLI 193
+ + GE+ GTLI
Sbjct: 228 RVVMGEKEGTLI 239
>pdb|2BNF|A Chain A, The Structure Of E. Coli Ump Kinase In Complex With Utp
pdb|2BNF|B Chain B, The Structure Of E. Coli Ump Kinase In Complex With Utp
Length = 241
Score = 171 bits (433), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 87/192 (45%), Positives = 122/192 (63%), Gaps = 1/192 (0%)
Query: 2 FQVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTA 61
QV +V+GGGN+FRGA A +G +R D+ G LATV N + + + + R+ +A
Sbjct: 49 IQVGVVIGGGNLFRGAGLA-KAGXNRVVGDHXGXLATVXNGLAXRDALHRAYVNARLXSA 107
Query: 62 FRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNV 121
++ V + Y A+ L RVVI +AGTGNPFFTTD+AA LR EI A VVLKAT V
Sbjct: 108 IPLNGVCDSYSWAEAISLLRNNRVVILSAGTGNPFFTTDSAACLRGIEIEANVVLKATKV 167
Query: 122 DGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIA 181
DGV+ +P ++P A + LTY EV K+L V D+ A TL +++ +P+ VFN N+PG +
Sbjct: 168 DGVFTADPAKDPTATXYEQLTYSEVLEKELKVXDLAAFTLARDHKLPIRVFNXNKPGALR 227
Query: 182 KAIQGERVGTLI 193
+ + GE+ GTLI
Sbjct: 228 RVVXGEKEGTLI 239
>pdb|2JJX|A Chain A, The Crystal Structure Of Ump Kinase From Bacillus
Anthracis (Ba1797)
pdb|2JJX|B Chain B, The Crystal Structure Of Ump Kinase From Bacillus
Anthracis (Ba1797)
pdb|2JJX|C Chain C, The Crystal Structure Of Ump Kinase From Bacillus
Anthracis (Ba1797)
Length = 255
Score = 164 bits (414), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 84/194 (43%), Positives = 121/194 (62%), Gaps = 3/194 (1%)
Query: 2 FQVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMES-IGIPTRVQT 60
+V+IV+GGGNIFRG A G+DR AD IG L T++N++ L+ + S RV T
Sbjct: 52 IEVSIVIGGGNIFRG-HLAEEWGIDRVEADNIGTLGTIINSLMLRGVLTSKTNKEVRVMT 110
Query: 61 AFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATN 120
+ + VAEPYIR RAV HL+ G +VIF G G PF TTD + R E+N++ +L A
Sbjct: 111 SIPFNAVAEPYIRLRAVHHLDNGYIVIFGGGNGQPFVTTDYPSVQRAIEMNSDAILVAKQ 170
Query: 121 -VDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGN 179
VDGV+ +P+ N +A++ L Y +V +++ VMD A+ L ++ N+P VFN ++PG
Sbjct: 171 GVDGVFTSDPKHNKSAKMYRKLNYNDVVRQNIQVMDQAALLLARDYNLPAHVFNFDEPGV 230
Query: 180 IAKAIQGERVGTLI 193
+ + GE VGTLI
Sbjct: 231 MRRICLGEHVGTLI 244
>pdb|2VA1|A Chain A, Crystal Structure Of Ump Kinase From Ureaplasma Parvum
pdb|2VA1|B Chain B, Crystal Structure Of Ump Kinase From Ureaplasma Parvum
pdb|2VA1|C Chain C, Crystal Structure Of Ump Kinase From Ureaplasma Parvum
pdb|2VA1|D Chain D, Crystal Structure Of Ump Kinase From Ureaplasma Parvum
pdb|2VA1|E Chain E, Crystal Structure Of Ump Kinase From Ureaplasma Parvum
pdb|2VA1|F Chain F, Crystal Structure Of Ump Kinase From Ureaplasma Parvum
Length = 256
Score = 157 bits (398), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 77/193 (39%), Positives = 126/193 (65%), Gaps = 2/193 (1%)
Query: 2 FQVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTA 61
+ V+IV+GGGNI+RG S A +DR+ AD +GM+AT++N + L+ + + + T V +A
Sbjct: 63 YIVSIVLGGGNIWRG-SIAKELDMDRNLADNMGMMATIINGLALENALNHLNVNTIVLSA 121
Query: 62 FRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATN- 120
+ ++ + +EK +V+IF AGTG P+FTTD+ AA+R AE + ++L N
Sbjct: 122 IKCDKLVHESSANNIKKAIEKEQVMIFVAGTGFPYFTTDSCAAIRAAETESSIILMGKNG 181
Query: 121 VDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNI 180
VDGVYD +P+ NPNA+ + +T+ +++L VMD TA+ LCQENNI ++VFN+++P I
Sbjct: 182 VDGVYDSDPKINPNAQFYEHITFNMALTQNLKVMDATALALCQENNINLLVFNIDKPNAI 241
Query: 181 AKAIQGERVGTLI 193
++ + T++
Sbjct: 242 VDVLEKKNKYTIV 254
>pdb|2IJ9|A Chain A, Crystal Structure Of Uridylate Kinase From Archaeoglobus
Fulgidus
pdb|2IJ9|B Chain B, Crystal Structure Of Uridylate Kinase From Archaeoglobus
Fulgidus
Length = 219
Score = 84.3 bits (207), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 69/204 (33%), Positives = 101/204 (49%), Gaps = 30/204 (14%)
Query: 3 QVAIVVGGGNIFRG-ASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIG--IPTRVQ 59
QV +VVGGG + R +A G + DYIG+ AT +NA+ L + + S +P
Sbjct: 34 QVFVVVGGGKLAREYIKSARELGASETFCDYIGIAATRLNAMLLISAIPSAAKKVPVDFM 93
Query: 60 TAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKAT 119
A +S++ RVV+ G P TTD AAL I A+V + AT
Sbjct: 94 EAEELSKLY---------------RVVVM--GGTFPGHTTDATAALLAEFIKADVFINAT 136
Query: 120 NVDGVYDDNPRRNPNARLLDTLTYQ---EVTSKDLS------VMDMTAITLCQENNIPVV 170
NVDGVY +P+ + +A D L+ Q E+ S+ + V+D+ A + + + I
Sbjct: 137 NVDGVYSADPKSDTSAVKYDRLSPQQLVEIVSRSSAKAGTNVVIDLLAAKIIERSKIKTY 196
