Query 028621
Match_columns 206
No_of_seqs 169 out of 1633
Neff 8.0
Searched_HMMs 29240
Date Tue Mar 26 00:09:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028621.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028621hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ek6_A Uridylate kinase; UMPK 100.0 2.6E-41 8.8E-46 279.2 20.7 193 2-195 49-241 (243)
2 1ybd_A Uridylate kinase; alpha 100.0 2.4E-40 8.2E-45 272.3 21.2 192 2-195 47-239 (239)
3 4a7w_A Uridylate kinase; trans 100.0 2.3E-40 7.8E-45 273.1 20.8 192 2-194 47-240 (240)
4 1z9d_A Uridylate kinase, UK, U 100.0 5.6E-40 1.9E-44 272.4 22.1 197 2-199 47-244 (252)
5 2a1f_A Uridylate kinase; PYRH, 100.0 3.7E-40 1.3E-44 272.7 20.9 193 2-195 48-240 (247)
6 2va1_A Uridylate kinase; UMPK, 100.0 1.3E-39 4.5E-44 270.9 20.5 192 2-194 63-255 (256)
7 2jjx_A Uridylate kinase, UMP k 100.0 4.7E-39 1.6E-43 267.4 22.5 196 2-198 52-249 (255)
8 3nwy_A Uridylate kinase; allos 100.0 3.8E-39 1.3E-43 270.7 21.1 192 2-194 89-280 (281)
9 2j4j_A Uridylate kinase; trans 100.0 1.2E-37 4E-42 254.5 18.4 180 2-195 35-225 (226)
10 2brx_A Uridylate kinase; UMP k 100.0 2E-36 6.8E-41 250.1 15.6 180 2-195 55-244 (244)
11 3ll9_A Isopentenyl phosphate k 100.0 1.1E-35 3.7E-40 248.9 16.0 190 2-194 42-266 (269)
12 2ij9_A Uridylate kinase; struc 100.0 5.4E-35 1.8E-39 237.5 17.7 177 2-194 33-219 (219)
13 3ll5_A Gamma-glutamyl kinase r 100.0 1.3E-34 4.3E-39 239.9 14.0 187 2-194 40-249 (249)
14 2ogx_A Molybdenum storage prot 100.0 2.7E-33 9.1E-38 235.2 20.2 187 2-198 72-274 (276)
15 2ap9_A NAG kinase, acetylgluta 100.0 3.6E-32 1.2E-36 230.7 18.1 190 2-197 58-292 (299)
16 2ogx_B Molybdenum storage prot 100.0 5.7E-31 2E-35 220.3 20.9 183 2-195 70-269 (270)
17 2rd5_A Acetylglutamate kinase- 100.0 1.1E-31 3.9E-36 227.5 16.7 188 2-195 69-298 (298)
18 2v5h_A Acetylglutamate kinase; 100.0 1.3E-31 4.5E-36 229.2 17.1 193 2-200 82-315 (321)
19 3k4o_A Isopentenyl phosphate k 100.0 3E-32 1E-36 227.7 12.5 182 2-196 53-265 (266)
20 2ako_A Glutamate 5-kinase; str 100.0 8.8E-31 3E-35 216.8 17.5 189 2-194 38-251 (251)
21 2j5v_A Glutamate 5-kinase; pro 100.0 1.2E-30 4E-35 226.9 18.7 194 2-201 43-263 (367)
22 2egx_A Putative acetylglutamat 100.0 3.1E-30 1.1E-34 215.7 17.9 185 2-194 29-269 (269)
23 3d40_A FOMA protein; fosfomyci 100.0 1E-30 3.5E-35 220.5 11.8 189 3-197 66-284 (286)
24 3ab4_A Aspartokinase; aspartat 100.0 1.6E-29 5.5E-34 223.5 19.7 185 2-196 34-244 (421)
25 2buf_A Acetylglutamate kinase; 100.0 2.3E-29 7.7E-34 213.5 19.1 187 2-197 59-298 (300)
26 1gs5_A Acetylglutamate kinase; 100.0 6.4E-30 2.2E-34 212.5 14.3 182 3-194 37-257 (258)
27 2bty_A Acetylglutamate kinase; 100.0 1.9E-29 6.5E-34 212.2 17.1 185 2-196 54-280 (282)
28 3l76_A Aspartokinase; alloster 100.0 1.7E-29 6E-34 231.7 17.9 186 2-197 34-246 (600)
29 3zzh_A Acetylglutamate kinase; 100.0 2.2E-28 7.4E-33 207.6 15.2 184 2-196 79-302 (307)
30 2e9y_A Carbamate kinase; trans 100.0 2.5E-28 8.7E-33 208.5 13.7 185 2-195 47-315 (316)
31 3c1m_A Probable aspartokinase; 100.0 1.1E-27 3.6E-32 214.6 16.7 164 25-197 117-302 (473)
32 2cdq_A Aspartokinase; aspartat 100.0 1.2E-27 4.2E-32 215.5 16.5 165 24-197 134-325 (510)
33 2we5_A Carbamate kinase 1; arg 99.9 1.2E-27 4.2E-32 203.7 12.4 117 73-194 172-309 (310)
34 4ab7_A Protein Arg5,6, mitocho 99.9 8.1E-27 2.8E-31 207.3 16.5 184 2-196 79-302 (464)
35 3d2m_A Putative acetylglutamat 99.9 1E-26 3.4E-31 207.2 17.1 186 2-197 75-305 (456)
36 3s6g_A N-acetylglutamate kinas 99.9 5.7E-27 2E-31 208.4 13.9 186 2-196 89-311 (460)
37 1e19_A Carbamate kinase-like c 99.9 1.1E-26 3.7E-31 198.2 14.4 185 2-195 45-314 (314)
38 3tvi_A Aspartokinase; structur 99.9 2.6E-26 9E-31 203.8 16.0 155 29-197 108-280 (446)
39 2j0w_A Lysine-sensitive aspart 99.9 3E-26 1E-30 203.8 15.3 161 27-197 108-293 (449)
40 3l86_A Acetylglutamate kinase; 99.9 5E-26 1.7E-30 190.9 14.7 172 2-195 67-278 (279)
41 3s6k_A Acetylglutamate kinase; 99.9 1.9E-26 6.6E-31 205.3 5.8 186 2-196 92-314 (467)
42 3kzf_A Carbamate kinase; argin 99.9 9.8E-24 3.3E-28 178.4 13.2 118 73-196 178-317 (317)
43 4axs_A Carbamate kinase; oxido 99.9 1E-22 3.4E-27 174.3 17.2 117 73-195 193-332 (332)
44 3kbq_A Protein TA0487; structu 78.5 6.7 0.00023 29.7 6.8 68 39-113 22-91 (172)
45 3ewi_A N-acylneuraminate cytid 63.2 13 0.00043 27.7 5.3 58 116-185 11-69 (168)
46 2fts_A Gephyrin; gephyrin, neu 60.9 37 0.0013 29.2 8.4 70 40-117 208-279 (419)
47 1mkz_A Molybdenum cofactor bio 55.8 33 0.0011 25.5 6.5 66 39-111 27-96 (172)
48 1k1e_A Deoxy-D-mannose-octulos 55.8 13 0.00046 27.3 4.2 60 116-185 10-70 (180)
49 2pjk_A 178AA long hypothetical 53.8 38 0.0013 25.4 6.5 66 39-111 39-108 (178)
50 2p9j_A Hypothetical protein AQ 53.7 14 0.00049 26.3 4.0 60 116-185 11-71 (162)
51 1y5e_A Molybdenum cofactor bio 53.3 34 0.0012 25.3 6.2 66 39-111 30-99 (169)
52 2is8_A Molybdopterin biosynthe 50.5 34 0.0012 25.2 5.7 65 40-111 21-89 (164)
53 4gdv_A L-asparaginase; NTN enz 45.8 8.2 0.00028 32.1 1.7 26 114-139 181-206 (310)
54 1rkq_A Hypothetical protein YI 44.1 30 0.001 27.3 4.9 51 116-185 7-57 (282)
55 3f9r_A Phosphomannomutase; try 43.1 52 0.0018 25.6 6.1 51 116-185 6-56 (246)
56 3pzy_A MOG; ssgcid, seattle st 42.6 54 0.0018 24.2 5.7 66 39-111 26-93 (164)
57 3rfq_A Pterin-4-alpha-carbinol 41.8 58 0.002 24.7 5.9 67 38-111 47-116 (185)
58 1u02_A Trehalose-6-phosphate p 39.1 34 0.0011 26.4 4.3 28 157-185 30-57 (239)
59 2b30_A Pvivax hypothetical pro 38.6 38 0.0013 27.2 4.7 51 116-184 29-79 (301)
60 1jlj_A Gephyrin; globular alph 36.7 1.2E+02 0.0042 22.7 7.1 65 39-110 33-104 (189)
61 1g8l_A Molybdopterin biosynthe 35.8 1.6E+02 0.0053 25.2 8.3 69 40-118 204-274 (411)
62 1uz5_A MOEA protein, 402AA lon 34.4 1.2E+02 0.0041 25.8 7.4 69 40-118 207-277 (402)
63 2pbq_A Molybdenum cofactor bio 34.3 1.4E+02 0.0046 22.1 6.9 65 39-111 24-95 (178)
64 2r8e_A 3-deoxy-D-manno-octulos 32.6 50 0.0017 24.3 4.2 27 158-184 61-87 (188)
65 2g2c_A Putative molybdenum cof 31.1 86 0.0029 22.9 5.3 64 40-110 25-95 (167)
66 1di6_A MOGA, molybdenum cofact 26.2 2E+02 0.007 21.7 6.8 68 39-111 22-93 (195)
67 1uuy_A CNX1, molybdopterin bio 24.9 2E+02 0.0068 20.8 6.9 64 41-111 26-98 (167)
68 3j21_Q PFEL19, 50S ribosomal p 24.7 52 0.0018 24.3 2.9 47 40-87 6-52 (150)
69 3iwt_A 178AA long hypothetical 24.2 2E+02 0.0067 21.0 6.2 65 39-110 39-107 (178)
70 3n07_A 3-deoxy-D-manno-octulos 23.2 1.7E+02 0.0058 21.7 5.8 28 158-185 60-87 (195)
71 2ksw_A Oryctin; kazal-type, pr 22.4 22 0.00076 21.4 0.4 11 3-13 27-37 (66)
72 3n1u_A Hydrolase, HAD superfam 21.0 2.5E+02 0.0084 20.5 6.3 27 158-184 54-80 (191)
73 3e8m_A Acylneuraminate cytidyl 20.7 1.6E+02 0.0053 20.5 4.9 28 158-185 39-66 (164)
No 1
>3ek6_A Uridylate kinase; UMPK unique GTP B site, allosteric regulation, ATP-binding, nucleotid binding, pyrimidine biosynthesis, transferase; 2.34A {Xanthomonas campestris PV} SCOP: c.73.1.0 PDB: 3ek5_A
Probab=100.00 E-value=2.6e-41 Score=279.20 Aligned_cols=193 Identities=52% Similarity=0.922 Sum_probs=177.8
Q ss_pred ceEEEEEcCChhhhhhhhhhcCCCChhhhhHHHHHHHHHHHHHHHHHHHhCCCCceEecccccccccchhHHHHHHHHhh
Q 028621 2 FQVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLE 81 (206)
Q Consensus 2 ~~~iiVhGGG~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~~~~~~~l~~~l~ 81 (206)
++++||||||+++++.. ..+++++....|+++++++++|+.+++.+|++.|+++..+++++...+.+++..+.+.++|+
T Consensus 49 ~~vviV~gGG~~~~~~~-~~~~g~~~~~~d~~g~l~t~~N~~~l~~al~~~G~~a~~~~~~~~~~v~~~~~~~~~~~lL~ 127 (243)
T 3ek6_A 49 AQVALVIGGGNIFRGAG-LAASGMDRVTGDHMGMLATVINALAMQDALEKLGAKVRVMSAIKINDVCEDFIRRRAIRHLE 127 (243)
T ss_dssp CEEEEEECSTTTSCSTT-TSCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEESSCBTTTBEECCHHHHHHHHH
T ss_pred CeEEEEECCCHHHHHHH-HHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHHcCCCeEEechhhcCcccCcCCHHHHHHHHH
Confidence 58999999999877653 45689988888999999999999988889999999999999999877666655677889999
Q ss_pred CCCEEEEeCCCCCCCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccccccHHHHhcCCcCcchHHHHHH
Q 028621 82 KGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITL 161 (206)
Q Consensus 82 ~g~ipvi~g~~g~~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~g~~~~k~~a~~~ 161 (206)
+|.|||++|+.|.+++++|++|+++|.+|+||+|+++|||||||++||+.+|+++++++++++|+.+.|.++||++|+..
T Consensus 128 ~g~IpVv~~~~g~~~~~~D~~Aa~lA~~l~Ad~li~lTdVdGvy~~dp~~~p~a~~i~~i~~~e~~~~g~~~~~~~a~~~ 207 (243)
T 3ek6_A 128 KGRIAIFAAGTGNPFFTTDSGAALRAIEIGADLLLKATKVDGVYDKDPKKHSDAVRYDSLTYDEVIMQGLEVMDTAAFAL 207 (243)
T ss_dssp TTCEEEEESTTSSTTCCHHHHHHHHHHHHTCSEEEEECSSSSCBSSCGGGCTTCCBCSEECHHHHHHHTCCSSCHHHHHH
T ss_pred CCcEEEEECCCCCCcCChHHHHHHHHHHcCCCEEEEEeCCCccCCCCCCCCCCceecccccHHHHHhCCchhHHHHHHHH
Confidence 99999999988899999999999999999999999999999999999999999999999999988766777899999999
Q ss_pred HHhCCCcEEEEcCCCCchHHHHhcCCCcceEEec
Q 028621 162 CQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGG 195 (206)
Q Consensus 162 a~~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~~ 195 (206)
|.++|++++|+|+++|++|.++|+|+.+||+|.+
T Consensus 208 a~~~gv~v~I~~g~~~~~l~~~l~g~~~GT~i~~ 241 (243)
T 3ek6_A 208 ARDSDLPLRIFGMSEPGVLLRILHGAQIGTLVQG 241 (243)
T ss_dssp HHHTTCCEEEECCCSTTHHHHHHTTCCCSEEECC
T ss_pred HHHCCCeEEEEcCCCccHHHHHHCCCCCceEEee
Confidence 9999999999999999999999999999999987
No 2
>1ybd_A Uridylate kinase; alpha/beta/alpha fold, hexamer, structural genomics, structure initiative, PSI; 2.60A {Neisseria meningitidis} SCOP: c.73.1.3
Probab=100.00 E-value=2.4e-40 Score=272.33 Aligned_cols=192 Identities=55% Similarity=0.901 Sum_probs=173.7
Q ss_pred ceEEEEEcCChhhhhhhhhhcCCCChhhhhHHHHHHHHHHHHHHHHHHHhCCCCceEecccccccccchhH-HHHHHHHh
Q 028621 2 FQVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYI-RRRAVRHL 80 (206)
Q Consensus 2 ~~~iiVhGGG~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~~~~-~~~l~~~l 80 (206)
+++|||||||++++++. ++++++++...+.++++++++|..++..+|+++|+++.++++.+...+.+.+. .+.+ ++|
T Consensus 47 ~~vviV~GgG~~~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~-~ll 124 (239)
T 1ybd_A 47 VQVGIVVGGGNIFRGVS-AQAGSMDRATADYMGMMATVMNALALKDAFETLGIKARVQSALSMQQIAETYARPKAI-QYL 124 (239)
T ss_dssp CEEEEEECCHHHHHHHH-HHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEESSCBSSSCEECCHHHHH-HHH
T ss_pred CeEEEEECCcHHHhchh-HHHcCCCCccHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeeecccccccchhHHHHH-HHH
Confidence 58999999999999975 56789998888888999999999988888999999999999887655544432 2344 789
Q ss_pred hCCCEEEEeCCCCCCCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccccccHHHHhcCCcCcchHHHHH
Q 028621 81 EKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAIT 160 (206)
Q Consensus 81 ~~g~ipvi~g~~g~~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~g~~~~k~~a~~ 160 (206)
+.|.|||++++.|.+++++|++|+++|.+|+||+|+|||||||||++||+.+|++++|++++++|+.++|.++||++|+.
T Consensus 125 ~~g~ipVv~g~~g~~~~~~D~~Aa~lA~~l~Ad~liilTdVdGvy~~dp~~~p~a~~i~~i~~~e~~~~g~~~m~~~a~~ 204 (239)
T 1ybd_A 125 EEGKVVIFAAGTGNPFFTTDTAAALRGAEMNCDVMLKATNVDGVYTADPKKDPSATRYETITFDEALLKNLKVMDATAFA 204 (239)
T ss_dssp HTTCEEEEESTTSSTTCCHHHHHHHHHHHTTCSEEEEECSSSSCBSSCGGGCTTCCBCSEEEHHHHHHTTCCSSCHHHHH
T ss_pred hCCcEEEEECCccCCCCCcHHHHHHHHHhcCCCEEEEeeCCCccCCCCCCCCCCCeEccccCHHHHHHhcccccCHHHHH
Confidence 99999999988888999999999999999999999999999999999999999999999999999988888899999999
Q ss_pred HHHhCCCcEEEEcCCCCchHHHHhcCCCcceEEec
Q 028621 161 LCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGG 195 (206)
Q Consensus 161 ~a~~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~~ 195 (206)
.|.++|++++|+|+++|++|.++|+|+.+||+|.+
T Consensus 205 ~a~~~gv~v~I~~~~~~~~l~~~l~g~~~GT~i~~ 239 (239)
T 1ybd_A 205 LCRERKLNIVVFGIAKEGSLKRVITGEDEGTLVHC 239 (239)
T ss_dssp HHHHTTCCEEEECTTSTTHHHHHHHTCSCSEEEEC
T ss_pred HHHHcCCcEEEEeCCChhHHHHHHcCCCCCeEEcC
Confidence 99999999999999999999999999999999974
No 3
>4a7w_A Uridylate kinase; transferase; HET: GTP; 1.80A {Helicobacter pylori} PDB: 4a7x_A*
Probab=100.00 E-value=2.3e-40 Score=273.08 Aligned_cols=192 Identities=53% Similarity=0.893 Sum_probs=168.6
Q ss_pred ceEEEEEcCChhhhhhhhhhcCC-CChhhhhHHHHHHHHHHHHHHHHHHHhCCCCceEecccccccccchhHHHHHHHHh
Q 028621 2 FQVAIVVGGGNIFRGASAAGNSG-LDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHL 80 (206)
Q Consensus 2 ~~~iiVhGGG~~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~~~~~~~l~~~l 80 (206)
++++||||||++++++.. ++.| ++....+.+.++++.+|+.+++.+|+++|++++++++.++..+.+++..+.+.++|
T Consensus 47 ~~vvlV~gGG~~~~g~~~-~~~G~~~~~~~~~~~~la~~~n~~l~~~~l~~~G~~av~lt~~d~~~~~~~~~~~~i~~lL 125 (240)
T 4a7w_A 47 IEVGIVIGGGNIIRGVSA-AQGGIIRRTSGDYMGMLATVINAVAMQEALEHIGLDTRVQSAIEIKEICESYIYRKAIRHL 125 (240)
T ss_dssp CEEEEEECCTTTC----------CCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEESSCCTTTSEECCHHHHHHHH
T ss_pred CcEEEEECCcHHHhHhHH-HhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEecHHHcCcccCcCcHHHHHHHH
Confidence 589999999999988653 2467 77777788999999999999988899999999999999987766655557788999
Q ss_pred hCCCEEEEeCCCCCCCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccccccHHHHhcCCcCcchHHHHH
Q 028621 81 EKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAIT 160 (206)
Q Consensus 81 ~~g~ipvi~g~~g~~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~g~~~~k~~a~~ 160 (206)
++|.|||++|+.|.+++++|++|+++|.+|+||+|+++|||||||++||+.+|++++|++++++|+.+.|.++||++|+.
T Consensus 126 ~~g~ipVi~~~~g~~~~~~D~~Aa~lA~~l~Ad~li~lTdVdGvy~~dp~~~p~a~~i~~i~~~e~~~~g~~~m~~~a~~ 205 (240)
T 4a7w_A 126 EKGRVVIFGAGTGNPFFTTDTAATLRAIEIGSDLIIKATKVDGIYDKDPNKFKDAKKLDTLSYNDALIGDIEVMDDTAIS 205 (240)
T ss_dssp HTTCEEEEESTTSCTTSCHHHHHHHHHHHTTCSEEEEEESSSSEESSCTTTCTTCCEESEECHHHHHHSSCCSSCHHHHH
T ss_pred HCCCEEEEeCCCCCCCCChHHHHHHHHHHcCCCEEEEccCCCceECCCCCCCCCCeEcceecHHHHHhcCccccHHHHHH
Confidence 99999999998888999999999999999999999999999999999999999999999999999888888899999999
Q ss_pred HHHhCCCcEEEEcCCCCchHHHHhcCC-CcceEEe
Q 028621 161 LCQENNIPVVVFNLNQPGNIAKAIQGE-RVGTLIG 194 (206)
Q Consensus 161 ~a~~~gi~v~I~~g~~~~~l~~~l~g~-~~GT~i~ 194 (206)
.|.++|++++|+|+++|++|.+++.|+ ++||+|.
T Consensus 206 ~a~~~gv~v~I~~g~~~~~l~~~l~g~~g~GT~i~ 240 (240)
T 4a7w_A 206 LAKDNKLPIVVCNMFKKGNLLQVIKHQQGVFSMVK 240 (240)
T ss_dssp HHHHTTCCEEEEESSSTTHHHHHHHHSCSSCEEEC
T ss_pred HHHHCCCeEEEECCCCccHHHHHHCCCCCCceeeC
Confidence 999999999999999999999887765 5899984
No 4
>1z9d_A Uridylate kinase, UK, UMP kinase; structural genomics, protein structure initiative, NYSGXRC, PYRH, putative uridylate kinase, PSI; 2.80A {Streptococcus pyogenes} SCOP: c.73.1.3
Probab=100.00 E-value=5.6e-40 Score=272.45 Aligned_cols=197 Identities=51% Similarity=0.869 Sum_probs=175.9
Q ss_pred ceEEEEEcCChhhhhhhhhhcCCCChhhhhHHHHHHHHHHHHHHHHHHHhCCCCceEecccccccccchhHHHHHHHHhh
Q 028621 2 FQVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLE 81 (206)
Q Consensus 2 ~~~iiVhGGG~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~~~~~~~l~~~l~ 81 (206)
+++|||||||+++++++ ++++++++...+.++++++.+|..++..+|.+.|+++.++++.+...+.+.++...++.+|+
T Consensus 47 ~~vVlVhGgG~~~~g~~-~~~lg~~~~~~~~~~~~~~~~~~~ll~~al~~~G~~~~~~~~~~~~~~~~~~~~~~~~~lL~ 125 (252)
T 1z9d_A 47 VQIALVIGGGNLWRGEP-AADAGMDRVQADYTGMLGTVMNALVMADSLQHYGVDTRVQTAIPMQNVAEPYIRGRALRHLE 125 (252)
T ss_dssp CEEEEEECCTTTCCHHH-HHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHTTTCCEEEEESSCBTTTBEECCHHHHHHHHH
T ss_pred CEEEEEECCChHhccch-HHHcCCCCCchHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeccccccccCcchHHHHHHHHh
Confidence 58999999999999976 56789999888888999999999988888999999999999887654443343344578999
Q ss_pred CCCEEEEeCCCCCCCCCcHHHHHHHHHhcCCcEEEEee-ccCccccCCCCCCCCCcccccccHHHHhcCCcCcchHHHHH
Q 028621 82 KGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKAT-NVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAIT 160 (206)
Q Consensus 82 ~g~ipvi~g~~g~~~~~sD~~A~~lA~~l~A~~li~lt-dV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~g~~~~k~~a~~ 160 (206)
.|.|||++|+.|.+++++|++|+++|.+|+||+|+|+| ||||||++||+.+|++++|+++++.|+.+.+.++||++|+.
T Consensus 126 ~g~IpVi~~~~g~~~~~~D~~Aa~lA~~l~Ad~LiilT~DVdGvy~~dP~~~~~a~~i~~i~~~e~~~~~~~~mk~~aa~ 205 (252)
T 1z9d_A 126 KNRIVVFGAGIGSPYFSTDTTAALRAAEIEADAILMAKNGVDGVYNADPKKDANAVKFDELTHGEVIKRGLKIMDATAST 205 (252)
T ss_dssp TTCEEEEESTTSCTTCCHHHHHHHHHHHTTCSEEEEEESSCCSCBSSCTTTCTTCCBCSEEEHHHHHTTTCCCSCHHHHH
T ss_pred CCCEEEEeCCcCCCCCChHHHHHHHHHhcCCCEEEEecCCCCeeeCCCCCCCCCCeEeeEecHHHHHhccccccCHHHHH
Confidence 99999999987888999999999999999999999999 99999999999999999999999999987788889999999
Q ss_pred HHHhCCCcEEEEcCCCCchHHHHhcCCCcceEEecCCCC
Q 028621 161 LCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGTWNS 199 (206)
Q Consensus 161 ~a~~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~~~~~~ 199 (206)
.|.+.|++++|+|+++|++|.++|+|+..||+|.++..+
T Consensus 206 ~a~~~gv~v~I~~g~~~~~l~~~l~g~~~GT~i~~~~~~ 244 (252)
T 1z9d_A 206 LSMDNDIDLVVFNMNEAGNIQRVVFGEHIGTTVSNKVCD 244 (252)
T ss_dssp HHHHTTCEEEEEETTSTTHHHHHHTTCCCSEEEECC---
T ss_pred HHHHcCCeEEEEeCCCchHHHHHHcCCCCceEEecCCCC
Confidence 999999999999999999999999999999999986554
No 5
>2a1f_A Uridylate kinase; PYRH, structural genomics, PSI, protein ST initiative, NEW YORK SGX research center for structural GEN nysgxrc; 2.10A {Haemophilus influenzae} SCOP: c.73.1.3 PDB: 2bne_A* 2bnf_A* 2v4y_A* 2bnd_A*
Probab=100.00 E-value=3.7e-40 Score=272.73 Aligned_cols=193 Identities=45% Similarity=0.817 Sum_probs=169.5
Q ss_pred ceEEEEEcCChhhhhhhhhhcCCCChhhhhHHHHHHHHHHHHHHHHHHHhCCCCceEecccccccccchhHHHHHHHHhh
Q 028621 2 FQVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLE 81 (206)
Q Consensus 2 ~~~iiVhGGG~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~~~~~~~l~~~l~ 81 (206)
+++|||||||++++++. ++++++++...|.++++++++|..++..+|++.|+++.++++.+...+.+.++...++++|+
T Consensus 48 ~~vVlVhGgG~~~~~~~-~~~~g~~~~~~d~~~~~~~~~~~~ll~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 126 (247)
T 2a1f_A 48 VEVSVVLGGGNLFRGAK-LAKAGMNRVVGDHMGMLATVMNGLAMRDSLFRADVNAKLMSAFQLNGICDTYNWSEAIKMLR 126 (247)
T ss_dssp CEEEEEECCTTTCCCHH-HHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEESSCCTTTSEECCHHHHHHHHH
T ss_pred CeEEEEECCChHhcchh-HHHcCCCCCcHHHHHHHHHHHHHHHHHHHHHHcCCCeEEecccccccccchhhHHHHHHHHh
Confidence 58999999999999975 56789999988999999999999988888999999999999888765544444345678999
Q ss_pred CCCEEEEeCCCCCCCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccccccHHHHhcCCcCcchHHHHHH
Q 028621 82 KGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITL 161 (206)
Q Consensus 82 ~g~ipvi~g~~g~~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~g~~~~k~~a~~~ 161 (206)
.|.|||++|+.|.+++++|++|+++|.+|+||+|+|+|||||||++||+.+|++++|++++++|+.++|.++||++|+..
T Consensus 127 ~g~ipVi~~~~g~~~~~~D~~Aa~lA~~l~Ad~liilTDVdGvy~~dP~~~p~a~~i~~i~~~e~~~~g~~~m~~~aa~~ 206 (247)
T 2a1f_A 127 EKRVVIFSAGTGNPFFTTDSTACLRGIEIEADVVLKATKVDGVYDCDPAKNPDAKLYKNLSYAEVIDKELKVMDLSAFTL 206 (247)
T ss_dssp TTCEEEEESTTSCSSCCHHHHHHHHHHHTTCSEEEEEESSSSCBCC-------CCBCSEECHHHHHHTTCCSSCHHHHHH
T ss_pred CCCEEEEeCCcCCCCCCcHHHHHHHHHhCCCCEEEEEeCCCcccCCCCCCCCCCeEcccCCHHHHHHcCccccCHHHHHH
Confidence 99999999987889999999999999999999999999999999999999999999999999999888888899999999
Q ss_pred HHhCCCcEEEEcCCCCchHHHHhcCCCcceEEec
Q 028621 162 CQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGG 195 (206)
Q Consensus 162 a~~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~~ 195 (206)
|.+.|++++|+|+++|+.|.++++|+.+||+|..
T Consensus 207 a~~~gv~v~I~~~~~~~~l~~~l~g~~~GT~~~~ 240 (247)
T 2a1f_A 207 ARDHGMPIRVFNMGKPGALRQVVTGTEEGTTICE 240 (247)
T ss_dssp HHHHTCCEEEEETTSTTHHHHHHTCSCSSEEECC
T ss_pred HHHcCCcEEEEeCCCchHHHHHHcCCCCceEEee
Confidence 9999999999999999999999999999999975
No 6
>2va1_A Uridylate kinase; UMPK, transferase, pyrimidine biosynthesis, amino acid kinase family; 2.50A {Ureaplasma parvum}
Probab=100.00 E-value=1.3e-39 Score=270.86 Aligned_cols=192 Identities=40% Similarity=0.721 Sum_probs=166.1
Q ss_pred ceEEEEEcCChhhhhhhhhhcCCCChhhhhHHHHHHHHHHHHHHHHHHHhCCCCceEecccccccccchhHHHHHHHHhh
Q 028621 2 FQVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLE 81 (206)
Q Consensus 2 ~~~iiVhGGG~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~~~~~~~l~~~l~ 81 (206)
+++|||||||++++++. ++++++++...+.++++++.+|..++..+|+++|+++.++++.+...+.++++...+..+|+
T Consensus 63 ~~vVlVhGgG~~~~~~~-~~~~g~~~~~~~~~~~l~~~~n~~l~~~~l~~~Gi~a~~~~~~t~~~~~~~~~~~~~~~lL~ 141 (256)
T 2va1_A 63 YIVSIVLGGGNIWRGSI-AKELDMDRNLADNMGMMATIINGLALENALNHLNVNTIVLSAIKCDKLVHESSANNIKKAIE 141 (256)
T ss_dssp SEEEEEECCTTTCCHHH-HHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTTCCEEEEESSCCTTTCEECCHHHHHHHHH
T ss_pred CEEEEEECCcHHhccch-HHHcCCCCCchhHHHHHHHHHHHHHHHHHHHHcCCCeEEEeeeecccccchhhHHHHHHHHh
Confidence 58999999999999976 67789998888888999999999998888999999999988877655555554444478999
Q ss_pred CCCEEEEeCCCCCCCCCcHHHHHHHHHhcCCcEEEEeec-cCccccCCCCCCCCCcccccccHHHHhcCCcCcchHHHHH
Q 028621 82 KGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATN-VDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAIT 160 (206)
Q Consensus 82 ~g~ipvi~g~~g~~~~~sD~~A~~lA~~l~A~~li~ltd-V~Gv~~~dP~~~~~a~~i~~i~~~e~~~~g~~~~k~~a~~ 160 (206)
+|.|||++|..|.+++++|++|+++|.+|+||+|+|+|| |||||++||+++|++++|++++++|+.+++.++||++|+.
