Query 028622
Match_columns 206
No_of_seqs 15 out of 17
Neff 2.0
Searched_HMMs 29240
Date Tue Mar 26 00:10:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028622.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/028622hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3swf_A CGMP-gated cation chann 61.1 4.3 0.00015 29.7 2.1 36 71-109 33-69 (74)
2 1bl1_A Parathyroid hormone rec 51.9 0.91 3.1E-05 28.8 -2.4 20 36-55 11-30 (31)
3 3pg6_A E3 ubiquitin-protein li 47.5 3.9 0.00013 33.6 -0.0 15 41-56 99-113 (159)
4 2zsh_B Della protein GAI; plan 35.1 25 0.00085 27.5 2.8 31 59-89 27-57 (110)
5 2f23_A Anti-cleavage anti-GREA 32.8 38 0.0013 25.8 3.5 34 63-96 46-79 (156)
6 3ukm_A Potassium channel subfa 32.0 98 0.0034 26.3 6.2 63 61-123 28-111 (280)
7 1c1d_A L-phenylalanine dehydro 29.3 25 0.00086 30.7 2.1 56 39-94 271-327 (355)
8 3um7_A Potassium channel subfa 28.7 42 0.0014 28.9 3.4 41 61-101 47-88 (309)
9 2qsd_A Uncharacterized conserv 26.8 16 0.00056 30.2 0.5 27 39-65 21-51 (187)
10 1hbw_A Regulatory protein GAL4 25.8 19 0.00064 25.5 0.6 29 71-101 4-32 (57)
11 1leh_A Leucine dehydrogenase; 25.8 32 0.0011 29.8 2.2 55 39-93 270-324 (364)
12 3oa8_A SOXA; cytochrome, sulfu 23.5 23 0.00078 29.6 0.8 43 60-102 214-257 (275)
13 2ecc_A Homeobox and leucine zi 22.4 57 0.0019 23.0 2.6 30 76-105 12-41 (76)
14 2da1_A Alpha-fetoprotein enhan 20.8 89 0.003 20.1 3.1 29 77-105 17-45 (70)
15 1nk2_P Homeobox protein VND; h 20.1 1.8E+02 0.0063 19.1 4.7 46 77-139 19-64 (77)
No 1
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=61.07 E-value=4.3 Score=29.73 Aligned_cols=36 Identities=36% Similarity=0.495 Sum_probs=23.0
Q ss_pred hHhhHHHHHHHHHHHhhhhcccchhhhhhhccCCC-chhh
Q 028622 71 HQSKVDQRLESIESTLKENYQVGHAEFKKLVDPGS-SAAT 109 (206)
Q Consensus 71 hq~kVd~RL~SIE~amk~~~~leh~Eikkiv~~~~-s~~a 109 (206)
-|.|+.||+..+|+-++. +..+++-++..++. +-|+
T Consensus 33 sQ~KLKqRit~LE~~~~~---~~~~~~s~~~~~~~e~~p~ 69 (74)
T 3swf_A 33 MQQKLKQRLTKVEKFLKP---LIDTEFSAIEGSGTESGPT 69 (74)
T ss_dssp HHHHHHHHHHHHHHHHHH---HHHHHHCCC----------
T ss_pred HHHHHHHHHHHHHHHhcc---cCCCchhhccCCccccCCC
Confidence 378999999999999987 56777777877775 5553
No 2
>1bl1_A Parathyroid hormone receptor; micelle structures, calciotropic hormones, structures; NMR {Homo sapiens} SCOP: j.15.1.1
Probab=51.85 E-value=0.91 Score=28.75 Aligned_cols=20 Identities=25% Similarity=0.642 Sum_probs=17.3
Q ss_pred hccHhhhhhceeEEEechhh
Q 028622 36 FSTKDTFERHRVVFTIGTSL 55 (206)
Q Consensus 36 ~STKdvFErHrVVFTvGTSi 55 (206)
-+.+++|||=-+++|||=||
T Consensus 11 ~~~~e~FeRL~~iYTVGYSi 30 (31)
T 1bl1_A 11 TREREVFDRLGMIYTVGYSV 30 (31)
T ss_dssp CCHHHHHHSSHHHHHHHHHC
T ss_pred cchHHHHhheeeEEEEeeee
Confidence 35789999999999999876
No 3
>3pg6_A E3 ubiquitin-protein ligase DTX3L; DNA-damage, metal-binding, nucleus, phosphorylation, chromatin regulator, UBL conjugation pathway, zinc-finger; HET: CIT; 1.70A {Homo sapiens}
Probab=47.50 E-value=3.9 Score=33.59 Aligned_cols=15 Identities=33% Similarity=0.811 Sum_probs=12.0
Q ss_pred hhhhceeEEEechhhH
Q 028622 41 TFERHRVVFTIGTSLA 56 (206)
Q Consensus 41 vFErHrVVFTvGTSiA 56 (206)
-|| .|++||||||+.
