Query 028621
Match_columns 206
No_of_seqs 169 out of 1633
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 14:22:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028621.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/028621hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0528 PyrH Uridylate kinase 100.0 3E-39 6.6E-44 260.7 20.6 193 2-195 45-238 (238)
2 PRK00358 pyrH uridylate kinase 100.0 1.1E-38 2.3E-43 262.8 21.6 192 2-194 40-231 (231)
3 PRK14556 pyrH uridylate kinase 100.0 8.9E-39 1.9E-43 263.6 21.0 194 2-195 55-248 (249)
4 PRK14558 pyrH uridylate kinase 100.0 2.9E-38 6.3E-43 260.3 22.0 192 2-196 40-231 (231)
5 TIGR02075 pyrH_bact uridylate 100.0 2.9E-38 6.3E-43 260.6 21.1 192 2-194 41-233 (233)
6 cd04254 AAK_UMPK-PyrH-Ec UMP k 100.0 1.9E-38 4.1E-43 261.4 19.6 192 2-194 40-231 (231)
7 cd04239 AAK_UMPK-like AAK_UMPK 100.0 3.6E-38 7.9E-43 259.4 20.3 192 2-194 38-229 (229)
8 PRK14557 pyrH uridylate kinase 100.0 1.7E-37 3.7E-42 257.5 21.4 197 2-199 44-242 (247)
9 cd04253 AAK_UMPK-PyrH-Pf AAK_U 100.0 4.9E-34 1.1E-38 233.7 19.7 178 2-194 34-221 (221)
10 TIGR02076 pyrH_arch uridylate 100.0 1.7E-33 3.8E-38 230.4 19.6 179 2-194 33-221 (221)
11 cd02115 AAK Amino Acid Kinases 100.0 7.9E-34 1.7E-38 235.2 17.2 191 2-193 30-248 (248)
12 COG1608 Predicted archaeal kin 100.0 1.6E-33 3.4E-38 227.6 16.9 190 3-195 40-252 (252)
13 cd04241 AAK_FomA-like AAK_FomA 100.0 8.1E-33 1.8E-37 230.5 16.9 186 2-193 38-252 (252)
14 cd04255 AAK_UMPK-MosAB AAK_UMP 100.0 3.1E-31 6.7E-36 221.8 20.0 182 2-194 64-262 (262)
15 PRK14058 acetylglutamate/acety 100.0 3.6E-31 7.8E-36 222.5 17.3 185 2-195 29-267 (268)
16 cd04261 AAK_AKii-LysC-BS AAK_A 100.0 9.8E-31 2.1E-35 216.5 18.8 183 2-194 32-239 (239)
17 cd04246 AAK_AK-DapG-like AAK_A 100.0 1.2E-30 2.6E-35 215.9 19.1 183 2-194 32-239 (239)
18 PRK12314 gamma-glutamyl kinase 100.0 2.2E-30 4.7E-35 217.5 20.1 192 2-196 48-265 (266)
19 COG0548 ArgB Acetylglutamate k 100.0 2E-30 4.4E-35 214.8 17.8 187 2-195 35-265 (265)
20 cd04234 AAK_AK AAK_AK: Amino A 100.0 3.5E-30 7.5E-35 211.7 18.4 175 2-194 31-227 (227)
21 cd04242 AAK_G5K_ProB AAK_G5K_P 100.0 5.9E-30 1.3E-34 213.3 19.8 187 2-194 38-251 (251)
22 COG0527 LysC Aspartokinases [A 100.0 1.9E-30 4.2E-35 230.7 16.3 165 26-199 107-293 (447)
23 CHL00202 argB acetylglutamate 100.0 7.2E-30 1.6E-34 216.2 18.1 187 2-194 56-283 (284)
24 TIGR00656 asp_kin_monofn aspar 100.0 1.2E-29 2.5E-34 224.3 19.5 186 2-197 33-245 (401)
25 cd04260 AAK_AKi-DapG-BS AAK_AK 100.0 1.3E-29 2.9E-34 210.3 18.5 161 24-194 63-244 (244)
26 cd04240 AAK_UC AAK_UC: Unchara 100.0 9.9E-30 2.1E-34 205.7 16.0 168 2-193 25-203 (203)
27 PRK13402 gamma-glutamyl kinase 100.0 3.3E-29 7.1E-34 218.3 20.2 194 2-201 44-263 (368)
28 PLN02512 acetylglutamate kinas 100.0 2.9E-29 6.2E-34 214.8 19.4 188 2-195 80-309 (309)
29 PRK08841 aspartate kinase; Val 100.0 3E-29 6.4E-34 220.7 19.8 185 2-196 34-243 (392)
30 cd04251 AAK_NAGK-UC AAK_NAGK-U 100.0 1.1E-29 2.4E-34 212.3 15.4 180 2-193 25-257 (257)
31 cd04245 AAK_AKiii-YclM-BS AAK_ 100.0 3.6E-29 7.8E-34 211.7 17.3 160 26-194 108-288 (288)
32 PRK05429 gamma-glutamyl kinase 100.0 2.1E-28 4.5E-33 214.2 20.1 195 2-201 47-267 (372)
33 cd04244 AAK_AK-LysC-like AAK_A 100.0 7.7E-29 1.7E-33 211.0 16.8 161 25-194 113-298 (298)
34 PRK08210 aspartate kinase I; R 100.0 2.4E-28 5.1E-33 216.2 19.0 163 25-197 66-249 (403)
35 PTZ00489 glutamate 5-kinase; P 100.0 6.5E-28 1.4E-32 201.8 20.5 190 2-196 45-260 (264)
36 PRK00942 acetylglutamate kinas 100.0 1.8E-28 4E-33 207.6 15.8 186 2-196 56-283 (283)
37 cd04250 AAK_NAGK-C AAK_NAGK-C: 100.0 1.5E-28 3.3E-33 207.7 15.2 186 2-193 47-279 (279)
38 cd04249 AAK_NAGK-NC AAK_NAGK-N 100.0 2E-28 4.4E-33 204.1 15.6 182 2-193 32-252 (252)
39 cd04238 AAK_NAGK-like AAK_NAGK 100.0 1.5E-28 3.3E-33 205.2 14.5 183 2-193 31-256 (256)
40 TIGR01027 proB glutamate 5-kin 100.0 8.7E-28 1.9E-32 209.6 19.3 194 2-200 39-258 (363)
41 PRK06635 aspartate kinase; Rev 100.0 5.1E-28 1.1E-32 214.1 18.1 185 2-196 34-243 (404)
42 cd04259 AAK_AK-DapDC AAK_AK-Da 100.0 4.8E-28 1E-32 205.6 16.7 161 25-194 106-295 (295)
43 cd04247 AAK_AK-Hom3 AAK_AK-Hom 100.0 1.3E-27 2.8E-32 203.5 17.0 162 26-196 121-306 (306)
44 cd04257 AAK_AK-HSDH AAK_AK-HSD 100.0 1.1E-27 2.3E-32 203.5 16.2 161 25-194 112-294 (294)
45 PRK07431 aspartate kinase; Pro 100.0 2.1E-27 4.6E-32 219.0 19.5 187 2-198 34-247 (587)
46 cd04243 AAK_AK-HSDH-like AAK_A 100.0 1.2E-27 2.6E-32 203.1 16.2 161 25-194 111-293 (293)
47 cd04256 AAK_P5CS_ProBA AAK_P5C 100.0 4.5E-27 9.8E-32 198.9 18.7 187 2-194 48-284 (284)
48 cd04258 AAK_AKiii-LysC-EC AAK_ 100.0 3.3E-27 7.2E-32 200.0 16.8 161 25-194 108-292 (292)
49 PRK06291 aspartate kinase; Pro 100.0 3.9E-27 8.4E-32 211.8 17.5 163 25-196 117-304 (465)
50 TIGR00657 asp_kinases aspartat 99.9 8.5E-27 1.8E-31 208.5 18.2 159 30-197 105-285 (441)
51 PRK09034 aspartate kinase; Rev 99.9 7.5E-27 1.6E-31 209.3 17.4 163 26-197 108-291 (454)
52 PLN02551 aspartokinase 99.9 1.6E-26 3.4E-31 209.4 16.9 163 25-196 160-349 (521)
53 PRK08373 aspartate kinase; Val 99.9 3E-26 6.4E-31 197.7 17.4 159 27-196 99-280 (341)
54 PRK09084 aspartate kinase III; 99.9 2.6E-26 5.5E-31 205.5 16.6 163 25-197 104-291 (448)
55 TIGR02078 AspKin_pair Pyrococc 99.9 8.7E-26 1.9E-30 193.8 18.6 156 27-197 94-272 (327)
56 PRK05925 aspartate kinase; Pro 99.9 2.8E-26 6.1E-31 204.3 16.0 162 26-196 98-281 (440)
57 cd04252 AAK_NAGK-fArgBP AAK_NA 99.9 7.3E-26 1.6E-30 188.4 16.5 180 2-193 29-248 (248)
58 TIGR01890 N-Ac-Glu-synth amino 99.9 8.3E-26 1.8E-30 201.4 17.1 187 2-198 49-282 (429)
59 PRK09181 aspartate kinase; Val 99.9 2.3E-25 4.9E-30 200.0 17.4 161 26-196 135-312 (475)
60 cd04237 AAK_NAGS-ABP AAK_NAGS- 99.9 3.6E-25 7.8E-30 187.1 16.8 182 2-193 50-280 (280)
61 COG0263 ProB Glutamate 5-kinas 99.9 5.7E-25 1.2E-29 186.7 17.7 194 2-200 45-264 (369)
62 cd04248 AAK_AK-Ectoine AAK_AK- 99.9 4.4E-25 9.5E-30 186.4 16.3 160 25-194 128-304 (304)
63 PRK09466 metL bifunctional asp 99.9 2.3E-25 5E-30 210.6 16.0 162 26-196 118-301 (810)
64 PF00696 AA_kinase: Amino acid 99.9 4E-25 8.7E-30 182.4 13.0 169 2-173 34-242 (242)
65 PRK05279 N-acetylglutamate syn 99.9 1.3E-24 2.9E-29 194.3 17.4 188 2-199 57-295 (441)
66 cd04235 AAK_CK AAK_CK: Carbama 99.9 2.3E-24 4.9E-29 183.2 16.8 186 2-194 42-308 (308)
67 PRK12353 putative amino acid k 99.9 4.2E-24 9.2E-29 183.0 17.5 117 73-195 175-314 (314)
68 TIGR00761 argB acetylglutamate 99.9 1.7E-24 3.7E-29 178.3 14.0 162 2-171 30-231 (231)
69 PRK09436 thrA bifunctional asp 99.9 1.9E-24 4E-29 205.3 15.9 162 26-196 115-298 (819)
70 cd04236 AAK_NAGS-Urea AAK_NAGS 99.9 2E-24 4.4E-29 181.0 14.2 175 2-193 68-271 (271)
71 COG2054 Uncharacterized archae 99.9 4.1E-24 8.9E-29 165.8 14.2 173 3-196 28-211 (212)
72 TIGR01092 P5CS delta l-pyrroli 99.9 3.1E-24 6.7E-29 201.4 15.0 186 2-196 46-276 (715)
73 PRK12352 putative carbamate ki 99.9 9.7E-23 2.1E-27 174.2 18.5 185 2-195 45-315 (316)
74 PRK08961 bifunctional aspartat 99.9 2.2E-23 4.8E-28 199.3 14.1 163 26-197 115-307 (861)
75 TIGR00746 arcC carbamate kinas 99.9 2.5E-22 5.4E-27 171.3 18.3 116 73-194 172-309 (310)
76 PLN02825 amino-acid N-acetyltr 99.9 2E-22 4.4E-27 181.8 16.1 191 2-201 49-370 (515)
77 PRK12454 carbamate kinase-like 99.9 9.1E-22 2E-26 167.2 17.7 117 73-195 175-313 (313)
78 PLN02418 delta-1-pyrroline-5-c 99.9 3E-21 6.4E-26 181.2 19.5 163 32-196 95-284 (718)
79 KOG0456 Aspartate kinase [Amin 99.9 6E-22 1.3E-26 169.4 11.0 166 24-198 186-378 (559)
80 PRK12686 carbamate kinase; Rev 99.9 7.2E-21 1.6E-25 161.9 17.0 116 73-194 173-311 (312)
81 PRK12354 carbamate kinase; Rev 99.9 1.2E-20 2.6E-25 160.0 16.8 120 73-198 165-303 (307)
82 PRK04531 acetylglutamate kinas 99.9 1.1E-20 2.4E-25 166.4 16.9 159 2-196 67-250 (398)
83 KOG1154 Gamma-glutamyl kinase 99.9 2.1E-20 4.7E-25 150.6 14.3 148 46-196 105-276 (285)
84 PRK09411 carbamate kinase; Rev 99.8 1.3E-18 2.8E-23 146.6 17.7 187 2-194 43-296 (297)
85 COG0549 ArcC Carbamate kinase 99.7 2.3E-15 5E-20 124.8 17.0 117 73-195 174-312 (312)
86 KOG2436 Acetylglutamate kinase 98.5 3.6E-07 7.7E-12 81.5 7.2 186 2-196 126-360 (520)
87 COG1778 Low specificity phosph 84.7 1.3 2.9E-05 34.4 3.6 57 116-181 10-66 (170)
88 PF00994 MoCF_biosynth: Probab 74.3 21 0.00046 26.6 7.4 67 39-112 16-84 (144)
89 TIGR02726 phenyl_P_delta pheny 73.7 4.5 9.7E-05 31.7 3.5 62 116-187 9-71 (169)
90 TIGR00177 molyb_syn molybdenum 66.2 51 0.0011 24.7 7.9 65 39-110 26-92 (144)
91 PRK11320 prpB 2-methylisocitra 61.4 1E+02 0.0023 26.3 9.9 69 40-113 28-106 (292)
92 cd01240 PH_beta-ARK Beta adren 60.9 5.3 0.00012 29.1 1.4 26 5-32 3-34 (116)
93 COG0303 MoeA Molybdopterin bio 60.5 50 0.0011 29.6 7.9 71 39-118 202-274 (404)
94 PRK01158 phosphoglycolate phos 60.4 26 0.00056 27.9 5.6 27 157-183 27-53 (230)
95 cd00885 cinA Competence-damage 59.9 66 0.0014 25.0 7.7 68 39-113 18-87 (170)
96 smart00852 MoCF_biosynth Proba 57.8 60 0.0013 23.8 6.9 68 39-112 17-85 (135)
97 PRK03673 hypothetical protein; 56.8 72 0.0016 28.6 8.2 67 40-113 21-89 (396)
98 TIGR02317 prpB methylisocitrat 56.0 1.3E+02 0.0028 25.7 9.7 69 40-113 24-101 (285)
99 PRK01215 competence damage-ind 55.6 79 0.0017 26.6 7.9 68 39-113 22-91 (264)
100 COG1058 CinA Predicted nucleot 54.8 92 0.002 26.2 8.0 67 40-113 21-89 (255)
101 cd00758 MoCF_BD MoCF_BD: molyb 54.8 83 0.0018 23.1 7.4 65 39-110 18-84 (133)
102 COG1707 ACT domain-containing 52.9 47 0.001 26.3 5.6 81 4-90 85-174 (218)
103 cd00886 MogA_MoaB MogA_MoaB fa 52.0 79 0.0017 23.9 6.8 67 39-112 19-89 (152)
104 PLN02151 trehalose-phosphatase 51.6 37 0.00081 29.9 5.5 67 104-185 88-154 (354)
105 PRK14569 D-alanyl-alanine synt 49.4 1.2E+02 0.0025 25.6 8.1 40 1-60 3-42 (296)
106 PRK03669 mannosyl-3-phosphogly 49.0 39 0.00084 28.0 5.1 54 113-185 6-59 (271)
107 TIGR01670 YrbI-phosphatas 3-de 48.4 52 0.0011 24.9 5.3 13 116-128 3-15 (154)
108 PF11760 CbiG_N: Cobalamin syn 48.1 28 0.00061 24.1 3.3 27 84-114 51-77 (84)
109 PRK03670 competence damage-ind 46.1 1.1E+02 0.0024 25.5 7.3 67 39-112 19-88 (252)
110 PLN03017 trehalose-phosphatase 43.8 88 0.0019 27.8 6.6 66 102-185 99-167 (366)
111 cd00887 MoeA MoeA family. Memb 41.2 2E+02 0.0044 25.5 8.6 69 39-115 194-264 (394)
112 TIGR00200 cinA_nterm competenc 40.3 1.8E+02 0.0038 26.2 8.1 66 40-112 20-87 (413)
113 PRK09484 3-deoxy-D-manno-octul 39.4 39 0.00084 26.4 3.4 15 114-128 21-35 (183)
114 TIGR02667 moaB_proteo molybden 38.4 1.4E+02 0.0031 22.9 6.4 66 39-111 21-90 (163)
115 PRK00549 competence damage-ind 37.5 1.5E+02 0.0033 26.6 7.3 68 39-113 19-88 (414)
116 PRK10187 trehalose-6-phosphate 37.2 84 0.0018 26.2 5.3 58 114-185 14-72 (266)
117 PLN02887 hydrolase family prot 37.1 81 0.0018 29.7 5.6 30 156-185 331-360 (580)
118 PRK14501 putative bifunctional 36.4 1.2E+02 0.0025 29.3 6.7 73 100-186 478-551 (726)
119 PF11305 DUF3107: Protein of u 33.3 56 0.0012 22.1 2.9 28 96-123 19-47 (74)
120 PRK05265 pyridoxine 5'-phospha 33.1 1.4E+02 0.0031 24.8 5.8 72 95-184 131-202 (239)
121 PF00113 Enolase_C: Enolase, C 32.6 1.5E+02 0.0033 25.4 6.1 70 41-115 188-257 (295)
122 PRK12702 mannosyl-3-phosphogly 32.5 98 0.0021 26.7 5.0 28 157-184 25-52 (302)
123 PLN02580 trehalose-phosphatase 32.1 1.4E+02 0.003 26.7 6.0 66 105-186 110-176 (384)
124 COG1658 Small primase-like pro 31.3 1.2E+02 0.0027 22.6 4.8 44 74-122 22-65 (127)
125 PLN02423 phosphomannomutase 29.3 1.5E+02 0.0033 24.2 5.5 53 114-186 7-59 (245)
126 PF10686 DUF2493: Protein of u 29.2 54 0.0012 21.7 2.3 13 4-16 34-47 (71)
127 PRK10680 molybdopterin biosynt 28.2 3.6E+02 0.0077 24.2 8.0 70 39-118 203-274 (411)
128 PF04122 CW_binding_2: Putativ 26.5 1.5E+02 0.0032 20.1 4.3 43 159-201 43-85 (92)
129 PRK14690 molybdopterin biosynt 26.2 2.9E+02 0.0064 24.8 7.2 65 39-111 219-285 (419)
130 PTZ00436 60S ribosomal protein 26.1 96 0.0021 26.8 3.7 47 40-87 6-52 (357)
131 PF03740 PdxJ: Pyridoxal phosp 23.7 1E+02 0.0022 25.6 3.4 92 73-187 114-206 (239)
132 COG0148 Eno Enolase [Carbohydr 23.4 2.9E+02 0.0063 24.9 6.3 71 40-115 314-384 (423)
133 PRK08570 rpl19e 50S ribosomal 22.9 1.1E+02 0.0024 23.6 3.2 48 40-88 6-53 (150)
134 PF13417 GST_N_3: Glutathione 22.9 81 0.0018 20.4 2.3 60 45-111 13-72 (75)
135 TIGR01485 SPP_plant-cyano sucr 22.5 3.1E+02 0.0068 22.1 6.2 24 161-184 32-55 (249)
136 PRK14497 putative molybdopteri 22.5 3.2E+02 0.007 25.6 6.8 65 39-111 205-271 (546)
137 PF07859 Abhydrolase_3: alpha/ 22.4 47 0.001 25.8 1.2 10 4-13 1-10 (211)
138 PF13511 DUF4124: Domain of un 22.4 91 0.002 19.3 2.4 27 104-130 4-32 (60)
139 TIGR00559 pdxJ pyridoxine 5'-p 22.3 2.9E+02 0.0064 22.9 5.9 74 95-185 128-201 (237)
140 TIGR02471 sucr_syn_bact_C sucr 22.2 1.5E+02 0.0033 23.7 4.3 24 162-185 26-49 (236)
141 cd01418 Ribosomal_L19e_A Ribos 22.0 1.1E+02 0.0025 23.4 3.1 45 42-87 5-49 (145)
142 TIGR02319 CPEP_Pphonmut carbox 21.9 5.1E+02 0.011 22.2 10.1 68 40-112 27-104 (294)
143 COG0329 DapA Dihydrodipicolina 21.6 5.1E+02 0.011 22.0 8.0 75 42-119 28-107 (299)
144 cd00481 Ribosomal_L19e Ribosom 21.4 1.2E+02 0.0025 23.3 3.1 45 42-87 5-49 (145)
145 PRK15126 thiamin pyrimidine py 20.8 1.8E+02 0.004 23.8 4.5 30 156-185 25-54 (272)
146 PRK10530 pyridoxal phosphate ( 20.7 1.9E+02 0.004 23.5 4.6 29 157-185 27-55 (272)
147 CHL00162 thiG thiamin biosynth 20.3 4.7E+02 0.01 22.2 6.7 44 74-122 179-222 (267)
148 TIGR02463 MPGP_rel mannosyl-3- 20.3 1.2E+02 0.0026 23.9 3.3 29 157-185 23-51 (221)
149 PF02773 S-AdoMet_synt_C: S-ad 20.2 1.5E+02 0.0032 22.5 3.4 31 7-46 25-56 (138)
No 1
>COG0528 PyrH Uridylate kinase [Nucleotide transport and metabolism]
Probab=100.00 E-value=3e-39 Score=260.68 Aligned_cols=193 Identities=62% Similarity=0.991 Sum_probs=183.2
Q ss_pred ceEEEEEcCChhhhhhhhhhcCCCChhhhhHHHHHHHHHHHHHHHHHHHhCCCCceEecccccccccchhHHHHHHHHhh
Q 028621 2 FQVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLE 81 (206)
Q Consensus 2 ~~~iiVhGGG~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~~~~~~~l~~~l~ 81 (206)
+++.||.|||+.+|++..+. .|+++...|++++++|++|+.++++.|+..|+++..+++..+..+.+|++.+...++|+
T Consensus 45 ~eV~iVvGGGni~Rg~~~~~-~g~~r~~~D~mGmlaTvmNal~L~~aL~~~~~~~~v~sai~~~~~~e~~~~~~A~~~l~ 123 (238)
T COG0528 45 VEVAVVVGGGNIARGYIGAA-AGMDRVTADYMGMLATVMNALALQDALERLGVDTRVQSAIAMPQVAEPYSRREAIRHLE 123 (238)
T ss_pred cEEEEEECCCHHHHhHHHHH-cCCchhhhhHHHHHHHHHHHHHHHHHHHhcCCcceecccccCccccCccCHHHHHHHHH
Confidence 58899999999999998666 49999999999999999999999999999999999999988877778888888899999
Q ss_pred CCCEEEEeCCCCCCCCCcHHHHHHHHHhcCCcEEEEeec-cCccccCCCCCCCCCcccccccHHHHhcCCcCcchHHHHH
Q 028621 82 KGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATN-VDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAIT 160 (206)
Q Consensus 82 ~g~ipvi~g~~g~~~~~sD~~A~~lA~~l~A~~li~ltd-V~Gv~~~dP~~~~~a~~i~~i~~~e~~~~g~~~~k~~a~~ 160 (206)
+|+|+|+++++|+|+.++|+.|++.|++++||.++..|+ |||||++||+++|+|+.++++|++|+.+.+..+||+.|+.
T Consensus 124 ~grVvIf~gGtg~P~fTTDt~AALrA~ei~ad~ll~atn~VDGVY~~DPkk~pdA~~~~~Lty~e~l~~~l~vmD~tA~~ 203 (238)
T COG0528 124 KGRVVIFGGGTGNPGFTTDTAAALRAEEIEADVLLKATNKVDGVYDADPKKDPDAKKYDTLTYDEVLKIGLKVMDPTAFS 203 (238)
T ss_pred cCCEEEEeCCCCCCCCchHHHHHHHHHHhCCcEEEEeccCCCceeCCCCCCCCCceecccCCHHHHHHhcCeeecHHHHH
Confidence 999999999999999999999999999999999999995 9999999999999999999999999998889999999999
Q ss_pred HHHhCCCcEEEEcCCCCchHHHHhcCCCcceEEec
Q 028621 161 LCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGG 195 (206)
Q Consensus 161 ~a~~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~~ 195 (206)
.+.++++|++++|.+++++|.+++.|+..||+|.+
T Consensus 204 l~~~~~i~i~Vfn~~~~~~l~~~~~ge~~gT~V~~ 238 (238)
T COG0528 204 LARDNGIPIIVFNINKPGNLKRALKGEEVGTIVEP 238 (238)
T ss_pred HHHHcCCcEEEEeCCCCccHHHHHcCCCCceEecC
Confidence 99999999999999999999999999999999863
No 2
>PRK00358 pyrH uridylate kinase; Provisional
Probab=100.00 E-value=1.1e-38 Score=262.79 Aligned_cols=192 Identities=66% Similarity=1.070 Sum_probs=170.3
Q ss_pred ceEEEEEcCChhhhhhhhhhcCCCChhhhhHHHHHHHHHHHHHHHHHHHhCCCCceEecccccccccchhHHHHHHHHhh
Q 028621 2 FQVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLE 81 (206)
Q Consensus 2 ~~~iiVhGGG~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~~~~~~~l~~~l~ 81 (206)
++++||||||++++++... ..++++...++++++++++|+.+++.+|+++|+++..+++...+.+..++..+.+.++|+
T Consensus 40 ~~vvlV~gGG~~a~~~~~~-~~~~~~~~~~~~~~~~~~l~~~ll~~~l~~~Gi~a~~~~~~~~~~~~~~~~~~~~~~~l~ 118 (231)
T PRK00358 40 VEVAIVVGGGNIFRGYIGA-AAGMDRATADYMGMLATVMNALALQDALERAGVDTRVQSAIPMPQVAEPYIRRRAIRHLE 118 (231)
T ss_pred CeEEEEECCCHHHHHHHHh-hcCCChhhHHHHHHHHHHHHHHHHHHHHHHcCCCeEEechhhcccccCcccHHHHHHHHH
Confidence 4799999999998886532 467776678999999999999988999999999998776665555555555567889999
Q ss_pred CCCEEEEeCCCCCCCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccccccHHHHhcCCcCcchHHHHHH
Q 028621 82 KGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITL 161 (206)
Q Consensus 82 ~g~ipvi~g~~g~~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~g~~~~k~~a~~~ 161 (206)
+|.|||++++.++++.+||++|+++|.+|+|++++++|||||||++||+.+|++++|++++++|+.+.|+..+|+.+++.
T Consensus 119 ~g~vPVv~g~~~~~~~ssD~~A~~lA~~l~A~~li~~tdVdGVy~~dP~~~~~a~~i~~i~~~e~~~~g~~~~d~~a~~~ 198 (231)
T PRK00358 119 KGRVVIFAAGTGNPFFTTDTAAALRAEEIGADVLLKATNVDGVYDADPKKDPDAKKYDRLTYDEVLEKGLKVMDATAISL 198 (231)
T ss_pred CCCEEEEECCCCCCCCCchHHHHHHHHHcCCCEEEEeeCcCceEcCCCCCCCCCEEeeEecHHHHHHcCCcchhHHHHHH
Confidence 99999999877788899999999999999999999999999999999999999999999999998777777889999999
Q ss_pred HHhCCCcEEEEcCCCCchHHHHhcCCCcceEEe
Q 028621 162 CQENNIPVVVFNLNQPGNIAKAIQGERVGTLIG 194 (206)
Q Consensus 162 a~~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~ 194 (206)
|.++|++++|+|+++|++|.++++|+..||+|.
T Consensus 199 a~~~~i~v~I~~g~~~~~l~~~l~g~~~GT~i~ 231 (231)
T PRK00358 199 ARDNKIPIIVFNMNKPGNLKRVVKGEHIGTLVS 231 (231)
T ss_pred HHHcCCcEEEECCCCchHHHHHHCCCCCCEEeC
Confidence 999999999999999999999999999999984
No 3
>PRK14556 pyrH uridylate kinase; Provisional
Probab=100.00 E-value=8.9e-39 Score=263.61 Aligned_cols=194 Identities=43% Similarity=0.696 Sum_probs=177.9
Q ss_pred ceEEEEEcCChhhhhhhhhhcCCCChhhhhHHHHHHHHHHHHHHHHHHHhCCCCceEecccccccccchhHHHHHHHHhh
Q 028621 2 FQVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLE 81 (206)
Q Consensus 2 ~~~iiVhGGG~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~~~~~~~l~~~l~ 81 (206)
+++.||.|||+++|+.......|+++...|+++|++|++|+.++...|++.|+++..+++.....+.+++..+.+.++++
T Consensus 55 ~~i~iVvGGGni~Rg~~~~~~~~~~r~~~D~~GmlaT~iNal~l~~~l~~~~~~~~v~sa~~~~~~~e~~~~~~~~~~l~ 134 (249)
T PRK14556 55 VELALVVGGGNILRGGRANFGNKIRRATADSMGMIATMINALALRDMLISEGVDAEVFSAKGVDGLLKVASAHEFNQELA 134 (249)
T ss_pred cEEEEEECCCHHHhCchhhccCCCchhhhhHHHHHHHHHHHHHHHHHHHHcCCCeEEeeccccCcCCCCCCHHHHHHHHh
Confidence 58999999999999953221256999999999999999999999999999999999999987766677777788889999
Q ss_pred CCCEEEEeCCCCCCCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccccccHHHHhcCCcCcchHHHHHH
Q 028621 82 KGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITL 161 (206)
Q Consensus 82 ~g~ipvi~g~~g~~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~g~~~~k~~a~~~ 161 (206)
+|.|+|+.|++|+|+++||++|+++|..++||.++++|||||||++||+++|++++++++++.|..+.+..+|+..|++.
T Consensus 135 ~g~vvi~~gg~G~p~~StD~lAallA~~l~Ad~Lii~TdVDGVYd~DP~~~p~A~~i~~I~~~e~~~~~l~vmd~~A~~~ 214 (249)
T PRK14556 135 KGRVLIFAGGTGNPFVTTDTTASLRAVEIGADALLKATTVNGVYDKDPNKYSDAKRFDKVTFSEVVSKELNVMDLGAFTQ 214 (249)
T ss_pred CCCEEEEECCCCCCcCCcHHHHHHHHHHcCCCEEEEEeCCCccCCCCCCCCCCceEeeEEchhhhcccchHhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999988766677889999999
Q ss_pred HHhCCCcEEEEcCCCCchHHHHhcCCCcceEEec
Q 028621 162 CQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGG 195 (206)
Q Consensus 162 a~~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~~ 195 (206)
+.++|+|++|+|+++|++|.+++.|+..||+|.-
T Consensus 215 a~~~gIpi~I~ng~~~~~L~~~l~Ge~~GT~i~~ 248 (249)
T PRK14556 215 CRDFGIPIYVFDLTQPNALVDAVLDSKYGTWVTL 248 (249)
T ss_pred HHHCCCcEEEECCCCchHHHHHHcCCCCceEEEe
Confidence 9999999999999999999999999999999964
No 4
>PRK14558 pyrH uridylate kinase; Provisional
Probab=100.00 E-value=2.9e-38 Score=260.30 Aligned_cols=192 Identities=43% Similarity=0.741 Sum_probs=168.8
Q ss_pred ceEEEEEcCChhhhhhhhhhcCCCChhhhhHHHHHHHHHHHHHHHHHHHhCCCCceEecccccccccchhHHHHHHHHhh
Q 028621 2 FQVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLE 81 (206)
Q Consensus 2 ~~~iiVhGGG~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~~~~~~~l~~~l~ 81 (206)
++++||||||+|++++.. .++++...+.++++++++|+.++..+|.++|++++.+++......-.....+.+..+|+
T Consensus 40 ~~viiV~GgGs~~~g~~~---~~~~~~~~d~ig~~~~~ln~~~~~~~l~~~gi~a~~~~~~~~~~~~~~~~~~~i~~ll~ 116 (231)
T PRK14558 40 FKIGIVIGAGNLFRGVEL---KELSPTRADQIGMLGTVINALYLKDIFEKSGLKAVIVSQIVNLPSVEPINYDDIELYFR 116 (231)
T ss_pred CeEEEEECccHHHHHHhc---cCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEEeccccccchhhhhhHHHHHHHHH
Confidence 479999999999887652 25677778999999999999888889999999998887642110001123578889999
Q ss_pred CCCEEEEeCCCCCCCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccccccHHHHhcCCcCcchHHHHHH
Q 028621 82 KGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITL 161 (206)
Q Consensus 82 ~g~ipvi~g~~g~~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~g~~~~k~~a~~~ 161 (206)
+|.|||++|+.|.+++++|++|+++|..++|+++++||||||||++||+++|+++++++++++|+.+++...+|++++.+
T Consensus 117 ~g~vpV~~G~~~~~~~~~D~~a~~lA~~l~a~~l~~~tdVdGvy~~dP~~~~~a~~i~~i~~~e~~~~g~~~~d~~a~~~ 196 (231)
T PRK14558 117 AGYIVIFAGGTSNPFFTTDTAAALRAVEMKADILIKATKVDGIYDKDPKKFPDAKKIDHLTFSEAIKMGLKVMDTEAFSI 196 (231)
T ss_pred CCCEEEEECCCCCCCCCcHHHHHHHHHHcCCCEEEEEecCCeeEccCCCCCCCCeEcccccHHHHHHcCcccccHHHHHH
Confidence 99999999988889999999999999999999999999999999999999999999999999999888888899999999
Q ss_pred HHhCCCcEEEEcCCCCchHHHHhcCCCcceEEecC
Q 028621 162 CQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGT 196 (206)
Q Consensus 162 a~~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~~~ 196 (206)
|.++|++++|+|+++|++|.+++.|+..||+|.++
T Consensus 197 a~~~gi~v~I~ng~~~~~l~~~l~g~~~GT~i~~~ 231 (231)
T PRK14558 197 CKKYGITILVINFFEPGNLLKALKGENVGTLVVPD 231 (231)
T ss_pred HHHCCCCEEEEeCCCCCHHHHHHCCCCCcEEeCCC
Confidence 99999999999999999999999999999999763
No 5
>TIGR02075 pyrH_bact uridylate kinase. This protein, also called UMP kinase, converts UMP to UDP by adding a phosphate from ATP. It is the first step in pyrimidine biosynthesis. GTP is an allosteric activator. In a large fraction of all bacterial genomes, the gene tends to be located immediately downstream of elongation factor Ts and upstream of ribosome recycling factor. A related protein family, believed to be equivalent in function and found in the archaea and in spirochetes, is described by a separate model, TIGR02076.
Probab=100.00 E-value=2.9e-38 Score=260.59 Aligned_cols=192 Identities=57% Similarity=0.993 Sum_probs=174.3
Q ss_pred ceEEEEEcCChhhhhhhhhhcCCCChhhhhHHHHHHHHHHHHHHHHHHHhCCCCceEecccccccccchhHHHHHHHHhh
Q 028621 2 FQVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLE 81 (206)
Q Consensus 2 ~~~iiVhGGG~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~~~~~~~l~~~l~ 81 (206)
++++||||||+++++|+ ++++++++...|+++++++++|+.+++..|.++|+++..++++++..+...+..+.++++++
T Consensus 41 ~~vviV~G~Gs~~~~~~-a~~~~~~~~~~d~~g~~~~~l~~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~i~~ll~ 119 (233)
T TIGR02075 41 IEVGIVIGGGNIFRGVS-AKELGIDRVTADYMGMLATVINGLALRDALEKLGVKTRVLSAISMPQICESYIRRKAIKHLE 119 (233)
T ss_pred CeEEEEECCCHHHHHHH-HHhcCCCCccHHHHHHHHHHHHHHHHHHHHHhCCCCcEEeccccCCCCccccCHHHHHHHHH
Confidence 47999999999999987 77799887778999999999999998989999999999999987653333333578888999
Q ss_pred CCCEEEEeCCCCCCCCCcHHHHHHHHHhcCCcEEEEeec-cCccccCCCCCCCCCcccccccHHHHhcCCcCcchHHHHH
Q 028621 82 KGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATN-VDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAIT 160 (206)
Q Consensus 82 ~g~ipvi~g~~g~~~~~sD~~A~~lA~~l~A~~li~ltd-V~Gv~~~dP~~~~~a~~i~~i~~~e~~~~g~~~~k~~a~~ 160 (206)
+|.|||++++.|.++++||++|+++|..|+||+++++|| |||||++||+.+|+++++++++++|+.+.+...+|+.+++
T Consensus 120 ~g~VpV~~g~~g~~~~s~D~~a~~lA~~l~a~~li~~td~VdGvy~~dp~~~~~a~~i~~i~~~e~~~~~~~~~d~~~~~ 199 (233)
T TIGR02075 120 KGKVVIFSGGTGNPFFTTDTAAALRAIEINADVILKGTNGVDGVYTADPKKNKDAKKYETITYNEALKKNLKVMDLTAFA 199 (233)
T ss_pred CCCEEEEECCCCCCCCCchHHHHHHHHHcCCCEEEEeecccCeEEcCCCCCCCCCeECcEecHHHHHhcCHHHHHHHHHH
Confidence 999999998878889999999999999999999999999 9999999999999999999999999877777778999999
Q ss_pred HHHhCCCcEEEEcCCCCchHHHHhcCCCcceEEe
Q 028621 161 LCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIG 194 (206)
Q Consensus 161 ~a~~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~ 194 (206)
.|.++|++++|+|+.+|++|.++++|+.+||+|.
T Consensus 200 ~a~~~~i~v~i~~g~~~~~l~~~l~g~~~GT~i~ 233 (233)
T TIGR02075 200 LARDNNLPIVVFNIDEPGALKKVILGKGIGTLVS 233 (233)
T ss_pred HHHHCCCeEEEEeCCCcchHHHHHCCCCCCEEeC
Confidence 9999999999999999999999999999999984
No 6
>cd04254 AAK_UMPK-PyrH-Ec UMP kinase (UMPK)-Ec, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinase of E. coli (Ec) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial and chloroplast UMPKs (this CD) have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of this CD be
Probab=100.00 E-value=1.9e-38 Score=261.38 Aligned_cols=192 Identities=70% Similarity=1.111 Sum_probs=171.7
Q ss_pred ceEEEEEcCChhhhhhhhhhcCCCChhhhhHHHHHHHHHHHHHHHHHHHhCCCCceEecccccccccchhHHHHHHHHhh
Q 028621 2 FQVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLE 81 (206)
Q Consensus 2 ~~~iiVhGGG~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~~~~~~~l~~~l~ 81 (206)
+++|||||||+|++++ .+++|+.+....++++++++++|+.+++..|+++|+++..+++.+...+......+.++++|+
T Consensus 40 ~~~viVhGgG~~~~~~-~~~~~~~~~~~~d~~g~~~~~~n~~ll~~~L~~~Gv~a~~l~~~~~~~~~~~~~~~~l~~~l~ 118 (231)
T cd04254 40 VEVAIVVGGGNIFRGA-SAAEAGMDRATADYMGMLATVINALALQDALESLGVKTRVMSAIPMQGVAEPYIRRRAIRHLE 118 (231)
T ss_pred CcEEEEECCCcccccc-hhhhcCCCchhhhHHHHHHHHHHHHHHHHHHHHcCCCeEEEcHHHhhhhhcccCHHHHHHHHH
Confidence 4789999999998664 456688877677899999999999999989999999999999987633332223478899999
Q ss_pred CCCEEEEeCCCCCCCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccccccHHHHhcCCcCcchHHHHHH
Q 028621 82 KGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITL 161 (206)
Q Consensus 82 ~g~ipvi~g~~g~~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~g~~~~k~~a~~~ 161 (206)
+|.|||++++.|.+.+++|++|+++|.+|+|++++++|||||||++||+.+|+++++++++++|+.+.+...+|+.+++.
T Consensus 119 ~g~ipV~~g~~G~~~~~~D~~a~~lA~~l~a~~l~~~tdVdGvy~~dp~~~~~a~~i~~i~~~~~~~~~~~~~d~~a~~~ 198 (231)
T cd04254 119 KGRVVIFAGGTGNPFFTTDTAAALRAIEINADVILKATKVDGVYDADPKKNPNAKRYDHLTYDEVLSKGLKVMDATAFTL 198 (231)
T ss_pred CCCEEEEECCcCCCCCCcHHHHHHHHHHcCCCEEEEEeCCCEEEecCCCCCCCcEEeeEecHHHHHhcchhhhHHHHHHH
Confidence 99999999888888999999999999999999999999999999999999999999999999998777777899999999
Q ss_pred HHhCCCcEEEEcCCCCchHHHHhcCCCcceEEe
Q 028621 162 CQENNIPVVVFNLNQPGNIAKAIQGERVGTLIG 194 (206)
Q Consensus 162 a~~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~ 194 (206)
|.++|++++|+|+++|++|.++++|+..||+|.
T Consensus 199 a~~~gi~~~I~~g~~~~~l~~~l~g~~~GT~i~ 231 (231)
T cd04254 199 CRDNNLPIVVFNINEPGNLLKAVKGEGVGTLIS 231 (231)
T ss_pred HHHCCCeEEEEeCCCccHHHHHHCCCCCCEEeC
Confidence 999999999999999999999999999999984
No 7
>cd04239 AAK_UMPK-like AAK_UMPK-like: UMP kinase (UMPK)-like, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis. Regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinases of E. coli (Ec) and Pyrococcus furiosus (Pf) are known to function as homohexamers, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial UMPKs have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Als
Probab=100.00 E-value=3.6e-38 Score=259.38 Aligned_cols=192 Identities=63% Similarity=1.003 Sum_probs=172.1
Q ss_pred ceEEEEEcCChhhhhhhhhhcCCCChhhhhHHHHHHHHHHHHHHHHHHHhCCCCceEecccccccccchhHHHHHHHHhh
Q 028621 2 FQVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLE 81 (206)
Q Consensus 2 ~~~iiVhGGG~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~~~~~~~l~~~l~ 81 (206)
++++||||||+|++++ .+.++++++...+++++.++++|+.+++.+|+++|+++..+++.++..+...+..+.+..+++
T Consensus 38 ~~vvvV~ggG~~a~~~-~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~l~~~Gi~a~~~~~~~~~~~~~~~~~~~l~~~l~ 116 (229)
T cd04239 38 VEVAIVVGGGNIARGY-IAAARGMPRATADYIGMLATVMNALALQDALEKLGVKTRVMSAIPMQGVAEPYIRRRAIRHLE 116 (229)
T ss_pred CEEEEEECCChHHhhH-HHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCHHHHhhhhccccHHHHHHHHh
Confidence 5799999999987654 455678888788999999999999999999999999999999887654433333567889999
Q ss_pred CCCEEEEeCCCCCCCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccccccHHHHhcCCcCcchHHHHHH
Q 028621 82 KGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITL 161 (206)
Q Consensus 82 ~g~ipvi~g~~g~~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~g~~~~k~~a~~~ 161 (206)
+|.|||++|+.|.++++||++|+++|..|+|++|+++|||||||++||+.+|++++|++++++|+.++..+.+|+.+++.
T Consensus 117 ~g~ipVi~g~~g~~~~~sD~~A~~lA~~l~a~~li~~tdVdGvy~~dP~~~~~a~~i~~i~~~e~~~~~~~~~~~~a~~~ 196 (229)
T cd04239 117 KGRIVIFGGGTGNPGFTTDTAAALRAEEIGADVLLKATNVDGVYDADPKKNPDAKKYDRISYDELLKKGLKVMDATALTL 196 (229)
T ss_pred CCCEEEEeCccCCCCCCcHHHHHHHHHHcCCCEEEEEECCCcccCCCCCCCCCCeEEeEEcHHHHHHHhcCCccHHHHHH
Confidence 99999999998888999999999999999999999999999999999999999999999999998877667789999999
Q ss_pred HHhCCCcEEEEcCCCCchHHHHhcCCCcceEEe
Q 028621 162 CQENNIPVVVFNLNQPGNIAKAIQGERVGTLIG 194 (206)
Q Consensus 162 a~~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~ 194 (206)
+.+.|++++|+|+++|++|.++++|+..||+|.
T Consensus 197 ~~~~~i~v~I~~g~~~~~l~~~l~g~~~GT~i~ 229 (229)
T cd04239 197 CRRNKIPIIVFNGLKPGNLLRALKGEHVGTLIE 229 (229)
T ss_pred HHHCCCeEEEECCCChhHHHHHHcCCCCCeEeC
Confidence 999999999999999999999999998999884
No 8
>PRK14557 pyrH uridylate kinase; Provisional
Probab=100.00 E-value=1.7e-37 Score=257.49 Aligned_cols=197 Identities=43% Similarity=0.762 Sum_probs=171.6
Q ss_pred ceEEEEEcCChhhhhhhhhhcCCCChhhhhHHHHHHHHHHHHHHHHHHHh-CCCCceEecccccccccchhHHHHHHHHh
Q 028621 2 FQVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMES-IGIPTRVQTAFRMSEVAEPYIRRRAVRHL 80 (206)
Q Consensus 2 ~~~iiVhGGG~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ll~~~l~~-~gi~a~~l~~~~~~~v~~~~~~~~l~~~l 80 (206)
++++||||||+.+++| .++++++++...|.+++++|++|+.+++.+|++ .+..+..++...+..+.+++....+.+.|
T Consensus 44 ~~vvVVvGgGn~~rg~-~a~~~~~~~~~~D~ig~~g~~lna~ll~~~l~~~~~~~~~i~t~~~~~~~~~~~~~~~~~~~l 122 (247)
T PRK14557 44 IEVSIVIGGGNIFRGH-LAEEWGIDRVEADNIGTLGTIINSLMLRGVLTSKTNKEVRVMTSIPFNAVAEPYIRLRAVHHL 122 (247)
T ss_pred CeEEEEECCcHHHHHH-HHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHhhhCCceeEEeccccccccchhhHHHHHHHH
Confidence 6899999999988876 577789988889999999999999999999987 36766556555444443444344567779
Q ss_pred hCCCEEEEeCCCCCCCCCcHHHHHHHHHhcCCcEEEEee-ccCccccCCCCCCCCCcccccccHHHHhcCCcCcchHHHH
Q 028621 81 EKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKAT-NVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAI 159 (206)
Q Consensus 81 ~~g~ipvi~g~~g~~~~~sD~~A~~lA~~l~A~~li~lt-dV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~g~~~~k~~a~ 159 (206)
++|.|||++|+.|.+++++|++|+++|.+++||.++++| |||||||+||+.+|+|++|+++++.|+...+...|+..|+
T Consensus 123 ~~g~VvV~~G~~g~~~~stD~lAallA~~l~Ad~li~~ttdVdGvY~~DP~~~~~Ak~i~~i~~~e~~~~~~~~~~~~A~ 202 (247)
T PRK14557 123 DNGYIVIFGGGNGQPFVTTDYPSVQRAIEMNSDAILVAKQGVDGVFTSDPKHNKSAKMYRKLNYNDVVRQNIQVMDQAAL 202 (247)
T ss_pred hCCCEEEEECCcCCCccChHHHHHHHHHHhCCCEEEEecCCcCEeECCCCCCCCCCEEeeEEChhhhcccCHHHHHHHHH
Confidence 999999999998999999999999999999999999994 9999999999999999999999998876545667899999
Q ss_pred HHHHhCCCcEEEEcCCCCchHHHHhcCCCcceEEecCCCC
Q 028621 160 TLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGTWNS 199 (206)
Q Consensus 160 ~~a~~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~~~~~~ 199 (206)
+.|.++|++++|+|+++|++|.++++|+..||+|.+.+..
T Consensus 203 ~~a~~~gi~v~I~ng~~~~~l~~~l~g~~~GT~i~~~~~~ 242 (247)
T PRK14557 203 LLARDYNLPAHVFNFDEPGVMRRICLGEHVGTLINDDASL 242 (247)
T ss_pred HHHHHCCCcEEEEeCCCChHHHHHHcCCCCcEEEecCccc
Confidence 9999999999999999999999999999999999887654
No 9
>cd04253 AAK_UMPK-PyrH-Pf AAK_UMPK-PyrH-Pf: UMP kinase (UMPK)-Pf, the mostly archaeal uridine monophosphate kinase (uridylate kinase) enzymes that catalyze UMP phosphorylation and play a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinase of Pyrococcus furiosus (Pf) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial UMPKs have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs (this CD) appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of thi
Probab=100.00 E-value=4.9e-34 Score=233.69 Aligned_cols=178 Identities=33% Similarity=0.522 Sum_probs=155.2
Q ss_pred ceEEEEEcCChhhhhhh-hhhcCCCChhhhhHHHHHHHHHHHHHHHHHHHhCCCCceEecccccccccchhHHHHHHHHh
Q 028621 2 FQVAIVVGGGNIFRGAS-AAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHL 80 (206)
Q Consensus 2 ~~~iiVhGGG~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~~~~~~~l~~~l 80 (206)
.+++||||||+|++.+. .++++++++...|++++.++++|..+++.+++ +|+++++++ .+.+.++|
T Consensus 34 ~~iiiV~GgG~~a~~~~~~~~~~~~~~~~~d~~g~~~~~ln~~~~~~~l~-~~~~~~~~~------------~~~~~~~l 100 (221)
T cd04253 34 HKVAVVVGGGRLAREYISVARKLGASEAFLDEIGIMATRLNARLLIAALG-DAYPPVPTS------------YEEALEAM 100 (221)
T ss_pred CEEEEEECCCHHHHHHHHHHHHcCCCHHHHHHhcCHHHHHHHHHHHHHHh-cCCCcCCCC------------HHHHHHHH
Confidence 47899999999988765 44557777777899999999999999999876 788776442 24567889
Q ss_pred hCCCEEEEeCCCCCCCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccccccHHHHhcC--------Cc-
Q 028621 81 EKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK--------DL- 151 (206)
Q Consensus 81 ~~g~ipvi~g~~g~~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~--------g~- 151 (206)
++|.+||++|+. +..++|++|+++|.+|+|++++++|||||||++||+.+|++++|++++++|+.++ |.
T Consensus 101 ~~g~vpv~~G~~--~~~s~D~~a~~lA~~l~a~~li~~tdVdGVy~~dP~~~~~a~~i~~i~~~e~~~~~~~~~~~~g~~ 178 (221)
T cd04253 101 FTGKIVVMGGTE--PGQSTDAVAALLAERLGADLLINATNVDGVYSKDPRKDPDAKKFDRLSADELIDIVGKSSWKAGSN 178 (221)
T ss_pred HcCCeEEEECCC--CCCccHHHHHHHHHHcCCCEEEEEeCCCeeECCCCCCCCCCeEeeEeCHHHHHHHccCCCcCCCCC
Confidence 999999999873 5689999999999999999999999999999999999999999999999888754 22
Q ss_pred CcchHHHHHHHHhCCCcEEEEcCCCCchHHHHhcCCCcceEEe
Q 028621 152 SVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIG 194 (206)
Q Consensus 152 ~~~k~~a~~~a~~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~ 194 (206)
+.+|+.+++.+.++|++++|+|+++|++|.++|+|+..||.|.
T Consensus 179 ~~~d~~a~~~~~~~gi~~~I~~g~~p~~l~~~l~g~~~GT~I~ 221 (221)
T cd04253 179 EPFDPLAAKIIERSGIKTIVVDGRDPENLERALKGEFVGTIIE 221 (221)
T ss_pred cchHHHHHHHHHHCCCeEEEECCCCccHHHHHHCCCCCCeEeC
Confidence 3569999999999999999999999999999999999999983
No 10
>TIGR02076 pyrH_arch uridylate kinase, putative. This family consists of the archaeal and spirochete proteins most closely related to bacterial uridylate kinases (TIGR02075), an enzyme involved in pyrimidine biosynthesis. Members are likely, but not known, to be functionally equivalent to their bacterial counterparts. However, substantial sequence differences suggest that regulatory mechanisms may be different; the bacterial form is allosterically regulated by GTP.
Probab=100.00 E-value=1.7e-33 Score=230.39 Aligned_cols=179 Identities=34% Similarity=0.531 Sum_probs=155.1
Q ss_pred ceEEEEEcCChhhhhhh-hhhcCCCChhhhhHHHHHHHHHHHHHHHHHHHhCCCCceEecccccccccchhHHHHHHHHh
Q 028621 2 FQVAIVVGGGNIFRGAS-AAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHL 80 (206)
Q Consensus 2 ~~~iiVhGGG~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~~~~~~~l~~~l 80 (206)
++++||||||++++.+. ..++++++....|++++.++++|..++..+|+..++++...+. ....+++
T Consensus 33 ~~viiV~ggG~~a~~~~~~~~~~~~~~~~~~~~g~~~~~ln~~~l~~ll~~~~~~~~~~~~------------~~~~~~l 100 (221)
T TIGR02076 33 HKVGVVVGGGKTARRYIGVARELGASETFLDEIGIDATRLNAMLLIAALGDDAYPKVPENF------------EEALEAM 100 (221)
T ss_pred CeEEEEECCcHHHHHHHHHHHHcCCCHHHHHHhhhHHHHHHHHHHHHHHHhcCCCCcCCCH------------HHHHHHH
Confidence 47999999999998874 5566777877889999999999999999988877888764432 2345678
Q ss_pred hCCCEEEEeCCCCCCCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccccccHHHHhcC------CcC--
Q 028621 81 EKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK------DLS-- 152 (206)
Q Consensus 81 ~~g~ipvi~g~~g~~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~------g~~-- 152 (206)
..|.+||++|+ .+.+++|++|+++|.+++|++++++|||||||++||+++|++++|++++++|+.++ +.+
T Consensus 101 ~~g~ipv~~G~--~~~~s~D~~A~~lA~~l~A~~li~ltdVdGvy~~dP~~~~~a~~i~~i~~~e~~~~~~~~~~~~g~~ 178 (221)
T TIGR02076 101 SLGKIVVMGGT--HPGHTTDAVAALLAEFSKADLLINATNVDGVYDKDPKKDPDAKKFDKLTPEELVEIVGSSSVKAGSN 178 (221)
T ss_pred HcCCEEEEcCC--CCCCCcHHHHHHHHHHcCCCEEEEEeCCCcccCCCCCCCCCCeEeeEECHHHHHHHhcCCCccCCCC
Confidence 88999999986 36789999999999999999999999999999999999999999999999887653 222
Q ss_pred -cchHHHHHHHHhCCCcEEEEcCCCCchHHHHhcCCCcceEEe
Q 028621 153 -VMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIG 194 (206)
Q Consensus 153 -~~k~~a~~~a~~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~ 194 (206)
.+|+.+++.+.+.+++++|+|+++|++|.++++|+..||.|.
