BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 028622
         (206 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3RGI|A Chain A, Trans-Acting Transferase From Disorazole Synthase
          Length = 286

 Score = 32.0 bits (71), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 25/54 (46%)

Query: 46 RVVFTIGTSLASIATAWIGYSIRHLHQSKVDQRLESIESTLKENYQVGHAEFKK 99
          R +F    +L + A   +GYSIR L Q   DQRL   + T    Y V    + K
Sbjct: 18 RALFDAFPALTARADGVLGYSIRALCQDDPDQRLSQTQFTQPALYVVNALSYLK 71


>pdb|3SBM|A Chain A, Trans-Acting Transferase From Disorazole Synthase In
          Complex With Acetate
          Length = 281

 Score = 32.0 bits (71), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 19/54 (35%), Positives = 25/54 (46%)

Query: 46 RVVFTIGTSLASIATAWIGYSIRHLHQSKVDQRLESIESTLKENYQVGHAEFKK 99
          R +F    +L + A   +GYSIR L Q   DQRL   + T    Y V    + K
Sbjct: 18 RALFDAFPALTARADGVLGYSIRALCQDDPDQRLSQTQFTQPALYVVNALSYLK 71


>pdb|2V57|A Chain A, Crystal Structure Of The Tetr-Like Transcriptional
           Regulator Lfrr From Mycobacterium Smegmatis In Complex
           With Proflavine
 pdb|2V57|B Chain B, Crystal Structure Of The Tetr-Like Transcriptional
           Regulator Lfrr From Mycobacterium Smegmatis In Complex
           With Proflavine
 pdb|2V57|C Chain C, Crystal Structure Of The Tetr-Like Transcriptional
           Regulator Lfrr From Mycobacterium Smegmatis In Complex
           With Proflavine
 pdb|2V57|D Chain D, Crystal Structure Of The Tetr-Like Transcriptional
           Regulator Lfrr From Mycobacterium Smegmatis In Complex
           With Proflavine
 pdb|2WGB|A Chain A, Crystal Structure Of The Tetr-Like Transcriptional
           Regulator Lfrr From Mycobacterium Smegmatis
 pdb|2WGB|B Chain B, Crystal Structure Of The Tetr-Like Transcriptional
           Regulator Lfrr From Mycobacterium Smegmatis
          Length = 190

 Score = 29.3 bits (64), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 13/30 (43%), Positives = 18/30 (60%)

Query: 28  WSAVQDTYFSTKDTFERHRVVFTIGTSLAS 57
           W+ +Q  Y + KD   RH++V  I TSL S
Sbjct: 153 WALMQAGYEAAKDGMPRHQIVDAIMTSLTS 182


>pdb|3K7A|M Chain M, Crystal Structure Of An Rna Polymerase Ii-Tfiib Complex
 pdb|4BBR|M Chain M, Structure Of Rna Polymerase Ii-tfiib Complex
 pdb|4BBS|M Chain M, Structure Of An Initially Transcribing Rna Polymerase Ii-
           Tfiib Complex
          Length = 345

 Score = 28.9 bits (63), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 4/56 (7%)

Query: 52  GTSLASIATAWIGYSIR----HLHQSKVDQRLESIESTLKENYQVGHAEFKKLVDP 103
           G S  +IA   I  +I      +  +KV Q L+  E T+K  Y++ +    KLVDP
Sbjct: 271 GKSPITIAVVSIYLNILLFQIPITAAKVGQTLQVTEGTIKSGYKILYEHRDKLVDP 326


>pdb|3F9I|A Chain A, Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein)
          Reductase Rickettsia Prowazekii
 pdb|3F9I|B Chain B, Crystal Structure Of 3-Ketoacyl-(Acyl-Carrier-Protein)
          Reductase Rickettsia Prowazekii
          Length = 249

 Score = 27.7 bits (60), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 19/49 (38%), Positives = 32/49 (65%), Gaps = 9/49 (18%)

Query: 53 TSLASIATAWIGYSI-RHLHQ--SKV------DQRLESIESTLKENYQV 92
          TSL + A++ IG +I R LH+  SKV      +++L+S+ + LK+NY +
Sbjct: 16 TSLITGASSGIGSAIARLLHKLGSKVIISGSNEEKLKSLGNALKDNYTI 64


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.130    0.378 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,645,962
Number of Sequences: 62578
Number of extensions: 139391
Number of successful extensions: 327
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 321
Number of HSP's gapped (non-prelim): 7
length of query: 206
length of database: 14,973,337
effective HSP length: 94
effective length of query: 112
effective length of database: 9,091,005
effective search space: 1018192560
effective search space used: 1018192560
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 49 (23.5 bits)