Query 028622
Match_columns 206
No_of_seqs 15 out of 17
Neff 2.0
Searched_HMMs 13730
Date Tue Mar 26 00:11:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/028622.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/028622hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1js3a_ c.67.1.6 (A:) DOPA dec 41.5 6.7 0.00049 32.4 2.6 72 47-119 142-248 (476)
2 d1vkna1 c.2.1.3 (A:1-144,A:308 29.3 7.6 0.00055 28.7 0.8 89 35-124 57-163 (176)
3 d1hw6a_ c.1.7.1 (A:) 2,5-diket 28.0 9.6 0.0007 27.9 1.3 44 52-100 210-257 (262)
4 d1e0ea_ a.4.10.1 (A:) N-termin 25.3 10 0.00073 23.7 0.8 18 85-102 21-38 (46)
5 d1kr7a_ a.1.1.4 (A:) Nerve tis 24.9 12 0.00091 24.8 1.3 18 26-45 2-19 (110)
6 d2ecca1 a.4.1.1 (A:1-76) Homeo 24.6 25 0.0018 22.5 2.7 46 76-138 12-57 (76)
7 d1fkma1 a.69.2.1 (A:249-442) Y 24.0 72 0.0052 22.3 5.5 59 76-137 4-62 (194)
8 d1k6ya1 a.4.10.1 (A:1-46) N-te 22.1 12 0.00087 23.3 0.6 19 84-102 20-38 (46)
9 d1h1oa2 a.3.1.4 (A:94-183) Cyt 21.9 9.5 0.00069 25.3 0.2 43 57-102 42-85 (90)
10 d2ecba1 a.4.1.1 (A:8-83) Zinc 21.5 36 0.0026 21.7 3.1 48 76-140 13-60 (76)
11 d2g17a1 c.2.1.3 (A:1-153,A:309 21.1 10 0.00074 26.9 0.2 29 88-116 131-160 (179)
12 d1a0pa2 d.163.1.1 (A:111-292) 20.2 19 0.0014 23.6 1.4 43 91-134 2-45 (182)
No 1
>d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]}
Probab=41.50 E-value=6.7 Score=32.40 Aligned_cols=72 Identities=17% Similarity=0.180 Sum_probs=46.5
Q ss_pred eEEEechhhHHHHHHhhhhhhhhhhH----------hhHHHHH---------HHHHHHhh------------hhcccchh
Q 028622 47 VVFTIGTSLASIATAWIGYSIRHLHQ----------SKVDQRL---------ESIESTLK------------ENYQVGHA 95 (206)
Q Consensus 47 VVFTvGTSiASv~tAWaGYslRhlhq----------~kVd~RL---------~SIE~amk------------~~~~leh~ 95 (206)
-|||-|.|.|-....|+.=. +.++. ...-.|+ -||++|+. +++.+..+
T Consensus 142 G~~~~Ggs~anl~al~~AR~-~~~~~~~~~~~g~~~~~~~~~~vv~~s~~~H~Si~ka~~~lGl~~~~v~~d~~~~md~~ 220 (476)
T d1js3a_ 142 GVIQGSASEATLVALLAART-KVVRRLQAASPGLTQGAVLEKLVAYASDQAHSSVERAGLIGGVKLKAIPSDGKFAMRAS 220 (476)
T ss_dssp EEEESCHHHHHHHHHHHHHH-HHHHHHHHHSTTCCHHHHHHHEEEEEETTCCHHHHHHHHHHTCEEEEECCCTTSCCCHH
T ss_pred ceECCcHHHHHHHHHHHHHH-HHHHhhcccccCcccccccCceEEEecccccHHHHHHHHhcCceEEEeccCCCCCcCHH
Confidence 57999999998888887521 11111 1111222 38999975 56777788
Q ss_pred hhhhhccCC---C-chhhHHhhhhhhhh
Q 028622 96 EFKKLVDPG---S-SAATTMATAGTTLI 119 (206)
Q Consensus 96 Eikkiv~~~---~-s~~aC~ATagTtlv 119 (206)
++++.++.. + ..-..+||||||..