T Consensus 179 ~~~~~~a~~~~~~~~i~v~I~~g~~~~~l~~~l~g~~~GT~i~ 221 (221)
T TIGR02076 179 EVVDPLAAKIIERSKIRTIVVNGRDPENLEKVLKGEHVGTIIE 221 (221)
T ss_pred ceeHHHHHHHHHHCCCcEEEECCCCccHHHHHHCCCCCCeEeC
Confidence 459999999999999999999999999999999999999983
No 11
>cd02115 AAK Amino Acid Kinases (AAK) superfamily, catalytic domain; present in such enzymes like N-acetylglutamate kinase (NAGK), carbamate kinase (CK), aspartokinase (AK), glutamate-5-kinase (G5K) and UMP kinase (UMPK). The AAK superfamily includes kinases that phosphorylate a variety of amino acid substrates. These kinases catalyze the formation of phosphoric anhydrides, generally with a carboxylate, and use ATP as the source of the phosphoryl group; are involved in amino acid biosynthesis. Some of these kinases control the process via allosteric feed-back inhibition.
Probab=100.00 E-value=7.9e-34 Score=235.19 Aligned_cols=191 Identities=27% Similarity=0.354 Sum_probs=162.1
Q ss_pred ceEEEEEcCChhhhhhhhhh--------cCCCChhhhhHHHHHHHHHHHHHHHHHHHhCCCCceEecccccccccch---
Q 028621 2 FQVAIVVGGGNIFRGASAAG--------NSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEP--- 70 (206)
Q Consensus 2 ~~~iiVhGGG~~~~~~~~~~--------~~~l~~~~~~~~~~~~~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~~--- 70 (206)
+++|||||||++++...... .++.+....+.+...++.++..++..+|+++|+++..+++.+...+...
T Consensus 30 ~~~viV~ggg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~a~~~~~~~~~~~~~~~~~ 109 (248)
T cd02115 30 GRVVVVHGAGPQITDELLAHGELLGYARGLRITDRETDALAAMGEGMSNLLIAAALEQHGIKAVPLDLTQAGFASPNQGH 109 (248)
T ss_pred CCEEEEECCCCCcCHHHHHHHHhhhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEchHHcCeEeCCCCC
Confidence 47999999999966643211 1234455567778888899999999999999999999999876554311
Q ss_pred ------hHHHHHHHHhhCCCEEEEeCCCC--------CCCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCc
Q 028621 71 ------YIRRRAVRHLEKGRVVIFAAGTG--------NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNAR 136 (206)
Q Consensus 71 ------~~~~~l~~~l~~g~ipvi~g~~g--------~~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~ 136 (206)
...+.++++|++|.|||++|+.+ .+++++|++|+.+|.+|+|++|+|+|||||||++||+.+|+++
T Consensus 110 ~g~~~~~~~~~l~~~l~~~~ipVv~g~~~~~~~~~~~~~~~~sD~~A~~lA~~l~A~~li~~tdV~Gv~~~dP~~~~~a~ 189 (248)
T cd02115 110 VGKITKVSTDRLKSLLENGILPILSGFGGTDEKETGTLGRGGSDSTAALLAAALKADRLVILTDVDGVYTADPRKVPDAK 189 (248)
T ss_pred cccceeeCHHHHHHHHhCCcEEEecCeEeccCCceeeecCCCHHHHHHHHHHHcCCCEEEEEecCCeeecCCCCcCCcCe
Confidence 12578899999999999999732 2579999999999999999999999999999999999999999
Q ss_pred ccccccHHHHhcC---CcCcchHHHHHHHHhCCCcEEEEcCCCCchHHHHhcCCCcceEE
Q 028621 137 LLDTLTYQEVTSK---DLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLI 193 (206)
Q Consensus 137 ~i~~i~~~e~~~~---g~~~~k~~a~~~a~~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i 193 (206)
+|++++++|+.++ |.+.+|++++..+.++|++++|+|+++|++| ++|++++.||+|
T Consensus 190 ~i~~i~~~e~~~l~~~g~~~~k~~a~~~~~~~~~~v~I~~~~~~~~l-~~~~~~~~GT~I 248 (248)
T cd02115 190 LLSELTYEEAAELAYAGAMVLKPKAADPAARAGIPVRIANTENPGAL-ALFTPDGGGTLI 248 (248)
T ss_pred ECCcCCHHHHHHHHHcCCCccCHHHHHHHHHcCCcEEEEeCCCcccc-cccCCCCCCCCC
Confidence 9999999887764 6677899999999999999999999999999 999999999986
No 12
>COG1608 Predicted archaeal kinase [General function prediction only]
Probab=100.00 E-value=1.6e-33 Score=227.56 Aligned_cols=190 Identities=28% Similarity=0.414 Sum_probs=152.0
Q ss_pred eEEEEEcCChhhhhhhhhhcCCCC-------hhhhhHHHHHHHHHHHHHHHHHHHhCCCCceEeccccccc-ccc-hhH-
Q 028621 3 QVAIVVGGGNIFRGASAAGNSGLD-------RSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSE-VAE-PYI- 72 (206)
Q Consensus 3 ~~iiVhGGG~~~~~~~~~~~~~l~-------~~~~~~~~~~~~~~~~~ll~~~l~~~gi~a~~l~~~~~~~-v~~-~~~- 72 (206)
++||||||||| ||+.|++|+++ +.-...+.-...++|..++.. |.+.|+++++..|.+... -++ .+.
T Consensus 40 ~livVHGgGSF--GHp~Ak~~~~~~~~~~~s~~G~~~~~~am~~L~~~V~~~-l~~~Gv~av~~~P~s~~~~~gr~~~~~ 116 (252)
T COG1608 40 KLIVVHGGGSF--GHPAAKEFGLEGLKNYLSPLGFSLTHLAMLELNSIVVDA-LLDAGVRAVSVVPISFSTFNGRILYTY 116 (252)
T ss_pred cEEEEecCccc--cCHHHHHhCccccccccCccchHHHHHHHHHHHHHHHHH-HHhcCCccccccCcceeecCCceeech
Confidence 57899999999 99999999992 111122333445899988887 557999998766665421 111 122
Q ss_pred HHHHHHHhhCCCEEEEeCC------CCCCCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccccccHHHH
Q 028621 73 RRRAVRHLEKGRVVIFAAG------TGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEV 146 (206)
Q Consensus 73 ~~~l~~~l~~g~ipvi~g~------~g~~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~~i~~~e~ 146 (206)
.+.++.+|+.|++||+.|+ .|..++|.|.++.+||+.|++|+++|+|||||||+++|.+.|+++.++++.....
T Consensus 117 l~~i~~~l~~gfvPvl~GDVv~d~~~g~~IiSGDdIv~~LA~~l~pd~v~f~tdVdGVy~~~p~~~p~~~~l~~i~~~~~ 196 (252)
T COG1608 117 LEAIKDALEKGFVPVLYGDVVPDDDNGYEIISGDDIVLHLAKELKPDRVIFLTDVDGVYDRDPGKVPDARLLSEIEGRVA 196 (252)
T ss_pred HHHHHHHHHcCCEeeeecceEEcCCCceEEEeccHHHHHHHHHhCCCEEEEEecCCceecCCCCcCccccchhhhhhhhh
Confidence 5788999999999999995 2456799999999999999999999999999999999998999999888876432
Q ss_pred hcC-C----cCcc--hHHHHHHHHhCCCcEEEEcCCCCchHHHHhcCCCcceEEec
Q 028621 147 TSK-D----LSVM--DMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGG 195 (206)
Q Consensus 147 ~~~-g----~~~~--k~~a~~~a~~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~~ 195 (206)
..- + +++| |++++..+.+.+.+++++|+++|++|.++++|+.+||.|.+
T Consensus 197 ~~gs~~~DVTGGi~~Kl~~~~~~~~~~~~vyi~ng~~~~ni~~~l~G~~vGT~I~~ 252 (252)
T COG1608 197 LGGSGGTDVTGGIAKKLEALLEIARYGKEVYIFNGNKPENIYRALRGENVGTRIDG 252 (252)
T ss_pred hcCcCcccchhhHHHHHHHHHHHHhcCceEEEECCCCHHHHHHHhcCCCCceEecC
Confidence 211 1 3445 99999999999999999999999999999999999999863
No 13
>cd04241 AAK_FomA-like AAK_FomA-like: This CD includes a fosfomycin biosynthetic gene product, FomA, and similar proteins found in a wide range of organisms. Together, the fomA and fomB genes in the fosfomycin biosynthetic gene cluster of Streptomyces wedmorensis confer high-level fosfomycin resistance. FomA and FomB proteins converted fosfomycin to fosfomycin monophosphate and fosfomycin diphosphate in the presence of ATP and a magnesium ion, indicating that FomA and FomB catalyzed phosphorylations of fosfomycin and fosfomycin monophosphate, respectively. FomA and related sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK).
Probab=100.00 E-value=8.1e-33 Score=230.47 Aligned_cols=186 Identities=23% Similarity=0.354 Sum_probs=150.5
Q ss_pred ceEEEEEcCChhhhhhhhhhcCCCCh-------hhhhHHHHHHHHHHHHHHHHHHHhCCCCceEecccccccccch----
Q 028621 2 FQVAIVVGGGNIFRGASAAGNSGLDR-------SSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEP---- 70 (206)
Q Consensus 2 ~~~iiVhGGG~~~~~~~~~~~~~l~~-------~~~~~~~~~~~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~~---- 70 (206)
+++|||||||++ +|.+++++++++ ..+........++|..+++. |.++|+++.++++.++......
T Consensus 38 ~~vvlVhGgg~~--~~~~~~~~g~~~g~~~~~~~~l~~~~~~~~~ln~~~~~~-l~~~g~~a~~l~~~~~~~~~~g~~~~ 114 (252)
T cd04241 38 EKLVLVHGGGSF--GHPKAKEYGLPDGDGSFSAEGVAETHEAMLELNSIVVDA-LLEAGVPAVSVPPSSFFVTENGRIVS 114 (252)
T ss_pred CCEEEEECCCcc--cCHHHHHhCCCcCCCchhhhhHHHHHHHHHHHHHHHHHH-HHHCCCCeEEEChHHeEEecCCeeee
Confidence 579999999999 666778888763 11233334456899887775 6779999999999886433211
Q ss_pred hHHHHHHHHhhCCCEEEEeCCC-----C-CCCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccccccHH
Q 028621 71 YIRRRAVRHLEKGRVVIFAAGT-----G-NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQ 144 (206)
Q Consensus 71 ~~~~~l~~~l~~g~ipvi~g~~-----g-~~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~~i~~~ 144 (206)
...+.++++|++|.|||++|+. + ..++++|++|+++|.+|+|++|+|+|||||||++|| |++++|++++++
T Consensus 115 ~~~~~l~~ll~~g~iPVi~~~~~~~~~~~~~~~~~D~~A~~lA~~l~A~~li~ltdv~Gv~~~~P---~~~~~i~~i~~~ 191 (252)
T cd04241 115 FDLEVIKELLDRGFVPVLHGDVVLDEGGGITILSGDDIVVELAKALKPERVIFLTDVDGVYDKPP---PDAKLIPEIDVG 191 (252)
T ss_pred ecHHHHHHHHhCCCEEEEcCCeEecCCCCeEEeChHHHHHHHHHHcCCCEEEEEeCCCeeECCCC---CCCeEcceeCcc
Confidence 1257899999999999998841 2 356899999999999999999999999999999999 789999999986
Q ss_pred HHhcC----------CcCcc--hHHHHHHHHhCCCcEEEEcCCCCchHHHHhcCCCcceEE
Q 028621 145 EVTSK----------DLSVM--DMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLI 193 (206)
Q Consensus 145 e~~~~----------g~~~~--k~~a~~~a~~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i 193 (206)
++.++ .+++| |+++|..+.++|++++|+++++|++|.++++|+.+||+|
T Consensus 192 ~~~~~~~~~~~~~~~~tGGm~~Kl~aa~~a~~~Gv~v~I~~g~~~~~l~~~l~g~~~GT~i 252 (252)
T cd04241 192 SLEDILAALGSAGTDVTGGMAGKIEELLELARRGIEVYIFNGDKPENLYRALLGNFIGTRI 252 (252)
T ss_pred chHHHHHhcCcCCccccCCHHHHHHHHHHHHhcCCeEEEEeCCCHHHHHHHHcCCCCceEC
Confidence 54432 12345 999999999999999999999999999999999999986
No 14
>cd04255 AAK_UMPK-MosAB AAK_UMPK-MosAB: This CD includes the alpha and beta subunits of the Mo storage protein (MosA and MosB) which are related to uridine monophosphate kinase (UMPK) enzymes that catalyze the phosphorylation of UMP by ATP, yielding UDP, and playing a key role in pyrimidine nucleotide biosynthesis. The Mo storage protein from the nitrogen-fixing bacterium, Azotobacter vinelandii, is characterized as an alpha4-beta4 octamer containing a polynuclear molybdenum-oxide cluster which is ATP-dependent to bind Mo and pH-dependent to release Mo. These and related bacterial sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK).
Probab=99.98 E-value=3.1e-31 Score=221.82 Aligned_cols=182 Identities=25% Similarity=0.342 Sum_probs=147.7
Q ss_pred ceEEEEEcCChhhhhhh-hhhcCCCChhhhhHHHHHHHHHHHHHHHHHHHhCCCCceEecccccccccchhHHHHHHHHh
Q 028621 2 FQVAIVVGGGNIFRGAS-AAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHL 80 (206)
Q Consensus 2 ~~~iiVhGGG~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~~~~~~~l~~~l 80 (206)
++++||||||++++.+. .+.+++++....+.+++.++++|..++..++..+|++++.. . . .+.++.+|
T Consensus 64 ~~vilV~GGG~~~r~~~~~~~~~g~~~~~~~~~~~aa~~ln~lv~~~~l~~~g~~~i~~--~--------~-~~~l~~lL 132 (262)
T cd04255 64 HKLLILTGGGTRARHVYSIGLDLGMPTGVLAKLGASVSEQNAEMLATLLAKHGGSKVGH--G--------D-LLQLPTFL 132 (262)
T ss_pred CcEEEEECCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHcCCCcccc--c--------c-HHHHHHHH
Confidence 47999999999975432 23457888888899999999999999988887889887421 1 1 24688999
Q ss_pred hCCCEEEEeCCC-----------C-CCCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccccccHHHHhc
Q 028621 81 EKGRVVIFAAGT-----------G-NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTS 148 (206)
Q Consensus 81 ~~g~ipvi~g~~-----------g-~~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~~i~~~e~~~ 148 (206)
++|.|||++|+. | .+++|+|++|+++|.+++|++++++|||||||++||+.+|++++|+++++.|+.+
T Consensus 133 ~~g~vPVi~g~~~~~~~~i~~~~g~~~~~~~D~~Aa~lA~~l~ad~li~~TdVdGVy~~dP~~~~~a~~i~~i~~~~~~~ 212 (262)
T cd04255 133 KAGRAPVISGMPPYGLWEHPAEEGRIPPHRTDVGAFLLAEVIGARNLIFVKDEDGLYTADPKKNKKAEFIPEISAAELLK 212 (262)
T ss_pred HCCCeEEEeCCcCCCeeeecCCCccCCCCCcHHHHHHHHHHhCCCEEEEEeccCeeECCCCCCCCCCeEccEeCHHHHHH
Confidence 999999999973 2 4688999999999999999999999999999999999999999999999988765
Q ss_pred C--CcCcchHHHHHHH--HhCCCcEEEEcCCCCchHHHHhcCCCcceEEe
Q 028621 149 K--DLSVMDMTAITLC--QENNIPVVVFNLNQPGNIAKAIQGERVGTLIG 194 (206)
Q Consensus 149 ~--g~~~~k~~a~~~a--~~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~ 194 (206)
+ +...|...+...+ .+..++++|+||++|++|.+++.|+.+||+|+
T Consensus 213 ~~~~~~~~~~~~~~~l~aa~~~~~v~I~~g~~~~~L~~~l~g~~~GT~i~ 262 (262)
T cd04255 213 KDLDDLVLERPVLDLLQNARHVKEVQIVNGLVPGNLTRALRGEHVGTIIR 262 (262)
T ss_pred HhcCCCCCcHHHHHHHHHhCCCCcEEEEeCCCCCHHHHHHcCCCCceEeC
Confidence 4 2223533333222 23346899999999999999999999999985
No 15
>PRK14058 acetylglutamate/acetylaminoadipate kinase; Provisional
Probab=99.97 E-value=3.6e-31 Score=222.53 Aligned_cols=185 Identities=20% Similarity=0.259 Sum_probs=149.9
Q ss_pred ceEEEEEcCChhhhhhhhhhcCCCChhh----------------hhHHHH-HHHHHHHHHHHHHHHhCCCCceEeccccc
Q 028621 2 FQVAIVVGGGNIFRGASAAGNSGLDRSS----------------ADYIGM-LATVMNAIFLQATMESIGIPTRVQTAFRM 64 (206)
Q Consensus 2 ~~~iiVhGGG~~~~~~~~~~~~~l~~~~----------------~~~~~~-~~~~~~~~ll~~~l~~~gi~a~~l~~~~~ 64 (206)
.++|||||||+| .|.+++++++++++ ++.+.+ ++ ++|..+++ .|+++|++++++++++.
T Consensus 29 ~~~VlVHGgg~~--i~~~~~~~gi~~~~~~~~~g~~~rvt~~~~l~~~~~a~~-~ln~~lv~-~L~~~Gv~a~~l~~~~~ 104 (268)
T PRK14058 29 ERVVLVHGGSDE--VNELLERLGIEPRFVTSPSGVTSRYTDRETLEVFIMAMA-LINKQLVE-RLQSLGVNAVGLSGLDG 104 (268)
T ss_pred CCEEEEeCCHHH--HHHHHHHcCCCceEEeCCCCCceEeCCHHHHHHHHHHHH-HHHHHHHH-HHHhCCCCccccCcccC
Confidence 478999999999 55566778876543 233333 45 99999987 58889999999999876
Q ss_pred cccc------------------------ch--hHHHHHHHHhhCCCEEEEeCC----CCC-CCCCcHHHHHHHHHhcCCc
Q 028621 65 SEVA------------------------EP--YIRRRAVRHLEKGRVVIFAAG----TGN-PFFTTDTAAALRCAEINAE 113 (206)
Q Consensus 65 ~~v~------------------------~~--~~~~~l~~~l~~g~ipvi~g~----~g~-~~~~sD~~A~~lA~~l~A~ 113 (206)
+.+. +. ...+.++.+|++|.|||++|+ .|. .++++|.+|+++|.+|+|+
T Consensus 105 ~l~~~~~~~~~~~~~~g~~~~~d~g~~g~v~~v~~~~i~~ll~~g~iPVi~~~~~~~~g~~~~i~~D~~A~~lA~~l~A~ 184 (268)
T PRK14058 105 GLLEGKRKKAVRVVEEGKKKIIRGDYTGKIEEVNTDLLKLLLKAGYLPVVAPPALSEEGEPLNVDGDRAAAAIAGALKAE 184 (268)
T ss_pred CEEEEEEecccccccCCcceeccCCceeEEEEECHHHHHHHHHCCCEEEEeCceECCCCcEEecCHHHHHHHHHHHcCCC
Confidence 3321 11 125889999999999999996 233 3589999999999999999
Q ss_pred EEEEeeccCccccCCCCCCCCCcccccccHHHHhcC-----CcCcchHHHHHHHHhCCC-cEEEEcCCCCchHHHHhcCC
Q 028621 114 VVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK-----DLSVMDMTAITLCQENNI-PVVVFNLNQPGNIAKAIQGE 187 (206)
Q Consensus 114 ~li~ltdV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~-----g~~~~k~~a~~~a~~~gi-~v~I~~g~~~~~l~~~l~g~ 187 (206)
+|+|+|||||||+++|+ ++++|++++++|+.++ |.+..|++++..+.++|+ +++|+|+++|++|.+++.|+
T Consensus 185 ~li~ltdv~Gv~~~~p~---~~~~i~~i~~~e~~~l~~~~tGgM~~Kl~aa~~a~~~Gv~~v~I~~g~~~~~l~~~l~G~ 261 (268)
T PRK14058 185 ALVLLSDVPGLLRDPPD---EGSLIERITPEEAEELSKAAGGGMKKKVLMAAEAVEGGVGRVIIADANVDDPISAALAGE 261 (268)
T ss_pred EEEEEeCChhhccCCCC---CCcCccCcCHHHHHHHhhccCCccHHHHHHHHHHHHcCCCEEEEEcCCCcchHHHHhCCC
Confidence 99999999999999883 4689999999887754 334449999999999999 69999999999999999875
Q ss_pred CcceEEec
Q 028621 188 RVGTLIGG 195 (206)
Q Consensus 188 ~~GT~i~~ 195 (206)
||+|.+
T Consensus 262 --GT~I~~ 267 (268)
T PRK14058 262 --GTVIVN 267 (268)
T ss_pred --ceEEec
Confidence 999975
No 16
>cd04261 AAK_AKii-LysC-BS AAK_AKii-LysC-BS: Amino Acid Kinase Superfamily (AAK), AKii; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine, and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase isoenzyme type, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In this organism and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regulated by the concerted action of lysine and
Probab=99.97 E-value=9.8e-31 Score=216.49 Aligned_cols=183 Identities=26% Similarity=0.323 Sum_probs=149.8
Q ss_pred ceEEEEEcC-Chhhhhhhh-hhcCC--CChhhhhHHHHHHHHHHHHHHHHHHHhCCCCceEecccccccccc-h------
Q 028621 2 FQVAIVVGG-GNIFRGASA-AGNSG--LDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAE-P------ 70 (206)
Q Consensus 2 ~~~iiVhGG-G~~~~~~~~-~~~~~--l~~~~~~~~~~~~~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~-~------ 70 (206)
++++||||| |...+.... .++.. .+...++.+...++++|+.+++..|+++|++++++++.+...+.. .
T Consensus 32 ~~~vvV~sg~g~~~~~l~~~~~~~~~~~~~~~~~~i~a~Ge~~~~~l~~~~l~~~g~~a~~l~~~~~~l~~~~~~~~~~i 111 (239)
T cd04261 32 NQVVVVVSAMGGTTDELIELAKEISPRPPARELDVLLSTGEQVSIALLAMALNRLGIKAISLTGWQAGILTDGHHGKARI 111 (239)
T ss_pred CCEEEEECCCCchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEechhhCCEEecCCCCccee
Confidence 468888886 676665432 11221 244556777778899999999999999999999999998754321 1
Q ss_pred -h-HHHHHHHHhhCCCEEEEeCCCC-----C----CCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccc
Q 028621 71 -Y-IRRRAVRHLEKGRVVIFAAGTG-----N----PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLD 139 (206)
Q Consensus 71 -~-~~~~l~~~l~~g~ipvi~g~~g-----~----~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~ 139 (206)
. ..+.++.++++|.|||++|+.+ . .+++||++|+.+|.+|+|+++++||||||||++||+..|++++++
T Consensus 112 ~~~~~~~l~~ll~~~~ipVi~G~~~~~~~g~~~~l~rg~sD~~A~~lA~~l~A~~lii~tdV~GVy~~dP~~~~~a~~i~ 191 (239)
T cd04261 112 IDIDPDRIRELLEEGDVVIVAGFQGINEDGDITTLGRGGSDTSAVALAAALGADRCEIYTDVDGVYTADPRIVPKARKLD 191 (239)
T ss_pred chhhHHHHHHHHHcCCeEEEcCccccCCCCCEEecCCCChHHHHHHHHHHcCCCEEEEEeCCCCCCCCCCCCCCCceEcc
Confidence 1 2478899999999999999732 1 245899999999999999999999999999999999999999999
Q ss_pred cccHHHHhcC---CcCcchHHHHHHHHhCCCcEEEEcCCCCchHHHHhcCCCcceEEe
Q 028621 140 TLTYQEVTSK---DLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIG 194 (206)
Q Consensus 140 ~i~~~e~~~~---g~~~~k~~a~~~a~~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~ 194 (206)
+++++|+.++ |.+.+|++|+.++.++|+|++|.|+++|+ .||+|.
T Consensus 192 ~i~~~ea~~l~~~G~~~~~~~a~~~~~~~~i~i~I~n~~~~~----------~gt~i~ 239 (239)
T cd04261 192 EISYDEMLEMASLGAKVLHPRSVELAKKYGVPLRVLSSFSEE----------PGTLIT 239 (239)
T ss_pred ccCHHHHHHHHhccccccCHHHHHHHHHcCCeEEEecCCCCC----------CCcEeC
Confidence 9999988864 77889999999999999999999999985 599884
No 17
>cd04246 AAK_AK-DapG-like AAK_AK-DapG-like: Amino Acid Kinase Superfamily (AAK), AK-DapG-like; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional enzymes found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species, as well as, the catalytic AK domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related isoenzymes. In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. The role of the AKI isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulati
Probab=99.97 E-value=1.2e-30 Score=215.93 Aligned_cols=183 Identities=26% Similarity=0.351 Sum_probs=149.3
Q ss_pred ceEEEEEc-CChhhhhhhhhhcC---CCChhhhhHHHHHHHHHHHHHHHHHHHhCCCCceEeccccccccc-ch------
Q 028621 2 FQVAIVVG-GGNIFRGASAAGNS---GLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVA-EP------ 70 (206)
Q Consensus 2 ~~~iiVhG-GG~~~~~~~~~~~~---~l~~~~~~~~~~~~~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~-~~------ 70 (206)
++++|||| ||..++......+. ..+...++.+.+.++.+|+.++...|+++|++++++++.+...+. +.
T Consensus 32 ~~~viV~sg~g~~~~~ll~~~~~~~~~~~~~~~~~i~~~Ge~~~~~~~~~~l~~~g~~a~~l~~~~~~l~~~~~~~~~~~ 111 (239)
T cd04246 32 YQVVVVVSAMGGTTDELIGLAKEVSPRPSPRELDMLLSTGEQISAALLAMALNRLGIKAISLTGWQAGILTDDHHGNARI 111 (239)
T ss_pred CCEEEEECCCCchHHHHHHHHHHhccCCCHHHHHHHHHHhHHHHHHHHHHHHHhCCCCeEEeccccCCEEecCCCCceee
Confidence 46778777 67776665422211 124556677777889999999899999999999999998864332 11
Q ss_pred -h-HHHHHHHHhhCCCEEEEeCCCC---C------CCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccc
Q 028621 71 -Y-IRRRAVRHLEKGRVVIFAAGTG---N------PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLD 139 (206)
Q Consensus 71 -~-~~~~l~~~l~~g~ipvi~g~~g---~------~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~ 139 (206)
. ..+.++.++++|.|||++|+.+ + .++++|++|+.+|.+|+|++|+++|||||||++||+.+|++++++
T Consensus 112 ~~~~~~~l~~ll~~g~ipVi~g~~~~~~~g~~~~l~~g~~D~~A~~lA~~l~A~~li~~tdV~GVy~~dP~~~~~a~~i~ 191 (239)
T cd04246 112 IDIDPKRILEALEEGDVVVVAGFQGVNEDGEITTLGRGGSDTTAVALAAALKADRCEIYTDVDGVYTADPRIVPKARKLD 191 (239)
T ss_pred chhhHHHHHHHHhcCCEEEEcCccccCCCCCEEecCCCChHHHHHHHHHHcCCCEEEEEECCCCCCCCCCCCCCCCeEcc
Confidence 1 2478899999999999999732 1 235899999999999999999999999999999999999999999
Q ss_pred cccHHHHhcC---CcCcchHHHHHHHHhCCCcEEEEcCCCCchHHHHhcCCCcceEEe
Q 028621 140 TLTYQEVTSK---DLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIG 194 (206)
Q Consensus 140 ~i~~~e~~~~---g~~~~k~~a~~~a~~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~ 194 (206)
+++++|+.++ |.+.+|++|+.++.++|+|++|.|+++|+ .||+|+
T Consensus 192 ~l~~~e~~~l~~~G~~~~~~~a~~~a~~~gi~i~i~~~~~~~----------~gt~i~ 239 (239)
T cd04246 192 VISYDEMLEMASLGAKVLHPRSVELAKKYNVPLRVRSSFSEN----------PGTLIT 239 (239)
T ss_pred cCCHHHHHHHHhCCCcccCHHHHHHHHHCCCeEEEecCCCCC----------CCcEeC
Confidence 9999988764 77789999999999999999999999885 599884
No 18
>PRK12314 gamma-glutamyl kinase; Provisional
Probab=99.97 E-value=2.2e-30 Score=217.45 Aligned_cols=192 Identities=20% Similarity=0.276 Sum_probs=148.9
Q ss_pred ceEEE-EEcCChhhhhhhhhhcCCCCh--hhhhHHHHHHHHHHHHHHHHHHHhCCCCceE--ecccccccccchh--HHH
Q 028621 2 FQVAI-VVGGGNIFRGASAAGNSGLDR--SSADYIGMLATVMNAIFLQATMESIGIPTRV--QTAFRMSEVAEPY--IRR 74 (206)
Q Consensus 2 ~~~ii-VhGGG~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~ll~~~l~~~gi~a~~--l~~~~~~~v~~~~--~~~ 74 (206)
+++|| +||++++ ++..++.+..+. ...+.+...++.+...+++.+|+++|+++.. ++..++. -.+.+ ..+
T Consensus 48 ~~vvlV~Sga~~~--g~~~l~~~~~~~~~~~~~a~aa~Gq~~l~~~~~~~~~~~g~~~~q~llT~~~~~-~~~~~~~~~~ 124 (266)
T PRK12314 48 KEVILVSSGAIGA--GLTKLKLDKRPTSLAEKQALAAVGQPELMSLYSKFFAEYGIVVAQILLTRDDFD-SPKSRANVKN 124 (266)
T ss_pred CeEEEEeeCcccc--cceeeccccCCCCHHHHHHHHHHhHHHHHHHHHHHHHHcCCeEEEEEEeccccc-chHHHHHHHH
Confidence 45666 5999999 776554444332 2346667788888999999999999998743 2222221 00011 247
Q ss_pred HHHHHhhCCCEEEEeCC-----CC--CCCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccccccH--HH
Q 028621 75 RAVRHLEKGRVVIFAAG-----TG--NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTY--QE 145 (206)
Q Consensus 75 ~l~~~l~~g~ipvi~g~-----~g--~~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~~i~~--~e 145 (206)
.++.+|+.|.|||++++ .+ ..+++||++|+++|.+++|++|+|+|||||||++||+.+|++++|+++++ .+
T Consensus 125 ~l~~ll~~g~IPVv~~nd~v~~~~~~~~~~~~D~~Aa~lA~~l~Ad~liilTDVdGVy~~dP~~~~~a~~i~~I~~~~~~ 204 (266)
T PRK12314 125 TFESLLELGILPIVNENDAVATDEIDTKFGDNDRLSAIVAKLVKADLLIILSDIDGLYDKNPRINPDAKLRSEVTEITEE 204 (266)
T ss_pred HHHHHHHCCCEEEEcCCCCeeeccccceecchHHHHHHHHHHhCCCEEEEEeCCCcccCCCCCCCCCCeEEEEecCCCHH
Confidence 88899999999999963 12 23899999999999999999999999999999999999999999999875 33
Q ss_pred HhcC--------CcCc--chHHHHHHHHhCCCcEEEEcCCCCchHHHHhcCCCcceEEecC
Q 028621 146 VTSK--------DLSV--MDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGT 196 (206)
Q Consensus 146 ~~~~--------g~~~--~k~~a~~~a~~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~~~ 196 (206)
..+. ++++ .|+++++.|.++|++++|+||++|++|.++++|+..||+|.+.
T Consensus 205 ~~~~~~~~~~~~~tGGM~~Kl~aa~~a~~~gv~v~I~~g~~~~~i~~~l~g~~~GT~i~~~ 265 (266)
T PRK12314 205 ILALAGGAGSKFGTGGMVTKLKAAKFLMEAGIKMVLANGFNPSDILDFLEGESIGTLFAPK 265 (266)
T ss_pred HHHHhccCCCCcccCchHHHHHHHHHHHHCCCeEEEEcCCCchHHHHHHcCCCCceEEccC
Confidence 3221 2334 4999999999999999999999999999999999999999764
No 19
>COG0548 ArgB Acetylglutamate kinase [Amino acid transport and metabolism]
Probab=99.97 E-value=2e-30 Score=214.78 Aligned_cols=187 Identities=21% Similarity=0.276 Sum_probs=153.1
Q ss_pred ceEEEEEcCChhhhhhhhhhcCCCChhh-----------hhHHHH-HHHHHHHHHHHHHHHhCCCCceEeccccc-----
Q 028621 2 FQVAIVVGGGNIFRGASAAGNSGLDRSS-----------ADYIGM-LATVMNAIFLQATMESIGIPTRVQTAFRM----- 64 (206)
Q Consensus 2 ~~~iiVhGGG~~~~~~~~~~~~~l~~~~-----------~~~~~~-~~~~~~~~ll~~~l~~~gi~a~~l~~~~~----- 64 (206)
+++|||||||++++.. .+++++.+.+ ++.+.+ ++..+|..+++. |+++|.+++++++.|.
T Consensus 35 ~~~VvVHGggp~I~~~--l~~~gie~~f~~glRvTd~~tlevv~mvl~G~vNk~iva~-l~~~g~~avGlsg~Dg~li~A 111 (265)
T COG0548 35 IRPVVVHGGGPQIDEM--LAKLGIEPEFVKGLRVTDAETLEVVEMVLGGTVNKEIVAR-LSKHGGQAVGLSGVDGNLVTA 111 (265)
T ss_pred CcEEEEeCCchHHHHH--HHHcCCCCeeeCCEEcCCHHHHHHHHHHHHHHHHHHHHHH-HHHhCCcceeeeecCCCEEEE
Confidence 4679999999999985 4667777655 344444 566999999886 7789999999999883
Q ss_pred -----------ccccchh--HHHHHHHHhhCCCEEEEeCC----CCCC-CCCcHHHHHHHHHhcCCcEEEEeeccCcccc
Q 028621 65 -----------SEVAEPY--IRRRAVRHLEKGRVVIFAAG----TGNP-FFTTDTAAALRCAEINAEVVLKATNVDGVYD 126 (206)
Q Consensus 65 -----------~~v~~~~--~~~~l~~~l~~g~ipvi~g~----~g~~-~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~ 126 (206)
++++++. ..+.++.+++++.|||++|. +|++ ++++|+.|+.+|.+|+|++|+++|||+||++
T Consensus 112 ~~~~~~~~id~g~vG~i~~Vn~~~i~~ll~~~~IpViapia~~~~G~~~NvnaD~~A~~iA~aLkAekLi~ltdv~Gvl~ 191 (265)
T COG0548 112 KKLDVDDGVDLGYVGEIRKVNPELIERLLDNGAIPVIAPIAVDEDGETLNVNADTAAGALAAALKAEKLILLTDVPGVLD 191 (265)
T ss_pred EEcccccccccceeeeEEEECHHHHHHHHhCCCceEEecceECCCCcEEeeCHHHHHHHHHHHcCCCeEEEEeCCccccc
Confidence 2333221 24789999999999999996 4555 4999999999999999999999999999999
Q ss_pred CCCCCCCCCcccccccHHHHhcC---C--cC--cchHHHHHHHHhCCCc-EEEEcCCCCchHH-HHhcCCCcceEEec
Q 028621 127 DNPRRNPNARLLDTLTYQEVTSK---D--LS--VMDMTAITLCQENNIP-VVVFNLNQPGNIA-KAIQGERVGTLIGG 195 (206)
Q Consensus 127 ~dP~~~~~a~~i~~i~~~e~~~~---g--~~--~~k~~a~~~a~~~gi~-v~I~~g~~~~~l~-~~l~g~~~GT~i~~ 195 (206)
++|+ + ++|++++.+|+.++ + .+ ..|+++|..|++.|++ ++|+||+.|+.+. ++|+++++||+|.+
T Consensus 192 ~~~~--~--s~i~~~~~~~~~~li~~~~i~~GMi~Kv~~a~~A~~~Gv~~v~ii~g~~~~~ll~eLFt~~giGT~i~~ 265 (265)
T COG0548 192 DKGD--P--SLISELDAEEAEELIEQGIITGGMIPKVEAALEALESGVRRVHIISGRVPHSLLLELFTRDGIGTMIVR 265 (265)
T ss_pred CCCC--c--eeeccCCHHHHHHHHhcCCccCccHHHHHHHHHHHHhCCCeEEEecCCCcchHHHHHhcCCCcceEecC
Confidence 8762 2 68999999888765 2 23 4499999999999995 9999999999965 89999999999863
No 20
>cd04234 AAK_AK AAK_AK: Amino Acid Kinase Superfamily (AAK), Aspartokinase (AK); this CD includes the N-terminal catalytic domain of aspartokinase (4-L-aspartate-4-phosphotransferase;). AK is the first enzyme in the biosynthetic pathway of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. It also catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind amino acids leading to allosteric regulation of the enzyme. In Escherichia coli, three different aspartokinase isoenzymes are regulated specifically by lysine, methionine, and threonine. AK-HSDHI (ThrA) and AK-HSDHII (MetL) are bifunctional enzymes that consist of an N-terminal AK and a C-terminal homoserine dehyd
Probab=99.97 E-value=3.5e-30 Score=211.72 Aligned_cols=175 Identities=26% Similarity=0.312 Sum_probs=148.0
Q ss_pred ceEEEEEcCChhhhhhhhhhcCCCChhhhhHHHHHHHHHHHHHHHHHHHhCCCCceEecccccccccch---------hH
Q 028621 2 FQVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEP---------YI 72 (206)
Q Consensus 2 ~~~iiVhGGG~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~~---------~~ 72 (206)
++++|||+|+..++..... +. .+..+++.+|+.+++.+|+++|+++..+++.++..+... ..
T Consensus 31 ~~vvvV~Sg~~~~t~~l~~--~~-------~~~s~Ge~~~~~l~~~~l~~~Gi~a~~l~~~~~~~~~~~~~~~~~~~~~~ 101 (227)
T cd04234 31 NRVVVVVSAMGGVTDLLIE--LA-------LLLSFGERLSARLLAAALRDRGIKARSLDARQAGITTDDNHGAARIIEIS 101 (227)
T ss_pred CCEEEEEcCCCcccHHHHH--HH-------HHHHHHHHHHHHHHHHHHHHCCCCeEEeCHHHCCEEcCCccchhhHHHHH
Confidence 5799999888775553311 11 566789999999999999999999999999987655332 12
Q ss_pred HHHHHHHhhC-CCEEEEeCCCC-----C----CCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCccccccc
Q 028621 73 RRRAVRHLEK-GRVVIFAAGTG-----N----PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLT 142 (206)
Q Consensus 73 ~~~l~~~l~~-g~ipvi~g~~g-----~----~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~~i~ 142 (206)
.+.+++++++ |.|||++|+.+ . .+++||++|+.+|.+|+|+++++||||||||++||+.+|++++|++++
T Consensus 102 ~~~l~~~l~~~~~vpVv~g~i~~~~~g~~~~l~rg~sD~~A~~lA~~l~A~~l~~~tdV~Gvy~~dP~~~~~a~~i~~i~ 181 (227)
T cd04234 102 YERLKELLAEIGKVPVVTGFIGRNEDGEITTLGRGGSDYSAAALAAALGADEVEIWTDVDGIYTADPRIVPEARLIPEIS 181 (227)
T ss_pred HHHHHHHHhhCCCEEEecCceecCCCCCEEEeeCCCcHHHHHHHHHHhCCCEEEEEECCCccCCCCCCCCCCceEcCcCC
Confidence 5788889999 99999999632 2 135899999999999999999999999999999999999999999999
Q ss_pred HHHHhcC---CcCcchHHHHHHHHhCCCcEEEEcCCCCchHHHHhcCCCcceEEe
Q 028621 143 YQEVTSK---DLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIG 194 (206)
Q Consensus 143 ~~e~~~~---g~~~~k~~a~~~a~~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~ 194 (206)
++|+.++ |.++||++|++++.++++|++|.|+++|+ ..||+|.
T Consensus 182 ~~e~~~l~~~G~~~~~~~a~~~a~~~~i~i~i~~~~~~~---------~~gT~I~ 227 (227)
T cd04234 182 YDEALELAYFGAKVLHPRAVEPARKANIPIRVKNTFNPE---------APGTLIT 227 (227)
T ss_pred HHHHHHHHhCCccccCHHHHHHHHHcCCeEEEEeCCCCC---------CCCCEeC
Confidence 9998765 77889999999999999999999999987 4699884
No 21
>cd04242 AAK_G5K_ProB AAK_G5K_ProB: Glutamate-5-kinase (G5K) catalyzes glutamate-dependent ATP cleavage; G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, in the first and controlling step of proline (and, in mammals, ornithine) biosynthesis. G5K is subject to feedback allosteric inhibition by proline or ornithine. In microorganisms and plants, proline plays an important role as an osmoprotectant and, in mammals, ornithine biosynthesis is crucial for proper ammonia detoxification, since a G5K mutation has been shown to cause human hyperammonaemia. Microbial G5K generally consists of two domains: a catalytic G5K domain and one PUA (pseudo uridine synthases and archaeosine-specific transglycosylases) domain, and some lack the PUA domain. G5K requires free Mg for activity, it is tetrameric, and it aggregates to higher forms in a proline-dependent way. G5K lacking the PUA domain remains tetrameric, active, and proline-inhibitable, but the Mg requir
Probab=99.97 E-value=5.9e-30 Score=213.29 Aligned_cols=187 Identities=26% Similarity=0.397 Sum_probs=147.0
Q ss_pred ceEEEEEc-CChhhhhhhhhhcCCCChh-----hhhHHHHHHHHHHHHHHHHHHHhCCCCceE--ecccccccccchh--
Q 028621 2 FQVAIVVG-GGNIFRGASAAGNSGLDRS-----SADYIGMLATVMNAIFLQATMESIGIPTRV--QTAFRMSEVAEPY-- 71 (206)
Q Consensus 2 ~~~iiVhG-GG~~~~~~~~~~~~~l~~~-----~~~~~~~~~~~~~~~ll~~~l~~~gi~a~~--l~~~~~~~v~~~~-- 71 (206)
+++||||| +|++ ++. ++++... ..+.+...++.....+++.+|+++|+++.. ++..++..- ..+
T Consensus 38 ~~viiV~sg~~~~--g~~---~~~~~~~~~~~~~~~~~~~~Gq~~l~~~~~~~l~~~Gi~~~q~l~t~~~~~~~-~~~~~ 111 (251)
T cd04242 38 KEVILVSSGAVAA--GRQ---RLGLEKRPKTLPEKQALAAVGQSLLMALYEQLFAQYGIKVAQILLTRDDFEDR-KRYLN 111 (251)
T ss_pred CeEEEEecCchhh--Chh---hhccCcCCCchhHHHHHHHHhHHHHHHHHHHHHHHcCCeEEEEEEehhHhcch-HHHHH
Confidence 47899985 6676 543 2333322 235556678888888889999999999864 322222110 011
Q ss_pred HHHHHHHHhhCCCEEEEeCCC-----CCCCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCccccccc--HH
Q 028621 72 IRRRAVRHLEKGRVVIFAAGT-----GNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLT--YQ 144 (206)
Q Consensus 72 ~~~~l~~~l~~g~ipvi~g~~-----g~~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~~i~--~~ 144 (206)
..+.++.+|++|.|||+++++ +..++++|++|+++|.+|+|++|+|+|||||||++||+.+|++++|++++ ++
T Consensus 112 ~~~~i~~ll~~g~iPVv~~~d~v~~~~~~~~~~D~~A~~lA~~l~Ad~liilTDVdGvy~~dP~~~~~a~~i~~i~~~~~ 191 (251)
T cd04242 112 ARNTLETLLELGVIPIINENDTVATEEIRFGDNDRLSALVAGLVNADLLILLSDVDGLYDKNPRENPDAKLIPEVEEITD 191 (251)
T ss_pred HHHHHHHHHHCCCEEEEcCCCCeeeeccccCChHHHHHHHHHHcCCCEEEEecCcCEEEeCCCCCCCCCeEEEEecCChH
Confidence 247788899999999999731 13578999999999999999999999999999999999999999999999 77
Q ss_pred HHhcC--------CcCcc--hHHHHHHHHhCCCcEEEEcCCCCchHHHHhcCCCcceEEe
Q 028621 145 EVTSK--------DLSVM--DMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIG 194 (206)
Q Consensus 145 e~~~~--------g~~~~--k~~a~~~a~~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~ 194 (206)
|+.++ ++++| |++++..+.++|++++|+|+++|++|.++|+|+..||+|.
T Consensus 192 e~~~~~~~~~~~~~tggm~~Kl~a~~~a~~~gi~v~I~~g~~~~~i~~~l~g~~~GT~i~ 251 (251)
T cd04242 192 EIEAMAGGSGSSVGTGGMRTKLKAARIATEAGIPVVIANGRKPDVLLDILAGEAVGTLFL 251 (251)
T ss_pred HHHHHhcccCcCcccCCcHHHHHHHHHHHHCCCcEEEEcCCCCCHHHHHHcCCCCCeEeC
Confidence 76543 35556 7899999999999999999999999999999999999984
No 22
>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]
Probab=99.97 E-value=1.9e-30 Score=230.72 Aligned_cols=165 Identities=28% Similarity=0.364 Sum_probs=147.7
Q ss_pred ChhhhhHHHHHHHHHHHHHHHHHHHhCCCCceEecccccccccchh---------HHHH-HHHHhhCCCEEEEeCCCCC-
Q 028621 26 DRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPY---------IRRR-AVRHLEKGRVVIFAAGTGN- 94 (206)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~~~---------~~~~-l~~~l~~g~ipvi~g~~g~- 94 (206)
+++..|.+.+.||++|+.+++.+|++.|+++..+++++.+++++.. ..+. +..+++.+.+||++||.|.
T Consensus 107 ~~~~~D~ilS~GE~~Sa~lla~~L~~~Gv~A~~~~~~~~~i~t~~~~~~a~i~~~~~~~~l~~~~~~~~v~Vv~GF~G~~ 186 (447)
T COG0527 107 SPRERDELLSLGERLSAALLAAALNALGVDARSLDGRQAGIATDSNHGNARILDEDSERRLLRLLEEGKVPVVAGFQGIN 186 (447)
T ss_pred CHHHHHHHHhhchHHHHHHHHHHHHhCCCceEEEchHHceeeecCcccccccchhhhhhhHHHHhcCCcEEEecCceeec
Confidence 5567899999999999999999999999999999999988776531 1344 7778999999999999541
Q ss_pred --------CCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccccccHHHHhcC---CcCcchHHHHHHHH
Q 028621 95 --------PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQ 163 (206)
Q Consensus 95 --------~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~---g~~~~k~~a~~~a~ 163 (206)
++++||+.|+.||++|+||++.+||||||||++|||.+|+|++|+++||+|+.++ |++++|+++..++.
T Consensus 187 ~~G~~tTLGRGGSD~SA~~laa~l~Ad~~~I~TDVdGI~TaDPRiVp~Ar~i~~isyeEa~ELA~~GAkVLHprav~pa~ 266 (447)
T COG0527 187 EDGETTTLGRGGSDYSAAALAAALGADEVEIWTDVDGVYTADPRIVPDARLLPEISYEEALELAYLGAKVLHPRAVEPAM 266 (447)
T ss_pred CCCCEEEeCCCcHHHHHHHHHHHcCCCEEEEEECCCCCccCCCCCCCcceEcCccCHHHHHHHHHCCchhcCHHHHHHHH
Confidence 4699999999999999999999999999999999999999999999999999875 89999999999999
Q ss_pred hCCCcEEEEcCCCCchHHHHhcCCCcceEEecCCCC
Q 028621 164 ENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGTWNS 199 (206)
Q Consensus 164 ~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~~~~~~ 199 (206)
+++||++|.|.++|+ ..||+|..+...
T Consensus 267 ~~~Ip~~i~~t~~p~---------~~GTlI~~~~~~ 293 (447)
T COG0527 267 RSGIPLRIKNTFNPD---------APGTLITAETES 293 (447)
T ss_pred hcCCcEEEEecCCCC---------CCceEEecCCcC
Confidence 999999999999997 479999987543
No 23
>CHL00202 argB acetylglutamate kinase; Provisional
Probab=99.97 E-value=7.2e-30 Score=216.22 Aligned_cols=187 Identities=17% Similarity=0.200 Sum_probs=149.0
Q ss_pred ceEEEEEcCChhhhhhhhhhcCCCChhh-----------hhHHHH-HHHHHHHHHHHHHHHhCCCCceEecccccccc--
Q 028621 2 FQVAIVVGGGNIFRGASAAGNSGLDRSS-----------ADYIGM-LATVMNAIFLQATMESIGIPTRVQTAFRMSEV-- 67 (206)
Q Consensus 2 ~~~iiVhGGG~~~~~~~~~~~~~l~~~~-----------~~~~~~-~~~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v-- 67 (206)
.++|||||||+| .|.+++++++++++ ++.+.+ ++.++|..+++. |+++|++++++++.+...+
T Consensus 56 ~~~VlVHGgg~~--i~~~~~~~g~~~~~~~G~rvT~~~~l~~~~~~l~g~ln~~lv~~-L~~~Gv~av~l~~~d~~~i~a 132 (284)
T CHL00202 56 LKIVVVHGGGPE--INFWLKQLNISPKFWNGIRVTDKVTMEIVEMVLAGKVNKDLVGS-INANGGKAVGLCGKDANLIVA 132 (284)
T ss_pred CcEEEEeCCcHH--HHHHHHHCCCCCEeECCcccCCHHHHHHHHHHHhhHHHHHHHHH-HHhCCCCeeeeeeccCCEEEE
Confidence 478999999999 55577888887644 222322 567899999886 7789999999999875432
Q ss_pred -----------cch--hHHHHHHHHhhCCCEEEEeCC----CCCC-CCCcHHHHHHHHHhcCCcEEEEeeccCccccCCC
Q 028621 68 -----------AEP--YIRRRAVRHLEKGRVVIFAAG----TGNP-FFTTDTAAALRCAEINAEVVLKATNVDGVYDDNP 129 (206)
Q Consensus 68 -----------~~~--~~~~~l~~~l~~g~ipvi~g~----~g~~-~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP 129 (206)
++. ...+.++.+|++|.|||++|. .|.. .+++|++|+.+|.+|+|++|+|+|||||||+++.
T Consensus 133 ~~~~~~d~~~~G~i~~v~~~~i~~ll~~g~iPVi~~~~~~~~g~~~ni~~D~~A~~lA~~l~Ad~li~lTdv~Gv~~~~~ 212 (284)
T CHL00202 133 RASDKKDLGLVGEIQQVDPQLIDMLLEKNYIPVIASVAADHDGQTYNINADVVAGEIAAKLNAEKLILLTDTPGILADIN 212 (284)
T ss_pred EeCCCcccccceeEEecCHHHHHHHHHCCCEEEECCCccCCCCcEEecCHHHHHHHHHHHhCCCEEEEEeCChhhcCCCC
Confidence 111 125889999999999999985 2333 4799999999999999999999999999998531
Q ss_pred CCCCCCcccccccHHHHhcC---C--cCcc--hHHHHHHHHhCCCc-EEEEcCCCCchH-HHHhcCCCcceEEe
Q 028621 130 RRNPNARLLDTLTYQEVTSK---D--LSVM--DMTAITLCQENNIP-VVVFNLNQPGNI-AKAIQGERVGTLIG 194 (206)
Q Consensus 130 ~~~~~a~~i~~i~~~e~~~~---g--~~~~--k~~a~~~a~~~gi~-v~I~~g~~~~~l-~~~l~g~~~GT~i~ 194 (206)
+| .++|++++++|+.++ | .++| |+++|..+.++|++ ++|++|++|+.+ .++|++++.||+|.
T Consensus 213 --d~-~~~i~~i~~~e~~~l~~~g~~tGGM~~Kl~aa~~a~~~Gv~~v~I~~g~~~~~ll~el~~~~g~GT~i~ 283 (284)
T CHL00202 213 --DP-NSLISTLNIKEARNLASTGIISGGMIPKVNCCIRALAQGVEAAHIIDGKEKHALLLEILTEKGIGSMLV 283 (284)
T ss_pred --CC-CCccccccHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCChHHHHHhcCCCCceEEe
Confidence 22 378999999887654 2 3445 99999999999996 899999999975 79999999999985
No 24
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=99.97 E-value=1.2e-29 Score=224.32 Aligned_cols=186 Identities=21% Similarity=0.275 Sum_probs=156.2
Q ss_pred ceEEEEEcCChhhhhhhh-hhc----CCCChhhhhHHHHHHHHHHHHHHHHHHHhCCCCceEecccccccccch------
Q 028621 2 FQVAIVVGGGNIFRGASA-AGN----SGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEP------ 70 (206)
Q Consensus 2 ~~~iiVhGGG~~~~~~~~-~~~----~~l~~~~~~~~~~~~~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~~------ 70 (206)
+++++|||||..++.... ..+ ...++...+.+.++++++|+.+++.+|+++|+++.++++.+.+.++..