T Consensus 142 ~g~IpVi~~~~g~~~~~~D~~Aa~lA~~l~Ad~LiilTD~VdGVy~~dP~~~p~a~~i~~is~~e~~~~~~~~mk~~aa~ 221 (256)
T 2va1_A 142 KEQVMIFVAGTGFPYFTTDSCAAIRAAETESSIILMGKNGVDGVYDSDPKINPNAQFYEHITFNMALTQNLKVMDATALA 221 (256)
T ss_dssp TTCEEEEESTTSSSSCCHHHHHHHHHHHHTCSEEEEEESSCCSBCSCC--------CBSEEEHHHHHHHTCCSSCHHHHH
T ss_pred CCcEEEEECCCCCCCCChhHHHHHHHHhCCCCEEEEeecccCeEEcCCCCCCCCCEEccEEcHHHHHHhccCCccHHHHH
Confidence 999999999888899999999999999999999999999 9999999999999999999999999887666788999999
Q ss_pred HHHhCCCcEEEEcCCCCchHHHHhcCCCcceEEe
Q 028621 161 LCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIG 194 (206)
Q Consensus 161 ~a~~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~ 194 (206)
.|.++|++++|+|+++|++|.++|+|+.+||+|.
T Consensus 222 ~a~~~gv~v~I~~g~~~~~l~~~l~g~~~GT~i~ 255 (256)
T 2va1_A 222 LCQENNINLLVFNIDKPNAIVDVLEKKNKYTIVS 255 (256)
T ss_dssp HHHHTTCEEEEEESSSTTHHHHHHTTCSCEEEEE
T ss_pred HHHHCCCeEEEEeCCCchHHHHHHcCCCCeEEEe
Confidence 9999999999999999999999999999999996
No 7
>2jjx_A Uridylate kinase, UMP kinase; structural genomics, pyrimidine biosynthesis, ATP-binding, nucleotide-binding, OPPF, PYRH, cytoplasm; HET: ATP; 2.82A {Bacillus anthracis}
Probab=100.00 E-value=4.7e-39 Score=267.36 Aligned_cols=196 Identities=43% Similarity=0.768 Sum_probs=175.8
Q ss_pred ceEEEEEcCChhhhhhhhhhcCCCChhhhhHHHHHHHHHHHHHHHHHHHh-CCCCceEecccccccccchhHHHHHHHHh
Q 028621 2 FQVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMES-IGIPTRVQTAFRMSEVAEPYIRRRAVRHL 80 (206)
Q Consensus 2 ~~~iiVhGGG~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ll~~~l~~-~gi~a~~l~~~~~~~v~~~~~~~~l~~~l 80 (206)
+++|||||||++++++. ++++++++...+.++++++.+|+.+++.+|++ +|+++.++++.+...+.+++....+.++|
T Consensus 52 ~~vViV~GgG~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~ll~~~l~~~~Gi~a~~l~~~~~~~v~~~~~~~~~~~lL 130 (255)
T 2jjx_A 52 IEVSIVIGGGNIFRGHL-AEEWGIDRVEADNIGTLGTIINSLMLRGVLTSKTNKEVRVMTSIPFNAVAEPYIRLRAVHHL 130 (255)
T ss_dssp CEEEEEECCTTTCCHHH-HHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCEEEEESSCCCSSSEECCHHHHHHHH
T ss_pred CeEEEEECchHHHhhhH-HHHcCCCCCChHHHhHHHHHHHHHHHHHHHHhhcCCceEEecHHHcCcccCcccHHHHHHHH
Confidence 58999999999998875 66789988777888899999999988889999 99999999998877555444333444889
Q ss_pred hCCCEEEEeCCCCCCCCCcHHHHHHHHHhcCCcEEEEee-ccCccccCCCCCCCCCcccccccHHHHhcCCcCcchHHHH
Q 028621 81 EKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKAT-NVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAI 159 (206)
Q Consensus 81 ~~g~ipvi~g~~g~~~~~sD~~A~~lA~~l~A~~li~lt-dV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~g~~~~k~~a~ 159 (206)
++|.|||++|..|++++++|++|+++|.+|+||+|+||| ||||||++||+.+|++++|++++++|+.++|.++|++.|+
T Consensus 131 ~~g~IpVi~gg~g~~~vttD~~Aa~lA~~l~Ad~liilT~DVdGVy~~dP~~~p~a~~i~~is~~e~~~~G~~~m~~~a~ 210 (255)
T 2jjx_A 131 DNGYIVIFGGGNGQPFVTTDYPSVQRAIEMNSDAILVAKQGVDGVFTSDPKHNKSAKMYRKLNYNDVVRQNIQVMDQAAL 210 (255)
T ss_dssp HTTCEEEEESTTSCSSCCSHHHHHHHHHHHTCSEEEEEESSCCSCBSSCTTTCSSCCBCSEEEHHHHHHTTCCSSCHHHH
T ss_pred hCCcEEEEeCCCCCCccchHHHHHHHHHhcCCCEEEEEeCCcCeeECCCCCCCCCCeEeeEecHHHHHHcCCccCHHHHH
Confidence 999999999866788899999999999999999999999 9999999999999999999999999998888889999999
Q ss_pred HHHHhCCCcEEEEcCCCCchHHHHhcCCCcceEEecCCC
Q 028621 160 TLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGTWN 198 (206)
Q Consensus 160 ~~a~~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~~~~~ 198 (206)
+.+.+.|++++|+|+++|++|.++|+|+..||+|.++.+
T Consensus 211 ~~a~~~gi~v~I~~~~~~~~l~~~l~g~~~GT~I~~~~~ 249 (255)
T 2jjx_A 211 LLARDYNLPAHVFNFDEPGVMRRICLGEHVGTLINDDAS 249 (255)
T ss_dssp HHHHHHTCCEEEEETTSTTHHHHHHBTCCCSEEEESSCC
T ss_pred HHHHHcCCeEEEEeCCCchHHHHHhcCCCCceEEecCcc
Confidence 999889999999999999999999999999999998543
No 8
>3nwy_A Uridylate kinase; allosterically activated form, AAK fold, UMP kinase, transfe; HET: GTP UDP; 2.54A {Mycobacterium tuberculosis}
Probab=100.00 E-value=3.8e-39 Score=270.72 Aligned_cols=192 Identities=56% Similarity=0.917 Sum_probs=166.4
Q ss_pred ceEEEEEcCChhhhhhhhhhcCCCChhhhhHHHHHHHHHHHHHHHHHHHhCCCCceEecccccccccchhHHHHHHHHhh
Q 028621 2 FQVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLE 81 (206)
Q Consensus 2 ~~~iiVhGGG~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~~~~~~~l~~~l~ 81 (206)
++++||||||++++++.. .+++++....++++++++++|+.+++.+|+++|+++..+++.+...+.+++++....++|+
T Consensus 89 ~~vviV~GgG~i~~g~~~-~~~gl~~~~~d~~g~lat~~n~~~l~~~L~~~Gi~a~~~~~~~~~~~~~~~~~~~~l~lL~ 167 (281)
T 3nwy_A 89 VQIAVVIGGGNFFRGAQL-QQLGMERTRSDYMGMLGTVMNSLALQDFLEKEGIVTRVQTAITMGQVAEPYLPLRAVRHLE 167 (281)
T ss_dssp CEEEEEECCTTC---CCT-TTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEESSCCGGGSEECCHHHHHHHHH
T ss_pred CeEEEEECChhHhhhHHH-HhcCCCccchhHHHHHHHHHHHHHHHHHHHHcCCCEEEEecccccccccccchHHHHHHHH
Confidence 689999999999888742 2478888888999999999999999999999999999888887766666654433448999
Q ss_pred CCCEEEEeCCCCCCCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccccccHHHHhcCCcCcchHHHHHH
Q 028621 82 KGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITL 161 (206)
Q Consensus 82 ~g~ipvi~g~~g~~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~g~~~~k~~a~~~ 161 (206)
+|.|||++++.|.++++||++|+++|.+++||+|+++|||||||++||+.+|++++|+++++.|+.+.|.+.||++|+..
T Consensus 168 ~g~IpVv~g~~g~~~~~~D~~Aa~lA~~l~Ad~LiilTDVdGVy~~dP~~~p~A~~i~~is~~e~~~~g~~v~k~~Aa~~ 247 (281)
T 3nwy_A 168 KGRVVIFGAGMGLPYFSTDTTAAQRALEIGADVVLMAKAVDGVFAEDPRVNPEAELLTAVSHREVLDRGLRVADATAFSL 247 (281)
T ss_dssp TTCEEEEESTTSSTTCCHHHHHHHHHHHTTCSEEEEEESSSSCBCC-----CCCCBCSEECHHHHHTTTCCSSCHHHHHH
T ss_pred cCCeEEEECCCCCCCCCHHHHHHHHHHHcCCCEEEEeeccCccccCCCCcCCCCeEcccccHHHHHHcCCCcHHHHHHHH
Confidence 99999999988899999999999999999999999999999999999999999999999999998777778899999999
Q ss_pred HHhCCCcEEEEcCCCCchHHHHhcCCCcceEEe
Q 028621 162 CQENNIPVVVFNLNQPGNIAKAIQGERVGTLIG 194 (206)
Q Consensus 162 a~~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~ 194 (206)
|.++|++++|+|+++|++|.++|+|+.+||+|.
T Consensus 248 a~~~Gi~v~I~~g~~p~~l~~~l~Ge~~GT~i~ 280 (281)
T 3nwy_A 248 CMDNGMPILVFNLLTDGNIARAVRGEKIGTLVT 280 (281)
T ss_dssp HHTTTCCEEEEETTSTTHHHHHHHTCCCSEEEC
T ss_pred HHHCCCeEEEecCCCchHHHHHHcCCCCceEEe
Confidence 999999999999999999999999999999996
No 9
>2j4j_A Uridylate kinase; transferase, nucleoside monophosphate kinase, UMP kinase, aspartokinase fold, pyrimidine nucleotide synthesis; HET: U5P ACP 4TC; 2.1A {Sulfolobus solfataricus} PDB: 2j4k_A* 2j4l_A*
Probab=100.00 E-value=1.2e-37 Score=254.45 Aligned_cols=180 Identities=28% Similarity=0.452 Sum_probs=160.1
Q ss_pred ceEEEEEcCChhhhhhh-hhhcCCCChhhhhHHHHHHHHHHHHHHHHHHHhCCCCceEecccccccccchhHHHHHHHHh
Q 028621 2 FQVAIVVGGGNIFRGAS-AAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHL 80 (206)
Q Consensus 2 ~~~iiVhGGG~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~~~~~~~l~~~l 80 (206)
++++||||||++++++. .++++++++..++.+.++++.+|+.+++.+|+++|+++ + +...+.++.+|
T Consensus 35 ~~vvlV~ggG~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~---~---------~~~~~~i~~ll 102 (226)
T 2j4j_A 35 FRVGIVTGGGSTARRYIKLAREIGIGEAYLDLLGIWASRLNAYLVMFSLQDLAYMH---V---------PQSLEEFIQDW 102 (226)
T ss_dssp CEEEEEECCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHTTSBCSC---C---------CSSHHHHHHHH
T ss_pred CeEEEEECcchHhchhHHHHHHhCCCcccHHHHHHHHHHHHHHHHHHHHHHhCCCC---C---------cCCHHHHHHHH
Confidence 58999999999988864 46779999988999999999999999988899899865 1 11235688999
Q ss_pred hCCCEEEEeCCCCCCCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccccccHHHHhcC----C----cC
Q 028621 81 EKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK----D----LS 152 (206)
Q Consensus 81 ~~g~ipvi~g~~g~~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~----g----~~ 152 (206)
++|.|||++| |.+++++|++|+++|.+|+||+|+|||||||||++||+.+|++++|++++++|+.++ | .+
T Consensus 103 ~~g~ipVi~g--g~~~~~~D~~Aa~lA~~l~Ad~liilTdVdGv~~~dP~~~~~a~~i~~i~~~e~~~l~~~~~~~~ggm 180 (226)
T 2j4j_A 103 SHGKVVVTGG--FQPGQSTAAVAALVAEASSSKTLVVATNVDGVYEKDPRIYADVKLIPHLTTQDLRKILEGSQSVQAGT 180 (226)
T ss_dssp TTSSBEEECC--CSTTSCHHHHHHHHHHHTTCSEEEEEESSSSCBSSCTTTSSSCCBCSEEEHHHHHHHHC---------
T ss_pred HCCCEEEEcC--CCCCCCcHHHHHHHHHhcCCCEEEEeeccceeeCCCCCCCCCCeEccccCHHHHHHHhhcCCCCcCCc
Confidence 9999999999 688999999999999999999999999999999999999999999999999987754 2 33
Q ss_pred --cchHHHHHHHHhCCCcEEEEcCCCCchHHHHhcCCCcceEEec
Q 028621 153 --VMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGG 195 (206)
Q Consensus 153 --~~k~~a~~~a~~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~~ 195 (206)
.+|++++..|.++|++++|+|+++|++|.++|+|+..||+|.+
T Consensus 181 ~~~~k~~a~~~a~~~gi~v~I~~~~~~~~l~~~~~g~~~GT~i~~ 225 (226)
T 2j4j_A 181 YELLDPLAIKIVERSKIRVIVMNYRKLNRIIDILKGEEVSSIIEP 225 (226)
T ss_dssp -CCSCHHHHHHHHHTTCEEEEEEGGGGGGHHHHHTTCSSCEEEEC
T ss_pred cccchHHHHHHHHHCCCeEEEEeCCChhHHHHHHcCCCCceEEee
Confidence 6799999999999999999999999999999999999999975
No 10
>2brx_A Uridylate kinase; UMP kinase, amino acid kinase, phosphoryl group transfer, pyrimidine biosynthesis, transferase; 2.40A {Pyrococcus furiosus} SCOP: c.73.1.3 PDB: 2ji5_A* 2bmu_A* 2bri_A*
Probab=100.00 E-value=2e-36 Score=250.05 Aligned_cols=180 Identities=27% Similarity=0.405 Sum_probs=158.0
Q ss_pred ceEEEEEcCChhhhhhh-hhhcCCCChhhhhHHHHHHHHHHHHHHHHHHHhCCCCceEecccccccccchhHHHHHHHHh
Q 028621 2 FQVAIVVGGGNIFRGAS-AAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHL 80 (206)
Q Consensus 2 ~~~iiVhGGG~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~~~~~~~l~~~l 80 (206)
+++|||||||+++++++ .++++++++..++.+.+.++.+|+.+++..|+++|++.. ++..+.+.++|
T Consensus 55 ~~vViV~GgG~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~l~~~~l~~~g~~~~------------~~~~~~i~~lL 122 (244)
T 2brx_A 55 HEVAVVVGGGKLARKYIEVAEKFNSSETFKDFIGIQITRANAMLLIAALREKAYPVV------------VEDFWEAWKAV 122 (244)
T ss_dssp SEEEEEECCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHGGGBCSSC------------BCSHHHHHHHH
T ss_pred CeEEEEECccHHHhchHHHHHHcCCCcccHHHHHHHHHHHHHHHHHHHHHHcCCCCC------------cCCHHHHHHHH
Confidence 58999999999988853 467799999889999999999999999878988897651 11135678899
Q ss_pred hCCCEEEEeCCCCCCCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccccccHHHHhcC----Cc-----
Q 028621 81 EKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK----DL----- 151 (206)
Q Consensus 81 ~~g~ipvi~g~~g~~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~----g~----- 151 (206)
++|.|||++| |.+++++|++|+++|.+|+||+|+|+|||||||++||+++|++++|+++++.|+.++ |.
T Consensus 123 ~~g~IpVi~g--g~~~~~~D~~Aa~lA~~l~Ad~liilTDVdGVy~~dP~~~p~a~~i~~i~~~e~~~~~~~~g~~~g~m 200 (244)
T 2brx_A 123 QLKKIPVMGG--THPGHTTDAVAALLAEFLKADLLVVITNVDGVYTADPKKDPTAKKIKKMKPEELLEIVGKGIEKAGSS 200 (244)
T ss_dssp HTTCBCEECC--CSTTCCHHHHHHHHHHHTTCSEEEEECSSSSCBSSCTTTCTTCCBCSEECHHHHHHHHHC--------
T ss_pred hCCCEEEEcC--CCCCCCchHHHHHHHHHcCCCEEEEEeCCCccCCCCCCCCCCCeEeeEECHHHHHHHHhccCCCCCCC
Confidence 9999999998 788899999999999999999999999999999999999999999999999988754 32
Q ss_pred CcchHHHHHHHHhCCCcEEEEcCCCCchHHHHhcCCCcceEEec
Q 028621 152 SVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGG 195 (206)
Q Consensus 152 ~~~k~~a~~~a~~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~~ 195 (206)
+.+++.|++.+.+.+++++|+|+++|++|.++|+|+.+||+|.+
T Consensus 201 ~~~~~~A~~~~~~~~~~v~I~ng~~~~~l~~~l~g~~~GT~i~~ 244 (244)
T 2brx_A 201 SVIDPLAAKIIARSGIKTIVIGKEDAKDLFRVIKGDHNGTTIEP 244 (244)
T ss_dssp CCSCHHHHHHHHHHTCCEEEECHHHHTCHHHHHTTCSSSEEECC
T ss_pred cchHHHHHHHHHHCCCeEEEEeCCChhHHHHHHcCCCCceEecC
Confidence 45588888998889999999999999999999999999999974
No 11
>3ll9_A Isopentenyl phosphate kinase; mevalonate biosynthesis isoprenoid, transferase; HET: ADP; 2.15A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=100.00 E-value=1.1e-35 Score=248.87 Aligned_cols=190 Identities=26% Similarity=0.335 Sum_probs=152.5
Q ss_pred ceEEEEEcCChhhhhhhhhhcCCCChhhh-------hHHHHHHHH-----HHHHHHHHHHHhCCCCceEecccccccccc
Q 028621 2 FQVAIVVGGGNIFRGASAAGNSGLDRSSA-------DYIGMLATV-----MNAIFLQATMESIGIPTRVQTAFRMSEVAE 69 (206)
Q Consensus 2 ~~~iiVhGGG~~~~~~~~~~~~~l~~~~~-------~~~~~~~~~-----~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~ 69 (206)
.+++||||||+| ++.+++++++.+++. ++.++..+. +|+.+++ +|+++|++++++++.+...+..
T Consensus 42 ~~~vlVhGGG~~--~~~~~~~~gi~~~~~~~~g~~~~~~G~rvT~~~~~~ln~~l~~-~L~~~G~~a~~l~g~~~~~~~~ 118 (269)
T 3ll9_A 42 SSLMIVHGAGSF--GHPFAGEYRIGSEIENEEDLRRRRFGFALTQNWVKKLNSHVCD-ALLAEGIPAVSMQPSAFIRAHA 118 (269)
T ss_dssp SSEEEEECCGGG--THHHHHHHTTTSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHTTCCEEECCGGGTEEEET
T ss_pred CCEEEEECCcHH--HHHHHHHcCCCcccccCcccccccchhhHHHHHHHHHHHHHHH-HHHHCCCcEEEEcchHcCeEec
Confidence 479999999999 666778889877553 245666665 9997655 5888999999999998754321
Q ss_pred h----hHHHHHHHHhhCCCEEEEeCC-----C--C-CCCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcc
Q 028621 70 P----YIRRRAVRHLEKGRVVIFAAG-----T--G-NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARL 137 (206)
Q Consensus 70 ~----~~~~~l~~~l~~g~ipvi~g~-----~--g-~~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~ 137 (206)
. ...+.++.+|++|.|||++|+ . | .+++++|++|+++|.+|+||+|+|+|||||||++||+.+|++++
T Consensus 119 g~v~~v~~~~i~~lL~~g~ipVi~~~~~~~~~~~g~~~~~~~D~~Aa~lA~~l~Ad~li~ltdv~Gv~~~dp~~~~~a~~ 198 (269)
T 3ll9_A 119 GRISHADISLIRSYLEEGMVPVVYGDVVLDSDRRLKFSVISGDQLINHFSLRLMPERVILGTDVDGVYTRNPKKHPDARL 198 (269)
T ss_dssp TEEEEECCHHHHHHHHTTCEEEEECEEEEBSCTTTSEEEECHHHHHHHHHHHHCCSEEEEEESSSSCBSSCTTTCTTCCB
T ss_pred CeeeeecHHHHHHHHHCCCEEEECCCEEecccccCcceecchHHHHHHHHHHcCCCeEEEecCCCEEEcCCCCcCCcceE
Confidence 1 124678999999999999984 2 2 24689999999999999999999999999999999999999999
Q ss_pred cccccHHHHhcC--------CcCcc--hHHHHHHHHhCCCcEEEEcCCCCchHHHHhcCCCc-ceEEe
Q 028621 138 LDTLTYQEVTSK--------DLSVM--DMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERV-GTLIG 194 (206)
Q Consensus 138 i~~i~~~e~~~~--------g~~~~--k~~a~~~a~~~gi~v~I~~g~~~~~l~~~l~g~~~-GT~i~ 194 (206)
|+++++.|+.++ ..++| |+++|..+.++|++++|+|++.|++|.++|+|+.+ ||+|.
T Consensus 199 i~~i~~~e~~~~l~~~~~~~~tgGM~~Kl~aa~~a~~~Gv~v~I~~g~~~~~l~~~~~g~~~~GT~i~ 266 (269)
T 3ll9_A 199 LDVIGSLDDLESLDGTLNTDVTGGMVGKIRELLLLAEKGVESEIINAAVPGNIERALLGEEVRGTRIT 266 (269)
T ss_dssp CSBCCC-------------------SHHHHHHHHHHHTTCCEEEEESSSTTHHHHHHHTCCCSSEEC-
T ss_pred ccccCHHHHHHHhcccCCCcCcCCcHHHHHHHHHHHhCCCeEEEEeCCCchHHHHHHCCCCCCcEEEE
Confidence 999999887542 12334 99999999999999999999999999999999999 99997
No 12
>2ij9_A Uridylate kinase; structural genomics, protein structure initiative, P nysgxrc; 2.90A {Archaeoglobus fulgidus} SCOP: c.73.1.3
Probab=100.00 E-value=5.4e-35 Score=237.51 Aligned_cols=177 Identities=36% Similarity=0.472 Sum_probs=152.7
Q ss_pred ceEEEEEcCChhhhhhh-hhhcCCCChhhhhHHHHHHHHHHHHHHHHHHHhCCCCceEecccccccccchhHHHHHHHHh
Q 028621 2 FQVAIVVGGGNIFRGAS-AAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHL 80 (206)
Q Consensus 2 ~~~iiVhGGG~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~~~~~~~l~~~l 80 (206)
+++|||||||+++++.+ .++++++++..++.+.+.++.+|+.+++.+++. ++.. ++...+.++.+|
T Consensus 33 ~~vvlV~ggG~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~l~~~~~~~-~~~~------------~~~~~~~i~~ll 99 (219)
T 2ij9_A 33 NQVFVVVGGGKLAREYIKSARELGASETFCDYIGIAATRLNAMLLISAIPS-AAKK------------VPVDFMEAEELS 99 (219)
T ss_dssp SEEEEEECCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHCTT-BCSS------------CCSSHHHHHHHH
T ss_pred CEEEEEECcchHhcchHHHHHHcCCCccchHHHHHHHHHHHHHHHHHHHHH-hcCC------------CcCCHHHHHHHH
Confidence 58999999999988853 467799999999999999999999999987653 3211 111236688999
Q ss_pred hCCCEEEEeCCCCCCCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccccccHHHHhcC----Cc-----
Q 028621 81 EKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK----DL----- 151 (206)
Q Consensus 81 ~~g~ipvi~g~~g~~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~----g~----- 151 (206)
++|.|||++| |.+++++|++|+++|.+|+||+|+|+|||||||++||+.+|++++|+++++.|+.++ |.
T Consensus 100 ~~g~ipVi~~--g~~~~~~D~~Aa~lA~~l~Ad~li~lTdVdGv~~~dP~~~~~a~~i~~i~~~e~~~~~~~~g~~~g~~ 177 (219)
T 2ij9_A 100 KLYRVVVMGG--TFPGHTTDATAALLAEFIKADVFINATNVDGVYSADPKSDTSAVKYDRLSPQQLVEIVSRSSAKAGTN 177 (219)
T ss_dssp TTCSEEEECC--CSSSSCTHHHHHHHHHHTTCSEEEEEESSSSCBCSSCSSSSSCCBCSEECHHHHHHHTCC-----CCC
T ss_pred HCCCEEEEeC--CCCCCCchHHHHHHHHHcCCCeEEEeeCCCceecCCCCCCCCCeEeeeeCHHHHHHHHhcCCCCCCCc
Confidence 9999999999 788899999999999999999999999999999999999999999999999988754 22
Q ss_pred CcchHHHHHHHHhCCCcEEEEcCCCCchHHHHhcCCCcceEEe
Q 028621 152 SVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIG 194 (206)
Q Consensus 152 ~~~k~~a~~~a~~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~ 194 (206)
+.+++.|+..+.+.+++++|+|+ +|++|.++|+|+++||+|.
T Consensus 178 ~~~~~~a~~~~~~~~~~v~I~~g-~~~~l~~~~~g~~~GT~i~ 219 (219)
T 2ij9_A 178 VVIDLLAAKIIERSKIKTYVILG-TPENIMKAVKGEAVGTVIA 219 (219)
T ss_dssp CCSCHHHHHHHHHHTCCEEEEEC-CHHHHHHHHTTCCCSEEEC
T ss_pred cchHHHHHHHHHHCCCeEEEEEC-CHhHHHHHHcCCCCCeEeC
Confidence 34588899999999999999999 9999999999999999984
No 13
>3ll5_A Gamma-glutamyl kinase related protein; alternate mevalonate pathway, isopentenyl phsophate kinase, beta-alpha sandwich fold; HET: MSE ADP IPE ATP IP8; 1.99A {Thermoplasma acidophilum} PDB: 3lkk_A*
Probab=100.00 E-value=1.3e-34 Score=239.93 Aligned_cols=187 Identities=22% Similarity=0.296 Sum_probs=153.6
Q ss_pred ceEE-EEEcCChhhhhhhhhhcCCCChhh--hhHHHHHHH-----HHHHHHHHHHHHhCCCCceEecccccccccchhHH
Q 028621 2 FQVA-IVVGGGNIFRGASAAGNSGLDRSS--ADYIGMLAT-----VMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIR 73 (206)
Q Consensus 2 ~~~i-iVhGGG~~~~~~~~~~~~~l~~~~--~~~~~~~~~-----~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~~~~~ 73 (206)
++++ ||||||++ ++.+++++++++.+ .+..++..+ ++|+.++. +|+++|+++.++++.+...+.++ ..
T Consensus 40 ~~vv~lVhGGG~~--~~~~~~~~gi~~~~~~~d~~gl~~t~~~~~~ln~~~v~-~l~~~G~~a~~l~~~~~~~~g~v-~~ 115 (249)
T 3ll5_A 40 EDLVCVVHGGGSF--GHIKAMEFGLPGPKNPRSSIGYSIVHRDMENLDLMVID-AMIEMGMRPISVPISALRYDGRF-DY 115 (249)
T ss_dssp TTEEEEEECCGGG--THHHHHHHTCSEECCHHHHHHHHHHHHHHHHHHHHHHH-HHHHTTCCEEECCGGGSCBSSSB-CC
T ss_pred CceEEEEECccHH--HHHHHHHhCCCcCCCccccccHHHHHHHHHHHHHHHHH-HHHHCCCcEEEEcHHHcccccEE-cH
Confidence 5789 99999999 55567889998876 355555444 89999985 57889999999999988666655 44
Q ss_pred HHHHHHhhCCCEEEEeCC-----CC-CCCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccccccHHHHh
Q 028621 74 RRAVRHLEKGRVVIFAAG-----TG-NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVT 147 (206)
Q Consensus 74 ~~l~~~l~~g~ipvi~g~-----~g-~~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~~i~~~e~~ 147 (206)
+.++.+|++|.|||++|+ .+ .+++++|++|+++|.+|+||+|+|+|||||||++||+.+|+++++++++. ++.