T Consensus 99 AF~-~rLiFTVG~S~T 113 (159)
T 3pg6_A 99 AFD-QKLIFTVGYSRV 113 (159)
T ss_dssp HHH-TTCSEEEEEETT
T ss_pred HHH-cCCEEEEecccc
Confidence 354 489999999975
No 4
>2zsh_B Della protein GAI; plant hormone receptor, gibberellin, gibberellin signaling pathway, hydrolase, nucleus, receptor, developmental protein; HET: GA3; 1.80A {Arabidopsis thaliana} PDB: 2zsi_B*
Probab=35.07 E-value=25 Score=27.54 Aligned_cols=31 Identities=29% Similarity=0.472 Sum_probs=22.6
Q ss_pred HHHhhhhhhhhhhHhhHHHHHHHHHHHhhhh
Q 028622 59 ATAWIGYSIRHLHQSKVDQRLESIESTLKEN 89 (206)
Q Consensus 59 ~tAWaGYslRhlhq~kVd~RL~SIE~amk~~ 89 (206)
+.|=.||-.|-=-=..|-||||.+|.+|-+.
T Consensus 27 lLA~lGYkVrsSDma~vAQkLEqLE~vmg~a 57 (110)
T 2zsh_B 27 LLAVLGYKVRSSEMADVAQKLEQLEVMMSNV 57 (110)
T ss_dssp HHHTTTCBCBGGGHHHHHHHHHHHHHHHTTC
T ss_pred HHHHcCccccchhHHHHHHHHHHHHHHHccc
Confidence 3466789665544444999999999999743
No 5
>2f23_A Anti-cleavage anti-GREA transcription factor GFH1; anti-GREA GFH1 thermus thermophilus; 1.60A {Thermus thermophilus} SCOP: a.2.1.1 d.26.1.2 PDB: 2eul_A 3aoh_X* 3aoi_X* 2etn_A
Probab=32.83 E-value=38 Score=25.85 Aligned_cols=34 Identities=15% Similarity=0.353 Sum_probs=28.8
Q ss_pred hhhhhhhhhHhhHHHHHHHHHHHhhhhcccchhh
Q 028622 63 IGYSIRHLHQSKVDQRLESIESTLKENYQVGHAE 96 (206)
Q Consensus 63 aGYslRhlhq~kVd~RL~SIE~amk~~~~leh~E 96 (206)
++|-.....|..+|.|+..||+-+.+-.-++.++
T Consensus 46 aey~aak~~q~~~e~ri~~L~~~L~~a~vi~~~~ 79 (156)
T 2f23_A 46 SGLEAAKQEKARIEARIDSLEDILSRAVILEEGS 79 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHEEECCTTC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhCcccCCCC
Confidence 4798899999999999999999998876666554
No 6
>3ukm_A Potassium channel subfamily K member 1; membrane protein, eukaryotic, two-pore DO potassium channel, K2P channel, membrane; HET: UND; 3.40A {Homo sapiens}
Probab=31.96 E-value=98 Score=26.34 Aligned_cols=63 Identities=17% Similarity=0.236 Sum_probs=39.8
Q ss_pred HhhhhhhhhhhHhhHHHHHHHHHHHhhhh-cccchhhhhhhcc------------------CCC-chhhHHhhhhhhh-h
Q 028622 61 AWIGYSIRHLHQSKVDQRLESIESTLKEN-YQVGHAEFKKLVD------------------PGS-SAATTMATAGTTL-I 119 (206)
Q Consensus 61 AWaGYslRhlhq~kVd~RL~SIE~amk~~-~~leh~Eikkiv~------------------~~~-s~~aC~ATagTtl-v 119 (206)
|..=..|-.-||.+..++++...+..-+| ..+.++|+++++. +.+ +++.++-=+.||+ -
T Consensus 28 A~vF~~LE~p~E~~~r~~~~~~~~~fl~~~~~~s~~~l~~~~~~~~~a~~~g~~~~~~~~~~~~w~~~~a~yf~~~t~tT 107 (280)