T Consensus 33 ~~~vvV~sg~~~~t~~l~~~~~~~~~~~~~~~~~~~i~~~Ge~~s~~~~~~~l~~~g~~a~~l~~~~~~~~t~~~~~~~~ 112 (401)
T TIGR00656 33 HKVVVVVSAMSGVTDALVEISEKAIRDAITPRERDELVSHGERLSSALFSGALRDLGVKAIWLDGGEAGIITDDNFGNAK 112 (401)
T ss_pred CCEEEEEeCCCCChHHHHHHHHHHhccCCChHHHHHHhhHHHHHHHHHHHHHHHhCCCceEEeccccceEEeCCCCCceE
Confidence 579999999988777542 111 234555678888999999999999999999999999998876544211
Q ss_pred ----hHHHHHHHHhhCCCEEEEeCCC-----CC----CCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcc
Q 028621 71 ----YIRRRAVRHLEKGRVVIFAAGT-----GN----PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARL 137 (206)
Q Consensus 71 ----~~~~~l~~~l~~g~ipvi~g~~-----g~----~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~ 137 (206)
...+.++.+++.|.|||++|+. |. .+++||++|+.+|.+|+|+++++||||||||++||+.+|++++
T Consensus 113 ~~~~~~~~~l~~~l~~~~vpVi~g~~~~~~~g~~~~lgrg~sD~~A~~lA~~l~A~~l~i~tdV~Gv~~~DP~~~~~a~~ 192 (401)
T TIGR00656 113 IDIIATEERLLPLLEEGIIVVVAGFQGATEKGYTTTLGRGGSDYTAALLAAALKADRVDIYTDVPGVYTTDPRVVEAAKR 192 (401)
T ss_pred eeecchHHHHHHHHhCCCEEEecCcceeCCCCCEeecCCCcHHHHHHHHHHHcCCCEEEEEECCCCCCcCCCCCCCCcEE
Confidence 1237889999999999999973 22 2468999999999999999999999999999999999999999
Q ss_pred cccccHHHHhcC---CcCcchHHHHHHHHhCCCcEEEEcCCCCchHHHHhcCCCcceEEecCC
Q 028621 138 LDTLTYQEVTSK---DLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGTW 197 (206)
Q Consensus 138 i~~i~~~e~~~~---g~~~~k~~a~~~a~~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~~~~ 197 (206)
+++++++|+.++ |..++|++|+.+|.++++|++|.|+++|+ .||+|.++.
T Consensus 193 i~~ls~~ea~~l~~~G~~v~~~~a~~~a~~~~i~i~i~~~~~~~----------~gT~I~~~~ 245 (401)
T TIGR00656 193 IDKISYEEALELATFGAKVLHPRTVEPAMRSGVPIEVRSSFDPE----------EGTLITNSM 245 (401)
T ss_pred CCccCHHHHHHHHHcCCcccCHHHHHHHHHCCCeEEEEECCCCC----------CCeEEEeCc
Confidence 999999999875 78889999999999999999999999985 499998753
No 25
>cd04260 AAK_AKi-DapG-BS AAK_AKi-DapG-BS: Amino Acid Kinase Superfamily (AAK), AKi-DapG; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional class enzyme found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species. In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and two bet
Probab=99.97 E-value=1.3e-29 Score=210.32 Aligned_cols=161 Identities=29% Similarity=0.394 Sum_probs=136.6
Q ss_pred CCChhhhhHHHHHHHHHHHHHHHHHHHhCCCCceEecccccccccch--------h-HHHHHHHHhhCCCEEEEeCC---
Q 028621 24 GLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEP--------Y-IRRRAVRHLEKGRVVIFAAG--- 91 (206)
Q Consensus 24 ~l~~~~~~~~~~~~~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~~--------~-~~~~l~~~l~~g~ipvi~g~--- 91 (206)
.+++..++.+.+.++.++..++.++|+++|+++..+++.+.+.+... . ..+.++.+++.|.|||++|+
T Consensus 63 ~~t~~~~~~~~~~Ge~~~~~~~~~~l~~~Gi~a~~l~~~~~~lit~~~~~~~~v~~~~~~~l~~ll~~g~VPVv~g~~~~ 142 (244)
T cd04260 63 DISPRELDLLMSCGEIISAVVLTSTLRAQGLKAVALTGAQAGILTDDNYSNAKIIKVNPKKILSALKEGDVVVVAGFQGV 142 (244)
T ss_pred CCCHHHHHHHHHHhHHHHHHHHHHHHHhCCCCeEEechHHcCEEecCCCCceeeeccCHHHHHHHHhCCCEEEecCCccc
Confidence 34555677787889999998999999999999999998876554211 1 24678899999999999997
Q ss_pred C--CCC----CCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccccccHHHHhcC---CcCcchHHHHHHH
Q 028621 92 T--GNP----FFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLC 162 (206)
Q Consensus 92 ~--g~~----~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~---g~~~~k~~a~~~a 162 (206)
+ |.. ++++|++|+.+|.+|+|+++++||||||||++||+.+|++++|++++++|+.++ |...+|+.|++++
T Consensus 143 ~~~g~~~~l~rg~sD~~A~~lA~~l~A~~l~~~tDV~GVy~~dP~~~~~a~~i~~i~~~e~~~l~~~g~~v~~~~a~~~~ 222 (244)
T cd04260 143 TEDGEVTTLGRGGSDTTAAALGAALNAEYVEIYTDVDGIMTADPRVVPNARILDVVSYNEVFQMAHQGAKVIHPRAVEIA 222 (244)
T ss_pred CCCCCEEEeCCCchHHHHHHHHHHcCCCEEEEEECCCcCCcCCCCCCCCCeEcccCCHHHHHHHHHcCchhcCHHHHHHH
Confidence 2 221 358999999999999999999999999999999999999999999999988875 6778899999999
Q ss_pred HhCCCcEEEEcCCCCchHHHHhcCCCcceEEe
Q 028621 163 QENNIPVVVFNLNQPGNIAKAIQGERVGTLIG 194 (206)
Q Consensus 163 ~~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~ 194 (206)
.+.++|++|.|+++|. .||+|+
T Consensus 223 ~~~~i~v~I~~~~~~~----------~gt~i~ 244 (244)
T cd04260 223 MQANIPIRIRSTMSEN----------PGTLIT 244 (244)
T ss_pred HHcCCeEEEecCCCCC----------CCCEeC
Confidence 9999999999999874 599884
No 26
>cd04240 AAK_UC AAK_UC: Uncharacterized (UC) amino acid kinase-like proteins found mainly in archaea and a few bacteria. Sequences in this CD are members of the Amino Acid Kinase (AAK) superfamily.
Probab=99.97 E-value=9.9e-30 Score=205.68 Aligned_cols=168 Identities=24% Similarity=0.321 Sum_probs=140.2
Q ss_pred ceEEEEEcCChhhhhhh-hhhcCCCChhhhhHHHHHHHHHHHHHHHHHHHhCCCCceEecccccccccchhHHHHHHHHh
Q 028621 2 FQVAIVVGGGNIFRGAS-AAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHL 80 (206)
Q Consensus 2 ~~~iiVhGGG~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~~~~~~~l~~~l 80 (206)
.+++||.|||+|+|.++ .++++|+++...|+|++++|++|+.+++..+...+++ ..+.+..++
T Consensus 25 ~~v~iV~GGG~~A~~~r~~~~~~g~~~~~ad~mgilat~~na~~l~~~~~~~~~~----------------~~~~~~~~~ 88 (203)
T cd04240 25 GGVVIVPGGGPFADVVRRYQERKGLSDAAAHWMAILAMEQYGYLLADLEPRLVAR----------------TLAELTDVL 88 (203)
T ss_pred CCEEEEcCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHhccCCccccC----------------CHHHHHHHH
Confidence 57999999999988776 4467999999999999999999999977533221111 124677889
Q ss_pred hCCCEEEEeCC--------CC-CCCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccccccHHHHhcCCc
Q 028621 81 EKGRVVIFAAG--------TG-NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDL 151 (206)
Q Consensus 81 ~~g~ipvi~g~--------~g-~~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~g~ 151 (206)
..|.+||+.|. .+ .+++++|++|+++|..++|++|+++|||||||++| ++++++++..|+.. .
T Consensus 89 ~~g~ipV~~P~~~~~~~~~~~~~~~~ttD~lAa~lA~~l~A~~Li~ltdVdGVy~~d------a~~i~~i~~~e~~~--~ 160 (203)
T cd04240 89 ERGKIAILLPYRLLLDTDPLPHSWEVTSDSIAAWLAKKLGAKRLVIVTDVDGIYEKD------GKLVNEIAAAELLG--E 160 (203)
T ss_pred HCCCcEEEeCchhhcccCCCCcccccCHHHHHHHHHHHcCCCEEEEEeCCccccCCC------CcCccccCHHHhCC--C
Confidence 99999999985 11 35699999999999999999999999999999864 78999999988753 5
Q ss_pred CcchHHHHHHHHhCCCcEEEEcCCCCchHHHHhcCC-CcceEE
Q 028621 152 SVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGE-RVGTLI 193 (206)
Q Consensus 152 ~~~k~~a~~~a~~~gi~v~I~~g~~~~~l~~~l~g~-~~GT~i 193 (206)
+.++..+++.+.++|++++|+|+++|++|.+++.|+ ..||.|
T Consensus 161 ~~id~~~~~~~~~~gi~v~I~~g~~~~~l~~~l~g~~~~GT~I 203 (203)
T cd04240 161 TSVDPAFPRLLTKYGIRCYVVNGDDPERVLAALRGREGVGTRI 203 (203)
T ss_pred CeehhhHHHHHHhCCCeEEEECCCCccHHHHHHCCCCCCCCCC
Confidence 566776778889999999999999999999999998 789975
No 27
>PRK13402 gamma-glutamyl kinase; Provisional
Probab=99.97 E-value=3.3e-29 Score=218.28 Aligned_cols=194 Identities=21% Similarity=0.266 Sum_probs=151.2
Q ss_pred ceEEEEEcCChhhhhhhhhhcCCCCh----hhhhHHHHHHHHHHHHHHHHHHHhCCCCceEe--cccccccccch-h--H
Q 028621 2 FQVAIVVGGGNIFRGASAAGNSGLDR----SSADYIGMLATVMNAIFLQATMESIGIPTRVQ--TAFRMSEVAEP-Y--I 72 (206)
Q Consensus 2 ~~~iiVhGGG~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~~ll~~~l~~~gi~a~~l--~~~~~~~v~~~-~--~ 72 (206)
+++|||||||..+ +. .++++.. ...+.+...++......+..+|+++|+++..+ +..++ ..+. | +
T Consensus 44 ~~vvlVsSGava~-G~---~~l~~~~~~~~~~~qalaavGq~~l~~~~~~~f~~~g~~~aqvLlT~~d~--~~~~~y~n~ 117 (368)
T PRK13402 44 HQVVLVSSGAVAA-GY---HKLGFIDRPSVPEKQAMAAAGQGLLMATWSKLFLSHGFPAAQLLLTHGDL--RDRERYINI 117 (368)
T ss_pred CEEEEEeCChhhc-Cc---cccCCCCCCCccHHHHHHHhhHHHHHHHHHHHHHHCCCeEEEEEEecchh--hhHHHHHHH
Confidence 6799999999554 32 2233211 12345556666666666777899999999754 43332 1111 2 2
Q ss_pred HHHHHHHhhCCCEEEEeCCC-----CCCCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccccccH--HH
Q 028621 73 RRRAVRHLEKGRVVIFAAGT-----GNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTY--QE 145 (206)
Q Consensus 73 ~~~l~~~l~~g~ipvi~g~~-----g~~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~~i~~--~e 145 (206)
.+.+..+|+.|.|||+++++ +..+++||++|+++|.+++||.|+++|||||||++||+.+|++++|+++++ +|
T Consensus 118 ~~~l~~LL~~g~IPIinenD~v~~~el~~GdnD~lAa~vA~~l~Ad~LiilTDVdGvy~~dP~~~p~a~~I~~I~~i~~e 197 (368)
T PRK13402 118 RNTINVLLERGILPIINENDAVTTDRLKVGDNDNLSAMVAALADADTLIILSDIDGLYDQNPRTNPDAKLIKQVTEINAE 197 (368)
T ss_pred HHHHHHHHHCCcEEEEeCCCcEeecccccCChHHHHHHHHHHhCCCEEEEEecCCeEEeCCCCCCCCCEEEEEeccCcHH
Confidence 57889999999999999742 356799999999999999999999999999999999999999999999986 45
Q ss_pred Hhc--------CCcCcc--hHHHHHHHHhCCCcEEEEcCCCCchHHHHhcCCCcceEEecCCCCcc
Q 028621 146 VTS--------KDLSVM--DMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGTWNSTV 201 (206)
Q Consensus 146 ~~~--------~g~~~~--k~~a~~~a~~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~~~~~~~~ 201 (206)
+.. .|+++| |++|+..|.++|++++|+|+++|+.|.+++.|+..||+|.+.....+
T Consensus 198 ~~~l~~~~~s~~gtGGM~~Kl~Aa~~a~~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~~~~~~~~ 263 (368)
T PRK13402 198 IYAMAGGAGSNVGTGGMRTKIQAAKIAMSHGIETFIGNGFTADIFNQLLKGQNPGTYFTPEEKPMQ 263 (368)
T ss_pred HHHHhcccccCcCcCCchHHHHHHHHHHHcCCcEEEEcCCCchHHHHHhcCCCCceEEecCCCCcc
Confidence 443 245566 88999999999999999999999999999999999999998655443
No 28
>PLN02512 acetylglutamate kinase
Probab=99.97 E-value=2.9e-29 Score=214.77 Aligned_cols=188 Identities=19% Similarity=0.229 Sum_probs=148.4
Q ss_pred ceEEEEEcCChhhhhhhhhhcCCCChhhh-----------hHHH-HHHHHHHHHHHHHHHHhCCCCceEecccccc----
Q 028621 2 FQVAIVVGGGNIFRGASAAGNSGLDRSSA-----------DYIG-MLATVMNAIFLQATMESIGIPTRVQTAFRMS---- 65 (206)
Q Consensus 2 ~~~iiVhGGG~~~~~~~~~~~~~l~~~~~-----------~~~~-~~~~~~~~~ll~~~l~~~gi~a~~l~~~~~~---- 65 (206)
.++|||||||+|++ .+.+++++++++. +.+. .++.++|..+++. |+++|++++++++.+..
T Consensus 80 ~~iVlVHGgG~~i~--~~~~~~gi~~~~~~G~rvT~~~~lei~~~~l~g~ln~~lv~~-L~~~Gv~av~l~g~d~~~i~a 156 (309)
T PLN02512 80 LRPVLVHGGGPEIN--SWLKKVGIEPQFKNGLRVTDAETMEVVEMVLVGKVNKSLVSL-INKAGGTAVGLSGKDGRLLRA 156 (309)
T ss_pred CCEEEEECCcHHHH--HHHHHcCCCCcCCCCCcCCCHHHHHHHHHHHhhHHHHHHHHH-HHHcCCCeEEeehhhCCEEEE
Confidence 47899999999954 4567777775432 2222 2456899999875 77899999999988642
Q ss_pred ----------cccchh--HHHHHHHHhhCCCEEEEeCC----CCC-CCCCcHHHHHHHHHhcCCcEEEEeeccCccccCC
Q 028621 66 ----------EVAEPY--IRRRAVRHLEKGRVVIFAAG----TGN-PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDN 128 (206)
Q Consensus 66 ----------~v~~~~--~~~~l~~~l~~g~ipvi~g~----~g~-~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~d 128 (206)
++++.. ..+.++.+|++|.|||++|+ .|. ..+++|++|+++|.+|+|++|+|+|||||||+++
T Consensus 157 ~~~~~~~~~~~~G~i~~v~~~~i~~lL~~g~IPVi~~~~~d~~g~~~~i~~D~~A~~lA~~L~Ad~li~lTdV~GV~~~~ 236 (309)
T PLN02512 157 RPSPNSADLGFVGEVTRVDPTVLRPLVDDGHIPVIATVAADEDGQAYNINADTAAGEIAAALGAEKLILLTDVAGVLEDK 236 (309)
T ss_pred EEcCcCccccccceeeecCHHHHHHHHhCCCEEEEeCceECCCCCEeccCHHHHHHHHHHHcCCCEEEEEeCCcceeCCC
Confidence 222211 25889999999999999996 232 3479999999999999999999999999999876
Q ss_pred CCCCCCCcccccccHHHHhcC-----CcCcc--hHHHHHHHHhCCCc-EEEEcCCCCchHH-HHhcCCCcceEEec
Q 028621 129 PRRNPNARLLDTLTYQEVTSK-----DLSVM--DMTAITLCQENNIP-VVVFNLNQPGNIA-KAIQGERVGTLIGG 195 (206)
Q Consensus 129 P~~~~~a~~i~~i~~~e~~~~-----g~~~~--k~~a~~~a~~~gi~-v~I~~g~~~~~l~-~~l~g~~~GT~i~~ 195 (206)
| +++++|++++++|+.++ ..++| |++++..+.+.|++ ++|++++.|+.+. ++|+++..||+|.+
T Consensus 237 ~---~~~~lI~~i~~~e~~~l~~~~~vtGGM~~Kl~aa~~a~~~Gv~~v~I~~g~~~~~ll~~l~~~~~~GT~I~~ 309 (309)
T PLN02512 237 D---DPGSLVKELDIKGVRKLIADGKIAGGMIPKVECCVRSLAQGVKTAHIIDGRVPHSLLLEILTDEGAGTMITG 309 (309)
T ss_pred C---CCcCCCcccCHHHHHHHHhCCCCCCcHHHHHHHHHHHHHcCCCEEEEecCCCCChHHHHHhcCCCCeeEEeC
Confidence 4 24789999999887654 23445 99999999999995 9999999999875 78999989999974
No 29
>PRK08841 aspartate kinase; Validated
Probab=99.97 E-value=3e-29 Score=220.73 Aligned_cols=185 Identities=25% Similarity=0.312 Sum_probs=152.1
Q ss_pred ceEEEEEcCCh-hhhhhh-hhhcCC-C-ChhhhhHHHHHHHHHHHHHHHHHHHhCCCCceEecccccccccch-----h-
Q 028621 2 FQVAIVVGGGN-IFRGAS-AAGNSG-L-DRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEP-----Y- 71 (206)
Q Consensus 2 ~~~iiVhGGG~-~~~~~~-~~~~~~-l-~~~~~~~~~~~~~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~~-----~- 71 (206)
+++++||+|++ ..+... .+++.. . ++..++.+.+.|+.+++.+++.+|++.|+++.++++++.+.+.+. .
T Consensus 34 ~~vvvVvSa~~~~td~ll~~~~~~~~~~~~~~~d~l~s~GE~~s~~lla~~L~~~Gi~a~~l~~~~~~i~t~~~~~~~~i 113 (392)
T PRK08841 34 NQVVVVVSAMAGETNRLLGLAKQVDSVPTARELDVLLSAGEQVSMALLAMTLNKLGYAARSLTGAQANIVTDNQHNDATI 113 (392)
T ss_pred CCEEEEECCCchHHHHHHHhhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEehhHcCEEecCCCCCcee
Confidence 46899998887 433322 222222 1 344568888899999999999999999999999999987544322 1
Q ss_pred --H-HHHHHHHhhCCCEEEEeCCCC-----C----CCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccc
Q 028621 72 --I-RRRAVRHLEKGRVVIFAAGTG-----N----PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLD 139 (206)
Q Consensus 72 --~-~~~l~~~l~~g~ipvi~g~~g-----~----~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~ 139 (206)
+ .+.+.++++.|.+||++||.| . .+++||++|+.+|.+|+|+++++||||||||++||+.+|++++++
T Consensus 114 ~~~~~~~i~~ll~~~~vpVv~Gf~g~~~~g~~ttlgrggsD~tAa~lA~~L~Ad~l~i~TDVdGVyt~DP~~v~~A~~i~ 193 (392)
T PRK08841 114 KHIDTSTITELLEQDQIVIVAGFQGRNENGDITTLGRGGSDTTAVALAGALNADECQIFTDVDGVYTCDPRVVKNARKLD 193 (392)
T ss_pred chhhHHHHHHHHhCCCEEEEeCCcccCCCCCEEEeCCCChHHHHHHHHHHcCCCEEEEEeCCCCCCcCCCCCCCCceEcc
Confidence 2 477888999999999999743 1 246899999999999999999999999999999999999999999
Q ss_pred cccHHHHhcC---CcCcchHHHHHHHHhCCCcEEEEcCCCCchHHHHhcCCCcceEEecC
Q 028621 140 TLTYQEVTSK---DLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGT 196 (206)
Q Consensus 140 ~i~~~e~~~~---g~~~~k~~a~~~a~~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~~~ 196 (206)
+++++|+.++ |.+++|++|+.+|.++++|++|.|++++. .||+|..+
T Consensus 194 ~is~~ea~ela~~Ga~vlhp~ai~~a~~~~Ipi~i~n~~~~~----------~GT~I~~~ 243 (392)
T PRK08841 194 VIDFPSMEAMARKGAKVLHLPSVQHAWKHSVPLRVLSSFEVG----------EGTLIKGE 243 (392)
T ss_pred cccHHHHHHHHhcCccccCHHHHHHHHHCCCeEEEEecCCCC----------CCeEEEec
Confidence 9999987764 78899999999999999999999998763 59999654
No 30
>cd04251 AAK_NAGK-UC AAK_NAGK-UC: N-Acetyl-L-glutamate kinase - uncharacterized (NAGK-UC). This domain is similar to Escherichia coli and Pseudomonas aeruginosa NAGKs which catalyze the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of microbial arginine biosynthesis. These uncharacterized domain sequences are found in some bacteria (Deinococci and Chloroflexi) and archea and belong to the Amino Acid Kinase Superfamily (AAK).
Probab=99.97 E-value=1.1e-29 Score=212.31 Aligned_cols=180 Identities=22% Similarity=0.279 Sum_probs=144.7
Q ss_pred ceEEEEEcCChhhhhhhhhhcCCCChhhh----------------hHHHHHHHHHHHHHHHHHHHhCCCCceEecccccc
Q 028621 2 FQVAIVVGGGNIFRGASAAGNSGLDRSSA----------------DYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMS 65 (206)
Q Consensus 2 ~~~iiVhGGG~~~~~~~~~~~~~l~~~~~----------------~~~~~~~~~~~~~ll~~~l~~~gi~a~~l~~~~~~ 65 (206)
.++|||||||+| .|.+++++++++++. +.+.+..+++|..+++ .|+++|++++++++.+..
T Consensus 25 ~~~VlVHGgg~~--i~~~~~~~gi~~~~~~~~~G~~~Rvt~~~~l~~~~~a~~~ln~~iv~-~L~~~Gi~a~~l~~~~~~ 101 (257)
T cd04251 25 ERLIVVHGGGNY--VNEYLKRLGVEPKFVTSPSGIRSRYTDKETLEVFVMVMGLINKKIVA-RLHSLGVKAVGLTGLDGR 101 (257)
T ss_pred CCEEEECCCHHH--HHHHHHHcCCCcEEEeCCCCCccccCCHHHHHHHHHHHHHHHHHHHH-HHHhCCCCceecccccCC
Confidence 479999999999 555677788765432 3444445899999988 588899999999998752
Q ss_pred cc------------------------cch--hHHHHHHHHhhCCCEEEEeCC----CCC-CCCCcHHHHHHHHHhcCCcE
Q 028621 66 EV------------------------AEP--YIRRRAVRHLEKGRVVIFAAG----TGN-PFFTTDTAAALRCAEINAEV 114 (206)
Q Consensus 66 ~v------------------------~~~--~~~~~l~~~l~~g~ipvi~g~----~g~-~~~~sD~~A~~lA~~l~A~~ 114 (206)
.+ ++. ...+.++.+|++|.|||++|+ .|. .++++|++|+.+|.+|+|++
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~d~~~~G~v~~v~~~~i~~ll~~g~vpVi~~~~~~~~G~~~~i~~D~~A~~lA~~L~A~~ 181 (257)
T cd04251 102 LLEAKRKEIVRVNERGRKMIIRGGYTGKVEKVNSDLIEALLDAGYLPVVSPVAYSEEGEPLNVDGDRAAAAIAAALKAER 181 (257)
T ss_pred EEEEEEeecccccccCcccccCCcceEEEEEEcHHHHHHHHhCCCeEEEeCcEECCCCcEEecCHHHHHHHHHHHcCCCE
Confidence 21 111 125889999999999999986 233 35899999999999999999
Q ss_pred EEEeeccCccccCCCCCCCCCcccccccHHHHhcC-----CcCcchHHHHHHHHhCCC-cEEEEcCCCCchHHHHhcCCC
Q 028621 115 VLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK-----DLSVMDMTAITLCQENNI-PVVVFNLNQPGNIAKAIQGER 188 (206)
Q Consensus 115 li~ltdV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~-----g~~~~k~~a~~~a~~~gi-~v~I~~g~~~~~l~~~l~g~~ 188 (206)
|+|+|||||||++ ++++++++++|+.++ |.+..|++++..+.++|+ +++|+++++|++|.+++.|+
T Consensus 182 li~~tdv~Gv~~~-------~~~i~~i~~~e~~~l~~~~~ggm~~Kl~aa~~a~~~gv~~v~i~~g~~~~~l~~~l~g~- 253 (257)
T cd04251 182 LILLTDVEGLYLD-------GRVIERITVSDAESLLEKAGGGMKRKLLAAAEAVEGGVREVVIGDARADSPISSALNGG- 253 (257)
T ss_pred EEEEeCChhheeC-------CcccCccCHHHHHHHHhhCCCchHHHHHHHHHHHHcCCCEEEEecCCCccHHHHHHcCC-
Confidence 9999999999973 579999999887654 334449999999999999 59999999999999999874
Q ss_pred cceEE
Q 028621 189 VGTLI 193 (206)
Q Consensus 189 ~GT~i 193 (206)
||.|
T Consensus 254 -gT~i 257 (257)
T cd04251 254 -GTVI 257 (257)
T ss_pred -CcCC
Confidence 9875
No 31
>cd04245 AAK_AKiii-YclM-BS AAK_AKiii-YclM-BS: Amino Acid Kinase Superfamily (AAK), AKiii-YclM-BS; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. In Bacillus subtilis (BS), YclM is reported to be a single polypeptide of 50 kD. The Bacillus subtilis 168 AKIII is induced by lysine and repressed by threonine, and it is synergistically inhibited by lysine and threonine.
Probab=99.97 E-value=3.6e-29 Score=211.65 Aligned_cols=160 Identities=23% Similarity=0.281 Sum_probs=142.2
Q ss_pred ChhhhhHHHHHHHHHHHHHHHHHHHhCCCCceEecccccccccc-hh--------HHHHHHHHhhCCCEEEEeCCCCC--
Q 028621 26 DRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAE-PY--------IRRRAVRHLEKGRVVIFAAGTGN-- 94 (206)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~-~~--------~~~~l~~~l~~g~ipvi~g~~g~-- 94 (206)
++...|.+.++||++|+.+++.+|++.|+++..+++++++.+.+ .+ ..+.+.+.++.+.|||++||.|.
T Consensus 108 ~~~~~d~i~s~GE~lSa~ll~~~L~~~Gi~a~~ld~~~~~i~t~~~~~~a~~~~~~~~~~~~~~~~~~v~Vv~Gf~g~~~ 187 (288)
T cd04245 108 PDYLLDALKARGEYLNAQLMAAYLNYQGIDARYVIPKDAGLVVTDEPGNAQILPESYQKIKKLRDSDEKLVIPGFYGYSK 187 (288)
T ss_pred CHHHHHHHHHHhHHHHHHHHHHHHHHCCCCeEEEcHHHCceeecCCccccccchhhHHHHHHHHhCCCEEEEeCccccCC
Confidence 45556888899999999999999999999999999999855432 21 24677788888999999998653
Q ss_pred -------CCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccccccHHHHhcC---CcCcchHHHHHHHHh
Q 028621 95 -------PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQE 164 (206)
Q Consensus 95 -------~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~---g~~~~k~~a~~~a~~ 164 (206)
++++||+.|+.+|.+|+|+.+.+||||||||++||+.+|+++.++++||+|+.++ |..++|+.|..++.+
T Consensus 188 ~G~~ttLgRggSD~tAal~A~~l~A~~v~i~tdVdGvytaDPr~v~~A~~i~~lsy~EA~ela~~GakVlhp~ai~~a~~ 267 (288)
T cd04245 188 NGDIKTFSRGGSDITGAILARGFQADLYENFTDVDGIYAANPRIVANPKPISEMTYREMRELSYAGFSVFHDEALIPAIE 267 (288)
T ss_pred CCCEEEcCCCchHHHHHHHHHHcCCCEEEEEeCCCceECCCCCCCCCCeEeCccCHHHHHHHHHCCCcccCHHHHHHHHH
Confidence 4689999999999999999999999999999999999999999999999999975 888999999999999
Q ss_pred CCCcEEEEcCCCCchHHHHhcCCCcceEEe
Q 028621 165 NNIPVVVFNLNQPGNIAKAIQGERVGTLIG 194 (206)
Q Consensus 165 ~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~ 194 (206)
+++|++|.|.++|+ ..||+|.
T Consensus 268 ~~Ipi~v~n~~~p~---------~~GT~I~ 288 (288)
T cd04245 268 AGIPINIKNTNHPE---------APGTLIV 288 (288)
T ss_pred CCCcEEEeeCCCCC---------CCCceeC
Confidence 99999999999997 5799984
No 32
>PRK05429 gamma-glutamyl kinase; Provisional
Probab=99.96 E-value=2.1e-28 Score=214.19 Aligned_cols=195 Identities=25% Similarity=0.356 Sum_probs=148.4
Q ss_pred ceEEEEEcCChhhhhhhhhhcCCCChhh-----hhHHHHHHHHHHHHHHHHHHHhCCCCceEe--cccccccccchhH--
Q 028621 2 FQVAIVVGGGNIFRGASAAGNSGLDRSS-----ADYIGMLATVMNAIFLQATMESIGIPTRVQ--TAFRMSEVAEPYI-- 72 (206)
Q Consensus 2 ~~~iiVhGGG~~~~~~~~~~~~~l~~~~-----~~~~~~~~~~~~~~ll~~~l~~~gi~a~~l--~~~~~~~v~~~~~-- 72 (206)
+++|||||| ++ ++-. .++++.... .+.+...++.....++..+|+++|+++..+ +..++.. ...++
T Consensus 47 ~~vViV~sG-ai--~~g~-~~l~l~~~~~~~~~~qa~aavGq~~L~~~~~~~l~~~gi~~~qil~t~~d~~~-~~~~ln~ 121 (372)
T PRK05429 47 HEVVLVSSG-AV--AAGR-ERLGLPERPKTLAEKQAAAAVGQSRLMQAYEELFARYGITVAQILLTRDDLED-RERYLNA 121 (372)
T ss_pred CeEEEEccc-Hh--hhhH-hhcCCCCCCCchHHHHHHHHHhHHHHHHHHHHHHHHCCCCEEEEEeehhHhhh-hhHhhhH
Confidence 579999976 55 3321 235554432 233444555666667777899999998763 4333311 01122
Q ss_pred HHHHHHHhhCCCEEEEeCCC-----CCCCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccccccH--HH
Q 028621 73 RRRAVRHLEKGRVVIFAAGT-----GNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTY--QE 145 (206)
Q Consensus 73 ~~~l~~~l~~g~ipvi~g~~-----g~~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~~i~~--~e 145 (206)
.+.++.++++|.|||+++++ ...+++||++|+++|.+++|++|+|+|||||||++||+.+|++++|+++++ +|
T Consensus 122 ~~~i~~Ll~~g~IPVi~~nd~v~~~~l~~gd~D~~Aa~lA~~l~Ad~LiilTDVdGVy~~dP~~~p~a~~I~~i~~~~~e 201 (372)
T PRK05429 122 RNTLRTLLELGVVPIINENDTVATDEIKFGDNDTLSALVANLVEADLLILLTDVDGLYTADPRKNPDAKLIPEVEEITDE 201 (372)
T ss_pred HHHHHHHHHCCCEEEEcCCCccceecccccChHHHHHHHHHHcCCCEEEEecCCCeeEcCCCCCCCCceEEEEeccCCHH
Confidence 36788899999999998642 235799999999999999999999999999999999999999999999987 44
Q ss_pred HhcC--------CcCcc--hHHHHHHHHhCCCcEEEEcCCCCchHHHHhcCCCcceEEecCCCCcc
Q 028621 146 VTSK--------DLSVM--DMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGTWNSTV 201 (206)
Q Consensus 146 ~~~~--------g~~~~--k~~a~~~a~~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~~~~~~~~ 201 (206)
+.++ ++++| |++|+..+.++|++++|+|+++|++|.++++|+..||+|.+.....+
T Consensus 202 ~~~~~~~~~~~~gtGGM~~Kl~aa~~a~~~Gi~v~I~~g~~~~~l~~~l~g~~~GT~i~~~~~~~~ 267 (372)
T PRK05429 202 LEAMAGGAGSGLGTGGMATKLEAARIATRAGIPVVIASGREPDVLLRLLAGEAVGTLFLPQEKPLS 267 (372)
T ss_pred HHHHhcCCCCCcCcCCcHHHHHHHHHHHHCCCeEEEEcCCCccHHHHHhcCCCCCEEEeeCCccch
Confidence 4432 34555 88999999999999999999999999999999999999998765543
No 33
>cd04244 AAK_AK-LysC-like AAK_AK-LysC-like: Amino Acid Kinase Superfamily (AAK), AK-LysC-like; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive AK isoenzyme found in higher plants. The lysine-sensitive AK isoenzyme is a monofunctional protein. It is involved in the overall regulation of the aspartate pathway and can be synergistically inhibited by S-adenosylmethionine. Also included in this CD is an uncharacterized LysC-like AK found in Euryarchaeota and some bacteria. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP.
Probab=99.96 E-value=7.7e-29 Score=211.01 Aligned_cols=161 Identities=28% Similarity=0.390 Sum_probs=139.5
Q ss_pred CChhhhhHHHHHHHHHHHHHHHHHHHhCCCCceEecccccccccch-------------hHHHHHHHHhhCCCEEEEeCC
Q 028621 25 LDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEP-------------YIRRRAVRHLEKGRVVIFAAG 91 (206)
Q Consensus 25 l~~~~~~~~~~~~~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~~-------------~~~~~l~~~l~~g~ipvi~g~ 91 (206)
+++...|.+.++||++|+.+++.+|+++|+++.++++++++.+... .+...+..+++.+.|||++||
T Consensus 113 ~~~~~~d~i~s~GE~lSa~lla~~L~~~Gi~a~~l~~~~~~i~t~~~~~~a~~~~~~~~~i~~~l~~ll~~~~vpVv~Gf 192 (298)
T cd04244 113 LTPRSRDYIVSFGERLSAPIFSAALRSLGIKARALDGGEAGIITDDNFGNARPLPATYERVRKRLLPMLEDGKIPVVTGF 192 (298)
T ss_pred CCchHhhHhccHhHHHHHHHHHHHHHhCCCCeEEEcHHHcceeecCcccccccchhHHHHHHHHHHHHhhcCCEEEEeCc
Confidence 3455668888999999999999999999999999999987543211 123455667788999999997
Q ss_pred CC-----C----CCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccccccHHHHhcC---CcCcchHHHH
Q 028621 92 TG-----N----PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAI 159 (206)
Q Consensus 92 ~g-----~----~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~---g~~~~k~~a~ 159 (206)
.| . .+++||++|+.+|.+|+|+++++||||||||++||+.+|+++++++++++|+.++ |.+++|++|+
T Consensus 193 ig~~~~g~~ttlgRggsD~~A~~~A~~l~a~~l~i~tdV~Gv~~~dP~~~~~a~~i~~lsy~Ea~el~~~Ga~vlhp~ai 272 (298)
T cd04244 193 IGATEDGAITTLGRGGSDYSATIIGAALDADEIWIWKDVDGVMTADPRIVPEARTIPRLSYAEAMELAYFGAKVLHPRTV 272 (298)
T ss_pred cccCCCCCEEEecCCChHHHHHHHHHHcCCCEEEEEECCCCCCCCCCCCCCCCeEcCccCHHHHHHHHhCCCcccCHHHH
Confidence 33 2 3579999999999999999999999999999999999999999999999998875 8889999999
Q ss_pred HHHHhCCCcEEEEcCCCCchHHHHhcCCCcceEEe
Q 028621 160 TLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIG 194 (206)
Q Consensus 160 ~~a~~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~ 194 (206)
.+|.+++||++|.|+++|+ ..||+|.
T Consensus 273 ~~a~~~~Ipi~i~n~~~p~---------~~GT~I~ 298 (298)
T cd04244 273 EPAMEKGIPVRVKNTFNPE---------APGTLIT 298 (298)
T ss_pred HHHHHcCCcEEEeeCCCCC---------CCCCEeC
Confidence 9999999999999999997 5799984
No 34
>PRK08210 aspartate kinase I; Reviewed
Probab=99.96 E-value=2.4e-28 Score=216.21 Aligned_cols=163 Identities=26% Similarity=0.340 Sum_probs=139.6
Q ss_pred CChhhhhHHHHHHHHHHHHHHHHHHHhCCCCceEecccccccccch---------hHHHHHHHHhhCCCEEEEeCCC---
Q 028621 25 LDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEP---------YIRRRAVRHLEKGRVVIFAAGT--- 92 (206)
Q Consensus 25 l~~~~~~~~~~~~~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~~---------~~~~~l~~~l~~g~ipvi~g~~--- 92 (206)
.++...+.+...++.++..+++++|+++|+++.++++.+.+.++.. ...+.++.+++.+.|||++|+.
T Consensus 66 ~~~~~~~~l~~~Ge~~s~~~~~~~l~~~Gi~a~~l~~~~~~~~t~~~~~~~~v~~~~~~~l~~~l~~~~vpVi~G~~~~~ 145 (403)
T PRK08210 66 ISKREQDLLMSCGEIISSVVFSNMLNENGIKAVALTGGQAGIITDDNFTNAKIIEVNPDRILEALEEGDVVVVAGFQGVT 145 (403)
T ss_pred CChHHHHHHHhHhHHHHHHHHHHHHHhCCCCeEEechHHccEEccCCCCceeeehhhHHHHHHHHhcCCEEEeeCeeecC
Confidence 4555678888899999999999999999999999999886444211 1247888899999999999972
Q ss_pred --CC----CCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccccccHHHHhcC---CcCcchHHHHHHHH
Q 028621 93 --GN----PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQ 163 (206)
Q Consensus 93 --g~----~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~---g~~~~k~~a~~~a~ 163 (206)
|. .++++|++|+.+|.+|+|++++|||||||||++||+.+|++++|++++++|+.++ |..++|++|+.+|.
T Consensus 146 ~~g~~~~l~rg~sD~~A~~lA~~l~A~~l~i~tDV~GV~~~dP~~~~~a~~i~~ls~~ea~~l~~~G~~v~~~~a~~~~~ 225 (403)
T PRK08210 146 ENGDITTLGRGGSDTTAAALGVALKAEYVDIYTDVDGIMTADPRIVEDARLLDVVSYNEVFQMAYQGAKVIHPRAVEIAM 225 (403)
T ss_pred CCCCEEEeCCCchHHHHHHHHHHcCCCEEEEEECCCCCCcCCCCcCCCCeECCccCHHHHHHHHHCCccccCHHHHHHHH
Confidence 22 2358999999999999999999999999999999999999999999999998875 78889999999999
Q ss_pred hCCCcEEEEcCCCCchHHHHhcCCCcceEEecCC
Q 028621 164 ENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGTW 197 (206)
Q Consensus 164 ~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~~~~ 197 (206)
++++|++|.|++++. .||+|.++.
T Consensus 226 ~~~i~i~i~~~~~~~----------~gT~I~~~~ 249 (403)
T PRK08210 226 QANIPLRIRSTYSDS----------PGTLITSLG 249 (403)
T ss_pred HCCCeEEEEecCCCc----------CCcEEEecC
Confidence 999999999998753 499998753
No 35
>PTZ00489 glutamate 5-kinase; Provisional
Probab=99.96 E-value=6.5e-28 Score=201.81 Aligned_cols=190 Identities=15% Similarity=0.227 Sum_probs=140.3
Q ss_pred ceEEEEEcCChhhhhhhhhhcCCCChhhhhHHHH---HHH-HHHHHHHHHHHHhCCCCceEecccccccccchh---HHH
Q 028621 2 FQVAIVVGGGNIFRGASAAGNSGLDRSSADYIGM---LAT-VMNAIFLQATMESIGIPTRVQTAFRMSEVAEPY---IRR 74 (206)
Q Consensus 2 ~~~iiVhGGG~~~~~~~~~~~~~l~~~~~~~~~~---~~~-~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~~~---~~~ 74 (206)
+++||||+|+ ++.++. ++++.......-.. .|. +++..... .|.++|+.+..+.......-..+. ..+
T Consensus 45 ~~vilVssGa-va~g~~---~~~~~~~~~~~~qa~aaiGq~~L~~~y~~-~f~~~~~~~aqiLlt~~d~~~~~~~~n~~~ 119 (264)
T PTZ00489 45 YEVILVTSGA-VAAGYT---KKEMDKSYVPNKQALASMGQPLLMHMYYT-ELQKHGILCAQMLLAAYDLDSRKRTINAHN 119 (264)
T ss_pred CeEEEEecCh-HhcChh---hcCCCccccHHHHHHHHhCHHHHHHHHHH-HHHhCCCeEEEeeeeccccccchhhHHHHH
Confidence 5799999666 866653 24544433222222 222 56665544 577899988753322111112221 357
Q ss_pred HHHHHhhCCCEEEEeCCCC-----CCCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcc---cccccHHHH
Q 028621 75 RAVRHLEKGRVVIFAAGTG-----NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARL---LDTLTYQEV 146 (206)
Q Consensus 75 ~l~~~l~~g~ipvi~g~~g-----~~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~---i~~i~~~e~ 146 (206)
.++.+|++|.|||+++++- ..+++||.+|+.+|..++||+|+|+|||||||++||+.+|++++ +++++.+++
T Consensus 120 ~l~~lL~~g~VPIinend~~~~~e~~~gdnD~lAa~lA~~l~Ad~LiilTDVdGVy~~dP~~~~~A~~~~~i~~i~~~~~ 199 (264)
T PTZ00489 120 TIEVLISHKVIPIINENDATALHELVFGDNDRLSALVAHHFKADLLVILSDIDGYYTENPRTSTDAKIRSVVHELSPDDL 199 (264)
T ss_pred HHHHHHHCCCEEEECCCCCcccceeEeCChHHHHHHHHHHhCCCEEEEeeccCeeEcCCCCCCCccceeeeeccCCHHHH
Confidence 8899999999999998631 23569999999999999999999999999999999999999987 778887765
Q ss_pred hc-------CCcCcc--hHHHHHHHHhCCCcEEEEcCCCCchHHHHhcCC--CcceEEecC
Q 028621 147 TS-------KDLSVM--DMTAITLCQENNIPVVVFNLNQPGNIAKAIQGE--RVGTLIGGT 196 (206)
Q Consensus 147 ~~-------~g~~~~--k~~a~~~a~~~gi~v~I~~g~~~~~l~~~l~g~--~~GT~i~~~ 196 (206)
.. .++++| |++||..+.++|++++|++|++|+.|.+++.|+ ..||+|.+.
T Consensus 200 ~~~~~~~~~~~tGGM~~Kl~aa~~a~~~Gi~v~I~~g~~~~~i~~~l~g~~~~~GT~~~~~ 260 (264)
T PTZ00489 200 VAEATPNNRFATGGIVTKLQAAQFLLERGGKMYLSSGFHLEKARDFLIGGSHEIGTLFYPR 260 (264)
T ss_pred HHhcCcCCCcccCChHHHHHHHHHHHHCCCCEEEEeCCCchHHHHHHcCCCCCCceEEeec
Confidence 31 134455 999999999999999999999999999999875 479999874
No 36
>PRK00942 acetylglutamate kinase; Provisional
Probab=99.96 E-value=1.8e-28 Score=207.58 Aligned_cols=186 Identities=20% Similarity=0.226 Sum_probs=146.4
Q ss_pred ceEEEEEcCChhhhhhhhhhcCCCChhh-----------hhHHH-HHHHHHHHHHHHHHHHhCCCCceEecccccccccc
Q 028621 2 FQVAIVVGGGNIFRGASAAGNSGLDRSS-----------ADYIG-MLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAE 69 (206)
Q Consensus 2 ~~~iiVhGGG~~~~~~~~~~~~~l~~~~-----------~~~~~-~~~~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~ 69 (206)
.++|||||||++++. ..+++++++.. ++... .++.++|..+++ +|+++|+++.++++.+.+++..
T Consensus 56 ~~vVlVhGgg~~~~~--~~~~~g~~~~~~~g~~~t~~~~l~~~~~a~~G~l~~~i~~-~L~~~Gv~a~~l~~~~~~~~ta 132 (283)
T PRK00942 56 INPVVVHGGGPQIDE--LLKKLGIESEFVNGLRVTDAETMEVVEMVLAGKVNKELVS-LINKHGGKAVGLSGKDGGLITA 132 (283)
T ss_pred CCEEEEeCChHHHHH--HHHHCCCCcEeeCCEecCCHHHHHHHHHHHcCchHHHHHH-HHHhCCCCccceeeccCCEEEE
Confidence 368999999999665 44556655432 12221 222489988885 5888999999999987544421
Q ss_pred --------------h--hHHHHHHHHhhCCCEEEEeCC----CCC-CCCCcHHHHHHHHHhcCCcEEEEeeccCccccCC
Q 028621 70 --------------P--YIRRRAVRHLEKGRVVIFAAG----TGN-PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDN 128 (206)
Q Consensus 70 --------------~--~~~~~l~~~l~~g~ipvi~g~----~g~-~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~d 128 (206)
. ...+.++.+|++|.|||+++. .|. .++++|++|+++|.+|+|++|+|+|||||||++
T Consensus 133 ~~~~~~~~~~~~g~i~~i~~~~l~~ll~~g~vpVv~~~~~~~~g~~~~l~~D~~A~~lA~~l~A~~li~~tdv~Gv~~~- 211 (283)
T PRK00942 133 KKLEEDEDLGFVGEVTPVNPALLEALLEAGYIPVISPIGVGEDGETYNINADTAAGAIAAALGAEKLILLTDVPGVLDD- 211 (283)
T ss_pred EECCCCCCCccccceEEECHHHHHHHHHCCCEEEEcCcEECCCCcEEEECHHHHHHHHHHHcCCCEEEEEECCcccccC-
Confidence 1 125789999999999999985 232 368999999999999999999999999999986
Q ss_pred CCCCCCCcccccccHHHHhcC-----CcCcc--hHHHHHHHHhCCC-cEEEEcCCCCch-HHHHhcCCCcceEEecC
Q 028621 129 PRRNPNARLLDTLTYQEVTSK-----DLSVM--DMTAITLCQENNI-PVVVFNLNQPGN-IAKAIQGERVGTLIGGT 196 (206)
Q Consensus 129 P~~~~~a~~i~~i~~~e~~~~-----g~~~~--k~~a~~~a~~~gi-~v~I~~g~~~~~-l~~~l~g~~~GT~i~~~ 196 (206)
++++|++++++|+.++ ..++| |+++|..+.++|+ +++|+|+++|++ |.++|+++++||+|.++
T Consensus 212 -----~~~~i~~i~~~e~~~~~~~~~~tggm~~Kl~~a~~~~~~gv~~v~I~~g~~~~~ll~~~~~~~~~GT~i~~~ 283 (283)
T PRK00942 212 -----KGQLISELTASEAEELIEDGVITGGMIPKVEAALDAARGGVRSVHIIDGRVPHALLLELFTDEGIGTMIVPD 283 (283)
T ss_pred -----CCcccccCCHHHHHHHHHcCCCCCchHHHHHHHHHHHHhCCCEEEEeCCCCCchHHHHHhcCCCcceEEecC
Confidence 3689999999887654 13444 9999999999998 599999999999 78999999999999874
No 37
>cd04250 AAK_NAGK-C AAK_NAGK-C: N-Acetyl-L-glutamate kinase - cyclic (NAGK-C) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of arginine biosynthesis found in some bacteria and photosynthetic organisms using the non-acetylated, cyclic route of ornithine biosynthesis. In this pathway, glutamate is first N-acetylated and then phosphorylated by NAGK to give phosphoryl NAG, which is converted to NAG-ornithine. There are two variants of this pathway. In one, typified by the pathway in Thermotoga maritima and Pseudomonas aeruginosa, the acetyl group is recycled by reversible transacetylation from acetylornithine to glutamate. The phosphorylation of NAG by NAGK is feedback inhibited by arginine. In photosynthetic organisms, NAGK is the target of the nitrogen-signaling protein PII. Hexameric formation of NAGK domains appears to be essential to both arginine inhibition and NAGK-PII complex formation. NAGK-C are members of the Amino A
Probab=99.96 E-value=1.5e-28 Score=207.74 Aligned_cols=186 Identities=20% Similarity=0.244 Sum_probs=145.7
Q ss_pred ceEEEEEcCChhhhhhhhhhcCCCChhh-----------hhHHHH-HHHHHHHHHHHHHHHhCCCCceEeccccccccc-
Q 028621 2 FQVAIVVGGGNIFRGASAAGNSGLDRSS-----------ADYIGM-LATVMNAIFLQATMESIGIPTRVQTAFRMSEVA- 68 (206)
Q Consensus 2 ~~~iiVhGGG~~~~~~~~~~~~~l~~~~-----------~~~~~~-~~~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~- 68 (206)
.++|||||||++++. .+++++++..+ ++.+.+ ++.++|..+++ .|+++|++++++++.+.+.+.
T Consensus 47 ~~~ViVhG~g~~~~~--~l~~~g~~~~~~~g~r~t~~~~~~~~~~~~~g~ln~~l~~-~L~~~Gv~a~~l~~~~~~~~~~ 123 (279)
T cd04250 47 INPVVVHGGGPEINE--MLKKLGIESEFVNGLRVTDEETMEIVEMVLVGKVNKEIVS-LINRAGGKAVGLSGKDGNLIKA 123 (279)
T ss_pred CCEEEEcCCcHHHHH--HHHHCCCCCEeECCeecCCHHHHHHHHHHHcCchHHHHHH-HHHHcCCCcceeecCCCCEEEE
Confidence 368999999999655 55667766432 122222 22489999855 588899999999998753331
Q ss_pred ------------------ch--hHHHHHHHHhhCCCEEEEeCC----CCC-CCCCcHHHHHHHHHhcCCcEEEEeeccCc
Q 028621 69 ------------------EP--YIRRRAVRHLEKGRVVIFAAG----TGN-PFFTTDTAAALRCAEINAEVVLKATNVDG 123 (206)
Q Consensus 69 ------------------~~--~~~~~l~~~l~~g~ipvi~g~----~g~-~~~~sD~~A~~lA~~l~A~~li~ltdV~G 123 (206)
+. ...+.++.+|++|.|||++|. .|. ..+++|.+|+++|.+|+|++|+|+|||||
T Consensus 124 ~~~~~~~~~~~~~~~~~g~i~~i~~~~i~~ll~~g~IPVi~~~~~~~~g~~~~~~~D~~A~~lA~~l~A~~li~ltdv~G 203 (279)
T cd04250 124 KKKDATVIEEIIDLGFVGEVTEVNPELLETLLEAGYIPVIAPVGVGEDGETYNINADTAAGAIAAALKAEKLILLTDVAG 203 (279)
T ss_pred EECcccccCCCcccCcccceEEEcHHHHHHHHHCCCeEEEcCCccCCCCcEEEeCHHHHHHHHHHHhCCCEEEEEECCcc
Confidence 11 125789999999999999985 122 24799999999999999999999999999
Q ss_pred cccCCCCCCCCCcccccccHHHHhcC-----CcCcc--hHHHHHHHHhCCCc-EEEEcCCCCchH-HHHhcCCCcceEE
Q 028621 124 VYDDNPRRNPNARLLDTLTYQEVTSK-----DLSVM--DMTAITLCQENNIP-VVVFNLNQPGNI-AKAIQGERVGTLI 193 (206)
Q Consensus 124 v~~~dP~~~~~a~~i~~i~~~e~~~~-----g~~~~--k~~a~~~a~~~gi~-v~I~~g~~~~~l-~~~l~g~~~GT~i 193 (206)
||+++|+ ++++|++++++|+.++ ..++| |+++|..+.++|++ |+|+|+++|+++ .++|++++.||+|
T Consensus 204 v~~~~p~---~~~~i~~i~~~e~~~l~~~~~~tGgm~~Kl~~a~~a~~~g~~~v~I~~g~~~~~ll~~~~~~~~~GT~i 279 (279)
T cd04250 204 VLDDPND---PGSLISEISLKEAEELIADGIISGGMIPKVEACIEALEGGVKAAHIIDGRVPHSLLLEIFTDEGIGTMI 279 (279)
T ss_pred cccCCCC---CccccccCCHHHHHHHHHcCCCCCchHHHHHHHHHHHHhCCCEEEEeCCCCCchHHHHHhcCCCCccCC
Confidence 9999884 3789999999887653 23444 99999999999986 999999999975 6899999999975
No 38
>cd04249 AAK_NAGK-NC AAK_NAGK-NC: N-Acetyl-L-glutamate kinase - noncyclic (NAGK-NC) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of microbial arginine biosynthesis using the acetylated, noncyclic route of ornithine biosynthesis. There are two variants of this pathway. In one, typified by the pathway in Escherichia coli, glutamate is acetylated by acetyl-CoA and acetylornithine is deacylated hydrolytically. In this pathway, feedback inhibition by arginine occurs at the initial acetylation of glutamate and not at the phosphorylation of NAG by NAGK. Homodimeric NAGK-NC are members of the Amino Acid Kinase Superfamily (AAK).