T Consensus 116 ~~i~~ll~~g~ipVi~~~~~~~~~~~~~~~~~D~~Aa~lA~~l~Ad~li~ltdvdGv~~~dp~~~~~a~~i~~i~~-~~~ 194 (249)
T 3ll5_A 116 TPLIRYIDAGFVPVSYGDVYIKDEHSYGIYSGDDIMADMAELLKPDVAVFLTDVDGIYSKDPKRNPDAVLLRDIDT-NIT 194 (249)
T ss_dssp HHHHHHHHTTCEEEEECEEEEEETTEEEEECHHHHHHHHHHHHCCSEEEEEESSSSCBSSCTTTCTTCCBCCEECC-CC-
T ss_pred HHHHHHHHCCCEEEECCCEEEcCCCceeeecHHHHHHHHHHhcCCCEEEEEeCCCccCCCCCCCCCCcEEHHHHHH-HHh
Confidence 788999999999999974 12 24789999999999999999999999999999999999999999999952 222
Q ss_pred c-----CCcCc--chHHHHHHH-HhCCCcEEEEcCCCCchHHHHhcCCCc-ceEEe
Q 028621 148 S-----KDLSV--MDMTAITLC-QENNIPVVVFNLNQPGNIAKAIQGERV-GTLIG 194 (206)
Q Consensus 148 ~-----~g~~~--~k~~a~~~a-~~~gi~v~I~~g~~~~~l~~~l~g~~~-GT~i~ 194 (206)
. ...++ .|+++|..+ .++|++++|+|+++|++|.+ |.|+.+ ||+|+
T Consensus 195 ~~~~~~~~tGgM~~Kl~aA~~a~~~~Gv~v~I~~g~~~~~l~~-l~g~~~~GT~i~ 249 (249)
T 3ll5_A 195 FDRVQNDVTGGIGKKFESMVKMKSSVKNGVYLINGNHPERIGD-IGKESFIGTVIR 249 (249)
T ss_dssp ------------HHHHHHHHHHHTTCTTCEEEEETTSGGGGGG-TTSTTCCSEEEC
T ss_pred cccCCCeeECCHHHHHHHHHHHHHhcCCEEEEEeCCChhHHHH-hCCCCCCCEEeC
Confidence 1 12334 499999998 89999999999999999999 999988 99984
No 14
>2ogx_A Molybdenum storage protein subunit alpha; open alpha/beta structure, metal binding protein; HET: ATP; 1.60A {Azotobacter vinelandii}
Probab=100.00 E-value=2.7e-33 Score=235.19 Aligned_cols=187 Identities=25% Similarity=0.286 Sum_probs=157.7
Q ss_pred ceEEEEEcCChhhhhhh-hhhcCCCChhhhhHHHHHHHHHHHHHHHHHHHhCCCCceEecccccccccchhHHHHHHHHh
Q 028621 2 FQVAIVVGGGNIFRGAS-AAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHL 80 (206)
Q Consensus 2 ~~~iiVhGGG~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~~~~~~~l~~~l 80 (206)
+++|||||||++++.+. ...+.++++..++.+++.++++|..+++.++.+.|++++.++ ...+.++.+|
T Consensus 72 ~~vVlV~GGg~~~~~~~~~~~~~gl~~~~l~~v~~~~~~~n~~l~~~ll~~~g~~~v~~~----------~~~~~i~~lL 141 (276)
T 2ogx_A 72 HRLLILTGAGVRARHVFSVGLDLGLPVGSLAPLAASEAGQNGHILAAMLASEGVSYVEHP----------TVADQLAIHL 141 (276)
T ss_dssp CEEEEEECCTHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHGGGTCCBCCHH----------HHHHHHHHHH
T ss_pred CeEEEEECcHHHHHHHHhccCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccc----------ChHHHHHHHH
Confidence 58999999999977654 234467888888888888899999999988877888764222 1246788999
Q ss_pred hCCCEEEEeCCC--------C--CCCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCC--CCCCCcccccccHHHHhc
Q 028621 81 EKGRVVIFAAGT--------G--NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPR--RNPNARLLDTLTYQEVTS 148 (206)
Q Consensus 81 ~~g~ipvi~g~~--------g--~~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~--~~~~a~~i~~i~~~e~~~ 148 (206)
++|.|||++|+. | .+++++|++|+++|.+|+||+|+|+|||||||++||+ .+|++++|+++++.|+.+
T Consensus 142 ~~g~IpVi~~~~~~~~~e~~G~~~~~~~~D~~Aa~lA~~l~Ad~LiilTDVdGvy~~dP~~~~~~~a~~i~~i~~~e~~~ 221 (276)
T 2ogx_A 142 SATRAVVGSAFPPYHHHEFPGSRIPPHRADTGAFLLADAFGAAGLTIVENVDGIYTADPNGPDRGQARFLPETSATDLAK 221 (276)
T ss_dssp HHSSEEEEESSCTTGGGCCSSSSSCSSCHHHHHHHHHHHHTCSEEEEEESSSSEESSCTTSTTGGGCCEESEEEHHHHHT
T ss_pred hCCCEEEEcCCcccccccccCCcCCCCChHHHHHHHHHHcCCCEEEEEeCCCccCCCCCCccCCCCCeEcceeCHHHHHH
Confidence 999999999951 2 2589999999999999999999999999999999998 889999999999999988
Q ss_pred C-CcCcchHHHHHHHH--hCCCcEEEEcCCCCchHHHHhcCCCcceEEecCCC
Q 028621 149 K-DLSVMDMTAITLCQ--ENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGTWN 198 (206)
Q Consensus 149 ~-g~~~~k~~a~~~a~--~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~~~~~ 198 (206)
+ +.++|++++...+. +.+++++|+|+++|++|.++|+|+..||+|.++..
T Consensus 222 ~~g~ggM~~K~~~~~~~~~~~~~v~I~~g~~~~~l~~~l~g~~~GT~i~~~~~ 274 (276)
T 2ogx_A 222 SEGPLPVDRALLDVMATARHIERVQVVNGLVPGRLTAALRGEHVGTLIRTGVR 274 (276)
T ss_dssp SCSCCSSCHHHHHHHHTCSSCCEEEEEETTSTTHHHHHHTTCCCSEEEECSCC
T ss_pred HhCcCChHHHHHHHHHHhcCCCeEEEEECCCccHHHHHHcCCCCceEEccCCC
Confidence 7 67788776665555 55789999999999999999999999999987643
No 15
>2ap9_A NAG kinase, acetylglutamate kinase, AGK; structural genomics, protein structure initiative, NYSGXRC, PSI; 2.80A {Mycobacterium tuberculosis} SCOP: c.73.1.2
Probab=100.00 E-value=3.6e-32 Score=230.66 Aligned_cols=190 Identities=16% Similarity=0.162 Sum_probs=152.7
Q ss_pred ceEEEEEcCChhhhhhhhhhcCCCCh-----------hhhhHHHHH-HHHHHHHHHHHHHHhCCCCceEeccccccccc-
Q 028621 2 FQVAIVVGGGNIFRGASAAGNSGLDR-----------SSADYIGML-ATVMNAIFLQATMESIGIPTRVQTAFRMSEVA- 68 (206)
Q Consensus 2 ~~~iiVhGGG~~~~~~~~~~~~~l~~-----------~~~~~~~~~-~~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~- 68 (206)
+++|||||||++++.. .++++++. ..++.+.+. ..++|..+ ..+|+++|++++++++.+...+.
T Consensus 58 ~~vViVhGgG~~i~~~--~~~~~~~~~~~~g~R~t~~~~l~~~~~~~~G~l~~~l-~~~L~~~g~~av~lt~~d~~~~~~ 134 (299)
T 2ap9_A 58 IHPVVVHGGGPQITAM--LRRLGIEGDFKGGFRVTTPEVLDVARMVLFGQVGREL-VNLINAHGPYAVGITGEDAQLFTA 134 (299)
T ss_dssp CEEEEEECCSHHHHHH--HHHHTCCCCCSSSSCCBCHHHHHHHHHHHHHTHHHHH-HHHHTTSSSCEEEEETTGGGCEEE
T ss_pred CcEEEEECCcHHHHHH--HHHcCCcccccCCcccCCHHHHHHHHHHHhhHHHHHH-HHHHHhCCCCceEechhHCCEEEE
Confidence 5899999999997653 45556543 234555554 34688875 56789999999999988743221
Q ss_pred ch--------------------hHHHHHHHHhhCCCEEEEeCC----CCCCC-CCcHHHHHHHHHhcCCcEEEEeeccCc
Q 028621 69 EP--------------------YIRRRAVRHLEKGRVVIFAAG----TGNPF-FTTDTAAALRCAEINAEVVLKATNVDG 123 (206)
Q Consensus 69 ~~--------------------~~~~~l~~~l~~g~ipvi~g~----~g~~~-~~sD~~A~~lA~~l~A~~li~ltdV~G 123 (206)
++ ...+.++.+|++|.|||++|+ .|..+ +++|++|+++|.+|+||+|+|||||||
T Consensus 135 ~~~~~~~~~~~~d~g~~g~v~~v~~~~i~~lL~~g~IpVv~~v~~~~~G~~~~l~~D~~Aa~lA~~l~Ad~liilTDVdG 214 (299)
T 2ap9_A 135 VRRSVTVDGVATDIGLVGDVDQVNTAAMLDLVAAGRIPVVSTLAPDADGVVHNINADTAAAAVAEALGAEKLLMLTDIDG 214 (299)
T ss_dssp EECCBCSSSCCBCCBSEEEEEEECHHHHHHHHHTTCEEEEESEEECTTCCEEEECHHHHHHHHHHHTTCSEEEEEESSSS
T ss_pred EecccccccccCCCCcceeEEEecHHHHHHHHhCCCeEEECCeeECCCCCEEEECHHHHHHHHHHHcCCCEEEEEeCChh
Confidence 00 125788999999999999985 34444 599999999999999999999999999
Q ss_pred cccCCCCCCCCCcccccccHHHHhcC---CcCcc--hHHHHHHHHhCCCc-EEEEcCCCCchH-HHHhcCCCcceEEecC
Q 028621 124 VYDDNPRRNPNARLLDTLTYQEVTSK---DLSVM--DMTAITLCQENNIP-VVVFNLNQPGNI-AKAIQGERVGTLIGGT 196 (206)
Q Consensus 124 v~~~dP~~~~~a~~i~~i~~~e~~~~---g~~~~--k~~a~~~a~~~gi~-v~I~~g~~~~~l-~~~l~g~~~GT~i~~~ 196 (206)
||++||+ ++++|++++++|+.++ +.++| |++|+..+.++|++ ++|+|+++|++| .++|+|+++||+|.++
T Consensus 215 V~~~dP~---~~~~i~~is~~e~~~l~~~~~ggM~~Kl~aa~~a~~~gv~~v~I~~g~~p~~ll~~l~~~~~~GT~i~~~ 291 (299)
T 2ap9_A 215 LYTRWPD---RDSLVSEIDTGTLAQLLPTLELGMVPKVEACLRAVIGGVPSAHIIDGRVTHCVLVELFTDAGTGTKVVRG 291 (299)
T ss_dssp EETTTTC---TTCEESEEEHHHHHHHGGGSCTTTHHHHHHHHHHHHHTCSEEEEEETTSTTHHHHHHHSCCCCSEEEECC
T ss_pred hhcCCCC---CCcChhhcCHHHHHHHHHhhcCchHHHHHHHHHHHHcCCCEEEEecCCCCcHHHHHHhcCCCCcEEEecC
Confidence 9999996 4689999999988764 45566 88999999999998 999999999997 7999999999999875
Q ss_pred C
Q 028621 197 W 197 (206)
Q Consensus 197 ~ 197 (206)
.
T Consensus 292 ~ 292 (299)
T 2ap9_A 292 E 292 (299)
T ss_dssp C
T ss_pred C
Confidence 4
No 16
>2ogx_B Molybdenum storage protein subunit beta; open alpha/beta structure, metal binding protein; HET: ATP; 1.60A {Azotobacter vinelandii}
Probab=99.98 E-value=5.7e-31 Score=220.32 Aligned_cols=183 Identities=25% Similarity=0.361 Sum_probs=145.2
Q ss_pred ceEEEEEcCChhhhhhh-hhhcCCCChhhhhHHHHHHHHHHHHHHHHHHHhCCCCceEecccccccccchhHHHHHHHHh
Q 028621 2 FQVAIVVGGGNIFRGAS-AAGNSGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHL 80 (206)
Q Consensus 2 ~~~iiVhGGG~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~~~~~~~l~~~l 80 (206)
+++|||||||++.++.. ...+.+++....+.....+..++..+++.+|+++|++.+ +..+ .+.++++|
T Consensus 70 ~~vVlVhGGg~~~~~~~~~~~~~g~~~~~~~~~~~~a~G~~~l~~~~~l~~~G~~~v--t~~d---------~~~i~~lL 138 (270)
T 2ogx_B 70 HKLLIGTGAGTRARHLYSIAAGLGLPAGVLAQLGSSVADQNAAMLGQLLAKHGIPVV--GGAG---------LSAVPLSL 138 (270)
T ss_dssp CEEEEEECCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHGGGTCCBC--CSST---------TCHHHHHC
T ss_pred CcEEEEECChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHhcCCcee--cHhh---------HHHHHHHH
Confidence 57999999999865532 122457777777777777778999999888888898732 1111 13478899
Q ss_pred hCCCEEEEeCCCC------------CCCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccccccHHHHhc
Q 028621 81 EKGRVVIFAAGTG------------NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTS 148 (206)
Q Consensus 81 ~~g~ipvi~g~~g------------~~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~~i~~~e~~~ 148 (206)
++|.|||++|+.| ++++++|++|+++|.+++||+|+++|||||||++||+.+|++++|++++++|+.+
T Consensus 139 ~~g~ipVi~g~~g~~~~~~~~~~g~~~~~~~D~~Aa~lA~~l~Ad~Li~lTDVdGvy~~dP~~~~~a~~i~~i~~~e~~~ 218 (270)
T 2ogx_B 139 AEVNAVVFSGMPPYKLWMRPAAEGVIPPYRTDAGCFLLAEQFGCKQMIFVKDEDGLYTANPKTSKDATFIPRISVDEMKA 218 (270)
T ss_dssp TTCCEEEEECSCTTGGGCCCCSSSSSCSSCHHHHHHHHHHHHTCSEEEEEESSSSEESSCSSSCTTCCEESEEEHHHHHH
T ss_pred hCCCEEEEeCCccccccccccccccCCCCCcHHHHHHHHHhcCCCEEEEEeCCCcccCCCCCCCCCCeEcceeCHHHHHH
Confidence 9999999998622 3569999999999999999999999999999999999999999999999999887
Q ss_pred CC--cCcchHHHHHHHH--hCCCcEEEEcCCCCchHHHHhcCCCcceEEec
Q 028621 149 KD--LSVMDMTAITLCQ--ENNIPVVVFNLNQPGNIAKAIQGERVGTLIGG 195 (206)
Q Consensus 149 ~g--~~~~k~~a~~~a~--~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~~ 195 (206)
+. ...++......+. +.+++++|+|+++|++|.++|+|+.+||+|.+
T Consensus 219 ~~~~g~~~~ggm~~kl~aa~~~~~v~I~~g~~~~~l~~~l~g~~~GT~i~~ 269 (270)
T 2ogx_B 219 KGLHDSILEFPVLDLLQSAQHVREVQVVNGLVPGNLTRALAGEHVGTIITA 269 (270)
T ss_dssp TTCCCTTSCHHHHHHHHHCSSCCEEEEEETTSTTHHHHHHTTCCCSEEEEC
T ss_pred HhcCCCcccHHHHHHHHHhhcCCcEEEEeCCCchHHHHHHcCCCCCeEecC
Confidence 52 1134333222222 35679999999999999999999999999986
No 17
>2rd5_A Acetylglutamate kinase-like protein; protein-protein complex, regulation of arginine biosynthesis nitrogen metabolism, kinase, transferase, transcription; HET: ARG ADP NLG ATP; 2.51A {Arabidopsis thaliana}
Probab=99.98 E-value=1.1e-31 Score=227.47 Aligned_cols=188 Identities=15% Similarity=0.243 Sum_probs=149.5
Q ss_pred ceEEEEEcCChhhhhhhhhhcCCCCh-----------hhhhHHHHHH-HHHHHHHHHHHHHhCCCCceEeccccccccc-
Q 028621 2 FQVAIVVGGGNIFRGASAAGNSGLDR-----------SSADYIGMLA-TVMNAIFLQATMESIGIPTRVQTAFRMSEVA- 68 (206)
Q Consensus 2 ~~~iiVhGGG~~~~~~~~~~~~~l~~-----------~~~~~~~~~~-~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~- 68 (206)
+++|||||||++++. ..++++++. ..++.+.+.. ..+|..+ ..+|+++|++++++++.+...+.
T Consensus 69 ~~vViVhGgG~~i~~--~~~~~~~~~~~~~g~R~t~~~~l~~~~~~~~G~~n~~l-~~~l~~~g~~a~~l~~~~~~~l~~ 145 (298)
T 2rd5_A 69 LRPILVHGGGPDINR--YLKQLNIPAEFRDGLRVTDATTMEIVSMVLVGKVNKNL-VSLINAAGATAVGLSGHDGRLLTA 145 (298)
T ss_dssp CEEEEEECCHHHHHH--HHHHTTCCCCEETTEECBCHHHHHHHHHHHHHTHHHHH-HHHHHHTTSCEEEEETTGGGCEEE
T ss_pred CCEEEEECCcHHHHH--HHHHcCCCccccCCcccCCHHHHHHHHHHHhchHHHHH-HHHHHhCCCCccccChHHCCEEEE
Confidence 589999999999755 445566543 3455554543 5778765 44688999999998876532211
Q ss_pred -------------ch--hHHHHHHHHhhCCCEEEEeCC----CCCCC-CCcHHHHHHHHHhcCCcEEEEeeccCccccCC
Q 028621 69 -------------EP--YIRRRAVRHLEKGRVVIFAAG----TGNPF-FTTDTAAALRCAEINAEVVLKATNVDGVYDDN 128 (206)
Q Consensus 69 -------------~~--~~~~~l~~~l~~g~ipvi~g~----~g~~~-~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~d 128 (206)
.. ...+.++.+|++|.|||++|+ .|..+ +++|++|+++|.+|+||+|+|+|||||||++|
T Consensus 146 ~~~~~~~d~g~~g~v~~v~~~~i~~lL~~g~IpVi~~v~~~~~G~~~~i~~D~~Aa~lA~~l~Ad~LiilTdVdGVy~~d 225 (298)
T 2rd5_A 146 RPVPNSAQLGFVGEVARVDPSVLRPLVDYGYIPVIASVAADDSGQAYNINADTVAGELAAALGAEKLILLTDVAGILENK 225 (298)
T ss_dssp EECTTHHHHBSEEEEEEECGGGHHHHHHTTCEEEEESEEECTTSCEEEECHHHHHHHHHHHHTCSEEEEEESSSSEESSS
T ss_pred EeCCccccCCcceEEEEECHHHHHHHHhCCCEEEEcCeeECCCCCEEEECHHHHHHHHHHHcCCCEEEEEeCCcCeecCC
Confidence 10 013678899999999999985 34444 59999999999999999999999999999999
Q ss_pred CCCCCCCcccccccHHHHhcC-----CcCcc--hHHHHHHHHhCCCc-EEEEcCCCCchH-HHHhcCCCcceEEec
Q 028621 129 PRRNPNARLLDTLTYQEVTSK-----DLSVM--DMTAITLCQENNIP-VVVFNLNQPGNI-AKAIQGERVGTLIGG 195 (206)
Q Consensus 129 P~~~~~a~~i~~i~~~e~~~~-----g~~~~--k~~a~~~a~~~gi~-v~I~~g~~~~~l-~~~l~g~~~GT~i~~ 195 (206)
|+ | +++|++++++|+.++ ..++| |++|+..+.++|++ ++|+|++.|++| .++|++++.||+|.+
T Consensus 226 p~--~-a~~i~~is~~e~~~~~~~g~~~gGM~~Kl~aa~~a~~~gv~~v~I~~g~~~~~ll~~l~~~~~~GT~i~~ 298 (298)
T 2rd5_A 226 ED--P-SSLIKEIDIKGVKKMIEDGKVAGGMIPKVKCCIRSLAQGVKTASIIDGRRQHSLLHEIMSDEGAGTMITG 298 (298)
T ss_dssp SC--T-TSEECEEEHHHHHHHHHTTSSCTTHHHHHHHHHHHHHTTCSEEEEEETTSTTHHHHHHHSSSCSEEEEEC
T ss_pred CC--C-CCCcccCCHHHHHHHHHCCCCCCchHHHHHHHHHHHHcCCCeEEEecCCCCchHHHHHhcCCCCceEEeC
Confidence 96 4 899999999988754 23445 88999999999998 999999999999 799999999999974
No 18
>2v5h_A Acetylglutamate kinase; amino-acid biosynthesis, transcription regulation, transfera cyanobacteria, transcription; HET: NLG; 2.75A {Synechococcus elongatus} PDB: 2jj4_A*
Probab=99.98 E-value=1.3e-31 Score=229.20 Aligned_cols=193 Identities=18% Similarity=0.242 Sum_probs=150.6
Q ss_pred ceEEEEEcCChhhhhhhhhhcCCCCh-----------hhhhHHHHH-HHHHHHHHHHHHHHhCCCCceEecccccc----
Q 028621 2 FQVAIVVGGGNIFRGASAAGNSGLDR-----------SSADYIGML-ATVMNAIFLQATMESIGIPTRVQTAFRMS---- 65 (206)
Q Consensus 2 ~~~iiVhGGG~~~~~~~~~~~~~l~~-----------~~~~~~~~~-~~~~~~~ll~~~l~~~gi~a~~l~~~~~~---- 65 (206)
+++|||||||++++. ..++++++. ..++.+.+. ...+|..++ .+|+++|++++++++.+..
T Consensus 82 ~~vVlVhGgG~~i~~--~~~~~g~~~~~~~g~Rvt~~~~l~~~~~~~~G~in~~l~-~~L~~~g~~a~gl~~~~a~~l~a 158 (321)
T 2v5h_A 82 MRPVVVHGGGPEINA--WLGRVGIEPQFHNGLRVTDADTMEVVEMVLVGRVNKDIV-SRINTTGGRAVGFCGTDGRLVLA 158 (321)
T ss_dssp CEEEEEECCHHHHHH--HHHHTTCCCCBSSSSBCBCHHHHHHHHHHHHHTHHHHHH-HHHHHHTCCEEEECTTGGGSEEE
T ss_pred CEEEEEECCHHHHHH--HHHHcCCCccccCCcccCCHHHHHHHHHHHhChHHHHHH-HHHHhCCCCeeeeChhhccEEEe
Confidence 589999999999765 445677653 334555443 357888654 4688899999988876432
Q ss_pred ---------cccchh--HHHHHHHHhhCCCEEEEeCC----CCCCC-CCcHHHHHHHHHhcCCcEEEEeeccCccccCCC
Q 028621 66 ---------EVAEPY--IRRRAVRHLEKGRVVIFAAG----TGNPF-FTTDTAAALRCAEINAEVVLKATNVDGVYDDNP 129 (206)
Q Consensus 66 ---------~v~~~~--~~~~l~~~l~~g~ipvi~g~----~g~~~-~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP 129 (206)
+..... ..+.++.+|++|.|||+++. .|..+ +++|++|+++|.+|+||+|+|+|||||||++||
T Consensus 159 ~~~~~~d~g~~g~v~~v~~~~i~~lL~~g~IpVi~~v~~~~~G~~~~i~~D~~Aa~lA~~l~Ad~LiilTDVdGVy~~dp 238 (321)
T 2v5h_A 159 RPHDQEGIGFVGEVNSVNSEVIEPLLERGYIPVISSVAADENGQSFNINADTVAGEIAAALNAEKLILLTDTRGILEDPK 238 (321)
T ss_dssp EECSSCSSBSBEEEEEECGGGTHHHHHTTCEEEEESEEECTTSCEEECCHHHHHHHHHHHTTCSEEEEEESSSSCBSSTT
T ss_pred ecCCCccccccceeEEecHHHHHHHHHCCCeEEEeCceECCCCCEEEeCHHHHHHHHHHHcCCCEEEEeeCCCceEcCCC
Confidence 111110 14678899999999999974 34455 499999999999999999999999999999999
Q ss_pred CCCCCCcccccccHHHHhcC-----CcCcc--hHHHHHHHHhCCCc-EEEEcCCCCchH-HHHhcCCCcceEEecCCCCc
Q 028621 130 RRNPNARLLDTLTYQEVTSK-----DLSVM--DMTAITLCQENNIP-VVVFNLNQPGNI-AKAIQGERVGTLIGGTWNST 200 (206)
Q Consensus 130 ~~~~~a~~i~~i~~~e~~~~-----g~~~~--k~~a~~~a~~~gi~-v~I~~g~~~~~l-~~~l~g~~~GT~i~~~~~~~ 200 (206)
+ ++++|++++++|+.++ +.++| |++|+..|.++|++ ++|+|++.|++| .++|+++..||+|.++.++.
T Consensus 239 ~---~a~~i~~is~~e~~~l~~~g~~~gGM~~Kl~Aa~~a~~~gv~~v~I~~g~~~~~ll~~l~~~~~~GT~I~~~~~~~ 315 (321)
T 2v5h_A 239 R---PESLIPRLNIPQSRELIAQGIVGGGMIPKVDCCIRSLAQGVRAAHIIDGRIPHALLLEIFTDAGIGTMIVGSGYHE 315 (321)
T ss_dssp C---TTCBCCEEEHHHHHHHHHTTSSCTTHHHHHHHHHHHHHTTCSEEEEEETTSTTHHHHHHHCCCCSEEEEECC----
T ss_pred C---CCeeeeEEcHHHHHHHHhCCCCcCcHHHHHHHHHHHHHcCCCEEEEEeCCCCchHHHHHhcCCCCceEEECCcccc
Confidence 6 4899999999988754 24456 88999999999998 999999999998 68999999999999876654
No 19
>3k4o_A Isopentenyl phosphate kinase; small molecule kinase, ATP-binding, transferase, methanocald jannaschii, isopentenyl monophosphate; 2.05A {Methanocaldococcus jannaschii} PDB: 3k4y_A* 3k52_A* 3k56_A*
Probab=99.98 E-value=3e-32 Score=227.68 Aligned_cols=182 Identities=23% Similarity=0.265 Sum_probs=142.7
Q ss_pred ceEEEEEcCChhhhhhhhhhcCCCChh---hhhH--HHHHHHH-----HHHHHHHHHHHhCCCCceEeccccccccc--c
Q 028621 2 FQVAIVVGGGNIFRGASAAGNSGLDRS---SADY--IGMLATV-----MNAIFLQATMESIGIPTRVQTAFRMSEVA--E 69 (206)
Q Consensus 2 ~~~iiVhGGG~~~~~~~~~~~~~l~~~---~~~~--~~~~~~~-----~~~~ll~~~l~~~gi~a~~l~~~~~~~v~--~ 69 (206)
+++|||||||++ ++.+++++|++++ ..+. .++..+. +|+.+.+ +|+++|+++.++++.++..+. .
T Consensus 53 ~~vVlVhGGG~~--~~~~~~~lgi~~~~~~~~~~~~~G~r~T~~a~~~ln~~l~~-~l~~~G~~a~~l~~~d~~~~~~g~ 129 (266)
T 3k4o_A 53 IKLILVHGGGAF--GHPVAKKYLKIEDGKKIFINMEKGFWEIQRAMRRFNNIIID-TLQSYDIPAVSIQPSSFVVFGDKL 129 (266)
T ss_dssp CEEEEEECCHHH--HHHHHGGGEEECSSSEEECCHHHHHHHHHHHHHHHHHHHHH-HHHTTTCCEEEECGGGTCEESSSC
T ss_pred CCEEEEeCchHH--HHHHHHHcCCCcccCcccccccCceeHHHHHHHHHHHHHHH-HHHHCCCcEEEeeHHHcCcccCce
Confidence 689999999999 5546788888776 1222 5555554 9998654 688899999999999876544 2
Q ss_pred hhHHHHHHHHhhCCCEEEEeCC-----C-CCCCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccccccH
Q 028621 70 PYIRRRAVRHLEKGRVVIFAAG-----T-GNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTY 143 (206)
Q Consensus 70 ~~~~~~l~~~l~~g~ipvi~g~-----~-g~~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~~i~~ 143 (206)
....+.++.+|++|.|||++|+ . +.+++++|++|+++|.+|+||+|+|+||||||| +||+ ++++++.
T Consensus 130 ~v~~~~i~~lL~~g~ipVi~~~~~~~~~g~~~~~~~D~~Aa~lA~~l~Ad~li~ltdvdGv~-~d~~------~i~~~~~ 202 (266)
T 3k4o_A 130 IFDTSAIKEMLKRNLVPVIHGDIVIDDKNGYRIISGDDIVPYLANELKADLILYATDVDGVL-IDNK------PIKRIDK 202 (266)
T ss_dssp BCCCHHHHHHHHTTCEEEEECEEEEESSSCEEEECHHHHHHHHHHHHTCSEEEEEESSSSSB-SSSS------BCSEECT
T ss_pred EecHHHHHHHHHCCCEEEEeCCEEEcCCCCeeeeCHHHHHHHHHHHcCCCEEEEEecCCeEE-eCCe------ecCcCCH
Confidence 2224788999999999999984 1 245799999999999999999999999999999 7775 4555543
Q ss_pred HH---Hhc--------CCcCcc--hHHHHHHHHhCCCcEEEEcCCCCchHHHHhcCCCcceEEecC
Q 028621 144 QE---VTS--------KDLSVM--DMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGT 196 (206)
Q Consensus 144 ~e---~~~--------~g~~~~--k~~a~~~a~~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~~~ 196 (206)
.| +.+ .+.++| |++++..+.+ +++|+|+++|++|.++|+|+++||+|.++
T Consensus 203 ~e~~~l~~~~~~~~~~~~tGGM~~Kv~aa~~a~~---~v~I~~g~~~~~l~~~l~g~~~GT~i~~~ 265 (266)
T 3k4o_A 203 NNIYKILNYLSGSNSIDVTGGMKYKIEMIRKNKC---RGFVFNGNKANNIYKALLGEVEGTEIDFS 265 (266)
T ss_dssp TTHHHHHHHHHSTTCSCCSSHHHHHHHHHHHTTC---EEEEEETTSTTHHHHHHTTCCCSEEEECC
T ss_pred HHHHHHHHHhccccCCcccCCHHHHHHHHHHHhc---CEEEEeCCCccHHHHHhCCCCCceEEEeC
Confidence 22 211 123444 9999988777 99999999999999999999999999985
No 20
>2ako_A Glutamate 5-kinase; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics, nysgxrc; HET: ADP; 2.20A {Campylobacter jejuni} SCOP: c.73.1.3
Probab=99.97 E-value=8.8e-31 Score=216.81 Aligned_cols=189 Identities=14% Similarity=0.109 Sum_probs=142.8
Q ss_pred ceEEEEEcCChhhhhhhhhhcCCCCh-hhhhHH--HHHHHHHHHHHHHHHHHhCCCCceEecccccccccch-hH--HHH
Q 028621 2 FQVAIVVGGGNIFRGASAAGNSGLDR-SSADYI--GMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEP-YI--RRR 75 (206)
Q Consensus 2 ~~~iiVhGGG~~~~~~~~~~~~~l~~-~~~~~~--~~~~~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~~-~~--~~~ 75 (206)
+++|||||||... ..++++++. ...+.. ...+.....+++..+|+++|+++..+...+..+.++. ++ .+.