T 3ukm_A 28 AVVFSSVELPYEDLLRQELRKLKRRFLEEHECLSEQQLEQFLGRVLEASNYGVSVLSQASGNWNWDFTSALFFASTVLST 107 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHTTTCCCC------CCSSHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCccHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHhcCCccccCCCCCCCCChhcchhheeeeeec
Confidence 44445677778888777777776665444 5788888765432 223 7877766555554 3
Q ss_pred hhhc
Q 028622 120 IGYG 123 (206)
Q Consensus 120 iGY~ 123 (206)
||||
T Consensus 108 vGyG 111 (280)
T 3ukm_A 108 TGYG 111 (280)
T ss_dssp CCCC
T ss_pred cccC
Confidence 6765
No 7
>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*
Probab=29.34 E-value=25 Score=30.65 Aligned_cols=56 Identities=13% Similarity=0.200 Sum_probs=35.5
Q ss_pred HhhhhhceeEEEechhhHHHHHHhhh-hhhhhhhHhhHHHHHHHHHHHhhhhcccch
Q 028622 39 KDTFERHRVVFTIGTSLASIATAWIG-YSIRHLHQSKVDQRLESIESTLKENYQVGH 94 (206)
Q Consensus 39 KdvFErHrVVFTvGTSiASv~tAWaG-YslRhlhq~kVd~RL~SIE~amk~~~~leh 94 (206)
-+.|+...|++.-+-.+-+-+.+..+ +-..+.-...|++||+.|-+++++.+..-.
T Consensus 271 ~~~L~~~gIlv~Pd~~aNaGGV~~s~~~E~~~w~~e~v~~~l~~i~~~~~~i~~~~~ 327 (355)
T 1c1d_A 271 SDILHARGILYAPDFVANAGGAIHLVGREVLGWSESVVHERAVAIGDTLNQVFEISD 327 (355)
T ss_dssp HHHHHHTTCEECCHHHHTTHHHHHHHHHHTTCCCHHHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHhCCEEEECCeEEcCCCeeeeeeehhcCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37889999999877554333333222 222334467899999999776666655443
No 8
>3um7_A Potassium channel subfamily K member 4; potassium ION channel, metal transport; 3.31A {Homo sapiens}
Probab=28.70 E-value=42 Score=28.93 Aligned_cols=41 Identities=17% Similarity=0.297 Sum_probs=28.1
Q ss_pred HhhhhhhhhhhHhhHHHHHHHHHHH-hhhhcccchhhhhhhc
Q 028622 61 AWIGYSIRHLHQSKVDQRLESIEST-LKENYQVGHAEFKKLV 101 (206)
Q Consensus 61 AWaGYslRhlhq~kVd~RL~SIE~a-mk~~~~leh~Eikkiv 101 (206)
|..=+.|-.-|+.+..++|+...+. ++++..+.++|+.+++
T Consensus 47 A~vF~~LE~~~E~~~~~~l~~~~~~fl~~~~~~~~~~l~~l~ 88 (309)
T 3um7_A 47 ALVFRALEQPHEQQAQRELGEVREKFLRAHPCVSDQELGLLI 88 (309)
T ss_dssp HHHHHHHHTTTCCCHHHHHHHHHGGGTSSCCCSCSHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHHhcccccHHHHHHHH
Confidence 4455566777888888888777665 5555568888876544
No 9
>2qsd_A Uncharacterized conserved protein; structural genomics, PSI-2, protein structure initiative; 2.50A {Idiomarina loihiensis}
Probab=26.77 E-value=16 Score=30.21 Aligned_cols=27 Identities=26% Similarity=0.613 Sum_probs=21.9
Q ss_pred HhhhhhceeEEEechhhHHH----HHHhhhh