T Consensus 221 ~L~~~i~~~~~~g~~p~~VvataGtt~~ 248 (476)
T d1js3a_ 221 ALQEALERDKAAGLIPFFVVATLGTTSC 248 (476)
T ss_dssp HHHHHHHHHHHTTCEEEEEEEEBSCTTT
T ss_pred HHHHHHHHHHhcCCCcEEEeecCCCccc
Confidence 887777542 2 34457899999873
No 2
>d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]}
Probab=29.25 E-value=7.6 Score=28.73 Aligned_cols=89 Identities=19% Similarity=0.185 Sum_probs=41.6
Q ss_pred hhccHhhhhhceeEEEechhhHHHHHHhhhhhhhhhhHhhHHHHHHHHH-------------HHhhhhcccch---hhhh
Q 028622 35 YFSTKDTFERHRVVFTIGTSLASIATAWIGYSIRHLHQSKVDQRLESIE-------------STLKENYQVGH---AEFK 98 (206)
Q Consensus 35 f~STKdvFErHrVVFTvGTSiASv~tAWaGYslRhlhq~kVd~RL~SIE-------------~amk~~~~leh---~Eik 98 (206)
+++..+.++.-.|||.-.-+-.|.-.+=..--. .+=+---|=||+.-+ .-++..|+|+| ++|+
T Consensus 57 ~~~~~~~~~~~dvvf~a~p~~~s~~~~~~~~~~-~VIDlSadfRl~~~~~y~~~Y~~~h~~~~~~~~~YGlpE~~r~~i~ 135 (176)
T d1vkna1 57 EFDPEKVSKNCDVLFTALPAGASYDLVRELKGV-KIIDLGADFRFDDPGVYREWYGKELSGYENIKRVYGLPELHREEIK 135 (176)
T ss_dssp CCCHHHHHHHCSEEEECCSTTHHHHHHTTCCSC-EEEESSSTTTCSSHHHHHHHHCCCCTTGGGCCEEECCHHHHHHHHT
T ss_pred ccCHhHhccccceEEEccccHHHHHHHHhhccc-eEEecCccccccchhhHHHhhccccccccccceeecCcHHhHHHHh
Confidence 456666777888998765444443222110000 011111144554321 11344555552 5565
Q ss_pred h--hccCCCchhhHHhhhhhhhhhhhcc
Q 028622 99 K--LVDPGSSAATTMATAGTTLIIGYGL 124 (206)
Q Consensus 99 k--iv~~~~s~~aC~ATagTtlviGY~L 124 (206)
+ ||...|++|+|+.-|..-|..-++|
T Consensus 136 ~~~~IanPgC~~t~~~laL~PL~~~~gi 163 (176)
T d1vkna1 136 NAQVVGNPGLVKGASGQAVQNMNIMFGL 163 (176)
T ss_dssp TCSEEECCCTTTTTHHHHHHHHHHHTTC
T ss_pred cCCEEEccCcHHHHHHHHHhhHHHhcCC
Confidence 4 4544455555555555555454443
No 3
>d1hw6a_ c.1.7.1 (A:) 2,5-diketo-D-gluconic acid reductase A {Corynebacterium sp. [TaxId: 1720]}
Probab=28.04 E-value=9.6 Score=27.95 Aligned_cols=44 Identities=20% Similarity=0.339 Sum_probs=25.5
Q ss_pred chhhHHHHHHhhhhhhhhhhHhhH---HHHHHHHHHHhhh-hcccchhhhhhh
Q 028622 52 GTSLASIATAWIGYSIRHLHQSKV---DQRLESIESTLKE-NYQVGHAEFKKL 100 (206)
Q Consensus 52 GTSiASv~tAWaGYslRhlhq~kV---d~RL~SIE~amk~-~~~leh~Eikki 100 (206)
|.|+|.++.+|+- .| ---| -...+.||+.++. +..|+.+|+++|