T Consensus 38 ~~vVlVhgGg~~~----~~~~~g~~~~~~~~~~~l~~~~q~~l~~~~~~~l~~~G~~~~~i~~~~~~~~~~~~~~~~~~~ 113 (251)
T 2ako_A 38 YEVILVTSAAISA----GHTKLDIDRKNLINKQVLAAIGQPFLISVYNELLAKFNKLGGQILLTGKDFDSRKATKHAKNA 113 (251)
T ss_dssp SEEEEEECCHHHH----HHHHCCCCSSSHHHHHHHHHHHHHHHHHHHHHHHGGGTCCEEEEEECTGGGGCHHHHHHHHHH
T ss_pred CCEEEEECCHHHH----HHHHhCCccCCchHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEEEeccchhcCcceEehHHHH
Confidence 5799999999552 224456654 222322 2233333334456678889999876443322222221 22 377
Q ss_pred HHHHhhCCCEEEEeCCC-----CCCCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccccccHH--HHhc
Q 028621 76 AVRHLEKGRVVIFAAGT-----GNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQ--EVTS 148 (206)
Q Consensus 76 l~~~l~~g~ipvi~g~~-----g~~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~~i~~~--e~~~ 148 (206)
++.+|++|.|||+++++ +.+++++|++|+++|.+|+||+|+|+|||||||++||+++|++++|+++++. |+.+
T Consensus 114 i~~ll~~g~ipVi~~~d~v~~~~~~~~~~D~~Aa~lA~~l~Ad~liilTdVdGVy~~dP~~~~~a~~i~~i~~~~~e~~~ 193 (251)
T 2ako_A 114 IDMMINLGILPIINENDATAIEEIVFGDNDSLSAYATHFFDADLLVILSDIDGFYDKNPSEFSDAKRLEKITHIKEEWLQ 193 (251)
T ss_dssp HHHHHHTTCEEEEEECTTTCCHHHHBTTTHHHHHHHHHHTTCSEEEEEESSCSCBSSCTTTCTTCCBCCEESCCCGGGC-
T ss_pred HHHHHHCCCEEEEeCCCceeecceeecCchHHHHHHHHhcCCCEEEEEeCCCceeeCCCCCCCCCeEeeEeccchHHHHH
Confidence 88999999999999542 2357999999999999999999999999999999999999999999999998 7765
Q ss_pred C--------CcCc--chHHHHHHHHhCCCcEEEEcCCCCchHHH--HhcCCCcceEEe
Q 028621 149 K--------DLSV--MDMTAITLCQENNIPVVVFNLNQPGNIAK--AIQGERVGTLIG 194 (206)
Q Consensus 149 ~--------g~~~--~k~~a~~~a~~~gi~v~I~~g~~~~~l~~--~l~g~~~GT~i~ 194 (206)
+ +.++ +|++|+..|.++|++++|+|+++|++|.+ +|+|+..||+|.
T Consensus 194 ~~~~~~~~~~~ggm~~k~~aa~~a~~~gv~v~I~~g~~~~~l~~~~~~~g~~~GT~i~ 251 (251)
T 2ako_A 194 ATIKTGSEHGTGGIVTKLKAAKFLLEHNKKMFLASGFDLSVAKTFLLEDKQIGGTLFE 251 (251)
T ss_dssp --------CBSCHHHHHHHHHHHHHHTTCEEEEEESSSCHHHHHHHHSCCCCSSEEEC
T ss_pred HhcccCCCCccCchHHHHHHHHHHHHCCCeEEEEeCCChhhhhhhHHhcCCCCceEeC
Confidence 3 2343 48999999999999999999999999999 999999999984
No 21
>2j5v_A Glutamate 5-kinase; proline biosynthesis, gamma glutamyl kinase, amino-acid biosynthesis, transferase, feedback regulation, PUA domain; HET: RGP; 2.5A {Escherichia coli} PDB: 2j5t_A* 2w21_A
Probab=99.97 E-value=1.2e-30 Score=226.86 Aligned_cols=194 Identities=19% Similarity=0.247 Sum_probs=122.8
Q ss_pred ceEEEEEcCChhhhhhhhhhcCCCChh--hhhHH---HHHHHHHHHHHHHHHHHhCCCCceEe--cccccccccch-hH-
Q 028621 2 FQVAIVVGGGNIFRGASAAGNSGLDRS--SADYI---GMLATVMNAIFLQATMESIGIPTRVQ--TAFRMSEVAEP-YI- 72 (206)
Q Consensus 2 ~~~iiVhGGG~~~~~~~~~~~~~l~~~--~~~~~---~~~~~~~~~~ll~~~l~~~gi~a~~l--~~~~~~~v~~~-~~- 72 (206)
+++|||||||..+ ++ ++++++.. .++.. ...+.......+..+|+++|+++..+ +..++ .++. ++
T Consensus 43 ~~vVlV~gGgi~~-g~---~~lg~~~~~~~l~~~qa~aavGq~~l~~~~~~~l~~~G~~~~qvllt~~d~--~~~~r~~n 116 (367)
T 2j5v_A 43 HRIVIVTSGAIAA-GR---EHLGYPELPATIASKQLLAAVGQSRLIQLWEQLFSIYGIHVGQMLLTRADM--EDRERFLN 116 (367)
T ss_dssp CEEEEEECCHHHH-HH---HHHTSCCCCSSHHHHHHHHHHHHHHHHHHHHHHHHTTTCCEEEEEECGGGG--SSHHHHHH
T ss_pred CcEEEEEcCHHHH-HH---HHcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCceEEEEEecccc--cCceEEEh
Confidence 5899999999553 43 34566543 22322 23444444556677799999998752 22221 1211 22
Q ss_pred -HHHHHHHhhCCCEEEEeCCC-----CCCCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccccccH--H
Q 028621 73 -RRRAVRHLEKGRVVIFAAGT-----GNPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTY--Q 144 (206)
Q Consensus 73 -~~~l~~~l~~g~ipvi~g~~-----g~~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~~i~~--~ 144 (206)
.+.++.+|+.|.|||+++++ +..+++||++|+++|.+++||+|+|+|||||||++||+++|++++|+++++ +
T Consensus 117 ~~~~i~~LL~~g~IPIv~end~v~~~el~~gd~D~lAa~vA~~l~Ad~LiilTDVdGvy~~dP~~~p~a~~I~~i~~~~~ 196 (367)
T 2j5v_A 117 ARDTLRALLDNNVVPVINENDAVATAEIKVGDNDNLSALAAILAGADKLLLLTDQKGLYTADPRSNPQAELIKDVYGIDD 196 (367)
T ss_dssp HHHHHHHHHHTTCEEEEEECTTSCCGGGCCCSHHHHHHHHHHHHTCSEEEEEECC-------------------------
T ss_pred HHHHHHHHHHCCCEEEECCCCceecccccCCCHHHHHHHHHHhcCCCEEEEeecCCceECCCCCCCCCCeEeeeeCCCHH
Confidence 37888999999999998641 245799999999999999999999999999999999999999999999999 7
Q ss_pred HHhcC--------CcCcc--hHHHHHHHHhCCCcEEEEcCCCCchHHHHhcCCCcceEEecCCCCcc
Q 028621 145 EVTSK--------DLSVM--DMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGTWNSTV 201 (206)
Q Consensus 145 e~~~~--------g~~~~--k~~a~~~a~~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~~~~~~~~ 201 (206)
|+.++ +.++| |++|+..|.++|++++|+|+++|++|.++|+|+..||+|.++.....
T Consensus 197 e~~~l~~~~~s~~gtGgM~~Kl~Aa~~a~~~Gv~v~I~~g~~~~~L~~~l~g~~~GT~i~~~~~~~~ 263 (367)
T 2j5v_A 197 ALRAIAGDSVSGLGTGGMSTKLQAADVACRAGIDTIIAAGSKPGVIGDVMEGISVGTLFHAQATPLE 263 (367)
T ss_dssp -----------------CHHHHHHHHHHHHTTCEEEEEETTSTTHHHHHHHTCCCSEEECCCSSCCC
T ss_pred HHHHHhhccCCCcCcCccHHHHHHHHHHHHcCCCEEEEcCCCchHHHHHhcCCCCcEEEEcCccccc
Confidence 77654 34556 77999999999999999999999999999999999999998665533
No 22
>2egx_A Putative acetylglutamate kinase; struc genomics, NPPSFA, national project on protein structural AN functional analyses; 1.92A {Thermus thermophilus} PDB: 3u6u_A
Probab=99.97 E-value=3.1e-30 Score=215.73 Aligned_cols=185 Identities=16% Similarity=0.169 Sum_probs=140.4
Q ss_pred ceEEEEEcCChhhhhhhhhhcCCCC---h-------------hhhhHHHHH-HHHHHHHHHHHHHHhCCCCceEeccccc
Q 028621 2 FQVAIVVGGGNIFRGASAAGNSGLD---R-------------SSADYIGML-ATVMNAIFLQATMESIGIPTRVQTAFRM 64 (206)
Q Consensus 2 ~~~iiVhGGG~~~~~~~~~~~~~l~---~-------------~~~~~~~~~-~~~~~~~ll~~~l~~~gi~a~~l~~~~~ 64 (206)
+++|||||||++++. ..++++++ . ..++.+.+. ...+|..+.. +|+++|+++..+++.|.
T Consensus 29 ~~vViVhGgg~~~~~--~~~~~~~~~~~~~~~~g~~~rvt~~~~l~~~~~~~~G~i~~~l~~-~l~~~G~~a~~l~~~d~ 105 (269)
T 2egx_A 29 VKLLLVHGGSAETNK--VAEALGHPPRFLTHPGGQVSRLTDRKTLEIFEMVYCGLVNKRLVE-LLQKEGANAIGLSGLDG 105 (269)
T ss_dssp CCEEEECCCHHHHHH--HHHHTTCCCCC-------CCCCCCHHHHHHHHHHHHTHHHHHHHH-HHHHTTCCEEEEETTGG
T ss_pred CeEEEEECChHHHHH--HHHHcCCccccccccCCccCcCCCHHHHHHHHHHHHhHHHHHHHH-HHHHCCCCeEEeCCCCc
Confidence 589999999999754 44556665 2 112333332 2366766554 68889999999998774
Q ss_pred ccc------------------------cch-h-HHHHHHHHhhCCCEEEEeCC----CCC-CCCCcHHHHHHHHHhcCCc
Q 028621 65 SEV------------------------AEP-Y-IRRRAVRHLEKGRVVIFAAG----TGN-PFFTTDTAAALRCAEINAE 113 (206)
Q Consensus 65 ~~v------------------------~~~-~-~~~~l~~~l~~g~ipvi~g~----~g~-~~~~sD~~A~~lA~~l~A~ 113 (206)
..+ .++ + ..+.++.+|++|.|||+++. .|. .++++|++|+++|.+|+||
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~D~g~~g~i~~v~~~~i~~ll~~g~ipVi~~v~~~~~g~~~~~~~D~~Aa~lA~~l~Ad 185 (269)
T 2egx_A 106 RLFVGRRKTAVKYVENGKVKVHRGDYTGTVEEVNKALLDLLLQAGYLPVLTPPALSYENEAINTDGDQIAALLATLYGAE 185 (269)
T ss_dssp GCEEECBC----------------CCEECCCEECHHHHHHHHHTTCEEEEECCEEETTSCEEEECHHHHHHHHHHHHTCS
T ss_pred cceeeeecccccccccccccCCcCCCCCCceEECHHHHHHHHHCCCEEEEcCcEECCCCCEEEeCHHHHHHHHHHHcCCC
Confidence 321 111 1 14788999999999999974 343 4699999999999999999
Q ss_pred EEEEeeccCccccCCCCCCCCCcccccccHHHHh--cC---CcCcc--hHHHHHHHHhCCC-cEEEEcCCCCchHHHHhc
Q 028621 114 VVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVT--SK---DLSVM--DMTAITLCQENNI-PVVVFNLNQPGNIAKAIQ 185 (206)
Q Consensus 114 ~li~ltdV~Gv~~~dP~~~~~a~~i~~i~~~e~~--~~---g~~~~--k~~a~~~a~~~gi-~v~I~~g~~~~~l~~~l~ 185 (206)
+|+|+|||||||+ || .|++++|++++++|+. ++ +.++| |++|+..|.++|+ +++|+|+++|++|.+++.
T Consensus 186 ~li~lTdVdGv~~-dp--~~~a~~i~~i~~~e~~~~~l~~~~~ggm~~Kl~aa~~a~~~gv~~v~I~~g~~~~~l~~~l~ 262 (269)
T 2egx_A 186 ALVYLSNVPGLLA-RY--PDEASLVREIPVERIEDPEYLALAQGRMKRKVMGAVEAVKGGVKRVVFADGRVENPIRRALS 262 (269)
T ss_dssp EEEEEESSSSCBC---------CBCCEECHHHHHCHHHHTTSCHHHHHHHHHHHHHHHTTCSCEEEEESSSSSHHHHHHT
T ss_pred EEEEEeCchhhhc-CC--CCCccccccCCHHHhhHHHhcCCCCCchHHHHHHHHHHHHcCCCeEEEEeCCCchHHHHHhC
Confidence 9999999999999 88 3789999999999987 54 45556 7899999999999 899999999999999997
Q ss_pred CCCcceEEe
Q 028621 186 GERVGTLIG 194 (206)
Q Consensus 186 g~~~GT~i~ 194 (206)
| .||+|.
T Consensus 263 g--~GT~i~ 269 (269)
T 2egx_A 263 G--EGTVVR 269 (269)
T ss_dssp T--CSEEEC
T ss_pred C--CCeEEC
Confidence 7 899984
No 23
>3d40_A FOMA protein; fosfomycin, antibiotic resistance, kinase, phosphoryl transfer, transferase; 1.53A {Streptomyces wedmorensis} PDB: 3d41_A* 3qun_A* 3quo_A* 3qur_A* 3qvf_A* 3qvh_A*
Probab=99.97 E-value=1e-30 Score=220.47 Aligned_cols=189 Identities=15% Similarity=0.187 Sum_probs=134.3
Q ss_pred eEEEEEcCChhhhhhhhhhcCCCChhhhhHHHHHH-HHHHHHHHHHHHHhCCCCceEecccccccccc---hhHHHHHHH
Q 028621 3 QVAIVVGGGNIFRGASAAGNSGLDRSSADYIGMLA-TVMNAIFLQATMESIGIPTRVQTAFRMSEVAE---PYIRRRAVR 78 (206)
Q Consensus 3 ~~iiVhGGG~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~---~~~~~~l~~ 78 (206)
++|||||||++++. ..+++++++.+.+.....+ ..+|..+.. +|+++|+++..+.+.+..+..+ ....+.++.
T Consensus 66 ~vViVhGgG~~~~~--~l~~~~~~~~~~~~~~~vt~g~l~~~l~~-~l~~~G~~a~~l~~~~~~~t~dg~~~~~~~~i~~ 142 (286)
T 3d40_A 66 RMVLISGGGAFGHG--AIRDHDSTHAFSLAGLTEATFEVKKRWAE-KLRGIGVDAFPLQLAAMCTLRNGIPQLRSEVLRD 142 (286)
T ss_dssp SEEEEECCCCC--------------CCTTHHHHHHHHHHHHHHHH-HHHHTTCCEEECCGGGTEEEETTEEEECCSHHHH
T ss_pred eEEEEECCHHHHHH--HHHHcCCCcccchhcchhhHHHHHHHHHH-HHHHcCCcEEEEEeecCCcccCCeEEehHHHHHH
Confidence 69999999999665 4455676655431111221 356665544 5888999999887765432100 001246889
Q ss_pred HhhCCCEEEEeCCC-----CC-CCCCcHHHHHHHHHh-cCCcEEEEeeccCccccCCCCCCCCCcccccccHHHHhcC--
Q 028621 79 HLEKGRVVIFAAGT-----GN-PFFTTDTAAALRCAE-INAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK-- 149 (206)
Q Consensus 79 ~l~~g~ipvi~g~~-----g~-~~~~sD~~A~~lA~~-l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~-- 149 (206)
+|++|.|||++|+. |. +++++|++|+++|.+ |+||+|+|+|||||||++||+ ++++|+++++.|+.++
T Consensus 143 lL~~g~IpVi~gd~~~~~~g~~~~~~~D~~Aa~lA~~~l~Ad~LiilTDVdGVy~~dP~---~a~~i~~is~~e~~~l~~ 219 (286)
T 3d40_A 143 VLDHGALPVLAGDALFDEHGKLWAFSSDRVPEVLLPMVEGRLRVVTLTDVDGIVTDGAG---GDTILPEVDARSPEQAYA 219 (286)
T ss_dssp HHHTTCEEEEECEEEEBTTSCEEEECGGGHHHHTTTTCCSCEEEEEEESSSSCEECC------CEECCEEETTSCHHHHH
T ss_pred HHHCcCEEEEcCCeEEcCCCCEEeeCHHHHHHHHHHhhCCCCEEEEecCCCeeEcCCCC---CCcCCcccCHHHHHHHHH
Confidence 99999999999842 32 569999999999999 999999999999999999997 7899999998653221
Q ss_pred ---------CcCcc--hHHHHHHHHhCCCcEEEEcCCCCchHHHHhcC-----CCc-ceEEecCC
Q 028621 150 ---------DLSVM--DMTAITLCQENNIPVVVFNLNQPGNIAKAIQG-----ERV-GTLIGGTW 197 (206)
Q Consensus 150 ---------g~~~~--k~~a~~~a~~~gi~v~I~~g~~~~~l~~~l~g-----~~~-GT~i~~~~ 197 (206)
+.++| |++|+..+.++|++++|+|+++|++|.++|++ +.+ ||.|..+.
T Consensus 220 ~~~~~~~~~~tggM~~Kl~Aa~~a~~~gv~v~I~~g~~p~~l~~l~t~~~~~~~~~~~t~i~~~~ 284 (286)
T 3d40_A 220 ALWGSSEWDATGAMHTKLDALVTCARRGAECFIMRGDPGSDLEFLTAPFSSWPAHVRSTRITTTA 284 (286)
T ss_dssp HHHHSCC----CHHHHHHHHHHHHHHTTCEEEEEECCTTCCCGGGGSCGGGSCTTCCCEEEEC--
T ss_pred hhccccCCcccCcHHHHHHHHHHHHHCCCcEEEEeCCCCCcHHHHhcCcccCcccccceeeeecc
Confidence 33556 78999999999999999999999999999999 776 99998754
No 24
>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A
Probab=99.97 E-value=1.6e-29 Score=223.50 Aligned_cols=185 Identities=22% Similarity=0.296 Sum_probs=145.9
Q ss_pred ceEEEEEc-CChhhhhhhhh-hc--CCCChhhhhHHHHHHHHHHHHHHHHHHHhCCCCceEecccccccccc-hh-----
Q 028621 2 FQVAIVVG-GGNIFRGASAA-GN--SGLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAE-PY----- 71 (206)
Q Consensus 2 ~~~iiVhG-GG~~~~~~~~~-~~--~~l~~~~~~~~~~~~~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~-~~----- 71 (206)
++++|||| +|++.+..... .. ...+...++.+.+.++.+|..+++.+|+++|+++.++++.++..+.. ++
T Consensus 34 ~~~vvV~sa~g~~~~~ll~~~~~~~~~~~~~~~d~~~a~Ge~~~~~ll~~~L~~~G~~a~~l~~~~~~~~t~~~~~~~~v 113 (421)
T 3ab4_A 34 NDVVVVCSAMGDTTDELLELAAAVNPVPPAREMDMLLTAGERISNALVAMAIESLGAEAQSFTGSQAGVLTTERHGNARI 113 (421)
T ss_dssp CEEEEEECCSTTHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEECCCC---------------
T ss_pred CCEEEEEcCCHHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEEehhhceEEeccCCCCeee
Confidence 47888885 77775554321 11 23456677888888999999999999999999999999998754332 21
Q ss_pred ---HHHHHHHHhhCCCEEEEeCCC------CC----CCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCccc
Q 028621 72 ---IRRRAVRHLEKGRVVIFAAGT------GN----PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLL 138 (206)
Q Consensus 72 ---~~~~l~~~l~~g~ipvi~g~~------g~----~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i 138 (206)
..+.++.+|++|.|||++|+. |. .++++|++|+++|.+|+||+|++||||||||++||+.+|++++|
T Consensus 114 ~~~~~~~i~~~l~~g~ipVv~g~~g~~~~~g~~~tlgrg~sD~~Aa~lA~~l~Ad~l~i~TDVdGv~~~dPr~~~~a~~i 193 (421)
T 3ab4_A 114 VDVTPGRVREALDEGKICIVAGFQGVNKETRDVTTLGRGGSDTTAVALAAALNADVCEIYSDVDGVYTADPRIVPNAQKL 193 (421)
T ss_dssp --CCHHHHHHHHHTTCEEEC------------------CCHHHHHHHHHHHHTCSEEEEEESCCSCBSSCTTTSTTCCBC
T ss_pred chhhHHHHHHHHhCCCEEEEeCCcCcCCCCCceEEeCCCCHHHHHHHHHHHCCCCEEEEEECCCccCcCCCCCCCCCeEc
Confidence 137788999999999999872 32 23589999999999999999999999999999999999999999
Q ss_pred ccccHHHHhcC---CcCcchHHHHHHHHhCCCcEEEEcCCCCchHHHHhcCCCcceEEecC
Q 028621 139 DTLTYQEVTSK---DLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGT 196 (206)
Q Consensus 139 ~~i~~~e~~~~---g~~~~k~~a~~~a~~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~~~ 196 (206)
++++++|+.++ |.+++|++|+.+|.++|+|++|.|+++| ..||+|.++
T Consensus 194 ~~is~~e~~el~~~Ga~v~~~~a~~~a~~~gi~v~I~n~~~~----------~~GT~I~~~ 244 (421)
T 3ab4_A 194 EKLSFEEMLELAAVGSKILVLRSVEYARAFNVPLRVRSSYSN----------DPGTLIAGS 244 (421)
T ss_dssp SEECHHHHHHHHHTTCCSSCHHHHHHHHHTTCCEEEEESSSC----------CCCEEECSC
T ss_pred cccCHHHHHHHHhcCCcCchHHHHHHHHHcCCCEEEecCcCC----------CCCeEEEec
Confidence 99999998875 7888999999999999999999999987 479999876
No 25
>2buf_A Acetylglutamate kinase; acetyglutamate kinase, ADP, arginine biosynthesis, FEED-BACK inhibition, hexamer, transferase; HET: NLG ADP; 2.95A {Pseudomonas aeruginosa} SCOP: c.73.1.2
Probab=99.97 E-value=2.3e-29 Score=213.55 Aligned_cols=187 Identities=17% Similarity=0.193 Sum_probs=146.5
Q ss_pred ceEEEEEcCChhhhhhhhhhcCCCCh-----------hhhhHHHHHH-HHHHHHHHHHHHHhCCCCceEeccccccc---
Q 028621 2 FQVAIVVGGGNIFRGASAAGNSGLDR-----------SSADYIGMLA-TVMNAIFLQATMESIGIPTRVQTAFRMSE--- 66 (206)
Q Consensus 2 ~~~iiVhGGG~~~~~~~~~~~~~l~~-----------~~~~~~~~~~-~~~~~~ll~~~l~~~gi~a~~l~~~~~~~--- 66 (206)
+++|||||||++++. ..+++++++ ..++.+.+.. ..+|..+ ..+|+++|++++.+++.+..+
T Consensus 59 ~~vVlVhGgG~~i~~--~~~~~g~~~~~~~g~rvt~~~~l~~~~~~~~G~~~~~l-~~~l~~~g~~a~~~~~~~~~~l~~ 135 (300)
T 2buf_A 59 INPVVVHGGGPQIGD--LLKRLSIESHFIDGMRVTDAATMDVVEMVLGGQVNKDI-VNLINRHGGSAIGLTGKDAELIRA 135 (300)
T ss_dssp CEEEEEECCCHHHHH--HHHHTTCCCCBSSSSBCBCHHHHHHHHHHHHHTHHHHH-HHHHHHTTCCEEEEEETGGGCEEE
T ss_pred CeEEEEECCcHHHHH--HHHHcCCCccccCCeecCCHHHHHHHHHHHHHHHHHHH-HHHHHhCCCCEEEecCCCCCeeee
Confidence 589999999999764 456667653 2345554443 4666655 456889999999888764321
Q ss_pred ----------------------ccch-h-HHHHHHHHhhCCCEEEEeCC----CCCCC-CCcHHHHHHHHHhcCCcEEEE
Q 028621 67 ----------------------VAEP-Y-IRRRAVRHLEKGRVVIFAAG----TGNPF-FTTDTAAALRCAEINAEVVLK 117 (206)
Q Consensus 67 ----------------------v~~~-~-~~~~l~~~l~~g~ipvi~g~----~g~~~-~~sD~~A~~lA~~l~A~~li~ 117 (206)
+... + ..+.++.+|++|.|||+++. .|..+ +++|++|+++|.+|+||+|+|
T Consensus 136 ~~~~~~~~~~~~~~~~~~d~g~~g~v~~v~~~~i~~lL~~g~IpVi~~v~~~~~G~~~~i~~D~~Aa~lA~~l~Ad~li~ 215 (300)
T 2buf_A 136 KKLTVTRQTPEMTKPEIIDIGHVGEVTGVNVGLLNMLVKGDFIPVIAPIGVGSNGESYNINADLVAGKVAEALKAEKLML 215 (300)
T ss_dssp EECCCCCC--------CCCCBSBEEEEEECHHHHHHHHHTTCEEEEEEEEECTTSCEEECCHHHHHHHHHHHHTCSEEEE
T ss_pred eeccccccchhhcccccccCCcceeEEEECHHHHHHHHHCCCEEEEcCceeCCCCCEEEECHHHHHHHHHHHcCCCEEEE
Confidence 1110 1 14788899999999999964 34454 599999999999999999999
Q ss_pred eeccCccccCCCCCCCCCcccccccHHHHhcC-----CcCcc--hHHHHHHHHhCCCc-EEEEcCCCCchH-HHHhcCCC
Q 028621 118 ATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK-----DLSVM--DMTAITLCQENNIP-VVVFNLNQPGNI-AKAIQGER 188 (206)
Q Consensus 118 ltdV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~-----g~~~~--k~~a~~~a~~~gi~-v~I~~g~~~~~l-~~~l~g~~ 188 (206)
+|||||||++ ++++|+++++.|+.++ +.++| |++++..+.++|++ ++|+|++.|++| .++|++++
T Consensus 216 lTdVdGv~~~------~a~~i~~i~~~e~~~~~~~~~~~ggM~~Kv~aa~~a~~~gv~~v~I~~g~~~~~ll~~~~~~~~ 289 (300)
T 2buf_A 216 LTNIAGLMDK------QGQVLTGLSTEQVNELIADGTIYGGMLPKIRCALEAVQGGVTSAHIIDGRVPNAVLLEIFTDSG 289 (300)
T ss_dssp EESSSCCBCT------TSCBCCEECHHHHHHHHHTTCSCTTHHHHHHHHHHHHHTTCSEEEEEETTSTTHHHHHHSSTTC
T ss_pred EeCCCCeECC------CCcChhhCCHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCEEEEeeCCCCchHHHHHhcCCC
Confidence 9999999986 3789999999988754 24456 78999999999998 999999999998 68999999
Q ss_pred cceEEecCC
Q 028621 189 VGTLIGGTW 197 (206)
Q Consensus 189 ~GT~i~~~~ 197 (206)
.||+|.++.
T Consensus 290 ~GT~i~~~~ 298 (300)
T 2buf_A 290 VGTLISNRK 298 (300)
T ss_dssp CSEEEECCC
T ss_pred CceEEEeCC
Confidence 999998754
No 26
>1gs5_A Acetylglutamate kinase; carbamate kinase, amino acid kinase, arginine biosynthesis, phosphoryl group transfer, protein crystallography; HET: NLG ANP; 1.5A {Escherichia coli} SCOP: c.73.1.2 PDB: 1gsj_A* 1oh9_A* 1oha_A* 1ohb_A* 2wxb_A 2x2w_A* 3t7b_A*
Probab=99.97 E-value=6.4e-30 Score=212.46 Aligned_cols=182 Identities=20% Similarity=0.191 Sum_probs=143.2
Q ss_pred eEEEEEcCChhhhhhhhhhcCCCCh--------hhhhHH----HHHHHHHHHHHHHHHHHhCCCCceEeccccccccc--
Q 028621 3 QVAIVVGGGNIFRGASAAGNSGLDR--------SSADYI----GMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVA-- 68 (206)
Q Consensus 3 ~~iiVhGGG~~~~~~~~~~~~~l~~--------~~~~~~----~~~~~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~-- 68 (206)
++|||||||++++... ++++++. ...+.+ ..+++++|+.+++. |+++|+++.++++.+..++.
T Consensus 37 ~vVvV~Ggg~~~~~ll--~~~g~~~~~~~glr~t~~~~l~~~~~~l~~~~n~~l~~~-l~~~G~~a~~l~~~~~~~~~~~ 113 (258)
T 1gs5_A 37 PLVIVHGGGCVVDELM--KGLNLPVKKKNGLRVTPADQIDIITGALAGTANKTLLAW-AKKHQIAAVGLFLGDGDSVKVT 113 (258)
T ss_dssp CEEEEECCHHHHHHHH--HHHTCCCCEETTEECBCHHHHHHHHHHHHTHHHHHHHHH-HHHTTCCEEEECTTGGGCEEEE
T ss_pred eEEEEeCCcHHHHHHH--HHcCCCcceeCCEeeCCHHHHHHHHHHHhccchHHHHHH-HHHCCCCeEEEeecCCCEEEEE
Confidence 5899999999988643 3333332 122333 45677999999985 68899999999998753221
Q ss_pred ----------ch--hHHHHHHHHhhCCCEEEEeCC----CCCC-CCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCC
Q 028621 69 ----------EP--YIRRRAVRHLEKGRVVIFAAG----TGNP-FFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRR 131 (206)
Q Consensus 69 ----------~~--~~~~~l~~~l~~g~ipvi~g~----~g~~-~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~ 131 (206)
+. ...+.++.+|++|.|||++|+ .|+. ++++|++|+++|.+|+|| ++++|||||||++|
T Consensus 114 ~~~~d~~~~g~~~~~~~~~i~~ll~~g~ipVi~~~g~~~~g~~~~~~~D~~Aa~lA~~l~Ad-li~ltdV~Gv~~~d--- 189 (258)
T 1gs5_A 114 QLDEELGHVGLAQPGSPKLINSLLENGYLPVVSSIGVTDEGQLMNVNADQAATALAATLGAD-LILLSDVSGILDGK--- 189 (258)
T ss_dssp ECCGGGBSBEEEEECCCHHHHHHHHTTCEEEECSEEECTTSCEEECCHHHHHHHHHHHHTCE-EEEEESSSSCBCTT---
T ss_pred EcCCCCCCcCceeEECHHHHHHHHHCCCEEEEeCCcCCCCCcEEEecHHHHHHHHHHHhCCc-EEEEeCCCceECCC---
Confidence 11 123678899999999999987 3443 689999999999999999 99999999999975
Q ss_pred CCCCcccccccHHHHhcC-----CcCcc--hHHHHHHHH-hCCCcEEEEcCCCCchHHHHhcCCCcceEEe
Q 028621 132 NPNARLLDTLTYQEVTSK-----DLSVM--DMTAITLCQ-ENNIPVVVFNLNQPGNIAKAIQGERVGTLIG 194 (206)
Q Consensus 132 ~~~a~~i~~i~~~e~~~~-----g~~~~--k~~a~~~a~-~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~ 194 (206)
+++|++++++|+.++ ..++| |+.++..++ +.+++++|+|+++|++|.++|+|++.||+|.