Query: 171 VFNLNQPGNIAKAIQGERVGTLIG 194
V L P NI KA++GE VGT+I
Sbjct: 197 VI-LGTPENIMKAVKGEAVGTVIA 219
>pdb|2BRX|A Chain A, Ump Kinase From Pyrococcus Furiosus Without Ligands
pdb|2BRX|B Chain B, Ump Kinase From Pyrococcus Furiosus Without Ligands
Length = 244
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 90/201 (44%), Gaps = 24/201 (11%)
Query: 3 QVAIVVGGGNIFRG-ASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTA 61
+VA+VVGGG + R A + D+IG+ T NA+ L A + P
Sbjct: 56 EVAVVVGGGKLARKYIEVAEKFNSSETFKDFIGIQITRANAMLLIAALREKAYPV----- 110
Query: 62 FRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNV 121
V E + L+K I G +P TTD AAL + A++++ TNV
Sbjct: 111 -----VVEDFWEAWKAVQLKK----IPVMGGTHPGHTTDAVAALLAEFLKADLLVVITNV 161
Query: 122 DGVYDDNPRRNPNARLLDTLTYQ---EVTSKDL------SVMDMTAITLCQENNIPVVVF 172
DGVY +P+++P A+ + + + E+ K + SV+D A + + I +V
Sbjct: 162 DGVYTADPKKDPTAKKIKKMKPEELLEIVGKGIEKAGSSSVIDPLAAKIIARSGIKTIVI 221
Query: 173 NLNQPGNIAKAIQGERVGTLI 193
++ + I+G+ GT I
Sbjct: 222 GKEDAKDLFRVIKGDHNGTTI 242
>pdb|2JI5|A Chain A, Structure Of Ump Kinase From Pyrococcus Furiosus Complexed
With Utp
pdb|2JI5|B Chain B, Structure Of Ump Kinase From Pyrococcus Furiosus Complexed
With Utp
Length = 227
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 89/201 (44%), Gaps = 24/201 (11%)
Query: 3 QVAIVVGGGNIFRG-ASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTA 61
+VA+VVGGG + R A + D+IG+ T NA+ L A + P
Sbjct: 39 EVAVVVGGGKLARKYIEVAEKFNSSETFKDFIGIQITRANAMLLIAALREKAYPV----- 93
Query: 62 FRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNV 121
V E + L+K I G +P TTD AAL + A++++ TNV
Sbjct: 94 -----VVEDFWEAWKAVQLKK----IPVMGGTHPGHTTDAVAALLAEFLKADLLVVITNV 144
Query: 122 DGVYDDNPRRNPNARLLDTLTYQ---EVTSKDL------SVMDMTAITLCQENNIPVVVF 172
DGVY +P+++P A+ + + + E+ K + SV+D A + I +V
Sbjct: 145 DGVYTADPKKDPTAKKIKKMKPEELLEIVGKGIEKAGSSSVIDPLAAKIIARTGIKTIVI 204
Query: 173 NLNQPGNIAKAIQGERVGTLI 193
++ + I+G+ GT I
Sbjct: 205 GKEDAKDLFRVIKGDHNGTTI 225
>pdb|2J4J|A Chain A, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Ump And Amppcp To 2.1
Angstrom Resolution
pdb|2J4J|B Chain B, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Ump And Amppcp To 2.1
Angstrom Resolution
pdb|2J4J|C Chain C, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Ump And Amppcp To 2.1
Angstrom Resolution
pdb|2J4J|D Chain D, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Ump And Amppcp To 2.1
Angstrom Resolution
pdb|2J4J|E Chain E, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Ump And Amppcp To 2.1
Angstrom Resolution
pdb|2J4J|F Chain F, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Ump And Amppcp To 2.1
Angstrom Resolution
pdb|2J4K|A Chain A, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Ump To 2.2 Angstrom
Resolution
pdb|2J4K|B Chain B, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Ump To 2.2 Angstrom
Resolution
pdb|2J4K|C Chain C, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Ump To 2.2 Angstrom
Resolution
pdb|2J4K|D Chain D, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Ump To 2.2 Angstrom
Resolution
pdb|2J4K|E Chain E, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Ump To 2.2 Angstrom
Resolution
pdb|2J4K|F Chain F, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Ump To 2.2 Angstrom
Resolution
pdb|2J4L|A Chain A, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Utp To 2.8 Angstrom
Resolution
pdb|2J4L|B Chain B, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Utp To 2.8 Angstrom
Resolution
pdb|2J4L|C Chain C, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Utp To 2.8 Angstrom
Resolution
pdb|2J4L|D Chain D, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Utp To 2.8 Angstrom
Resolution
pdb|2J4L|E Chain E, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Utp To 2.8 Angstrom
Resolution
pdb|2J4L|F Chain F, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Utp To 2.8 Angstrom
Resolution
pdb|2J4L|G Chain G, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Utp To 2.8 Angstrom
Resolution
pdb|2J4L|H Chain H, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Utp To 2.8 Angstrom
Resolution
pdb|2J4L|I Chain I, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Utp To 2.8 Angstrom
Resolution
pdb|2J4L|J Chain J, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Utp To 2.8 Angstrom
Resolution
pdb|2J4L|K Chain K, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Utp To 2.8 Angstrom
