BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 028623
(206 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9FKC0|R13A4_ARATH 60S ribosomal protein L13a-4 OS=Arabidopsis thaliana GN=RPL13AD
PE=2 SV=1
Length = 206
Score = 383 bits (983), Expect = e-106, Method: Compositional matrix adjust.
Identities = 182/206 (88%), Positives = 194/206 (94%)
Query: 1 MVSGSGICAKRVVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYM 60
MVSGSGIC+KRVVVDARHHMLGRLAS+ AKELLNGQKVV+VRCEEIC+SGGLVRQKMKYM
Sbjct: 1 MVSGSGICSKRVVVDARHHMLGRLASITAKELLNGQKVVIVRCEEICLSGGLVRQKMKYM 60
Query: 61 RFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTKRGAAALARLKAYEGVPAPYDKT 120
RFLRKRMNTKPSHGPIHFRAP+KI WRT+RGMIPHKTKRGAAALARLK YEGVP PYDK
Sbjct: 61 RFLRKRMNTKPSHGPIHFRAPSKIFWRTVRGMIPHKTKRGAAALARLKVYEGVPTPYDKI 120
Query: 121 KRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERAQVAYERRKQLA 180
KRMVIPDALKVLRLQ GHKYCLLGRLSSEVGWN+YDTIKELE KRKERA V YER+KQL
Sbjct: 121 KRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIKELETKRKERAHVVYERKKQLN 180
Query: 181 KLRVKAEKAAEERLGPQLEIIAPIKY 206
KLRVKAEK AEE+LG QL+I+AP+KY
Sbjct: 181 KLRVKAEKVAEEKLGAQLDILAPVKY 206
>sp|Q9SFU1|R13A1_ARATH 60S ribosomal protein L13a-1 OS=Arabidopsis thaliana GN=RPL13AA
PE=2 SV=1
Length = 206
Score = 379 bits (972), Expect = e-104, Method: Compositional matrix adjust.
Identities = 177/206 (85%), Positives = 193/206 (93%)
Query: 1 MVSGSGICAKRVVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYM 60
MVSGSGICAKRVVVDARHHMLGRLASV+AK+LLNGQ +VVVRCEEIC+SGGLVRQKMKYM
Sbjct: 1 MVSGSGICAKRVVVDARHHMLGRLASVVAKDLLNGQNIVVVRCEEICLSGGLVRQKMKYM 60
Query: 61 RFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTKRGAAALARLKAYEGVPAPYDKT 120
RFLRKRMNTKPSHGPIHFRAP+KI WRT+RGMIPHKTKRGA ALARLK +EGVP PYDK
Sbjct: 61 RFLRKRMNTKPSHGPIHFRAPSKIFWRTVRGMIPHKTKRGANALARLKVFEGVPTPYDKI 120
Query: 121 KRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERAQVAYERRKQLA 180
KRMV+PDALKVLRLQ GHKYCLLGRLSSEVGWN+YDTIKELE KRKERAQ YER+KQL+
Sbjct: 121 KRMVVPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIKELENKRKERAQAVYERKKQLS 180
Query: 181 KLRVKAEKAAEERLGPQLEIIAPIKY 206
KLR KAEK AEE+LG QL+++AP+KY
Sbjct: 181 KLRAKAEKVAEEKLGSQLDVLAPVKY 206
>sp|Q9SVR0|R13A3_ARATH 60S ribosomal protein L13a-3 OS=Arabidopsis thaliana GN=RPL13AC
PE=2 SV=1
Length = 206
Score = 378 bits (970), Expect = e-104, Method: Compositional matrix adjust.