T Consensus 190 ---~~~i~~i~~~e~~~l~~~~~~~gGm~~k~~~a~~~~~~~~~~v~I~~~~~~~~l~~~~~~~~~GT~i~ 257 (258)
T 1gs5_A 190 ---GQRIAEMTAAKAEQLIEQGIITDGMIVKVNAALDAARTLGRPVDIASWRHAEQLPALFNGMPMGTRIL 257 (258)
T ss_dssp ---SCBCCEECHHHHHHHHHTTCSCTHHHHHHHHHHHHHHHHTSCEEEEESSCGGGHHHHHTTCCSSEEEC
T ss_pred ---CCCCcccCHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCEEEEecCCCchHHHHHhcCCCCcEEEe
Confidence 589999999988764 23445 777777665 5688999999999999999999999999996
No 27
>2bty_A Acetylglutamate kinase; N-acetyl-L-glutamate kinase, amino acid kinase, phosphoryl group transfer, arginine metabolism, transferase; HET: ARG NLG; 2.75A {Thermotoga maritima} SCOP: c.73.1.2
Probab=99.97 E-value=1.9e-29 Score=212.18 Aligned_cols=185 Identities=20% Similarity=0.229 Sum_probs=145.1
Q ss_pred ceEEEEEcCChhhhhhhhhhcCCCCh-----------hhhhHHHHHH-HHHHHHHHHHHHHhCCCCceEecccccccc--
Q 028621 2 FQVAIVVGGGNIFRGASAAGNSGLDR-----------SSADYIGMLA-TVMNAIFLQATMESIGIPTRVQTAFRMSEV-- 67 (206)
Q Consensus 2 ~~~iiVhGGG~~~~~~~~~~~~~l~~-----------~~~~~~~~~~-~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v-- 67 (206)
+++|||||||++++.. .++++++. ..++.+.+.. ..+|..+ ..+|+++|++++++++.+...+
T Consensus 54 ~~vVlVhGgG~~i~~~--~~~~~~~~~~~~g~r~t~~~~l~~~~~~~~G~~~~~l-~~~l~~~g~~a~~l~~~~~~~l~~ 130 (282)
T 2bty_A 54 IKPIIVHGGGPAISQM--MKDLGIEPVFKNGHRVTDEKTMEIVEMVLVGKINKEI-VMNLNLHGGRAVGICGKDSKLIVA 130 (282)
T ss_dssp CEEEEEECCSHHHHHH--HHHHTCCCCBSSSSBCBCHHHHHHHHHHHHHTHHHHH-HHHHHTTTCCEEEEETTGGGSEEE
T ss_pred CcEEEEECCcHHHHHH--HHHcCCCccccCCcccCCHHHHHHHHHHHhhHHHHHH-HHHHHhCCCCceecChhhCCEEEE
Confidence 5899999999997553 45556543 3445544433 4667665 5578899999999887653221
Q ss_pred ------------cch-h-HHHHHHHHhhCCCEEEEeCC----CCCCC-CCcHHHHHHHHHhcCCcEEEEeeccCccccCC
Q 028621 68 ------------AEP-Y-IRRRAVRHLEKGRVVIFAAG----TGNPF-FTTDTAAALRCAEINAEVVLKATNVDGVYDDN 128 (206)
Q Consensus 68 ------------~~~-~-~~~~l~~~l~~g~ipvi~g~----~g~~~-~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~d 128 (206)
... + ..+.++.+|++|.|||++|+ .|..+ +++|++|+++|.+|+||+|+++|||||||++
T Consensus 131 ~~~~~~~d~g~~g~v~~~~~~~i~~ll~~g~IpVi~~v~~~~~G~~~~~~~D~~Aa~lA~~l~Ad~liilTDVdGvy~~- 209 (282)
T 2bty_A 131 EKETKHGDIGYVGKVKKVNPEILHALIENDYIPVIAPVGIGEDGHSYNINADTAAAEIAKSLMAEKLILLTDVDGVLKD- 209 (282)
T ss_dssp EECCTTCCCBSBEEEEEECTHHHHHHHHTTCEEEEESEEECSSSCEEECCHHHHHHHHHHHHTCSEEEEEESSSSCEET-
T ss_pred ecCCcccCCCcceEEEEecHHHHHHHHHCCCEEEECCCccCCCCCEEEECHHHHHHHHHHHcCCCEEEEEeCCCCeecC-
Confidence 110 1 14788999999999999985 34444 5999999999999999999999999999996
Q ss_pred CCCCCCCcccccccHHHHhcC---C--cCcc--hHHHHHHHHhCCCc-EEEEcCCCCchH-HHHhcCCCcceEEecC
Q 028621 129 PRRNPNARLLDTLTYQEVTSK---D--LSVM--DMTAITLCQENNIP-VVVFNLNQPGNI-AKAIQGERVGTLIGGT 196 (206)
Q Consensus 129 P~~~~~a~~i~~i~~~e~~~~---g--~~~~--k~~a~~~a~~~gi~-v~I~~g~~~~~l-~~~l~g~~~GT~i~~~ 196 (206)
| ++|++++++|+.++ | .++| |++|+..+.++|++ ++|+|++.|++| .++|+++..||+|.++
T Consensus 210 ----~--~~i~~i~~~e~~~~~~~g~~~gGM~~K~~aa~~a~~~gv~~v~I~~g~~~~~ll~~~~~~~~~GT~i~~~ 280 (282)
T 2bty_A 210 ----G--KLISTLTPDEAEELIRDGTVTGGMIPKVECAVSAVRGGVGAVHIINGGLEHAILLEIFSRKGIGTMIKEL 280 (282)
T ss_dssp ----T--EECCEECHHHHHHHHTTTCSCTTHHHHHHHHHHHHHTTCSCEEEEETTSTTHHHHHHSSSSCSSEEECCC
T ss_pred ----c--hhhhhCCHHHHHHHHHcCCCCCcHHHHHHHHHHHHHhCCCeEEEecCCCCchHHHHHhcCCCCceEEEeC
Confidence 2 89999999988754 2 3335 89999999999997 999999999998 6899999999999875
No 28
>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis}
Probab=99.97 E-value=1.7e-29 Score=231.70 Aligned_cols=186 Identities=23% Similarity=0.259 Sum_probs=156.4
Q ss_pred ceEEEEEcC-Chhhhhhh-hhhcC--CCChhhhhHHHHHHHHHHHHHHHHHHHhCCCCceEecccccccccchh------
Q 028621 2 FQVAIVVGG-GNIFRGAS-AAGNS--GLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEPY------ 71 (206)
Q Consensus 2 ~~~iiVhGG-G~~~~~~~-~~~~~--~l~~~~~~~~~~~~~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~~~------ 71 (206)
++++||||| |...+... .++++ ..+...++.+...|+++|+.+++.+|+++|++++++++++.+.+.+.+
T Consensus 34 ~~vvvV~sa~G~~t~~ll~~~~~~~~~~~~~~~d~l~s~Ge~~s~~l~~~~l~~~G~~a~~l~~~~~~l~~~~~~~~~~~ 113 (600)
T 3l76_A 34 NSLVVVVSAMGKSTDVLVDLAQQISPNPCRREMDMLLSTGEQVSIALLSLALQEIDQPAISLTGAQVGIVTEAEHSRARI 113 (600)
T ss_dssp CEEEEEECCSSTHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEGGGTEEEEC-------C
T ss_pred CcEEEEECCCcHHHHHHHHHHHhhccCCCHHHHHHHHHHhHHHHHHHHHHHHHhCCCCeEEechhHcceEEecCCCCcee
Confidence 579999999 88877654 23332 244566788888899999999999999999999999999876554321
Q ss_pred --H-HHHHHHHhhCCCEEEEeCCC-----CC------CCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcc
Q 028621 72 --I-RRRAVRHLEKGRVVIFAAGT-----GN------PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARL 137 (206)
Q Consensus 72 --~-~~~l~~~l~~g~ipvi~g~~-----g~------~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~ 137 (206)
+ .+.++.+|++|.|||++||. |. .+++||++|+++|.+|+||+|++||||||||++||+.+|++++
T Consensus 114 ~~~~~~~i~~ll~~g~IpVv~Gf~g~~~~g~~~~~tlgrGgsD~~Aa~lA~~l~Ad~l~i~TDVdGv~~~dPr~~~~a~~ 193 (600)
T 3l76_A 114 LEIRPDRLEHHLREGKVVVVAGFQGISSVEHLEITTLGRGGSDTSAVALAAALKADFCEIYTDVPGILTTDPRLVPEAQL 193 (600)
T ss_dssp CEEEECCHHHHHTTTCEEEEECEEEC----CEEEECCCTTHHHHHHHHHHHHHTCSEEEEEESSSSCBSSCTTTCTTCCB
T ss_pred ccccHHHHHHHHhCCCEEEEECCeecCCCCCEEEecCCCCChHHHHHHHHHHcCCCEEEEEECCCcCCCCCCCCCCCCeE
Confidence 1 25688899999999999863 21 2467899999999999999999999999999999999999999
Q ss_pred cccccHHHHhcC---CcCcchHHHHHHHHhCCCcEEEEcCCCCchHHHHhcCCCcceEEecCC
Q 028621 138 LDTLTYQEVTSK---DLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGTW 197 (206)
Q Consensus 138 i~~i~~~e~~~~---g~~~~k~~a~~~a~~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~~~~ 197 (206)
|++++++|+.++ |.++|+++|+.+|.++|+|++|.|++++ ..||+|.++.
T Consensus 194 i~~is~~e~~ela~~G~~vm~p~a~~~a~~~gipv~I~n~~~~----------~~GT~I~~~~ 246 (600)
T 3l76_A 194 MAEITCDEMLELASLGAKVLHPRAVEIARNYGIPLVVRSSWSD----------EPGTKVVAPP 246 (600)
T ss_dssp CSEEEHHHHHHTGGGGTTTCCHHHHHHHHHHTCCEEEEETTCC----------SCCEEEECCC
T ss_pred eeEEcHHHHHHHHhCCCCccHHHHHHHHHHCCCeEEEEECCCC----------CCCeEEecCC
Confidence 999999998875 7889999999999999999999999875 4799998764
No 29
>3zzh_A Acetylglutamate kinase; transferase, arginine biosynthesis; HET: ARG NLG; 2.10A {Saccharomyces cerevisiae} PDB: 3zzg_A 3zzf_A*
Probab=99.96 E-value=2.2e-28 Score=207.59 Aligned_cols=184 Identities=14% Similarity=0.172 Sum_probs=140.2
Q ss_pred ceEEEEEcCChhhhhhhhhhcCCCChh-----------hhhHHHHHHHHHHHHHHHHHHHhCCCCceEecccc-------
Q 028621 2 FQVAIVVGGGNIFRGASAAGNSGLDRS-----------SADYIGMLATVMNAIFLQATMESIGIPTRVQTAFR------- 63 (206)
Q Consensus 2 ~~~iiVhGGG~~~~~~~~~~~~~l~~~-----------~~~~~~~~~~~~~~~ll~~~l~~~gi~a~~l~~~~------- 63 (206)
.++|||||||++++. .+++++++++ .++.+.+....+|..++.. |++.|++++++++.-
T Consensus 79 ~~~VvVHGgG~~i~~--~l~~~gi~~~~~~G~RvTd~~~l~vv~m~~~~vn~~lv~~-L~~~G~~Av~l~gg~~~a~~~~ 155 (307)
T 3zzh_A 79 LYPIVLHGTGPQVNG--RLEAQGIEPDYIDGIRITDEHTMAVVRKCFLEQNLKLVTA-LEQLGVRARPITSGVFTADYLD 155 (307)
T ss_dssp CCEEEEECCHHHHHH--HHHHTTCCCCEETTEECBCHHHHHHHHHHHHHHHHHHHHH-HHHTTCCEEEECSSSEEEEESC
T ss_pred CCEEEEECCCHHHHH--HHHHcCCCccccCCeecCCHHHHHHHHHHHHHHHHHHHHH-HHhCCCCeeEEcCCcEEEEecC
Confidence 478999999999877 4566777643 3455655555899988765 778999999998721
Q ss_pred ---cccccchh--HHHHHHHHhhCCCEEEEeCC----CCC-CCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCC
Q 028621 64 ---MSEVAEPY--IRRRAVRHLEKGRVVIFAAG----TGN-PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNP 133 (206)
Q Consensus 64 ---~~~v~~~~--~~~~l~~~l~~g~ipvi~g~----~g~-~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~ 133 (206)
++++++.. ..+.++.+|++|.|||++|+ .|. .++++|++|+++|.+|+||+|+|+|||||||++ |
T Consensus 156 ~~d~g~~G~i~~v~~~~i~~lL~~g~IpVi~~~g~~~~G~~~~i~~D~~A~~lA~~L~Ad~Li~lTdV~GV~~~-----~ 230 (307)
T 3zzh_A 156 KDKYKLVGNIKSVTKEPIEASIKAGALPILTSLAETASGQMLNVNADVAAGELARVFEPLKIVYLNEKGGIING-----S 230 (307)
T ss_dssp HHHHBSBEEEEEECCHHHHHHHHHTCEEEECCCEECTTCBEEBCCHHHHHHHHHHHHCCSEEEEECSSCSCEET-----T
T ss_pred ccccCccccccccCHHHHHHHHHCCCEEEEeCCeECCCCcEEecCHHHHHHHHHHhCCCCEEEEEeCCcceecC-----C
Confidence 12222211 14788999999999999986 243 358999999999999999999999999999986 3
Q ss_pred CCcccccccHHH-HhcC-----CcCcc--hHHHHHHHHh---CCCcEEEEcCCCCchH-HHHhcCCCcceEEecC
Q 028621 134 NARLLDTLTYQE-VTSK-----DLSVM--DMTAITLCQE---NNIPVVVFNLNQPGNI-AKAIQGERVGTLIGGT 196 (206)
Q Consensus 134 ~a~~i~~i~~~e-~~~~-----g~~~~--k~~a~~~a~~---~gi~v~I~~g~~~~~l-~~~l~g~~~GT~i~~~ 196 (206)
++++|+++++.| +.++ ..++| |+++++.|.+ .+.+++|++ |+.+ .++|+++++||+|.+.
T Consensus 231 ~~~~i~~i~~~e~~~~l~~~~~~tGGM~~Kl~aa~~a~~~v~~g~~v~I~~---~~~ll~elft~~g~GT~I~~~ 302 (307)
T 3zzh_A 231 TGEKISMINLDEEYDDLMKQSWVKYGTKLKIREIKELLDYLPRSSSVAIIN---VQDLQKELFTDSGAGTMIRRG 302 (307)
T ss_dssp TTEECCEEEHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHSCTTCCEEEEC---GGGHHHHHHSCCCCSEEEECC
T ss_pred CCcCCcccCHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHhccCeEEEEeC---ccHHHHHHhcCCCCcEEEecC
Confidence 589999999865 3332 23445 7776555544 478899998 7776 5789999999999975
No 30
>2e9y_A Carbamate kinase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=99.95 E-value=2.5e-28 Score=208.47 Aligned_cols=185 Identities=16% Similarity=0.152 Sum_probs=139.4
Q ss_pred ceEEEEEcCChhhhhhhhhhcCCCCh-----hhhhHHHH-----HHHHHHHHHHHHHHHhCCCCc--------eEecccc
Q 028621 2 FQVAIVVGGGNIFRGASAAGNSGLDR-----SSADYIGM-----LATVMNAIFLQATMESIGIPT--------RVQTAFR 63 (206)
Q Consensus 2 ~~~iiVhGGG~~~~~~~~~~~~~l~~-----~~~~~~~~-----~~~~~~~~ll~~~l~~~gi~a--------~~l~~~~ 63 (206)
+++|||||||++++.. .+++++.+ ..++.+.+ .+..++..+ +..|.++|+++ +.+++.|
T Consensus 47 ~~vVlVhGgg~~~~~~--~~~~~~~~~~t~~~~l~~~~~~~~G~i~~~l~~~l-~~~l~~~g~~a~~~~v~~qv~l~~~d 123 (316)
T 2e9y_A 47 WRSVITHGNGPQVGYL--SEAFEALPPERPRQPLYIATAMTQAWIGLLLKHSL-EEELRRRGLNVLVPVVISRVLVDVSD 123 (316)
T ss_dssp CEEEEECCCHHHHHHH--HHHHHTSCTTSCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHTTCCCCCCEECCEEEECTTC
T ss_pred CEEEEEcCCcHHHhHH--HHHcCCCCCCCCHHHHHHHHHHHHhHHHHHHHHHH-HHHHHhcCCCccccceeeEEEecccc
Confidence 5899999999997753 34455543 33555443 333566544 45577899997 5666665
Q ss_pred c-------------------------ccc--cc-----------h-----hHHHHHHHHhhCCCEEEEeCCCCC------
Q 028621 64 M-------------------------SEV--AE-----------P-----YIRRRAVRHLEKGRVVIFAAGTGN------ 94 (206)
Q Consensus 64 ~-------------------------~~v--~~-----------~-----~~~~~l~~~l~~g~ipvi~g~~g~------ 94 (206)
. +++ .+ | ...+.++.+|++|.|||++|+.|.
T Consensus 124 ~~f~~~~k~~g~~~~~~~a~~~~~~~g~~~~~~~g~g~r~vv~sp~~i~~v~~~~i~~lL~~g~IpI~~g~~g~pv~~~~ 203 (316)
T 2e9y_A 124 PSFNNPSKPVGPIYGREEAEELSRRYGWVFKRDPRGGFRRVVPSPRPVSIVDRDLIAEASAESPAVVALGGGGVPVVERP 203 (316)
T ss_dssp GGGTSCCEEEEEEECHHHHHHHHHHHCCEEEECTTSSEEEEECCCCEEEETTHHHHHHHHHHCSEEEECGGGCEEEEECT
T ss_pred ccccccccccccccchhhhhhhhhhcceeeeccccccceecccCCCcceeehHHHHHHHHHCCCEEEEECCCCCCeeECC
Confidence 2 121 11 1 125788999999999999864322
Q ss_pred --------CCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccccccHHHHhcC------CcCcc--hHHH
Q 028621 95 --------PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK------DLSVM--DMTA 158 (206)
Q Consensus 95 --------~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~------g~~~~--k~~a 158 (206)
.++++|++|+++|.+|+||+|+|+|||||||+ ||+ +|++++|++++++|+.++ +.++| |+++
T Consensus 204 ~g~~~g~~~~id~D~~Aa~lA~~l~Ad~LiilTdVdGVy~-dp~-~p~a~~i~~i~~~e~~~~~~~g~~~~GgM~~Kv~a 281 (316)
T 2e9y_A 204 GGVLEPVEAVVDKDLASSLLATQLNADLLVILTDVPGVAV-NYG-REGERWLRRAAASELKKYLREGHFPPGSMGPKVEA 281 (316)
T ss_dssp TSCEEECSCCCCHHHHHHHHHHHTTCSEEEEEESSSSCEE-TTT-STTCEECSEEEHHHHHHHHHTTCSCTTTHHHHHHH
T ss_pred CCCeecceeeeCHHHHHHHHHHHcCCCEEEEEeCchHhhC-CCC-CCCCcCCcEEcHHHHHHHHhcCCCCCCCHHHHHHH
Confidence 23599999999999999999999999999999 784 788999999999888754 22444 9999
Q ss_pred HHHHHhCCC-cEEEEcCCCCchHHHHhcCCCcceEEec
Q 028621 159 ITLCQENNI-PVVVFNLNQPGNIAKAIQGERVGTLIGG 195 (206)
Q Consensus 159 ~~~a~~~gi-~v~I~~g~~~~~l~~~l~g~~~GT~i~~ 195 (206)
|..+.++|+ +++|++ +++|.++|+| ..||+|.+
T Consensus 282 a~~a~~~gv~~v~I~~---~~~l~~~l~g-~~GT~i~~ 315 (316)
T 2e9y_A 282 AISFVERTGKPAVIGS---LEEARQVLSL-QAGTVVML 315 (316)
T ss_dssp HHHHHHHHCSCEEEEE---STTHHHHHTT-SSSEEEEC
T ss_pred HHHHHHcCCCeEEECc---HHHHHHHHcC-CCCeEEec
Confidence 999999999 799997 6779999998 79999975
No 31
>3c1m_A Probable aspartokinase; allosteric inhibition, threonine-sensitive, ACT DOMA amino-acid biosynthesis, threonine biosynthesis; HET: ANP; 2.30A {Methanocaldococcus jannaschii} PDB: 3c1n_A 3c20_A 2hmf_A*
Probab=99.95 E-value=1.1e-27 Score=214.63 Aligned_cols=164 Identities=25% Similarity=0.333 Sum_probs=143.8
Q ss_pred CChhhhhHHHHHHHHHHHHHHHHHHHhCCCCceEeccccccccc-------ch---hHHHHHHHHhhCCCEEEEeCCCC-
Q 028621 25 LDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVA-------EP---YIRRRAVRHLEKGRVVIFAAGTG- 93 (206)
Q Consensus 25 l~~~~~~~~~~~~~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~-------~~---~~~~~l~~~l~~g~ipvi~g~~g- 93 (206)
+++...|.+.+.||++|+.+++.+|+++|++++++++.+++.+. ++ ...+.++.+|+.|.|||++||.|
T Consensus 117 ~~~~~~d~~~~~ge~~s~~l~~~~L~~~G~~a~~l~~~~~~i~t~~~~~~~~~~~~~~~~~i~~ll~~g~ipVv~G~~g~ 196 (473)
T 3c1m_A 117 LTPKSRDYILSFGERLSSPILSGAIRDLGEKSIALEGGEAGIITDNNFGSARVKRLEVKERLLPLLKEGIIPVVTGFIGT 196 (473)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEECHHHHTEEECSCTTSCCEEEECHHHHHHHHHHTTCEEEEESSEEE
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEchheeEEEccCCCCccccHhhhHHHHHHHHhCCcEEEEeCCccc
Confidence 45666899999999999999999999999999999999884332 11 13578888999999999998732
Q ss_pred ----C----CCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccccccHHHHhcC---CcCcchHHHHHHH
Q 028621 94 ----N----PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLC 162 (206)
Q Consensus 94 ----~----~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~---g~~~~k~~a~~~a 162 (206)
. .++++|++|+++|.+|+||+|++||||||||++||+.+|++++|+++++.|+.++ |.++|+++++.+|
T Consensus 197 ~~~g~~~~l~rg~sD~~Aa~lA~~l~Ad~l~i~TDVdGv~~~dP~~~~~a~~i~~is~~e~~~l~~~g~~~m~~~a~~~a 276 (473)
T 3c1m_A 197 TEEGYITTLGRGGSDYSAALIGYGLDADIIEIWTDVSGVYTTDPRLVPTARRIPKLSYIEAMELAYFGAKVLHPRTIEPA 276 (473)
T ss_dssp ETTSCEEECCTTTHHHHHHHHHHHTTCSEEEEEESSSSCBSSCTTTCTTCCBCSEEEHHHHHHHHHTTCTTSCGGGHHHH
T ss_pred CCCCCEEEeCCCChHHHHHHHHHHcCCCEEEEeeCCCcceeCCCCCCCCCeEecccCHHHHHHHHhcCCcchHHHHHHHH
Confidence 1 3579999999999999999999999999999999999999999999999988764 7888999999999
Q ss_pred HhCCCcEEEEcCCCCchHHHHhcCCCcceEEecCC
Q 028621 163 QENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGTW 197 (206)
Q Consensus 163 ~~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~~~~ 197 (206)
.++|+|++|.|+++|+ ..||+|.++.
T Consensus 277 ~~~gi~v~I~~~~~~~---------~~GT~i~~~~ 302 (473)
T 3c1m_A 277 MEKGIPILVKNTFEPE---------SEGTLITNDM 302 (473)
T ss_dssp HHHTCCEEEEETTSTT---------SCCEEEESCC
T ss_pred HHcCCEEEEEecCCCC---------CceEEEeccc
Confidence 9999999999999986 6899999754
No 32
>2cdq_A Aspartokinase; aspartate kinase, amino acid metabolism, ACT domain, alloste S-adenosylmethionine, lysine, allosteric effector, plant; HET: TAR SAM LYS; 2.85A {Arabidopsis thaliana} SCOP: c.73.1.3 d.58.18.10 d.58.18.10
Probab=99.95 E-value=1.2e-27 Score=215.48 Aligned_cols=165 Identities=22% Similarity=0.275 Sum_probs=142.1
Q ss_pred CCChhhhhHHHHHHHHHHHHHHHHHHHhCCCCceEecccccccccc-h---------h---HHHHHHH-HhhCCCEEEEe
Q 028621 24 GLDRSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAE-P---------Y---IRRRAVR-HLEKGRVVIFA 89 (206)
Q Consensus 24 ~l~~~~~~~~~~~~~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~-~---------~---~~~~l~~-~l~~g~ipvi~ 89 (206)
..+++..|.+.+.|+++|+.+++.+|+++|+++.++++.+++.+.+ . . ..+.+.+ +++.|.|||++
T Consensus 134 ~~~~r~~d~l~s~GE~~s~~ll~~~L~~~Gi~A~~l~~~~~~l~t~~~~~~~~i~~~~~~~~~~~l~~~Ll~~g~IpVv~ 213 (510)
T 2cdq_A 134 ELTLRTRDYLVSFGECLSTRIFAAYLNTIGVKARQYDAFEIGFITTDDFTNGDILEATYPAVAKRLYDDWMHDPAVPIVT 213 (510)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEECGGGTTCEECSCSTTCCBCTTHHHHHHHHHHHHHHHSCCEEEEE
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEhhHeeEEEecCCCccchhhHHHHHHHHHHHHHHHhCCcEEEEe
Confidence 3466778999999999999999999999999999999999844321 1 1 2355554 67899999999
Q ss_pred CCCC----C------CCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccccccHHHHhcC---CcCcchH
Q 028621 90 AGTG----N------PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDM 156 (206)
Q Consensus 90 g~~g----~------~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~---g~~~~k~ 156 (206)
||.| + .+++||++|+.+|.+|+|+++++||||||||++||+.+|++++|++++++|+.++ |.++|++
T Consensus 214 Gf~g~~~~~g~ittlgrGgsD~tAa~lA~~l~Ad~l~i~TDVdGVytaDPr~v~~A~~I~~Is~~E~~ela~~Ga~vmh~ 293 (510)
T 2cdq_A 214 GFLGKGWKTGAVTTLGRGGSDLTATTIGKALGLKEIQVWKDVDGVLTCDPTIYKRATPVPYLTFDEAAELAYFGAQVLHP 293 (510)
T ss_dssp SSEEEETTTCCEEECCTTHHHHHHHHHHHHHTCSEEEEEESSSSSBSSCTTTCTTCCBCCEEEHHHHHHHHHHHSSCCCH
T ss_pred CccccCCCCCceEEeCCCChHHHHHHHHHHcCCCEEEEEeCCCCcCCCCCCCCCCCEEecEeCHHHHHHHHhcCcchhHH
Confidence 9632 1 2466999999999999999999999999999999999999999999999998876 7889999
Q ss_pred HHHHHHHhCCCcEEEEcCCCCchHHHHhcCCCcceEEecCC
Q 028621 157 TAITLCQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGTW 197 (206)
Q Consensus 157 ~a~~~a~~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~~~~ 197 (206)
+|+.+|.++|+|++|.|+++|+ ..||+|.++.
T Consensus 294 ~a~~~a~~~gIpv~I~n~~~p~---------~~GT~I~~~~ 325 (510)
T 2cdq_A 294 QSMRPAREGEIPVRVKNSYNPK---------APGTIITKTR 325 (510)
T ss_dssp HHHHHHHHHTCCEEEEETTSTT---------SCCEEEESCC
T ss_pred HHHHHHHHCCCeEEEEccCcCC---------CCCeEEeccc
Confidence 9999999999999999999986 5899999753
No 33
>2we5_A Carbamate kinase 1; arginine catabolism, arginine metabolism, ATP synthesys, open alpha/beta sheet, phosphotransferase, transferase; HET: ADP; 1.39A {Enterococcus faecalis} PDB: 1b7b_A 2we4_A*
Probab=99.95 E-value=1.2e-27 Score=203.72 Aligned_cols=117 Identities=19% Similarity=0.211 Sum_probs=101.2
Q ss_pred HHHHHHHhhCCCEEEEeCCCCC-----------CCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccccc
Q 028621 73 RRRAVRHLEKGRVVIFAAGTGN-----------PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTL 141 (206)
Q Consensus 73 ~~~l~~~l~~g~ipvi~g~~g~-----------~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~~i 141 (206)
.+.++.+|++|.|||++|+.|. .++|+|++|+++|.+|+||+|+|+|||||||+ || .+|++++|+++
T Consensus 172 ~~~i~~lL~~g~IpIi~Gg~Gipv~~~~~~g~~~~~~~D~~Aa~lA~~l~Ad~LiilTdVdGVy~-dp-~~~~a~~i~~i 249 (310)
T 2we5_A 172 AETINTLIKNDIITISCGGGGIPVVGQELKGVEAVIDKDFASEKLAELVDADALVILTGVDYVCI-NY-GKPDEKQLTNV 249 (310)
T ss_dssp HHHHHHHHHTTCEEECCGGGCEEEETTTTEECCCCCCHHHHHHHHHHHTTCSEEEEECSCSSCEE-ST-TSTTCEECCEE
T ss_pred HHHHHHHHHCCCEEEEECCCCCCCcCCCCCCcEeecCHHHHHHHHHHHcCCCEEEEEeCchHhhC-CC-CCCCCeECCEE
Confidence 5789999999999999965332 24899999999999999999999999999999 77 48889999999
Q ss_pred cHHHHhcC--------CcCcchHHHHHHHHhCCC--cEEEEcCCCCchHHHHhcCCCcceEEe
Q 028621 142 TYQEVTSK--------DLSVMDMTAITLCQENNI--PVVVFNLNQPGNIAKAIQGERVGTLIG 194 (206)
Q Consensus 142 ~~~e~~~~--------g~~~~k~~a~~~a~~~gi--~v~I~~g~~~~~l~~~l~g~~~GT~i~ 194 (206)
+++|+.++ |.+..|++||..+.++|+ +++|++ +++|.++|+|+..||+|.
T Consensus 250 ~~~e~~~~~~~g~~~~GgM~~Kv~aa~~a~~~gv~~~v~I~~---~~~l~~~l~g~~~GT~i~ 309 (310)
T 2we5_A 250 TVAELEEYKQAGHFAPGSMLPKIEAAIQFVESQPNKQAIITS---LENLGSMSGDEIVGTVVT 309 (310)
T ss_dssp EHHHHHHHHHTTCSCTTTTHHHHHHHHHHHHHSTTCEEEEEC---SGGGGGCBTTBCCSEEEE
T ss_pred cHHHHHHHhhCCCCCCCChHHHHHHHHHHHHcCCCceEEECc---HHHHHHHHcCCCCCeEEe
Confidence 99988754 223349999999999999 799996 677889999998999996
No 34
>4ab7_A Protein Arg5,6, mitochondrial; transferase, arginine biosynthesis, amino acid kinase domain GCN5-related acetyltransferase, GNAT; HET: NLG; 3.25A {Saccharomyces cerevisiae} PDB: 3zzi_A*
Probab=99.95 E-value=8.1e-27 Score=207.29 Aligned_cols=184 Identities=14% Similarity=0.171 Sum_probs=140.6
Q ss_pred ceEEEEEcCChhhhhhhhhhcCCCChhh-----------hhHHHHHHHHHHHHHHHHHHHhCCCCceEeccc--------
Q 028621 2 FQVAIVVGGGNIFRGASAAGNSGLDRSS-----------ADYIGMLATVMNAIFLQATMESIGIPTRVQTAF-------- 62 (206)
Q Consensus 2 ~~~iiVhGGG~~~~~~~~~~~~~l~~~~-----------~~~~~~~~~~~~~~ll~~~l~~~gi~a~~l~~~-------- 62 (206)
.++|||||||++++. .++++|+++++ ++.+.+....+|..++.. |+++|++++++++.