Resolution
pdb|2J4L|L Chain L, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Utp To 2.8 Angstrom
Resolution
Length = 226
Score = 60.5 bits (145), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 97/203 (47%), Gaps = 25/203 (12%)
Query: 2 FQVAIVVGGGNIFRGA-SAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQT 60
F+V IV GGG+ R A G+ + D +G+ A+ +NA + +++ +
Sbjct: 35 FRVGIVTGGGSTARRYIKLAREIGIGEAYLDLLGIWASRLNAYLVMFSLQDLA------- 87
Query: 61 AFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATN 120
+ + E +I+ + G+VV+ G P +T AAL +++ ++ ATN
Sbjct: 88 YMHVPQSLEEFIQDWS-----HGKVVV--TGGFQPGQSTAAVAALVAEASSSKTLVVATN 140
Query: 121 VDGVYDDNPRRNPNARLLDTLTYQE----------VTSKDLSVMDMTAITLCQENNIPVV 170
VDGVY+ +PR + +L+ LT Q+ V + ++D AI + + + I V+
Sbjct: 141 VDGVYEKDPRIYADVKLIPHLTTQDLRKILEGSQSVQAGTYELLDPLAIKIVERSKIRVI 200
Query: 171 VFNLNQPGNIAKAIQGERVGTLI 193
V N + I ++GE V ++I
Sbjct: 201 VMNYRKLNRIIDILKGEEVSSII 223
>pdb|3LL9|A Chain A, X-Ray Structures Of Isopentenyl Phosphate Kinase
pdb|3LL9|B Chain B, X-Ray Structures Of Isopentenyl Phosphate Kinase
Length = 269
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 54/97 (55%), Gaps = 11/97 (11%)
Query: 110 INAEVVLKATNVDGVYDDNPRRNPNARLLDTL-TYQEVTSKDLSV-MDMTA--------I 159
+ E V+ T+VDGVY NP+++P+ARLLD + + ++ S D ++ D+T +
Sbjct: 171 LXPERVILGTDVDGVYTRNPKKHPDARLLDVIGSLDDLESLDGTLNTDVTGGXVGKIREL 230
Query: 160 TLCQENNIPVVVFNLNQPGNIAKAIQGERV-GTLIGG 195
L E + + N PGNI +A+ GE V GT I G
Sbjct: 231 LLLAEKGVESEIINAAVPGNIERALLGEEVRGTRITG 267
>pdb|2BMU|A Chain A, Ump Kinase From Pyrococcus Furiosus Complexed With Its
Substrate Ump And Its Substrate Analog Amppnp
pdb|2BMU|B Chain B, Ump Kinase From Pyrococcus Furiosus Complexed With Its
Substrate Ump And Its Substrate Analog Amppnp
Length = 226
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 88/201 (43%), Gaps = 24/201 (11%)
Query: 3 QVAIVVGGGNIFRG-ASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTA 61
+VA+VVGGG + R A + D+IG+ T NA L A + P
Sbjct: 38 EVAVVVGGGKLARKYIEVAEKFNSSETFKDFIGIQITRANAXLLIAALREKAYPV----- 92
Query: 62 FRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNV 121
V E + L+K I G +P TTD AAL + A++++ TNV
Sbjct: 93 -----VVEDFWEAWKAVQLKK----IPVXGGTHPGHTTDAVAALLAEFLKADLLVVITNV 143
Query: 122 DGVYDDNPRRNPNARLLDTLTYQ---EVTSKDL------SVMDMTAITLCQENNIPVVVF 172
DGVY +P+++P A+ + + E+ K + SV+D A + + I +V
Sbjct: 144 DGVYTADPKKDPTAKKIKKXKPEELLEIVGKGIEKAGSSSVIDPLAAKIIARSGIKTIVI 203
Query: 173 NLNQPGNIAKAIQGERVGTLI 193
++ + I+G+ GT I
Sbjct: 204 GKEDAKDLFRVIKGDHNGTTI 224
>pdb|2BRI|A Chain A, Ump Kinase From Pyrococcus Furiosus Complexed With Its
Substrate Analog Amppnp
pdb|2BRI|B Chain B, Ump Kinase From Pyrococcus Furiosus Complexed With Its
Substrate Analog Amppnp
Length = 225
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 86/201 (42%), Gaps = 24/201 (11%)
Query: 3 QVAIVVGGGNIFRG-ASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTA 61
+VA+VVGGG + R A + D+IG+ T NA L A + P
Sbjct: 37 EVAVVVGGGKLARKYIEVAEKFNSSETFKDFIGIQITRANAXLLIAALREKAYPV----- 91
Query: 62 FRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNV 121
V E + L+K I G +P TTD AAL + A++++ TNV
Sbjct: 92 -----VVEDFWEAWKAVQLKK----IPVXGGTHPGHTTDAVAALLAEFLKADLLVVITNV 142
Query: 122 DGVYDDNPRRNPNA---------RLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVF 172
DGVY +P+++P A LL+ + + SV+D A + + I +V
Sbjct: 143 DGVYTADPKKDPTAKKIKKXKPEELLEIVGKGIEKAGSSSVIDPLAAKIIARSGIKTIVI 202
Query: 173 NLNQPGNIAKAIQGERVGTLI 193
++ + I+G+ GT I
Sbjct: 203 GKEDAKDLFRVIKGDHNGTTI 223
>pdb|4F6T|B Chain B, The Crystal Structure Of The Molybdenum Storage Protein
(Mosto) From Azotobacter Vinelandii Loaded With Various
Polyoxometalates
Length = 268
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 54/103 (52%), Gaps = 4/103 (3%)
Query: 95 PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDL--S 152
P + TD L + + ++ + DG+Y NP+ + +A + ++ E+ +K L S
Sbjct: 163 PPYRTDAGCFLLAEQFGCKQMIFVKDEDGLYTANPKTSKDATFIPRISVDEMKAKGLHDS 222
Query: 153 VMDMTAITLCQ--ENNIPVVVFNLNQPGNIAKAIQGERVGTLI 193
+++ + L Q ++ V V N PGN+ +A+ GE VGT+I
Sbjct: 223 ILEFPVLDLLQSAQHVREVQVVNGLVPGNLTRALAGEHVGTII 265
>pdb|2OGX|B Chain B, The Crystal Structure Of The Molybdenum Storage Protein
From Azotobacter Vinelandii Loaded With
Polyoxotungstates (Wsto)
Length = 270