Probab=99.96 E-value=2e-28 Score=204.14 Aligned_cols=182 Identities=19% Similarity=0.210 Sum_probs=142.4
Q ss_pred ceEEEEEcCChhhhhhhhhhcCCCChhh-----------hhHHHHH-HHHHHHHHHHHHHHhCCCCceEecccccccc--
Q 028621 2 FQVAIVVGGGNIFRGASAAGNSGLDRSS-----------ADYIGML-ATVMNAIFLQATMESIGIPTRVQTAFRMSEV-- 67 (206)
Q Consensus 2 ~~~iiVhGGG~~~~~~~~~~~~~l~~~~-----------~~~~~~~-~~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v-- 67 (206)
.++|||||||+|.+. +.+++++++++ ++.+.+. ++++|..+++.++ ++|++++++++.+.+.+
T Consensus 32 ~~iVlVhGgg~~~~~--~~~~~g~~~~~~~g~rvt~~~~l~~~~~~~~~~~n~~lv~~l~-~~Gv~a~~l~~~~~~~~~~ 108 (252)
T cd04249 32 RQLVIVHGGGCVVDE--LLKKLNFPSEKKNGLRVTPKEQIPYITGALAGTANKQLMAQAI-KAGLKPVGLSLADGGMTAV 108 (252)
T ss_pred CCEEEECCCCHHHHH--HHHHcCCCCEEECCEecCCHHHHHHHHHHHcCcccHHHHHHHH-hCCCCceeeeccCCCEEEE
Confidence 468999999999554 55666665432 3343333 4699999999865 79999999999875433
Q ss_pred ----------cch--hHHHHHHHHhhCCCEEEEeCC----CC-CCCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCC
Q 028621 68 ----------AEP--YIRRRAVRHLEKGRVVIFAAG----TG-NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPR 130 (206)
Q Consensus 68 ----------~~~--~~~~~l~~~l~~g~ipvi~g~----~g-~~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~ 130 (206)
++. ...+.++.+|++|.|||+++. .| ..++++|++|+++|.+|+|+ ++|+|||||||++||
T Consensus 109 ~~~~~~~~~~G~v~~i~~~~l~~ll~~g~ipVi~~~g~~~~g~~~~~~~D~~A~~lA~~l~A~-~i~ltdv~Gv~~~~~- 186 (252)
T cd04249 109 TQLDPELGAVGKATANDPSLLNDLLKAGFLPIISSIGADDQGQLMNVNADQAATAIAQLLNAD-LVLLSDVSGVLDADK- 186 (252)
T ss_pred EEcCCCCCcccceEEEcHHHHHHHHHCCCEEEECCCEECCCCCEeeecHHHHHHHHHHHcCCC-EEEEeCCcccCCCCC-
Confidence 211 125789999999999999985 23 24689999999999999999 789999999998765
Q ss_pred CCCCCcccccccHHHHhcC---C--cCcc--hHHHHHHHHhCC-CcEEEEcCCCCchHHHHhcCCCcceEE
Q 028621 131 RNPNARLLDTLTYQEVTSK---D--LSVM--DMTAITLCQENN-IPVVVFNLNQPGNIAKAIQGERVGTLI 193 (206)
Q Consensus 131 ~~~~a~~i~~i~~~e~~~~---g--~~~~--k~~a~~~a~~~g-i~v~I~~g~~~~~l~~~l~g~~~GT~i 193 (206)
++|++++++|+.++ + .++| |++++..+.+.+ ++++|++++.|+.|.++|+|+++||+|
T Consensus 187 -----~~i~~i~~~e~~~~~~~g~~~gGm~~kl~~a~~~~~~~~~~v~I~~g~~~~~l~~~l~g~~~GT~I 252 (252)
T cd04249 187 -----QLISELNAKQAAELIEQGVITDGMIVKVNAALDAAQSLRRGIDIASWQYPEQLTALLAGEPVGTKI 252 (252)
T ss_pred -----cCccccCHHHHHHHHhcCCCcCCcHHHHHHHHHHHHhCCCeEEEEeCCCccHHHHHHcCCCCCcCC
Confidence 68999998877653 2 2344 888888876665 689999999999999999999999986
No 39
>cd04238 AAK_NAGK-like AAK_NAGK-like: N-Acetyl-L-glutamate kinase (NAGK)-like . Included in this CD are the Escherichia coli and Pseudomonas aeruginosa type NAGKs which catalyze the phosphorylation of N-acetyl-L-glutamate (NAG) by ATP in the second step of arginine biosynthesis found in bacteria and photosynthetic organisms using either the acetylated, noncyclic (NC), or non-acetylated, cyclic (C) route of ornithine biosynthesis. Also included in this CD is a distinct group of uncharacterized (UC) bacterial and archeal NAGKs. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK).
Probab=99.96 E-value=1.5e-28 Score=205.25 Aligned_cols=183 Identities=22% Similarity=0.241 Sum_probs=144.3
Q ss_pred ceEEEEEcCChhhhhhhhhhcCCCChh-----------hhhHHHHHH-HHHHHHHHHHHHHhCCCCceEecccccccccc
Q 028621 2 FQVAIVVGGGNIFRGASAAGNSGLDRS-----------SADYIGMLA-TVMNAIFLQATMESIGIPTRVQTAFRMSEVAE 69 (206)
Q Consensus 2 ~~~iiVhGGG~~~~~~~~~~~~~l~~~-----------~~~~~~~~~-~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~ 69 (206)
.++|||||||++ .+.+++++++..+ .++.+.+.. .++|..+++ .|+++|++++++++.+.+.+..
T Consensus 31 ~~~VlVhG~g~~--~~~~~~~~~~~~~~~~~~r~t~~~~l~~~~~a~~g~ln~~i~~-~L~~~Gv~a~~l~~~~~~~~~~ 107 (256)
T cd04238 31 INPVIVHGGGPE--INELLKRLGIESEFVNGLRVTDKETMEIVEMVLAGKVNKELVS-LLNRAGGKAVGLSGKDGGLIKA 107 (256)
T ss_pred CCEEEECCCcHH--HHHHHHHCCCCCEeECCeecCCHHHHHHHHHHHcCchHHHHHH-HHHhCCCCCCCcccccCCEEEE
Confidence 468999999999 5556677777532 223333333 589999855 5888999999999988544321
Q ss_pred -------------hh----HHHHHHHHhhCCCEEEEeCC----CC-CCCCCcHHHHHHHHHhcCCcEEEEeeccCccccC
Q 028621 70 -------------PY----IRRRAVRHLEKGRVVIFAAG----TG-NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDD 127 (206)
Q Consensus 70 -------------~~----~~~~l~~~l~~g~ipvi~g~----~g-~~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~ 127 (206)
.. ..+.++.+|++|.|||++|. .| ..++++|++|+++|.+|+|++|+|+|||||||++
T Consensus 108 ~~~~~~~~~~~~~g~i~~i~~~~l~~ll~~g~ipVv~~~~~~~~g~~~~~~~D~~A~~lA~~l~a~~li~ltdv~Gv~~~ 187 (256)
T cd04238 108 EKKEEKDIDLGFVGEVTEVNPELLETLLEAGYIPVIAPIAVDEDGETYNVNADTAAGAIAAALKAEKLILLTDVPGVLDD 187 (256)
T ss_pred EECCCCCCCcccccceEEECHHHHHHHHHCCCEEEECCcEECCCCcEEEECHHHHHHHHHHHcCCCEEEEEeCCccccCC
Confidence 01 25789999999999999985 22 2368999999999999999999999999999986
Q ss_pred CCCCCCCCcccccccHHHHhcC-----CcCcc--hHHHHHHHHhCCC-cEEEEcCCCCchHHHHhcC-CCcceEE
Q 028621 128 NPRRNPNARLLDTLTYQEVTSK-----DLSVM--DMTAITLCQENNI-PVVVFNLNQPGNIAKAIQG-ERVGTLI 193 (206)
Q Consensus 128 dP~~~~~a~~i~~i~~~e~~~~-----g~~~~--k~~a~~~a~~~gi-~v~I~~g~~~~~l~~~l~g-~~~GT~i 193 (206)
| ++++++++++|+.++ ..++| |+++|..+.+.|+ +++|+++++|++|.+++.+ +..||+|
T Consensus 188 -~-----~~~i~~i~~~e~~~~~~~~~~~ggm~~Kl~~a~~~~~~g~~~v~I~~g~~~~~l~~~l~~~~~~GT~i 256 (256)
T cd04238 188 -P-----GSLISELTPKEAEELIEDGVISGGMIPKVEAALEALEGGVRKVHIIDGRVPHSLLLELFTDEGIGTMI 256 (256)
T ss_pred -C-----CCccccCCHHHHHHHHHcCCCCCChHHHHHHHHHHHHhCCCEEEEeCCCCCcHHHHHHhcCCCCCCCC
Confidence 2 689999999887653 13444 9999999999887 5999999999999988877 6689975
No 40
>TIGR01027 proB glutamate 5-kinase. Bacterial ProB proteins hit the full length of this model, but the ProB-like domain of delta 1-pyrroline-5-carboxylate synthetase does not hit the C-terminal 100 residues of this model. The noise cutoff is set low enough to hit delta 1-pyrroline-5-carboxylate synthetase and other partial matches to this family.
Probab=99.96 E-value=8.7e-28 Score=209.62 Aligned_cols=194 Identities=27% Similarity=0.368 Sum_probs=145.2
Q ss_pred ceEEEEEcCChhhhhhhhhhcCCCChhh-----hhHHHHHHHHHHHHHHHHHHHhCCCCceEe--cccccccccchh--H
Q 028621 2 FQVAIVVGGGNIFRGASAAGNSGLDRSS-----ADYIGMLATVMNAIFLQATMESIGIPTRVQ--TAFRMSEVAEPY--I 72 (206)
Q Consensus 2 ~~~iiVhGGG~~~~~~~~~~~~~l~~~~-----~~~~~~~~~~~~~~ll~~~l~~~gi~a~~l--~~~~~~~v~~~~--~ 72 (206)
++++||||||..+ +. ++++++... .+.+...++.....+....|.++|+++..+ +..++.. ...+ .
T Consensus 39 ~~vvlV~sG~~~~-g~---~~lg~~~~~~~l~~~qa~aa~Gq~~l~~~~~~~l~~~Gi~~aqillt~~d~~~-~~~~lna 113 (363)
T TIGR01027 39 HEVVIVSSGAIAA-GF---EALGLPERPKTLAEKQALAAVGQVRLMQLYEQLFSQYGIKVAQILLTRADFSD-RERYLNA 113 (363)
T ss_pred CeEEEEeCcHHhc-Cc---cccCCCCCccchHHHHHHHHhChHHHHHHHHHHHHHcCCeEEEEEEeccchhh-HHHHHHH
Confidence 5799999998542 21 234554432 233444555555556677799999997542 2222110 0112 1
Q ss_pred HHHHHHHhhCCCEEEEeCC-----CCCCCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccccccHH--H
Q 028621 73 RRRAVRHLEKGRVVIFAAG-----TGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQ--E 145 (206)
Q Consensus 73 ~~~l~~~l~~g~ipvi~g~-----~g~~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~~i~~~--e 145 (206)
...++.+|++|.|||++.+ .+..++++|++|+++|.+++||+|+|+|||||||++||+.+|++++|+++++. +
T Consensus 114 ~~~i~~Ll~~g~iPVi~end~v~~~~l~~gd~D~lAa~lA~~l~Ad~liilTDVdGVy~~dP~~~p~A~~I~~i~~~~~~ 193 (363)
T TIGR01027 114 RNTLEALLELGVVPIINENDTVATEEIKFGDNDTLSALVAILVGADLLVLLTDVDGLYDADPRTNPDAKLIPVVEEITDL 193 (363)
T ss_pred HHHHHHHHhCCCEEEEeCCCceeeeecCcCChHHHHHHHHHHcCCCEEEEEeCCCcccCCCCCCCCCCeEEEEeccCcHH
Confidence 3678899999999999853 12457899999999999999999999999999999999999999999999853 2
Q ss_pred Hhc--------CCcCcc--hHHHHHHHHhCCCcEEEEcCCCCchHHHHhcCCCcceEEecCCCCc
Q 028621 146 VTS--------KDLSVM--DMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGTWNST 200 (206)
Q Consensus 146 ~~~--------~g~~~~--k~~a~~~a~~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~~~~~~~ 200 (206)
+.. .++++| |++|+..|.+.|++++|+|+++|++|.++++|+..||+|.++...-
T Consensus 194 ~~~i~~~~~~~~gtGGM~~Kl~Aa~~a~~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~~~~~~~ 258 (363)
T TIGR01027 194 LLGVAGDSGSSVGTGGMRTKLQAADLATRAGVPVIIASGSKPEKIADALEGAPVGTLFHAQARRL 258 (363)
T ss_pred HHHhhcCCCcCcCcCCchHHHHHHHHHHHCCCeEEEEeCCCccHHHHHhcCCCCcEEEeeCCCCc
Confidence 221 244556 8889999999999999999999999999999999999999865543
No 41
>PRK06635 aspartate kinase; Reviewed
Probab=99.96 E-value=5.1e-28 Score=214.08 Aligned_cols=185 Identities=26% Similarity=0.356 Sum_probs=150.1
Q ss_pred ceEEEEEcC-Chhhhhhhh-hhcC-C-CChhhhhHHHHHHHHHHHHHHHHHHHhCCCCceEecccccccccch-h-----
Q 028621 2 FQVAIVVGG-GNIFRGASA-AGNS-G-LDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEP-Y----- 71 (206)
Q Consensus 2 ~~~iiVhGG-G~~~~~~~~-~~~~-~-l~~~~~~~~~~~~~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~~-~----- 71 (206)
+++++|||| |...+.... ++.. . .++...+.+.+.++++|+.+++.+|+++|+++.++++.+++.+.+. +
T Consensus 34 ~~~vvV~sg~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Ge~~~~~~~~~~l~~~g~~a~~l~~~~~~~~~~~~~~~~~~ 113 (404)
T PRK06635 34 HQVVVVVSAMGGTTDELLDLAKEVSPLPDPRELDMLLSTGEQVSVALLAMALQSLGVKARSFTGWQAGIITDSAHGKARI 113 (404)
T ss_pred CCEEEEEeCCCCcHHHHHHHHHHhccCCCHHHHHHHhhhhHHHHHHHHHHHHHhCCCCeEEeChhhCCEEecCCCCceEe
Confidence 456776665 666555432 2211 1 2455667788889999999999999999999999999987544321 1
Q ss_pred ---HHHHHHHHhhCCCEEEEeCCCC-----C----CCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccc
Q 028621 72 ---IRRRAVRHLEKGRVVIFAAGTG-----N----PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLD 139 (206)
Q Consensus 72 ---~~~~l~~~l~~g~ipvi~g~~g-----~----~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~ 139 (206)
..+.++.+++.|.|||++|+.| . .+++||++|+++|.+|+|+++++||||||||++||+.+|++++++
T Consensus 114 ~~~~~~~l~~~l~~~~ipVi~g~~~~~~~g~~~~l~rg~sD~~A~~lA~~l~A~~l~~~tDV~Gv~~~dP~~~~~a~~i~ 193 (404)
T PRK06635 114 TDIDPSRIREALDEGDVVVVAGFQGVDEDGEITTLGRGGSDTTAVALAAALKADECEIYTDVDGVYTTDPRIVPKARKLD 193 (404)
T ss_pred eecCHHHHHHHHhCCCEEEecCccEeCCCCCEEecCCCChHHHHHHHHHHhCCCEEEEEEcCCCCCcCCCCCCCCceECC
Confidence 2478889999999999999732 2 246999999999999999999999999999999999999999999
Q ss_pred cccHHHHhcC---CcCcchHHHHHHHHhCCCcEEEEcCCCCchHHHHhcCCCcceEEecC
Q 028621 140 TLTYQEVTSK---DLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGT 196 (206)
Q Consensus 140 ~i~~~e~~~~---g~~~~k~~a~~~a~~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~~~ 196 (206)
+++++|+.++ |...+|++|+.++.++++|++|.|++++. .||+|..+
T Consensus 194 ~i~~~e~~~l~~~g~~~~~~~a~~~~~~~~i~~~i~~~~~~~----------~gT~i~~~ 243 (404)
T PRK06635 194 KISYEEMLELASLGAKVLHPRSVEYAKKYNVPLRVRSSFSDN----------PGTLITGE 243 (404)
T ss_pred ccCHHHHHHHHHcCCcccCHHHHHHHHHcCceEEEEcCCCCC----------CCCEEeeC
Confidence 9999998875 77788999999999999999999998763 59999765
No 42
>cd04259 AAK_AK-DapDC AAK_AK-DapDC: Amino Acid Kinase Superfamily (AAK), AK-DapDC; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the bifunctional enzyme AK - DAP decarboxylase (DapDC) found in some bacteria. Aspartokinase is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. DapDC, which is the lysA gene product, catalyzes the decarboxylation of DAP to lysine.
Probab=99.96 E-value=4.8e-28 Score=205.63 Aligned_cols=161 Identities=24% Similarity=0.291 Sum_probs=139.0
Q ss_pred CChhhhhHHHHHHHHHHHHHHHHHHHhCCCCceEecccccccccchh----------------HHHHHHHHhhC-CCEEE
Q 028621 25 LDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPY----------------IRRRAVRHLEK-GRVVI 87 (206)
Q Consensus 25 l~~~~~~~~~~~~~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~~~----------------~~~~l~~~l~~-g~ipv 87 (206)
.++...|.+.++||++|+.+++.+|++.|+++..++++++...+..+ ..+.+.+.++. +.+||
T Consensus 106 ~~~~~~d~i~s~GE~lSa~lla~~L~~~Gi~a~~ld~~~~i~~~~~~~~~~~~~~~a~v~~~~~~~~l~~~l~~~~~v~V 185 (295)
T cd04259 106 ASPRTRAEVLALGELMSTRLGAAYLEAQGLKVKWLDARELLTATPTLGGETMNYLSARCESEYADALLQKRLADGAQLII 185 (295)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEcHHHheeecccccccccccccceehhhhhHHHHHHHHhcCCceeE
Confidence 45566788999999999999999999999999999998875443211 13456666665 67999
Q ss_pred EeCCCC-----C----CCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccccccHHHHhcC---CcCcch
Q 028621 88 FAAGTG-----N----PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMD 155 (206)
Q Consensus 88 i~g~~g-----~----~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~---g~~~~k 155 (206)
++||.| . .+++||++|+.+|.+++|+++++||||||||++||+.+|++++|++++++|+.++ |.+++|
T Consensus 186 v~GFig~~~~G~~ttLGrggsD~tA~~lA~~l~A~~l~i~TdV~Gvyt~DP~~~~~a~~i~~ls~~ea~~l~~~Ga~v~h 265 (295)
T cd04259 186 TQGFIARNAHGETVLLGRGGSDTSAAYFAAKLQAARCEIWTDVPGLFTANPHEVPHARLLKRLDYDEAQEIATMGAKVLH 265 (295)
T ss_pred eCCceeeCCCCCEEEECCCChHHHHHHHHHHcCCCEEEEEECCCccccCCCCCCCCCeEeceeCHHHHHHHHHcCCcccC
Confidence 999843 1 3689999999999999999999999999999999999999999999999998865 788899
Q ss_pred HHHHHHHHhCCCcEEEEcCCCCchHHHHhcCCCcceEEe
Q 028621 156 MTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIG 194 (206)
Q Consensus 156 ~~a~~~a~~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~ 194 (206)
++|+.++.++++|++|.|+++|+ ..||+|.
T Consensus 266 ~~a~~~a~~~~ipi~i~~~~~p~---------~~GT~I~ 295 (295)
T cd04259 266 PRCIPPARRANIPMVVRSTERPE---------LSGTLIT 295 (295)
T ss_pred HHHHHHHHHCCCCEEEEeCCCCC---------CCCcEeC
Confidence 99999999999999999999997 5799984
No 43
>cd04247 AAK_AK-Hom3 AAK_AK-Hom3: Amino Acid Kinase Superfamily (AAK), AK-Hom3; this CD includes the N-terminal catalytic domain of the aspartokinase HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae and other related AK domains. Aspartokinase, the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single aspartokinase isoenzyme type, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies show that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size.
Probab=99.95 E-value=1.3e-27 Score=203.53 Aligned_cols=162 Identities=21% Similarity=0.295 Sum_probs=136.8
Q ss_pred ChhhhhHHHHHHHHHHHHHHHHHHHhCCCCceEecccccccccc-------hh---HHHHHHHHh-h-CCCEEEEeCCCC
Q 028621 26 DRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAE-------PY---IRRRAVRHL-E-KGRVVIFAAGTG 93 (206)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~-------~~---~~~~l~~~l-~-~g~ipvi~g~~g 93 (206)
++...|.+.++||++|+.+++.+|++.|+++..++++++...+. .+ +.+.+...+ + .+.|||++||.|
T Consensus 121 ~~~~~d~i~s~GE~lSa~l~a~~L~~~Gi~a~~ld~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~Vv~GFig 200 (306)
T cd04247 121 SPRTKDLVISTGEKLSCRFMAAVLRDRGVDAEYVDLSHIVDLDFSIEALDQTFYDELAQVLGEKITACENRVPVVTGFFG 200 (306)
T ss_pred chHHHHHHhhHHHHHHHHHHHHHHHhCCCCeEEEcHHHheecCCCccccccchhHHHHHHHHHHhhccCCceEEeeccEe
Confidence 44556888899999999999999999999999999988743322 11 122222223 2 468999999844
Q ss_pred -----C----CCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccccccHHHHhcC---CcCcchHHHHHH
Q 028621 94 -----N----PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITL 161 (206)
Q Consensus 94 -----~----~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~---g~~~~k~~a~~~ 161 (206)
. .+++||++|+.+|..|+|+++++||||||||++||+.+|++++|++++|+|+.++ |..++|+++..+
T Consensus 201 ~~~~G~~ttLGRgGsD~~A~~la~~l~a~~v~i~tdVdGvyt~DP~~~~~a~~i~~is~~ea~el~~~GakVlHp~ti~p 280 (306)
T cd04247 201 NVPGGLLSQIGRGYTDLCAALCAVGLNADELQIWKEVDGIFTADPRKVPTARLLPSITPEEAAELTYYGSEVIHPFTMEQ 280 (306)
T ss_pred cCCCCCeEEeCCCchHHHHHHHHHHcCCCEEEEeecCCeeECCCCCCCCCCeEecccCHHHHHHHHhCcCcccCHHHHHH
Confidence 1 3689999999999999999999999999999999999999999999999998875 788999999999
Q ss_pred HHhCCCcEEEEcCCCCchHHHHhcCCCcceEEecC
Q 028621 162 CQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGT 196 (206)
Q Consensus 162 a~~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~~~ 196 (206)
|.+.+||++|.|.++|+ ..||+|.++
T Consensus 281 a~~~~Ipi~i~nt~~P~---------~~GT~I~~~ 306 (306)
T cd04247 281 VIKARIPIRIKNVENPR---------GEGTVIYPD 306 (306)
T ss_pred HHHcCCcEEEecCCCCC---------CCCcEEcCC
Confidence 99999999999999987 579999864
No 44
>cd04257 AAK_AK-HSDH AAK_AK-HSDH: Amino Acid Kinase Superfamily (AAK), AK-HSDH; this CD includes the N-terminal catalytic domain of aspartokinase (AK) of the bifunctional enzyme AK - homoserine dehydrogenase (HSDH). These aspartokinases are found in bacteria (E. coli AKI-HSDHI, ThrA and E. coli AKII-HSDHII, MetL) and higher plants (Z. mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathway end products. Maize AK-HSDH is a Thr-sensitive 180-kD enzyme. Arabidopsis AK-HSDH is an alanine-act
Probab=99.95 E-value=1.1e-27 Score=203.51 Aligned_cols=161 Identities=27% Similarity=0.347 Sum_probs=139.2
Q ss_pred CChhhhhHHHHHHHHHHHHHHHHHHHhCCCCceEecccccccccch---------hHHHHHHHHhhC-CCEEEEeCCCC-
Q 028621 25 LDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEP---------YIRRRAVRHLEK-GRVVIFAAGTG- 93 (206)
Q Consensus 25 l~~~~~~~~~~~~~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~~---------~~~~~l~~~l~~-g~ipvi~g~~g- 93 (206)
+++...|.+.++||++|+.+++.+|++.|+++..++++++...+.. ...+.++.++.. +.|||++||.|
T Consensus 112 ~~~~~~d~ils~GE~lSa~lla~~L~~~Gi~a~~ld~~~~i~t~~~~~~a~~~~~~~~~~l~~~~~~~~~v~Vv~Gfig~ 191 (294)
T cd04257 112 LPDSIRAKVLSFGERLSARLLSALLNQQGLDAAWIDARELIVTDGGYLNAVVDIELSKERIKAWFSSNGKVIVVTGFIAS 191 (294)
T ss_pred CChhHhhhheeHHHHHHHHHHHHHHHhCCCCeEEEchHHeeEecCCCCceEechHhhHHHHHHHHhcCCCEEEecCcccC
Confidence 3455668888899999999999999999999999999986443322 124566776666 89999999843
Q ss_pred ----C----CCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccccccHHHHhcC---CcCcchHHHHHHH
Q 028621 94 ----N----PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLC 162 (206)
Q Consensus 94 ----~----~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~---g~~~~k~~a~~~a 162 (206)
. .+++||++|+.+|..|+|+++++||||||||++||+.+|+++++++++++|+.++ |..++++++..++
T Consensus 192 ~~~G~~ttlGRGGSD~~A~~lA~~l~a~~l~i~tdVdGvyt~DP~~~~~A~~i~~is~~ea~~l~~~Gakv~h~~~~~~a 271 (294)
T cd04257 192 NPQGETTTLGRNGSDYSAAILAALLDADQVEIWTDVDGVYSADPRKVKDARLLPSLSYQEAMELSYFGAKVLHPKTIQPV 271 (294)
T ss_pred CCCCCEEECCCCchHHHHHHHHHHhCCCEEEEEeCCCccCCCCCCCCCCCeEeceeCHHHHHHHHhCCCcccCHHHHHHH
Confidence 2 3688999999999999999999999999999999999999999999999998864 7888999999999
Q ss_pred HhCCCcEEEEcCCCCchHHHHhcCCCcceEEe
Q 028621 163 QENNIPVVVFNLNQPGNIAKAIQGERVGTLIG 194 (206)
Q Consensus 163 ~~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~ 194 (206)
.++++|++|.|+++|+ ..||+|.
T Consensus 272 ~~~~Ipi~i~~~~~p~---------~~GT~I~ 294 (294)
T cd04257 272 AKKNIPILIKNTFNPE---------APGTLIS 294 (294)
T ss_pred HHCCCCEEEeeCCCCC---------CCCCEeC
Confidence 9999999999999997 5799984
No 45
>PRK07431 aspartate kinase; Provisional
Probab=99.95 E-value=2.1e-27 Score=219.03 Aligned_cols=187 Identities=25% Similarity=0.309 Sum_probs=151.6
Q ss_pred ceEEEEEcC-Chhhhhhh-hhhcC--CCChhhhhHHHHHHHHHHHHHHHHHHHhCCCCceEecccccccccchh------
Q 028621 2 FQVAIVVGG-GNIFRGAS-AAGNS--GLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPY------ 71 (206)
Q Consensus 2 ~~~iiVhGG-G~~~~~~~-~~~~~--~l~~~~~~~~~~~~~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~~~------ 71 (206)
++++||||| |...+... ..++. ..+....+.+...++.+|+.+++.+|+++|++++++++.+++.+.+..
T Consensus 34 ~~vvvV~sa~g~~t~~l~~~~~~~t~~~~~~~~~~~ls~Ge~~s~~l~~~~l~~~gi~a~~l~~~~~~~~~~~~~~~~~i 113 (587)
T PRK07431 34 NDVVVVVSAMGKTTDELVKLAKEISSNPPRREMDMLLSTGEQVSIALLSMALHELGQPAISLTGAQVGIVTESEHGRARI 113 (587)
T ss_pred CCEEEEECCCCchhHHHHHHHHHhccCCCHHHHHHHHHHhHHHHHHHHHHHHHHCCCCeEEechhHcCeEecCCCCceee
Confidence 579999994 66665543 22211 122334567777889999999998999999999999999875543221
Q ss_pred ---HHHHHHHHhhCCCEEEEeCCCCC-----------CCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcc
Q 028621 72 ---IRRRAVRHLEKGRVVIFAAGTGN-----------PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARL 137 (206)
Q Consensus 72 ---~~~~l~~~l~~g~ipvi~g~~g~-----------~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~ 137 (206)
..+.++++++.|.|||++|+.|. .++++|++|+.+|.+|+|+++++||||||||++||+.+|++++
T Consensus 114 ~~~~~~~l~~~l~~g~vpVv~g~~g~~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~i~TDVdGVyt~DP~~~~~a~~ 193 (587)
T PRK07431 114 LEIKTDRIQRHLDAGKVVVVAGFQGISLSSNLEITTLGRGGSDTSAVALAAALGADACEIYTDVPGVLTTDPRLVPEAQL 193 (587)
T ss_pred eeccHHHHHHHHhCCCeEEecCCcCCCCCCCCCEeecCCCchHHHHHHHHHHcCCCEEEEEeCCCccCcCCCCCCCCCeE
Confidence 13688899999999999987432 2467999999999999999999999999999999999999999
Q ss_pred cccccHHHHhcC---CcCcchHHHHHHHHhCCCcEEEEcCCCCchHHHHhcCCCcceEEecCCC
Q 028621 138 LDTLTYQEVTSK---DLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGTWN 198 (206)
Q Consensus 138 i~~i~~~e~~~~---g~~~~k~~a~~~a~~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~~~~~ 198 (206)
|++++++|+.++ |.++||++|+.++.++|+|++|.|++. + ..||+|.++..
T Consensus 194 i~~i~~~e~~el~~~G~~v~~~~a~~~~~~~~i~i~i~~~~~-~---------~~GT~i~~~~~ 247 (587)
T PRK07431 194 MDEISCDEMLELASLGASVLHPRAVEIARNYGVPLVVRSSWS-D---------APGTLVTSPPP 247 (587)
T ss_pred CCCcCHHHHHHHHhCCCceEhHHHHHHHHHcCCcEEEecCCC-C---------CCCeEEEeCCc
Confidence 999999998864 788999999999999999999999873 2 36999987643
No 46
>cd04243 AAK_AK-HSDH-like AAK_AK-HSDH-like: Amino Acid Kinase Superfamily (AAK), AK-HSDH-like; this family includes the N-terminal catalytic domain of aspartokinase (AK) of the bifunctional enzyme AK- homoserine dehydrogenase (HSDH). These aspartokinases are found in such bacteria as E. coli (AKI-HSDHI, ThrA and AKII-HSDHII, MetL) and in higher plants (Z. mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathway end products. Maize AK-HSDH is a Thr-sensitive 180-kD enzyme. Arabidopsis AK-
Probab=99.95 E-value=1.2e-27 Score=203.12 Aligned_cols=161 Identities=28% Similarity=0.394 Sum_probs=139.4
Q ss_pred CChhhhhHHHHHHHHHHHHHHHHHHHhCCCCceEecccccccccchh---------HHHHHHHHhhC-CCEEEEeCCCC-
Q 028621 25 LDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPY---------IRRRAVRHLEK-GRVVIFAAGTG- 93 (206)
Q Consensus 25 l~~~~~~~~~~~~~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~~~---------~~~~l~~~l~~-g~ipvi~g~~g- 93 (206)
.++...|.+.++||++|+.+++.+|++.|+++..++++++......+ ..+.++.+++. +.|||++||.|
T Consensus 111 ~s~~~~d~ils~GE~lSa~lla~~L~~~Gi~a~~ld~~~~i~t~~~~~~~~~~~~~s~~~~~~~~~~~~~v~Vv~Gfig~ 190 (293)
T cd04243 111 LSDKTRAEVLSFGELLSSRLMSAYLQEQGLPAAWLDARELLLTDDGFLNAVVDLKLSKERLAQLLAEHGKVVVTQGFIAS 190 (293)
T ss_pred CCchhhhHheeHHHHHHHHHHHHHHHhCCCCcEEEcHHHeEEecCCCCcchhhhHHHHHHHHHHHhcCCCEEEecCcccc
Confidence 34556688889999999999999999999999999998764433211 13467777776 89999999843
Q ss_pred ----C----CCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccccccHHHHhcC---CcCcchHHHHHHH
Q 028621 94 ----N----PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLC 162 (206)
Q Consensus 94 ----~----~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~---g~~~~k~~a~~~a 162 (206)
. .+++||++|+.+|..++|+++++||||||||++||+.+|++++|++++++|+.++ |..++++++..++
T Consensus 191 ~~~G~~ttLGRggsD~~A~~~a~~l~a~~~~i~tdvdGiyt~dP~~~~~a~~i~~ls~~ea~~l~~~Gakvl~p~ai~~a 270 (293)
T cd04243 191 NEDGETTTLGRGGSDYSAALLAALLDAEEVEIWTDVDGVYTADPRKVPDARLLKELSYDEAMELAYFGAKVLHPRTIQPA 270 (293)
T ss_pred CCCCCEEEeCCCCcHHHHHHHHHHcCCCEEEEEeCCCccCCCCCCCCCCCeEeceeCHHHHHHHHhCCCcccCHHHHHHH
Confidence 2 3578999999999999999999999999999999999999999999999998874 7888999999999
Q ss_pred HhCCCcEEEEcCCCCchHHHHhcCCCcceEEe
Q 028621 163 QENNIPVVVFNLNQPGNIAKAIQGERVGTLIG 194 (206)
Q Consensus 163 ~~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~ 194 (206)
.++++|++|.|+++|+ ..||+|.
T Consensus 271 ~~~~i~i~i~~~~~p~---------~~GT~I~ 293 (293)
T cd04243 271 IRKNIPIFIKNTFNPE---------APGTLIS 293 (293)
T ss_pred HHCCCcEEEecCCCCC---------CCCCEeC
Confidence 9999999999999997 5799984
No 47
>cd04256 AAK_P5CS_ProBA AAK_P5CS_ProBA: Glutamate-5-kinase (G5K) domain of the bifunctional delta 1-pyrroline-5-carboxylate synthetase (P5CS), composed of an N-terminal G5K (ProB) and a C-terminal glutamyl 5- phosphate reductase (G5PR, ProA), the first and second enzyme catalyzing proline (and, in mammals, ornithine) biosynthesis. G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, and is subject to feedback allosteric inhibition by proline or ornithine. In plants, proline plays an important role as an osmoprotectant and, in mammals, ornithine biosynthesis is crucial for proper ammonia detoxification, since a G5K mutation has been shown to cause human hyperammonaemia.
Probab=99.95 E-value=4.5e-27 Score=198.87 Aligned_cols=187 Identities=20% Similarity=0.224 Sum_probs=137.3
Q ss_pred ceEE-EEEcCChhhhhhhhhhcCCC-----------------ChhhhhHH--HHHHHHHHHHHHHHHHHhCCCCceE--e
Q 028621 2 FQVA-IVVGGGNIFRGASAAGNSGL-----------------DRSSADYI--GMLATVMNAIFLQATMESIGIPTRV--Q 59 (206)
Q Consensus 2 ~~~i-iVhGGG~~~~~~~~~~~~~l-----------------~~~~~~~~--~~~~~~~~~~ll~~~l~~~gi~a~~--l 59 (206)
+++| |+||++++ ||..+++++. +....... ..++...-..+-..+|.++++++.. +
T Consensus 48 ~~vilVssGAv~~--G~~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~qa~aa~gq~~L~~~y~~~f~~~~~~~~q~ll 125 (284)
T cd04256 48 REVILVTSGAVAF--GKQRLRHEILLSSSMRQTLKSGQLKDMPQMELDGRACAAVGQSGLMALYEAMFTQYGITVAQVLV 125 (284)
T ss_pred CEEEEEeeCcHHh--ChHHhhhccccccchhhhcccccccCCcchhHHHHHHHHcccHHHHHHHHHHHHHcCCcHHHeee
Confidence 4667 99999999 9887765542 11111111 1122211122334457777877643 1
Q ss_pred cccccccccch--h--HHHHHHHHhhCCCEEEEeCCC-----------C---CCCCCcHHHHHHHHHhcCCcEEEEeecc
Q 028621 60 TAFRMSEVAEP--Y--IRRRAVRHLEKGRVVIFAAGT-----------G---NPFFTTDTAAALRCAEINAEVVLKATNV 121 (206)
Q Consensus 60 ~~~~~~~v~~~--~--~~~~l~~~l~~g~ipvi~g~~-----------g---~~~~~sD~~A~~lA~~l~A~~li~ltdV 121 (206)
+..++ .+. + ..+.++.+|+.|.|||+++++ + +.++|+|++|+++|..++|++|+|+|||
T Consensus 126 t~~d~---~~~~~~~~~~~~l~~lL~~g~iPVi~~nD~v~~~~~~~~~~~~~~~i~d~D~lAa~lA~~l~Ad~Li~lTDV 202 (284)
T cd04256 126 TKPDF---YDEQTRRNLNGTLEELLRLNIIPIINTNDAVSPPPEPDEDLQGVISIKDNDSLAARLAVELKADLLILLSDV 202 (284)
T ss_pred ecccc---ccHHHHHHHHHHHHHHHHCCCEEEEeCCCcccccccccccccccccccChHHHHHHHHHHcCCCEEEEEeCC
Confidence 11111 111 1 357889999999999999731 1 2458999999999999999999999999
Q ss_pred CccccCCCCCCCCCcccccccHHHHhcC--------CcCcc--hHHHHHHHHhCCCcEEEEcCCCCchHHHHhcCCCcce
Q 028621 122 DGVYDDNPRRNPNARLLDTLTYQEVTSK--------DLSVM--DMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGT 191 (206)
Q Consensus 122 ~Gv~~~dP~~~~~a~~i~~i~~~e~~~~--------g~~~~--k~~a~~~a~~~gi~v~I~~g~~~~~l~~~l~g~~~GT 191 (206)
||||++||+ .|++++|++++..+..++ ++++| |++|+..+.++|++++|++|++|++|.++++|+.+||
T Consensus 203 dGVy~~dP~-~~~a~~I~~i~~~~~~~~~~~~~s~~gtGGM~~Kl~Aa~~a~~~Gi~v~I~~G~~~~~i~~~l~G~~~GT 281 (284)
T cd04256 203 DGLYDGPPG-SDDAKLIHTFYPGDQQSITFGTKSRVGTGGMEAKVKAALWALQGGTSVVITNGMAGDVITKILEGKKVGT 281 (284)
T ss_pred CeeecCCCC-CCCCeEcccccHhHHHHhhcccccCcccCCcHHHHHHHHHHHHCCCeEEEEcCCCccHHHHHHcCCCCCE
Confidence 999999996 689999999988665422 35566 8999999999999999999999999999999999999
Q ss_pred EEe
Q 028621 192 LIG 194 (206)
Q Consensus 192 ~i~ 194 (206)
+|.
T Consensus 282 ~~~ 284 (284)
T cd04256 282 FFT 284 (284)
T ss_pred EeC
Confidence 983
No 48
>cd04258 AAK_AKiii-LysC-EC AAK_AKiii-LysC-EC: Amino Acid Kinase Superfamily (AAK), AKiii-LysC-EC: this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKIII. AKIII is a monofunctional class enzyme (LysC) found in some bacteria such as E. coli. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. In E. coli, LysC is reported to be a homodimer of 50 kD subunits.
Probab=99.95 E-value=3.3e-27 Score=200.03 Aligned_cols=161 Identities=24% Similarity=0.325 Sum_probs=137.1
Q ss_pred CChhhhhHHHHHHHHHHHHHHHHHHHhCCCCceEecccccccccch---------hHHHHHHHH---hhCCCEEEEeCCC
Q 028621 25 LDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEP---------YIRRRAVRH---LEKGRVVIFAAGT 92 (206)
Q Consensus 25 l~~~~~~~~~~~~~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~~---------~~~~~l~~~---l~~g~ipvi~g~~ 92 (206)
+++...|.+.++||++|+.+++.+|++.|+++..++++++...+.. ...+.+... +..+.|||++||.
T Consensus 108 ~~~~~~d~i~s~GE~lSa~lla~~L~~~Gi~a~~ld~~~~i~t~~~~~~a~~~~~~~~~~~~~~~~~~~~~~v~Vv~Gf~ 187 (292)
T cd04258 108 LSPASRDELLSFGERMSSLLFSEALREQGVPAEWFDVRTVLRTDSRFGRAAPDLNALAELAAKLLKPLLAGTVVVTQGFI 187 (292)
T ss_pred cChHhHhHhhhHHHHHHHHHHHHHHHhCCCCeEEEchHHeEEecCCCccccccHHHHHHHHHHHHHHhhcCCEEEECCcc
Confidence 3555678999999999999999999999999999999887444321 122222222 3457899999985
Q ss_pred CC---------CCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccccccHHHHhcC---CcCcchHHHHH
Q 028621 93 GN---------PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAIT 160 (206)
Q Consensus 93 g~---------~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~---g~~~~k~~a~~ 160 (206)
|. .+++||++|+.+|..|+|+.+++||||||||++||+.+|+++++++++|+|+.++ |..++++++..
T Consensus 188 g~~~~G~~ttLGrggsD~~a~~~a~~l~a~~~~i~tdv~Gv~~~dP~~~~~a~~i~~isy~Ea~ela~~Gakvlhp~a~~ 267 (292)
T cd04258 188 GSTEKGRTTTLGRGGSDYSAALLAEALHAEELQIWTDVAGIYTTDPRICPAARAIKEISFAEAAEMATFGAKVLHPATLL 267 (292)
T ss_pred ccCCCCCEEecCCCchHHHHHHHHHHcCCCEEEEEECCCccCCCCCCCCCCCeEeceeCHHHHHHHHHCCCcccCHHHHH
Confidence 42 3688999999999999999999999999999999999999999999999999875 88899999999
Q ss_pred HHHhCCCcEEEEcCCCCchHHHHhcCCCcceEEe
Q 028621 161 LCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIG 194 (206)
Q Consensus 161 ~a~~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~ 194 (206)
++.++++|++|.|.++|+ ..||+|.
T Consensus 268 ~~~~~~ipi~i~~~~~p~---------~~GT~I~ 292 (292)
T cd04258 268 PAIRKNIPVFVGSSKDPE---------AGGTLIT 292 (292)
T ss_pred HHHHcCCcEEEEeCCCCC---------CCCceeC
Confidence 999999999999999987 5799984
No 49
>PRK06291 aspartate kinase; Provisional
Probab=99.95 E-value=3.9e-27 Score=211.78 Aligned_cols=163 Identities=27% Similarity=0.345 Sum_probs=141.6
Q ss_pred CChhhhhHHHHHHHHHHHHHHHHHHHhCCCCceEecccccccccc-------------hhHHHHHHHHhhCCCEEEEeCC
Q 028621 25 LDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAE-------------PYIRRRAVRHLEKGRVVIFAAG 91 (206)
Q Consensus 25 l~~~~~~~~~~~~~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~-------------~~~~~~l~~~l~~g~ipvi~g~ 91 (206)
+++...|.+.++||++|+.+++.+|+++|+++.++++++++.+.. .++.+.++.+++.|.+||++||
T Consensus 117 ~~~~~~d~i~s~GE~~Sa~l~~~~L~~~Gi~a~~l~~~~~~i~t~~~~~~~~~~~~~~~~~~~~~~~ll~~~~vpVv~Gf 196 (465)
T PRK06291 117 LTPRSRDYILSFGERLSAPILSGALRDLGIKSVALTGGEAGIITDSNFGNARPLPKTYERVKERLEPLLKEGVIPVVTGF 196 (465)
T ss_pred CChHHHHHHHhhhHHHHHHHHHHHHHhCCCCeEEEchHHCcEEecCCCCceeechhhHHHHHHHHHHHhhcCcEEEEeCc
Confidence 345566888999999999999999999999999999998743321 1234567778889999999997
Q ss_pred C-----CC----CCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccccccHHHHhcC---CcCcchHHHH
Q 028621 92 T-----GN----PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAI 159 (206)
Q Consensus 92 ~-----g~----~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~---g~~~~k~~a~ 159 (206)
. |. .+++||++|+.+|.+|+|+++++||||||||++||+.+|+++++++++++|+.++ |.+++|++|+
T Consensus 197 ig~~~~g~~~tlgrggsD~~A~~~A~~l~a~~~~i~tdV~Gi~~~dP~~~~~a~~i~~l~~~ea~~l~~~G~~v~~~~a~ 276 (465)
T PRK06291 197 IGETEEGIITTLGRGGSDYSAAIIGAALDADEIWIWTDVDGVMTTDPRIVPEARVIPKISYIEAMELSYFGAKVLHPRTI 276 (465)
T ss_pred EEcCCCCCEEEecCCChHHHHHHHHHhcCCCEEEEEECCCCCCCCCCCCCCCCeEccccCHHHHHHHHhCCCcccCHHHH
Confidence 3 22 2579999999999999999999999999999999999999999999999998865 7888999999
Q ss_pred HHHHhCCCcEEEEcCCCCchHHHHhcCCCcceEEecC
Q 028621 160 TLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGT 196 (206)
Q Consensus 160 ~~a~~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~~~ 196 (206)
.+|.++++|++|.|+++|+ ..||+|..+
T Consensus 277 ~~~~~~~i~i~i~~~~~~~---------~~gt~i~~~ 304 (465)
T PRK06291 277 EPAMEKGIPVRVKNTFNPE---------FPGTLITSD 304 (465)
T ss_pred HHHHHcCCcEEEecCCCCC---------CCceEEEec
Confidence 9999999999999999986 579999864
No 50
>TIGR00657 asp_kinases aspartate kinase. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.
Probab=99.95 E-value=8.5e-27 Score=208.45 Aligned_cols=159 Identities=26% Similarity=0.354 Sum_probs=137.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhCCCCceEecccccccccch----------hHHHHHHHHhhCCCEEEEeCCC-----CC
Q 028621 30 ADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEP----------YIRRRAVRHLEKGRVVIFAAGT-----GN 94 (206)
Q Consensus 30 ~~~~~~~~~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~~----------~~~~~l~~~l~~g~ipvi~g~~-----g~ 94 (206)
.|.+.++||++|+.+++.+|+++|++++.+++.+.+.+... ...+.+..+++.|.|||++||. |.
T Consensus 105 ~d~ils~GE~~s~~l~~~~l~~~Gi~a~~l~~~~~~l~t~~~~~~~~~~~~~~~~~l~~~l~~~~vpVv~G~~g~~~~g~ 184 (441)
T TIGR00657 105 MDRILSFGERLSAALLSAALEELGVKAVSLLGGEAGILTDSNFGRARVIIEILTERLEPLLEEGIIPVVAGFQGATEKGE 184 (441)
T ss_pred HhheecHHHHHHHHHHHHHHHhCCCCCEEEEcCcceEEecCCCCceeecHhhhHHHHHHHHhcCCEEEEeCcEeeCCCCC
Confidence 35666789999999999999999999999999986544311 1357888899999999999973 22
Q ss_pred ----CCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccccccHHHHhcC---CcCcchHHHHHHHHhCCC
Q 028621 95 ----PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQENNI 167 (206)
Q Consensus 95 ----~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~---g~~~~k~~a~~~a~~~gi 167 (206)
.+++||++|+.+|.+|+|+++++||||||||++||+.+|+++++++++++|+.++ |.+++|++|+.++.++++
T Consensus 185 ~~~lgrggsD~~A~~lA~~l~a~~l~~~tDV~Gv~~~DP~~~~~a~~i~~is~~ea~el~~~G~~v~~~~a~~~~~~~~i 264 (441)
T TIGR00657 185 TTTLGRGGSDYTAALLAAALKADECEIYTDVDGIYTTDPRIVPDARRIDEISYEEMLELASFGAKVLHPRTLEPAMRAKI 264 (441)
T ss_pred EeecCCCchHHHHHHHHHHcCCCEEEEEECCCCCCcCCCCCCCCCeECCccCHHHHHHHHhcCCcccCHHHHHHHHHcCC
Confidence 2457999999999999999999999999999999999999999999999998865 778899999999999999
Q ss_pred cEEEEcCCCCchHHHHhcCCCcceEEecCC
Q 028621 168 PVVVFNLNQPGNIAKAIQGERVGTLIGGTW 197 (206)
Q Consensus 168 ~v~I~~g~~~~~l~~~l~g~~~GT~i~~~~ 197 (206)
|++|.|+++|+ ..||+|.++.
T Consensus 265 ~i~i~~~~~~~---------~~GT~I~~~~ 285 (441)
T TIGR00657 265 PIVVKSTFNPE---------APGTLIVAST 285 (441)
T ss_pred eEEEecCCCCC---------CCceEEEeCC
Confidence 99999999886 4699998753
No 51
>PRK09034 aspartate kinase; Reviewed
Probab=99.95 E-value=7.5e-27 Score=209.27 Aligned_cols=163 Identities=22% Similarity=0.280 Sum_probs=141.9
Q ss_pred ChhhhhHHHHHHHHHHHHHHHHHHHhCCCCceEecccccccccch-h--------HHHHHHHHhhCCCEEEEeCCCC---
Q 028621 26 DRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEP-Y--------IRRRAVRHLEKGRVVIFAAGTG--- 93 (206)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~~-~--------~~~~l~~~l~~g~ipvi~g~~g--- 93 (206)
++...|.+.++||++|+.+++.+|++.|+++..+++++++.+++. + ..+.+..++..+.+||++||.|
T Consensus 108 ~~~~~d~l~s~GE~~S~~l~a~~L~~~g~~a~~~~~~~~~~~t~~~~~~a~i~~~~~~~~~~~~~~~~v~Vv~GFig~~~ 187 (454)
T PRK09034 108 PDRLLDAFKARGEDLNAKLIAAYLNYEGIPARYVDPKEAGIIVTDEPGNAQVLPESYDNLKKLRDRDEKLVIPGFFGVTK 187 (454)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEchHHceEEecCCcCceeEcHhhHHHHHHHHhcCCEEEecCccccCC
Confidence 455668899999999999999999999999999999998555321 1 1355556666778999999844
Q ss_pred --C----CCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccccccHHHHhcC---CcCcchHHHHHHHHh
Q 028621 94 --N----PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQE 164 (206)
Q Consensus 94 --~----~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~---g~~~~k~~a~~~a~~ 164 (206)
. .+++||+.|+.+|.+|+|+.+.+||||||||++||+.+|+++.++++||+|+.++ |..++|++|..+|.+
T Consensus 188 ~g~~ttlgRggSD~tA~~la~~l~A~~~~i~tdV~Gi~taDPr~v~~A~~l~~lsy~Ea~ela~~Gakvlhp~ai~~a~~ 267 (454)
T PRK09034 188 DGQIVTFSRGGSDITGAILARGVKADLYENFTDVDGIYAANPRIVKNPKSIKEITYREMRELSYAGFSVFHDEALIPAYR 267 (454)
T ss_pred CCCEEecCCCcHHHHHHHHHHHcCCCEEEEEecCCccCcCCCCCCCCCeECCccCHHHHHHHHhCCcccCCHHHHHHHHH
Confidence 1 3689999999999999999999999999999999999999999999999999874 889999999999999
Q ss_pred CCCcEEEEcCCCCchHHHHhcCCCcceEEecCC
Q 028621 165 NNIPVVVFNLNQPGNIAKAIQGERVGTLIGGTW 197 (206)
Q Consensus 165 ~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~~~~ 197 (206)
+++|++|.|.++|+ ..||+|..+.
T Consensus 268 ~~Ipi~v~~~~~p~---------~~GT~I~~~~ 291 (454)
T PRK09034 268 GGIPINIKNTNNPE---------DPGTLIVPDR 291 (454)
T ss_pred cCCCEEEEcCCCCC---------CCccEEEecc
Confidence 99999999999986 5799998653
No 52
>PLN02551 aspartokinase
Probab=99.94 E-value=1.6e-26 Score=209.37 Aligned_cols=163 Identities=25% Similarity=0.329 Sum_probs=140.0
Q ss_pred CChhhhhHHHHHHHHHHHHHHHHHHHhCCCCceEecccccccccch-h----H----HHHHHHHh-----hCCCEEEEeC
Q 028621 25 LDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEP-Y----I----RRRAVRHL-----EKGRVVIFAA 90 (206)
Q Consensus 25 l~~~~~~~~~~~~~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~~-~----~----~~~l~~~l-----~~g~ipvi~g 90 (206)
++++..|.+.++||++|+.+++.+|++.|+++..+++++++.+++. + + .+.+++.+ +.+.|||++|
T Consensus 160 ~~~~~~d~ils~GE~lSa~lla~~L~~~Gi~a~~lda~~~gi~t~~~~~~a~i~~~~~~~l~~~l~~~~~~~~~v~Vv~G 239 (521)
T PLN02551 160 LTPRTRDYLVSFGERMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWIDDPAVPVVTG 239 (521)
T ss_pred cchHHHHHHHhHHHHHHHHHHHHHHHHCCCCcEEechHHcceEecCCCCccchhhhhHHHHHHHHHhhhccCCeEEEEcC
Confidence 4556678999999999999999999999999999999998655432 1 1 23333333 3568999999
Q ss_pred CCCC----------CCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccccccHHHHhcC---CcCcchHH
Q 028621 91 GTGN----------PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMT 157 (206)
Q Consensus 91 ~~g~----------~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~---g~~~~k~~ 157 (206)
|.|. .+++||+.|+.+|.+|+|+.+.+||||||||++||+.+|+++.++++||+|+.++ |..++|++
T Consensus 240 Fig~~~~~G~~ttLGRGGSD~sA~~la~~L~A~~v~I~tDV~Gi~taDPr~v~~A~~l~~lsy~Ea~elA~~GakVlhp~ 319 (521)
T PLN02551 240 FLGKGWKTGAITTLGRGGSDLTATTIGKALGLREIQVWKDVDGVLTCDPRIYPNAVPVPYLTFDEAAELAYFGAQVLHPQ 319 (521)
T ss_pred ccccCCCCCcEEecCCChHHHHHHHHHHHcCCCEEEEEeCCCceeCCCCCCCCCceEecccCHHHHHHHHhCCCcccCHH
Confidence 8542 2588999999999999999999999999999999999999999999999999875 88999999
Q ss_pred HHHHHHhCCCcEEEEcCCCCchHHHHhcCCCcceEEecC
Q 028621 158 AITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGT 196 (206)
Q Consensus 158 a~~~a~~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~~~ 196 (206)
+..+|.+.+||++|.|.++|+ ..||+|...