T Consensus 79 ~~~VvVHGgG~~i~~--~l~~~gi~~~f~~G~RvTd~~tl~vv~mv~~~vn~~lv~~-L~~~G~~Avglsgg~~~a~~~~ 155 (464)
T 4ab7_A 79 LYPIVLHGTGPQVNG--RLEAQGIEPDYIDGIRITDEHTMAVVRKCFLEQNLKLVTA-LEQLGVRARPITSGVFTADYLD 155 (464)
T ss_dssp CCCEEEECCCHHHHH--HHHHTTCCCCEETTEECBCHHHHHHHHHHHHHHHHHHHHH-HHHTTCCEEEECSSSEEEEESC
T ss_pred CeEEEEECCcHHHHH--HHHHcCCCccccCCeecCCHHHHHHHHHHHHHHHHHHHHH-HHhCCCCeEEECCCcEEEEecC
Confidence 468999999999877 45667776432 455666556899888775 77899999999862
Q ss_pred --ccccccchh--HHHHHHHHhhCCCEEEEeCC----CCCC-CCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCC
Q 028621 63 --RMSEVAEPY--IRRRAVRHLEKGRVVIFAAG----TGNP-FFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNP 133 (206)
Q Consensus 63 --~~~~v~~~~--~~~~l~~~l~~g~ipvi~g~----~g~~-~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~ 133 (206)
+++++++.. ..+.++.+|++|.|||++|+ .|.. ++++|++|+.+|.+|+|++|+|+|||||||++ |
T Consensus 156 ~~d~g~vG~I~~v~~~~I~~lL~~G~IPVi~~~g~~~~G~~~ni~~D~~Aa~lA~~L~Ad~Li~lTdV~GV~~~-----~ 230 (464)
T 4ab7_A 156 KDKYKLVGNIKSVTKEPIEASIKAGALPILTSLAETASGQMLNVNADVAAGELARVFEPLKIVYLNEKGGIING-----S 230 (464)
T ss_dssp TTTTBSBEEEEEECCHHHHHHHHTTCEEEEESEEECTTCBEEECCHHHHHHHHHHHHCCSEEEEEESSCSEECT-----T
T ss_pred ccccCCcCcccccCHHHHHHHHHCCcEEEEcCCcCCCCCCEEEecHHHHHHHHHHHcCCCEEEEEecccccccC-----C
Confidence 122222211 14788999999999999985 3433 58999999999999999999999999999986 3
Q ss_pred CCcccccccHHH-HhcC-----CcCcc--hHHHHHHHHhC---CCcEEEEcCCCCchH-HHHhcCCCcceEEecC
Q 028621 134 NARLLDTLTYQE-VTSK-----DLSVM--DMTAITLCQEN---NIPVVVFNLNQPGNI-AKAIQGERVGTLIGGT 196 (206)
Q Consensus 134 ~a~~i~~i~~~e-~~~~-----g~~~~--k~~a~~~a~~~---gi~v~I~~g~~~~~l-~~~l~g~~~GT~i~~~ 196 (206)
++++|++++..| +.++ ..++| |+++++.|.+. +.+++|++ ++.+ .++|+++++||+|.++
T Consensus 231 ~~~lI~~it~~e~~~~li~~~~~tgGM~pKl~aa~aa~~~v~~g~~v~I~~---~~~ll~eLft~~g~GT~I~~~ 302 (464)
T 4ab7_A 231 TGEKISMINLDEEYDDLMKQSWVKYGTKLKIREIKELLDYLPRSSSVAIIN---VQDLQKELFTDSGAGTMIRRG 302 (464)
T ss_dssp TCCEECEEEHHHHHHHHHTCSSCCHHHHHHHHHHHHHHTTSCTTCEEEEEE---STTHHHHTTSSSTTSEEEECC
T ss_pred CCcCCcccCHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcccCcEEEEec---ChHHHHHHhcCCCCceEEecC
Confidence 579999999875 3322 23445 77877666654 77899998 5655 4789999999999987
No 35
>3d2m_A Putative acetylglutamate synthase; protein-COA-Glu ternary complex, transferase; HET: COA GLU; 2.21A {Neisseria gonorrhoeae} PDB: 2r8v_A* 3b8g_A* 2r98_A* 3d2p_A*
Probab=99.95 E-value=1e-26 Score=207.24 Aligned_cols=186 Identities=17% Similarity=0.149 Sum_probs=141.8
Q ss_pred ceEEEEEcCChhhhhhhhhhcCCCCh-----------hhhhHHHHHHHHHHHHHHHHHHHhCCCCc----eEeccccccc
Q 028621 2 FQVAIVVGGGNIFRGASAAGNSGLDR-----------SSADYIGMLATVMNAIFLQATMESIGIPT----RVQTAFRMSE 66 (206)
Q Consensus 2 ~~~iiVhGGG~~~~~~~~~~~~~l~~-----------~~~~~~~~~~~~~~~~ll~~~l~~~gi~a----~~l~~~~~~~ 66 (206)
+++|||||||++++. ..+++++.. ..++.+.+....+|..+++ .|+ +|+++ +.+++.+...
T Consensus 75 ~~vvlVhggg~~~~~--~~~~~~~~~~~~~g~r~t~~~~l~~~~~~~G~~~~~l~~-~l~-~g~~~~~~~~~l~~~~~~~ 150 (456)
T 3d2m_A 75 IRLVLIHGAYHFLDR--LAAAQGRTPHYCRGLRVTDETSLGQAQQFAGTVRSRFEA-ALC-GSVSGFARAPSVPLVSGNF 150 (456)
T ss_dssp CEEEEEECCHHHHHT--TTTTTTCCCCCGGGCCCBCHHHHHHHHHHHHHHHHHHHH-HHH-TC--------CCCEECCSC
T ss_pred CeEEEEeCCcHHHHH--HHHHCCCCCEeeCCeecCCHHHHHHHHHHHhHHHHHHHH-HHh-cccccCCCccceeeccCcE
Confidence 579999999999655 345566553 3345554445688887766 577 88888 6666665322
Q ss_pred cc----------------ch--hHHHHHHHHhhCCCEEEEeCC----CCC-CCCCcHHHHHHHHHhcCCcEEEEeeccCc
Q 028621 67 VA----------------EP--YIRRRAVRHLEKGRVVIFAAG----TGN-PFFTTDTAAALRCAEINAEVVLKATNVDG 123 (206)
Q Consensus 67 v~----------------~~--~~~~~l~~~l~~g~ipvi~g~----~g~-~~~~sD~~A~~lA~~l~A~~li~ltdV~G 123 (206)
+. +. ...+.++.+|++|.|||++|+ .|. .++++|++|+++|.+|+||+|+|+|||||
T Consensus 151 ~~~~~~~~~~~~d~g~~g~v~~v~~~~i~~lL~~g~ipIi~~~~~~~~g~~~~~~~D~~Aa~lA~~l~Ad~li~lTdvdG 230 (456)
T 3d2m_A 151 LTARPIGVIDGTDMEYAGVIRKTDTAALRFQLDAGNIVWMPPLGHSYGGKTFNLDMVQAAASVAVSLQAEKLVYLTLSDG 230 (456)
T ss_dssp EEEEECCEETTEECBTBEEEEEECHHHHHHHHHTTCEEEECSEEECTTSCEEECCHHHHHHHHHHHHTCSEEEEEESSSS
T ss_pred EEEEEcccccCcccCceeeEEEECHHHHHHHHHCCCeEEECCcccCCCCCEEEECHHHHHHHHHHHcCCCEEEEEECCcc
Confidence 11 11 114789999999999999985 343 35899999999999999999999999999
Q ss_pred cccCCCCCCCCCcccccccHHHHhcC---CcCcc--hHHHHHHHHhCCCc-EEEEcCCCCchH-HHHhcCCCcceEEecC
Q 028621 124 VYDDNPRRNPNARLLDTLTYQEVTSK---DLSVM--DMTAITLCQENNIP-VVVFNLNQPGNI-AKAIQGERVGTLIGGT 196 (206)
Q Consensus 124 v~~~dP~~~~~a~~i~~i~~~e~~~~---g~~~~--k~~a~~~a~~~gi~-v~I~~g~~~~~l-~~~l~g~~~GT~i~~~ 196 (206)
||++ ++++|+++++.|+.++ |.++| |++||..|.+.|++ ++|+|+++|++| .+++++++.||+|.++
T Consensus 231 v~~~------~~~~i~~i~~~e~~~~~~~g~ggm~~Kl~aa~~a~~~gv~~v~I~~~~~~~~ll~~l~~~~~~GT~i~~~ 304 (456)
T 3d2m_A 231 ISRP------DGTLAETLSAQEAQSLAEHAASETRRLISSAVAALEGGVHRVQILNGAADGSLLQELFTRNGIGTSIAKE 304 (456)
T ss_dssp CBCT------TSCBCSEEEHHHHHHHHTTCCHHHHHHHHHHHHHHHTTCSEEEEEETTSTTHHHHHHHCSSCSSEEEECC
T ss_pred ccCC------CCCccccCCHHHHHHHHhccCCChHHHHHHHHHHHHhCCCEEEEecCcCCchHHHHHHhhcCCceeeecc
Confidence 9986 4789999999887754 33445 88999999999995 999999999998 5788999999999875
Q ss_pred C
Q 028621 197 W 197 (206)
Q Consensus 197 ~ 197 (206)
.
T Consensus 305 ~ 305 (456)
T 3d2m_A 305 A 305 (456)
T ss_dssp C
T ss_pred c
Confidence 4
No 36
>3s6g_A N-acetylglutamate kinase / N-acetylglutamate SYNT; synthase, transferase; HET: COA; 2.67A {Maricaulis maris} PDB: 3s7y_A 3s6h_A*
Probab=99.94 E-value=5.7e-27 Score=208.44 Aligned_cols=186 Identities=17% Similarity=0.190 Sum_probs=144.5
Q ss_pred ceEEEEEcCChhhhhhhhhhcCCCChh-----------hhhHHHHHHHHHHHHHHHHHHHhCCCCceEeccccc------
Q 028621 2 FQVAIVVGGGNIFRGASAAGNSGLDRS-----------SADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRM------ 64 (206)
Q Consensus 2 ~~~iiVhGGG~~~~~~~~~~~~~l~~~-----------~~~~~~~~~~~~~~~ll~~~l~~~gi~a~~l~~~~~------ 64 (206)
.++|||||||++++. .+++++++++ .++.+.+....+|..|++ +|++.|++++++++..+
T Consensus 89 ~~~VvVHGgG~~i~~--~l~~~gi~~~f~~G~RvTd~~~l~vv~~~lg~vn~~lv~-aL~~~G~~Av~lsg~~~~a~~~~ 165 (460)
T 3s6g_A 89 LTPVVVHGGGPQLDA--ALEAADIPTERVDGLRVTRDEAMPIIRDTLTQANLALVD-AIRDAGGRAAAVPRGVFEADIVD 165 (460)
T ss_dssp CCCEEEECCHHHHHH--HHHHHSCCCCCCSSSCCBCTTTHHHHHHHHHHHHHHHHH-HHHHTTCCEEEECSSSEEEEESC
T ss_pred CcEEEEECCChHHHH--HHHHcCCCccccCCccCCCHHHHHHHHHHHHHHHHHHHH-HHHhCCCCceEEecCeEEEEEec
Confidence 468999999999776 4566666543 345555544599999988 47889999999988322
Q ss_pred ----ccccchh--HHHHHHHHhhCCCEEEEeCC----CCCC-CCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCC
Q 028621 65 ----SEVAEPY--IRRRAVRHLEKGRVVIFAAG----TGNP-FFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNP 133 (206)
Q Consensus 65 ----~~v~~~~--~~~~l~~~l~~g~ipvi~g~----~g~~-~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~ 133 (206)
+.+++.. ..+.++.+|++|.|||++|+ .|.. ++++|++|+++|.+|+||+|+|+|||||||++
T Consensus 166 ~~d~g~~G~I~~v~~~~i~~lL~~g~IpVi~p~g~~~~G~~~~i~~D~~Aa~lA~~L~Ad~LiilTdv~Gv~~~------ 239 (460)
T 3s6g_A 166 ADKLGRVGEPRHIHLDLVGSAARAGQAAILACLGETPDGTLVNINADVAVRALVHALQPYKVVFLTGTGGLLDE------ 239 (460)
T ss_dssp TTTTBSEEEEEEECCHHHHHHHHTTCEEEEECEEECTTCCEEEECHHHHHHHHHHHHCCSEEEEECSSCSCBCT------
T ss_pred CcccCccCcceEEcHHHHHHHHHCCcEEEEECceECCCCcEEecCHHHHHHHHHHHcCCCEEEEEeCCccccCC------
Confidence 1122111 14789999999999999975 3433 58999999999999999999999999999985
Q ss_pred CCcccccccHH-HHhcC-----CcCcc--hHHHHHHHHhCCCcEEEEcCCCCchHH-HHhcCCCcceEEecC
Q 028621 134 NARLLDTLTYQ-EVTSK-----DLSVM--DMTAITLCQENNIPVVVFNLNQPGNIA-KAIQGERVGTLIGGT 196 (206)
Q Consensus 134 ~a~~i~~i~~~-e~~~~-----g~~~~--k~~a~~~a~~~gi~v~I~~g~~~~~l~-~~l~g~~~GT~i~~~ 196 (206)
++++|++++.. |+.++ ..++| |++++..+.+.+.+++|++++.|+.|. ++++++++||+|.++
T Consensus 240 ~~~lI~~i~~~~e~~~l~~~~~~tGGM~~Kl~aa~~a~~gv~~v~iv~g~~~~~Ll~eLft~~g~GT~i~~~ 311 (460)
T 3s6g_A 240 DGDILSSINLATDFGDLMQADWVNGGMRLKLEEIKRLLDDLPLSSSVSITRPSELARELFTHAGSGTLIRRG 311 (460)
T ss_dssp TSSBCCEEEHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHTSCTTCEEEEECGGGHHHHHHSSCCSSEEEECC
T ss_pred CCeecceeCcHHHHHHHHhcCCCCCcHHHHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHhcCCCCceEEEcC
Confidence 36899999985 55433 23444 999998888744469999999999986 789999999999986
No 37
>1e19_A Carbamate kinase-like carbamoylphosphate synthetase; transferase, hyperthermophiles, ADP site, phosphoryl group transfer; HET: ADP; 1.5A {Pyrococcus furiosus} SCOP: c.73.1.1
Probab=99.94 E-value=1.1e-26 Score=198.21 Aligned_cols=185 Identities=17% Similarity=0.252 Sum_probs=133.5
Q ss_pred ceEEEEEcCChhhhhhhhhhcCC-------CChhhhhHHHH-----HHHHHHHHHHHHHHHhCCCCc--------eEecc
Q 028621 2 FQVAIVVGGGNIFRGASAAGNSG-------LDRSSADYIGM-----LATVMNAIFLQATMESIGIPT--------RVQTA 61 (206)
Q Consensus 2 ~~~iiVhGGG~~~~~~~~~~~~~-------l~~~~~~~~~~-----~~~~~~~~ll~~~l~~~gi~a--------~~l~~ 61 (206)
+++|||||||+++.... ++++ .++..++...+ +...++..+ +..|+++|+++ +.+++
T Consensus 45 ~~vVlVhGgg~~i~~~l--~~~~~~~~~~~~~~~~l~~~~a~~~G~i~~~l~~~l-~~~l~~~gi~a~~~~~~~qv~l~~ 121 (314)
T 1e19_A 45 YEVVITHGNGPQVGSLL--LHMDAGQATYGIPAQPMDVAGAMSQGWIGYMIQQAL-KNELRKRGMEKKVVTIITQTIVDK 121 (314)
T ss_dssp CEEEEECCCHHHHHHHH--HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHTTCCCCEEEBCCEEEECT
T ss_pred CeEEEEeCChHHHhHHH--HhccCccccCCCChhHHHHHHHHHhhHHHHHHHHHH-HHHHHHcCCchhhhhhheeeeecc
Confidence 58999999999965432 3333 23334444432 333564444 44578899987 55666
Q ss_pred ccc-------------------------ccc--cc-------------h---hHHHHHHHHhhCCCEEEEeCCCCC----
Q 028621 62 FRM-------------------------SEV--AE-------------P---YIRRRAVRHLEKGRVVIFAAGTGN---- 94 (206)
Q Consensus 62 ~~~-------------------------~~v--~~-------------~---~~~~~l~~~l~~g~ipvi~g~~g~---- 94 (206)
.|. +++ ++ + ...+.++.+|++|.|||++|+.|.
T Consensus 122 ~d~~f~~~~k~~g~~~t~~~a~~~~~~~g~~~~g~~~~~~~~~v~s~~~i~~v~~~~i~~lL~~g~IpV~~Gg~giPi~~ 201 (314)
T 1e19_A 122 NDPAFQNPTKPVGPFYDEETAKRLAREKGWIVKEDSGRGWRRVVPSPDPKGHVEAETIKKLVERGVIVIASGGGGVPVIL 201 (314)
T ss_dssp TCGGGTSCCEEEEEEECHHHHHHHHHHHCCEEEECTTSCEEEEECCCCEEEETTHHHHHHHHHTTCEEECSGGGCEEEEE
T ss_pred cchhhccccccccceecHHHhhhhhhhcCccccccccccccccccCcccceeehHHHHHHHHHCCCEEEEeCCCccCeEE
Confidence 551 111 11 0 024678999999999998754221
Q ss_pred ---------CCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccccccHHHHhcC------CcCcc--hHH
Q 028621 95 ---------PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK------DLSVM--DMT 157 (206)
Q Consensus 95 ---------~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~------g~~~~--k~~ 157 (206)
.++++|++|+++|.+|+||+|+|+|||||||++|| +|++++|++++++|+.++ +.++| |++
T Consensus 202 ~~d~~~g~~~~~d~D~~Aa~lA~~l~Ad~li~lTdVdGvy~~~p--~~~a~~i~~i~~~e~~~~~~~g~~~~GgM~~Kv~ 279 (314)
T 1e19_A 202 EDGEIKGVEAVIDKDLAGEKLAEEVNADIFMILTDVNGAALYYG--TEKEQWLREVKVEELRKYYEEGHFKAGSMGPKVL 279 (314)
T ss_dssp ETTEEEECCCCCCHHHHHHHHHHHTTCSEEEEEESSSSCEETTT--STTCEECCEEEHHHHHHHHHTTCSCTTTHHHHHH
T ss_pred CCCCcceeEEeccHHHHHHHHHHHcCCCEEEEeccCCEEECCCC--CCCCeECCEECHHHHHHHHhCCCcCCCChHHHHH
Confidence 25889999999999999999999999999999998 588999999999988754 23445 888
Q ss_pred HHHH-HHhCCCcEEEEcCCCCchHHHHhcCCCcceEEec
Q 028621 158 AITL-CQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGG 195 (206)
Q Consensus 158 a~~~-a~~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~~ 195 (206)
+|.. +.+.+++++|++. +.|.++|+| +.||+|.+
T Consensus 280 aa~~~~~~~~~~v~I~~~---~~l~~~~~g-~~GT~i~~ 314 (314)
T 1e19_A 280 AAIRFIEWGGERAIIAHL---EKAVEALEG-KTGTQVLP 314 (314)
T ss_dssp HHHHHHHHTCSEEEEEEG---GGHHHHHTT-SSSEEEEC
T ss_pred HHHHHHHhCCCeEEEecH---HHHHHHHcC-CCCeEEcC
Confidence 8866 4556778999984 568899998 48999974
No 38
>3tvi_A Aspartokinase; structural genomics, ACT domains, regulatory domains, kinase transferase, PSI-2, protein structure initiative; HET: LYS; 3.00A {Clostridium acetobutylicum}
Probab=99.94 E-value=2.6e-26 Score=203.77 Aligned_cols=155 Identities=20% Similarity=0.258 Sum_probs=133.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhCCCCceEecccccccccch------hHHHHHHHHhhCCCEEEEeCCCC---------
Q 028621 29 SADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEP------YIRRRAVRHLEKGRVVIFAAGTG--------- 93 (206)
Q Consensus 29 ~~~~~~~~~~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~~------~~~~~l~~~l~~g~ipvi~g~~g--------- 93 (206)
..|.+.+.||++|+.+++.+| ++.++++++++.+++. ...+.++.+|+.|.|||++||.|
T Consensus 108 ~~D~lls~GE~lS~~lla~~l-----~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~v~Vv~Gf~g~~~~g~~~t 182 (446)
T 3tvi_A 108 SSDYAASRGEYLNGVILAKYL-----NAEFIDAAEVIFFDKSGCFDEKKSYEKIKEKVLSCNKAVIPGFYGSSFNGDVKT 182 (446)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH-----TCEECCGGGTCBBCC--CBCHHHHHHHHHHHTTTCSSEECCCSEEECTTSCEEE
T ss_pred cHHHHHHhHHHHHHHHHHHHh-----cceeECHHHheeeCCCCceehHhhHHHHHHHHhcCCeEEeeCceecCCCCCeEE
Confidence 468888999999999999986 4788888888776542 23578899999999999999732
Q ss_pred CCCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccccccHHHHhcC---CcCcchHHHHHHHHhCCCcEE
Q 028621 94 NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITLCQENNIPVV 170 (206)
Q Consensus 94 ~~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~---g~~~~k~~a~~~a~~~gi~v~ 170 (206)
..+++||++|+.+|.+|+|+++++||||||||++||+.+|++++|++++++|+.++ |.++||++|+.+|.++|+|++
T Consensus 183 l~rGgsD~~Aa~lA~~l~A~~~~i~TDVdGvyt~dP~~~~~a~~i~~is~~e~~ela~~Ga~vl~~~a~~~a~~~~ipi~ 262 (446)
T 3tvi_A 183 FSRGGSDVTGSIISAGVNADLYENWTDVSGFLMADPRIVENPKTISKISYKELRELSYMGATVLHEEAIFPVKDSGIPIN 262 (446)
T ss_dssp CSSSTTHHHHHHHHHHTTCSEEEEEESSSSCBSSCTTTSSSCCBCSEEEHHHHHHTTTC----CCSTTTHHHHHSSCCEE
T ss_pred EccCCchHHHHHHHHHcCCCEEEEEeCCCccCCCCCCcCCCCeEcceeCHHHHHHHHhCCCCcchHHHHHHHHHcCCeEE
Confidence 13578999999999999999999999999999999999999999999999999876 778899999999999999999
Q ss_pred EEcCCCCchHHHHhcCCCcceEEecCC
Q 028621 171 VFNLNQPGNIAKAIQGERVGTLIGGTW 197 (206)
Q Consensus 171 I~~g~~~~~l~~~l~g~~~GT~i~~~~ 197 (206)
|.|+++|+ ..||+|.++.
T Consensus 263 i~~~~~p~---------~~GT~i~~~~ 280 (446)
T 3tvi_A 263 IKNTNKPS---------DPGTLILSDT 280 (446)
T ss_dssp EEETTBTT---------SCCEEEECTT
T ss_pred EecCCCCC---------CCCEEEecCC
Confidence 99999986 5799999764
No 39
>2j0w_A Lysine-sensitive aspartokinase 3; feedback inhibition, allosteric regulation, ACT domain, transferase, amino acid biosynthesis; HET: ADP; 2.5A {Escherichia coli} SCOP: c.73.1.3 d.58.18.10 d.58.18.10 PDB: 2j0x_A*
Probab=99.94 E-value=3e-26 Score=203.83 Aligned_cols=161 Identities=19% Similarity=0.235 Sum_probs=136.2
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhCCCCceEecccccccccch------h---H----HHHHHHHhhCCCEEEEeCCCC
Q 028621 27 RSSADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRMSEVAEP------Y---I----RRRAVRHLEKGRVVIFAAGTG 93 (206)
Q Consensus 27 ~~~~~~~~~~~~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~~------~---~----~~~l~~~l~~g~ipvi~g~~g 93 (206)
++..|.+.+.|+.+|+.+++.+|+++|+++.++++.++....+. + . .+.++.+++ +.|||++||.|
T Consensus 108 ~~~~d~l~s~Ge~~s~~l~~~~L~~~Gi~a~~l~~~~~l~t~~~~~~~~~~~~~~~~~~~~~l~~l~~-~~IpVv~Gf~g 186 (449)
T 2j0w_A 108 PALTDELVSHGELMSTLLFVEILRERDVQAQWFDVRKVMRTNDRFGRAEPDIAALAELAALQLLPRLN-EGLVITQGFIG 186 (449)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSCCEEECCGGGTCBBCSCTTSCCBCHHHHHHHHHHHTHHHHH-HSEEEEESSEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEchHHheeecCCCCCccccHhHhHHHHHHHHHHHhc-CCEEEEeCCee
Confidence 56678999999999999999999999999999999998433211 1 1 224445554 44999998733
Q ss_pred -----C----CCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccccccHHHHhcC---CcCcchHHHHHH
Q 028621 94 -----N----PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSK---DLSVMDMTAITL 161 (206)
Q Consensus 94 -----~----~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~---g~~~~k~~a~~~ 161 (206)
. .+++||++|+++|.+|+|++|++||||||||++||+.+|++++|++++++|+.++ |.++++++|+.+
T Consensus 187 ~~~~g~~ttl~rGgsD~~Aa~lA~~l~Ad~l~i~TDVdGv~~~DPr~~~~a~~i~~is~~e~~ela~~G~kvlh~~a~~~ 266 (449)
T 2j0w_A 187 SENKGRTTTLGRGGSDYTAALLAEALHASRVDIWTDVPGIYTTDPRVVSAAKRIDEIAFAEAAEMATFGAKVLHPATLLP 266 (449)
T ss_dssp ECTTSCEEECCTTHHHHHHHHHHHHTTCSEEEEEESSSSEESSCTTTCTTCCEESEEEHHHHHHHHHTTCTTSCTTTHHH
T ss_pred eCCCCCEEEeCCCChHHHHHHHHHHCCCCEEEEccccCCcCcCCCCCCCCCEEccCccHHHHHHHHhcCCccchHHHHHH
Confidence 1 2567999999999999999999999999999999999999999999999998875 777888899999
Q ss_pred HHhCCCcEEEEcCCCCchHHHHhcCCCcceEEecCC
Q 028621 162 CQENNIPVVVFNLNQPGNIAKAIQGERVGTLIGGTW 197 (206)
Q Consensus 162 a~~~gi~v~I~~g~~~~~l~~~l~g~~~GT~i~~~~ 197 (206)
|.+.|+|++|.|+++|+ ..||+|.++.
T Consensus 267 a~~~gi~v~I~~~~~p~---------~~GT~I~~~~ 293 (449)
T 2j0w_A 267 AVRSDIPVFVGSSKDPR---------AGGTLVCNKT 293 (449)
T ss_dssp HHHHTCCEEEEESSCTT---------SCCEEEESCC
T ss_pred HHHCCCeEEEEECCCCC---------CCeeEEeccc
Confidence 99999999999999986 6899999764
No 40
>3l86_A Acetylglutamate kinase; ARGB, amino-acid biosynthesis, arginine biosynthesi binding, nucleotide-binding, transferase; HET: ADP NLG; 2.06A {Streptococcus mutans}
Probab=99.94 E-value=5e-26 Score=190.85 Aligned_cols=172 Identities=20% Similarity=0.251 Sum_probs=134.0
Q ss_pred ceEEEEEcCChhhhhhhhhhcCCCChhh-----------hhHHHH-HHHHHHHHHHHHHHHhCCCCceEecccccccccc
Q 028621 2 FQVAIVVGGGNIFRGASAAGNSGLDRSS-----------ADYIGM-LATVMNAIFLQATMESIGIPTRVQTAFRMSEVAE 69 (206)
Q Consensus 2 ~~~iiVhGGG~~~~~~~~~~~~~l~~~~-----------~~~~~~-~~~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~ 69 (206)
+++|||||||++++. ..+++++++++ ++.+.+ ++.++|..+.+ +|+++|+++..+++.+..++..
T Consensus 67 ~~vVlVhgGg~~i~~--~l~~lg~~~~~~~G~Rvtd~~~l~~v~~~l~G~ln~~i~~-~L~~~G~~a~~l~g~dg~llta 143 (279)
T 3l86_A 67 KQLVIVHGGGFAINK--LMEENQVPVKKINGLRVTSKDDMVLVSHALLDLVGKNLQE-KLRQAGVSCQQLKSDIKHVVAA 143 (279)
T ss_dssp CEEEEEECCHHHHHH--HHHHTTCCCCEETTEECBCHHHHHHHHHHHHHTTHHHHHH-HHHHTTCCEEECSGGGGGTEEE
T ss_pred CcEEEEECCHHHHHH--HHHHcCCCCccCCCcccCcHHHHHHHHHHHHHHHHHHHHH-HHHhCCCCEEEEecCcCCEEEe
Confidence 589999999999766 45667776543 233322 44577777766 5888999999999888544431
Q ss_pred h------h---------HHHHHHHHhhCCCEEEEeCC----CCCCC-CCcHHHHHHHHHhcCCcEEEEeeccCccccCCC
Q 028621 70 P------Y---------IRRRAVRHLEKGRVVIFAAG----TGNPF-FTTDTAAALRCAEINAEVVLKATNVDGVYDDNP 129 (206)
Q Consensus 70 ~------~---------~~~~l~~~l~~g~ipvi~g~----~g~~~-~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP 129 (206)
. + ..+.++.+|++|.|||++|. .|..+ +++|++|+++|.+|+||+|+|+|||||||+
T Consensus 144 ~~~~~~d~g~vG~i~~v~~~~i~~lL~~g~IPVi~~v~~~~~G~~~~i~~D~~Aa~lA~~L~Ad~LiilTDVdGV~~--- 220 (279)
T 3l86_A 144 DYLDKDTYGYVGDVTHINKRVIEEFLENRQIPILASLGYSKEGDMLNINADYLATAVAVALAADKLILMTNVKGVLE--- 220 (279)
T ss_dssp EESCHHHHBSBEEEEEECHHHHHHHHHTTCEEEEESEEECTTSCEEECCHHHHHHHHHHHTTCSEEEEECSSSSCEE---
T ss_pred eccCccccCcccccchhhHHHHHHHHhCCcEEEECCcEECCCCCEeecCHHHHHHHHHHHcCCCEEEEEeCCCcccc---
Confidence 0 1 25789999999999999983 34443 699999999999999999999999999995
Q ss_pred CCCCCCcccccccHHHHhcC-----CcCc--chHHHHHHHHhCCCc-EEEEcCCCCchHHHHhcCCCcceEEec
Q 028621 130 RRNPNARLLDTLTYQEVTSK-----DLSV--MDMTAITLCQENNIP-VVVFNLNQPGNIAKAIQGERVGTLIGG 195 (206)
Q Consensus 130 ~~~~~a~~i~~i~~~e~~~~-----g~~~--~k~~a~~~a~~~gi~-v~I~~g~~~~~l~~~l~g~~~GT~i~~ 195 (206)
++++|++++++|+.++ ..++ .|++||..|.+.|++ ++|+|++.+ ||+|..