Q 028622 39 KDTFERHRVVFTIGTSLASI----ATAWIGY 65 (206)
Q Consensus 39 KdvFErHrVVFTvGTSiASv----~tAWaGY 65 (206)
+..-|.|.|.|-||.|+..+ -.+|.|=
T Consensus 21 ~~~iElHDv~fvVA~s~eea~~~lk~~W~g~ 51 (187)
T 2qsd_A 21 GANIELHDIRFVVGPSMEETYPAIRKGWFGT 51 (187)
T ss_dssp TCSSCEEEEEEEEESSSGGGHHHHHHHCCSC
T ss_pred CCCceeeeeEEEEECCHHHHHHHHHHhcccc
Confidence 34569999999999999987 6777653
No 10
>1hbw_A Regulatory protein GAL4; transcriptional activator, galactose and melibiose metabolism, dimerization domain, coiled-coil dimeric; NMR {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=25.85 E-value=19 Score=25.46 Aligned_cols=29 Identities=21% Similarity=0.433 Sum_probs=20.0
Q ss_pred hHhhHHHHHHHHHHHhhhhcccchhhhhhhc
Q 028622 71 HQSKVDQRLESIESTLKENYQVGHAEFKKLV 101 (206)
Q Consensus 71 hq~kVd~RL~SIE~amk~~~~leh~Eikkiv 101 (206)
|=++||+||..+|+-+..-+ +.+.+.+|+
T Consensus 4 HLTeVEnRl~qLE~ll~~lf--P~~d~D~ll 32 (57)
T 1hbw_A 4 HLTEVESRLERLEQLFLLIF--PREDLDMIL 32 (57)
T ss_dssp CCHHHHHHHHHHHHHCSSSS--SSSCCCHHH
T ss_pred hHHHHHHHHHHHHHHHHHHC--CcccHHHHH
Confidence 56899999999999865433 334444444
No 11
>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1
Probab=25.80 E-value=32 Score=29.78 Aligned_cols=55 Identities=5% Similarity=0.179 Sum_probs=35.9
Q ss_pred HhhhhhceeEEEechhhHHHHHHhhhhhhhhhhHhhHHHHHHHHHHHhhhhcccc
Q 028622 39 KDTFERHRVVFTIGTSLASIATAWIGYSIRHLHQSKVDQRLESIESTLKENYQVG 93 (206)
Q Consensus 39 KdvFErHrVVFTvGTSiASv~tAWaGYslRhlhq~kVd~RL~SIE~amk~~~~le 93 (206)
-+.|+...|+|.-+-.+-+-+.+..++-....-...|++||+.|-+++++.+..-
T Consensus 270 ~~~L~~~Gi~~~Pd~~~NaGGv~~s~~E~~~~~~e~v~~~l~~i~~~~~~i~~~~ 324 (364)
T 1leh_A 270 GKYLHELGIVYAPDYVINAGGVINVADELYGYNRTRAMKRVDGIYDSIEKIFAIS 324 (364)
T ss_dssp HHHHHHHTCEECCHHHHTTHHHHHHHHGGGCCCHHHHHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHhCCCEEecceeecCCceEEEEEeecCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 4688888999887765444343433333334456789999999976666655443
No 12
>3oa8_A SOXA; cytochrome, sulfur oxidation pathway, heme-binding protein-H binding protein complex; HET: CSS HEC; 1.77A {Starkeya novella} PDB: 3ocd_A*
Probab=23.52 E-value=23 Score=29.64 Aligned_cols=43 Identities=9% Similarity=0.174 Sum_probs=36.7
Q ss_pred HHhhhhhhhhhhHhhHHHHHHHHHHHhhh-hcccchhhhhhhcc
Q 028622 60 TAWIGYSIRHLHQSKVDQRLESIESTLKE-NYQVGHAEFKKLVD 102 (206)
Q Consensus 60 tAWaGYslRhlhq~kVd~RL~SIE~amk~-~~~leh~Eikkiv~ 102 (206)
..|..|..++++.-+..+|++..-..|.. -..+..+||++|..
