BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 028622
         (206 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|B9KA57|MTNA_THENN Methylthioribose-1-phosphate isomerase OS=Thermotoga neapolitana
           (strain ATCC 49049 / DSM 4359 / NS-E) GN=mtnA PE=3 SV=1
          Length = 343

 Score = 31.6 bits (70), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 46/95 (48%), Gaps = 9/95 (9%)

Query: 62  WIGYSIRHLHQSKVDQRLESIESTLKENYQVGHAEFKKLVDPGSSAATTMATAGTTLIIG 121
           W G S+R L Q K+    E +E   K + +V HA  K+++  G+ A       G T   G
Sbjct: 10  WTGNSLRLLDQRKLPFIEEYVEC--KTHEEVAHA-IKEMIVRGAPAI------GVTAAFG 60

Query: 122 YGLGWRGGRWYATRKFRREQMKLLGQIKPRRWQLL 156
           Y LG+R  R    +++ ++  ++L + +P    L 
Sbjct: 61  YVLGFREYRSGDLKEWMKQVKEVLSRTRPTAVNLF 95


>sp|Q9KFL5|UPPP1_BACHD Undecaprenyl-diphosphatase 1 OS=Bacillus halodurans (strain ATCC
           BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125)
           GN=uppP1 PE=3 SV=1
          Length = 274

 Score = 30.8 bits (68), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 12/61 (19%)

Query: 67  IRHLHQSKVDQRLESIESTLKENYQVGHAEFKKLVDPGSSAATTMATAGTTLIIGYGLGW 126
           IRHL+  K D      + TLK+   VG A+   L+ PG S       +G T++   GLGW
Sbjct: 140 IRHLNGRKQDG-----DITLKDALLVGLAQTAALI-PGIS------RSGATIVAAMGLGW 187

Query: 127 R 127
           R
Sbjct: 188 R 188


>sp|B2UYE4|TRUA_CLOBA tRNA pseudouridine synthase A OS=Clostridium botulinum (strain
           Alaska E43 / Type E3) GN=truA PE=3 SV=1
          Length = 244

 Score = 30.0 bits (66), Expect = 10.0,   Method: Compositional matrix adjust.
 Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 2/51 (3%)

Query: 63  IGYSIRHLHQSKVDQRLESIESTLKENYQVGHAEFKKLVDPGSSAATTMAT 113
           + +  ++LH  + +  +E ++   +  Y +G  +FK  + PGSSA TT+ T
Sbjct: 121 LAFGKQYLHHVRKELNVEDMKKACE--YFLGKHDFKAFMSPGSSAKTTVRT 169


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.319    0.130    0.388 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 70,936,101
Number of Sequences: 539616
Number of extensions: 2600021
Number of successful extensions: 6654
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 6654
Number of HSP's gapped (non-prelim): 8
length of query: 206
length of database: 191,569,459
effective HSP length: 112
effective length of query: 94
effective length of database: 131,132,467
effective search space: 12326451898
effective search space used: 12326451898
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.9 bits)