T Consensus 221 ----d~~~I~~i~~~e~~~l~~~~~~tGGM~~Kl~aa~~a~~~Gv~~v~I~~~~~~------------GT~i~~ 278 (279)
T 3l86_A 221 ----NGAVLEKITSHQVQEKIDTAVITAGMIPKIESAAKTVAAGVGQVLIGDNLLT------------GTLITA 278 (279)
T ss_dssp ----TTEECCEEEGGGSHHHHHTTSSCTTHHHHHHHHHHHHHTTCSEEEEESSSSC------------SEEEEC
T ss_pred ----CCEehhhccHHHHHHHHhCCCCcCcHHHHHHHHHHHHHcCCCEEEEeccCCC------------CeEEec
Confidence 3689999999877653 2344 499999999999997 999998742 999975
No 41
>3s6k_A Acetylglutamate kinase; synthase, transferase; 2.80A {Xanthomonas campestris PV}
Probab=99.92 E-value=1.9e-26 Score=205.28 Aligned_cols=186 Identities=15% Similarity=0.196 Sum_probs=143.1
Q ss_pred ceEEEEEcCChhhhhhhhhhcCCCChh-----------hhhHHHHHHHHHHHHHHHHHHHhCCCCceEeccccc------
Q 028621 2 FQVAIVVGGGNIFRGASAAGNSGLDRS-----------SADYIGMLATVMNAIFLQATMESIGIPTRVQTAFRM------ 64 (206)
Q Consensus 2 ~~~iiVhGGG~~~~~~~~~~~~~l~~~-----------~~~~~~~~~~~~~~~ll~~~l~~~gi~a~~l~~~~~------ 64 (206)
.++|||||||++++. .+++++++++ .++.+.+....+|..|++ +|++.|++++++++..+
T Consensus 92 ~~~VvVHGgg~~i~~--~l~~~gi~~~f~~G~RvTd~~~l~vv~~~~g~vn~~Lv~-aL~~~G~~Av~lsg~~~~a~~~~ 168 (467)
T 3s6k_A 92 LTPIVLHGAGPQLDA--ELSAAGIEKQTVNGLRVTSPHALAIVRKVFQASNLKLVE-ALQQNGARATSITGGVFEAEYLN 168 (467)
T ss_dssp CCCCCCCCCCHHHHH--HHHTTSCCCCCCSSSCCBCHHHHHHHHHHHHHHHHHHHH-HHHHHTCCBCCCCSSSBCCCBSC
T ss_pred CcEEEEECCChHHHH--HHHHcCCCccccCCccCCCHHHHHHHHHHHHHHHHHHHH-HHHhCCCCceEEcCccEEEEecc
Confidence 468999999999777 4566776643 245555544599999988 47789999999887332
Q ss_pred ----ccccchh--HHHHHHHHhhCCCEEEEeCC----CCC-CCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCC
Q 028621 65 ----SEVAEPY--IRRRAVRHLEKGRVVIFAAG----TGN-PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNP 133 (206)
Q Consensus 65 ----~~v~~~~--~~~~l~~~l~~g~ipvi~g~----~g~-~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~ 133 (206)
+++++.. ..+.++.+|++|.|||+++. .|. .++++|++|+.+|.+|+||+|+|+|||||||+++
T Consensus 169 ~~d~g~~G~I~~v~~~~i~~lL~~g~IpVi~pvg~~~~G~~~~i~~D~~Aa~lA~~L~Ad~LiilTdv~Gv~~~~----- 243 (467)
T 3s6k_A 169 RDTYGLVGEVKAVNLAPIEASLQAGSIPVITSLGETPSGQILNVNADFAANELVQELQPYKIIFLTGTGGLLDAE----- 243 (467)
T ss_dssp SSSSBSBBCCCCBCCHHHHTHHHHTCBCCCCSCCCCSSSCCCBCCHHHHHHHHHHHHCCSSCCCCCSSCSCCCSS-----
T ss_pred CcccCccceEEEEcHHHHHHHHHCCCEEEEECceECCCCcEEecCHHHHHHHHHHhcCCCEEEEEecccceeCCC-----
Confidence 1122211 14788999999999999953 243 3589999999999999999999999999999853
Q ss_pred CCcccccccHH-HHhcC-----CcCcc--hHHHHHHHHhCCCcEEEEcCCCCchHH-HHhcCCCcceEEecC
Q 028621 134 NARLLDTLTYQ-EVTSK-----DLSVM--DMTAITLCQENNIPVVVFNLNQPGNIA-KAIQGERVGTLIGGT 196 (206)
Q Consensus 134 ~a~~i~~i~~~-e~~~~-----g~~~~--k~~a~~~a~~~gi~v~I~~g~~~~~l~-~~l~g~~~GT~i~~~ 196 (206)
+++|++++.. |+.++ ..++| |++++..+.+.+.++++++++.|+.|. ++++++++||+|.+.
T Consensus 244 -~~lI~~i~~~~e~~~l~~~~~~tGGM~~Kl~aa~~a~~gv~~~~iv~g~~~~~Ll~eLft~~g~GT~i~~~ 314 (467)
T 3s6k_A 244 -GKLIDSINLSTEYDHLMQQPWINGGMRVKIEQIKDLLDRLPLESSVSITRPADLAKELFTHKGSGTLVRRG 314 (467)
T ss_dssp -CCCCCCCCTTTTTHHHHTSSSCCSHHHHHHHHHHHHHTTSCSSCCBCCCCTTTHHHHHHSSCTTSCCBCCC
T ss_pred -CCCccccChHHHHHHHHhcCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCchHHHHHHhcCCCcceEEeCC
Confidence 5788888874 43322 23444 999998888754469999999999986 689999999999876
No 42
>3kzf_A Carbamate kinase; arginine dihydrolase pathway, giardia LAMB target, transferase; 3.00A {Giardia lamblia atcc 50803}
Probab=99.90 E-value=9.8e-24 Score=178.45 Aligned_cols=118 Identities=19% Similarity=0.262 Sum_probs=97.0
Q ss_pred HHHHHHHhhCCCEEEEeCCCCC-------------CCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccc
Q 028621 73 RRRAVRHLEKGRVVIFAAGTGN-------------PFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLD 139 (206)
Q Consensus 73 ~~~l~~~l~~g~ipvi~g~~g~-------------~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~ 139 (206)
.+.|+.+|++|.|||++|+.|. .++|+|++|+.+|.+|+||+|+|+|||||||+ ||+ .|++++|+
T Consensus 178 ~~~I~~LL~~G~IvI~aGGgGiPv~~~~~~~~G~~~~id~D~~Aa~lA~~L~AD~LIiLTDVdGVy~-dp~-~p~a~~I~ 255 (317)
T 3kzf_A 178 YGVIKTLIDNNVLVICTNGGGIPCKRENKVISGVDAVIDKDLATSLLAKTLNSDYLMILTDVLNACI-NYK-KPDERKLE 255 (317)
T ss_dssp HHHHHHHHHTTCEEECCGGGCEEEEECSSCEEECSCCCCHHHHHHHHHHHHTCSCEEECCSSSSCEE-SSS-CSSCEECC
T ss_pred HHHHHHHHHCCCEEEEeCCCCCCcccCCCcccceEEeccHHHHHHHHHHHhCCCEEEEecCCCeeeC-CCC-CCCCeECc
Confidence 3788899999999777754332 25789999999999999999999999999999 887 68899999
Q ss_pred cccHHHHhcC------CcCcc--hHHHHHHHHhCC-CcEEEEcCCCCchHHHHhcCCCcceEEecC
Q 028621 140 TLTYQEVTSK------DLSVM--DMTAITLCQENN-IPVVVFNLNQPGNIAKAIQGERVGTLIGGT 196 (206)
Q Consensus 140 ~i~~~e~~~~------g~~~~--k~~a~~~a~~~g-i~v~I~~g~~~~~l~~~l~g~~~GT~i~~~ 196 (206)
+++++|+.++ +.+.| |+++|..+.+.+ .+++|+|+ +.+.++|+|+ .||+|.++
T Consensus 256 ~it~~e~~~li~~g~~~~GGM~pKl~AA~~av~~gg~~v~I~s~---~~l~~~l~G~-~GT~I~~d 317 (317)
T 3kzf_A 256 EIKLSEILALEKDGHFAAGSMGPKVRAAIEFTQATGKMSIITSL---STAVDALNGK-CGTRIIKD 317 (317)
T ss_dssp EEEHHHHHHHHTTTSCC--CCHHHHHHHHHHHHHHCCCEEECCG---GGHHHHHTTS-SSEEEECC
T ss_pred CcCHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCCeEEEcch---HHHHHHHCCC-CCeEEecC
Confidence 9999887753 23444 999999887655 57999995 5678999998 89999874
No 43
>4axs_A Carbamate kinase; oxidoreductase; 2.50A {Mycoplasma penetrans}
Probab=99.90 E-value=1e-22 Score=174.31 Aligned_cols=117 Identities=22% Similarity=0.297 Sum_probs=95.2
Q ss_pred HHHHHHHhhCCCEEEEeCCC------------C-CCCCCcHHHHHHHHHhcCCcEEEEeeccCccccCCCCCCCCCcccc
Q 028621 73 RRRAVRHLEKGRVVIFAAGT------------G-NPFFTTDTAAALRCAEINAEVVLKATNVDGVYDDNPRRNPNARLLD 139 (206)
Q Consensus 73 ~~~l~~~l~~g~ipvi~g~~------------g-~~~~~sD~~A~~lA~~l~A~~li~ltdV~Gv~~~dP~~~~~a~~i~ 139 (206)
.+.+..++++|.|||++|.. | ..++++|.+|+.+|.+++||+|+|+|||||||+++|+ |++++|+
T Consensus 193 ~~~I~~L~~~g~Ivi~~ggggipv~~~~~~~~G~~~vid~D~~Aa~lA~~l~Ad~LiiLTdV~gv~~~~~~--~~~~~i~ 270 (332)
T 4axs_A 193 IDAIKQNVNNGCVCIVGGGGGIPTIIQDNQYIGVDGVIDKDFALAKIADAVNADIFVVLTAVDYVYVDFNK--PTQKALK 270 (332)
T ss_dssp HHHHHHHHHTTCEEECCGGGCEEEEESSSCEEECSSCCCHHHHHHHHHHHTTCSEEEEECSCSSCEESTTS--TTCEECS
T ss_pred HHHHHHhhcCCeEEEecccCCCCccccCCcccCceeeechHHHHHHHHHHhCCceEEEEecCCceEcCCCC--cchhhcc
Confidence 47788999999998876531 1 2369999999999999999999999999999998874 7789999
Q ss_pred cccHHHHhcC------CcCcc--hHHHHHHHHhCCC--cEEEEcCCCCchHHHHhcCCCcceEEec
Q 028621 140 TLTYQEVTSK------DLSVM--DMTAITLCQENNI--PVVVFNLNQPGNIAKAIQGERVGTLIGG 195 (206)
Q Consensus 140 ~i~~~e~~~~------g~~~~--k~~a~~~a~~~gi--~v~I~~g~~~~~l~~~l~g~~~GT~i~~ 195 (206)
+++.+|+.++ +.++| |++||..+.+.|. .++|.+ ++.+.+++.|+ .||+|..
T Consensus 271 ~it~~e~~~~~~~g~~~~GgM~pKv~Aa~~~v~~g~g~~~iI~~---~~~~~~~l~g~-~GT~IvA 332 (332)
T 4axs_A 271 TVDVKALNNFINQDQFAKGSMLPKIKAAMGFVNGHPNRSAIIAD---LSKVEDALKGL-SGTKIIA 332 (332)
T ss_dssp SCBHHHHHHHHHTTCSCTTTTHHHHHHHHHHHTTCTTCEEEEEC---STTHHHHTTTS-SSEEEBC
T ss_pred cCCHHHHHHHHHCCCcCcCCcHHHHHHHHHHHHhCCCcEEEECC---HHHHHHHHCCC-CCcEEeC
Confidence 9999988753 33444 9999999998876 355544 67789999997 7999963
No 44
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=78.47 E-value=6.7 Score=29.73 Aligned_cols=68 Identities=19% Similarity=0.074 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHhCCCCceEecccccccccch--hHHHHHHHHhhCCCEEEEeCCCCCCCCCcHHHHHHHHHhcCCc
Q 028621 39 VMNAIFLQATMESIGIPTRVQTAFRMSEVAEP--YIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAE 113 (206)
Q Consensus 39 ~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~~--~~~~~l~~~l~~g~ipvi~g~~g~~~~~sD~~A~~lA~~l~A~ 113 (206)
.-|...++.+|++.|+.+.... .+.+. .+.+.+++++++..+.|++|+ .+...-|.+...+|..++.+
T Consensus 22 DtN~~~l~~~L~~~G~~v~~~~-----iv~Dd~~~I~~~l~~a~~~~DlVittGG--~g~~~~D~T~ea~a~~~~~~ 91 (172)
T 3kbq_A 22 NTNAAFIGNFLTYHGYQVRRGF-----VVMDDLDEIGWAFRVALEVSDLVVSSGG--LGPTFDDMTVEGFAKCIGQD 91 (172)
T ss_dssp CHHHHHHHHHHHHTTCEEEEEE-----EECSCHHHHHHHHHHHHHHCSEEEEESC--CSSSTTCCHHHHHHHHHTCC
T ss_pred eHHHHHHHHHHHHCCCEEEEEE-----EeCCCHHHHHHHHHHHHhcCCEEEEcCC--CcCCcccchHHHHHHHcCCC
Confidence 3677788888999998765432 22332 245677777777778888875 45567888889999999865
No 45
>3ewi_A N-acylneuraminate cytidylyltransferase; beta barrel, HAD-like, rossmannoid fold, nucleotidyltransferase, nucleus; 1.90A {Mus musculus}
Probab=63.18 E-value=13 Score=27.65 Aligned_cols=58 Identities=16% Similarity=0.247 Sum_probs=33.9
Q ss_pred EEeeccCccccCCCCC-CCCCcccccccHHHHhcCCcCcchHHHHHHHHhCCCcEEEEcCCCCchHHHHhc
Q 028621 116 LKATNVDGVYDDNPRR-NPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQ 185 (206)
Q Consensus 116 i~ltdV~Gv~~~dP~~-~~~a~~i~~i~~~e~~~~g~~~~k~~a~~~a~~~gi~v~I~~g~~~~~l~~~l~ 185 (206)
.+++|+||++++.-.. .++.+.+..++.. +..+...+.+.|+++.|++++ .....++.
T Consensus 11 liv~D~DGtL~d~~~~~~~~g~~~~~f~~~----------D~~~L~~Lk~~Gi~~~I~Tg~--~~~~~~l~ 69 (168)
T 3ewi_A 11 LLVCNIDGCLTNGHIYVSGDQKEIISYDVK----------DAIGISLLKKSGIEVRLISER--ACSKQTLS 69 (168)
T ss_dssp EEEEECCCCCSCSCCBCCSSCCCEEEEEHH----------HHHHHHHHHHTTCEEEEECSS--CCCHHHHH
T ss_pred EEEEeCccceECCcEEEcCCCCEEEEEecC----------cHHHHHHHHHCCCEEEEEeCc--HHHHHHHH
Confidence 6789999999864211 1222333333332 334566677788888888777 34444454
No 46
>2fts_A Gephyrin; gephyrin, neuroreceptor anchoring, structu protein; 2.41A {Rattus norvegicus} SCOP: b.85.6.1 b.103.1.1 c.57.1.2 PDB: 2fu3_A 1t3e_A
Probab=60.94 E-value=37 Score=29.24 Aligned_cols=70 Identities=19% Similarity=0.166 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHhCCCCceEecccccccccch--hHHHHHHHHhhCCCEEEEeCCCCCCCCCcHHHHHHHHHhcCCcEEEE
Q 028621 40 MNAIFLQATMESIGIPTRVQTAFRMSEVAEP--YIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLK 117 (206)
Q Consensus 40 ~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~~--~~~~~l~~~l~~g~ipvi~g~~g~~~~~sD~~A~~lA~~l~A~~li~ 117 (206)
-|...+..+|++.|..+..+. .+.+. .+.+.++++++.-.+.|++|+ .....-|.+...++..++.+ +.|
T Consensus 208 sN~~~L~~~l~~~G~~v~~~~-----iv~Dd~~~i~~~l~~a~~~~DlVittGG--~s~g~~D~t~~al~~~lg~~-~~f 279 (419)
T 2fts_A 208 SNRSTLLATIQEHGYPTINLG-----IVGDNPDDLLNALNEGISRADVIITSGG--VSMGEKDYLKQVLDIDLHAQ-IHF 279 (419)
T ss_dssp CHHHHHHHHHHTTTCCEEEEE-----EECSSHHHHHHHHHHHHHHCSEEEEESC--CSSSCCHHHHHHHHTTTCCE-EEE
T ss_pred CchHHHHHHHHHCCCEEEEEe-----ecCCCHHHHHHHHHHHHhcCCEEEEcCC--CcCCCcccHHHHHHHHcCCc-eEE
Confidence 577788888999998876432 23332 245677777766778788874 56678899999998888874 444
No 47
>1mkz_A Molybdenum cofactor biosynthesis protein B; MAD, WEAK anomalous signal, molybdopterin synthesis, structural genomics, PSI; HET: MSE; 1.60A {Escherichia coli} SCOP: c.57.1.1 PDB: 1r2k_B
Probab=55.81 E-value=33 Score=25.51 Aligned_cols=66 Identities=17% Similarity=0.187 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHhCCCCceEecccccccccch--hHHHHHHHHhhC--CCEEEEeCCCCCCCCCcHHHHHHHHHhcC
Q 028621 39 VMNAIFLQATMESIGIPTRVQTAFRMSEVAEP--YIRRRAVRHLEK--GRVVIFAAGTGNPFFTTDTAAALRCAEIN 111 (206)
Q Consensus 39 ~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~~--~~~~~l~~~l~~--g~ipvi~g~~g~~~~~sD~~A~~lA~~l~ 111 (206)
.-|...+++.|++.|+.+.... .+.+. .+.+.+++++++ -.+.|++|+ .....-|.+...++..++
T Consensus 27 D~n~~~l~~~L~~~G~~v~~~~-----iv~Dd~~~i~~~l~~a~~~~~~DlVittGG--~g~~~~D~t~ea~~~~~~ 96 (172)
T 1mkz_A 27 DTSGHYLRDSAQEAGHHVVDKA-----IVKENRYAIRAQVSAWIASDDVQVVLITGG--TGLTEGDQAPEALLPLFD 96 (172)
T ss_dssp CHHHHHHHHHHHHTTCEEEEEE-----EECSCHHHHHHHHHHHHHSSSCCEEEEESC--CSSSTTCCHHHHHGGGCS
T ss_pred CccHHHHHHHHHHCCCeEeEEE-----EeCCCHHHHHHHHHHHHhcCCCCEEEeCCC--CCCCCCCCHHHHHHHHhc
Confidence 4677788888999998765422 23332 255777888874 567788875 344556777777776664
No 48
>1k1e_A Deoxy-D-mannose-octulosonate 8-phosphate phosphat; structural genomics, KDO 8-P phosphatase, structure function project, S2F; HET: MES; 1.67A {Haemophilus influenzae RD} SCOP: c.108.1.5 PDB: 1j8d_A*
Probab=55.75 E-value=13 Score=27.29 Aligned_cols=60 Identities=22% Similarity=0.335 Sum_probs=32.8
Q ss_pred EEeeccCccccCCCC-CCCCCcccccccHHHHhcCCcCcchHHHHHHHHhCCCcEEEEcCCCCchHHHHhc
Q 028621 116 LKATNVDGVYDDNPR-RNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQ 185 (206)
Q Consensus 116 i~ltdV~Gv~~~dP~-~~~~a~~i~~i~~~e~~~~g~~~~k~~a~~~a~~~gi~v~I~~g~~~~~l~~~l~ 185 (206)
.++.|.||.+.+... ..++.+.+..++.. ..++...+.+.|+++.|++++....+..++.
T Consensus 10 ~i~~DlDGTL~~~~~~~~~~~~~~~~~~~~----------~~~~l~~L~~~G~~~~i~Tg~~~~~~~~~~~ 70 (180)
T 1k1e_A 10 FVITDVDGVLTDGQLHYDANGEAIKSFHVR----------DGLGIKMLMDADIQVAVLSGRDSPILRRRIA 70 (180)
T ss_dssp EEEEECTTTTSCSEEEEETTEEEEEEEEHH----------HHHHHHHHHHTTCEEEEEESCCCHHHHHHHH
T ss_pred EEEEeCCCCcCCCCeeeccCcceeeeeccc----------hHHHHHHHHHCCCeEEEEeCCCcHHHHHHHH
Confidence 467899998864311 01112222233322 2245556667788888887776665555443
No 49
>2pjk_A 178AA long hypothetical molybdenum cofactor biosynthesis protein B; 3D-structure, structural genomics, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii} PDB: 3iwt_A*
Probab=53.79 E-value=38 Score=25.42 Aligned_cols=66 Identities=14% Similarity=0.049 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHhCCCCceEecccccccccc-h-hHHHHHHHHhhC--CCEEEEeCCCCCCCCCcHHHHHHHHHhcC
Q 028621 39 VMNAIFLQATMESIGIPTRVQTAFRMSEVAE-P-YIRRRAVRHLEK--GRVVIFAAGTGNPFFTTDTAAALRCAEIN 111 (206)
Q Consensus 39 ~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~-~-~~~~~l~~~l~~--g~ipvi~g~~g~~~~~sD~~A~~lA~~l~ 111 (206)
.-|...++++|++.|..+.... .+.+ + .+.+.+++++++ -.+.|++|+ .....-|.+...++..++
T Consensus 39 Dsn~~~L~~~l~~~G~~v~~~~-----iv~Dd~~~I~~al~~a~~~~~~DlVittGG--~s~g~~D~t~eal~~~~~ 108 (178)
T 2pjk_A 39 DESGDIIKQLLIENGHKIIGYS-----LVPDDKIKILKAFTDALSIDEVDVIISTGG--TGYSPTDITVETIRKLFD 108 (178)
T ss_dssp CHHHHHHHHHHHHTTCEEEEEE-----EECSCHHHHHHHHHHHHTCTTCCEEEEESC--CSSSTTCCHHHHHGGGCS
T ss_pred ehHHHHHHHHHHHCCCEEEEEE-----EeCCCHHHHHHHHHHHHhcCCCCEEEECCC--CCCCCCcchHHHHHHHhc
Confidence 5688888889999998765422 2333 2 245677788876 567788774 444567777777777664
No 50
>2p9j_A Hypothetical protein AQ2171; secsg, riken, PSI, structural GENO protein structure initiative, southeast collaboratory for S genomics; 2.40A {Aquifex aeolicus}
Probab=53.65 E-value=14 Score=26.31 Aligned_cols=60 Identities=18% Similarity=0.272 Sum_probs=29.7
Q ss_pred EEeeccCccccCCCCC-CCCCcccccccHHHHhcCCcCcchHHHHHHHHhCCCcEEEEcCCCCchHHHHhc
Q 028621 116 LKATNVDGVYDDNPRR-NPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQ 185 (206)
Q Consensus 116 i~ltdV~Gv~~~dP~~-~~~a~~i~~i~~~e~~~~g~~~~k~~a~~~a~~~gi~v~I~~g~~~~~l~~~l~ 185 (206)
.+++|.||.+...... .+..+.++.++.. ..++...+.+.|+++.|++++....+..++.
T Consensus 11 ~v~~DlDGTL~~~~~~~~~~~~~~~~~~~~----------~~~~l~~l~~~g~~~~i~T~~~~~~~~~~l~ 71 (162)
T 2p9j_A 11 LLIMDIDGVLTDGKLYYTEHGETIKVFNVL----------DGIGIKLLQKMGITLAVISGRDSAPLITRLK 71 (162)
T ss_dssp EEEECCTTTTSCSEEEEETTEEEEEEEEHH----------HHHHHHHHHTTTCEEEEEESCCCHHHHHHHH
T ss_pred EEEEecCcceECCceeecCCCceeeeeccc----------HHHHHHHHHHCCCEEEEEeCCCcHHHHHHHH
Confidence 4688999988643111 1111222222221 1244445555667766666665555544443
No 51
>1y5e_A Molybdenum cofactor biosynthesis protein B; structural genomics, protein structure initiative, PSI, MCSG, midwest center for structural genomics; 1.90A {Bacillus cereus} SCOP: c.57.1.1
Probab=53.34 E-value=34 Score=25.30 Aligned_cols=66 Identities=15% Similarity=0.151 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHhCCCCceEecccccccccch--hHHHHHHHHhh--CCCEEEEeCCCCCCCCCcHHHHHHHHHhcC
Q 028621 39 VMNAIFLQATMESIGIPTRVQTAFRMSEVAEP--YIRRRAVRHLE--KGRVVIFAAGTGNPFFTTDTAAALRCAEIN 111 (206)
Q Consensus 39 ~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~~--~~~~~l~~~l~--~g~ipvi~g~~g~~~~~sD~~A~~lA~~l~ 111 (206)
.-|...++++|++.|+.+... ..+.+. .+.+.++++++ .-.+.|++|+. ....-|.+...++..++
T Consensus 30 Dsn~~~l~~~L~~~G~~v~~~-----~iv~Dd~~~i~~~l~~~~~~~~~DlVittGG~--g~g~~D~t~ea~~~~~~ 99 (169)
T 1y5e_A 30 DKSGQLLHELLKEAGHKVTSY-----EIVKDDKESIQQAVLAGYHKEDVDVVLTNGGT--GITKRDVTIEAVSALLD 99 (169)
T ss_dssp CHHHHHHHHHHHHHTCEEEEE-----EEECSSHHHHHHHHHHHHTCTTCSEEEEECCC--SSSTTCCHHHHHHTTCS
T ss_pred cChHHHHHHHHHHCCCeEeEE-----EEeCCCHHHHHHHHHHHHhcCCCCEEEEcCCC--CCCCCCCcHHHHHHHcC
Confidence 467788888898888876532 223332 25677888887 56787888753 34456666666665543
No 52
>2is8_A Molybdopterin biosynthesis enzyme, MOAB; globular alpha/beta fold, structu genomics, NPPSFA; 1.64A {Thermus thermophilus} PDB: 3mch_A
Probab=50.54 E-value=34 Score=25.18 Aligned_cols=65 Identities=6% Similarity=0.075 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHhCCCCceEecccccccccch--hHHHHHHHHhh--CCCEEEEeCCCCCCCCCcHHHHHHHHHhcC
Q 028621 40 MNAIFLQATMESIGIPTRVQTAFRMSEVAEP--YIRRRAVRHLE--KGRVVIFAAGTGNPFFTTDTAAALRCAEIN 111 (206)
Q Consensus 40 ~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~~--~~~~~l~~~l~--~g~ipvi~g~~g~~~~~sD~~A~~lA~~l~ 111 (206)
-|...++++|++.|+.+... ..+.+. .+.+.++++++ .-.+.|++|+ .....-|.+...++..++
T Consensus 21 ~n~~~l~~~l~~~G~~v~~~-----~iv~Dd~~~i~~~l~~~~~~~~~DlVittGG--~g~g~~D~t~ea~~~~~~ 89 (164)
T 2is8_A 21 TTHLAIREVLAGGPFEVAAY-----ELVPDEPPMIKKVLRLWADREGLDLILTNGG--TGLAPRDRTPEATRELLD 89 (164)
T ss_dssp CHHHHHHHHHTTSSEEEEEE-----EEECSCHHHHHHHHHHHHHTSCCSEEEEESC--CSSSTTCCHHHHHHTTCS
T ss_pred chHHHHHHHHHHCCCeEeEE-----EEcCCCHHHHHHHHHHHHhcCCCCEEEEcCC--CCCCCCCChHHHHHHHhC
Confidence 46777788888888765432 223332 25677888887 5677788875 444567777777776653
No 53
>4gdv_A L-asparaginase; NTN enzyme, homodimer, hydrolase, L-asparagine; 1.75A {Homo sapiens} PDB: 4gdu_A 4gdt_A 4gdw_A
Probab=45.82 E-value=8.2 Score=32.13 Aligned_cols=26 Identities=23% Similarity=0.207 Sum_probs=15.0
Q ss_pred EEEEeeccCccccCCCCCCCCCcccc
Q 028621 114 VVLKATNVDGVYDDNPRRNPNARLLD 139 (206)
Q Consensus 114 ~li~ltdV~Gv~~~dP~~~~~a~~i~ 139 (206)
.+--.|+..|+..+-|-.+-|.-++.
T Consensus 181 ~iaaaTSTgG~~~K~~GRVGDspiiG 206 (310)
T 4gdv_A 181 NVAYATSTGGIVNKMVGRVGDSPCLG 206 (310)
T ss_dssp CEEEEEEECCSTTCCTTBCCSTTSBT
T ss_pred CEEEEECCCCcccCCCCCCCCcCcCC
Confidence 35556666677766665555544443
No 54
>1rkq_A Hypothetical protein YIDA; two domain structure with beta-alpha sandwich. stucture contains A magnesium ION., PSI, protein structure initiative; 1.40A {Escherichia coli} SCOP: c.108.1.10
Probab=44.15 E-value=30 Score=27.28 Aligned_cols=51 Identities=18% Similarity=0.171 Sum_probs=34.4
Q ss_pred EEeeccCccccCCCCCCCCCcccccccHHHHhcCCcCcchHHHHHHHHhCCCcEEEEcCCCCchHHHHhc
Q 028621 116 LKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQ 185 (206)
Q Consensus 116 i~ltdV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~g~~~~k~~a~~~a~~~gi~v~I~~g~~~~~l~~~l~ 185 (206)
++++|.||-+-.+. + +++.. -.++...+.+.|+.+.++.||.+..+..++.