T Consensus 210 g~t~aq~al~~~l---~~--~~vvi~G~~~~~~l~en~~a~~~~L~~e~~~~l 257 (262)
T d1hw6a_ 210 GKTPAQAVLRWHL---QK--GFVVFPKSVRRERLEENLDVFDFDLTDTEIAAI 257 (262)
T ss_dssp TCCHHHHHHHHHH---HT--TCBBCCCCCSHHHHHHHHCCSSCCCCHHHHHHH
T ss_pred CCCHHHHHHHHHH---hC--CCEEEECCCCHHHHHHHHHhCCCCCCHHHHHHH
Confidence 5689999999962 21 1001 0122334444433 467999999887
No 4
>d1e0ea_ a.4.10.1 (A:) N-terminal Zn binding domain of HIV integrase {Human immunodeficiency virus type 2 [TaxId: 11709]}
Probab=25.32 E-value=10 Score=23.67 Aligned_cols=18 Identities=11% Similarity=0.357 Sum_probs=15.7
Q ss_pred Hhhhhcccchhhhhhhcc
Q 028622 85 TLKENYQVGHAEFKKLVD 102 (206)
Q Consensus 85 amk~~~~leh~Eikkiv~ 102 (206)
+|...++|+...-+.||.
T Consensus 21 ~L~~~F~lp~~vAr~IV~ 38 (46)
T d1e0ea_ 21 ELSHKFGIPNLVARQIVN 38 (46)
T ss_dssp HHHHHTCCCHHHHHHHHH
T ss_pred HHHHHcCCCHHHHHHHHH
Confidence 488899999999999986
No 5
>d1kr7a_ a.1.1.4 (A:) Nerve tissue mini-hemoglobin (neural globin) {Milky ribbon-worm (Cerebratulus lacteus) [TaxId: 6221]}
Probab=24.85 E-value=12 Score=24.83 Aligned_cols=18 Identities=33% Similarity=0.896 Sum_probs=13.3
Q ss_pred hhhhhhhhhhhccHhhhhhc
Q 028622 26 NSWSAVQDTYFSTKDTFERH 45 (206)
Q Consensus 26 nsw~AvqDTf~STKdvFErH 45 (206)
-||++|.|.||- .+|++|
T Consensus 2 ~swa~v~~~ff~--~LF~~~ 19 (110)
T d1kr7a_ 2 VNWAAVVDDFYQ--ELFKAH 19 (110)
T ss_dssp CCHHHHHHHHHH--HHHHHC
T ss_pred CCHHHHHHHHHH--HHHHHC
Confidence 489999999983 455555
No 6
>d2ecca1 a.4.1.1 (A:1-76) Homeobox-leucine zipper protein Homez {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.63 E-value=25 Score=22.47 Aligned_cols=46 Identities=11% Similarity=0.299 Sum_probs=34.9
Q ss_pred HHHHHHHHHHhhhhcccchhhhhhhccCCCchhhHHhhhhhhhhhhhccccccchhhhhhHHH
Q 028622 76 DQRLESIESTLKENYQVGHAEFKKLVDPGSSAATTMATAGTTLIIGYGLGWRGGRWYATRKFR 138 (206)
Q Consensus 76 d~RL~SIE~amk~~~~leh~Eikkiv~~~~s~~aC~ATagTtlviGY~LGwRGG~wya~rkfr 138 (206)
++-++-+|.....|.....+|+..|...-+-.+..| -.||.|++-+
T Consensus 12 ~eQ~~~Le~~F~~n~~Ps~~~~~~La~~~gL~~~qV-----------------~~WF~NrR~k 57 (76)
T d2ecca1 12 KEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEI-----------------IQWFGDTRYA 57 (76)