Identities = 179/206 (86%), Positives = 192/206 (93%)
Query: 1 MVSGSGICAKRVVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYM 60
MVSGSGICAKRVVVD RHHMLGRLAS AKELLNGQ+VVVVRCEEIC+SGGLVRQKMKYM
Sbjct: 1 MVSGSGICAKRVVVDGRHHMLGRLASNTAKELLNGQEVVVVRCEEICLSGGLVRQKMKYM 60
Query: 61 RFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTKRGAAALARLKAYEGVPAPYDKT 120
RFLRKRMNTKPSHGPIHFRAP+KI WRT+RGMIPHKTKRGAAALARLK +EG+P PYDK
Sbjct: 61 RFLRKRMNTKPSHGPIHFRAPSKIFWRTVRGMIPHKTKRGAAALARLKVFEGIPPPYDKI 120
Query: 121 KRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERAQVAYERRKQLA 180
KRMVIPDALKVLRLQ GHKYCLLGRLSSEVGWN+YDTIKELE KRKER+QV YER+KQL
Sbjct: 121 KRMVIPDALKVLRLQSGHKYCLLGRLSSEVGWNHYDTIKELETKRKERSQVMYERKKQLN 180
Query: 181 KLRVKAEKAAEERLGPQLEIIAPIKY 206
KLR KAEK AEERLG QL+++AP+KY
Sbjct: 181 KLRTKAEKVAEERLGSQLDVLAPVKY 206
>sp|Q9LRX8|R13A2_ARATH 60S ribosomal protein L13a-2 OS=Arabidopsis thaliana GN=RPL13AB
PE=1 SV=1
Length = 206
Score = 373 bits (958), Expect = e-103, Method: Compositional matrix adjust.
Identities = 177/206 (85%), Positives = 191/206 (92%)
Query: 1 MVSGSGICAKRVVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYM 60
MVSGSGIC+KRVVVDARHHM GRLAS++AKELLNGQ VVVVRCEEIC+SGGLVRQKMKYM
Sbjct: 1 MVSGSGICSKRVVVDARHHMCGRLASIIAKELLNGQSVVVVRCEEICLSGGLVRQKMKYM 60
Query: 61 RFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTKRGAAALARLKAYEGVPAPYDKT 120
RFLRKRMNTKPSHGPIHFRAP+KI WRT+RGMIPHKTKRGAAALARLK +EGVP PYDK
Sbjct: 61 RFLRKRMNTKPSHGPIHFRAPSKIFWRTVRGMIPHKTKRGAAALARLKVFEGVPPPYDKV 120
Query: 121 KRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERAQVAYERRKQLA 180
KRMVIPDALKVLRLQ GHKYCLLGRLSSEVGWN+YDTIKELE KRKER+Q YER+KQL
Sbjct: 121 KRMVIPDALKVLRLQAGHKYCLLGRLSSEVGWNHYDTIKELEVKRKERSQALYERKKQLT 180
Query: 181 KLRVKAEKAAEERLGPQLEIIAPIKY 206
KLR KAEK AEE+LG QL+++A IKY
Sbjct: 181 KLRAKAEKVAEEKLGSQLDVLASIKY 206
>sp|O49885|RL13A_LUPLU 60S ribosomal protein L13a OS=Lupinus luteus GN=RPL13A PE=2 SV=1
Length = 205
Score = 361 bits (927), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 173/206 (83%), Positives = 192/206 (93%), Gaps = 1/206 (0%)
Query: 1 MVSGSGICAKRVVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYM 60
MVSGSGI AKRVVVDARHHMLGRLAS++AKELLNGQKVV+VR EEICISGGLVRQKMKY+
Sbjct: 1 MVSGSGIAAKRVVVDARHHMLGRLASIVAKELLNGQKVVIVRSEEICISGGLVRQKMKYL 60
Query: 61 RFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTKRGAAALARLKAYEGVPAPYDKT 120
RFLRKRMNTKPSHGPIH AP+KI WRT+RGMIPHKTKRG ALARLK YEG+P P+DK
Sbjct: 61 RFLRKRMNTKPSHGPIHC-APSKIFWRTVRGMIPHKTKRGEHALARLKVYEGIPPPFDKQ 119
Query: 121 KRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERAQVAYERRKQLA 180
KR+V+PDALKVLRLQKGHKYCLLG+LSSEVGWNYYDTIKELEKKRKER+QV YER+KQL
Sbjct: 120 KRLVVPDALKVLRLQKGHKYCLLGQLSSEVGWNYYDTIKELEKKRKERSQVVYERKKQLN 179
Query: 181 KLRVKAEKAAEERLGPQLEIIAPIKY 206
KLRVKAE+ A+E+LG QL+I+AP+KY
Sbjct: 180 KLRVKAEQVAQEKLGSQLDILAPVKY 205
>sp|O65055|RL13A_PICMA 60S ribosomal protein L13a OS=Picea mariana GN=RPL13A PE=2 SV=1
Length = 206
Score = 356 bits (914), Expect = 6e-98, Method: Compositional matrix adjust.