T Consensus 214 gq~p~Y~~~q~~~~~~~~R~~~c~~~M~~~a~~l~~~ei~ALa~ 257 (275)
T 3oa8_A 214 ATWPTYRVSQSALRTMQHRMWDCYRQMRMPAPDYASEAVTALTL 257 (275)
T ss_dssp TTCSEEEGGGTEEECHHHHHHHHHHHTTCCCCCTTCHHHHHHHH
T ss_pred ccCHHHHHHHhhhhhhhhcccchhhhhccCCCCCChHHHHHHHH
Confidence 57999999999999999999988777764 46889999998864
No 13
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=22.41 E-value=57 Score=23.04 Aligned_cols=30 Identities=13% Similarity=0.193 Sum_probs=24.3
Q ss_pred HHHHHHHHHHhhhhcccchhhhhhhccCCC
Q 028622 76 DQRLESIESTLKENYQVGHAEFKKLVDPGS 105 (206)
Q Consensus 76 d~RL~SIE~amk~~~~leh~Eikkiv~~~~ 105 (206)
.+-|+.+|++...|.-+..+|...|...-|
T Consensus 12 ~~Ql~~Le~~F~~~~YPs~~er~~LA~~tg 41 (76)
T 2ecc_A 12 KEQLAILKSFFLQCQWARREDYQKLEQITG 41 (76)
T ss_dssp HHHHHHHHHHHHHCSSCCHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHC
Confidence 355788999999999999999888877555
No 14
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=20.79 E-value=89 Score=20.15 Aligned_cols=29 Identities=14% Similarity=0.273 Sum_probs=22.0
Q ss_pred HHHHHHHHHhhhhcccchhhhhhhccCCC
Q 028622 77 QRLESIESTLKENYQVGHAEFKKLVDPGS 105 (206)
Q Consensus 77 ~RL~SIE~amk~~~~leh~Eikkiv~~~~ 105 (206)
+-|+.+|..-..|.....+|...|...-+
T Consensus 17 ~q~~~Le~~F~~~~yp~~~~r~~LA~~l~ 45 (70)
T 2da1_A 17 DQLRVLRQYFDINNSPSEEQIKEMADKSG 45 (70)
T ss_dssp HHHHHHHHHHHHCSSCCTTHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHHHhC
Confidence 45777888888888888888887766444
No 15
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=20.14 E-value=1.8e+02 Score=19.14 Aligned_cols=46 Identities=11% Similarity=0.281 Sum_probs=32.3
Q ss_pred HHHHHHHHHhhhhcccchhhhhhhccCCCchhhHHhhhhhhhhhhhccccccchhhhhhHHHH
Q 028622 77 QRLESIESTLKENYQVGHAEFKKLVDPGSSAATTMATAGTTLIIGYGLGWRGGRWYATRKFRR 139 (206)
Q Consensus 77 ~RL~SIE~amk~~~~leh~Eikkiv~~~~s~~aC~ATagTtlviGY~LGwRGG~wya~rkfrr 139 (206)
..|+.+|.....+..+..+|...|...-+-...-| -.||-||+-+-
T Consensus 19 ~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV-----------------~~WFqNRR~k~ 64 (77)
T 1nk2_P 19 AQTYELERRFRQQRYLSAPEREHLASLIRLTPTQV-----------------KIWFQNHRYKT 64 (77)
T ss_dssp HHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHH-----------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCHHHH-----------------HHHhHHhhcch
Confidence 45778889988888888888888766555222222 25999987553
Done!