T Consensus 320 ai~pa~~~~Ipi~vknt~~p~---------~~GT~I~~~ 349 (521)
T PLN02551 320 SMRPAREGDIPVRVKNSYNPT---------APGTLITKT 349 (521)
T ss_pred HHHHHHHCCceEEEEecCCCC---------CCCcEEecc
Confidence 999999999999999999886 579999764
No 53
>PRK08373 aspartate kinase; Validated
Probab=99.94 E-value=3e-26 Score=197.68 Aligned_cols=159 Identities=25% Similarity=0.393 Sum_probs=137.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhCCCCceEecccccccccchh------------HHHHHHHHhhCCCEEEEeCCCCC
Q 028621 27 RSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPY------------IRRRAVRHLEKGRVVIFAAGTGN 94 (206)
Q Consensus 27 ~~~~~~~~~~~~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~~~------------~~~~l~~~l~~g~ipvi~g~~g~ 94 (206)
+...|.+.+.||++|+.+++.+|+++|+++..++++++...+..+ ..+.+..+++.|.|||++||.++
T Consensus 99 ~~~~D~ils~GE~lSa~lla~~L~~~Gi~a~~l~~~~~i~t~~~~~~a~i~~~~s~~~~~~l~~~l~~g~VpVv~Gf~g~ 178 (341)
T PRK08373 99 EALRDYILSFGERLSAVLFAEALENEGIKGKVVDPWEILEAKGSFGNAFIDIKKSKRNVKILYELLERGRVPVVPGFIGN 178 (341)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHCCCceEEEeHHHheeecCCccceeechhhhhhhHHHHHHHHhCCcEEEEeCCccC
Confidence 445789999999999999999999999999999998763332211 13677888999999999998542
Q ss_pred --------CCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccccccHHHHhcC---CcCcchHHHHHHHH
Q 028621 95 --------PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQ 163 (206)
Q Consensus 95 --------~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~---g~~~~k~~a~~~a~ 163 (206)
.+++||++|+.+|.+|+|+++++||||||||++||+.+|+++++++++++|+.++ |..+++++|..++.
T Consensus 179 ~~G~~ttLGRGGSD~tA~~lA~~L~A~~v~i~TDVdGVytaDP~~v~~A~~i~~isy~Ea~ela~~Gakvlhp~ai~~a~ 258 (341)
T PRK08373 179 LNGFRATLGRGGSDYSAVALGVLLNAKAVLIMSDVEGIYTADPKLVPSARLIPYLSYDEALIAAKLGMKALHWKAIEPVK 258 (341)
T ss_pred CCCeEEEcCCCchHHHHHHHHHHcCCCEEEEEECCCccCCCCCCCCCCCeEcccCCHHHHHHHHHCcChhhhHHHHHHHH
Confidence 2468999999999999999999999999999999999999999999999998875 77788999999999
Q ss_pred hCCCcEEEEcCCCCchHHHHhcCCCcceEEecC
Q 028621 164 ENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGT 196 (206)
Q Consensus 164 ~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~~~ 196 (206)
+ ++|++|.|.++|+ .||+|...
T Consensus 259 ~-~Ipi~v~~t~~~~----------~GT~I~~~ 280 (341)
T PRK08373 259 G-KIPIIFGRTRDWR----------MGTLVSNE 280 (341)
T ss_pred c-CCcEEEecCCCCC----------CCcEEecC
Confidence 9 9999999988773 59999764
No 54
>PRK09084 aspartate kinase III; Validated
Probab=99.94 E-value=2.6e-26 Score=205.48 Aligned_cols=163 Identities=21% Similarity=0.289 Sum_probs=140.2
Q ss_pred CChhhhhHHHHHHHHHHHHHHHHHHHhCCCCceEecccccccccch---------hH----HHHHHHHhhCCCEEEEeCC
Q 028621 25 LDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEP---------YI----RRRAVRHLEKGRVVIFAAG 91 (206)
Q Consensus 25 l~~~~~~~~~~~~~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~~---------~~----~~~l~~~l~~g~ipvi~g~ 91 (206)
.++...|.+.+.||++|+.+++.+|++.|+++..++++++...+.. .. .+.+..+++.+ +||++||
T Consensus 104 ~~~~~~d~i~s~GE~lSa~l~~~~L~~~Gi~a~~l~~~~~i~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~Vv~Gf 182 (448)
T PRK09084 104 TSPALTDELVSHGELMSTLLFVELLRERGVQAEWFDVRKVMRTDDRFGRAEPDVAALAELAQEQLLPLLAEG-VVVTQGF 182 (448)
T ss_pred CChhhhhhhhhHHHHHHHHHHHHHHHhCCCCcEEEchHHeEEecCCCCcccccHHHHHHHHHHHHHHhhcCC-cEEecCe
Confidence 3556678999999999999999999999999999999887444221 11 24455566778 9999998
Q ss_pred CC-----C----CCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccccccHHHHhcC---CcCcchHHHH
Q 028621 92 TG-----N----PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAI 159 (206)
Q Consensus 92 ~g-----~----~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~---g~~~~k~~a~ 159 (206)
.| . .+++||++|+.+|..|+|+++++||||||||++||+.+|+++++++++|+|+.++ |..++++.+.
T Consensus 183 ~g~~~~G~~ttLgRggSD~~a~~~a~~l~a~~~~i~tdv~Gi~t~dP~~~~~a~~i~~is~~ea~ela~~Ga~vlh~~~~ 262 (448)
T PRK09084 183 IGSDEKGRTTTLGRGGSDYSAALLAEALNASRVEIWTDVPGIYTTDPRIVPAAKRIDEISFEEAAEMATFGAKVLHPATL 262 (448)
T ss_pred eecCCCCCEeecCCCchHHHHHHHHHHcCCCEEEEEECCCccccCCCCCCCCCeEcccCCHHHHHHHHhCCCcccCHHHH
Confidence 43 1 3689999999999999999999999999999999999999999999999999875 7888999999
Q ss_pred HHHHhCCCcEEEEcCCCCchHHHHhcCCCcceEEecCC
Q 028621 160 TLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGTW 197 (206)
Q Consensus 160 ~~a~~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~~~~ 197 (206)
.++.++++|++|.|+++|+ ..||+|..+.
T Consensus 263 ~~~~~~~i~i~i~~~~~~~---------~~GT~I~~~~ 291 (448)
T PRK09084 263 LPAVRSNIPVFVGSSKDPE---------AGGTWICNDT 291 (448)
T ss_pred HHHHHcCCcEEEEeCCCCC---------CCceEEecCC
Confidence 9999999999999999996 5799998653
No 55
>TIGR02078 AspKin_pair Pyrococcus aspartate kinase subunit, putative. This family consists of proteins restricted to and found as paralogous pairs (typically close together) in species of Pyrococcus, a hyperthermophilic archaeal genus. Members are always found close to other genes of threonine biosynthesis and appear to represent the Pyrococcal form of aspartate kinase. Alignment to aspartokinase III from E. coli shows that 300 N-terminal and 20 C-terminal amino acids are homologous, but the form in Pyrococcus lacks ~ 100 amino acids in between.
Probab=99.94 E-value=8.7e-26 Score=193.81 Aligned_cols=156 Identities=24% Similarity=0.361 Sum_probs=131.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhCCCCceEecccccccccchh------------HHHHHHHHhhCCCEEEEeCCCCC
Q 028621 27 RSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPY------------IRRRAVRHLEKGRVVIFAAGTGN 94 (206)
Q Consensus 27 ~~~~~~~~~~~~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~~~------------~~~~l~~~l~~g~ipvi~g~~g~ 94 (206)
+...|.+.++++++|+.+++. |+++..++++++...+..+ ..+.+..+++.|.|||++||.+.
T Consensus 94 ~~~~d~I~s~GE~lSa~Lla~-----gi~a~~vd~~~~i~t~~~~~~a~~~~~~~~~~~~~l~~~l~~g~IpVv~Gf~~~ 168 (327)
T TIGR02078 94 EALRDYILSLGERLSAVIFAE-----GINGKVVDPWDIFFAKGDFGNAFIDIKKSKRNAKILYEVLESGKIPVIPGFYGN 168 (327)
T ss_pred hHHHHHHHHHHHHHHHHHHHc-----cCCcEEEcHHHHhccCCcCCceeechhhhHhhHHHHHHHHhCCcEEEEeCCccC
Confidence 345688999999999988764 7899999998874443210 13566778899999999998442
Q ss_pred --------CCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccccccHHHHhcC---CcCcchHHHHHHHH
Q 028621 95 --------PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQ 163 (206)
Q Consensus 95 --------~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~---g~~~~k~~a~~~a~ 163 (206)
.+++||++|+.+|.+|+|+++++||||||||++||+.+|+++++++++++|+.++ |...+|++|+.++.
T Consensus 169 ~~G~~ttlGRGgSD~~Aa~lA~~L~A~~v~i~TDVdGVytaDP~~v~~A~~i~~lsy~Ea~ela~~Gakvlhp~a~~~a~ 248 (327)
T TIGR02078 169 LNGYRVTLGRGGSDYSAVALGVLLNSKLVAIMSDVEGIFTADPKLVPSARLIPYLSYEEIKIAAKLGMKALQWKAADLAK 248 (327)
T ss_pred CCCeEEEcCCCChHHHHHHHHHhcCCCEEEEEECCCccCCCCCCcCCCceEccccCHHHHHHHHHCCchhhHHHHHHHHH
Confidence 2468999999999999999999999999999999999999999999999998864 66678999999999
Q ss_pred hCCCcEEEEcCCCCchHHHHhcCCCcceEEecCC
Q 028621 164 ENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGTW 197 (206)
Q Consensus 164 ~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~~~~ 197 (206)
++|+|++|.|.++|+ .||+|....
T Consensus 249 ~~~Ipi~I~~t~~~~----------~GT~I~~~~ 272 (327)
T TIGR02078 249 EYKIPVLFGRTRDWR----------MGTLISNRS 272 (327)
T ss_pred HCCCeEEEEeCCCcC----------CCcEEecCC
Confidence 999999999998874 599997543
No 56
>PRK05925 aspartate kinase; Provisional
Probab=99.94 E-value=2.8e-26 Score=204.28 Aligned_cols=162 Identities=19% Similarity=0.239 Sum_probs=138.0
Q ss_pred ChhhhhHHHHHHHHHHHHHHHHHHHhCCCCceEecccccccccchh---------HHHHHHH-HhhCCCEEEEeCCCC--
Q 028621 26 DRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPY---------IRRRAVR-HLEKGRVVIFAAGTG-- 93 (206)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~~~---------~~~~l~~-~l~~g~ipvi~g~~g-- 93 (206)
++...|.+..+||++|+.+++.+|++.|+++..++++++...+..+ +.+.+.. .++.+.+||++||.|
T Consensus 98 ~~~~~d~i~s~GE~~Sa~l~a~~L~~~Gi~a~~ld~~~~i~t~~~~~~a~~~~~~~~~~~~~~~~~~~~v~Vv~GF~g~~ 177 (440)
T PRK05925 98 SSEDQARILAIGEDISASLICAYCCTYVLPLEFLEARQVILTDDQYLRAVPDLALMQTAWHELALQEDAIYIMQGFIGAN 177 (440)
T ss_pred CchhhhhheehhHHHHHHHHHHHHHhCCCCeEEEcHHHhEeecCCccccccCHHHHHHHHHHhhccCCcEEEecCcceeC
Confidence 4455688889999999999999999999999999998874444211 2222222 345678999999843
Q ss_pred ---C----CCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccccccHHHHhcC---CcCcchHHHHHHHH
Q 028621 94 ---N----PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQ 163 (206)
Q Consensus 94 ---~----~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~---g~~~~k~~a~~~a~ 163 (206)
. .+++||++|+++|.+++|+.+++||||||||++||+.+|++++|++++++|+.++ |...+++.+.++|.
T Consensus 178 ~~G~~ttLgrGgsD~~AallA~~l~Ad~~~i~TdVdGvytaDP~~~~~A~~i~~is~~ea~ela~~Ga~vl~~~~~~~a~ 257 (440)
T PRK05925 178 SSGKTTVLGRGGSDFSASLIAELCKAREVRIYTDVNGIYTMDPKIIKDAQLIPELSFEEMQNLASFGAKVLHPPMLKPCV 257 (440)
T ss_pred CCCCEEEeccCcHHHHHHHHHHHcCCCEEEEEEcCCccCCCCcCCCCCCeEeeEECHHHHHHHHhCCCCcCCHHHHHHHH
Confidence 1 4799999999999999999999999999999999999999999999999998865 77788999999999
Q ss_pred hCCCcEEEEcCCCCchHHHHhcCCCcceEEecC
Q 028621 164 ENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGT 196 (206)
Q Consensus 164 ~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~~~ 196 (206)
++|+|++|.|+++|+ ..||+|.+.
T Consensus 258 ~~~Ipi~I~~~~~p~---------~~GT~i~~~ 281 (440)
T PRK05925 258 RAGIPIFVTSTFDVT---------KGGTWIYAS 281 (440)
T ss_pred HCCCcEEEecCCCCC---------CCccEEecC
Confidence 999999999999997 479999874
No 57
>cd04252 AAK_NAGK-fArgBP AAK_NAGK-fArgBP: N-Acetyl-L-glutamate kinase (NAGK) of the fungal arginine-biosynthetic pathway (fArgBP). The nuclear-encoded, mitochondrial polyprotein precursor with an N-terminal NAGK (ArgB) domain (this CD), a central DUF619 domain, and a C-terminal reductase domain (ArgC, N-Acetylglutamate Phosphate Reductase, NAGPR). The precursor is cleaved in the mitochondria into two distinct enzymes (NAGK-DUF619 and NAGPR). Native molecular weights of these proteins indicate that the kinase is an octamer whereas the reductase is a dimer. This CD also includes some gamma-proteobacteria (Xanthomonas and Xylella) NAG kinases with an N-terminal NAGK (ArgB) domain (this CD) and a C-terminal DUF619 domain. The DUF619 domain is described as a putative distant homolog of the acetyltransferase, ArgA, predicted to function in NAG synthase association in fungi. Eukaryotic sequences have an N-terminal mitochondrial transit peptide. Members of this NAG kinase domain CD belong to th
Probab=99.94 E-value=7.3e-26 Score=188.35 Aligned_cols=180 Identities=15% Similarity=0.167 Sum_probs=135.7
Q ss_pred ceEEEEEcCChhhhhhhhhhcCCCChhh-----------hhHHHHHHHHHHHHHHHHHHHhCCCCceEeccccc------
Q 028621 2 FQVAIVVGGGNIFRGASAAGNSGLDRSS-----------ADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRM------ 64 (206)
Q Consensus 2 ~~~iiVhGGG~~~~~~~~~~~~~l~~~~-----------~~~~~~~~~~~~~~ll~~~l~~~gi~a~~l~~~~~------ 64 (206)
+++|||||||+| .+.+++++|+++++ ++.+.+...++|..+++. |+++|++++++++..+
T Consensus 29 ~~~VlVHGgg~~--i~~~~~~~gi~~~~~~g~RvT~~~~l~~v~~al~~vn~~iv~~-l~~~g~~a~~l~~~~~~a~~~~ 105 (248)
T cd04252 29 LYPIVVHGAGPQ--LNEELEAAGVEPEYVDGLRVTDPETLAVARKVFLEENLKLVEA-LERNGARARPITSGVFEAEYLD 105 (248)
T ss_pred CcEEEEeCCCHH--HHHHHHHcCCCcEeeCCcccCCHHHHHHHHHHHHHHHHHHHHH-HHhCCCCcccccCceEEEEECc
Confidence 478999999999 45567888888754 233444444899999887 7789999999877422
Q ss_pred ----ccccch--hHHHHHHHHhhCCCEEEEeCC----CCC-CCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCC
Q 028621 65 ----SEVAEP--YIRRRAVRHLEKGRVVIFAAG----TGN-PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNP 133 (206)
Q Consensus 65 ----~~v~~~--~~~~~l~~~l~~g~ipvi~g~----~g~-~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~ 133 (206)
++++++ ...+.++.+|+.|+|||++|. .|. .++|+|.+|+.+|.+|+|++|+|+|||||||+++
T Consensus 106 ~~d~g~~G~v~~i~~~~i~~~L~~g~IPVi~p~~~~~~g~~~nvnaD~~A~~lA~aL~a~kli~ltdv~GV~~~~----- 180 (248)
T cd04252 106 KDKYGLVGKITGVNKAPIEAAIRAGYLPILTSLAETPSGQLLNVNADVAAGELARVLEPLKIVFLNETGGLLDGT----- 180 (248)
T ss_pred CccCCccCceeeECHHHHHHHHHCCCeEEECCceECCCCCEEEECHHHHHHHHHHHcCCCeEEEEECCcccCCCC-----
Confidence 222222 125889999999999999985 233 3599999999999999999999999999999752
Q ss_pred CCcccccccHH-HHhcC-------CcCcchHHHHHHHHhC--CC-cEEEEcCCCCchHH-HHhcCCCcceEE
Q 028621 134 NARLLDTLTYQ-EVTSK-------DLSVMDMTAITLCQEN--NI-PVVVFNLNQPGNIA-KAIQGERVGTLI 193 (206)
Q Consensus 134 ~a~~i~~i~~~-e~~~~-------g~~~~k~~a~~~a~~~--gi-~v~I~~g~~~~~l~-~~l~g~~~GT~i 193 (206)
.++|++++.. +..++ |.+..|++++..+.+. ++ .++|++ +++|. ++|+.++.||+|
T Consensus 181 -g~~i~~i~~~~~~~~l~~~~~vtgGM~~Kl~~~~~~~~~~~~~~~v~i~~---~~~ll~elf~~~g~GT~i 248 (248)
T cd04252 181 -GKKISAINLDEEYDDLMKQPWVKYGTKLKIKEIKELLDTLPRSSSVSITS---PDDLQKELFTHSGAGTLI 248 (248)
T ss_pred -CCcccccCHHHHHHHHHHcCCcCCchHHHHHHHHHHHHhCCCceEEEEEC---CchHHHHHhcCCCCCccC
Confidence 5789999863 44322 2333499988888876 44 588887 57775 788888899986
No 58
>TIGR01890 N-Ac-Glu-synth amino-acid N-acetyltransferase. This model represents a clade of amino-acid N-acetyltransferases acting mainly on glutamate in the first step of the "acetylated" ornithine biosynthesis pathway. For this reason it is also called N-acetylglutamate synthase. The enzyme may also act on aspartate.
Probab=99.94 E-value=8.3e-26 Score=201.45 Aligned_cols=187 Identities=14% Similarity=0.137 Sum_probs=144.0
Q ss_pred ceEEEEEcCChhhhhhhhhhcCCCChhh-----------hhHHHHHHHHHHHHHHHHHHHhCCCCceE-----eccc---
Q 028621 2 FQVAIVVGGGNIFRGASAAGNSGLDRSS-----------ADYIGMLATVMNAIFLQATMESIGIPTRV-----QTAF--- 62 (206)
Q Consensus 2 ~~~iiVhGGG~~~~~~~~~~~~~l~~~~-----------~~~~~~~~~~~~~~ll~~~l~~~gi~a~~-----l~~~--- 62 (206)
.++|||||||++++.+. +++++++++ ++.+.+.+..+|..+++. |++. +++.+ +++.
T Consensus 49 ~~~vlVHGgg~~i~~~~--~~~g~~~~~~~G~RvT~~~~l~~~~~~~g~vn~~l~~~-l~~~-~~~~~~~~~~l~~~dg~ 124 (429)
T TIGR01890 49 VRLVLVHGARPQIERIL--AARGRTPHYHRGLRVTDEASLEQAQQAAGTLRLAIEAR-LSMS-LSNTPMAGSRLPVVSGN 124 (429)
T ss_pred CcEEEEcCCCHHHHHHH--HHcCCCceeeCCcccCCHHHHHHHHHHhChHHHHHHHH-HHhc-CCcccccccCceEccce
Confidence 47999999999999865 556776543 355555677899999886 5544 44433 3332
Q ss_pred -------------ccccccchh--HHHHHHHHhhCCCEEEEeCC----CCC-CCCCcHHHHHHHHHhcCCcEEEEeeccC
Q 028621 63 -------------RMSEVAEPY--IRRRAVRHLEKGRVVIFAAG----TGN-PFFTTDTAAALRCAEINAEVVLKATNVD 122 (206)
Q Consensus 63 -------------~~~~v~~~~--~~~~l~~~l~~g~ipvi~g~----~g~-~~~~sD~~A~~lA~~l~A~~li~ltdV~ 122 (206)
+++++++.. ..+.++.+|++|++||++|. .|. .++|+|.+|+.+|.+|+|++|+|+||||
T Consensus 125 ~~~a~~~~~~~~~~~g~~G~v~~v~~~~l~~ll~~g~ipvi~pi~~~~~g~~~nvnaD~~A~~lA~al~a~kli~ltdv~ 204 (429)
T TIGR01890 125 FVTARPIGVIEGVDYEHTGVIRKIDTEGIRRQLDAGSIVLLSPLGHSPTGETFNLDMEDVATSVAISLKADKLIYFTLSP 204 (429)
T ss_pred EEEEEECCCCcCccccccceEEEEcHHHHHHHHHCCCeEEECCcccCCCCCEEEeCHHHHHHHHHHHcCCCEEEEEeCCC
Confidence 223333321 25889999999999999995 233 3699999999999999999999999999
Q ss_pred ccccCCCCCCCCCcccccccHHHHhcC-----CcC-cchHHHHHHHHhCCC-cEEEEcCCCCchHH-HHhcCCCcceEEe
Q 028621 123 GVYDDNPRRNPNARLLDTLTYQEVTSK-----DLS-VMDMTAITLCQENNI-PVVVFNLNQPGNIA-KAIQGERVGTLIG 194 (206)
Q Consensus 123 Gv~~~dP~~~~~a~~i~~i~~~e~~~~-----g~~-~~k~~a~~~a~~~gi-~v~I~~g~~~~~l~-~~l~g~~~GT~i~ 194 (206)
|||++ +.++|++++.+|+.++ +.+ ..|++++..|.+.|+ +++|++++.|++|. ++|+.++.||+|+
T Consensus 205 Gv~~~------~g~~i~~i~~~~~~~l~~~~~~~~~~~kl~~a~~a~~~gv~~v~i~~g~~~~~l~~el~~~~g~GT~i~ 278 (429)
T TIGR01890 205 GISDP------DGTLAAELSPQEVESLAERLGSETTRRLLSAAVKACRGGVHRSHIVSYAEDGSLLQELFTRDGIGTSIS 278 (429)
T ss_pred cccCC------CCCCcccCCHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCeEEEECCCCCcHHHHHHhcCCCCcceEe
Confidence 99974 2579999998777654 332 459999999999998 59999999999986 6789999999999
Q ss_pred cCCC
Q 028621 195 GTWN 198 (206)
Q Consensus 195 ~~~~ 198 (206)
.+.+
T Consensus 279 ~d~y 282 (429)
T TIGR01890 279 KEAF 282 (429)
T ss_pred ccch
Confidence 8764
No 59
>PRK09181 aspartate kinase; Validated
Probab=99.93 E-value=2.3e-25 Score=200.01 Aligned_cols=161 Identities=11% Similarity=0.099 Sum_probs=135.1
Q ss_pred ChhhhhHHHHHHHHHHHHHHHHHHHhCCCCceEecccccccccchhHHHHHHHHhh----CCCEEEEeCCCCC-------
Q 028621 26 DRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLE----KGRVVIFAAGTGN------- 94 (206)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~~~~~~~l~~~l~----~g~ipvi~g~~g~------- 94 (206)
+++..|.+.+.||++|+.+++.+|++.|+++..++...+..-....+.+.+.+.++ .+.|||++||.+.
T Consensus 135 ~~~~~D~l~s~GE~lSa~lla~~L~~~Gi~a~~ld~~~~~~~~~~~~~~~i~~~l~~~~~~~~v~Vv~GF~~~~~G~itT 214 (475)
T PRK09181 135 LLTVREMLASIGEAHSAFNTALLLQNRGVNARFVDLTGWDDDDPLTLDERIKKAFKDIDVTKELPIVTGYAKCKEGLMRT 214 (475)
T ss_pred ChhHhHHHhhHhHHHHHHHHHHHHHhCCCCeEEeccccccCCcccchHHHHHHHHhhhccCCcEEEecCCcCCCCCCEEe
Confidence 45566889999999999999999999999999977643321111112345555555 4789999998421
Q ss_pred -CCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCC--CCCcccccccHHHHhcC---CcCcchHHHHHHHHhCCCc
Q 028621 95 -PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRN--PNARLLDTLTYQEVTSK---DLSVMDMTAITLCQENNIP 168 (206)
Q Consensus 95 -~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~--~~a~~i~~i~~~e~~~~---g~~~~k~~a~~~a~~~gi~ 168 (206)
.+++||++|+.+|.+|+|+++.+||||+ ||++||+.+ |+++.|+++||+|+.++ |..++|+++..+|.+.+||
T Consensus 215 LGRGGSDyTAailAa~L~A~~~~IwTDV~-I~taDPriV~~~~A~~i~~lsy~Ea~ELA~~GAkVLHp~ti~pa~~~~Ip 293 (475)
T PRK09181 215 FDRGYSEMTFSRIAVLTGADEAIIHKEYH-LSSADPKLVGEDKVVPIGRTNYDVADQLANLGMEAIHPKAAKGLRQAGIP 293 (475)
T ss_pred cCCChHHHHHHHHHHHcCCCEEEEeCCCc-cccCCCCcCCCCCCeEcCccCHHHHHHHHHcCchhcCHHHHHHHHHcCCe
Confidence 3689999999999999999999999997 999999999 68999999999999876 8899999999999999999
Q ss_pred EEEEcCCCCchHHHHhcCCCcceEEecC
Q 028621 169 VVVFNLNQPGNIAKAIQGERVGTLIGGT 196 (206)
Q Consensus 169 v~I~~g~~~~~l~~~l~g~~~GT~i~~~ 196 (206)
++|.|.++|+ ..||+|..+
T Consensus 294 i~V~nt~~p~---------~~GT~I~~~ 312 (475)
T PRK09181 294 LRIKNTFEPE---------HPGTLITKD 312 (475)
T ss_pred EEEecCCCCC---------CCCeEEecC
Confidence 9999999886 579999864
No 60
>cd04237 AAK_NAGS-ABP AAK_NAGS-ABP: N-acetylglutamate (NAG) kinase-like domain of the NAG Synthase (NAGS) of the arginine-biosynthesis pathway (ABP) found in gamma- and beta-proteobacteria and higher plant chloroplasts. Domain architecture of these NAGS consisted of an N-terminal NAG kinase-like (ArgB) domain (this CD) and a C-terminal NAG synthase, acetyltransferase (ArgA) domain. Both bacterial and plant sequences in this CD have a conserved N-terminal extension; a similar sequence in the NAG kinases of the cyclic arginine-biosynthesis pathway has been implicated in feedback inhibition sensing. Plant sequences also have an N-terminal chloroplast transit peptide and an insert (approx. 70 residues) in the C-terminal region of ArgB. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK).
Probab=99.93 E-value=3.6e-25 Score=187.15 Aligned_cols=182 Identities=18% Similarity=0.268 Sum_probs=137.9
Q ss_pred ceEEEEEcCChhhhhhhhhhcCCCChhh-----------hhHHHHHHHHHHHHHHHHHHHhCCCCceEeccc--------
Q 028621 2 FQVAIVVGGGNIFRGASAAGNSGLDRSS-----------ADYIGMLATVMNAIFLQATMESIGIPTRVQTAF-------- 62 (206)
Q Consensus 2 ~~~iiVhGGG~~~~~~~~~~~~~l~~~~-----------~~~~~~~~~~~~~~ll~~~l~~~gi~a~~l~~~-------- 62 (206)
+++|||||||++++.+. ++.++++++ ++.+.+....+|..+.+. |+ +|++++++++.
T Consensus 50 ~~~ViVHGggp~i~~~~--~~~gi~~~~~~G~RvT~~~~l~~~~~~~g~v~~~l~~~-l~-~~~~a~~~~~~~~~~~~~~ 125 (280)
T cd04237 50 IRLVLVHGARPQIDQRL--AERGLEPRYHRGLRITDAAALECVKEAAGAVRLEIEAL-LS-MGLPNSPMAGARIRVVSGN 125 (280)
T ss_pred CcEEEEeCCCHHHHHHH--HHcCCCccccCCcCcCCHHHHHHHHHHHHHHHHHHHHH-HH-hhccccCcCCCceEEecCe
Confidence 47999999999998865 445655432 344444446788887664 65 48877644321
Q ss_pred -------------ccccccch--hHHHHHHHHhhCCCEEEEeCC----CCCC-CCCcHHHHHHHHHhcCCcEEEEeeccC
Q 028621 63 -------------RMSEVAEP--YIRRRAVRHLEKGRVVIFAAG----TGNP-FFTTDTAAALRCAEINAEVVLKATNVD 122 (206)
Q Consensus 63 -------------~~~~v~~~--~~~~~l~~~l~~g~ipvi~g~----~g~~-~~~sD~~A~~lA~~l~A~~li~ltdV~ 122 (206)
+++++++. ...+.++.+|++|.+||++|. .|.. ++++|.+|+.||.+|+|++|+|+||||
T Consensus 126 ~v~~~~~~~~~~~~~g~~G~v~~v~~~~i~~lL~~g~ipv~~~~g~~~~g~~lnvnaD~~A~~LA~~L~a~klv~ltdv~ 205 (280)
T cd04237 126 FVTARPLGVVDGVDFGHTGEVRRIDADAIRRQLDQGSIVLLSPLGYSPTGEVFNLSMEDVATAVAIALKADKLIFLTDGP 205 (280)
T ss_pred EEEEEECCcccCceEeeeccEEEEcHHHHHHHHHCCCEEEECCceECCCCCEEeeCHHHHHHHHHHHcCCCEEEEEeCCC
Confidence 22222221 125889999999999999884 3343 479999999999999999999999999
Q ss_pred ccccCCCCCCCCCcccccccHHHHhcC---C---cCcc--hHHHHHHHHhCCC-cEEEEcCCCCchHH-HHhcCCCcceE
Q 028621 123 GVYDDNPRRNPNARLLDTLTYQEVTSK---D---LSVM--DMTAITLCQENNI-PVVVFNLNQPGNIA-KAIQGERVGTL 192 (206)
Q Consensus 123 Gv~~~dP~~~~~a~~i~~i~~~e~~~~---g---~~~~--k~~a~~~a~~~gi-~v~I~~g~~~~~l~-~~l~g~~~GT~ 192 (206)
|||++ +++++++++.+|+.++ + .++| |++++..+.+.|+ +++|++++.|+.+. ++|+.++.||+
T Consensus 206 GV~~~------~~~~i~~i~~~e~~~l~~~~~~~~ggM~~Kv~~a~~a~~~Gv~~v~I~~~~~~~~ll~elft~~g~GT~ 279 (280)
T cd04237 206 GLLDD------DGELIRELTAQEAEALLETGALLTNDTARLLQAAIEACRGGVPRVHLISYAEDGALLLELFTRDGVGTL 279 (280)
T ss_pred cccCC------CCCccccCCHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHhcCCCCCCc
Confidence 99974 2589999998777653 1 3455 9999999999999 59999999999987 78999999998
Q ss_pred E
Q 028621 193 I 193 (206)
Q Consensus 193 i 193 (206)
|
T Consensus 280 i 280 (280)
T cd04237 280 I 280 (280)
T ss_pred C
Confidence 5
No 61
>COG0263 ProB Glutamate 5-kinase [Amino acid transport and metabolism]
Probab=99.93 E-value=5.7e-25 Score=186.73 Aligned_cols=194 Identities=25% Similarity=0.377 Sum_probs=142.2
Q ss_pred ceEEEEEcCChhhhhhhhhhcCCCChhhh---hH--HHHHHHHHHHHHHHHHHHhCCCCceE--ecccccccccchh--H
Q 028621 2 FQVAIVVGGGNIFRGASAAGNSGLDRSSA---DY--IGMLATVMNAIFLQATMESIGIPTRV--QTAFRMSEVAEPY--I 72 (206)
Q Consensus 2 ~~~iiVhGGG~~~~~~~~~~~~~l~~~~~---~~--~~~~~~~~~~~ll~~~l~~~gi~a~~--l~~~~~~~v~~~~--~ 72 (206)
+++|||--|.=- -|. .++|++++.. +. ....+...-...-..+|..+|+.+-. ++-.|+..- +-| .
T Consensus 45 ~eVilVSSGAia-aG~---~~Lg~~~rp~~l~~kQA~AAVGQ~~Lm~~y~~~f~~~g~~v~QiLLTr~D~~~r-~ry~Na 119 (369)
T COG0263 45 HEVVLVSSGAIA-AGR---TRLGLPKRPKTLAEKQAAAAVGQVRLMQLYEELFARYGIKVGQILLTRDDFSDR-RRYLNA 119 (369)
T ss_pred CEEEEEccchhh-hCh---hhcCCCCCCcchHHHHHHHHhCHHHHHHHHHHHHHhcCCeeeEEEeehhhhhhH-HHHHHH
Confidence 467777665433 243 2356555442 21 22233222222334567788888754 333322110 012 2
Q ss_pred HHHHHHHhhCCCEEEEeCCC-----CCCCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccccccH--HH
Q 028621 73 RRRAVRHLEKGRVVIFAAGT-----GNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTY--QE 145 (206)
Q Consensus 73 ~~~l~~~l~~g~ipvi~g~~-----g~~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~~i~~--~e 145 (206)
+..+..+|+.|.|||++.++ +..|+|||.+|+++|...+||.|+++||+||+||+||+.+|++++|++++. .|
T Consensus 120 r~Tl~~Ll~~gvVPIINENDtva~~EikfGDND~LsA~VA~lv~ADlLvlLsDiDGLyd~nPr~~pdAk~i~~V~~it~e 199 (369)
T COG0263 120 RNTLSALLELGVVPIINENDTVATEEIKFGDNDTLSALVAILVGADLLVLLSDIDGLYDANPRTNPDAKLIPEVEEITPE 199 (369)
T ss_pred HHHHHHHHHCCceeeecCCCceeeeeeeecCCchHHHHHHHHhCCCEEEEEEccCcccCCCCCCCCCCeeehhhcccCHH
Confidence 57899999999999999873 346899999999999999999999999999999999999999999998864 23
Q ss_pred Hhc--------CCcCcc--hHHHHHHHHhCCCcEEEEcCCCCchHHHHhcCCCcceEEecCCCCc
Q 028621 146 VTS--------KDLSVM--DMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGTWNST 200 (206)
Q Consensus 146 ~~~--------~g~~~~--k~~a~~~a~~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~~~~~~~ 200 (206)
+.. +|+++| |+.|++.|.++|++++|++|++|+.+.+++.++..||+|.+...+.
T Consensus 200 i~~~aggsgs~~GTGGM~TKl~AA~iA~~aG~~~iI~~g~~~~~i~~~~~~~~~GT~F~~~~~~~ 264 (369)
T COG0263 200 IEAMAGGSGSELGTGGMRTKLEAAKIATRAGVPVIIASGSKPDVILDALEGEAVGTLFEPQAKER 264 (369)
T ss_pred HHHHhcCCCCCCCcccHHHHHHHHHHHHHcCCcEEEecCCCcchHHHHHhCCCCccEEecCCcch
Confidence 432 256666 9999999999999999999999999999999999999999876544
No 62
>cd04248 AAK_AK-Ectoine AAK_AK-Ectoine: Amino Acid Kinase Superfamily (AAK), AK-Ectoine; this CD includes the N-terminal catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and other various halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinase and L-aspartate-semialdehyde dehydrogenase. The M. alcaliphilum and the V. cholerae aspartokinases are encoded on the ectABCask operon.
Probab=99.93 E-value=4.4e-25 Score=186.40 Aligned_cols=160 Identities=13% Similarity=0.098 Sum_probs=132.3
Q ss_pred CChhhhhHHHHHHHHHHHHHHHHHHHhCCCCceEeccccccc---ccch-hHHHHHHHHhhCCCEEEEeCCCC-------
Q 028621 25 LDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSE---VAEP-YIRRRAVRHLEKGRVVIFAAGTG------- 93 (206)
Q Consensus 25 l~~~~~~~~~~~~~~~~~~ll~~~l~~~gi~a~~l~~~~~~~---v~~~-~~~~~l~~~l~~g~ipvi~g~~g------- 93 (206)
+++...|.+.++||++|+.+++.+|++.|+++..++...+.. .+.. .+.+.++.+...+.+||++||.+
T Consensus 128 ~~~~~rd~l~S~GE~~Sa~l~a~~L~~~Gi~A~~vD~~~~~~~~~~t~~~~i~~~~~~~~~~~~v~IvtGF~~~~~G~it 207 (304)
T cd04248 128 HLLAARELLASLGEAHSAFNTALLLQNRGVNARFVDLSGWRDSGDMTLDERISEAFRDIDPRDELPIVTGYAKCAEGLMR 207 (304)
T ss_pred CCHHHHHHHhhhCHHHHHHHHHHHHHHCCCCeEEECcccccccCCCCcHHHHHHHHHhhccCCcEEEeCCccCCCCCCEE
Confidence 456677899999999999999999999999999866654321 1111 12233333223578999999832
Q ss_pred -CCCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCC--CCCcccccccHHHHhcC---CcCcchHHHHHHHHhCCC
Q 028621 94 -NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRN--PNARLLDTLTYQEVTSK---DLSVMDMTAITLCQENNI 167 (206)
Q Consensus 94 -~~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~--~~a~~i~~i~~~e~~~~---g~~~~k~~a~~~a~~~gi 167 (206)
..++.||+.|+.+|.+|+|+.+.+||||+ ||++||+.+ ++++.|++++|+|+.++ |.+++|++++.++.+.+|
T Consensus 208 TLGRGGSDyTAs~iAa~l~A~ev~I~TDV~-i~taDPriV~~~~A~~i~~lsY~EA~ELA~~GakvLHP~ai~pa~~~~I 286 (304)
T cd04248 208 EFDRGYSEMTFSRIAVLTGASEAIIHKEFH-LSSADPKLVGEDKARPIGRTNYDVADQLANLGMEAIHPKAAKGLRQAGI 286 (304)
T ss_pred EcCCCcHHHHHHHHHHHcCCCEEEEECCCc-eecCCCCccCCCCceEeCccCHHHHHHHHHcChhhcCHHHHHHHHHcCC
Confidence 13689999999999999999999999996 999999999 58999999999998875 888999999999999999
Q ss_pred cEEEEcCCCCchHHHHhcCCCcceEEe
Q 028621 168 PVVVFNLNQPGNIAKAIQGERVGTLIG 194 (206)
Q Consensus 168 ~v~I~~g~~~~~l~~~l~g~~~GT~i~ 194 (206)
|++|.|.++|+ ..||+|.
T Consensus 287 Pi~Vkntf~P~---------~~GTlIt 304 (304)
T cd04248 287 PLRVKNTFEPD---------HPGTLIT 304 (304)
T ss_pred eEEEecCCCCC---------CCCceeC
Confidence 99999999987 5799984
No 63
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=99.93 E-value=2.3e-25 Score=210.59 Aligned_cols=162 Identities=19% Similarity=0.181 Sum_probs=139.8
Q ss_pred ChhhhhHHHHHHHHHHHHHHHHHHHhCCCCceEecccccccccch---h-----HHHHHHHHhhC--CCEEEEeCCCC--
Q 028621 26 DRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEP---Y-----IRRRAVRHLEK--GRVVIFAAGTG-- 93 (206)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~~---~-----~~~~l~~~l~~--g~ipvi~g~~g-- 93 (206)
++...|.+.+.||++|+.+++.+|++.|+++..++++++...+.. . ..+.+++++.. +.+||++||.|
T Consensus 118 ~~~~~d~ils~GE~~Sa~lla~~L~~~G~~a~~ld~~~~i~~~~~~~~~i~~~~~~~~l~~~~~~~~~~v~Vv~GF~g~~ 197 (810)
T PRK09466 118 NDAQYAEVVGHGEVWSARLMAALLNQQGLPAAWLDARSFLRAERAAQPQVDEGLSYPLLQQLLAQHPGKRLVVTGFISRN 197 (810)
T ss_pred CchhhhheecHHHHHHHHHHHHHHHhCCCCcEEEcHHHheecCCCCCcccchhhhHHHHHHHHhccCCeEEEeeCccccC
Confidence 455568888999999999999999999999999999886433221 1 23567777754 37999999854
Q ss_pred ---C----CCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccccccHHHHhcC---CcCcchHHHHHHHH
Q 028621 94 ---N----PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQ 163 (206)
Q Consensus 94 ---~----~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~---g~~~~k~~a~~~a~ 163 (206)
. .+++||++|+.+|.+|+|+++.+||||||||++||+.+|++++|+++||+|+.++ |..++|+++..++.
T Consensus 198 ~~G~~ttLGRGGSD~tA~~la~~l~A~~v~i~tDV~Gi~taDPr~v~~A~~i~~isy~Ea~ela~~GakVlHp~ti~pa~ 277 (810)
T PRK09466 198 EAGETVLLGRNGSDYSATLIGALAGVERVTIWSDVAGVYSADPRKVKDACLLPLLRLDEASELARLAAPVLHARTLQPVS 277 (810)
T ss_pred CCCCEEEcCCChHHHHHHHHHHHcCCCEEEEEeCCCccccCCcccCCCceEcccCCHHHHHHHHHcCccccCHHHHHHHH
Confidence 1 3689999999999999999999999999999999999999999999999998875 88999999999999
Q ss_pred hCCCcEEEEcCCCCchHHHHhcCCCcceEEecC
Q 028621 164 ENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGT 196 (206)
Q Consensus 164 ~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~~~ 196 (206)
+++||++|.|.++|+ ..||+|..+
T Consensus 278 ~~~Ipi~V~ntf~p~---------~~GT~I~~~ 301 (810)
T PRK09466 278 GSDIDLQLRCSYQPE---------QGSTRIERV 301 (810)
T ss_pred HcCCeEEEecCCCCC---------CCceEEecC
Confidence 999999999999986 579999753
No 64
>PF00696 AA_kinase: Amino acid kinase family Match to Glutamate-5-kinases, C-terminal end of the alignment Match to Aspartate kinases; InterPro: IPR001048 This entry contains proteins with various specificities and includes the aspartate, glutamate and uridylate kinase families. In prokaryotes and plants the synthesis of the essential amino acids lysine and threonine is predominantly regulated by feed-back inhibition of aspartate kinase (AK) and dihydrodipicolinate synthase (DHPS). In Escherichia coli, thrA, metLM, and lysC encode aspartokinase isozymes that show feedback inhibition by threonine, methionine, and lysine, respectively []. The lysine-sensitive isoenzyme of aspartate kinase from spinach leaves has a subunit composition of 4 large and 4 small subunits []. In plants although the control of carbon fixation and nitrogen assimilation has been studied in detail, relatively little is known about the regulation of carbon and nitrogen flow into amino acids. The metabolic regulation of expression of an Arabidopsis thaliana aspartate kinase/homoserine dehydrogenase (AK/HSD) gene, which encodes two linked key enzymes in the biosynthetic pathway of aspartate family amino acids has been studied []. The conversion of aspartate into either the storage amino acid asparagine or aspartate family amino acids may be subject to a coordinated, reciprocal metabolic control, and this biochemical branch point is a part of a larger, coordinated regulatory mechanism of nitrogen and carbon storage and utilization.; GO: 0008652 cellular amino acid biosynthetic process; PDB: 2X2W_B 2WXB_B 1B7B_C 2J4L_F 2J4K_E 2J4J_F 2OGX_B 3QUO_A 3D40_A 3D41_A ....
Probab=99.93 E-value=4e-25 Score=182.41 Aligned_cols=169 Identities=26% Similarity=0.330 Sum_probs=127.3
Q ss_pred ceEEEEEcCChhhhhhhhhhcCCCChhhh----------hH--HHHHHHHHHH-----HHHHHHHHhCCCCceEeccccc
Q 028621 2 FQVAIVVGGGNIFRGASAAGNSGLDRSSA----------DY--IGMLATVMNA-----IFLQATMESIGIPTRVQTAFRM 64 (206)
Q Consensus 2 ~~~iiVhGGG~~~~~~~~~~~~~l~~~~~----------~~--~~~~~~~~~~-----~ll~~~l~~~gi~a~~l~~~~~ 64 (206)
+++|||||||++++. +.+++++.+... .. ...+...+|. .+++. +...+..++.+.+.+.
T Consensus 34 ~~vvvV~g~g~~~~~--~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~-~~~~~~~~~~~~~~~~ 110 (242)
T PF00696_consen 34 IKVVVVHGGGSFTDE--LLEKYGIEPKFVDGSRVTDIETGLIITMAAAAELNRDALLDEIVSA-GERLGAHAVGLSLSDG 110 (242)
T ss_dssp SEEEEEESSHHHHHH--HHHHCTHTTSEETHHCHBHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHCTHHEEEHHHTGG
T ss_pred CeEEEEECChhhcCc--hHHhccCCcccchhhhhhhhhhhHHHHHHHhhccccchhHHHHHHh-hhhhhHHHHhhhhhcc
Confidence 689999999999655 456677655332 11 1123345666 66665 7778988888777764
Q ss_pred ccccch-----hHHHHHHHHhhCCCEEEEeCC-----CCC----CCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCC
Q 028621 65 SEVAEP-----YIRRRAVRHLEKGRVVIFAAG-----TGN----PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPR 130 (206)
Q Consensus 65 ~~v~~~-----~~~~~l~~~l~~g~ipvi~g~-----~g~----~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~ 130 (206)
+..... ...+.++.+|++|.|||++|+ .|. +++++|++|+++|.+|+|++|+|+|||||||++||+
T Consensus 111 ~~~~~~~~~~~~~~~~i~~~l~~~~ipVv~g~~~~~~~g~~~~~~~~~sD~~A~~lA~~l~A~~li~~tdV~Gv~~~dP~ 190 (242)
T PF00696_consen 111 GISAAKRDAREVDKEAIRELLEQGIIPVVSGFAGIDDDGEVTTLGNVSSDYIAALLAAALGADKLIFLTDVDGVYTADPR 190 (242)
T ss_dssp TEEEEEEESSEEHHHHHHHHHHTTSEEEEESEEEEETTSTEEEEEEETHHHHHHHHHHHTTCSEEEEEESSSSEBSSSTT
T ss_pred cchhhhhhhhhhHHHHHHHHHHCCCEEEEeCCcccCCCCCcccCCCCCHHHHHHHHHHHhCchhhhhhhhcCceeecCCC
Confidence 333221 245789999999999999986 233 579999999999999999999999999999999999
Q ss_pred CCCCCcccccccHHHHhcCC------cCcc--hHHHHH-HHHhCCCcEEEEc
Q 028621 131 RNPNARLLDTLTYQEVTSKD------LSVM--DMTAIT-LCQENNIPVVVFN 173 (206)
Q Consensus 131 ~~~~a~~i~~i~~~e~~~~g------~~~~--k~~a~~-~a~~~gi~v~I~~ 173 (206)
.+|+++++++++++|+.++. .++| |+.++. .+.+.+++|+|+|
T Consensus 191 ~~~~~~~i~~l~~~e~~~l~~~~~~~~~gm~~k~~~a~~~~~~~~~~v~I~n 242 (242)
T PF00696_consen 191 IVPDARLIPELSYDEAEELASKSGDVTGGMKPKHPAALEAAEEGGIPVHIIN 242 (242)
T ss_dssp TSTTSEBESEEEHHHHHHHHHHTTSSTTTHHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CCCCCeeeeEeeHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCCcEEEeC
Confidence 99999999999999988742 3444 555555 5555578999986
No 65
>PRK05279 N-acetylglutamate synthase; Validated
Probab=99.93 E-value=1.3e-24 Score=194.31 Aligned_cols=188 Identities=15% Similarity=0.210 Sum_probs=141.6
Q ss_pred ceEEEEEcCChhhhhhhhhhcCCCChhh-----------hhHHHHHHHHHHHHHHHHHHHhCCCCceEecccc-------
Q 028621 2 FQVAIVVGGGNIFRGASAAGNSGLDRSS-----------ADYIGMLATVMNAIFLQATMESIGIPTRVQTAFR------- 63 (206)
Q Consensus 2 ~~~iiVhGGG~~~~~~~~~~~~~l~~~~-----------~~~~~~~~~~~~~~ll~~~l~~~gi~a~~l~~~~------- 63 (206)
+++|||||||++++.+. ++.|+.+++ ++...+....+|..+.+. |+ +|++++++.+.+
T Consensus 57 ~~~VlVHGgg~~i~~~~--~~~g~~~~~~~G~RvT~~~~l~~~~~~~g~v~~~l~~~-l~-~g~~a~~~~~~~~~~~~~~ 132 (441)
T PRK05279 57 IRLVLVHGARPQIEEQL--AARGIEPRYHKGLRVTDAAALECVKQAAGELRLDIEAR-LS-MGLPNTPMAGAHIRVVSGN 132 (441)
T ss_pred CeEEEECCCCHHHHHHH--HHcCCCceecCCcccCCHHHHHHHHHHHHHHHHHHHHH-Hh-ccCCCCcccCCcceEeecc
Confidence 47999999999998865 456666443 233334445888887664 65 588887754322
Q ss_pred --------------cccccchh--HHHHHHHHhhCCCEEEEeCC----CCC-CCCCcHHHHHHHHHhcCCcEEEEeeccC
Q 028621 64 --------------MSEVAEPY--IRRRAVRHLEKGRVVIFAAG----TGN-PFFTTDTAAALRCAEINAEVVLKATNVD 122 (206)
Q Consensus 64 --------------~~~v~~~~--~~~~l~~~l~~g~ipvi~g~----~g~-~~~~sD~~A~~lA~~l~A~~li~ltdV~ 122 (206)
++++++.. ..+.++.+|++|.+||++|. .|. .++|+|.+|+.||.+|+|++|+|+||||
T Consensus 133 ~~~~~~~~~~~~~~~g~~G~v~~v~~~~i~~ll~~g~ipV~~~i~~~~~g~~~ni~~D~~a~~lA~~l~a~~lv~ltdv~ 212 (441)
T PRK05279 133 FVTARPLGVDDGVDYQHTGEVRRIDAEAIRRQLDSGAIVLLSPLGYSPTGESFNLTMEEVATQVAIALKADKLIFFTESQ 212 (441)
T ss_pred EEEEEECCCCCCccccceeeEEEEeHHHHHHHHHCCCeEEECCceECCCCCEEEECHHHHHHHHHHHcCCCEEEEEECCC
Confidence 22232221 25789999999999999885 233 3589999999999999999999999999
Q ss_pred ccccCCCCCCCCCcccccccHHHHhcC------C--cCcc--hHHHHHHHHhCCC-cEEEEcCCCCchHHH-HhcCCCcc
Q 028621 123 GVYDDNPRRNPNARLLDTLTYQEVTSK------D--LSVM--DMTAITLCQENNI-PVVVFNLNQPGNIAK-AIQGERVG 190 (206)
Q Consensus 123 Gv~~~dP~~~~~a~~i~~i~~~e~~~~------g--~~~~--k~~a~~~a~~~gi-~v~I~~g~~~~~l~~-~l~g~~~G 190 (206)
|||++ ++++|++++.+|+.++ + .++| |++++..+.++|+ +++|++++.|++|.. +++.++.|
T Consensus 213 GV~~~------~~~~i~~i~~~~~~~~~~~~~~~~~~ggM~~Kv~~a~~~~~~gv~~v~i~~~~~~~~l~~~l~~~~g~G 286 (441)
T PRK05279 213 GVLDE------DGELIRELSPNEAQALLEALEDGDYNSGTARFLRAAVKACRGGVRRSHLISYAEDGALLQELFTRDGIG 286 (441)
T ss_pred CccCC------CCchhhhCCHHHHHHHHhhhhcCCCCccHHHHHHHHHHHHHcCCCEEEEecCCCCcHHHHHHhcCCCCc
Confidence 99963 3689999998776542 1 2444 9999999999999 599999999999884 66667799
Q ss_pred eEEecCCCC
Q 028621 191 TLIGGTWNS 199 (206)
Q Consensus 191 T~i~~~~~~ 199 (206)
|+|..+.+.
T Consensus 287 T~i~~~~y~ 295 (441)
T PRK05279 287 TMIVMESLE 295 (441)
T ss_pred eEEecCchH
Confidence 999987543
No 66
>cd04235 AAK_CK AAK_CK: Carbamate kinase (CK) catalyzes both the ATP-phosphorylation of carbamate and carbamoyl phosphate (CP) utilization with the production of ATP from ADP and CP. Both CK (this CD) and nonhomologous CP synthetase synthesize carbamoyl phosphate, an essential precursor of arginine and pyrimidine bases, in the presence of ATP, bicarbonate, and ammonia. CK is a homodimer of 33 kDa subunits and is a member of the Amino Acid Kinase Superfamily (AAK).