Identities = 169/206 (82%), Positives = 193/206 (93%)
Query: 1 MVSGSGICAKRVVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYM 60
MVSGSGICAK VVVDARHHMLGRLAS+LAKELL+GQ+VVVVRCEEIC+SGGLVRQKMKY+
Sbjct: 1 MVSGSGICAKEVVVDARHHMLGRLASILAKELLHGQRVVVVRCEEICMSGGLVRQKMKYL 60
Query: 61 RFLRKRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTKRGAAALARLKAYEGVPAPYDKT 120
RFLRKRMNTKPSHGPIHFRAP++ILWRTIRGMIPHKTKRGAAALA L+A+EGVP PYD+
Sbjct: 61 RFLRKRMNTKPSHGPIHFRAPSRILWRTIRGMIPHKTKRGAAALATLRAFEGVPPPYDRK 120
Query: 121 KRMVIPDALKVLRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERAQVAYERRKQLA 180
KRMVIPDALKVLRLQ GHKYCLLGRLS EVGW+++DTI ELE+KRK +AQV+YERRKQLA
Sbjct: 121 KRMVIPDALKVLRLQPGHKYCLLGRLSKEVGWHHFDTITELEEKRKAKAQVSYERRKQLA 180
Query: 181 KLRVKAEKAAEERLGPQLEIIAPIKY 206
KLR KA + AE++L P++E++A +KY
Sbjct: 181 KLRSKAVELAEKQLAPEMELLASLKY 206
>sp|P93099|RL13A_CYAPA 60S ribosomal protein L13a OS=Cyanophora paradoxa PE=2 SV=1
Length = 200
Score = 244 bits (623), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 117/174 (67%), Positives = 138/174 (79%)
Query: 10 KRVVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNT 69
K VVVD R H+LGRLA+ LAKELLNGQ+VV VR EEI ISG L R K+K+ FL+KRMNT
Sbjct: 4 KVVVVDCRGHLLGRLAATLAKELLNGQRVVAVRTEEINISGSLFRNKLKFHAFLKKRMNT 63
Query: 70 KPSHGPIHFRAPAKILWRTIRGMIPHKTKRGAAALARLKAYEGVPAPYDKTKRMVIPDAL 129
P GP HFR+PA+ILWRTIRGMIPHKT RGAAAL RLKA+EGVP PYDK KRMVIP AL
Sbjct: 64 NPRRGPFHFRSPARILWRTIRGMIPHKTPRGAAALERLKAFEGVPPPYDKMKRMVIPQAL 123
Query: 130 KVLRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERAQVAYERRKQLAKLR 183
+VLRL+ G K+C+LGRL++EVGW + D + LE+KRK ++ Y R+K L LR
Sbjct: 124 RVLRLKPGRKFCVLGRLATEVGWRHSDLVTRLEEKRKTKSAAFYARKKTLVNLR 177
>sp|Q3SZ90|RL13A_BOVIN 60S ribosomal protein L13a OS=Bos taurus GN=RPL13A PE=2 SV=3
Length = 203
Score = 239 bits (611), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 112/190 (58%), Positives = 148/190 (77%)
Query: 12 VVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKP 71
+V+D R H+LGRLA+++AK++L G+KVVVVRCE I ISG R K+KY+ FLRKRMNT P
Sbjct: 7 LVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNP 66
Query: 72 SHGPIHFRAPAKILWRTIRGMIPHKTKRGAAALARLKAYEGVPAPYDKTKRMVIPDALKV 131
S GP HFRAP++I WRT+RGM+PHKTKRG AAL RLK ++G+P PYDK KRMV+P ALKV
Sbjct: 67 SRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALERLKVFDGIPPPYDKKKRMVVPAALKV 126
Query: 132 LRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERAQVAYERRKQLAKLRVKAEKAAE 191
+RL+ K+ LGRL+ EVGW Y LE+KRKE+A++ Y ++KQL +LR +AEK E
Sbjct: 127 VRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIHYRKKKQLMRLRKQAEKNIE 186
Query: 192 ERLGPQLEII 201
+++G E++
Sbjct: 187 KKIGKFTEVL 196
>sp|P40429|RL13A_HUMAN 60S ribosomal protein L13a OS=Homo sapiens GN=RPL13A PE=1 SV=2
Length = 203