T ss_dssp HHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHH-----------------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHccCHHHH-----------------HHHHHHHHHH
Confidence 566788999999999999999999988666323332 2599998753
No 7
>d1fkma1 a.69.2.1 (A:249-442) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=24.00 E-value=72 Score=22.27 Aligned_cols=59 Identities=19% Similarity=0.226 Sum_probs=38.7
Q ss_pred HHHHHHHHHHhhhhcccchhhhhhhccCCCchhhHHhhhhhhhhhhhccccccchhhhhhHH
Q 028622 76 DQRLESIESTLKENYQVGHAEFKKLVDPGSSAATTMATAGTTLIIGYGLGWRGGRWYATRKF 137 (206)
Q Consensus 76 d~RL~SIE~amk~~~~leh~Eikkiv~~~~s~~aC~ATagTtlviGY~LGwRGG~wya~rkf 137 (206)
-||+++.++-|++..-+..+|+++++..|- |..+=...=.+++|| +.+..-.|+..-.-
T Consensus 4 ~~~i~~~~~~l~~~~~i~~~~lr~l~~~Gi--p~~lR~~vW~~llg~-~~~~~~~~~~~~~~ 62 (194)
T d1fkma1 4 IQRISKFDNILKDKTIINQQDLRQISWNGI--PKIHRPVVWKLLIGY-LPVNTKRQEGFLQR 62 (194)
T ss_dssp HHHHHHHHHHHSSCSBCCHHHHHHHHTTCC--CGGGHHHHHHHHTTC-SCSBGGGHHHHHHH
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHcCC--ChHHHHHHHHHHHhh-cCCchhhHHHHHHH
Confidence 478999999999988889999999997652 333333333445555 44555556554333
No 8
>d1k6ya1 a.4.10.1 (A:1-46) N-terminal Zn binding domain of HIV integrase {Human immunodeficiency virus type 1 [TaxId: 11676]}
Probab=22.09 E-value=12 Score=23.35 Aligned_cols=19 Identities=11% Similarity=0.288 Sum_probs=16.4
Q ss_pred HHhhhhcccchhhhhhhcc
Q 028622 84 STLKENYQVGHAEFKKLVD 102 (206)
Q Consensus 84 ~amk~~~~leh~Eikkiv~ 102 (206)
.+|...++|+..+-+.||.
T Consensus 20 ~~L~~~F~ip~~vAr~IV~ 38 (46)
T d1k6ya1 20 RAMASDFNLPPVVAKEIVA 38 (46)
T ss_dssp HHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHH
Confidence 3488999999999999986
No 9
>d1h1oa2 a.3.1.4 (A:94-183) Cytochrome c4 {Thiobacillus ferrooxidans [TaxId: 920]}
Probab=21.94 E-value=9.5 Score=25.33 Aligned_cols=43 Identities=19% Similarity=0.329 Sum_probs=31.7
Q ss_pred HHHHHhhhhhhhhhhHhhHHHHHHHHHHHhhhh-cccchhhhhhhcc
Q 028622 57 SIATAWIGYSIRHLHQSKVDQRLESIESTLKEN-YQVGHAEFKKLVD 102 (206)
Q Consensus 57 Sv~tAWaGYslRhlhq~kVd~RL~SIE~amk~~-~~leh~Eikkiv~ 102 (206)
+++--+..|-.++|++=|-.+|-+.+ |... ..|..+||++|..