Score = 47.4 bits (111), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 52/103 (50%), Gaps = 4/103 (3%)
Query: 95 PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDL--S 152
P + TD L + + + + DG+Y NP+ + +A + ++ E +K L S
Sbjct: 165 PPYRTDAGCFLLAEQFGCKQXIFVKDEDGLYTANPKTSKDATFIPRISVDEXKAKGLHDS 224
Query: 153 VMDMTAITLCQ--ENNIPVVVFNLNQPGNIAKAIQGERVGTLI 193
+++ + L Q ++ V V N PGN+ +A+ GE VGT+I
Sbjct: 225 ILEFPVLDLLQSAQHVREVQVVNGLVPGNLTRALAGEHVGTII 267
>pdb|2HMF|A Chain A, Structure Of A Threonine Sensitive Aspartokinase From
Methanococcus Jannaschii Complexed With Mg-Adp And
Aspartate
pdb|2HMF|B Chain B, Structure Of A Threonine Sensitive Aspartokinase From
Methanococcus Jannaschii Complexed With Mg-Adp And
Aspartate
pdb|2HMF|C Chain C, Structure Of A Threonine Sensitive Aspartokinase From
Methanococcus Jannaschii Complexed With Mg-Adp And
Aspartate
pdb|2HMF|D Chain D, Structure Of A Threonine Sensitive Aspartokinase From
Methanococcus Jannaschii Complexed With Mg-Adp And
Aspartate
Length = 469
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 64/144 (44%), Gaps = 21/144 (14%)
Query: 62 FRMSEVAEPYIRRRAVRHLEKGRVVI---FAAGTGNPFFTT------DTAAALRCAEINA 112
F + V ++ R + L++G + + F T + TT D +AAL ++A
Sbjct: 163 FGSARVKRLEVKERLLPLLKEGIIPVVTGFIGTTEEGYITTLGRGGSDYSAALIGYGLDA 222
Query: 113 EVVLKATNVDGVYDDNPRRNPNARLLDTLTY---QEVTSKDLSVMDMTAITLCQENNIPV 169
+++ T+V GVY +PR P AR + L+Y E+ V+ I E IP+
Sbjct: 223 DIIEIWTDVSGVYTTDPRLVPTARRIPKLSYIEAMELAYFGAKVLHPRTIEPAMEKGIPI 282
Query: 170 VVFNLNQPGNIAKAIQGERVGTLI 193
+V N +P E GTLI
Sbjct: 283 LVKNTFEP---------ESEGTLI 297
>pdb|3C1N|C Chain C, Crystal Structure Of Allosteric Inhibition
Threonine-Sensitive Aspartokinase From Methanococcus
Jannaschii With L-Threonine
pdb|3C20|A Chain A, Crystal Structure Of Threonine-Sensitive Aspartokinase
From Methanococcus Jannaschii With L-Aspartate
pdb|3C20|B Chain B, Crystal Structure Of Threonine-Sensitive Aspartokinase
From Methanococcus Jannaschii With L-Aspartate
pdb|3C1M|A Chain A, Cyrstal Structure Of Threonine-Sensitive Aspartokinase
From Methanococcus Jannaschii With Mgamp-Pnp And
L-Aspartate
pdb|3C1M|B Chain B, Cyrstal Structure Of Threonine-Sensitive Aspartokinase
From Methanococcus Jannaschii With Mgamp-Pnp And
L-Aspartate
pdb|3C1M|C Chain C, Cyrstal Structure Of Threonine-Sensitive Aspartokinase
From Methanococcus Jannaschii With Mgamp-Pnp And
L-Aspartate
pdb|3C1M|D Chain D, Cyrstal Structure Of Threonine-Sensitive Aspartokinase
From Methanococcus Jannaschii With Mgamp-Pnp And
L-Aspartate
pdb|3C1N|A Chain A, Crystal Structure Of Allosteric Inhibition
Threonine-Sensitive Aspartokinase From Methanococcus
Jannaschii With L-Threonine
pdb|3C1N|B Chain B, Crystal Structure Of Allosteric Inhibition
Threonine-Sensitive Aspartokinase From Methanococcus
Jannaschii With L-Threonine
pdb|3C1N|D Chain D, Crystal Structure Of Allosteric Inhibition
Threonine-Sensitive Aspartokinase From Methanococcus
Jannaschii With L-Threonine
Length = 473
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 64/144 (44%), Gaps = 21/144 (14%)
Query: 62 FRMSEVAEPYIRRRAVRHLEKGRVVI---FAAGTGNPFFTT------DTAAALRCAEINA 112
F + V ++ R + L++G + + F T + TT D +AAL ++A
Sbjct: 164 FGSARVKRLEVKERLLPLLKEGIIPVVTGFIGTTEEGYITTLGRGGSDYSAALIGYGLDA 223
Query: 113 EVVLKATNVDGVYDDNPRRNPNARLLDTLTY---QEVTSKDLSVMDMTAITLCQENNIPV 169
+++ T+V GVY +PR P AR + L+Y E+ V+ I E IP+
Sbjct: 224 DIIEIWTDVSGVYTTDPRLVPTARRIPKLSYIEAMELAYFGAKVLHPRTIEPAMEKGIPI 283
Query: 170 VVFNLNQPGNIAKAIQGERVGTLI 193
+V N +P E GTLI
Sbjct: 284 LVKNTFEP---------ESEGTLI 298
>pdb|3K4O|A Chain A, Crystal Structure Of Isopentenyl Phosphate Kinase From
Methanocaldococcus Jannaschii
pdb|3K4O|B Chain B, Crystal Structure Of Isopentenyl Phosphate Kinase From
Methanocaldococcus Jannaschii
pdb|3K4Y|A Chain A, Crystal Structure Of Isopentenyl Phosphate Kinase From M.
Jannaschii In Complex With Ipp
pdb|3K4Y|B Chain B, Crystal Structure Of Isopentenyl Phosphate Kinase From M.
Jannaschii In Complex With Ipp
pdb|3K52|A Chain A, Crystal Structure Of Isopentenyl Phosphate Kinase From M.
Jannaschii In Complex With Ip
pdb|3K52|B Chain B, Crystal Structure Of Isopentenyl Phosphate Kinase From M.
Jannaschii In Complex With Ip
pdb|3K56|A Chain A, Crystal Structure Of Isopentenyl Phosphate Kinase From M.
Jannaschii In Complex With Ipp Beta-S
pdb|3K56|B Chain B, Crystal Structure Of Isopentenyl Phosphate Kinase From M.