Probab=99.92 E-value=2.3e-24 Score=183.19 Aligned_cols=186 Identities=28% Similarity=0.357 Sum_probs=135.1
Q ss_pred ceEEEEEcCChhh----hhhhhhh----cCCCChhhhhHHHHHHHHHHHHHHHHHHHhCCCCceEeccccccccc-----
Q 028621 2 FQVAIVVGGGNIF----RGASAAG----NSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVA----- 68 (206)
Q Consensus 2 ~~~iiVhGGG~~~----~~~~~~~----~~~l~~~~~~~~~~~~~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~----- 68 (206)
++++|+||+|+++ ++...+. .+.++.-..+.+++++..+ ..-+...|...|++....+......++
T Consensus 42 ~~vvi~hGnGPqvG~i~~~~~~~~~~~~~~pld~~~a~~~G~ig~~~-~~al~~~l~~~~~~~~v~t~~t~~~V~~~dpa 120 (308)
T cd04235 42 HEVVITHGNGPQVGNLLLQNEAAAEKVPAYPLDVCGAMSQGMIGYML-QQALDNELPKRGIDKPVVTLVTQVVVDANDPA 120 (308)
T ss_pred CEEEEEECCcHHHHHHHHHHHhccccCCCCCcchhcchhhHHHHHHH-HHHHHHHHHHcCCCCceEEEEeEEEEcCCCcc
Confidence 7899999999554 4432221 2345555568889999888 555666788888765433322110010
Q ss_pred -----------------------------------------chh---H--HHHHHHHhhCCCEEEEeCCCCCC-------
Q 028621 69 -----------------------------------------EPY---I--RRRAVRHLEKGRVVIFAAGTGNP------- 95 (206)
Q Consensus 69 -----------------------------------------~~~---~--~~~l~~~l~~g~ipvi~g~~g~~------- 95 (206)
.|. + .+.++.+|++|.|||++|+.|.|
T Consensus 121 f~~ptKpiG~~y~~~~a~~~~~~~g~~~~~d~~~g~rrvV~SP~P~~iv~~~~I~~Ll~~g~IpI~~GggGiPv~~~~~~ 200 (308)
T cd04235 121 FKNPTKPIGPFYSEEEAEELAAEKGWTFKEDAGRGYRRVVPSPKPKDIVEIEAIKTLVDNGVIVIAAGGGGIPVVREGGG 200 (308)
T ss_pred ccCCCCCcCCCcCHHHHHHHHHHcCCEEEEeCCCCceeeeCCCCCccccCHHHHHHHHHCCCEEEEECCCccCEEEcCCc
Confidence 010 1 36788899999999999865544
Q ss_pred ------CCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccccccHHHHhcC------CcCcc--hHHHHHH
Q 028621 96 ------FFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK------DLSVM--DMTAITL 161 (206)
Q Consensus 96 ------~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~------g~~~~--k~~a~~~ 161 (206)
++|+|++|+++|.+++||+|+++|||||||++++ .|++++|++++++|+.++ +.++| |++++..
T Consensus 201 ~~gveaVid~D~~AallA~~l~Ad~LiilTdVdGVy~~~~--~pda~~i~~Is~~e~~~l~~~g~~~tGGM~pKv~aA~~ 278 (308)
T cd04235 201 LKGVEAVIDKDLASALLAEEINADLLVILTDVDNVYINFG--KPNQKALEQVTVEELEKYIEEGQFAPGSMGPKVEAAIR 278 (308)
T ss_pred eeeeeeccCccHHHHHHHHHcCCCEEEEEecCCeEECCCC--CCCCeEcCCcCHHHHHHHHhcCccccCCcHHHHHHHHH
Confidence 3567999999999999999999999999999654 578999999999887643 23445 9999977
Q ss_pred HHhCC-CcEEEEcCCCCchHHHHhcCCCcceEEe
Q 028621 162 CQENN-IPVVVFNLNQPGNIAKAIQGERVGTLIG 194 (206)
Q Consensus 162 a~~~g-i~v~I~~g~~~~~l~~~l~g~~~GT~i~ 194 (206)
+.+.+ .+++|++ ++++.++|+|+ .||+|.
T Consensus 279 ~a~~gg~~v~I~~---~~~i~~aL~G~-~GT~I~ 308 (308)
T cd04235 279 FVESGGKKAIITS---LENAEAALEGK-AGTVIV 308 (308)
T ss_pred HHHhCCCeEEECC---HHHHHHHHCCC-CCeEEC
Confidence 66654 6788876 78899999998 799983
No 67
>PRK12353 putative amino acid kinase; Reviewed
Probab=99.92 E-value=4.2e-24 Score=183.03 Aligned_cols=117 Identities=26% Similarity=0.328 Sum_probs=98.2
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCC-------------CCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccc
Q 028621 73 RRRAVRHLEKGRVVIFAAGTGNP-------------FFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLD 139 (206)
Q Consensus 73 ~~~l~~~l~~g~ipvi~g~~g~~-------------~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~ 139 (206)
.+.++.+|++|.|||++|+.|.| ++|+|.+|+++|.+|+||+|+++|||||||+++| .|++++|+
T Consensus 175 ~~~i~~lL~~g~IpV~~g~gg~Pi~~~~~~~~~~~~~~d~D~lAa~lA~~l~Ad~Li~lTdvdGVy~~~~--~~~a~~i~ 252 (314)
T PRK12353 175 IEAIKTLVDAGQVVIAAGGGGIPVIREGGGLKGVEAVIDKDFASAKLAELVDADLLIILTAVDKVYINFG--KPNQKKLD 252 (314)
T ss_pred HHHHHHHHHCCCEEEEcCCCCCCEEEeCCceeeeeEecCHHHHHHHHHHHhCCCEEEEEeCCccccCCCC--CCCCeECc
Confidence 47888999999999999763322 3788999999999999999999999999999766 47899999
Q ss_pred cccHHHHhcC------CcCcc--hHHHHHHHH--hCCCcEEEEcCCCCchHHHHhcCCCcceEEec
Q 028621 140 TLTYQEVTSK------DLSVM--DMTAITLCQ--ENNIPVVVFNLNQPGNIAKAIQGERVGTLIGG 195 (206)
Q Consensus 140 ~i~~~e~~~~------g~~~~--k~~a~~~a~--~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~~ 195 (206)
+++++|+.++ +.++| |+++|..+. +.|++++|++ ++++.++++|+ .||+|.+
T Consensus 253 ~i~~~e~~~~~~~~~~~tGGM~~Kl~aA~~a~~~~~g~~v~I~~---~~~i~~~l~g~-~GT~i~~ 314 (314)
T PRK12353 253 EVTVSEAEKYIEEGQFAPGSMLPKVEAAISFVESRPGRKAIITS---LEKAKEALEGK-AGTVIVK 314 (314)
T ss_pred CcCHHHHHHHHhcCCcCCCCcHHHHHHHHHHHHHcCCCEEEECC---chHHHHHhCCC-CCeEecC
Confidence 9998876643 33445 899998877 6788999997 78899999998 8999964
No 68
>TIGR00761 argB acetylglutamate kinase. This model describes N-acetylglutamate kinases (ArgB) of many prokaryotes and the N-acetylglutamate kinase domains of multifunctional proteins from yeasts. This enzyme is the second step in the "acetylated" ornithine biosynthesis pathway. A related group of enzymes representing the first step of the pathway contain a homologous domain and are excluded from this model.
Probab=99.92 E-value=1.7e-24 Score=178.28 Aligned_cols=162 Identities=19% Similarity=0.201 Sum_probs=124.6
Q ss_pred ceEEEEEcCChhhhhhhhhhcCCCChhh-----------hhHHHH-HHHHHHHHHHHHHHHhCCCCceEeccccccccc-
Q 028621 2 FQVAIVVGGGNIFRGASAAGNSGLDRSS-----------ADYIGM-LATVMNAIFLQATMESIGIPTRVQTAFRMSEVA- 68 (206)
Q Consensus 2 ~~~iiVhGGG~~~~~~~~~~~~~l~~~~-----------~~~~~~-~~~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~- 68 (206)
.++|||||||++ .+.++++++++.++ ++.+.. +++++|..+++ .|+++|++++++++.+...+.
T Consensus 30 ~~~VlVhggg~~--~~~~~~~~~~~~~~~~g~r~t~~~~~~~~~~~~~g~~~~~i~~-~L~~~G~~a~~l~~~~~~~it~ 106 (231)
T TIGR00761 30 IKPVIVHGGGPE--INELLEALGIPPEFKNGLRVTDKETLEVVEMVLIGQVNKELVA-LLNKHGINAIGLTGGDGQLFTA 106 (231)
T ss_pred CCEEEEcCCcHH--HHHHHHHcCCCCEecCCCccCCHHHHHHHHHHHhcchHHHHHH-HHHhCCCCcccccCCCCCEEEE
Confidence 468999999999 44456667754322 122222 35589998888 588899999999998753331
Q ss_pred ------------ch--hHHHHHHHHhhCCCEEEEeCC----CCC-CCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCC
Q 028621 69 ------------EP--YIRRRAVRHLEKGRVVIFAAG----TGN-PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNP 129 (206)
Q Consensus 69 ------------~~--~~~~~l~~~l~~g~ipvi~g~----~g~-~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP 129 (206)
+. ...+.++++|++|.|||++|+ .|. .++++|++|+.+|.+|+|++++|+|||||||++||
T Consensus 107 ~~~~~~~~~~~g~i~~i~~~~i~~~l~~g~IPVi~~~~~~~~g~~~~l~sD~~A~~lA~~l~A~~li~ltdv~Gv~~~d~ 186 (231)
T TIGR00761 107 RSLDKEDLGYVGEIKKVNKALLEALLKAGYIPVISSLALTAEGQALNVNADTAAGALAAALGAEKLVLLTDVPGILNGDG 186 (231)
T ss_pred EECCCccCCcccceEEEcHHHHHHHHHCCCeEEECCCccCCCCcEEEeCHHHHHHHHHHHcCCCEEEEEECCCCeecCCC
Confidence 11 125889999999999999995 122 36899999999999999999999999999999877
Q ss_pred CCCCCCcccccccHHHHhcC---C--cCcc--hHHHHHHHHhCCCc-EEE
Q 028621 130 RRNPNARLLDTLTYQEVTSK---D--LSVM--DMTAITLCQENNIP-VVV 171 (206)
Q Consensus 130 ~~~~~a~~i~~i~~~e~~~~---g--~~~~--k~~a~~~a~~~gi~-v~I 171 (206)
.++|++++++|+.++ + .++| |+++|..+.+.|++ ++|
T Consensus 187 -----~~~i~~i~~~e~~~l~~~~~~tggm~~Kl~~a~~a~~~gv~~v~i 231 (231)
T TIGR00761 187 -----QSLISEIPLEEIEQLIEQGIITGGMIPKVNAALEALRGGVKSVHI 231 (231)
T ss_pred -----CeeccccCHHHHHHHHHcCCCCCchHHHHHHHHHHHHcCCCEEEC
Confidence 368999999887654 2 3455 99999999999997 554
No 69
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=99.92 E-value=1.9e-24 Score=205.34 Aligned_cols=162 Identities=27% Similarity=0.314 Sum_probs=139.3
Q ss_pred ChhhhhHHHHHHHHHHHHHHHHHHHhCCCCceEecccccccccch---------hHHHHHHHHh-hCCCEEEEeCCCC--
Q 028621 26 DRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEP---------YIRRRAVRHL-EKGRVVIFAAGTG-- 93 (206)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~~---------~~~~~l~~~l-~~g~ipvi~g~~g-- 93 (206)
+++..|.+..+||++|+.+++.+|++.|+++..++++++...+.. ...+.+++++ +.+.+||++||.|
T Consensus 115 ~~~~~d~i~s~GE~lSa~lla~~L~~~Gi~a~~ld~~~~i~t~~~~~~~~~~~~~~~~~i~~~~~~~~~v~Vv~Gfig~~ 194 (819)
T PRK09436 115 PDSVNAAIISRGERLSIAIMAAVLEARGHDVTVIDPRELLLADGHYLESTVDIAESTRRIAASFIPADHVILMPGFTAGN 194 (819)
T ss_pred ChhhhhheeeHHHHHHHHHHHHHHHhCCCCeEEECHHHeEEecCCCCCceechHhhHHHHHHHHhcCCcEEEecCcccCC
Confidence 455568888899999999999999999999999999886443321 1234556554 4688999999843
Q ss_pred ---C----CCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccccccHHHHhcC---CcCcchHHHHHHHH
Q 028621 94 ---N----PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQ 163 (206)
Q Consensus 94 ---~----~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~---g~~~~k~~a~~~a~ 163 (206)
. .+++||++|+++|..++|+.+++||||||||++||+.+|++++|++++|+|+.++ |.+++|++|+.+|.
T Consensus 195 ~~G~~ttlGRgGSD~~A~~~A~~l~A~~~~i~tdVdGvyt~DP~~~~~A~~i~~isy~ea~el~~~G~kvlhp~a~~~a~ 274 (819)
T PRK09436 195 EKGELVTLGRNGSDYSAAILAACLDADCCEIWTDVDGVYTADPRVVPDARLLKSLSYQEAMELSYFGAKVLHPRTIAPIA 274 (819)
T ss_pred CCCCEEEeCCCCchHHHHHHHHHcCCCEEEEEECCCceECCCCCCCCCCeEeeEecHHHHHHHHhcCCccchHHHHHHHH
Confidence 1 3688999999999999999999999999999999999999999999999998874 88899999999999
Q ss_pred hCCCcEEEEcCCCCchHHHHhcCCCcceEEecC
Q 028621 164 ENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGT 196 (206)
Q Consensus 164 ~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~~~ 196 (206)
++++|++|.|+++|+ ..||+|..+
T Consensus 275 ~~~Ipi~i~n~~~p~---------~~GT~I~~~ 298 (819)
T PRK09436 275 QFQIPCLIKNTFNPQ---------APGTLIGAE 298 (819)
T ss_pred HCCceEEEccCCCCC---------CCceEEEec
Confidence 999999999999987 579999764
No 70
>cd04236 AAK_NAGS-Urea AAK_NAGS-Urea: N-acetylglutamate (NAG) kinase-like domain of the NAG Synthase (NAGS) of the urea cycle found in animals. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate; NAG is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Ureogenic NAGS activity is dependent on the concentration of glutamate (substrate) and arginine (activator). Domain architecture of ureogenic NAGS consists of an N-terminal NAG kinase-like (ArgB) domain (this CD) and a C-terminal DUF619 domain. Members of this CD belong to the protein superfamily, the Amino Acid Kinase Family (AAKF).
Probab=99.92 E-value=2e-24 Score=180.99 Aligned_cols=175 Identities=10% Similarity=0.107 Sum_probs=134.9
Q ss_pred ceEEEEEcCChhhhhhhhhhcCCCChhhhhHHHHHHHHHHHHHHHHHHHhCCCCceEeccccc----------ccccchh
Q 028621 2 FQVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRM----------SEVAEPY 71 (206)
Q Consensus 2 ~~~iiVhGGG~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ll~~~l~~~gi~a~~l~~~~~----------~~v~~~~ 71 (206)
.++|||||||++++... + +..+...-+.+. ..|..+++. |+++|++++++++.+. +++++..
T Consensus 68 l~~VlVHGggp~i~~~l--~----~~~~~~~~~v~~-~~n~~Lv~~-L~~~G~~A~gl~g~~~~i~a~~~~d~g~vG~V~ 139 (271)
T cd04236 68 MKLLVVMGLSAPDGTNM--S----DLELQAARSRLV-KDCKTLVEA-LQANSAAAHPLFSGESVLQAEEPEPGASKGPSV 139 (271)
T ss_pred CeEEEEeCCChHHhhhh--c----CCcchheehhHH-HHHHHHHHH-HHhCCCCeeeecCccceEEEEEcccCCccceEE
Confidence 57899999999987632 2 222222222334 889999886 7889999999988732 1222221
Q ss_pred --HHHHHHHHhhCCCEEEEeCC----CCCC-CCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccccccH-
Q 028621 72 --IRRRAVRHLEKGRVVIFAAG----TGNP-FFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTY- 143 (206)
Q Consensus 72 --~~~~l~~~l~~g~ipvi~g~----~g~~-~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~~i~~- 143 (206)
..+.++.+|++|.|||++|. .|+. ++++|.+|+.+|.+|+|++|+|+||++|||+++ .++|++++.
T Consensus 140 ~Vd~~~I~~lL~~g~IPVisplg~~~~G~~~NiNaD~~A~~lA~aL~A~KLIfltd~~GV~~~~------g~lI~~l~~~ 213 (271)
T cd04236 140 SVDTELLQWCLGSGHIPLVCPIGETSSGRSVSLDSSEVTTAIAKALQPIKVIFLNRSGGLRDQK------HKVLPQVHLP 213 (271)
T ss_pred EECHHHHHHHHhCCCeEEECCceECCCCCEEEECHHHHHHHHHHHcCCCEEEEEeCCcceECCC------CCCccccCcH
Confidence 25889999999999999995 3443 599999999999999999999999999999742 579999995
Q ss_pred HHHhcC-------CcC---cchHHHHHHHHhCCCcEEEEcCCCCchHH-HHhcCCCcceEE
Q 028621 144 QEVTSK-------DLS---VMDMTAITLCQENNIPVVVFNLNQPGNIA-KAIQGERVGTLI 193 (206)
Q Consensus 144 ~e~~~~-------g~~---~~k~~a~~~a~~~gi~v~I~~g~~~~~l~-~~l~g~~~GT~i 193 (206)
+|+.++ |.+ ..|++++..+...|++|+|++ |+.+. ++|+.++.||+|
T Consensus 214 ~e~~~li~~g~i~gGm~~ki~ki~~~l~~l~~g~sv~I~~---~~~ll~elft~~g~GT~~ 271 (271)
T cd04236 214 ADLPSLSDAEWLSETEQNRIQDIATLLNALPSMSSAVITS---AETLLTELFSHKGSGTLF 271 (271)
T ss_pred HHHHHHHhCCEEcCCeeechHHHHHHHHhcccCCeEEEeC---hHHHHHHHhccCCCCCcC
Confidence 776643 333 348899999999999999998 77765 899999999975
No 71
>COG2054 Uncharacterized archaeal kinase related to aspartokinases, uridylate kinases [General function prediction only]
Probab=99.92 E-value=4.1e-24 Score=165.83 Aligned_cols=173 Identities=23% Similarity=0.333 Sum_probs=142.6
Q ss_pred eEEEEEcCChhhhhhhhh-hcCCCChhhhhHHHHHHHHHHHHHHHHHHHhCCCCceEecccccccccchhHHHHHHHHhh
Q 028621 3 QVAIVVGGGNIFRGASAA-GNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLE 81 (206)
Q Consensus 3 ~~iiVhGGG~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~~~~~~~l~~~l~ 81 (206)
++++|+|||-|++-++.. +++++++...|||++.++.+...+++++........+ .+| +...+
T Consensus 28 ~i~iVpGGg~FAd~VR~id~~~~lSdsasHwmAI~~Md~~G~~lad~~~~~~~~tv----------~ep------~~~i~ 91 (212)
T COG2054 28 SILIVPGGGIFADLVRKIDEEFGLSDSASHWMAITAMDQYGFYLADLASRFVTDTV----------TEP------EDGIK 91 (212)
T ss_pred eEEEecCchHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHhhhccccccee----------ech------hhccC
Confidence 489999999999988744 5689999999999999999999999986543332221 111 23344
Q ss_pred CCCEEEEeCC---------CCCCCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccccccHHHHhcCCcC
Q 028621 82 KGRVVIFAAG---------TGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLS 152 (206)
Q Consensus 82 ~g~ipvi~g~---------~g~~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~g~~ 152 (206)
.+..||+-|. -..|.++||++|.++|++++|.++++.|||||||+.+| +++++++|+.+|+.. |..
T Consensus 92 ~~~~aVLLPyrlLr~~DplpHSW~VTSDsis~~Ia~~~~~~~vv~aTDVdGI~~~~~----~~kLv~eI~A~dl~~-~~t 166 (212)
T COG2054 92 PDAKAVLLPYRLLRKTDPLPHSWEVTSDSISVWIAAKAGATEVVKATDVDGIYEEDP----KGKLVREIRASDLKT-GET 166 (212)
T ss_pred cccceEeeehHhhhcCCCCCcceeecccHHHHHHHHHcCCcEEEEEecCCcccccCC----cchhhhhhhHhhccc-Ccc
Confidence 5666676653 13578999999999999999999999999999999876 358999999999875 666
Q ss_pred cchHHHHHHHHhCCCcEEEEcCCCCchHHHHhcCCC-cceEEecC
Q 028621 153 VMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGER-VGTLIGGT 196 (206)
Q Consensus 153 ~~k~~a~~~a~~~gi~v~I~~g~~~~~l~~~l~g~~-~GT~i~~~ 196 (206)
.++..+...+.+.++.++++||..|+++.+++.|+. +||+|.+.
T Consensus 167 ~vD~~~P~Ll~k~~m~~~Vvng~~pervi~~lrGk~~v~T~Ivg~ 211 (212)
T COG2054 167 SVDPYLPKLLVKYKMNCRVVNGKEPERVILALRGKEVVGTLIVGG 211 (212)
T ss_pred cccchhhHHHHHcCCceEEECCCCHHHHHHHHhccccceEEEeCC
Confidence 789999999999999999999999999999999965 79999863
No 72
>TIGR01092 P5CS delta l-pyrroline-5-carboxylate synthetase. This protein contains a glutamate 5-kinase (ProB, EC 2.7.2.11) region followed by a gamma-glutamyl phosphate reductase (ProA, EC 1.2.1.41) region.
Probab=99.92 E-value=3.1e-24 Score=201.41 Aligned_cols=186 Identities=20% Similarity=0.303 Sum_probs=136.2
Q ss_pred ceEEE-EEcCChhhhhhhhhhcCCC----------ChhhhhHHHHHHHHHHHHHHH---HHHHhCCCCceEecccccccc
Q 028621 2 FQVAI-VVGGGNIFRGASAAGNSGL----------DRSSADYIGMLATVMNAIFLQ---ATMESIGIPTRVQTAFRMSEV 67 (206)
Q Consensus 2 ~~~ii-VhGGG~~~~~~~~~~~~~l----------~~~~~~~~~~~~~~~~~~ll~---~~l~~~gi~a~~l~~~~~~~v 67 (206)
+++|| +||++++ |+..++.+++ +....+.....+..++ .|+. ..++++++.+. ++...
T Consensus 46 ~~vilVsSGA~a~--G~~~~~~~~~~~~~~~~~~~~~~~~~~qa~aa~gq~-~L~~~y~~~f~~~~i~~a-----Q~Llt 117 (715)
T TIGR01092 46 REVILVTSGAVAF--GRQRLRHRILVNSSFADLQKPQPELDGKACAAVGQS-GLMALYETMFTQLDITAA-----QILVT 117 (715)
T ss_pred CEEEEEccchHHh--chHHhccchhccccccccCCCCchHHHHHHHHHHHH-HHHHHHHHHHHHcCCeeE-----EEEec
Confidence 46665 9999999 8876655542 2222344444444444 3333 34555566554 32222
Q ss_pred cch------h--HHHHHHHHhhCCCEEEEeCCC-----CC-------CCCCcHHHHHHHHHhcCCcEEEEeeccCccccC
Q 028621 68 AEP------Y--IRRRAVRHLEKGRVVIFAAGT-----GN-------PFFTTDTAAALRCAEINAEVVLKATNVDGVYDD 127 (206)
Q Consensus 68 ~~~------~--~~~~l~~~l~~g~ipvi~g~~-----g~-------~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~ 127 (206)
.+. + ..+.++.+|+.|.|||+++++ +. .++|||.+|+++|.+++||+|+++|||||||++
T Consensus 118 ~~d~~~~~~~~~~~~~l~~lL~~g~iPVin~nD~V~~~~~~~~~~~g~~~d~D~lAa~lA~~l~Ad~LiilTDVdGVy~~ 197 (715)
T TIGR01092 118 DLDFRDEQFRRQLNETVHELLRMNVVPVVNENDAVSTRAAPYSDSQGIFWDNDSLAALLALELKADLLILLSDVEGLYDG 197 (715)
T ss_pred hhhcccHHHHHHHHHHHHHHHHCCCEEEEcCCCcccccccccccccceecchHHHHHHHHHHcCCCEEEEEeCCCeeeCC
Confidence 211 1 257899999999999998741 11 168999999999999999999999999999999
Q ss_pred CCCCCCCCcccccccHHHHh-c--------CCcCcc--hHHHHHHHHhCCCcEEEEcCCCCchHHHHhcCCCcceEEecC
Q 028621 128 NPRRNPNARLLDTLTYQEVT-S--------KDLSVM--DMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGT 196 (206)
Q Consensus 128 dP~~~~~a~~i~~i~~~e~~-~--------~g~~~~--k~~a~~~a~~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~~~ 196 (206)
||+ +|++++|++++..+.. + .++++| |++++..+.++|++++|+|+++|++|.++++|+..||+|.++
T Consensus 198 dP~-~~~a~~I~~i~~~~~~~~i~~~~~~~~~tGGM~~Kl~aa~~a~~~gi~v~I~~g~~~~~l~~~l~g~~~GT~~~~~ 276 (715)
T TIGR01092 198 PPS-DDDSKLIDTFYKEKHQGEITFGTKSRLGRGGMTAKVKAAVWAAYGGTPVIIASGTAPKNITKVVEGKKVGTLFHED 276 (715)
T ss_pred CCC-CCCCeEeeeecccchhhhhccCcccccCCCCchHHHHHHHHHHHCCCeEEEeCCCCcchHHHHhcCCCCceEeccc
Confidence 996 6899999988764322 1 124555 999999999999999999999999999999999999999774
No 73
>PRK12352 putative carbamate kinase; Reviewed
Probab=99.91 E-value=9.7e-23 Score=174.15 Aligned_cols=185 Identities=19% Similarity=0.220 Sum_probs=133.5
Q ss_pred ceEEEEEcCChhhhhhhhhhcCCCCh-------hhhh-----HHHHHHHHHHHHHHHHHHHhCCCCc-------eEeccc
Q 028621 2 FQVAIVVGGGNIFRGASAAGNSGLDR-------SSAD-----YIGMLATVMNAIFLQATMESIGIPT-------RVQTAF 62 (206)
Q Consensus 2 ~~~iiVhGGG~~~~~~~~~~~~~l~~-------~~~~-----~~~~~~~~~~~~ll~~~l~~~gi~a-------~~l~~~ 62 (206)
+++|||||+|++++... .+.++.. ...+ ..+.++..+++.|... |.++|..+ +.+++.
T Consensus 45 ~~lVivHG~GPqI~~~l--~~~~~~~~~~g~rvt~~~~~v~~~~g~i~~~i~~~L~~~-l~~~g~~~~~~vvt~v~vs~~ 121 (316)
T PRK12352 45 YDIVLTHGNGPQVGLDL--RRAEIAHEREGLPLTPLANCVADTQGGIGYLIQQALNNR-LARHGEKKAVTVVTQVEVDKN 121 (316)
T ss_pred CeEEEEeCCCHHHHHHH--HHcCcccccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH-HHhcCCCCeeEEEEEEEECCC
Confidence 78999999999998754 3333332 2233 1233456888888775 66677554 445643
Q ss_pred cc----------------------------ccccc-----------h---h--HHHHHHHHhhCCCEEEEe---------
Q 028621 63 RM----------------------------SEVAE-----------P---Y--IRRRAVRHLEKGRVVIFA--------- 89 (206)
Q Consensus 63 ~~----------------------------~~v~~-----------~---~--~~~~l~~~l~~g~ipvi~--------- 89 (206)
|. .++.+ | . ..+.++.+|++|+|+|.+
T Consensus 122 D~~f~~~~kpiG~~y~~~~a~~~~~~~~~~~~~~d~g~G~rrvv~sp~pv~~V~~~~I~~ll~~g~iVi~~ggggiPv~~ 201 (316)
T PRK12352 122 DPGFAHPTKPIGAFFSESQRDELQKANPDWRFVEDAGRGYRRVVASPEPKRIVEAPAIKALIQQGFVVIGAGGGGIPVVR 201 (316)
T ss_pred CccccCCcccccCcccHHHHHHHhhhcCCceEeecCCCCeEEecCCCCCceEEcHHHHHHHHHCCCEEEecCCCCCCEEe
Confidence 32 11111 0 1 147889999999995554
Q ss_pred CCCCC----C-CCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccccccHHHHhcC--------CcCcchH
Q 028621 90 AGTGN----P-FFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK--------DLSVMDM 156 (206)
Q Consensus 90 g~~g~----~-~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~--------g~~~~k~ 156 (206)
+..|. . +++.|..|+.+|.+|+||+|+|+|||+|||.+++ +|++++|++++.+|+.++ |.+..|+
T Consensus 202 ~~~g~~~n~~~nInaD~aAa~iA~aL~AdkLI~LTDV~GV~~d~~--~~~~~li~~lt~~e~~~li~~g~i~~GgM~pKl 279 (316)
T PRK12352 202 TDAGDYQSVDAVIDKDLSTALLAREIHADILVITTGVEKVCIHFG--KPQQQALDRVDIATMTRYMQEGHFPPGSMLPKI 279 (316)
T ss_pred CCCCCccCceeeecHHHHHHHHHHHhCCCEEEEEeCchhhccCCC--CCCcccccccCHHHHHHHHhcCCcCCCCCHHHH
Confidence 22222 1 3789999999999999999999999999998765 356789999999887753 2334499
Q ss_pred HHHHHHHhCCC-cEEEEcCCCCchHHHHhcCCCcceEEec
Q 028621 157 TAITLCQENNI-PVVVFNLNQPGNIAKAIQGERVGTLIGG 195 (206)
Q Consensus 157 ~a~~~a~~~gi-~v~I~~g~~~~~l~~~l~g~~~GT~i~~ 195 (206)
++|..+++.|+ +++|++ ++.+.++|+|+ .||+|..
T Consensus 280 ~aA~~al~~Gv~~v~I~~---~~~i~~al~g~-~GT~I~~ 315 (316)
T PRK12352 280 IASLTFLEQGGKEVIITT---PECLPAALRGE-TGTHIIK 315 (316)
T ss_pred HHHHHHHHhCCCeEEEcc---hHHHHHHHcCC-CCeEEEe
Confidence 99999999888 599996 88899999998 8999964
No 74
>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional
Probab=99.90 E-value=2.2e-23 Score=199.35 Aligned_cols=163 Identities=23% Similarity=0.281 Sum_probs=136.5
Q ss_pred ChhhhhHHHHHHHHHHHHHHHHHHHhCCCCceEecccccccccc--------hh--------H-HHHHHHHhhCC-CEEE
Q 028621 26 DRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAE--------PY--------I-RRRAVRHLEKG-RVVI 87 (206)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~--------~~--------~-~~~l~~~l~~g-~ipv 87 (206)
+++..|.+.+.||++|+.+++.+|++.|+++..++++++..++. .+ . ...++.+++.+ .+||
T Consensus 115 ~~~~~d~i~s~GE~lSa~lla~~L~~~Gi~a~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~V 194 (861)
T PRK08961 115 SLRWQAEVLGQGELLSTTLGAAYLEASGLDMGWLDAREWLTALPQPNQSEWSQYLSVSCQWQSDPALRERFAAQPAQVLI 194 (861)
T ss_pred ChhhhheEEEehHHHHHHHHHHHHHhCCCCcEEEcHHHhEeecCccccccccccccceecHhhHHHHHHHHhccCCeEEE
Confidence 44455777789999999999999999999999999988754433 01 1 12344445544 5999
Q ss_pred EeCCCC-----C----CCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccccccHHHHhcC---CcCcch
Q 028621 88 FAAGTG-----N----PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMD 155 (206)
Q Consensus 88 i~g~~g-----~----~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~---g~~~~k 155 (206)
++||.| . .+++||++|+.+|..|+|+++++||||||||++||+.+|++++|++++++|+.++ |.+++|
T Consensus 195 v~Gf~g~~~~g~~ttLgrggsD~~A~~iA~~l~a~~~~i~tdv~Gv~t~dP~~~~~a~~i~~ls~~e~~el~~~g~~v~~ 274 (861)
T PRK08961 195 TQGFIARNADGGTALLGRGGSDTSAAYFAAKLGASRVEIWTDVPGMFSANPKEVPDARLLTRLDYDEAQEIATTGAKVLH 274 (861)
T ss_pred eCCcceeCCCCCEEEEeCCchHHHHHHHHHHcCCCEEEEEeCCCccccCCCCCCCCceEecccCHHHHHHHHHCCCeEEC
Confidence 999844 1 3699999999999999999999999999999999999999999999999998865 788899
Q ss_pred HHHHHHHHhCCCcEEEEcCCCCchHHHHhcCCCcceEEecCC
Q 028621 156 MTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGTW 197 (206)
Q Consensus 156 ~~a~~~a~~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~~~~ 197 (206)
++|+.+|.+++||++|.|+++|+ ..||+|..+.
T Consensus 275 ~~a~~~a~~~~i~i~v~~~~~~~---------~~gT~I~~~~ 307 (861)
T PRK08961 275 PRSIKPCRDAGIPMAILDTERPD---------LSGTSIDGDA 307 (861)
T ss_pred HHHHHHHHHCCCCEEEEeCCCCC---------CCccEEeCCC
Confidence 99999999999999999999885 5799998653
No 75
>TIGR00746 arcC carbamate kinase. The seed alignment for this model includes experimentally confirmed examples from a set of phylogenetically distinct species. In a neighbor-joining tree constructed from an alignment of candidate carbamate kinases and several acetylglutamate kinases, the latter group forms a clear outgroup which roots the tree of carbamate kinase-like proteins. This analysis suggests that in E. coli, the ArcC paralog YqeA may be a second isozyme, while the paralog YahI branches as an outlier and is less likely to be an authentic carbamate kinase. The homolog from Mycoplasma pneumoniae likewise branches outside the set containing known carbamate kinases and also scores below the trusted cutoff.
Probab=99.90 E-value=2.5e-22 Score=171.32 Aligned_cols=116 Identities=25% Similarity=0.382 Sum_probs=94.2
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCC-------------CCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccc
Q 028621 73 RRRAVRHLEKGRVVIFAAGTGNP-------------FFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLD 139 (206)
Q Consensus 73 ~~~l~~~l~~g~ipvi~g~~g~~-------------~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~ 139 (206)
.+.++.+|++|.++|.+|..|.| ++|+|.+|+++|.+++||+|+++|||||||+++ ..|++++|+
T Consensus 172 ~~~I~~LL~~G~iVI~~ggggiPvi~e~~~~~g~e~~id~D~lAa~lA~~l~AD~LIiLTDVdGVy~~~--~~p~a~~i~ 249 (310)
T TIGR00746 172 AETIKTLVENGVIVISSGGGGVPVVLEGAELKGVEAVIDKDLASEKLAEEVNADILVILTDVDAVYINY--GKPDEKALR 249 (310)
T ss_pred HHHHHHHHHCCCEEEeCCCCCcCEEecCCeEEeeEecCCHHHHHHHHHHHhCCCEEEEEeCCCceeCCC--CCCCCcCCc
Confidence 36888999999865555543332 469999999999999999999999999999974 357889999
Q ss_pred cccHHHHhcC------CcCcc--hHHHHHHHHhC-CCcEEEEcCCCCchHHHHhcCCCcceEEe
Q 028621 140 TLTYQEVTSK------DLSVM--DMTAITLCQEN-NIPVVVFNLNQPGNIAKAIQGERVGTLIG 194 (206)
Q Consensus 140 ~i~~~e~~~~------g~~~~--k~~a~~~a~~~-gi~v~I~~g~~~~~l~~~l~g~~~GT~i~ 194 (206)
+++.+|+.++ +.++| |+++|..+.+. +.+++|++ ++++.++++|+ .||+|.
T Consensus 250 ~it~~e~~~~~~~g~~~tGgM~~Kl~AA~~~~~~g~~~v~I~~---~~~i~~~l~G~-~GT~I~ 309 (310)
T TIGR00746 250 EVTVEELEDYYKAGHFAAGSMGPKVEAAIEFVESGGKRAIITS---LENAVEALEGK-AGTRVT 309 (310)
T ss_pred CcCHHHHHHHHhcCCcCCCCcHHHHHHHHHHHHhCCCeEEEec---hHHHHHHHCCC-CCcEEe
Confidence 9999887643 23445 89999766665 56899997 78999999999 999986
No 76
>PLN02825 amino-acid N-acetyltransferase
Probab=99.89 E-value=2e-22 Score=181.83 Aligned_cols=191 Identities=14% Similarity=0.150 Sum_probs=145.2
Q ss_pred ceEEEEEcCChhhhhhhhhhcCCCChhh-----------hhHHHHHHHHHHHHHHHHH--------HHhCCCCc----eE
Q 028621 2 FQVAIVVGGGNIFRGASAAGNSGLDRSS-----------ADYIGMLATVMNAIFLQAT--------MESIGIPT----RV 58 (206)
Q Consensus 2 ~~~iiVhGGG~~~~~~~~~~~~~l~~~~-----------~~~~~~~~~~~~~~ll~~~--------l~~~gi~a----~~ 58 (206)
+++|||||||++++... ++.|+++++ ++....++..+|..+.+.+ |+++|+++ ..
T Consensus 49 i~~VlVHGggpqI~~~l--~~~gi~~~f~~G~RVTd~~~L~~~~~~~G~v~~~i~a~Ls~~~~v~~l~~~G~~a~~~~~g 126 (515)
T PLN02825 49 IKFVLVPGTHVQIDKLL--AERGREPKYVGAYRITDSAALQASMEAAGKIRVMIEAKLSPGPSIPNLRRHGDNSRWHEVG 126 (515)
T ss_pred CCEEEEcCCCHHHHHHH--HHcCCCceeeCCcccCCHHHHHHHHHHHHHHHHHHHHhhccccchhHHHhcCCCCccccCc
Confidence 58999999999999854 556766544 3444557778999998753 67889988 55
Q ss_pred eccccc----------------ccccchh--HHHHHHHHhhCCCEEEEeCC----CCCC-CCCcHHHHHHHHHhcCCcEE
Q 028621 59 QTAFRM----------------SEVAEPY--IRRRAVRHLEKGRVVIFAAG----TGNP-FFTTDTAAALRCAEINAEVV 115 (206)
Q Consensus 59 l~~~~~----------------~~v~~~~--~~~~l~~~l~~g~ipvi~g~----~g~~-~~~sD~~A~~lA~~l~A~~l 115 (206)
+++.+. +++++.. ..+.|+.+|++|.|||++|. +|+. ++++|..|+.+|.+|+|++|
T Consensus 127 l~~~~Gn~v~a~~~gv~dgvD~g~vG~V~~Vd~~~i~~~L~~g~Ipvisplg~s~~Ge~~NinaD~vA~avA~aL~A~KL 206 (515)
T PLN02825 127 VSVASGNFLAAKRRGVVNGVDFGATGEVKKIDVSRIKERLDSNCIVLLSNLGYSSSGEVLNCNTYEVATACALAIGADKL 206 (515)
T ss_pred eEeccCcEEEEEECCCCcCccccceeeEEEEcHHHHHHHHhCCCeEEECCceECCCCCEEeeCHHHHHHHHHHHcCCCeE
Confidence 655442 2222211 25889999999999999995 4554 49999999999999999999
Q ss_pred EEeeccCccccCCCCCCCCCcccccccHHHHhcC---C------------------------c-----------------
Q 028621 116 LKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---D------------------------L----------------- 151 (206)
Q Consensus 116 i~ltdV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~---g------------------------~----------------- 151 (206)
||+||++ +++.+ .++|++++.+|+.++ + .
T Consensus 207 I~ltd~~-~~~~~------g~li~~l~~~e~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (515)
T PLN02825 207 ICIVDGP-ILDEN------GRLIRFMTLEEADMLIRKRAKQSEIAANYVKAVGGEDYSYSLGLDSVNTTPFNNNGRGFWG 279 (515)
T ss_pred EEEeCcc-eecCC------CCCcCcCCHHHHHHHHHhhhhcchhhhhhhhhccccccccccccccccccccccccccccc
Confidence 9999977 55432 467888887665422 0 0
Q ss_pred ---------------C-------------------cc-----hHHHHHHHHhCCCc-EEEEcCCCCchHH-HHhcCCCcc
Q 028621 152 ---------------S-------------------VM-----DMTAITLCQENNIP-VVVFNLNQPGNIA-KAIQGERVG 190 (206)
Q Consensus 152 ---------------~-------------------~~-----k~~a~~~a~~~gi~-v~I~~g~~~~~l~-~~l~g~~~G 190 (206)
. .. ++.+|..|++.|++ +|++++..++.|+ ++|+.+++|
T Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~a~~~gv~r~hl~~~~~~gall~elft~dg~g 359 (515)
T PLN02825 280 SGSATDSFQNGVGFDNGNGLSGEQGFAIGGEERLSRLNGYLSELAAAAFVCRGGVQRVHLLDGTIEGVLLLELFTRDGMG 359 (515)
T ss_pred cccccccccccccccCcccccccccccccchhhchhhhhHHHHHHHHHHHHHcCCCeEEeccCCCCchHHHHhhccCCce
Confidence 0 00 37888999999996 9999999999986 899999999
Q ss_pred eEEecCCCCcc
Q 028621 191 TLIGGTWNSTV 201 (206)
Q Consensus 191 T~i~~~~~~~~ 201 (206)
|+|..+.++..
T Consensus 360 t~i~~~~~e~I 370 (515)
T PLN02825 360 TMIASDMYEGT 370 (515)
T ss_pred eEeccChHhhh
Confidence 99998877654
No 77
>PRK12454 carbamate kinase-like carbamoyl phosphate synthetase; Reviewed
Probab=99.89 E-value=9.1e-22 Score=167.22 Aligned_cols=117 Identities=26% Similarity=0.359 Sum_probs=95.6
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCC-------------CCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccc
Q 028621 73 RRRAVRHLEKGRVVIFAAGTGNP-------------FFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLD 139 (206)
Q Consensus 73 ~~~l~~~l~~g~ipvi~g~~g~~-------------~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~ 139 (206)
.+.++.+|++|.|||++|+.|.| ++|+|.+|+++|.+|+||+|+|+|||||||++ + ..|++++|+
T Consensus 175 ~~aI~~LLe~G~IvI~~GgGGiPV~~~~g~~~gveaViD~D~aAa~LA~~L~AD~LIiLTdVdGVy~~-~-~~p~~~~i~ 252 (313)
T PRK12454 175 IEVIKALVENGFIVIASGGGGIPVIEEDGELKGVEAVIDKDLASELLAEELNADIFIILTDVEKVYLN-Y-GKPDQKPLD 252 (313)
T ss_pred HHHHHHHHHCCCEEEEeCCCccceEcCCCcEEeeeeecCccHHHHHHHHHcCCCEEEEEeCCceeeCC-C-CCCCCeEcc
Confidence 47888999999999999764433 35689999999999999999999999999986 3 257889999
Q ss_pred cccHHHHhcC------CcCcc--hHHHHHHHHhCC-CcEEEEcCCCCchHHHHhcCCCcceEEec
Q 028621 140 TLTYQEVTSK------DLSVM--DMTAITLCQENN-IPVVVFNLNQPGNIAKAIQGERVGTLIGG 195 (206)
Q Consensus 140 ~i~~~e~~~~------g~~~~--k~~a~~~a~~~g-i~v~I~~g~~~~~l~~~l~g~~~GT~i~~ 195 (206)
+++.+|+.++ ..+.| |+++|..+.+.+ .+++|++ ++++.++++|+ .||+|.+
T Consensus 253 ~It~~e~~~~i~~g~~~~GgM~pKv~AA~~~v~~gg~~a~I~~---~~~i~~aL~G~-~GT~I~~ 313 (313)
T PRK12454 253 KVTVEEAKKYYEEGHFKAGSMGPKILAAIRFVENGGKRAIIAS---LEKAVEALEGK-TGTRIIP 313 (313)
T ss_pred ccCHHHHHHHHhcCCcCCCChHHHHHHHHHHHHcCCCeEEECc---hHHHHHHHCCC-CCeEeCC
Confidence 9999887642 23444 899997777665 5799885 67899999998 7999964
No 78
>PLN02418 delta-1-pyrroline-5-carboxylate synthase
Probab=99.88 E-value=3e-21 Score=181.25 Aligned_cols=163 Identities=21% Similarity=0.328 Sum_probs=130.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCCceEe--cccccccccchh--HHHHHHHHhhCCCEEEEeCCCC-----C-------C
Q 028621 32 YIGMLATVMNAIFLQATMESIGIPTRVQ--TAFRMSEVAEPY--IRRRAVRHLEKGRVVIFAAGTG-----N-------P 95 (206)
Q Consensus 32 ~~~~~~~~~~~~ll~~~l~~~gi~a~~l--~~~~~~~v~~~~--~~~~l~~~l~~g~ipvi~g~~g-----~-------~ 95 (206)
.+...|+.++..+++.+|+++|+++..+ +..++.. ...+ ..+.++.+|+.|.|||+++++. . .
T Consensus 95 a~aa~Gq~~l~~~~~~~f~~~g~~~~qillT~~~~~~-~~~~~~~~~~l~~ll~~g~iPVv~~nd~v~~~~~~~~~~~~~ 173 (718)
T PLN02418 95 ACAAVGQSELMALYDTLFSQLDVTASQLLVTDSDFRD-PDFRKQLSETVESLLDLRVIPIFNENDAVSTRRAPYEDSSGI 173 (718)
T ss_pred HHHHhhHHHHHHHHHHHHHHcCCeEEEEEecHhHhcc-hhHhHhHHHHHHHHHHCCCEEEEcCCCCccccccccccccCe
Confidence 4467899999999999999999977642 2111110 0111 2578899999999999998521 1 2
Q ss_pred CCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccccccHHHHh---c------CCcCcc--hHHHHHHHHh
Q 028621 96 FFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVT---S------KDLSVM--DMTAITLCQE 164 (206)
Q Consensus 96 ~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~~i~~~e~~---~------~g~~~~--k~~a~~~a~~ 164 (206)
+++||++|+++|.+++|++|+|+|||||||++||+ .|++++|++++..+.. . .++++| |++++..+.+
T Consensus 174 ~~d~D~~A~~lA~~l~Ad~li~~TdVdGvy~~~p~-~~~a~~i~~i~~~~~~~~i~~~~~s~~~tGGM~~Kl~Aa~~a~~ 252 (718)
T PLN02418 174 FWDNDSLAALLALELKADLLILLSDVEGLYTGPPS-DPSSKLIHTYIKEKHQDEITFGEKSRVGRGGMTAKVKAAVNAAS 252 (718)
T ss_pred ecCcHHHHHHHHHHcCCCEEEEeecCCeeecCCCC-CCCceEcceecccchhhhhhcccccccCCCCcHHHHHHHHHHHH
Confidence 45899999999999999999999999999999997 5889999998754321 1 134555 9999999999
Q ss_pred CCCcEEEEcCCCCchHHHHhcCCCcceEEecC
Q 028621 165 NNIPVVVFNLNQPGNIAKAIQGERVGTLIGGT 196 (206)
Q Consensus 165 ~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~~~ 196 (206)
+|++++|+||++|++|.++++|+..||+|.++
T Consensus 253 ~Gi~v~I~~g~~~~~l~~~l~g~~~GT~i~~~ 284 (718)
T PLN02418 253 AGIPVVITSGYALDNIRKVLRGERVGTLFHQD 284 (718)
T ss_pred CCCcEEEeCCCCcchHHHHhcCCCCceEeccc
Confidence 99999999999999999999999999999874
No 79
>KOG0456 consensus Aspartate kinase [Amino acid transport and metabolism]
Probab=99.87 E-value=6e-22 Score=169.43 Aligned_cols=166 Identities=24% Similarity=0.325 Sum_probs=140.4
Q ss_pred CCChhhhhHHHHHHHHHHHHHHHHHHHhCCCCceEecccccccccch-h----H----HHHHHHHh-----hCCCEEEEe
Q 028621 24 GLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEP-Y----I----RRRAVRHL-----EKGRVVIFA 89 (206)
Q Consensus 24 ~l~~~~~~~~~~~~~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~~-~----~----~~~l~~~l-----~~g~ipvi~ 89 (206)
.++.+..|++..+++.+|.++++++|+..|+++..++.++++.++.. + + ...+.+++ ..+.+||+.
T Consensus 186 Elt~RTrD~lvs~GE~lS~rf~aA~lnd~G~kar~~D~~~I~~~~~d~~t~~d~~~a~~~av~k~~~~~~aken~VPVvT 265 (559)
T KOG0456|consen 186 ELTLRTRDYLVSFGECLSTRFFAAYLNDIGHKARQYDAFEIGFITTDDFTNDDILEATYPAVSKLLSGDWAKENAVPVVT 265 (559)
T ss_pred hcchhhhhHhhhhhhHHHHHHHHHHHHhcCccceeechhheeccccccccchhHHHHHHHHHHHhcccccccCCccceEe
Confidence 34555668899999999999999999999999999999988766532 1 1 11111222 247899999
Q ss_pred CCCCC----------CCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccccccHHHHhcC---CcCcchH
Q 028621 90 AGTGN----------PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDM 156 (206)
Q Consensus 90 g~~g~----------~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~---g~~~~k~ 156 (206)
||.|. .++.+|.+|+.+|.+|++|.+-.|+|||||+++||++.|.|+++|.++++|+.++ |+.++|+
T Consensus 266 Gf~Gk~~~tg~lt~lGRG~sDl~At~i~~al~~~EiQVWKdVDGv~T~DP~~~p~Ar~vp~lT~dEAaELaYfGaqVlHP 345 (559)
T KOG0456|consen 266 GFLGKGWPTGALTTLGRGGSDLTATTIGKALGLDEIQVWKDVDGVLTCDPRIYPGARLVPYLTFDEAAELAYFGAQVLHP 345 (559)
T ss_pred eccccCccccceecccCCchhhHHHHHHHHcCchhhhhhhhcCceEecCCccCCCccccCccCHHHHHHHHhhhhhhccc
Confidence 98552 3688999999999999999999999999999999999999999999999998876 8889999
Q ss_pred HHHHHHHhCCCcEEEEcCCCCchHHHHhcCCCcceEEecCCC
Q 028621 157 TAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGTWN 198 (206)
Q Consensus 157 ~a~~~a~~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~~~~~ 198 (206)
.+.+++.+..||++|.|..+|- ..||.|.++..
T Consensus 346 ~sM~~~~~~~IPvRvKN~~NP~---------~~GTvI~~d~~ 378 (559)
T KOG0456|consen 346 FSMRPAREGRIPVRVKNSYNPT---------APGTVITPDRD 378 (559)
T ss_pred cccchhhccCcceEeecCCCCC---------CCceEeccchh
Confidence 9999999999999999998886 68999999743
No 80
>PRK12686 carbamate kinase; Reviewed
Probab=99.87 E-value=7.2e-21 Score=161.93 Aligned_cols=116 Identities=22% Similarity=0.312 Sum_probs=95.5
Q ss_pred HHHHHHHhhCCCEEEEeCCCCC-------------CCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccc
Q 028621 73 RRRAVRHLEKGRVVIFAAGTGN-------------PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLD 139 (206)
Q Consensus 73 ~~~l~~~l~~g~ipvi~g~~g~-------------~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~ 139 (206)
.+.++.+|++|.|||.+|..|. .++|+|.+|+.||.+|+||+|+|+|||||||++ |+ .|++++|+
T Consensus 173 ~~~I~~Ll~~G~IpI~~GgggIPVv~~~~~~~gv~avid~D~~Aa~LA~~L~Ad~LIiLTDVdGVy~~-~~-~p~ak~I~ 250 (312)
T PRK12686 173 HDTIRTLVDGGNIVIACGGGGIPVIRDDNTLKGVEAVIDKDFASEKLAEQIDADLLIILTGVENVFIN-FN-KPNQQKLD 250 (312)
T ss_pred HHHHHHHHHCCCEEEEeCCCCCCeEecCCcEEeeecccCccHHHHHHHHHcCCCEEEEEeCchhhccC-CC-CCCCeECC
Confidence 5789999999999988754221 257999999999999999999999999999995 43 47889999
Q ss_pred cccHHHHhcC------CcCcc--hHHHHHHHHhC--CCcEEEEcCCCCchHHHHhcCCCcceEEe
Q 028621 140 TLTYQEVTSK------DLSVM--DMTAITLCQEN--NIPVVVFNLNQPGNIAKAIQGERVGTLIG 194 (206)
Q Consensus 140 ~i~~~e~~~~------g~~~~--k~~a~~~a~~~--gi~v~I~~g~~~~~l~~~l~g~~~GT~i~ 194 (206)
+++.+|+.++ ++++| |++||..+.+. |.+++|++ ++.+.+++.|+ .||+|.
T Consensus 251 ~I~~~e~~~li~~g~~~tGGM~pKveAA~~av~~g~g~~viI~~---~~~i~~aL~G~-~GT~I~ 311 (312)
T PRK12686 251 DITVAEAKQYIAEGQFAPGSMLPKVEAAIDFVESGEGKKAIITS---LEQAKEALAGN-AGTHIT 311 (312)
T ss_pred ccCHHHHHHHhhCCCccCCCcHHHHHHHHHHHHhCCCCEEEEeC---chHHHHHhCCC-CCeEEe
Confidence 9999887643 23445 99999998865 45788887 78888999998 799985
No 81
>PRK12354 carbamate kinase; Reviewed
Probab=99.86 E-value=1.2e-20 Score=160.02 Aligned_cols=120 Identities=28% Similarity=0.277 Sum_probs=95.5
Q ss_pred HHHHHHHhhCCCEEEEeCCCCC--------------CCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCccc
Q 028621 73 RRRAVRHLEKGRVVIFAAGTGN--------------PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLL 138 (206)
Q Consensus 73 ~~~l~~~l~~g~ipvi~g~~g~--------------~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i 138 (206)
.+.++.+|++|.|||.+|+.|. .++|+|.+|+.||.+++||+|+|+|||||||++++ .|++++|
T Consensus 165 ~~~I~~Ll~~g~ivIa~GGGGIPV~~~~~~~~~gv~aViD~D~~Aa~LA~~l~Ad~LiiLTdVdGVy~~~~--~p~~k~i 242 (307)
T PRK12354 165 IRPIRWLLEKGHLVICAGGGGIPVVYDADGKLHGVEAVIDKDLAAALLAEQLDADLLLILTDVDAVYLDWG--KPTQRAI 242 (307)
T ss_pred HHHHHHHHHCCCEEEEeCCCccCeEecCCCceeeeeecCCccHHHHHHHHHcCCCEEEEEeCCcceecCCC--CCCCeEC
Confidence 5789999999998776543211 15789999999999999999999999999999753 5788999
Q ss_pred ccccHHHHhcC----CcCcchHHHHHHHHhCCC-cEEEEcCCCCchHHHHhcCCCcceEEecCCC
Q 028621 139 DTLTYQEVTSK----DLSVMDMTAITLCQENNI-PVVVFNLNQPGNIAKAIQGERVGTLIGGTWN 198 (206)
Q Consensus 139 ~~i~~~e~~~~----g~~~~k~~a~~~a~~~gi-~v~I~~g~~~~~l~~~l~g~~~GT~i~~~~~ 198 (206)
++++.+|+.++ |++..|++||..+.+.+. +++|. .++.+.++|+|+ .||+|.++..