T Consensus 7 li~~DlDGTLl~~~------~---~i~~~----------~~~aL~~l~~~Gi~vviaTGR~~~~~~~~~~ 57 (282)
T 1rkq_A 7 LIAIDMDGTLLLPD------H---TISPA----------VKNAIAAARARGVNVVLTTGRPYAGVHNYLK 57 (282)
T ss_dssp EEEECCCCCCSCTT------S---CCCHH----------HHHHHHHHHHTTCEEEEECSSCGGGTHHHHH
T ss_pred EEEEeCCCCCCCCC------C---cCCHH----------HHHHHHHHHHCCCEEEEEcCCCHHHHHHHHH
Confidence 57889999664321 1 23332 1345666778899999999999888776543
No 55
>3f9r_A Phosphomannomutase; trypanosome glycobiology structural genomics, isomerase, structural genomics consortium, SGC; 1.85A {Trypanosoma brucei} SCOP: c.108.1.0 PDB: 2i54_A* 2i55_A*
Probab=43.05 E-value=52 Score=25.57 Aligned_cols=51 Identities=14% Similarity=0.018 Sum_probs=35.7
Q ss_pred EEeeccCccccCCCCCCCCCcccccccHHHHhcCCcCcchHHHHHHHHhCCCcEEEEcCCCCchHHHHhc
Q 028621 116 LKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAIQ 185 (206)
Q Consensus 116 i~ltdV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~g~~~~k~~a~~~a~~~gi~v~I~~g~~~~~l~~~l~ 185 (206)
++++|.||-+.++. + +++.. -.++...+.+.|+++.|++||.+..+.+.|.
T Consensus 6 li~~DlDGTLl~~~------~---~i~~~----------~~~~l~~l~~~g~~~~iaTGR~~~~~~~~l~ 56 (246)
T 3f9r_A 6 LLLFDVDGTLTPPR------L---CQTDE----------MRALIKRARGAGFCVGTVGGSDFAKQVEQLG 56 (246)
T ss_dssp EEEECSBTTTBSTT------S---CCCHH----------HHHHHHHHHHTTCEEEEECSSCHHHHHHHHC
T ss_pred EEEEeCcCCcCCCC------C---ccCHH----------HHHHHHHHHHCCCEEEEECCCCHHHHHHHhh
Confidence 57889999665321 1 23321 2345667788899999999999988877665
No 56
>3pzy_A MOG; ssgcid, seattle structural genomics center for infectious DI biosynthetic protein; 1.80A {Mycobacterium avium subsp} PDB: 3oi9_A 2g4r_A
Probab=42.65 E-value=54 Score=24.19 Aligned_cols=66 Identities=11% Similarity=0.140 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHhCCCCceEecccccccc-cchhHHHHHHHHhh-CCCEEEEeCCCCCCCCCcHHHHHHHHHhcC
Q 028621 39 VMNAIFLQATMESIGIPTRVQTAFRMSEV-AEPYIRRRAVRHLE-KGRVVIFAAGTGNPFFTTDTAAALRCAEIN 111 (206)
Q Consensus 39 ~~~~~ll~~~l~~~gi~a~~l~~~~~~~v-~~~~~~~~l~~~l~-~g~ipvi~g~~g~~~~~sD~~A~~lA~~l~ 111 (206)
.-|...++++|++.|..+... ..+ ++..+.+.++++++ .-.+.|++|+ .....-|.+...++..++
T Consensus 26 Dsn~~~l~~~l~~~G~~v~~~-----~iv~Dd~~i~~al~~a~~~~~DlVittGG--~s~g~~D~t~eal~~~~~ 93 (164)
T 3pzy_A 26 DRCGPIITEWLAQQGFSSAQP-----EVVADGSPVGEALRKAIDDDVDVILTSGG--TGIAPTDSTPDQTVAVVD 93 (164)
T ss_dssp CCHHHHHHHHHHHTTCEECCC-----EEECSSHHHHHHHHHHHHTTCSEEEEESC--CSSSTTCCHHHHHHTTCS
T ss_pred eHHHHHHHHHHHHCCCEEEEE-----EEeCCHHHHHHHHHHHHhCCCCEEEECCC--CCCCCCccHHHHHHHHhc
Confidence 467888888899988765431 122 22224567777775 5678788874 455677777777777665
No 57
>3rfq_A Pterin-4-alpha-carbinolamine dehydratase MOAB2; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: B3P; 2.25A {Mycobacterium marinum} PDB: 3tcr_A
Probab=41.77 E-value=58 Score=24.66 Aligned_cols=67 Identities=10% Similarity=0.067 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHhCCCCceEecccccccccc-h-hHHHHHHHHh-hCCCEEEEeCCCCCCCCCcHHHHHHHHHhcC
Q 028621 38 TVMNAIFLQATMESIGIPTRVQTAFRMSEVAE-P-YIRRRAVRHL-EKGRVVIFAAGTGNPFFTTDTAAALRCAEIN 111 (206)
Q Consensus 38 ~~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~-~-~~~~~l~~~l-~~g~ipvi~g~~g~~~~~sD~~A~~lA~~l~ 111 (206)
..-|...++.+|++.|..+.... .+.+ + .+.+.+++++ +.-.+.|++|+ .....-|.+.-.++..++
T Consensus 47 ~Dsn~~~L~~~L~~~G~~v~~~~-----iv~Dd~~~I~~al~~a~~~~~DlVIttGG--ts~g~~D~t~eal~~l~~ 116 (185)
T 3rfq_A 47 EDHSGPLVTELLTEAGFVVDGVV-----AVEADEVDIRNALNTAVIGGVDLVVSVGG--TGVTPRDVTPESTREILD 116 (185)
T ss_dssp CCSHHHHHHHHHHHTTEEEEEEE-----EECSCHHHHHHHHHHHHHTTCSEEEEESC--CSSSTTCCHHHHHHTTCS
T ss_pred cCcHHHHHHHHHHHCCCEEEEEE-----EeCCCHHHHHHHHHHHHhCCCCEEEECCC--CCCCCcccHHHHHHHHhc
Confidence 35588888888888887655322 2222 2 2456677776 45567777774 444566666666666554
No 58
>1u02_A Trehalose-6-phosphate phosphatase related protein; structural genomics, PSI; 1.92A {Thermoplasma acidophilum} SCOP: c.108.1.15
Probab=39.06 E-value=34 Score=26.39 Aligned_cols=28 Identities=14% Similarity=0.197 Sum_probs=22.0
Q ss_pred HHHHHHHhCCCcEEEEcCCCCchHHHHhc
Q 028621 157 TAITLCQENNIPVVVFNLNQPGNIAKAIQ 185 (206)
Q Consensus 157 ~a~~~a~~~gi~v~I~~g~~~~~l~~~l~ 185 (206)
++...+.+.| ++.|++||.+..+.+++.
T Consensus 30 ~al~~l~~~g-~v~iaTGR~~~~~~~~~~ 57 (239)
T 1u02_A 30 SLISDLKERF-DTYIVTGRSPEEISRFLP 57 (239)
T ss_dssp HHHHHHHHHS-EEEEECSSCHHHHHHHSC
T ss_pred HHHHHHhcCC-CEEEEeCCCHHHHHHHhc
Confidence 4556667779 999999999888877664
No 59
>2b30_A Pvivax hypothetical protein; SGPP, structural genomics, PSI, protein structure initiative; 2.70A {Plasmodium vivax} SCOP: c.108.1.10
Probab=38.65 E-value=38 Score=27.21 Aligned_cols=51 Identities=18% Similarity=0.148 Sum_probs=33.0
Q ss_pred EEeeccCccccCCCCCCCCCcccccccHHHHhcCCcCcchHHHHHHHHhCCCcEEEEcCCCCchHHHHh
Q 028621 116 LKATNVDGVYDDNPRRNPNARLLDTLTYQEVTSKDLSVMDMTAITLCQENNIPVVVFNLNQPGNIAKAI 184 (206)
Q Consensus 116 i~ltdV~Gv~~~dP~~~~~a~~i~~i~~~e~~~~g~~~~k~~a~~~a~~~gi~v~I~~g~~~~~l~~~l 184 (206)
++++|.||-+-.+. + . .++.. -.++...+.+.|+++.|+.||.+..+..++
T Consensus 29 li~~DlDGTLl~~~----~-~---~is~~----------~~~al~~l~~~Gi~v~iaTGR~~~~~~~~~ 79 (301)
T 2b30_A 29 LLLIDFDGTLFVDK----D-I---KVPSE----------NIDAIKEAIEKGYMVSICTGRSKVGILSAF 79 (301)
T ss_dssp EEEEETBTTTBCCT----T-T---CSCHH----------HHHHHHHHHHHTCEEEEECSSCHHHHHHHH
T ss_pred EEEEECCCCCcCCC----C-C---ccCHH----------HHHHHHHHHHCCCEEEEEcCCCHHHHHHHh
Confidence 57899999665320 0 1 23321 134555667789999999999888776655
No 60
>1jlj_A Gephyrin; globular alpha/beta fold, structural protein; 1.60A {Homo sapiens} SCOP: c.57.1.1 PDB: 1ihc_A
Probab=36.71 E-value=1.2e+02 Score=22.73 Aligned_cols=65 Identities=14% Similarity=0.180 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHh---CCCCceEecccccccccch--hHHHHHHHHhh--CCCEEEEeCCCCCCCCCcHHHHHHHHHhc
Q 028621 39 VMNAIFLQATMES---IGIPTRVQTAFRMSEVAEP--YIRRRAVRHLE--KGRVVIFAAGTGNPFFTTDTAAALRCAEI 110 (206)
Q Consensus 39 ~~~~~ll~~~l~~---~gi~a~~l~~~~~~~v~~~--~~~~~l~~~l~--~g~ipvi~g~~g~~~~~sD~~A~~lA~~l 110 (206)
.-|...++.+|++ .|..+... ..+.+. .+.+.++++++ .-.+.|++|+ .....-|.+...++..+
T Consensus 33 D~n~~~L~~~L~~~~~~G~~v~~~-----~iv~Dd~~~I~~al~~a~~~~~~DlVIttGG--tg~g~~D~t~eal~~~~ 104 (189)
T 1jlj_A 33 DRSGINLKDLVQDPSLLGGTISAY-----KIVPDEIEEIKETLIDWCDEKELNLILTTGG--TGFAPRDVTPEATKEVI 104 (189)
T ss_dssp CHHHHHHHHHHHCTTTTCCEEEEE-----EEECSCHHHHHHHHHHHHHTSCCSEEEEESC--CSSSTTCCHHHHHHHHC
T ss_pred chHHHHHHHHHhchhcCCcEEEEE-----EEeCCCHHHHHHHHHHHhhcCCCCEEEEcCC--CCCCCcccHHHHHHHHh
Confidence 4688888888887 67665432 223332 25577777776 5567788875 44456677777777665
No 61
>1g8l_A Molybdopterin biosynthesis MOEA protein; molybdenum cofactor biosynthesis, metal binding protein; 1.95A {Escherichia coli} SCOP: b.85.6.1 b.103.1.1 c.57.1.2 PDB: 1fc5_A 1g8r_A 2nqu_A 2nro_A 2nqq_A 2nqk_A 2nqr_A 2nqm_A 2nqs_A 2nrp_A 2nqv_A 2nrs_A 2nqn_A
Probab=35.76 E-value=1.6e+02 Score=25.20 Aligned_cols=69 Identities=13% Similarity=0.093 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHhCCCCceEecccccccccch--hHHHHHHHHhhCCCEEEEeCCCCCCCCCcHHHHHHHHHhcCCcEEEE
Q 028621 40 MNAIFLQATMESIGIPTRVQTAFRMSEVAEP--YIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLK 117 (206)
Q Consensus 40 ~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~~--~~~~~l~~~l~~g~ipvi~g~~g~~~~~sD~~A~~lA~~l~A~~li~ 117 (206)
-|...+..+|++.|..+..+ ..+.+. .+.+.+++.++.-.+.|++|+ .....-|.+...++.. + .+.|
T Consensus 204 sn~~~L~~~l~~~G~~v~~~-----~iv~Dd~~~i~~al~~a~~~~DlvittGG--~s~g~~D~t~~al~~~-G--~i~f 273 (411)
T 1g8l_A 204 TNRLAVHLMLEQLGCEVINL-----GIIRDDPHALRAAFIEADSQADVVISSGG--VSVGEADYTKTILEEL-G--EIAF 273 (411)
T ss_dssp CHHHHHHHHHHHTTCEEEEE-----EEECSCHHHHHHHHHHHHHHCSEEEECSS--SCSSSCSHHHHHHHHH-S--EEEE
T ss_pred CchHHHHHHHHHCCCEEEEE-----EEeCCCHHHHHHHHHHHhhcCCEEEECCC--CCCCCcccHHHHHHhc-C--cEEE
Confidence 57778888899999876542 223332 245677777766677788774 4556788888888765 6 4655
Q ss_pred e
Q 028621 118 A 118 (206)
Q Consensus 118 l 118 (206)
+
T Consensus 274 ~ 274 (411)
T 1g8l_A 274 W 274 (411)
T ss_dssp E
T ss_pred E
Confidence 4
No 62
>1uz5_A MOEA protein, 402AA long hypothetical molybdopterin biosynthesis MOEA protein; MOEA molybdopterin, MOCF biosynthesis; 2.05A {Pyrococcus horikoshii} SCOP: b.85.6.1 b.103.1.1 c.57.1.2
Probab=34.40 E-value=1.2e+02 Score=25.81 Aligned_cols=69 Identities=16% Similarity=0.121 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHhCCCCceEecccccccccch--hHHHHHHHHhhCCCEEEEeCCCCCCCCCcHHHHHHHHHhcCCcEEEE
Q 028621 40 MNAIFLQATMESIGIPTRVQTAFRMSEVAEP--YIRRRAVRHLEKGRVVIFAAGTGNPFFTTDTAAALRCAEINAEVVLK 117 (206)
Q Consensus 40 ~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~~--~~~~~l~~~l~~g~ipvi~g~~g~~~~~sD~~A~~lA~~l~A~~li~ 117 (206)
-|..++..+|++.|..+..+ ..+.+. .+.+.+++.+++-.+.|++|+ .....-|.+...++.. + .+.|
T Consensus 207 sN~~~L~~~l~~~G~~v~~~-----~iv~Dd~~~i~~~l~~a~~~~DlVittGG--~s~g~~D~t~~al~~~-G--~~~f 276 (402)
T 1uz5_A 207 INGRALCDAINELGGEGIFM-----GVARDDKESLKALIEKAVNVGDVVVISGG--ASGGTKDLTASVIEEL-G--EVKV 276 (402)
T ss_dssp CHHHHHHHHHHHHTSEEEEE-----EEECSSHHHHHHHHHHHHHHCSEEEEECC--C-----CHHHHHHHHH-S--EEEE
T ss_pred chHHHHHHHHHhCCCeEEEE-----EEeCCCHHHHHHHHHHHhhCCCEEEEcCC--CCCCCcccHHHHHHhh-C--CEEE
Confidence 57778888898888776542 223332 245677777766678788874 4556778888888765 6 5666
Q ss_pred e
Q 028621 118 A 118 (206)
Q Consensus 118 l 118 (206)
+
T Consensus 277 ~ 277 (402)
T 1uz5_A 277 H 277 (402)
T ss_dssp E
T ss_pred e
Confidence 5
No 63
>2pbq_A Molybdenum cofactor biosynthesis MOG; molybdopterin, MPT, structural genomics, NPPSFA, national PR protein structural and functional analyses; 1.70A {Aquifex aeolicus} PDB: 2qq1_A 3mci_A 3mcj_A 3k6a_A* 2f7w_A 2f7y_A 2fuw_A
Probab=34.31 E-value=1.4e+02 Score=22.15 Aligned_cols=65 Identities=6% Similarity=0.046 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHH---hCCCCceEecccccccccch--hHHHHHHHHhh--CCCEEEEeCCCCCCCCCcHHHHHHHHHhcC
Q 028621 39 VMNAIFLQATME---SIGIPTRVQTAFRMSEVAEP--YIRRRAVRHLE--KGRVVIFAAGTGNPFFTTDTAAALRCAEIN 111 (206)
Q Consensus 39 ~~~~~ll~~~l~---~~gi~a~~l~~~~~~~v~~~--~~~~~l~~~l~--~g~ipvi~g~~g~~~~~sD~~A~~lA~~l~ 111 (206)
.-|...++.+|+ +.|+.+ .. ..+.+. .+.+.++++++ .-.+.|++|+ .....-|.+...++..++
T Consensus 24 Dsn~~~l~~~l~~l~~~G~~v-~~-----~iv~Dd~~~I~~~l~~~~~~~~~DlVittGG--~g~g~~D~t~ea~~~~~~ 95 (178)
T 2pbq_A 24 DISGKAIIDYLKDVIITPFEV-EY-----RVIPDERDLIEKTLIELADEKGCSLILTTGG--TGPAPRDVTPEATEAVCE 95 (178)
T ss_dssp CHHHHHHHHHHHHHBCSCCEE-EE-----EEECSCHHHHHHHHHHHHHTSCCSEEEEESC--CSSSTTCCHHHHHHHHCS
T ss_pred cchHHHHHHHHHHHHhCCCEE-EE-----EEcCCCHHHHHHHHHHHHhcCCCCEEEECCC--CCCCCCCchHHHHHHHhC
Confidence 357777777777 788765 32 123332 25677888886 5677788875 344556777777776653
No 64
>2r8e_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; YRBI, divalent metal, HAD superfamily, KDO 8-P, hydrolase; 1.40A {Escherichia coli O6} PDB: 2r8x_A 2r8y_A 2r8z_A 3hyc_A 3i6b_A*
Probab=32.65 E-value=50 Score=24.26 Aligned_cols=27 Identities=11% Similarity=0.148 Sum_probs=14.7
Q ss_pred HHHHHHhCCCcEEEEcCCCCchHHHHh
Q 028621 158 AITLCQENNIPVVVFNLNQPGNIAKAI 184 (206)
Q Consensus 158 a~~~a~~~gi~v~I~~g~~~~~l~~~l 184 (206)
+...+.+.|+++.|++++....+..++
T Consensus 61 ~l~~L~~~g~~v~ivT~~~~~~~~~~l 87 (188)
T 2r8e_A 61 GIRCALTSDIEVAIITGRKAKLVEDRC 87 (188)
T ss_dssp HHHHHHTTTCEEEEECSSCCHHHHHHH
T ss_pred HHHHHHHCCCeEEEEeCCChHHHHHHH
Confidence 344445566666666665555444443
No 65
>2g2c_A Putative molybdenum cofactor biosynthesis protein; structural genomics, PSI, protein structure initiative; 1.50A {Corynebacterium diphtheriae} SCOP: c.57.1.1
Probab=31.05 E-value=86 Score=22.95 Aligned_cols=64 Identities=16% Similarity=0.154 Sum_probs=36.9
Q ss_pred HHHHHHHHH----HHhCCCCceEecccccccccch--hHHHHHHHHhhC-CCEEEEeCCCCCCCCCcHHHHHHHHHhc
Q 028621 40 MNAIFLQAT----MESIGIPTRVQTAFRMSEVAEP--YIRRRAVRHLEK-GRVVIFAAGTGNPFFTTDTAAALRCAEI 110 (206)
Q Consensus 40 ~~~~ll~~~----l~~~gi~a~~l~~~~~~~v~~~--~~~~~l~~~l~~-g~ipvi~g~~g~~~~~sD~~A~~lA~~l 110 (206)
-|...++.+ |++.|+.+... ..+.+. .+.+.+++++++ -.+.|++|+ .....-|.+...++..+
T Consensus 25 ~n~~~l~~~~~~~l~~~G~~v~~~-----~iv~Dd~~~I~~~l~~a~~~~~DlVittGG--~g~~~~D~t~ea~~~~~ 95 (167)
T 2g2c_A 25 KALPLLQRLMSDELQDYSYELISE-----VVVPEGYDTVVEAIATALKQGARFIITAGG--TGIRAKNQTPEATASFI 95 (167)
T ss_dssp CHHHHHHHHHCC----CEEEEEEE-----EEECSSHHHHHHHHHHHHHTTCSEEEEESC--CSSSTTCCHHHHHHTTC
T ss_pred cHHHHHHHhHHhHHHHCCCEEeEE-----EEeCCCHHHHHHHHHHHHhCCCCEEEECCC--CCCCCCcChHHHHHHHh
Confidence 577777877 87777655432 223332 256778888874 577788875 33445566666666554
No 66
>1di6_A MOGA, molybdenum cofactor biosynthetic enzyme; MOCO, MOCO biosynthesis, gephyrin function; 1.45A {Escherichia coli} SCOP: c.57.1.1 PDB: 1di7_A
Probab=26.22 E-value=2e+02 Score=21.65 Aligned_cols=68 Identities=10% Similarity=0.019 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHhCCCCceEecccccccccch--hHHHHHHHHhh--CCCEEEEeCCCCCCCCCcHHHHHHHHHhcC
Q 028621 39 VMNAIFLQATMESIGIPTRVQTAFRMSEVAEP--YIRRRAVRHLE--KGRVVIFAAGTGNPFFTTDTAAALRCAEIN 111 (206)
Q Consensus 39 ~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~~--~~~~~l~~~l~--~g~ipvi~g~~g~~~~~sD~~A~~lA~~l~ 111 (206)
..|...++++|++.|...... ....+.+. .+.+.++++++ .-.+.|++|+ .....-|.+...++..++
T Consensus 22 D~n~~~L~~~L~~~G~~~~v~---~~~iV~Dd~~~I~~al~~a~~~~~~DlVitTGG--tg~g~~D~T~ea~~~~~~ 93 (195)
T 1di6_A 22 DKGIPALEEWLTSALTTPFEL---ETRLIPDEQAIIEQTLCELVDEMSCHLVLTTGG--TGPARRDVTPDATLAVAD 93 (195)
T ss_dssp CCHHHHHHHHHHHHBCSCEEE---EEEEEESCHHHHHHHHHHHHHTSCCSEEEEESC--CSSSTTCCHHHHHHHTCS
T ss_pred chHHHHHHHHHHHcCCCCceE---EEEEeCCCHHHHHHHHHHHHhcCCCCEEEECCC--CCCCCCccHHHHHHHHhc
Confidence 357778888898888773111 11223332 25577788887 4567788875 344456666666666653
No 67
>1uuy_A CNX1, molybdopterin biosynthesis CNX1; chelatase, molybdenum cofactor biosynthesis; HET: MTE AMP; 1.45A {Arabidopsis thaliana} SCOP: c.57.1.1 PDB: 1o8q_A 1o8n_A 1o8o_A 1uux_A* 1eav_A
Probab=24.86 E-value=2e+02 Score=20.84 Aligned_cols=64 Identities=13% Similarity=0.132 Sum_probs=38.2
Q ss_pred HHHHHHHHHHhC-----CCCceEecccccccccch--hHHHHHHHHhh--CCCEEEEeCCCCCCCCCcHHHHHHHHHhcC
Q 028621 41 NAIFLQATMESI-----GIPTRVQTAFRMSEVAEP--YIRRRAVRHLE--KGRVVIFAAGTGNPFFTTDTAAALRCAEIN 111 (206)
Q Consensus 41 ~~~ll~~~l~~~-----gi~a~~l~~~~~~~v~~~--~~~~~l~~~l~--~g~ipvi~g~~g~~~~~sD~~A~~lA~~l~ 111 (206)
|...+.+.|+++ |..+.. ...+.+. .+.+.++++++ .-.+.|++|+ .....-|.+...++..++
T Consensus 26 n~~~l~~~l~~~~~~~~G~~v~~-----~~iv~Dd~~~i~~~l~~~~~~~~~DlVittGG--~g~g~~D~t~~a~~~~~~ 98 (167)
T 1uuy_A 26 SGPRAVSVVDSSSEKLGGAKVVA-----TAVVPDEVERIKDILQKWSDVDEMDLILTLGG--TGFTPRDVTPEATKKVIE 98 (167)
T ss_dssp HHHHHHHHHHHTTTTTTSEEEEE-----EEEECSCHHHHHHHHHHHHHTSCCSEEEEESC--CSSSTTCCHHHHHHHHCS
T ss_pred cHHHHHHHHHhccccCCCcEEeE-----EEEcCCCHHHHHHHHHHHHhcCCCCEEEECCC--CCCCCCCchHHHHHHHhc
Confidence 444555556655 655433 2223332 25577777774 4567788774 445567888888887764
No 68
>3j21_Q PFEL19, 50S ribosomal protein L19E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=24.72 E-value=52 Score=24.26 Aligned_cols=47 Identities=17% Similarity=0.177 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHhCCCCceEecccccccccchhHHHHHHHHhhCCCEEE
Q 028621 40 MNAIFLQATMESIGIPTRVQTAFRMSEVAEPYIRRRAVRHLEKGRVVI 87 (206)
Q Consensus 40 ~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~~~~~~~l~~~l~~g~ipv 87 (206)
+..++.++.| ..|.+=++++|-+...+.+....+.|..+++.|.|..
T Consensus 6 ~QKRLAa~vL-~cGk~rVWlDP~e~~eIa~A~sR~~IRkLIkdG~I~~ 52 (150)
T 3j21_Q 6 MQRRIAAEIL-KCGENRIWIDPERIDDVASAITREDIKRLIKEGVIKK 52 (150)
T ss_dssp HHHHHHHHHH-TSCGGGEEECTTCHHHHHTCCSHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHH-cCCcceeecChHHHHHHHhcccHHHHHHHHHCCCeEe
Confidence 4566767766 4898889999886544433323578999999998844
No 69
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=24.24 E-value=2e+02 Score=20.98 Aligned_cols=65 Identities=15% Similarity=0.049 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHhCCCCceEecccccccccch--hHHHHHHHHhhC--CCEEEEeCCCCCCCCCcHHHHHHHHHhc
Q 028621 39 VMNAIFLQATMESIGIPTRVQTAFRMSEVAEP--YIRRRAVRHLEK--GRVVIFAAGTGNPFFTTDTAAALRCAEI 110 (206)
Q Consensus 39 ~~~~~ll~~~l~~~gi~a~~l~~~~~~~v~~~--~~~~~l~~~l~~--g~ipvi~g~~g~~~~~sD~~A~~lA~~l 110 (206)
.-|..+++++|++.|+++.... .+.+. .+.+.++..+.. -.+.|++|+. ....-|.+.-.++..+
T Consensus 39 D~ng~~L~~~L~~~G~~v~~~~-----iV~Dd~~~i~~al~~~~a~~~~DlVittGG~--g~~~~D~t~ea~~~~~ 107 (178)
T 3iwt_A 39 DESGDIIKQLLIENGHKIIGYS-----LVPDDKIKILKAFTDALSIDEVDVIISTGGT--GYSPTDITVETIRKLF 107 (178)
T ss_dssp CHHHHHHHHHHHHTTCEEEEEE-----EECSCHHHHHHHHHHHHTCTTCCEEEEESCC--SSSTTCCHHHHHGGGC
T ss_pred cchHHHHHHHHHHCCCEEEEEE-----EeCCCHHHHHHHHHHHHhcCCCCEEEecCCc--ccCCCCchHHHHHHhh
Confidence 4688888999999998876432 23332 234455555433 3577777753 3345555555555444
No 70
>3n07_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphat; structural genomics, phosphatase, PSI-2, protein structure initiative; HET: MSE; 1.76A {Vibrio cholerae}
Probab=23.15 E-value=1.7e+02 Score=21.68 Aligned_cols=28 Identities=4% Similarity=0.164 Sum_probs=17.1
Q ss_pred HHHHHHhCCCcEEEEcCCCCchHHHHhc
Q 028621 158 AITLCQENNIPVVVFNLNQPGNIAKAIQ 185 (206)
Q Consensus 158 a~~~a~~~gi~v~I~~g~~~~~l~~~l~ 185 (206)
+...+.+.|+++.|+++........++.
T Consensus 60 ~l~~L~~~G~~~~ivT~~~~~~~~~~l~ 87 (195)
T 3n07_A 60 GVKALMNAGIEIAIITGRRSQIVENRMK 87 (195)
T ss_dssp HHHHHHHTTCEEEEECSSCCHHHHHHHH
T ss_pred HHHHHHHCCCEEEEEECcCHHHHHHHHH
Confidence 4555566777777776665555555444
No 71
>2ksw_A Oryctin; kazal-type, protease inhibitor, hydrolase inhibitor; NMR {Oryctes rhinoceros}
Probab=22.36 E-value=22 Score=21.39 Aligned_cols=11 Identities=27% Similarity=0.619 Sum_probs=8.5
Q ss_pred eEEEEEcCChh
Q 028621 3 QVAIVVGGGNI 13 (206)
Q Consensus 3 ~~iiVhGGG~~ 13 (206)
.+++||||-..
T Consensus 27 givvvhggcal 37 (66)
T 2ksw_A 27 GIVVVHGGCAL 37 (66)
T ss_dssp CEEEECSHHHH
T ss_pred CEEEEecceee
Confidence 47899988765
No 72
>3n1u_A Hydrolase, HAD superfamily, subfamily III A; structural genomics, PSI-2; 1.80A {Legionella pneumophila} SCOP: c.108.1.0
Probab=21.04 E-value=2.5e+02 Score=20.47 Aligned_cols=27 Identities=15% Similarity=0.257 Sum_probs=15.3
Q ss_pred HHHHHHhCCCcEEEEcCCCCchHHHHh
Q 028621 158 AITLCQENNIPVVVFNLNQPGNIAKAI 184 (206)
Q Consensus 158 a~~~a~~~gi~v~I~~g~~~~~l~~~l 184 (206)
+...+.+.|+++.|+++.....+...+
T Consensus 54 ~l~~L~~~g~~~~ivTn~~~~~~~~~l 80 (191)
T 3n1u_A 54 GLKLLMAAGIQVAIITTAQNAVVDHRM 80 (191)
T ss_dssp HHHHHHHTTCEEEEECSCCSHHHHHHH
T ss_pred HHHHHHHCCCeEEEEeCcChHHHHHHH
Confidence 344555667776666665555444443
No 73
>3e8m_A Acylneuraminate cytidylyltransferase; 2-keto-3-deoxynononic acid 9-phosphate phosphohydrolase, nucleotidyltransferase; HET: PEG PG4 EDO PGE; 1.10A {Bacteroides thetaiotaomicron} PDB: 3e84_A 3e81_A*
Probab=20.69 E-value=1.6e+02 Score=20.54 Aligned_cols=28 Identities=14% Similarity=0.272 Sum_probs=15.9
Q ss_pred HHHHHHhCCCcEEEEcCCCCchHHHHhc
Q 028621 158 AITLCQENNIPVVVFNLNQPGNIAKAIQ 185 (206)
Q Consensus 158 a~~~a~~~gi~v~I~~g~~~~~l~~~l~ 185 (206)
+...+.+.|+++.|++++.......++.
T Consensus 39 ~l~~l~~~g~~~~i~T~~~~~~~~~~~~ 66 (164)
T 3e8m_A 39 GIFWAHNKGIPVGILTGEKTEIVRRRAE 66 (164)
T ss_dssp HHHHHHHTTCCEEEECSSCCHHHHHHHH
T ss_pred HHHHHHHCCCEEEEEeCCChHHHHHHHH
Confidence 4445556677766666665555444444
Done!