Jannaschii In Complex With Ipp Beta-S
Length = 266
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 50/111 (45%), Gaps = 3/111 (2%)
Query: 86 VIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNP--RRNPNARLLDTLTY 143
++ G + D E+ A+++L AT+VDGV DN +R + L Y
Sbjct: 152 IVIDDKNGYRIISGDDIVPYLANELKADLILYATDVDGVLIDNKPIKRIDKNNIYKILNY 211
Query: 144 QE-VTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLI 193
S D++ I + ++N VFN N+ NI KA+ GE GT I
Sbjct: 212 LSGSNSIDVTGGMKYKIEMIRKNKCRGFVFNGNKANNIYKALLGEVEGTEI 262
>pdb|4F6T|A Chain A, The Crystal Structure Of The Molybdenum Storage Protein
(Mosto) From Azotobacter Vinelandii Loaded With Various
Polyoxometalates
Length = 244
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 58/148 (39%), Gaps = 21/148 (14%)
Query: 64 MSEVAEPYIRRRAVRHLEKGRVVIFAA----------GTGNPFFTTDTAAALRCAEINAE 113
+S V P + + HL R V+ +A G+ P DT A L A
Sbjct: 93 VSYVEHPTVADQLAIHLSATRAVVGSAFPPYHHHEFPGSRIPPHRADTGAFLLADAFGAA 152
Query: 114 VVLKATNVDGVYDDNP--------RRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQEN 165
+ NVDG+Y +P R P D + D +++D+ A E
Sbjct: 153 GLTIVENVDGIYTADPNGPDRGQARFLPETSATDLAKSEGPLPVDRALLDVMATARHIER 212
Query: 166 NIPVVVFNLNQPGNIAKAIQGERVGTLI 193
V V N PG + A++GE VGTLI
Sbjct: 213 ---VQVVNGLVPGRLTAALRGEHVGTLI 237
>pdb|2OGX|A Chain A, The Crystal Structure Of The Molybdenum Storage Protein
From Azotobacter Vinelandii Loaded With
Polyoxotungstates (Wsto)
Length = 276
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 58/148 (39%), Gaps = 21/148 (14%)
Query: 64 MSEVAEPYIRRRAVRHLEKGRVVIFAA----------GTGNPFFTTDTAAALRCAEINAE 113
+S V P + + HL R V+ +A G+ P DT A L A
Sbjct: 125 VSYVEHPTVADQLAIHLSATRAVVGSAFPPYHHHEFPGSRIPPHRADTGAFLLADAFGAA 184
Query: 114 VVLKATNVDGVYDDNP--------RRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQEN 165
+ NVDG+Y +P R P D + D +++D+ A E
Sbjct: 185 GLTIVENVDGIYTADPNGPDRGQARFLPETSATDLAKSEGPLPVDRALLDVXATARHIER 244
Query: 166 NIPVVVFNLNQPGNIAKAIQGERVGTLI 193
V V N PG + A++GE VGTLI
Sbjct: 245 ---VQVVNGLVPGRLTAALRGEHVGTLI 269
>pdb|3TVI|A Chain A, Crystal Structure Of Clostridium Acetobutylicum Aspartate
Kinase (Caak): An Important Allosteric Enzyme For
Industrial Amino Acids Production
pdb|3TVI|B Chain B, Crystal Structure Of Clostridium Acetobutylicum Aspartate
Kinase (Caak): An Important Allosteric Enzyme For
Industrial Amino Acids Production
pdb|3TVI|C Chain C, Crystal Structure Of Clostridium Acetobutylicum Aspartate
Kinase (Caak): An Important Allosteric Enzyme For
Industrial Amino Acids Production
pdb|3TVI|D Chain D, Crystal Structure Of Clostridium Acetobutylicum Aspartate
Kinase (Caak): An Important Allosteric Enzyme For
Industrial Amino Acids Production
pdb|3TVI|E Chain E, Crystal Structure Of Clostridium Acetobutylicum Aspartate
Kinase (Caak): An Important Allosteric Enzyme For
Industrial Amino Acids Production
pdb|3TVI|F Chain F, Crystal Structure Of Clostridium Acetobutylicum Aspartate
Kinase (Caak): An Important Allosteric Enzyme For
Industrial Amino Acids Production
pdb|3TVI|G Chain G, Crystal Structure Of Clostridium Acetobutylicum Aspartate
Kinase (Caak): An Important Allosteric Enzyme For
Industrial Amino Acids Production
pdb|3TVI|H Chain H, Crystal Structure Of Clostridium Acetobutylicum Aspartate
Kinase (Caak): An Important Allosteric Enzyme For
Industrial Amino Acids Production
pdb|3TVI|I Chain I, Crystal Structure Of Clostridium Acetobutylicum Aspartate
Kinase (Caak): An Important Allosteric Enzyme For
Industrial Amino Acids Production
pdb|3TVI|J Chain J, Crystal Structure Of Clostridium Acetobutylicum Aspartate
Kinase (Caak): An Important Allosteric Enzyme For
Industrial Amino Acids Production
pdb|3TVI|K Chain K, Crystal Structure Of Clostridium Acetobutylicum Aspartate
Kinase (Caak): An Important Allosteric Enzyme For
Industrial Amino Acids Production
pdb|3TVI|L Chain L, Crystal Structure Of Clostridium Acetobutylicum Aspartate
Kinase (Caak): An Important Allosteric Enzyme For
Industrial Amino Acids Production
Length = 446
Score = 35.8 bits (81), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 30/115 (26%), Positives = 57/115 (49%), Gaps = 14/115 (12%)
Query: 99 TDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLS-----V 153
+D ++ A +NA++ T+V G +PR N + + ++Y+E+ ++LS V
Sbjct: 188 SDVTGSIISAGVNADLYENWTDVSGFLXADPRIVENPKTISKISYKEL--RELSYXGATV 245
Query: 154 MDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGE-----RVGTLIG--GTWNSTV 201
+ AI +++ IP+ + N N+P + I + +GT+ G G N TV
Sbjct: 246 LHEEAIFPVKDSGIPINIKNTNKPSDPGTLILSDTHKEINLGTITGIAGKKNFTV 300
>pdb|3LKK|A Chain A, Crystal Structure Of The Isopentenyl Phosphate Kinase
Substr Complex
pdb|3LKK|B Chain B, Crystal Structure Of The Isopentenyl Phosphate Kinase
Substr Complex
Length = 249
Score = 35.4 bits (80), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 25/42 (59%)
Query: 97 FTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLL 138
++ D A + +V + T+VDG+Y +P+RNP+A LL
Sbjct: 145 YSGDDIMADMAELLKPDVAVFLTDVDGIYSKDPKRNPDAVLL 186