Score = 238 bits (607), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 111/190 (58%), Positives = 147/190 (77%)
Query: 12 VVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKP 71
+V+D R H+LGRLA+++AK++L G+KVVVVRCE I ISG R K+KY+ FLRKRMNT P
Sbjct: 7 LVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNP 66
Query: 72 SHGPIHFRAPAKILWRTIRGMIPHKTKRGAAALARLKAYEGVPAPYDKTKRMVIPDALKV 131
S GP HFRAP++I WRT+RGM+PHKTKRG AAL RLK ++G+P PYDK KRMV+P ALKV
Sbjct: 67 SRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKV 126
Query: 132 LRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERAQVAYERRKQLAKLRVKAEKAAE 191
+RL+ K+ LGRL+ EVGW Y LE+KRKE+A++ Y ++KQL +LR +AEK E
Sbjct: 127 VRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIHYRKKKQLMRLRKQAEKNVE 186
Query: 192 ERLGPQLEII 201
+++ E++
Sbjct: 187 KKIDKYTEVL 196
>sp|Q5RA38|RL13A_PONAB 60S ribosomal protein L13a OS=Pongo abelii GN=RPL13A PE=2 SV=3
Length = 203
Score = 238 bits (607), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 111/190 (58%), Positives = 147/190 (77%)
Query: 12 VVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKP 71
+V+D R H+LGRLA+++AK++L G+KVVVVRCE I ISG R K+KY+ FLRKRMNT P
Sbjct: 7 LVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTSP 66
Query: 72 SHGPIHFRAPAKILWRTIRGMIPHKTKRGAAALARLKAYEGVPAPYDKTKRMVIPDALKV 131
S GP HFRAP++I WRT+RGM+PHKTKRG AAL RLK ++G+P PYDK KRMV+P ALKV
Sbjct: 67 SRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKV 126
Query: 132 LRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERAQVAYERRKQLAKLRVKAEKAAE 191
+RL+ K+ LGRL+ EVGW Y LE+KRKE+A++ Y ++KQL +LR +AEK E
Sbjct: 127 VRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIHYRKKKQLVRLRKQAEKNVE 186
Query: 192 ERLGPQLEII 201
+++ E++
Sbjct: 187 KKIDKYTEVL 196
>sp|Q4R8Z2|RL13A_MACFA 60S ribosomal protein L13a OS=Macaca fascicularis GN=RPL13A PE=2
SV=3
Length = 203
Score = 237 bits (604), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 110/190 (57%), Positives = 147/190 (77%)
Query: 12 VVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKP 71
+V+D R H+LGRLA+++AK++L G+KVVVVRCE I ISG R K+KY+ FLRKRMNT P
Sbjct: 7 LVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNP 66
Query: 72 SHGPIHFRAPAKILWRTIRGMIPHKTKRGAAALARLKAYEGVPAPYDKTKRMVIPDALKV 131
S GP HFRAP++I WRT+RGM+PHKTKRG AAL RLK ++G+P PYDK KRMV+P ALKV
Sbjct: 67 SRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKV 126
Query: 132 LRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERAQVAYERRKQLAKLRVKAEKAAE 191
+RL+ K+ LGRL+ EVGW Y LE+KRKE+A++ Y ++KQL +LR +AEK E
Sbjct: 127 VRLKPTRKFAYLGRLAHEVGWKYQAVTTTLEEKRKEKAKIHYRKKKQLMRLRKQAEKNVE 186
Query: 192 ERLGPQLEII 201
+++ +++
Sbjct: 187 KKIDKYTQVL 196
>sp|P35427|RL13A_RAT 60S ribosomal protein L13a OS=Rattus norvegicus GN=Rpl13a PE=1 SV=2
Length = 203