T Consensus 42 ~LaGq~~~Yl~~qL~~f~~g~R~~~~---M~~~a~~lsd~ei~~la~ 85 (90)
T d1h1oa2 42 RLAGQRYGYIIQQLTYFHNGTRVNTL---MNQIAKNITVAQMKDVAA 85 (90)
T ss_dssp CCTTCCHHHHHHHHHHHHHTSSCCHH---HHHHHTTCCHHHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHHHcCCcCchH---HHHHHHhCCHHHHHHHHH
Confidence 34445778999999988888886654 5444 4789999998863
No 10
>d2ecba1 a.4.1.1 (A:8-83) Zinc fingers and homeoboxes protein 1, ZHX1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.49 E-value=36 Score=21.69 Aligned_cols=48 Identities=10% Similarity=0.324 Sum_probs=36.0
Q ss_pred HHHHHHHHHHhhhhcccchhhhhhhccCCCchhhHHhhhhhhhhhhhccccccchhhhhhHHHHH
Q 028622 76 DQRLESIESTLKENYQVGHAEFKKLVDPGSSAATTMATAGTTLIIGYGLGWRGGRWYATRKFRRE 140 (206)
Q Consensus 76 d~RL~SIE~amk~~~~leh~Eikkiv~~~~s~~aC~ATagTtlviGY~LGwRGG~wya~rkfrre 140 (206)
.+-|+-+|..-..|.....+|.+.|...-|-.+..|- .||-|++-|..
T Consensus 13 ~~Q~~~Le~~F~~~~~P~~~~r~~LA~~l~l~~~~V~-----------------~WFqNrR~r~k 60 (76)
T d2ecba1 13 AEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREID-----------------AWFTEKKKSKA 60 (76)
T ss_dssp HHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHH-----------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCHHHHH-----------------HhHHHHHHHHH
Confidence 3567789999999999999999999886663333333 39999986543
No 11
>d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]}
Probab=21.12 E-value=10 Score=26.90 Aligned_cols=29 Identities=14% Similarity=0.148 Sum_probs=17.8
Q ss_pred hhcccchhhhhhhccCCC-chhhHHhhhhh
Q 028622 88 ENYQVGHAEFKKLVDPGS-SAATTMATAGT 116 (206)
Q Consensus 88 ~~~~leh~Eikkiv~~~~-s~~aC~ATagT 116 (206)
-.|+|++-.-++|-+..- +.|-|.|||.+
T Consensus 131 ~vYglpE~~r~~i~~~~~IAnPGCyaTa~~ 160 (179)
T d2g17a1 131 AVYGLAEWNVDKLNTANLIAVPGLLKGAAA 160 (179)
T ss_dssp CEECCGGGCHHHHTTCSEEECCCTTTTTHH
T ss_pred cccCchhhhHHHHhcCCEEEcCCchHHHHH
Confidence 367777654445544433 77778777754
No 12
>d1a0pa2 d.163.1.1 (A:111-292) Recombinase XerD {Escherichia coli [TaxId: 562]}
Probab=20.19 E-value=19 Score=23.56 Aligned_cols=43 Identities=14% Similarity=0.217 Sum_probs=23.7
Q ss_pred ccchhhhhhhccCCC-chhhHHhhhhhhhhhhhccccccchhhhh
Q 028622 91 QVGHAEFKKLVDPGS-SAATTMATAGTTLIIGYGLGWRGGRWYAT 134 (206)
Q Consensus 91 ~leh~Eikkiv~~~~-s~~aC~ATagTtlviGY~LGwRGG~wya~ 134 (206)
.|..|||++|.+... .-|.=+-- -.-+.+.|..|.|-|-..+.
T Consensus 2 ~Lt~eei~~ll~~~~~~~~~~lRd-~~l~~l~~~tG~R~~ei~~L 45 (182)
T d1a0pa2 2 DLSEAQVERLLQAPLIDQPLELRD-KAMLEVLYATGLRVSELVGL 45 (182)
T ss_dssp CCCHHHHHHHHHCSCTTSHHHHHH-HHHHHHHHHHCCCHHHHTTC
T ss_pred CCCHHHHHHHHhCcccCCcHHHHH-HHHHHHHHHhCCccCCcccc
Confidence 378899999987543 22211111 11133566777776655443
Done!