>pdb|3LL5|A Chain A, Crystal Structure Of T. Acidophilum Isopentenyl Phosphate
Ki Product Complex
pdb|3LL5|B Chain B, Crystal Structure Of T. Acidophilum Isopentenyl Phosphate
Ki Product Complex
pdb|3LL5|C Chain C, Crystal Structure Of T. Acidophilum Isopentenyl Phosphate
Ki Product Complex
pdb|3LL5|D Chain D, Crystal Structure Of T. Acidophilum Isopentenyl Phosphate
Ki Product Complex
Length = 249
Score = 35.0 bits (79), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 25/42 (59%)
Query: 97 FTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLL 138
++ D A + +V + T+VDG+Y +P+RNP+A LL
Sbjct: 145 YSGDDIXADXAELLKPDVAVFLTDVDGIYSKDPKRNPDAVLL 186
>pdb|3AB4|A Chain A, Crystal Structure Of Feedback Inhibition Resistant Mutant
Of Aspartate Kinase From Corynebacterium Glutamicum In
Complex With Lysine And Threonine
pdb|3AB4|C Chain C, Crystal Structure Of Feedback Inhibition Resistant Mutant
Of Aspartate Kinase From Corynebacterium Glutamicum In
Complex With Lysine And Threonine
pdb|3AB4|E Chain E, Crystal Structure Of Feedback Inhibition Resistant Mutant
Of Aspartate Kinase From Corynebacterium Glutamicum In
Complex With Lysine And Threonine
pdb|3AB4|G Chain G, Crystal Structure Of Feedback Inhibition Resistant Mutant
Of Aspartate Kinase From Corynebacterium Glutamicum In
Complex With Lysine And Threonine
pdb|3AB4|I Chain I, Crystal Structure Of Feedback Inhibition Resistant Mutant
Of Aspartate Kinase From Corynebacterium Glutamicum In
Complex With Lysine And Threonine
pdb|3AB4|K Chain K, Crystal Structure Of Feedback Inhibition Resistant Mutant
Of Aspartate Kinase From Corynebacterium Glutamicum In
Complex With Lysine And Threonine
pdb|3AB4|M Chain M, Crystal Structure Of Feedback Inhibition Resistant Mutant
Of Aspartate Kinase From Corynebacterium Glutamicum In
Complex With Lysine And Threonine
pdb|3AB4|O Chain O, Crystal Structure Of Feedback Inhibition Resistant Mutant
Of Aspartate Kinase From Corynebacterium Glutamicum In
Complex With Lysine And Threonine
Length = 421
Score = 35.0 bits (79), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 40/70 (57%), Gaps = 11/70 (15%)
Query: 119 TNVDGVYDDNPRRNPNARLLDTLTYQE------VTSKDLSVMDMTAITLCQENNIPVVVF 172
++VDGVY +PR PNA+ L+ L+++E V SK ++ + ++ + N+P+ V
Sbjct: 174 SDVDGVYTADPRIVPNAQKLEKLSFEEMLELAAVGSK---ILVLRSVEYARAFNVPLRVR 230
Query: 173 N--LNQPGNI 180
+ N PG +
Sbjct: 231 SSYSNDPGTL 240
>pdb|3AAW|A Chain A, Crystal Structure Of Aspartate Kinase From Corynebacterium
Glutamicum In Complex With Lysine And Threonine
pdb|3AAW|C Chain C, Crystal Structure Of Aspartate Kinase From Corynebacterium
Glutamicum In Complex With Lysine And Threonine
pdb|3AB2|A Chain A, Crystal Structure Of Aspartate Kinase From Corynebacterium
Glutamicum In Complex With Threonine
pdb|3AB2|C Chain C, Crystal Structure Of Aspartate Kinase From Corynebacterium
Glutamicum In Complex With Threonine
pdb|3AB2|E Chain E, Crystal Structure Of Aspartate Kinase From Corynebacterium
Glutamicum In Complex With Threonine
pdb|3AB2|G Chain G, Crystal Structure Of Aspartate Kinase From Corynebacterium
Glutamicum In Complex With Threonine
pdb|3AB2|I Chain I, Crystal Structure Of Aspartate Kinase From Corynebacterium
Glutamicum In Complex With Threonine
pdb|3AB2|K Chain K, Crystal Structure Of Aspartate Kinase From Corynebacterium
Glutamicum In Complex With Threonine
pdb|3AB2|M Chain M, Crystal Structure Of Aspartate Kinase From Corynebacterium
Glutamicum In Complex With Threonine
pdb|3AB2|O Chain O, Crystal Structure Of Aspartate Kinase From Corynebacterium
Glutamicum In Complex With Threonine
Length = 421
Score = 34.7 bits (78), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 40/70 (57%), Gaps = 11/70 (15%)
Query: 119 TNVDGVYDDNPRRNPNARLLDTLTYQE------VTSKDLSVMDMTAITLCQENNIPVVVF 172
++VDGVY +PR PNA+ L+ L+++E V SK ++ + ++ + N+P+ V
Sbjct: 174 SDVDGVYTADPRIVPNAQKLEKLSFEEMLELAAVGSK---ILVLRSVEYARAFNVPLRVR 230
Query: 173 N--LNQPGNI 180
+ N PG +
Sbjct: 231 SSYSNDPGTL 240
>pdb|2AKO|A Chain A, Crystal Structure Of Glutamate 5-Kinase From Campylobacter
Jejuni
pdb|2AKO|B Chain B, Crystal Structure Of Glutamate 5-Kinase From Campylobacter
Jejuni
pdb|2AKO|C Chain C, Crystal Structure Of Glutamate 5-Kinase From Campylobacter
Jejuni
pdb|2AKO|D Chain D, Crystal Structure Of Glutamate 5-Kinase From Campylobacter
Jejuni
Length = 251
Score = 32.3 bits (72), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 13/48 (27%), Positives = 28/48 (58%)
Query: 96 FFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTY 143
F D+ +A +A++++ +++DG YD NP +A+ L+ +T+
Sbjct: 139 FGDNDSLSAYATHFFDADLLVILSDIDGFYDKNPSEFSDAKRLEKITH 186
>pdb|3HZ3|A Chain A, Lactobacillus Reuteri N-Terminally Truncated Glucansucrase
Gtf180(D1025n)-Sucrose Complex
Length = 1039
Score = 32.0 bits (71), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 32/74 (43%)
Query: 50 ESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAE 109
E IG+ T ++++ + A +K R VI G +T DT A + +
Sbjct: 535 EGIGVVISNNTNLKLNDGESVVLHMGAAHKNQKYRAVILTTEDGVKNYTNDTDAPVAYTD 594