T Consensus 243 ~~it~~e~~~~~f~~GgM~pKV~AA~~~~~~gg~~viI~---~~~~l~~al~G~-~GT~I~~~~~ 303 (307)
T PRK12354 243 AQATPDELRELGFAAGSMGPKVEAACEFVRATGKIAGIG---SLEDIQAILAGE-AGTRISPETA 303 (307)
T ss_pred CCCCHHHHHhhCCCcCChHHHHHHHHHHHHhCCCEEEEC---CHHHHHHHHCCC-CceEEecCCC
Confidence 99999888754 334449999977666544 68775 367888999987 7999987543
No 82
>PRK04531 acetylglutamate kinase; Provisional
Probab=99.86 E-value=1.1e-20 Score=166.41 Aligned_cols=159 Identities=15% Similarity=0.237 Sum_probs=118.7
Q ss_pred ceEEEEEcCChhhhhhhhhhcCCCChhhh-----------hHHHHHHHHHHHHHHHHHHHhCCCCceEecccccccccch
Q 028621 2 FQVAIVVGGGNIFRGASAAGNSGLDRSSA-----------DYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEP 70 (206)
Q Consensus 2 ~~~iiVhGGG~~~~~~~~~~~~~l~~~~~-----------~~~~~~~~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~~ 70 (206)
.++|||||||++++... ++.|+++++. +.+.+....+|..++..
T Consensus 67 ~~~VlVHGggpqI~~~l--~~~gie~~~v~G~RVTd~~tl~vv~~~l~~vn~~lv~~----------------------- 121 (398)
T PRK04531 67 LTPIVVHGAGPQLDAEL--DAAGIEKETVNGLRVTSPEALAIVRKVFQRSNLDLVEA----------------------- 121 (398)
T ss_pred CcEEEEECCCHHHHHHH--HHcCCCcEEECCEecCCHHHHHHHHHHHHHHHHHHHHH-----------------------
Confidence 47899999999999854 5567776542 22222222444443332
Q ss_pred hHHHHHHHHhhCCCEEEEeCC----CCCC-CCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccccccH-H
Q 028621 71 YIRRRAVRHLEKGRVVIFAAG----TGNP-FFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTY-Q 144 (206)
Q Consensus 71 ~~~~~l~~~l~~g~ipvi~g~----~g~~-~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~~i~~-~ 144 (206)
++.+|+.|.|||++|. .|+. ++++|.+|+.+|.+|+|++|+|+|||+|||+.+ +++|++++. +
T Consensus 122 -----I~~~L~~g~IPVlsplg~~~~G~~~NvnaD~vA~~LA~aL~a~KLIfltdv~GV~d~~------g~~i~~i~~~~ 190 (398)
T PRK04531 122 -----VESSLRAGSIPVIASLGETPSGQILNINADVAANELVSALQPYKIIFLTGTGGLLDAD------GKLISSINLST 190 (398)
T ss_pred -----HHHHHHCCCEEEEeCcEECCCCcEEEECHHHHHHHHHHHcCCCEEEEEECCCCccCCC------CCCcccCCHHH
Confidence 5688999999999885 2443 589999999999999999999999999999743 578899986 3
Q ss_pred HHhcC-------CcCcchHHHHHHHHhCCCcEEEEcCCCCchHH-HHhcCCCcceEEecC
Q 028621 145 EVTSK-------DLSVMDMTAITLCQENNIPVVVFNLNQPGNIA-KAIQGERVGTLIGGT 196 (206)
Q Consensus 145 e~~~~-------g~~~~k~~a~~~a~~~gi~v~I~~g~~~~~l~-~~l~g~~~GT~i~~~ 196 (206)
+...+ |.+..|++++..+.+...++++++...|++|. ++++.++.||+|+..
T Consensus 191 e~~~l~~~~~vtgGM~~KL~~a~~al~~~~~~~~V~i~~~~~Ll~eLft~~G~GT~I~~g 250 (398)
T PRK04531 191 EYDHLMQQPWINGGMKLKLEQIKELLDRLPLESSVSITSPSDLAKELFTHKGSGTLVRRG 250 (398)
T ss_pred HHHHHHhcCCCCccHHHHHHHHHHHHhCCCcEEEEEecCCCHHHHHHccCCCCCeEEecC
Confidence 44432 23334999999988654468888888899987 678888899999874
No 83
>KOG1154 consensus Gamma-glutamyl kinase [Amino acid transport and metabolism]
Probab=99.85 E-value=2.1e-20 Score=150.55 Aligned_cols=148 Identities=22% Similarity=0.361 Sum_probs=116.5
Q ss_pred HHHHHhCCCCceE--ecccccccccch-h--HHHHHHHHhhCCCEEEEeCCC-----CCCCCC---cHHHHHHHHHhcCC
Q 028621 46 QATMESIGIPTRV--QTAFRMSEVAEP-Y--IRRRAVRHLEKGRVVIFAAGT-----GNPFFT---TDTAAALRCAEINA 112 (206)
Q Consensus 46 ~~~l~~~gi~a~~--l~~~~~~~v~~~-~--~~~~l~~~l~~g~ipvi~g~~-----g~~~~~---sD~~A~~lA~~l~A 112 (206)
..++.++|+.+.. ++-.|+ .++. + ...++.++|..|.|||++.++ ..++.+ ||++|+.+|.+++|
T Consensus 105 e~lF~Qy~~~iAQvLvT~~Di--~d~~~r~Nl~~Ti~eLL~m~viPIvNeNDavs~~~~~~~D~~dNDsLsA~laaei~A 182 (285)
T KOG1154|consen 105 ETLFTQYGITIAQVLVTRNDI--LDEQQRKNLQNTISELLSMNVIPIVNENDAVSPREIPFGDSSDNDSLAAILAAEIKA 182 (285)
T ss_pred HHHHHHhccchheeeecCcch--hhHHHHHHHHHHHHHHHhCCceeeecCCCccCCcccccCCCCcccHHHHHHHHHhcc
Confidence 4457778877654 222222 1111 1 247899999999999999863 245666 99999999999999
Q ss_pred cEEEEeeccCccccCCCCCCCCCcccccccHHHHh---------cCCcCcc--hHHHHHHHHhCCCcEEEEcCCCCchHH
Q 028621 113 EVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVT---------SKDLSVM--DMTAITLCQENNIPVVVFNLNQPGNIA 181 (206)
Q Consensus 113 ~~li~ltdV~Gv~~~dP~~~~~a~~i~~i~~~e~~---------~~g~~~~--k~~a~~~a~~~gi~v~I~~g~~~~~l~ 181 (206)
|.|+++|||||+|+.+|... ..++|+..+..+-. +.|+++| |+.||..|...|++++|++|..|++|.
T Consensus 183 DlLilLsDVdglYt~PPd~~-~~~li~~~~~~~~~v~~tfG~~SkvGtGGM~tKv~AA~~A~~~Gv~viI~~g~~p~~I~ 261 (285)
T KOG1154|consen 183 DLLILLSDVDGLYTGPPDAD-PSKLIHTFSPGDPQVSTTFGSKSKVGTGGMETKVKAAVNALNAGVSVIITNGDAPENIT 261 (285)
T ss_pred CEEEEEecccccccCCCCCC-cceeeeeeccCCCCCccccCccCccCcCcchhhHHHHHHHhcCCceEEEeCCCChHHHH
Confidence 99999999999999766544 47888888775433 1256667 999999999999999999999999999
Q ss_pred HHhcCCCcceEEecC
Q 028621 182 KAIQGERVGTLIGGT 196 (206)
Q Consensus 182 ~~l~g~~~GT~i~~~ 196 (206)
+++.|..+||.+...
T Consensus 262 ~iv~g~kvgt~f~~~ 276 (285)
T KOG1154|consen 262 DIVEGKKVGTFFEQL 276 (285)
T ss_pred HHHhhhhhhhhhhhc
Confidence 999999999999753
No 84
>PRK09411 carbamate kinase; Reviewed
Probab=99.81 E-value=1.3e-18 Score=146.65 Aligned_cols=187 Identities=23% Similarity=0.237 Sum_probs=130.2
Q ss_pred ceEEEEEcCChhhhhhhhh-hcC-CCChhhhhHHHHHHHHHHHHHHHHHHHhCCCCc--e------Eeccccc-------
Q 028621 2 FQVAIVVGGGNIFRGASAA-GNS-GLDRSSADYIGMLATVMNAIFLQATMESIGIPT--R------VQTAFRM------- 64 (206)
Q Consensus 2 ~~~iiVhGGG~~~~~~~~~-~~~-~l~~~~~~~~~~~~~~~~~~ll~~~l~~~gi~a--~------~l~~~~~------- 64 (206)
|+++|.||=|+++--...+ ..+ ..++..+|..+....-.=.++++..|+..+++- + .+++.|.
T Consensus 43 ~~~vitHGNGPQVG~l~~~~~~~~~~~~~pld~~~a~sqG~iGy~l~q~l~~~~~~~~v~t~~Tq~~Vd~~DpaF~~PtK 122 (297)
T PRK09411 43 YRLAIVHGNGPQVGLLALQNLAWKEVEPYPLDVLVAESQGMIGYMLAQSLSAQPQMPPVTTVLTRIEVSPDDPAFLQPEK 122 (297)
T ss_pred CCEEEEeCCccHHHHHHHHHHhhcCCCCCCchhhhhhcccHHHHHHHHHHHHcCCCCCeEEEEEEEEECCCCccccCCCC
Confidence 6899999999997432222 112 234455677766544445556666676666432 1 1233321
Q ss_pred ------------------cc-----------c-cch--h---HHHHHHHHhhCCCEEEEeCCCC----------CCCCCc
Q 028621 65 ------------------SE-----------V-AEP--Y---IRRRAVRHLEKGRVVIFAAGTG----------NPFFTT 99 (206)
Q Consensus 65 ------------------~~-----------v-~~~--~---~~~~l~~~l~~g~ipvi~g~~g----------~~~~~s 99 (206)
++ + ..| . ..+.++.++++|.|||.+|+.| ..++|+
T Consensus 123 piG~~y~~e~a~~l~~e~g~~~~~dg~g~rrVVpSP~P~~iVe~~~I~~Ll~~G~IVI~~gGGGIPV~~~~~G~e~vIDk 202 (297)
T PRK09411 123 FIGPVYQPEEQEALEAAYGWQMKRDGKYLRRVVASPQPRKILDSEAIELLLKEGHVVICSGGGGVPVTEDGAGSEAVIDK 202 (297)
T ss_pred ccCCccCHHHHHHHHHhcCCEEEecCCceEEEccCCCCcceECHHHHHHHHHCCCEEEecCCCCCCeEEcCCCeEEecCH
Confidence 11 0 011 0 1588999999999988765422 126999
Q ss_pred HHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccccccHHHHhcC----CcCcchHHHHHHHHhC-CCcEEEEcC
Q 028621 100 DTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK----DLSVMDMTAITLCQEN-NIPVVVFNL 174 (206)
Q Consensus 100 D~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~----g~~~~k~~a~~~a~~~-gi~v~I~~g 174 (206)
|.+|+.||.+|+||+|+|+|||||||++++ .|++++|++++.+|+.++ |.+..|+++|..+.+. +.+++|.+
T Consensus 203 D~~Aa~LA~~L~Ad~LIiLTDVdGV~~n~~--~p~~~~I~~it~~e~~~~~~~~GgM~pKVeAA~~~v~~~g~~a~I~~- 279 (297)
T PRK09411 203 DLAAALLAEQINADGLVILTDADAVYENWG--TPQQRAIRHATPDELAPFAKADGAMGPKVTAVSGYVRSRGKPAWIGA- 279 (297)
T ss_pred HHHHHHHHHHhCCCEEEEEeCchhhccCCC--CCCCcCCCCcCHHHHHHhccCCCCcHHHHHHHHHHHHhCCCeEEECC-
Confidence 999999999999999999999999998753 567899999999988754 4445599999666554 56788864
Q ss_pred CCCchHHHHhcCCCcceEEe
Q 028621 175 NQPGNIAKAIQGERVGTLIG 194 (206)
Q Consensus 175 ~~~~~l~~~l~g~~~GT~i~ 194 (206)
++.+.+++.|+ .||+|.
T Consensus 280 --l~~~~~~l~G~-~GT~I~ 296 (297)
T PRK09411 280 --LSRIEETLAGE-AGTCIS 296 (297)
T ss_pred --hhHHHHHHCCC-CCeEEe
Confidence 78888999998 799985
No 85
>COG0549 ArcC Carbamate kinase [Amino acid transport and metabolism]
Probab=99.69 E-value=2.3e-15 Score=124.84 Aligned_cols=117 Identities=32% Similarity=0.416 Sum_probs=96.7
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCC-------------CCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccc
Q 028621 73 RRRAVRHLEKGRVVIFAAGTGNP-------------FFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLD 139 (206)
Q Consensus 73 ~~~l~~~l~~g~ipvi~g~~g~~-------------~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~ 139 (206)
.+.|+.++++|.++|..|+.|.| .+|-|..++.||.+++||.|+++||||+||-+-. .|+.+.++
T Consensus 174 ~~~Ik~L~~~g~vVI~~GGGGIPVv~~~~~~~GVeAVIDKDlasalLA~~i~AD~liILTdVd~Vy~n~g--kp~q~~L~ 251 (312)
T COG0549 174 AEAIKALLESGHVVIAAGGGGIPVVEEGAGLQGVEAVIDKDLASALLAEQIDADLLIILTDVDAVYVNFG--KPNQQALD 251 (312)
T ss_pred HHHHHHHHhCCCEEEEeCCCCcceEecCCCcceeeEEEccHHHHHHHHHHhcCCEEEEEeccchheecCC--Cccchhhc
Confidence 58899999999999988864432 4899999999999999999999999999998754 46789999
Q ss_pred cccHHHHhcC--------CcCcchHHHHHHHHhC-CCcEEEEcCCCCchHHHHhcCCCcceEEec
Q 028621 140 TLTYQEVTSK--------DLSVMDMTAITLCQEN-NIPVVVFNLNQPGNIAKAIQGERVGTLIGG 195 (206)
Q Consensus 140 ~i~~~e~~~~--------g~~~~k~~a~~~a~~~-gi~v~I~~g~~~~~l~~~l~g~~~GT~i~~ 195 (206)
+++.+|+.++ |+|..|++||..-.++ |-+++|.+ .+++.++|.|+ .||.|.+
T Consensus 252 ~v~~~e~~~yl~eg~Fa~GSM~PKVeAai~Fv~~~gk~A~Its---Le~~~~~l~g~-~GT~I~~ 312 (312)
T COG0549 252 RVTVDEMEKYLAEGQFAAGSMGPKVEAAISFVENTGKPAIITS---LENAEAALEGK-AGTVIVP 312 (312)
T ss_pred ccCHHHHHHHHhcCCCCCCCccHHHHHHHHHHHcCCCceEECc---HHHHHHHhccC-CCcEecC
Confidence 9999996642 5666699998655544 56788887 67888999998 6999964
No 86
>KOG2436 consensus Acetylglutamate kinase/acetylglutamate synthase [Amino acid transport and metabolism]
Probab=98.48 E-value=3.6e-07 Score=81.50 Aligned_cols=186 Identities=14% Similarity=0.164 Sum_probs=109.3
Q ss_pred ceEEEEEcCChhhhhhhhhhcCCCChhhh--------hHHHH----HHHHHHHHHHHHHHHhCCCCceEeccccc-----
Q 028621 2 FQVAIVVGGGNIFRGASAAGNSGLDRSSA--------DYIGM----LATVMNAIFLQATMESIGIPTRVQTAFRM----- 64 (206)
Q Consensus 2 ~~~iiVhGGG~~~~~~~~~~~~~l~~~~~--------~~~~~----~~~~~~~~ll~~~l~~~gi~a~~l~~~~~----- 64 (206)
.++|||||+|+++++.... .++.+.+. +.+.. ...+.|..++. .|++.|-.+++.++...
T Consensus 126 l~pIvv~g~~~qin~~l~~--~~ie~~y~~~~RvTda~t~q~~~~~~~~E~n~~lv~-nL~~~g~~ar~~s~g~~v~~~f 202 (520)
T KOG2436|consen 126 LRPIVVPGTQPQINRLLAE--RGIEPEYVDGYRVTDAHTLQAAKESVSLEANLNLVI-NLSQLGTRARPSSSGVRVGNFF 202 (520)
T ss_pred ceEEEecCccHHHHHHHHH--cCCCcccccceecccHHHHHHhhhcchhhhhhHHHH-HHHHhhceecccccccccccee
Confidence 4789999999999996533 35554432 11111 22245555666 47888877776555421
Q ss_pred -------------ccccchh--HHHHHHHHhhCCCEEEEeCC----CCCC-CCCcHHHHHHHHHhcCCcEEEEeeccCcc
Q 028621 65 -------------SEVAEPY--IRRRAVRHLEKGRVVIFAAG----TGNP-FFTTDTAAALRCAEINAEVVLKATNVDGV 124 (206)
Q Consensus 65 -------------~~v~~~~--~~~~l~~~l~~g~ipvi~g~----~g~~-~~~sD~~A~~lA~~l~A~~li~ltdV~Gv 124 (206)
+.+++.+ .-+.+..+++.|.+|++... .|+. .++.|..|..+|..|+|+++++++|+.-+
T Consensus 203 ~a~~~~v~d~~~y~~~gei~~vd~d~i~~l~~~G~mp~L~sla~TaSGqvlnvNa~~~a~elA~~L~~~kli~l~d~g~~ 282 (520)
T KOG2436|consen 203 PADRNGVLDGEDYGLVGEIKKVDVDRIRHLLDAGSMPLLRSLAATASGQVLNVNADEVAGELALALGPDKLILLMDKGRI 282 (520)
T ss_pred ecccccccccceeeeecccceechhhhhhhhhCCCchhehhhcccCccceEEeeHHHHhhHHHhccCcceeEEecccccc
Confidence 1111111 13788889999999998764 3443 48999999999999999999999998434
Q ss_pred ccCCCCCCCCCcccccccHHHHhc----C---Cc-CcchHHHHHHHHhC--CC-cEEEEcCCCCchH-HHHhcCCCcceE
Q 028621 125 YDDNPRRNPNARLLDTLTYQEVTS----K---DL-SVMDMTAITLCQEN--NI-PVVVFNLNQPGNI-AKAIQGERVGTL 192 (206)
Q Consensus 125 ~~~dP~~~~~a~~i~~i~~~e~~~----~---g~-~~~k~~a~~~a~~~--gi-~v~I~~g~~~~~l-~~~l~g~~~GT~ 192 (206)
...++ +.++.+...|... . .. -.-++.+..-.... +. +-+.+....+.++ .+.+..++.||+
T Consensus 283 l~e~g------e~~S~l~l~~e~~~l~k~~qq~~~a~~~v~aV~~~~~~~~p~~~s~~i~~~t~~n~~~~~~te~G~~t~ 356 (520)
T KOG2436|consen 283 LKENG------EDISSLILQEEDAGLRKPSQQKNIAANNVKAVKDGIDSSLPRPSSYNIAITTQQNLIKELFTEKGAGTL 356 (520)
T ss_pred cccCc------ccccccccchhHhhhhhhhhhcccccccchhhhhheeeccCcCCCCCcceeecccccceeeccCCCCcc
Confidence 44444 3444444433221 1 10 01122322222211 11 1123333334444 467888888999
Q ss_pred EecC
Q 028621 193 IGGT 196 (206)
Q Consensus 193 i~~~ 196 (206)
|.+.
T Consensus 357 ~~~g 360 (520)
T KOG2436|consen 357 ISGG 360 (520)
T ss_pred ccCc
Confidence 9863
No 87
>COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only]
Probab=84.74 E-value=1.3 Score=34.44 Aligned_cols=57 Identities=25% Similarity=0.290 Sum_probs=34.3
Q ss_pred EEeeccCccccCCCCCCCCCcccccccHHHHhcCCcCcchHHHHHHHHhCCCcEEEEcCCCCchHH
Q 028621 116 LKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIA 181 (206)
Q Consensus 116 i~ltdV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~g~~~~k~~a~~~a~~~gi~v~I~~g~~~~~l~ 181 (206)
++.+||||++|+. ++.=.-.-+|+..+. +.+=...+..+++|+++-|+.|++...+.
T Consensus 10 Lli~DVDGvLTDG-------~ly~~~~Gee~KaFn--v~DG~Gik~l~~~Gi~vAIITGr~s~ive 66 (170)
T COG1778 10 LLILDVDGVLTDG-------KLYYDENGEEIKAFN--VRDGHGIKLLLKSGIKVAIITGRDSPIVE 66 (170)
T ss_pred EEEEeccceeecC-------eEEEcCCCceeeeee--ccCcHHHHHHHHcCCeEEEEeCCCCHHHH
Confidence 4568999999852 332222222222221 12334456677889998889898877665
No 88
>PF00994 MoCF_biosynth: Probable molybdopterin binding domain; InterPro: IPR001453 Eukaryotic and prokaryotic molybdoenzymes require a molybdopterin cofactor (MoCF) for their activity. The biosynthesis of this cofactor involves a complex multistep enzymatic pathway. One of the eukaryotic proteins involved in this pathway is the Drosophila protein cinnamon [] which is highly similar to gephyrin, a rat microtubule-associated protein which was thought to anchor the glycine receptor to subsynaptic microtubules. Cinnamon and gephyrin are evolutionary related, in their N-terminal half, to the Escherichia coli MoCF biosynthesis proteins mog/chlG and moaB/chlA2 and, in their C-terminal half, to E. coli moeA/chlE.; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process; PDB: 3TCR_B 1O8O_B 1O8Q_G 1EAV_D 1O8N_C 1UUX_A 1UUY_A 2G2C_A 2G4R_C 3K6A_F ....
Probab=74.34 E-value=21 Score=26.62 Aligned_cols=67 Identities=24% Similarity=0.251 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHhCCCCceEecccccccccc-h-hHHHHHHHHhhCCCEEEEeCCCCCCCCCcHHHHHHHHHhcCC
Q 028621 39 VMNAIFLQATMESIGIPTRVQTAFRMSEVAE-P-YIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINA 112 (206)
Q Consensus 39 ~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~-~-~~~~~l~~~l~~g~ipvi~g~~g~~~~~sD~~A~~lA~~l~A 112 (206)
.-|..+++.+|++.|+...... .+.+ + .+.+.++..+++..+.|+.|+ ......|.+...++...+-
T Consensus 16 d~n~~~l~~~l~~~G~~v~~~~-----~v~Dd~~~i~~~l~~~~~~~D~VittGG--~g~~~~D~t~~a~~~~~~~ 84 (144)
T PF00994_consen 16 DSNGPFLAALLEELGIEVIRYG-----IVPDDPDAIKEALRRALDRADLVITTGG--TGPGPDDVTPEALAEAGGR 84 (144)
T ss_dssp BHHHHHHHHHHHHTTEEEEEEE-----EEESSHHHHHHHHHHHHHTTSEEEEESS--SSSSTTCHHHHHHHHHSSE
T ss_pred EhHHHHHHHHHHHcCCeeeEEE-----EECCCHHHHHHHHHhhhccCCEEEEcCC--cCcccCCcccHHHHHhcCc
Confidence 3577888889999888765432 1222 2 255777888888889898875 4446778888888877763
No 89
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=73.67 E-value=4.5 Score=31.66 Aligned_cols=62 Identities=19% Similarity=0.203 Sum_probs=35.4
Q ss_pred EEeeccCccccCCCC-CCCCCcccccccHHHHhcCCcCcchHHHHHHHHhCCCcEEEEcCCCCchHHHHhcCC
Q 028621 116 LKATNVDGVYDDNPR-RNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGE 187 (206)
Q Consensus 116 i~ltdV~Gv~~~dP~-~~~~a~~i~~i~~~e~~~~g~~~~k~~a~~~a~~~gi~v~I~~g~~~~~l~~~l~g~ 187 (206)
.++.|+|||++++-- .+++.......+. -+..+...+.+.|+++.|+++.....+.+++..-
T Consensus 9 ~~v~d~dGv~tdg~~~~~~~g~~~~~~~~----------~D~~~~~~L~~~Gi~laIiT~k~~~~~~~~l~~l 71 (169)
T TIGR02726 9 LVILDVDGVMTDGRIVINDEGIESRNFDI----------KDGMGVIVLQLCGIDVAIITSKKSGAVRHRAEEL 71 (169)
T ss_pred EEEEeCceeeECCeEEEcCCCcEEEEEec----------chHHHHHHHHHCCCEEEEEECCCcHHHHHHHHHC
Confidence 467899999996410 0111122222222 2556667777788887777776666555555433
No 90
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=66.24 E-value=51 Score=24.70 Aligned_cols=65 Identities=20% Similarity=0.169 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHhCCCCceEecccccccccc-h-hHHHHHHHHhhCCCEEEEeCCCCCCCCCcHHHHHHHHHhc
Q 028621 39 VMNAIFLQATMESIGIPTRVQTAFRMSEVAE-P-YIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEI 110 (206)
Q Consensus 39 ~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~-~-~~~~~l~~~l~~g~ipvi~g~~g~~~~~sD~~A~~lA~~l 110 (206)
..|..++.+.|++.|+++.... .+.+ + .+.+.+++++++..+.|++|. .....-|.+...++...
T Consensus 26 d~n~~~l~~~l~~~G~~v~~~~-----~v~Dd~~~i~~~l~~~~~~~DliIttGG--~g~g~~D~t~~ai~~~g 92 (144)
T TIGR00177 26 DSNGPLLAALLEEAGFNVSRLG-----IVPDDPEEIREILRKAVDEADVVLTTGG--TGVGPRDVTPEALEELG 92 (144)
T ss_pred eCcHHHHHHHHHHCCCeEEEEe-----ecCCCHHHHHHHHHHHHhCCCEEEECCC--CCCCCCccHHHHHHHhC
Confidence 4567777888998998766432 1222 2 245667777777778888774 44566788888888765
No 91
>PRK11320 prpB 2-methylisocitrate lyase; Provisional
Probab=61.38 E-value=1e+02 Score=26.33 Aligned_cols=69 Identities=12% Similarity=0.038 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHhCCCCceEecccccc--cccch--------hHHHHHHHHhhCCCEEEEeCCCCCCCCCcHHHHHHHHHh
Q 028621 40 MNAIFLQATMESIGIPTRVQTAFRMS--EVAEP--------YIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAE 109 (206)
Q Consensus 40 ~~~~ll~~~l~~~gi~a~~l~~~~~~--~v~~~--------~~~~~l~~~l~~g~ipvi~g~~g~~~~~sD~~A~~lA~~ 109 (206)
++++++. +.|.+++.++++.+. ..+-| ...+.++++.+.-.+||+...+ ..|++.+.++-.+-..
T Consensus 28 ~SAri~e----~~Gf~ai~~Sg~~~a~~~lG~PD~g~l~~~e~~~~~~~I~~~~~iPviaD~d-~GyG~~~~v~r~V~~~ 102 (292)
T PRK11320 28 YHALLAE----RAGFKAIYLSGGGVAAASLGLPDLGITTLDDVLIDVRRITDACDLPLLVDID-TGFGGAFNIARTVKSM 102 (292)
T ss_pred HHHHHHH----HcCCCEEEeCHHHHHhHhcCCCCCCCCCHHHHHHHHHHHHhccCCCEEEECC-CCCCCHHHHHHHHHHH
Confidence 4555533 478999888886432 11211 1245566666666799987652 3445777776666555
Q ss_pred cCCc
Q 028621 110 INAE 113 (206)
Q Consensus 110 l~A~ 113 (206)
..|-
T Consensus 103 ~~aG 106 (292)
T PRK11320 103 IKAG 106 (292)
T ss_pred HHcC
Confidence 5543
No 92
>cd01240 PH_beta-ARK Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain. Beta adrenergic receptor kinase 1(beta ARK1)(GRK2) pleckstrin homology (PH) domain. Beta ARK1 is a G protein-coupled receptor kinase (GRK). It phosphorylates activated G-protein coupled receptors leading to the release of the previously bound heterotrimeric G protein agonist and thus signal termination. It consists of a domain found in regulators of G-protein signaling (RGS)(RH), a serine/threonine kinase domain and a C-terminal PH domain. The Beta-Ark 1 PH domain has an extended C-terminal helix, which mediates interactions with G beta gamma subunits. PH domains share little sequence conservation, but all have a common fold, which is electrostatically polarized. PH domains also have diverse functions. They are often involved in targeting proteins to the plasma membrane, but few display strong specificity in lipid binding. Any specificity is usually determined by loop regions or
Probab=60.85 E-value=5.3 Score=29.12 Aligned_cols=26 Identities=23% Similarity=0.225 Sum_probs=18.4
Q ss_pred EEEEc-----CChhhhhhhhhhcCC-CChhhhhH
Q 028621 5 AIVVG-----GGNIFRGASAAGNSG-LDRSSADY 32 (206)
Q Consensus 5 iiVhG-----GG~~~~~~~~~~~~~-l~~~~~~~ 32 (206)
.|||| ||+|++. |.++|. +-|..+++
T Consensus 3 cIvhGyi~KLGGPFls~--WQ~Ry~~LfPNRLE~ 34 (116)
T cd01240 3 CIVHGYIKKLGGPFLSQ--WQTRYFKLYPNRLEL 34 (116)
T ss_pred eEEeeehhhhCCHHHHH--HHHHHheeCcceeee
Confidence 58999 9999777 667764 55554443
No 93
>COG0303 MoeA Molybdopterin biosynthesis enzyme [Coenzyme metabolism]
Probab=60.53 E-value=50 Score=29.63 Aligned_cols=71 Identities=24% Similarity=0.220 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHhCCCCceEecccccccccch--hHHHHHHHHhhCCCEEEEeCCCCCCCCCcHHHHHHHHHhcCCcEEE
Q 028621 39 VMNAIFLQATMESIGIPTRVQTAFRMSEVAEP--YIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVL 116 (206)
Q Consensus 39 ~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~~--~~~~~l~~~l~~g~ipvi~g~~g~~~~~sD~~A~~lA~~l~A~~li 116 (206)
.-|..++..+|++.|..... .+.+.+. .+.+.+++.++...+.|+.| |...++.|.+-..+..+++ + +.
T Consensus 202 dsN~~~l~a~l~~~G~e~~~-----~giv~Dd~~~l~~~i~~a~~~~DviItsG--G~SvG~~D~v~~~l~~~lG-~-v~ 272 (404)
T COG0303 202 DSNSYMLAALLERAGGEVVD-----LGIVPDDPEALREAIEKALSEADVIITSG--GVSVGDADYVKAALERELG-E-VL 272 (404)
T ss_pred ecCHHHHHHHHHHcCCceee-----ccccCCCHHHHHHHHHHhhhcCCEEEEeC--CccCcchHhHHHHHHhcCC-c-EE
Confidence 46788888899988886653 2233332 24577778888778888877 4677889999999988788 4 44
Q ss_pred Ee
Q 028621 117 KA 118 (206)
Q Consensus 117 ~l 118 (206)
|+
T Consensus 273 ~~ 274 (404)
T COG0303 273 FH 274 (404)
T ss_pred EE
Confidence 44
No 94
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=60.35 E-value=26 Score=27.94 Aligned_cols=27 Identities=26% Similarity=0.175 Sum_probs=20.0
Q ss_pred HHHHHHHhCCCcEEEEcCCCCchHHHH
Q 028621 157 TAITLCQENNIPVVVFNLNQPGNIAKA 183 (206)
Q Consensus 157 ~a~~~a~~~gi~v~I~~g~~~~~l~~~ 183 (206)
++...+.+.|+++.|+.||.+..+..+
T Consensus 27 ~al~~l~~~G~~~~iaTGR~~~~~~~~ 53 (230)
T PRK01158 27 EAIRKAEKLGIPVILATGNVLCFARAA 53 (230)
T ss_pred HHHHHHHHCCCEEEEEcCCchHHHHHH
Confidence 445566778899889999888776654
No 95
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=59.91 E-value=66 Score=25.04 Aligned_cols=68 Identities=22% Similarity=0.200 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHhCCCCceEecccccccccc-h-hHHHHHHHHhhCCCEEEEeCCCCCCCCCcHHHHHHHHHhcCCc
Q 028621 39 VMNAIFLQATMESIGIPTRVQTAFRMSEVAE-P-YIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAE 113 (206)
Q Consensus 39 ~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~-~-~~~~~l~~~l~~g~ipvi~g~~g~~~~~sD~~A~~lA~~l~A~ 113 (206)
.-|...++..|++.|+++.... .+.+ + .+.+.++.+++...+.|++|+ .....-|.+...++..++-+
T Consensus 18 d~n~~~l~~~L~~~G~~v~~~~-----~v~Dd~~~I~~~l~~~~~~~dlVIttGG--~G~t~~D~t~ea~~~~~~~~ 87 (170)
T cd00885 18 DTNAAFLAKELAELGIEVYRVT-----VVGDDEDRIAEALRRASERADLVITTGG--LGPTHDDLTREAVAKAFGRP 87 (170)
T ss_pred EhHHHHHHHHHHHCCCEEEEEE-----EeCCCHHHHHHHHHHHHhCCCEEEECCC--CCCCCCChHHHHHHHHhCCC
Confidence 3567777888988998765422 1222 2 245677777777778888774 44457788888888888854
No 96
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=57.82 E-value=60 Score=23.85 Aligned_cols=68 Identities=18% Similarity=0.161 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHhCCCCceEecccccccccch-hHHHHHHHHhhCCCEEEEeCCCCCCCCCcHHHHHHHHHhcCC
Q 028621 39 VMNAIFLQATMESIGIPTRVQTAFRMSEVAEP-YIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINA 112 (206)
Q Consensus 39 ~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~~-~~~~~l~~~l~~g~ipvi~g~~g~~~~~sD~~A~~lA~~l~A 112 (206)
.-|..++.++|++.|..+....-. -+++ .+.+.++++++...+.|+.|.. ....-|.+...++..++.
T Consensus 17 d~~~~~l~~~l~~~G~~~~~~~~v----~Dd~~~I~~~l~~~~~~~dliittGG~--g~g~~D~t~~~l~~~~~~ 85 (135)
T smart00852 17 DSNGPALAELLTELGIEVTRYVIV----PDDKEAIKEALREALERADLVITTGGT--GPGPDDVTPEAVAEALGK 85 (135)
T ss_pred cCcHHHHHHHHHHCCCeEEEEEEe----CCCHHHHHHHHHHHHhCCCEEEEcCCC--CCCCCcCcHHHHHHHhCC
Confidence 456677788899999876542211 1222 2456777777777787887753 356678888888887764
No 97
>PRK03673 hypothetical protein; Provisional
Probab=56.76 E-value=72 Score=28.56 Aligned_cols=67 Identities=16% Similarity=0.149 Sum_probs=46.3
Q ss_pred HHHHHHHHHHHhCCCCceEecccccccccc-h-hHHHHHHHHhhCCCEEEEeCCCCCCCCCcHHHHHHHHHhcCCc
Q 028621 40 MNAIFLQATMESIGIPTRVQTAFRMSEVAE-P-YIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAE 113 (206)
Q Consensus 40 ~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~-~-~~~~~l~~~l~~g~ipvi~g~~g~~~~~sD~~A~~lA~~l~A~ 113 (206)
-|+..++..|.+.|+++.... .+.+ + .+.+.++..+++..+.|++|+ .+...-|.+...+|..++-.
T Consensus 21 tN~~~la~~L~~~G~~v~~~~-----~v~D~~~~i~~~l~~a~~~~DlVI~tGG--lGpt~dD~t~~avA~a~g~~ 89 (396)
T PRK03673 21 TNAAWLADFFFHQGLPLSRRN-----TVGDNLDALVAILRERSQHADVLIVNGG--LGPTSDDLSALAAATAAGEG 89 (396)
T ss_pred hHHHHHHHHHHHCCCEEEEEE-----EcCCCHHHHHHHHHHHhccCCEEEEcCC--CCCCCcccHHHHHHHHcCCC
Confidence 477777888999998865432 1222 2 245677778888888888875 33456778888888888853
No 98
>TIGR02317 prpB methylisocitrate lyase. Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.
Probab=55.96 E-value=1.3e+02 Score=25.67 Aligned_cols=69 Identities=12% Similarity=0.053 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHhCCCCceEeccccccc-ccc--------hhHHHHHHHHhhCCCEEEEeCCCCCCCCCcHHHHHHHHHhc
Q 028621 40 MNAIFLQATMESIGIPTRVQTAFRMSE-VAE--------PYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEI 110 (206)
Q Consensus 40 ~~~~ll~~~l~~~gi~a~~l~~~~~~~-v~~--------~~~~~~l~~~l~~g~ipvi~g~~g~~~~~sD~~A~~lA~~l 110 (206)
+|++++. +.|.++..++++.... .+- ....+.++++.+.-.+||+...+ ..|++.+.++-.+-...
T Consensus 24 ~SAri~e----~aGf~Ai~~sg~~~a~~lG~pD~g~lt~~e~~~~~~~I~~~~~iPviaD~d-~GyG~~~~v~~tv~~~~ 98 (285)
T TIGR02317 24 MAALLAE----RAGFEAIYLSGAAVAASLGLPDLGITTLDEVAEDARRITRVTDLPLLVDAD-TGFGEAFNVARTVREME 98 (285)
T ss_pred HHHHHHH----HcCCCEEEEcHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCCEEEECC-CCCCCHHHHHHHHHHHH
Confidence 4555533 4789998888865321 111 12345566666666799987642 34556666665555555
Q ss_pred CCc
Q 028621 111 NAE 113 (206)
Q Consensus 111 ~A~ 113 (206)
.|-
T Consensus 99 ~aG 101 (285)
T TIGR02317 99 DAG 101 (285)
T ss_pred HcC
Confidence 543
No 99
>PRK01215 competence damage-inducible protein A; Provisional
Probab=55.61 E-value=79 Score=26.56 Aligned_cols=68 Identities=18% Similarity=0.148 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHhCCCCceEecccccccccc-h-hHHHHHHHHhhCCCEEEEeCCCCCCCCCcHHHHHHHHHhcCCc
Q 028621 39 VMNAIFLQATMESIGIPTRVQTAFRMSEVAE-P-YIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAE 113 (206)
Q Consensus 39 ~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~-~-~~~~~l~~~l~~g~ipvi~g~~g~~~~~sD~~A~~lA~~l~A~ 113 (206)
.-|...++..|++.|+++.... .+.+ + .+.+.++.+++...+.|++|+ .+...-|.+...+|..++-+
T Consensus 22 dtn~~~l~~~L~~~G~~v~~~~-----~v~Dd~~~I~~~l~~a~~~~DlVIttGG--~g~t~dD~t~eaia~~~g~~ 91 (264)
T PRK01215 22 NTNASWIARRLTYLGYTVRRIT-----VVMDDIEEIVSAFREAIDRADVVVSTGG--LGPTYDDKTNEGFAKALGVE 91 (264)
T ss_pred EhhHHHHHHHHHHCCCeEEEEE-----EeCCCHHHHHHHHHHHhcCCCEEEEeCC--CcCChhhhHHHHHHHHhCCC
Confidence 3577777888999998875432 1222 2 245777788877788888875 34456777888888887754
No 100
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=54.81 E-value=92 Score=26.19 Aligned_cols=67 Identities=25% Similarity=0.314 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHhCCCCceEecccccccccc-h-hHHHHHHHHhhCCCEEEEeCCCCCCCCCcHHHHHHHHHhcCCc
Q 028621 40 MNAIFLQATMESIGIPTRVQTAFRMSEVAE-P-YIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAE 113 (206)
Q Consensus 40 ~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~-~-~~~~~l~~~l~~g~ipvi~g~~g~~~~~sD~~A~~lA~~l~A~ 113 (206)
-|+.-+++.|.+.|++...... |.+ + .+.+.++.++++-.++|++|+.| --.-|.++-.+|++++-+
T Consensus 21 tNa~~la~~L~~~G~~v~~~~~-----VgD~~~~I~~~l~~a~~r~D~vI~tGGLG--PT~DDiT~e~vAka~g~~ 89 (255)
T COG1058 21 TNAAFLADELTELGVDLARITT-----VGDNPDRIVEALREASERADVVITTGGLG--PTHDDLTAEAVAKALGRP 89 (255)
T ss_pred chHHHHHHHHHhcCceEEEEEe-----cCCCHHHHHHHHHHHHhCCCEEEECCCcC--CCccHhHHHHHHHHhCCC
Confidence 4667777788899998765432 233 2 35678888888888888887644 235688888888888854
No 101
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=54.80 E-value=83 Score=23.12 Aligned_cols=65 Identities=17% Similarity=0.138 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHhCCCCceEecccccccccc-h-hHHHHHHHHhhCCCEEEEeCCCCCCCCCcHHHHHHHHHhc
Q 028621 39 VMNAIFLQATMESIGIPTRVQTAFRMSEVAE-P-YIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEI 110 (206)
Q Consensus 39 ~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~-~-~~~~~l~~~l~~g~ipvi~g~~g~~~~~sD~~A~~lA~~l 110 (206)
.-|..++..+|++.|.+..... .+.+ + .+.+.+++++++..+.|++|. .....-|.+...++...
T Consensus 18 d~n~~~l~~~l~~~G~~v~~~~-----~v~Dd~~~i~~~i~~~~~~~DlvittGG--~g~g~~D~t~~ai~~~g 84 (133)
T cd00758 18 DTNGPALEALLEDLGCEVIYAG-----VVPDDADSIRAALIEASREADLVLTTGG--TGVGRRDVTPEALAELG 84 (133)
T ss_pred EchHHHHHHHHHHCCCEEEEee-----ecCCCHHHHHHHHHHHHhcCCEEEECCC--CCCCCCcchHHHHHHhc
Confidence 3577778888888887654321 1222 2 245777778877778888875 44456777777777765
No 102
>COG1707 ACT domain-containing protein [General function prediction only]
Probab=52.95 E-value=47 Score=26.28 Aligned_cols=81 Identities=19% Similarity=0.225 Sum_probs=42.0
Q ss_pred EEEEEcCChhhhhhh-----hhhcCCCChhh--hhHHHHHHHHHHHHHHHHH--HHhCCCCceEecccccccccchhHHH
Q 028621 4 VAIVVGGGNIFRGAS-----AAGNSGLDRSS--ADYIGMLATVMNAIFLQAT--MESIGIPTRVQTAFRMSEVAEPYIRR 74 (206)
Q Consensus 4 ~iiVhGGG~~~~~~~-----~~~~~~l~~~~--~~~~~~~~~~~~~~ll~~~--l~~~gi~a~~l~~~~~~~v~~~~~~~ 74 (206)
=+|+-|||.+..++- .|.++++..+. .|.+...+++--+.-+.+. |..-|+ ..+-+.-+ -..+.+
T Consensus 85 RvIiiGGGAqVsqVA~GAIsEADRHNiRGERISvDTiPlVGEE~laEAVkAV~rLpRv~i--LVLAGslM----GGkIte 158 (218)
T COG1707 85 RVIIIGGGAQVSQVARGAISEADRHNIRGERISVDTIPLVGEEELAEAVKAVARLPRVGI--LVLAGSLM----GGKITE 158 (218)
T ss_pred EEEEECCchhHHHHHHhhcchhhhcccccceeeeecccccChHHHHHHHHHHhcccccee--EEEecccc----cchHHH
Confidence 367889998855432 45566665443 2555555554433333322 111111 11222211 113456
Q ss_pred HHHHHhhCCCEEEEeC
Q 028621 75 RAVRHLEKGRVVIFAA 90 (206)
Q Consensus 75 ~l~~~l~~g~ipvi~g 90 (206)
.++++-+...|||++=
T Consensus 159 aVk~lr~~hgI~VISL 174 (218)
T COG1707 159 AVKELREEHGIPVISL 174 (218)
T ss_pred HHHHHHHhcCCeEEEe
Confidence 7788777878999864
No 103
>cd00886 MogA_MoaB MogA_MoaB family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF) an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea, and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MogA, together with MoeA, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes. In contrast, MoaB shows high similarity to MogA, but little is known about its physiological role. All well studied members of this family form highly stable trimers.
Probab=51.97 E-value=79 Score=23.91 Aligned_cols=67 Identities=12% Similarity=0.112 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHhCCCCceEecccccccccc-h-hHHHHHHHHhh--CCCEEEEeCCCCCCCCCcHHHHHHHHHhcCC
Q 028621 39 VMNAIFLQATMESIGIPTRVQTAFRMSEVAE-P-YIRRRAVRHLE--KGRVVIFAAGTGNPFFTTDTAAALRCAEINA 112 (206)
Q Consensus 39 ~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~-~-~~~~~l~~~l~--~g~ipvi~g~~g~~~~~sD~~A~~lA~~l~A 112 (206)
.-|..+++++|++.|.++.... .+.+ + .+.+.+++.++ ...+.|++|. .....-|.+...++..++.
T Consensus 19 d~n~~~l~~~l~~~G~~v~~~~-----~v~Dd~~~i~~~l~~~~~~~~~DlVittGG--~s~g~~D~t~~al~~~~~~ 89 (152)
T cd00886 19 DRSGPALVELLEEAGHEVVAYE-----IVPDDKDEIREALIEWADEDGVDLILTTGG--TGLAPRDVTPEATRPLLDK 89 (152)
T ss_pred cchHHHHHHHHHHcCCeeeeEE-----EcCCCHHHHHHHHHHHHhcCCCCEEEECCC--cCCCCCcCcHHHHHHHhCC
Confidence 3567777888999997755322 1222 2 24466777777 6678787764 4455667777777777653
No 104
>PLN02151 trehalose-phosphatase
Probab=51.62 E-value=37 Score=29.90 Aligned_cols=67 Identities=6% Similarity=0.117 Sum_probs=39.1
Q ss_pred HHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccccccHHHHhcCCcCcchHHHHHHHHhCCCcEEEEcCCCCchHHHH
Q 028621 104 ALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKA 183 (206)
Q Consensus 104 ~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~g~~~~k~~a~~~a~~~gi~v~I~~g~~~~~l~~~ 183 (206)
-.++...++++++++.|.||=+..- -.+|+.-. ++.+ -.++.+.+. .+.++.|++||..+.+.+.
T Consensus 88 ~~~~~~~~~~~~ll~lDyDGTL~PI-v~~P~~A~---~~~~----------~~~aL~~La-~~~~vaIvSGR~~~~l~~~ 152 (354)
T PLN02151 88 EEILHKSEGKQIVMFLDYDGTLSPI-VDDPDRAF---MSKK----------MRNTVRKLA-KCFPTAIVSGRCREKVSSF 152 (354)
T ss_pred HHHHHhhcCCceEEEEecCccCCCC-CCCccccc---CCHH----------HHHHHHHHh-cCCCEEEEECCCHHHHHHH
Confidence 3455557778999999999966510 00111101 1110 112223323 4568999999999988887
Q ss_pred hc
Q 028621 184 IQ 185 (206)
Q Consensus 184 l~ 185 (206)
+.
T Consensus 153 ~~ 154 (354)
T PLN02151 153 VK 154 (354)
T ss_pred cC
Confidence 64
No 105
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=49.35 E-value=1.2e+02 Score=25.62 Aligned_cols=40 Identities=10% Similarity=0.104 Sum_probs=25.0
Q ss_pred CceEEEEEcCChhhhhhhhhhcCCCChhhhhHHHHHHHHHHHHHHHHHHHhCCCCceEec
Q 028621 1 MFQVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQT 60 (206)
Q Consensus 1 ~~~~iiVhGGG~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ll~~~l~~~gi~a~~l~ 60 (206)
|.++.|++||.|- .|... ..|++-+..+|++.|.+++.++
T Consensus 3 ~~~i~vl~gg~s~--e~~vs------------------l~s~~~v~~aL~~~g~~~~~~~ 42 (296)
T PRK14569 3 NEKIVVLYGGDSP--EREVS------------------LKSGKAVLDSLISQGYDAVGVD 42 (296)
T ss_pred CcEEEEEeCCCCC--chHhH------------------HHHHHHHHHHHHHcCCEEEEEc
Confidence 4689999999988 54311 1233333445677777776654
No 106
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=49.03 E-value=39 Score=28.02 Aligned_cols=54 Identities=19% Similarity=0.196 Sum_probs=35.6
Q ss_pred cEEEEeeccCccccCCCCCCCCCcccccccHHHHhcCCcCcchHHHHHHHHhCCCcEEEEcCCCCchHHHHhc
Q 028621 113 EVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQ 185 (206)
Q Consensus 113 ~~li~ltdV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~g~~~~k~~a~~~a~~~gi~v~I~~g~~~~~l~~~l~ 185 (206)
+..++++|.||=+-++. + .++.. -.++.+.+.+.|+++.++.||....+..++.
T Consensus 6 ~~~lI~~DlDGTLL~~~------~---~i~~~----------~~~ai~~l~~~Gi~~viaTGR~~~~i~~~~~ 59 (271)
T PRK03669 6 DPLLIFTDLDGTLLDSH------T---YDWQP----------AAPWLTRLREAQVPVILCSSKTAAEMLPLQQ 59 (271)
T ss_pred CCeEEEEeCccCCcCCC------C---cCcHH----------HHHHHHHHHHcCCeEEEEcCCCHHHHHHHHH
Confidence 45788999999544321 1 12211 2245667788899999999999888765543
No 107
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=48.42 E-value=52 Score=24.87 Aligned_cols=13 Identities=46% Similarity=0.647 Sum_probs=10.1
Q ss_pred EEeeccCccccCC
Q 028621 116 LKATNVDGVYDDN 128 (206)
Q Consensus 116 i~ltdV~Gv~~~d 128 (206)
++++|.||.+.+.
T Consensus 3 ~~~~D~Dgtl~~~ 15 (154)
T TIGR01670 3 LLILDVDGVLTDG 15 (154)
T ss_pred EEEEeCceeEEcC
Confidence 4678999988764
No 108
>PF11760 CbiG_N: Cobalamin synthesis G N-terminal; InterPro: IPR021744 Members of this family are involved in cobalamin synthesis. The gene encoded by P72862 from SWISSPROT has been designated cbiH but in fact represents a fusion between cbiH and cbiG. As other multi-functional proteins involved in cobalamin biosynthesis catalyse adjacent steps in the pathway, including CysG, CobL (CbiET), CobIJ and CobA-HemD, it is therefore possible that CbiG catalyses a reaction step adjacent to CbiH. In the anaerobic pathway such a step could be the formation of a gamma lactone, which is thought to help to mediate the anaerobic ring contraction process []. Within the cobalamin synthesis pathway CbiG catalyses the both the opening of the lactone ring and the extrusion of the two-carbon fragment of cobalt-precorrin-5A from C-20 and its associated methyl group (deacylation) to give cobalt-precorrin-5B. The N-terminal of the enzyme is conserved in this family, and the C-terminal and the mid-sections are conserved independently in other families, CbiG_C and CbiG_mid, although the distinct function of each region is unclear. ; PDB: 3EEQ_B.
Probab=48.05 E-value=28 Score=24.09 Aligned_cols=27 Identities=7% Similarity=-0.001 Sum_probs=18.1
Q ss_pred CEEEEeCCCCCCCCCcHHHHHHHHHhcCCcE
Q 028621 84 RVVIFAAGTGNPFFTTDTAAALRCAEINAEV 114 (206)
Q Consensus 84 ~ipvi~g~~g~~~~~sD~~A~~lA~~l~A~~ 114 (206)
.||+++|.. +..+.+|..+|..+++..
T Consensus 51 vIplL~GH~----GGan~lA~~iA~~lga~~ 77 (84)
T PF11760_consen 51 VIPLLGGHR----GGANELARQIAELLGAQP 77 (84)
T ss_dssp EEEEE-TTT----T-HHHHHHHHHHHTT-EE
T ss_pred EEEeccCCc----chHHHHHHHHHHHhCCEE
Confidence 356665532 468999999999999963
No 109
>PRK03670 competence damage-inducible protein A; Provisional
Probab=46.13 E-value=1.1e+02 Score=25.53 Aligned_cols=67 Identities=16% Similarity=0.192 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHhCCCCceEecccccccccc-h-hHHHHHHHHhhC-CCEEEEeCCCCCCCCCcHHHHHHHHHhcCC
Q 028621 39 VMNAIFLQATMESIGIPTRVQTAFRMSEVAE-P-YIRRRAVRHLEK-GRVVIFAAGTGNPFFTTDTAAALRCAEINA 112 (206)
Q Consensus 39 ~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~-~-~~~~~l~~~l~~-g~ipvi~g~~g~~~~~sD~~A~~lA~~l~A 112 (206)
.-|...++..|.+.|+++.... .+.+ + .+.+.++.++.+ ..+.|++|+. +...-|.+...+|.+++-
T Consensus 19 dtN~~~la~~L~~~G~~v~~~~-----iV~Dd~~~I~~~l~~a~~~~~DlVIttGGl--Gpt~dD~T~eava~a~g~ 88 (252)
T PRK03670 19 DSNSAFIAQKLTEKGYWVRRIT-----TVGDDVEEIKSVVLEILSRKPEVLVISGGL--GPTHDDVTMLAVAEALGR 88 (252)
T ss_pred ehhHHHHHHHHHHCCCEEEEEE-----EcCCCHHHHHHHHHHHhhCCCCEEEECCCc--cCCCCCchHHHHHHHhCC
Confidence 3567677778888998865422 1222 2 245667777664 4787887753 334456666666666664
No 110
>PLN03017 trehalose-phosphatase
Probab=43.78 E-value=88 Score=27.75 Aligned_cols=66 Identities=8% Similarity=0.107 Sum_probs=41.2
Q ss_pred HHHHHHHhcCCcEEEEeeccCcccc---CCCCCCCCCcccccccHHHHhcCCcCcchHHHHHHHHhCCCcEEEEcCCCCc
Q 028621 102 AAALRCAEINAEVVLKATNVDGVYD---DNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPG 178 (206)
Q Consensus 102 ~A~~lA~~l~A~~li~ltdV~Gv~~---~dP~~~~~a~~i~~i~~~e~~~~g~~~~k~~a~~~a~~~gi~v~I~~g~~~~ 178 (206)
.--.++...+.+++++++|.||=+. ++|. .. .++.+ -.++.+.+. .++++.|++||...