Query: 110 INAEVVLKATNVDG 123
N ++ TN+DG
Sbjct: 595 ANGDLHFTNTNLDG 608
>pdb|3KLK|A Chain A, Crystal Structure Of Lactobacillus Reuteri N-Terminally
Truncated Glucansucrase Gtf180 In Triclinic Apo- Form
Length = 1039
Score = 32.0 bits (71), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 32/74 (43%)
Query: 50 ESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAE 109
E IG+ T ++++ + A +K R VI G +T DT A + +
Sbjct: 535 EGIGVVISNNTNLKLNDGESVVLHMGAAHKNQKYRAVILTTEDGVKNYTNDTDAPVAYTD 594
Query: 110 INAEVVLKATNVDG 123
N ++ TN+DG
Sbjct: 595 ANGDLHFTNTNLDG 608
>pdb|3L76|A Chain A, Crystal Structure Of Aspartate Kinase From Synechocystis
pdb|3L76|B Chain B, Crystal Structure Of Aspartate Kinase From Synechocystis
Length = 600
Score = 30.8 bits (68), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 56/120 (46%), Gaps = 16/120 (13%)
Query: 75 RAVRHLEKGRVVIFAAGTG-----NPFFTT------DTAAALRCAEINAEVVLKATNVDG 123
R HL +G+VV+ A G + TT DT+A A + A+ T+V G
Sbjct: 120 RLEHHLREGKVVVVAGFQGISSVEHLEITTLGRGGSDTSAVALAAALKADFCEIYTDVPG 179
Query: 124 VYDDNPRRNPNARLLDTLTYQ---EVTSKDLSVMDMTAITLCQENNIPVVVFN--LNQPG 178
+ +PR P A+L+ +T E+ S V+ A+ + + IP+VV + ++PG
Sbjct: 180 ILTTDPRLVPEAQLMAEITCDEMLELASLGAKVLHPRAVEIARNYGIPLVVRSSWSDEPG 239
>pdb|4A4Z|A Chain A, Crystal Structure Of The S. Cerevisiae Dexh Helicase Ski2
Bound To Amppnp
Length = 997
Score = 30.8 bits (68), Expect = 0.55, Method: Composition-based stats.
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 11 GNIFRGASAAGNSGLDRSSADYIGMLATVMN-AIFLQATMESIGIPTRVQTAFRMS 65
G + A AG GLD + + + ++ A F + TM G+PTR+Q+ FR++
Sbjct: 465 GEFTQMAGRAGRRGLDSTGTVIVMAYNSPLSIATFKEVTM---GVPTRLQSQFRLT 517
>pdb|3KLL|A Chain A, Crystal Structure Of Lactobacillus Reuteri N-Terminally
Truncated Glucansucrase Gtf180-Maltose Complex
Length = 1039
Score = 30.4 bits (67), Expect = 0.79, Method: Composition-based stats.
Identities = 19/78 (24%), Positives = 33/78 (42%)
Query: 46 QATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAAL 105
+ E IG+ T ++++ + A +K R VI G +T DT A +
Sbjct: 531 ETRTEGIGVVISNNTNLKLNDGESVVLHXGAAHKNQKYRAVILTTEDGVKNYTNDTDAPV 590
Query: 106 RCAEINAEVVLKATNVDG 123
+ N ++ TN+DG
Sbjct: 591 AYTDANGDLHFTNTNLDG 608
>pdb|2J5V|A Chain A, Glutamate 5-kinase From Escherichia Coli Complexed With
Glutamyl-5-phosphate And Pyroglutamic Acid
pdb|2J5V|B Chain B, Glutamate 5-kinase From Escherichia Coli Complexed With
Glutamyl-5-phosphate And Pyroglutamic Acid
pdb|2J5T|H Chain H, Glutamate 5-Kinase From Escherichia Coli Complexed With
Glutamate
pdb|2J5T|A Chain A, Glutamate 5-Kinase From Escherichia Coli Complexed With
Glutamate
pdb|2J5T|B Chain B, Glutamate 5-Kinase From Escherichia Coli Complexed With
Glutamate
pdb|2J5T|C Chain C, Glutamate 5-Kinase From Escherichia Coli Complexed With
Glutamate
pdb|2J5T|D Chain D, Glutamate 5-Kinase From Escherichia Coli Complexed With
Glutamate
pdb|2J5T|E Chain E, Glutamate 5-Kinase From Escherichia Coli Complexed With
Glutamate
pdb|2J5T|F Chain F, Glutamate 5-Kinase From Escherichia Coli Complexed With
Glutamate
pdb|2J5T|G Chain G, Glutamate 5-Kinase From Escherichia Coli Complexed With
Glutamate
Length = 367
Score = 30.0 bits (66), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 46/106 (43%), Gaps = 14/106 (13%)
Query: 100 DTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLL-------DTL------TYQEV 146
D +AL A+ +L T+ G+Y +PR NP A L+ D L + +
Sbjct: 150 DNLSALAAILAGADKLLLLTDQKGLYTADPRSNPQAELIKDVYGIDDALRAIAGDSVSGL 209
Query: 147 TSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTL 192
+ +S A C+ I ++ ++PG I ++G VGTL
Sbjct: 210 GTGGMSTKLQAADVACRA-GIDTIIAAGSKPGVIGDVMEGISVGTL 254
>pdb|2W21|A Chain A, Crystal Structure Of The Aminoacid Kinase Domain Of The
Glutamate 5 Kinase Of Escherichia Coli
Length = 259
Score = 30.0 bits (66), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 28/106 (26%), Positives = 46/106 (43%), Gaps = 14/106 (13%)
Query: 100 DTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLL-------DTL------TYQEV 146
D +AL A+ +L T+ G+Y +PR NP A L+ D L + +
Sbjct: 150 DNLSALAAILAGADKLLLLTDQKGLYTADPRSNPQAELIKDVYGIDDALRAIAGDSVSGL 209
Query: 147 TSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTL 192
+ +S A C+ I ++ ++PG I ++G VGTL
Sbjct: 210 GTGGMSTKLQAADVACRA-GIDTIIAAGSKPGVIGDVMEGISVGTL 254
>pdb|2PGW|A Chain A, Crystal Structure Of A Putative Muconate Cycloisomerase
From Sinorhizobium Meliloti 1021
pdb|2PGW|B Chain B, Crystal Structure Of A Putative Muconate Cycloisomerase
From Sinorhizobium Meliloti 1021
pdb|2PGW|C Chain C, Crystal Structure Of A Putative Muconate Cycloisomerase
From Sinorhizobium Meliloti 1021
pdb|2PGW|D Chain D, Crystal Structure Of A Putative Muconate Cycloisomerase
From Sinorhizobium Meliloti 1021
pdb|2PGW|E Chain E, Crystal Structure Of A Putative Muconate Cycloisomerase
From Sinorhizobium Meliloti 1021
pdb|2PGW|F Chain F, Crystal Structure Of A Putative Muconate Cycloisomerase
From Sinorhizobium Meliloti 1021
pdb|2PGW|G Chain G, Crystal Structure Of A Putative Muconate Cycloisomerase
From Sinorhizobium Meliloti 1021
pdb|2PGW|H Chain H, Crystal Structure Of A Putative Muconate Cycloisomerase
From Sinorhizobium Meliloti 1021
Length = 384
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 35/127 (27%), Positives = 53/127 (41%), Gaps = 8/127 (6%)
Query: 1 MFQVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATV-MNAIFLQATMESIGIPTRVQ 59
+F + G NI R A+ SG+D + D G LA + ++ + A +++G
Sbjct: 86 IFHQEYLGHGANIXRAANQI-FSGIDXAXWDLQGKLAGLPVHQLLGGAHRKAVGY----- 139
Query: 60 TAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKAT 119
F E AE R AV H + RV G G + AA+R +A + L A
Sbjct: 140 FYFLQGETAEELARDAAVGHAQGERVFYLKVGRGEK-LDLEITAAVRGEIGDARLRLDAN 198
Query: 120 NVDGVYD 126
V+D
Sbjct: 199 EGWSVHD 205
>pdb|2BTY|A Chain A, Acetylglutamate Kinase From Thermotoga Maritima Complexed
With Its Inhibitor Arginine
pdb|2BTY|B Chain B, Acetylglutamate Kinase From Thermotoga Maritima Complexed
With Its Inhibitor Arginine
pdb|2BTY|C Chain C, Acetylglutamate Kinase From Thermotoga Maritima Complexed
With Its Inhibitor Arginine
Length = 282
Score = 27.3 bits (59), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 7/46 (15%)
Query: 100 DTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQE 145
DTAAA + AE ++ T+VDGV D +L+ TLT E
Sbjct: 182 DTAAAEIAKSLMAEKLILLTDVDGVLKD-------GKLISTLTPDE 220
>pdb|2J0U|B Chain B, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0
A Resolution
Length = 374
Score = 27.3 bits (59), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 24/40 (60%)
Query: 72 IRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEIN 111
I++RA++ + KGR VI + +G T + + L+C +I
Sbjct: 27 IQQRAIKQIIKGRDVIAQSQSGTGKTATFSVSVLQCLDIQ 66
>pdb|2J0U|A Chain A, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0
A Resolution
Length = 374
Score = 26.9 bits (58), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 24/40 (60%)
Query: 72 IRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEIN 111
I++RA++ + KGR VI + +G T + + L+C +I
Sbjct: 27 IQQRAIKQIIKGRDVIAQSQSGTGKTATFSVSVLQCLDIQ 66
>pdb|2HXY|A Chain A, Crystal Structure Of Human Apo-Eif4aiii
pdb|2HXY|B Chain B, Crystal Structure Of Human Apo-Eif4aiii
pdb|2HXY|C Chain C, Crystal Structure Of Human Apo-Eif4aiii
pdb|2HXY|D Chain D, Crystal Structure Of Human Apo-Eif4aiii
Length = 391
Score = 26.9 bits (58), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 24/40 (60%)
Query: 72 IRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEIN 111
I++RA++ + KGR VI + +G T + + L+C +I
Sbjct: 42 IQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQ 81
>pdb|2HYI|C Chain C, Structure Of The Human Exon Junction Complex With A
Trapped Dead-Box Helicase Bound To Rna
pdb|2HYI|I Chain I, Structure Of The Human Exon Junction Complex With A
Trapped Dead-Box Helicase Bound To Rna
pdb|3EX7|C Chain C, The Crystal Structure Of Ejc In Its Transition State
pdb|3EX7|H Chain H, The Crystal Structure Of Ejc In Its Transition State
Length = 413
Score = 26.9 bits (58), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 24/40 (60%)
Query: 72 IRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEIN 111
I++RA++ + KGR VI + +G T + + L+C +I
Sbjct: 64 IQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQ 103
>pdb|2XB2|A Chain A, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz-
Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd
Machinery
pdb|2XB2|X Chain X, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz-
Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd
Machinery
Length = 411
Score = 26.9 bits (58), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 24/40 (60%)
Query: 72 IRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEIN 111
I++RA++ + KGR VI + +G T + + L+C +I
Sbjct: 64 IQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQ 103
>pdb|2J0Q|A Chain A, The Crystal Structure Of The Exon Junction Complex At 3.2
A Resolution
pdb|2J0Q|B Chain B, The Crystal Structure Of The Exon Junction Complex At 3.2
A Resolution
pdb|2J0S|A Chain A, The Crystal Structure Of The Exon Junction Complex At 2.2
A Resolution
Length = 410
Score = 26.6 bits (57), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 13/40 (32%), Positives = 24/40 (60%)
Query: 72 IRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEIN 111
I++RA++ + KGR VI + +G T + + L+C +I
Sbjct: 63 IQQRAIKQIIKGRDVIAQSQSGTGKTATFSISVLQCLDIQ 102
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.133 0.378
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,486,329
Number of Sequences: 62578
Number of extensions: 198138
Number of successful extensions: 606
Number of sequences better than 100.0: 49
Number of HSP's better than 100.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 525
Number of HSP's gapped (non-prelim): 51
length of query: 206
length of database: 14,973,337
effective HSP length: 94
effective length of query: 112
effective length of database: 9,091,005
effective search space: 1018192560
effective search space used: 1018192560
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)