T Consensus 99 ~~~~~~~~~~~k~~llflD~DGTL~Piv~~p~----~a---~i~~~----------~~~aL~~La-~~~~vaIvSGR~~~ 160 (366)
T PLN03017 99 MFEQIMEASRGKQIVMFLDYDGTLSPIVDDPD----KA---FMSSK----------MRRTVKKLA-KCFPTAIVTGRCID 160 (366)
T ss_pred HHHHHHHHhcCCCeEEEEecCCcCcCCcCCcc----cc---cCCHH----------HHHHHHHHh-cCCcEEEEeCCCHH
Confidence 3445666677788999999999665 3332 11 12211 112233333 67889999999998
Q ss_pred hHHHHhc
Q 028621 179 NIAKAIQ 185 (206)
Q Consensus 179 ~l~~~l~ 185 (206)
.+.+++.
T Consensus 161 ~l~~~~~ 167 (366)
T PLN03017 161 KVYNFVK 167 (366)
T ss_pred HHHHhhc
Confidence 8887643
No 111
>cd00887 MoeA MoeA family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF), an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MoeA, together with MoaB, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes.
Probab=41.17 E-value=2e+02 Score=25.46 Aligned_cols=69 Identities=22% Similarity=0.184 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHhCCCCceEecccccccccch--hHHHHHHHHhhCCCEEEEeCCCCCCCCCcHHHHHHHHHhcCCcEE
Q 028621 39 VMNAIFLQATMESIGIPTRVQTAFRMSEVAEP--YIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVV 115 (206)
Q Consensus 39 ~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~~--~~~~~l~~~l~~g~ipvi~g~~g~~~~~sD~~A~~lA~~l~A~~l 115 (206)
.-|..++..+|++.|..+.... .+.+. .+.+.++++++...+.|++|+ .....-|.+...+... +++.+
T Consensus 194 dsn~~~l~~~l~~~G~~~~~~~-----~v~Dd~~~i~~~l~~a~~~~DliittGG--~s~g~~D~~~~al~~~-g~~~~ 264 (394)
T cd00887 194 DSNSYMLAALLRELGAEVVDLG-----IVPDDPEALREALEEALEEADVVITSGG--VSVGDYDFVKEVLEEL-GGEVL 264 (394)
T ss_pred EChHHHHHHHHHHCCCEEEEec-----eeCCCHHHHHHHHHHHhhCCCEEEEeCC--CCCCcchhHHHHHHhC-CCeEE
Confidence 4677788888998887765422 22222 245777777777778888874 4556788888877754 66544
No 112
>TIGR00200 cinA_nterm competence/damage-inducible protein CinA N-terminal domain. cinA is a DNA damage- or competence-inducible protein that is polycistronic with recA in a number of species
Probab=40.29 E-value=1.8e+02 Score=26.24 Aligned_cols=66 Identities=23% Similarity=0.286 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHhCCCCceEecccccccccc-h-hHHHHHHHHhhCCCEEEEeCCCCCCCCCcHHHHHHHHHhcCC
Q 028621 40 MNAIFLQATMESIGIPTRVQTAFRMSEVAE-P-YIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINA 112 (206)
Q Consensus 40 ~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~-~-~~~~~l~~~l~~g~ipvi~g~~g~~~~~sD~~A~~lA~~l~A 112 (206)
-|...++..|++.|+++.... .+.+ + .+.+.++.+++...+.|++|+ .+...-|.+...+|..++-
T Consensus 20 tN~~~l~~~L~~~G~~v~~~~-----~v~Dd~~~i~~~l~~a~~~~DlVIttGG--lgpt~dD~t~eava~~~g~ 87 (413)
T TIGR00200 20 TNAQWLADFLAHQGLPLSRRT-----TVGDNPERLKTIIRIASERADVLIFNGG--LGPTSDDLTAETIATAKGE 87 (413)
T ss_pred chHHHHHHHHHHCCCeEEEEE-----EeCCCHHHHHHHHHHHhcCCCEEEEcCC--CCCCCcccHHHHHHHHhCC
Confidence 467677778888998875422 1222 2 245677777777788888874 3344566667777777664
No 113
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=39.38 E-value=39 Score=26.39 Aligned_cols=15 Identities=40% Similarity=0.727 Sum_probs=11.6
Q ss_pred EEEEeeccCccccCC
Q 028621 114 VVLKATNVDGVYDDN 128 (206)
Q Consensus 114 ~li~ltdV~Gv~~~d 128 (206)
.=.+++|+||.++++
T Consensus 21 ikli~~D~Dgtl~~~ 35 (183)
T PRK09484 21 IRLLICDVDGVFSDG 35 (183)
T ss_pred ceEEEEcCCeeeecC
Confidence 347888999998853
No 114
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=38.35 E-value=1.4e+02 Score=22.94 Aligned_cols=66 Identities=14% Similarity=0.184 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHhCCCCceEecccccccccch--hHHHHHHHHhh--CCCEEEEeCCCCCCCCCcHHHHHHHHHhcC
Q 028621 39 VMNAIFLQATMESIGIPTRVQTAFRMSEVAEP--YIRRRAVRHLE--KGRVVIFAAGTGNPFFTTDTAAALRCAEIN 111 (206)
Q Consensus 39 ~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~~--~~~~~l~~~l~--~g~ipvi~g~~g~~~~~sD~~A~~lA~~l~ 111 (206)
..|..+++.+|++.|.++.... .+.+. .+.+.++++++ ...+.|++|+ .+...-|.+...++..++
T Consensus 21 d~n~~~l~~~L~~~G~~v~~~~-----iv~Dd~~~i~~~l~~~~~~~~~DlVIttGG--tg~g~~D~t~eal~~l~~ 90 (163)
T TIGR02667 21 DTSGQYLVERLTEAGHRLADRA-----IVKDDIYQIRAQVSAWIADPDVQVILITGG--TGFTGRDVTPEALEPLFD 90 (163)
T ss_pred CCcHHHHHHHHHHCCCeEEEEE-----EcCCCHHHHHHHHHHHHhcCCCCEEEECCC--cCCCCCCCcHHHHHHHHC
Confidence 4677778888888888765322 22322 24566667653 4577777764 455667777777777765
No 115
>PRK00549 competence damage-inducible protein A; Provisional
Probab=37.55 E-value=1.5e+02 Score=26.59 Aligned_cols=68 Identities=22% Similarity=0.218 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHhCCCCceEecccccccccc-h-hHHHHHHHHhhCCCEEEEeCCCCCCCCCcHHHHHHHHHhcCCc
Q 028621 39 VMNAIFLQATMESIGIPTRVQTAFRMSEVAE-P-YIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAE 113 (206)
Q Consensus 39 ~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~-~-~~~~~l~~~l~~g~ipvi~g~~g~~~~~sD~~A~~lA~~l~A~ 113 (206)
.-|...++..|++.|++..... .+.+ + .+.+.++.+++...+.|++|+ .+...-|.+...+|..++.+
T Consensus 19 DtN~~~L~~~L~~~G~~v~~~~-----~v~Dd~~~I~~~l~~a~~~~DlVItTGG--lGpt~dD~t~ea~a~~~g~~ 88 (414)
T PRK00549 19 NTNAQFLSEKLAELGIDVYHQT-----VVGDNPERLLSALEIAEERSDLIITTGG--LGPTKDDLTKETVAKFLGRE 88 (414)
T ss_pred EhhHHHHHHHHHHCCCeEEEEE-----EeCCCHHHHHHHHHHhccCCCEEEECCC--CCCCCCccHHHHHHHHhCCC
Confidence 3577777888999998875432 1222 2 245666666666778888875 33345666677777777653
No 116
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=37.23 E-value=84 Score=26.18 Aligned_cols=58 Identities=9% Similarity=0.114 Sum_probs=35.3
Q ss_pred EEEEeeccCccccCCCCCCCCCcccccccHHHHhcCCcCcchHHHHHHHHh-CCCcEEEEcCCCCchHHHHhc
Q 028621 114 VVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQE-NNIPVVVFNLNQPGNIAKAIQ 185 (206)
Q Consensus 114 ~li~ltdV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~g~~~~k~~a~~~a~~-~gi~v~I~~g~~~~~l~~~l~ 185 (206)
++++++|.||=+... ...|+... ++.. -.++.+.+.+ .|+.+.|++||.+..+.+++.
T Consensus 14 ~~li~~D~DGTLl~~-~~~p~~~~---i~~~----------~~~~L~~L~~~~g~~v~i~SGR~~~~~~~~~~ 72 (266)
T PRK10187 14 NYAWFFDLDGTLAEI-KPHPDQVV---VPDN----------ILQGLQLLATANDGALALISGRSMVELDALAK 72 (266)
T ss_pred CEEEEEecCCCCCCC-CCCccccc---CCHH----------HHHHHHHHHhCCCCcEEEEeCCCHHHHHHhcC
Confidence 578889999966531 11122221 2221 1223444444 689999999999998887764
No 117
>PLN02887 hydrolase family protein
Probab=37.09 E-value=81 Score=29.75 Aligned_cols=30 Identities=10% Similarity=0.135 Sum_probs=24.3
Q ss_pred HHHHHHHHhCCCcEEEEcCCCCchHHHHhc
Q 028621 156 MTAITLCQENNIPVVVFNLNQPGNIAKAIQ 185 (206)
Q Consensus 156 ~~a~~~a~~~gi~v~I~~g~~~~~l~~~l~ 185 (206)
.++...+.+.|+.+.|+.||....+.+++.
T Consensus 331 ~eAI~kl~ekGi~~vIATGR~~~~i~~~l~ 360 (580)
T PLN02887 331 AKALKEALSRGVKVVIATGKARPAVIDILK 360 (580)
T ss_pred HHHHHHHHHCCCeEEEEcCCCHHHHHHHHH
Confidence 466778889999999999999887765543
No 118
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=36.36 E-value=1.2e+02 Score=29.31 Aligned_cols=73 Identities=11% Similarity=0.036 Sum_probs=45.9
Q ss_pred HHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccccccHHHHhcCCcCcchHHHHHHHHh-CCCcEEEEcCCCCc
Q 028621 100 DTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQE-NNIPVVVFNLNQPG 178 (206)
Q Consensus 100 D~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~g~~~~k~~a~~~a~~-~gi~v~I~~g~~~~ 178 (206)
+.....+...-.+++-++++|.||-+...- ..|+.. .++.+ -.++...+.+ .|+.|+|++|+.+.
T Consensus 478 ~~~~~~~~~y~~~~~rLi~~D~DGTL~~~~-~~~~~~---~~~~~----------~~~~L~~L~~d~g~~V~ivSGR~~~ 543 (726)
T PRK14501 478 AAAEEIIARYRAASRRLLLLDYDGTLVPFA-PDPELA---VPDKE----------LRDLLRRLAADPNTDVAIISGRDRD 543 (726)
T ss_pred cCHHHHHHHHHhccceEEEEecCccccCCC-CCcccC---CCCHH----------HHHHHHHHHcCCCCeEEEEeCCCHH
Confidence 345566666667888999999999776421 011101 11110 1233444455 48999999999999
Q ss_pred hHHHHhcC
Q 028621 179 NIAKAIQG 186 (206)
Q Consensus 179 ~l~~~l~g 186 (206)
.+.+.+..
T Consensus 544 ~l~~~~~~ 551 (726)
T PRK14501 544 TLERWFGD 551 (726)
T ss_pred HHHHHhCC
Confidence 99888753
No 119
>PF11305 DUF3107: Protein of unknown function (DUF3107); InterPro: IPR021456 Some members in this family of proteins are annotated as ATP-binding proteins however this cannot be confirmed. Currently no function is known.
Probab=33.31 E-value=56 Score=22.05 Aligned_cols=28 Identities=21% Similarity=0.150 Sum_probs=25.2
Q ss_pred CCCcHHHHHHHHHhcCCc-EEEEeeccCc
Q 028621 96 FFTTDTAAALRCAEINAE-VVLKATNVDG 123 (206)
Q Consensus 96 ~~~sD~~A~~lA~~l~A~-~li~ltdV~G 123 (206)
..+.|.+...++.+|..+ .++-+||..|
T Consensus 19 ~~s~dev~~~v~~Al~~~~~~l~LtD~kG 47 (74)
T PF11305_consen 19 DQSADEVEAAVTDALADGSGVLTLTDEKG 47 (74)
T ss_pred CCCHHHHHHHHHHHHhCCCceEEEEeCCC
Confidence 368999999999999988 8999999888
No 120
>PRK05265 pyridoxine 5'-phosphate synthase; Provisional
Probab=33.08 E-value=1.4e+02 Score=24.82 Aligned_cols=72 Identities=18% Similarity=0.093 Sum_probs=51.6
Q ss_pred CCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccccccHHHHhcCCcCcchHHHHHHHHhCCCcEEEEcC
Q 028621 95 PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNL 174 (206)
Q Consensus 95 ~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~g~~~~k~~a~~~a~~~gi~v~I~~g 174 (206)
-|++.|.-....|..+||+.+.+.|. -|..-. ......|+. --..++..|.+.|+.|.--+|
T Consensus 131 LFidP~~~qi~~A~~~GAd~VELhTG---~yA~a~---------~~~~~~el~------~~~~aa~~a~~lGL~VnAGHg 192 (239)
T PRK05265 131 LFIDPDPEQIEAAAEVGADRIELHTG---PYADAK---------TEAEAAELE------RIAKAAKLAASLGLGVNAGHG 192 (239)
T ss_pred EEeCCCHHHHHHHHHhCcCEEEEech---hhhcCC---------CcchHHHHH------HHHHHHHHHHHcCCEEecCCC
Confidence 35899999999999999999999995 342210 111123332 134667888899999999999
Q ss_pred CCCchHHHHh
Q 028621 175 NQPGNIAKAI 184 (206)
Q Consensus 175 ~~~~~l~~~l 184 (206)
.+.+++..+.
T Consensus 193 Lny~Nv~~i~ 202 (239)
T PRK05265 193 LNYHNVKPIA 202 (239)
T ss_pred CCHHhHHHHh
Confidence 9999887653
No 121
>PF00113 Enolase_C: Enolase, C-terminal TIM barrel domain; InterPro: IPR020810 Enolase (2-phospho-D-glycerate hydrolase) is an essential glycolytic enzyme that catalyses the interconversion of 2-phosphoglycerate and phosphoenolpyruvate [, ]. In vertebrates, there are 3 different, tissue-specific isoenzymes, designated alpha, beta and gamma. Alpha is present in most tissues, beta is localised in muscle tissue, and gamma is found only in nervous tissue. The functional enzyme exists as a dimer of any 2 isoforms. In immature organs and in adult liver, it is usually an alpha homodimer, in adult skeletal muscle, a beta homodimer, and in adult neurons, a gamma homodimer. In developing muscle, it is usually an alpha/beta heterodimer, and in the developing nervous system, an alpha/gamma heterodimer []. The tissue specific forms display minor kinetic differences. Tau-crystallin, one of the major lens proteins in some fish, reptiles and birds, has been shown [] to be evolutionary related to enolase. Neuron-specific enolase is released in a variety of neurological diseases, such as multiple sclerosis and after seizures or acute stroke. Several tumour cells have also been found positive for neuron-specific enolase. Beta-enolase deficiency is associated with glycogenosis type XIII defect.; GO: 0000287 magnesium ion binding, 0004634 phosphopyruvate hydratase activity, 0006096 glycolysis, 0000015 phosphopyruvate hydratase complex; PDB: 2FYM_D 3H8A_C 1E9I_D 3TQP_B 2PU1_A 1OEP_A 2PA6_A 1PDY_A 1PDZ_A 3UJ2_E ....
Probab=32.55 E-value=1.5e+02 Score=25.41 Aligned_cols=70 Identities=17% Similarity=0.111 Sum_probs=37.3
Q ss_pred HHHHHHHHHHhCCCCceEecccccccccchhHHHHHHHHhhCCCEEEEeCCCCCCCCCcHHHHHHHHHhcCCcEE
Q 028621 41 NAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVV 115 (206)
Q Consensus 41 ~~~ll~~~l~~~gi~a~~l~~~~~~~v~~~~~~~~l~~~l~~g~ipvi~g~~g~~~~~sD~~A~~lA~~l~A~~l 115 (206)
|...++..+...-.++..+-+-+++-+++ ..+.++..-++|+.+|++.-.| -+.|+.-+.||..++|..+
T Consensus 188 n~~ri~~~i~~~~~na~llK~NQigTvte--~lea~~~a~~~g~~~vvS~rsg---EteD~~iadLaVg~~a~~i 257 (295)
T PF00113_consen 188 NPKRIKKGIEKKACNALLLKPNQIGTVTE--TLEAVKLAKSAGWGVVVSHRSG---ETEDTFIADLAVGLGAGQI 257 (295)
T ss_dssp -HHHHHHHHHCT--SEEEE-HHHHSSHHH--HHHHHHHHHHTT-EEEEE--SS-----S--HHHHHHHHTT-SEE
T ss_pred chhhhhccchhhhccchhhhhhhhHHHHH--HHHHHHHHHHCCceeeccCCCC---CcCchhHHHHHhccCcCeE
Confidence 44444554544445565555555444432 2356666677899999875433 4689999999999999744
No 122
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=32.55 E-value=98 Score=26.70 Aligned_cols=28 Identities=18% Similarity=0.438 Sum_probs=19.7
Q ss_pred HHHHHHHhCCCcEEEEcCCCCchHHHHh
Q 028621 157 TAITLCQENNIPVVVFNLNQPGNIAKAI 184 (206)
Q Consensus 157 ~a~~~a~~~gi~v~I~~g~~~~~l~~~l 184 (206)
.+...+.+.|+++++++|+....+..+.
T Consensus 25 ~aL~~Lk~~GI~vVlaTGRt~~ev~~l~ 52 (302)
T PRK12702 25 QALAALERRSIPLVLYSLRTRAQLEHLC 52 (302)
T ss_pred HHHHHHHHCCCEEEEEcCCCHHHHHHHH
Confidence 3455667788888888888877765443
No 123
>PLN02580 trehalose-phosphatase
Probab=32.11 E-value=1.4e+02 Score=26.72 Aligned_cols=66 Identities=9% Similarity=0.124 Sum_probs=39.7
Q ss_pred HHHHhcCCcEEEEeeccCccccCCCCCCCCCcccccccHHHHhcCCcCcchHHH-HHHHHhCCCcEEEEcCCCCchHHHH
Q 028621 105 LRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTA-ITLCQENNIPVVVFNLNQPGNIAKA 183 (206)
Q Consensus 105 ~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~g~~~~k~~a-~~~a~~~gi~v~I~~g~~~~~l~~~ 183 (206)
.++...+.++++++.|.||-+..-- .+|+.-.++ . ...+ .+.+.+. .+|.|++||..+.+.++
T Consensus 110 ~~~~~~~~k~~~LfLDyDGTLaPIv-~~Pd~A~~s---~-----------~~~~aL~~La~~-~~VAIVSGR~~~~L~~~ 173 (384)
T PLN02580 110 QIANFAKGKKIALFLDYDGTLSPIV-DDPDRALMS---D-----------AMRSAVKNVAKY-FPTAIISGRSRDKVYEL 173 (384)
T ss_pred HHHHHhhcCCeEEEEecCCccCCCC-CCcccccCC---H-----------HHHHHHHHHhhC-CCEEEEeCCCHHHHHHH
Confidence 4666778889999999999765210 011111111 0 2222 2333333 57999999999999887
Q ss_pred hcC
Q 028621 184 IQG 186 (206)
Q Consensus 184 l~g 186 (206)
+..
T Consensus 174 l~~ 176 (384)
T PLN02580 174 VGL 176 (384)
T ss_pred hCC
Confidence 753
No 124
>COG1658 Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]
Probab=31.32 E-value=1.2e+02 Score=22.60 Aligned_cols=44 Identities=14% Similarity=0.045 Sum_probs=30.4
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCCCcHHHHHHHHHhcCCcEEEEeeccC
Q 028621 74 RRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVD 122 (206)
Q Consensus 74 ~~l~~~l~~g~ipvi~g~~g~~~~~sD~~A~~lA~~l~A~~li~ltdV~ 122 (206)
..++++...+.+-+.+. -.++......++.+++-+.+|+|||-|
T Consensus 22 ~~l~~~~~~~~i~~~g~-----~i~~~~~ie~i~~~~~~k~VIILTD~D 65 (127)
T COG1658 22 ASLKRLGDAGVIITNGS-----AINSLETIELIKKAQKYKGVIILTDPD 65 (127)
T ss_pred HHHHHhcCCceEEEcCC-----ccchHHHHHHHHHhhccCCEEEEeCCC
Confidence 45666666665544321 135577788899988888999999854
No 125
>PLN02423 phosphomannomutase
Probab=29.32 E-value=1.5e+02 Score=24.24 Aligned_cols=53 Identities=15% Similarity=0.146 Sum_probs=32.7
Q ss_pred EEEEeeccCccccCCCCCCCCCcccccccHHHHhcCCcCcchHHHHHHHHhCCCcEEEEcCCCCchHHHHhcC
Q 028621 114 VVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQG 186 (206)
Q Consensus 114 ~li~ltdV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~g~~~~k~~a~~~a~~~gi~v~I~~g~~~~~l~~~l~g 186 (206)
++++++|.||=+-.+. + +++.+ -.++.+.+.+. +.+.+++||....+.+.+..
T Consensus 7 ~~i~~~D~DGTLl~~~------~---~i~~~----------~~~ai~~l~~~-i~fviaTGR~~~~~~~~~~~ 59 (245)
T PLN02423 7 GVIALFDVDGTLTAPR------K---EATPE----------MLEFMKELRKV-VTVGVVGGSDLSKISEQLGK 59 (245)
T ss_pred ceEEEEeccCCCcCCC------C---cCCHH----------HHHHHHHHHhC-CEEEEECCcCHHHHHHHhcc
Confidence 5788899999544221 1 23321 12344555555 88999999987777665553
No 126
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=29.23 E-value=54 Score=21.73 Aligned_cols=13 Identities=23% Similarity=0.317 Sum_probs=7.7
Q ss_pred EEEEEcCC-hhhhh
Q 028621 4 VAIVVGGG-NIFRG 16 (206)
Q Consensus 4 ~iiVhGGG-~~~~~ 16 (206)
++|||||- .-++.
T Consensus 34 ~~lvhGga~~GaD~ 47 (71)
T PF10686_consen 34 MVLVHGGAPKGADR 47 (71)
T ss_pred EEEEECCCCCCHHH
Confidence 56777777 44333
No 127
>PRK10680 molybdopterin biosynthesis protein MoeA; Provisional
Probab=28.24 E-value=3.6e+02 Score=24.22 Aligned_cols=70 Identities=13% Similarity=0.097 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHhCCCCceEecccccccccch--hHHHHHHHHhhCCCEEEEeCCCCCCCCCcHHHHHHHHHhcCCcEEE
Q 028621 39 VMNAIFLQATMESIGIPTRVQTAFRMSEVAEP--YIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVL 116 (206)
Q Consensus 39 ~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~~--~~~~~l~~~l~~g~ipvi~g~~g~~~~~sD~~A~~lA~~l~A~~li 116 (206)
.-|..++..+|++.|+.+..+. .+.+. .+.+.++++++...+.|++|. .....-|.+...+.. ++ +++
T Consensus 203 dsn~~~l~a~l~~~G~~~~~~~-----~v~Dd~~~i~~~l~~a~~~~DlvIttGG--~S~G~~D~~~~al~~-lG--~~~ 272 (411)
T PRK10680 203 DTNRLAVHLMLEQLGCEVINLG-----IIRDDPHALRAAFIEADSQADVVISSGG--VSVGEADYTKTILEE-LG--EIA 272 (411)
T ss_pred EhHHHHHHHHHHHCCCEEEEEE-----EeCCCHHHHHHHHHHhccCCCEEEEcCC--CCCCCcchHHHHHHh-cC--cEE
Confidence 3577788888999998765432 12222 134556665556678787764 556677888877765 45 454
Q ss_pred Ee
Q 028621 117 KA 118 (206)
Q Consensus 117 ~l 118 (206)
|.
T Consensus 273 f~ 274 (411)
T PRK10680 273 FW 274 (411)
T ss_pred EE
Confidence 43
No 128
>PF04122 CW_binding_2: Putative cell wall binding repeat 2; InterPro: IPR007253 This repeat is found in multiple tandem copies in proteins including amidase enhancers [] and adhesins [].
Probab=26.51 E-value=1.5e+02 Score=20.07 Aligned_cols=43 Identities=14% Similarity=0.237 Sum_probs=24.8
Q ss_pred HHHHHhCCCcEEEEcCCCCchHHHHhcCCCcceEEecCCCCcc
Q 028621 159 ITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGTWNSTV 201 (206)
Q Consensus 159 ~~~a~~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~~~~~~~~ 201 (206)
+-.|.+.+.|+.+++...+..+.+.+........+.-....++
T Consensus 43 ~~~a~~~~~PIll~~~~l~~~~~~~l~~~~~~~v~iiGg~~~i 85 (92)
T PF04122_consen 43 SPLAAKNNAPILLVNNSLPSSVKAFLKSLNIKKVYIIGGEGAI 85 (92)
T ss_pred HHHHHhcCCeEEEECCCCCHHHHHHHHHcCCCEEEEECCCCcc
Confidence 4455667888888875556666666665544333333333333
No 129
>PRK14690 molybdopterin biosynthesis protein MoeA; Provisional
Probab=26.20 E-value=2.9e+02 Score=24.84 Aligned_cols=65 Identities=18% Similarity=0.120 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHhCCCCceEecccccccccc-h-hHHHHHHHHhhCCCEEEEeCCCCCCCCCcHHHHHHHHHhcC
Q 028621 39 VMNAIFLQATMESIGIPTRVQTAFRMSEVAE-P-YIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEIN 111 (206)
Q Consensus 39 ~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~-~-~~~~~l~~~l~~g~ipvi~g~~g~~~~~sD~~A~~lA~~l~ 111 (206)
.-|..++..+|++.|.++.... .+.+ . .+.+.+++++++..+.|++|. ...+.-|.+...+... +
T Consensus 219 dsN~~~L~a~l~~~G~~v~~~~-----~v~Dd~~~i~~~l~~a~~~~DlIItTGG--~S~G~~D~v~~~l~~~-G 285 (419)
T PRK14690 219 DANRPMLLALARRWGHAPVDLG-----RVGDDRAALAARLDRAAAEADVILTSGG--ASAGDEDHVSALLREA-G 285 (419)
T ss_pred eCHHHHHHHHHHHCCCEEEEEe-----eeCCCHHHHHHHHHHhCccCCEEEEcCC--ccCCCcchHHHHHHhc-C
Confidence 3578888888999998765422 2222 2 245667777777778888764 5556778888877754 5
No 130
>PTZ00436 60S ribosomal protein L19-like protein; Provisional
Probab=26.07 E-value=96 Score=26.81 Aligned_cols=47 Identities=13% Similarity=0.180 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHhCCCCceEecccccccccchhHHHHHHHHhhCCCEEE
Q 028621 40 MNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVI 87 (206)
Q Consensus 40 ~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~~~~~~~l~~~l~~g~ipv 87 (206)
+..+|-+++| ..|.+=+++++-....|.+-..++.|+.|++.|.|-.
T Consensus 6 lQKRLAAsVL-~cGk~RVWiDPnel~eIa~AiTReDIRkLIkdGlIik 52 (357)
T PTZ00436 6 LQARLAADIL-RCGRHRVWLDPNEASEISNANSRKSVRKLIKDGLIIR 52 (357)
T ss_pred HHHHHHHHHh-CCCCCceeeCHHHHHHHHHhhhHHHHHHHHHCCCeee
Confidence 4456777766 4899999998876544433334688999999998855
No 131
>PF03740 PdxJ: Pyridoxal phosphate biosynthesis protein PdxJ; InterPro: IPR004569 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents PdxJ, which catalyses the condensation of 1-amino-3-oxo-4-(phosphohydroxy)propan-2-one and 1-deoxy-D-xylulose-5-phosphate to form pyridoxine-5'-phosphate. The product of the PdxJ reaction is then oxidized by PdxH to pyridoxal 5'-phosphate.; GO: 0008615 pyridoxine biosynthetic process, 0005737 cytoplasm; PDB: 3F4N_B 3O6D_A 3O6C_A 1M5W_G 1IXQ_D 1IXP_B 1IXN_A 1HO4_C 1HO1_A 1IXO_D ....
Probab=23.66 E-value=1e+02 Score=25.64 Aligned_cols=92 Identities=15% Similarity=0.043 Sum_probs=54.0
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccccccHHHH-hcCCc
Q 028621 73 RRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEV-TSKDL 151 (206)
Q Consensus 73 ~~~l~~~l~~g~ipvi~g~~g~~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~~i~~~e~-~~~g~ 151 (206)
.+.++++-+.| |.| .-|++.|.-....|..+|||.+.+.|. -|.+- ..-+.-..+|+ .
T Consensus 114 ~~~i~~L~~~g-Irv------SLFiDP~~~qi~~A~~~Gad~VELhTG---~yA~a-------~~~~~~~~~ell~---- 172 (239)
T PF03740_consen 114 KPVIKRLKDAG-IRV------SLFIDPDPEQIEAAKELGADRVELHTG---PYANA-------FDDAEEAEEELLE---- 172 (239)
T ss_dssp HHHHHHHHHTT--EE------EEEE-S-HHHHHHHHHTT-SEEEEETH---HHHHH-------SSHHHHHHHHHHH----
T ss_pred HHHHHHHHhCC-CEE------EEEeCCCHHHHHHHHHcCCCEEEEehh---Hhhhh-------cCCHHHHHHHHHH----
Confidence 34444444555 333 235899999999999999999999985 33211 00000001111 1
Q ss_pred CcchHHHHHHHHhCCCcEEEEcCCCCchHHHHhcCC
Q 028621 152 SVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGE 187 (206)
Q Consensus 152 ~~~k~~a~~~a~~~gi~v~I~~g~~~~~l~~~l~g~ 187 (206)
--..++..|.+.|+.|..-+|-+.+++..+.+-.
T Consensus 173 --~l~~aa~~a~~lGL~VnAGHgL~y~N~~~i~~i~ 206 (239)
T PF03740_consen 173 --RLRDAARYAHELGLGVNAGHGLNYDNVRPIAAIP 206 (239)
T ss_dssp --HHHHHHHHHHHTT-EEEEETT--TTTHHHHHTST
T ss_pred --HHHHHHHHHHHcCCEEecCCCCCHHHHHHHHhCC
Confidence 1246778899999999999999999998877643
No 132
>COG0148 Eno Enolase [Carbohydrate transport and metabolism]
Probab=23.42 E-value=2.9e+02 Score=24.93 Aligned_cols=71 Identities=15% Similarity=0.058 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHhCCCCceEecccccccccchhHHHHHHHHhhCCCEEEEeCCCCCCCCCcHHHHHHHHHhcCCcEE
Q 028621 40 MNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVV 115 (206)
Q Consensus 40 ~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~~~~~~~l~~~l~~g~ipvi~g~~g~~~~~sD~~A~~lA~~l~A~~l 115 (206)
-|...++.-++..-.+++.+-+-+++-+++ ..+.++...++|+-||++-- ..=+.|++-+.||..++|..+
T Consensus 314 TN~~~l~~gi~~g~aNaiLIK~NQIGTLTE--t~~ai~~A~~~gy~~viSHR---SGETeD~tIAdLAVa~~agqI 384 (423)
T COG0148 314 TNPKRLKKGIEKGAANAILIKPNQIGTLTE--TLEAINLAKDAGYTAVISHR---SGETEDTTIADLAVATNAGQI 384 (423)
T ss_pred cCHHHHHHHHHhccCceEEEechhcccHHH--HHHHHHHHHHCCCeEEEecC---CCCcccchHHHHHHHhCCCee
Confidence 355555555543334555555555544433 23566777789999998753 334789999999999998643
No 133
>PRK08570 rpl19e 50S ribosomal protein L19e; Reviewed
Probab=22.92 E-value=1.1e+02 Score=23.57 Aligned_cols=48 Identities=13% Similarity=0.169 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHhCCCCceEecccccccccchhHHHHHHHHhhCCCEEEE
Q 028621 40 MNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIF 88 (206)
Q Consensus 40 ~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~~~~~~~l~~~l~~g~ipvi 88 (206)
.-.+|.++.| ..|.+=++++|-....+.+....+.|..|++.|.|-.-
T Consensus 6 ~qkRLAA~iL-~~G~~rVw~DP~~~~eI~~A~tR~dIR~LI~~G~I~~k 53 (150)
T PRK08570 6 AQKRLAADIL-GVGVSRVWIDPEALEDVAEAITREDIRELIKEGVIKAK 53 (150)
T ss_pred HHHHHHHHHH-CCCccceeeCHHHHHHHHHHhhHHHHHHHHHCCCeeec
Confidence 3455666666 48999999988765444333346889999999988553
No 134
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=22.86 E-value=81 Score=20.35 Aligned_cols=60 Identities=15% Similarity=0.239 Sum_probs=37.6
Q ss_pred HHHHHHhCCCCceEecccccccccchhHHHHHHHHhhCCCEEEEeCCCCCCCCCcHHHHHHHHHhcC
Q 028621 45 LQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEIN 111 (206)
Q Consensus 45 l~~~l~~~gi~a~~l~~~~~~~v~~~~~~~~l~~~l~~g~ipvi~g~~g~~~~~sD~~A~~lA~~l~ 111 (206)
+..+|+..|++..... .+.. .. ...+.+.-..|.+|++- .+|....+|..++-+|++..+
T Consensus 13 v~~~l~~~~i~~~~~~-v~~~--~~---~~~~~~~~p~~~vPvL~-~~g~~l~dS~~I~~yL~~~~~ 72 (75)
T PF13417_consen 13 VRLALEEKGIPYELVP-VDPE--EK---RPEFLKLNPKGKVPVLV-DDGEVLTDSAAIIEYLEERYP 72 (75)
T ss_dssp HHHHHHHHTEEEEEEE-EBTT--ST---SHHHHHHSTTSBSSEEE-ETTEEEESHHHHHHHHHHHST
T ss_pred HHHHHHHcCCeEEEec-cCcc--cc---hhHHHhhcccccceEEE-ECCEEEeCHHHHHHHHHHHcC
Confidence 3445667787654422 1110 11 12344555689999987 346778899999999988765
No 135
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=22.52 E-value=3.1e+02 Score=22.12 Aligned_cols=24 Identities=8% Similarity=-0.047 Sum_probs=18.2
Q ss_pred HHHhCCCcEEEEcCCCCchHHHHh
Q 028621 161 LCQENNIPVVVFNLNQPGNIAKAI 184 (206)
Q Consensus 161 ~a~~~gi~v~I~~g~~~~~l~~~l 184 (206)
.+.+.|+.+.+++||.+..+.+++
T Consensus 32 ~~~~~gi~fv~aTGR~~~~~~~~~ 55 (249)
T TIGR01485 32 DHRGEDSLLVYSTGRSPHSYKELQ 55 (249)
T ss_pred HhhccCceEEEEcCCCHHHHHHHH
Confidence 456678888888888888777663
No 136
>PRK14497 putative molybdopterin biosynthesis protein MoeA/unknown domain fusion protein; Provisional
Probab=22.51 E-value=3.2e+02 Score=25.63 Aligned_cols=65 Identities=15% Similarity=0.158 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHhCCCCceEecccccccccc-h-hHHHHHHHHhhCCCEEEEeCCCCCCCCCcHHHHHHHHHhcC
Q 028621 39 VMNAIFLQATMESIGIPTRVQTAFRMSEVAE-P-YIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEIN 111 (206)
Q Consensus 39 ~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~-~-~~~~~l~~~l~~g~ipvi~g~~g~~~~~sD~~A~~lA~~l~ 111 (206)
.-|..+++++|++.|..+..+. .+.+ + .+.+.+++.++...+.|++|. .+.+.-|.+...+.. ++
T Consensus 205 dsNs~~L~a~l~~~G~~v~~~~-----iv~Dd~e~i~~~l~~al~~~DlVIttGG--tS~G~~D~~~~al~~-lG 271 (546)
T PRK14497 205 ESNLHYLYSKLKSEGYKIVGLS-----LLSDDKESIKNEIKRAISVADVLILTGG--TSAGEKDFVHQAIRE-LG 271 (546)
T ss_pred EhHHHHHHHHHHHCCCEEEEEE-----EeCCCHHHHHHHHHHhhhcCCEEEEcCC--ccCCCCccHHHHHhh-cC
Confidence 3588888888998998755432 1222 2 245667777777788888764 555677877776665 45
No 137
>PF07859 Abhydrolase_3: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR013094 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents the catalytic domain fold-3 of alpha/beta hydrolase. ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3D7R_B 2C7B_B 3ZWQ_B 2YH2_B 3BXP_A 3D3N_A 1LZK_A 1LZL_A 2O7V_A 2O7R_A ....
Probab=22.43 E-value=47 Score=25.82 Aligned_cols=10 Identities=40% Similarity=0.773 Sum_probs=6.5
Q ss_pred EEEEEcCChh
Q 028621 4 VAIVVGGGNI 13 (206)
Q Consensus 4 ~iiVhGGG~~ 13 (206)
++.+||||=.
T Consensus 1 v~~~HGGg~~ 10 (211)
T PF07859_consen 1 VVYIHGGGWV 10 (211)
T ss_dssp EEEE--STTT
T ss_pred CEEECCcccc
Confidence 5789999976
No 138
>PF13511 DUF4124: Domain of unknown function (DUF4124)
Probab=22.39 E-value=91 Score=19.34 Aligned_cols=27 Identities=33% Similarity=0.413 Sum_probs=19.0
Q ss_pred HHHHHhcCCcEEEEeeccCc--cccCCCC
Q 028621 104 ALRCAEINAEVVLKATNVDG--VYDDNPR 130 (206)
Q Consensus 104 ~~lA~~l~A~~li~ltdV~G--v~~~dP~ 130 (206)
.+++...-+..+.-|+|.+| +|++.|.
T Consensus 4 l~l~~~a~aa~vYk~~D~~G~v~ysd~P~ 32 (60)
T PF13511_consen 4 LLLAASAAAAEVYKWVDENGVVHYSDTPP 32 (60)
T ss_pred HHHhHHHhhccEEEEECCCCCEEECccCC
Confidence 33444444567999999999 4887774
No 139
>TIGR00559 pdxJ pyridoxine 5'-phosphate synthase. PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate.
Probab=22.34 E-value=2.9e+02 Score=22.94 Aligned_cols=74 Identities=15% Similarity=0.082 Sum_probs=51.8
Q ss_pred CCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccccccHHHHhcCCcCcchHHHHHHHHhCCCcEEEEcC
Q 028621 95 PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNL 174 (206)
Q Consensus 95 ~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~g~~~~k~~a~~~a~~~gi~v~I~~g 174 (206)
-|++.|.-....|+.+||+.+.+.|. -|.... ..+ +. ..|+. --..++..|.+.|+.|.--+|
T Consensus 128 LFiDP~~~qi~~A~~~GAd~VELhTG---~YA~a~---~~~----~~-~~el~------~i~~aa~~A~~lGL~VnAGHg 190 (237)
T TIGR00559 128 LFIDADKDQISAAAEVGADRIEIHTG---PYANAY---NKK----EM-AEELQ------RIVKASVHAHSLGLKVNAGHG 190 (237)
T ss_pred EEeCCCHHHHHHHHHhCcCEEEEech---hhhcCC---Cch----hH-HHHHH------HHHHHHHHHHHcCCEEecCCC
Confidence 35899999999999999999999995 343211 000 00 12222 124667888899999999999
Q ss_pred CCCchHHHHhc
Q 028621 175 NQPGNIAKAIQ 185 (206)
Q Consensus 175 ~~~~~l~~~l~ 185 (206)
.+.+++..+.+
T Consensus 191 Lny~Nv~~i~~ 201 (237)
T TIGR00559 191 LNYHNVKYFAE 201 (237)
T ss_pred CCHHhHHHHHh
Confidence 99998877654
No 140
>TIGR02471 sucr_syn_bact_C sucrose phosphate synthase, sucrose phosphatase-like domain, bacterial. Sucrose phosphate synthase (SPS) and sucrose phosphate phosphatase (SPP) are the last two enzymes of sucrose biosynthesis. In cyanobacteria and plants, the C-terminal region of most or all versions of SPS has a domain homologous to the known SPP. This domain may serve a binding or regulatory rather than catalytic function. Sequences in this family are bacterial C-terminal regions found in all but two of the putative bacterial sucrose phosphate synthases described by TIGR02472.
Probab=22.23 E-value=1.5e+02 Score=23.68 Aligned_cols=24 Identities=0% Similarity=-0.126 Sum_probs=19.4
Q ss_pred HHhCCCcEEEEcCCCCchHHHHhc
Q 028621 162 CQENNIPVVVFNLNQPGNIAKAIQ 185 (206)
Q Consensus 162 a~~~gi~v~I~~g~~~~~l~~~l~ 185 (206)
+.+.|+.+.+++||.+..+.+++.
T Consensus 26 ~~~~gi~~viaTGR~~~~v~~~~~ 49 (236)
T TIGR02471 26 GSGDAVGFGIATGRSVESAKSRYA 49 (236)
T ss_pred hcCCCceEEEEeCCCHHHHHHHHH
Confidence 466789999999999988887754
No 141
>cd01418 Ribosomal_L19e_A Ribosomal protein L19e, archaeal. L19e is found in the large ribosomal subunit of eukaryotes and archaea. L19e is distinct from the ribosomal subunit L19, which is found in prokaryotes. It consists of two small globular domains connected by an extended segment. It is located toward the surface of the large subunit, with one exposed end involved in forming the intersubunit bridge with the small subunit. The other exposed end is involved in forming the translocon binding site, along with L22, L23, L24, L29, and L31e subunits.
Probab=21.97 E-value=1.1e+02 Score=23.35 Aligned_cols=45 Identities=20% Similarity=0.234 Sum_probs=32.2
Q ss_pred HHHHHHHHHhCCCCceEecccccccccchhHHHHHHHHhhCCCEEE
Q 028621 42 AIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVI 87 (206)
Q Consensus 42 ~~ll~~~l~~~gi~a~~l~~~~~~~v~~~~~~~~l~~~l~~g~ipv 87 (206)
.+|.++.| ..|.+=++++|-....+.+....+.|..|++.|.|-.
T Consensus 5 kRLAA~iL-~~G~~rVw~DP~~~~eI~~A~tR~dIR~LI~~G~I~~ 49 (145)
T cd01418 5 RRLAADIL-GVGINRVWIDPERLEEVAEAITRDDIRALIKEGVIKA 49 (145)
T ss_pred HHHHHHHH-CCCCCeeeeChHHHHHHHHhhhHHHHHHHHHCCCeee
Confidence 45666666 4899999998876544433334688999999998855
No 142
>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase. This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.
Probab=21.93 E-value=5.1e+02 Score=22.18 Aligned_cols=68 Identities=9% Similarity=-0.062 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHhCCCCceEeccccc-----cccc-----chhHHHHHHHHhhCCCEEEEeCCCCCCCCCcHHHHHHHHHh
Q 028621 40 MNAIFLQATMESIGIPTRVQTAFRM-----SEVA-----EPYIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAE 109 (206)
Q Consensus 40 ~~~~ll~~~l~~~gi~a~~l~~~~~-----~~v~-----~~~~~~~l~~~l~~g~ipvi~g~~g~~~~~sD~~A~~lA~~ 109 (206)
+|++++ ++.|.+++.++++.. +.-+ -....+.++++...-.+||+...+ ..|++.-.++-.+-..
T Consensus 27 ~SArl~----e~aGf~ai~~sg~~~~as~lG~pD~g~l~~~e~~~~~~~I~~~~~lPv~aD~d-tGyG~~~~v~r~V~~~ 101 (294)
T TIGR02319 27 LSAKVI----QQAGFPAVHMTGSGTSASMLGLPDLGFTSVSEQAINAKNIVLAVDVPVIMDAD-AGYGNAMSVWRATREF 101 (294)
T ss_pred HHHHHH----HHcCCCEEEecHHHHHHHHcCCCCcCCCCHHHHHHHHHHHHhccCCCEEEECC-CCCCCcHHHHHHHHHH
Confidence 455553 357888888776432 1111 111235566666666799987652 3344544444344443
Q ss_pred cCC
Q 028621 110 INA 112 (206)
Q Consensus 110 l~A 112 (206)
..|
T Consensus 102 ~~a 104 (294)
T TIGR02319 102 ERV 104 (294)
T ss_pred HHc
Confidence 333
No 143
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=21.56 E-value=5.1e+02 Score=22.02 Aligned_cols=75 Identities=13% Similarity=0.086 Sum_probs=37.8
Q ss_pred HHHHHHHHHhCCCCceEeccccc--ccccchhHHHHHHHHh--hCCCEEEEeCCCCCCCCCcHHHH-HHHHHhcCCcEEE
Q 028621 42 AIFLQATMESIGIPTRVQTAFRM--SEVAEPYIRRRAVRHL--EKGRVVIFAAGTGNPFFTTDTAA-ALRCAEINAEVVL 116 (206)
Q Consensus 42 ~~ll~~~l~~~gi~a~~l~~~~~--~~v~~~~~~~~l~~~l--~~g~ipvi~g~~g~~~~~sD~~A-~~lA~~l~A~~li 116 (206)
.+++.. +.+.|++.+.+.+... ...+...-.+.++... ..|++||+.|-.+ ..+.|.++ +..|+.+|||-+.
T Consensus 28 ~~lv~~-li~~Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~g~--~~t~eai~lak~a~~~Gad~il 104 (299)
T COG0329 28 RRLVEF-LIAAGVDGLVVLGTTGESPTLTLEERKEVLEAVVEAVGGRVPVIAGVGS--NSTAEAIELAKHAEKLGADGIL 104 (299)
T ss_pred HHHHHH-HHHcCCCEEEECCCCccchhcCHHHHHHHHHHHHHHHCCCCcEEEecCC--CcHHHHHHHHHHHHhcCCCEEE
Confidence 445554 4468999887766531 1111111112222222 2689999987411 11222222 4556777777766
Q ss_pred Eee
Q 028621 117 KAT 119 (206)
Q Consensus 117 ~lt 119 (206)
.++
T Consensus 105 ~v~ 107 (299)
T COG0329 105 VVP 107 (299)
T ss_pred EeC
Confidence 654
No 144
>cd00481 Ribosomal_L19e Ribosomal protein L19e. L19e is found in the large ribosomal subunit of eukaryotes and archaea. L19e is distinct from the ribosomal subunit L19, which is found in prokaryotes. It consists of two small globular domains connected by an extended segment. It is located toward the surface of the large subunit, with one exposed end involved in forming the intersubunit bridge with the small subunit. The other exposed end is involved in forming the translocon binding site, along with L22, L23, L24, L29, and L31e subunits.
Probab=21.36 E-value=1.2e+02 Score=23.30 Aligned_cols=45 Identities=11% Similarity=0.152 Sum_probs=32.1
Q ss_pred HHHHHHHHHhCCCCceEecccccccccchhHHHHHHHHhhCCCEEE
Q 028621 42 AIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVI 87 (206)
Q Consensus 42 ~~ll~~~l~~~gi~a~~l~~~~~~~v~~~~~~~~l~~~l~~g~ipv 87 (206)
.+|.++.| ..|.+=++++|-....+.+....+.|..|++.|.|-.
T Consensus 5 kRLAA~vL-~~G~~rVW~DP~~~~eI~~A~tR~dIR~LIkdG~I~~ 49 (145)
T cd00481 5 KRLAADIL-KCGKNRVWIDPNELEEIANANTREDIRKLIKDGLIIK 49 (145)
T ss_pred HHHHHHHH-CCCCCceeeCHHHHHHHHHhhhHHHHHHHHHCCCeee
Confidence 45666656 4899999998876544433334688999999998855
No 145
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=20.76 E-value=1.8e+02 Score=23.77 Aligned_cols=30 Identities=7% Similarity=0.136 Sum_probs=23.0
Q ss_pred HHHHHHHHhCCCcEEEEcCCCCchHHHHhc
Q 028621 156 MTAITLCQENNIPVVVFNLNQPGNIAKAIQ 185 (206)
Q Consensus 156 ~~a~~~a~~~gi~v~I~~g~~~~~l~~~l~ 185 (206)
.++.+.+.+.|+.+.++.||.+..+..++.
T Consensus 25 ~~ai~~l~~~G~~~~iaTGR~~~~~~~~~~ 54 (272)
T PRK15126 25 LSTLARLRERDITLTFATGRHVLEMQHILG 54 (272)
T ss_pred HHHHHHHHHCCCEEEEECCCCHHHHHHHHH
Confidence 355667778899999999998887766544
No 146
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=20.72 E-value=1.9e+02 Score=23.50 Aligned_cols=29 Identities=17% Similarity=0.149 Sum_probs=22.6
Q ss_pred HHHHHHHhCCCcEEEEcCCCCchHHHHhc
Q 028621 157 TAITLCQENNIPVVVFNLNQPGNIAKAIQ 185 (206)
Q Consensus 157 ~a~~~a~~~gi~v~I~~g~~~~~l~~~l~ 185 (206)
++...+.+.|+.+.|+.||.+..+..++.
T Consensus 27 ~ai~~~~~~G~~~~iaTGR~~~~~~~~~~ 55 (272)
T PRK10530 27 EALARAREAGYKVIIVTGRHHVAIHPFYQ 55 (272)
T ss_pred HHHHHHHHCCCEEEEEcCCChHHHHHHHH
Confidence 55667788899999999998887765543
No 147
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=20.27 E-value=4.7e+02 Score=22.15 Aligned_cols=44 Identities=20% Similarity=0.157 Sum_probs=29.8
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCCCcHHHHHHHHHhcCCcEEEEeeccC
Q 028621 74 RRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVD 122 (206)
Q Consensus 74 ~~l~~~l~~g~ipvi~g~~g~~~~~sD~~A~~lA~~l~A~~li~ltdV~ 122 (206)
..++.++++..+||+.+ -.+.+.+. +..|-+||||-+..-|.+-
T Consensus 179 ~~l~~i~e~~~vpVivd---AGIgt~sD--a~~AmElGaDgVL~nSaIa 222 (267)
T CHL00162 179 LNLQIIIENAKIPVIID---AGIGTPSE--ASQAMELGASGVLLNTAVA 222 (267)
T ss_pred HHHHHHHHcCCCcEEEe---CCcCCHHH--HHHHHHcCCCEEeecceee
Confidence 56777778777988865 22333333 3467899999888877655
No 148
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=20.26 E-value=1.2e+02 Score=23.90 Aligned_cols=29 Identities=21% Similarity=0.276 Sum_probs=21.6
Q ss_pred HHHHHHHhCCCcEEEEcCCCCchHHHHhc
Q 028621 157 TAITLCQENNIPVVVFNLNQPGNIAKAIQ 185 (206)
Q Consensus 157 ~a~~~a~~~gi~v~I~~g~~~~~l~~~l~ 185 (206)
++...+.+.|+++.+++||.+..+..++.
T Consensus 23 ~~l~~l~~~gi~~~i~TgR~~~~~~~~~~ 51 (221)
T TIGR02463 23 PWLTRLQEAGIPVILCTSKTAAEVEYLQK 51 (221)
T ss_pred HHHHHHHHCCCeEEEEcCCCHHHHHHHHH
Confidence 44556677899999999999887765443
No 149
>PF02773 S-AdoMet_synt_C: S-adenosylmethionine synthetase, C-terminal domain; InterPro: IPR022630 The three domains of S-adenosylmethionine synthetase have the same alpha+beta fold. This entry represents the C-terminal domain of S=adenosylmethionine synthetase and is found in association with PF00438 from PFAM and PF02772 from PFAM. S-adenosylmethionine synthetase (MAT, 2.5.1.6 from EC) is the enzyme that catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP []. AdoMet is an important methyl donor for transmethylation and is also the propylamino donor in polyamine biosynthesis. In bacteria there is a single isoform of AdoMet synthetase (gene metK), there are two in budding yeast (genes SAM1 and SAM2) and in mammals while in plants there is generally a multigene family. The sequence of AdoMet synthetase is highly conserved throughout isozymes and species. The active sites of both the Escherichia coli and rat liver MAT reside between two subunits, with contributions from side chains of residues from both subunits, resulting in a dimer as the minimal catalytic entity. The side chains that contribute to the ligand binding sites are conserved between the two proteins. In the structures of complexes with the E. coli enzyme, the phosphate groups have the same positions in the (PPi plus Pi) complex and the (ADP plus Pi) complex, and are located at the bottom of a deep cavity with the adenosyl group nearer the entrance []; GO: 0004478 methionine adenosyltransferase activity; PDB: 3IML_B 1QM4_B 1O9T_B 1O93_A 1O92_B 1O90_A 1FUG_A 1RG9_D 1XRA_A 1P7L_C ....
Probab=20.21 E-value=1.5e+02 Score=22.51 Aligned_cols=31 Identities=23% Similarity=0.314 Sum_probs=14.1
Q ss_pred EEcCChhhhhhhhhhcCCCChhhhhHHHHHHHH-HHHHHHH
Q 028621 7 VVGGGNIFRGASAAGNSGLDRSSADYIGMLATV-MNAIFLQ 46 (206)
Q Consensus 7 VhGGG~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~ll~ 46 (206)
-||||.| .|-++.-.|+-+..+.| +-+.+++
T Consensus 25 ~hGGGaf---------SGKD~tKvDRsaaY~aR~iAKniVa 56 (138)
T PF02773_consen 25 RHGGGAF---------SGKDPTKVDRSAAYMARYIAKNIVA 56 (138)
T ss_dssp B-BS------------TTB-TTSHHHHHHHHHHHHHHHHHH
T ss_pred ecCCccc---------cCCChhhhhccHHHHHHHHHHHHHH
Confidence 3999999 24456556666665444 4444444
Done!