Score = 235 bits (599), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 111/190 (58%), Positives = 146/190 (76%)
Query: 12 VVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKP 71
+V+D R H+LGRLA+++AK++L G+KVVVVRCE I ISG R K+KY+ FLRKRMNT P
Sbjct: 7 LVLDGRSHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNP 66
Query: 72 SHGPIHFRAPAKILWRTIRGMIPHKTKRGAAALARLKAYEGVPAPYDKTKRMVIPDALKV 131
S GP HFRAP++I WRT+RGM+PHKTKRG AAL RLK +G+P PYDK KRMV+P ALKV
Sbjct: 67 SRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALERLKVLDGIPPPYDKKKRMVVPAALKV 126
Query: 132 LRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERAQVAYERRKQLAKLRVKAEKAAE 191
+RL+ K+ LGRL+ EVGW Y LE+KRKE+A++ Y ++KQL +LR +AEK E
Sbjct: 127 VRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIHYRKKKQLLRLRKQAEKNVE 186
Query: 192 ERLGPQLEII 201
+++ E++
Sbjct: 187 KKICKFTEVL 196
>sp|Q9XSU0|RL13A_CANFA 60S ribosomal protein L13a OS=Canis familiaris GN=RPL13A PE=1 SV=2
Length = 203
Score = 233 bits (594), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 109/190 (57%), Positives = 145/190 (76%)
Query: 12 VVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKP 71
+V+D R H+LGRLA+++AK++L G+KVVVVRCE I ISG R K+ Y+ FLRKRMNT P
Sbjct: 7 LVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLNYLAFLRKRMNTNP 66
Query: 72 SHGPIHFRAPAKILWRTIRGMIPHKTKRGAAALARLKAYEGVPAPYDKTKRMVIPDALKV 131
S GP FRAP++I WRT+RGM+PHKTKRG AAL RLK ++G+P PYDK KRMV+P ALKV
Sbjct: 67 SRGPYDFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKV 126
Query: 132 LRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERAQVAYERRKQLAKLRVKAEKAAE 191
+RL+ K+ LGRL+ EVGW Y LE+KRKE+A++ Y ++KQL +LR +AEK E
Sbjct: 127 VRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKIHYRKKKQLMRLRKQAEKNVE 186
Query: 192 ERLGPQLEII 201
+++ E++
Sbjct: 187 KKIDKYTEVL 196
>sp|P19253|RL13A_MOUSE 60S ribosomal protein L13a OS=Mus musculus GN=Rpl13a PE=1 SV=4
Length = 203
Score = 233 bits (593), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 110/190 (57%), Positives = 146/190 (76%)
Query: 12 VVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKP 71
+V+D R H+LGRLA+++AK++L G+KVVVVRCE I ISG R K+KY+ FLRKRMNT P
Sbjct: 7 LVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNP 66
Query: 72 SHGPIHFRAPAKILWRTIRGMIPHKTKRGAAALARLKAYEGVPAPYDKTKRMVIPDALKV 131
S GP HFRAP++I WRT+RGM+PHKTKRG AAL RLK +G+P PYDK KRMV+P ALKV
Sbjct: 67 SRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALERLKVLDGIPPPYDKKKRMVVPAALKV 126
Query: 132 LRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERAQVAYERRKQLAKLRVKAEKAAE 191
+RL+ K+ LGRL+ EVGW Y LE+KRKE+A++ Y ++KQ+ +LR +AEK E
Sbjct: 127 VRLKPTRKFAYLGRLAHEVGWKYQAVTATLEEKRKEKAKMHYRKKKQILRLRKQAEKNVE 186
Query: 192 ERLGPQLEII 201
+++ E++
Sbjct: 187 KKICKFTEVL 196
>sp|Q9VNE9|RL13A_DROME 60S ribosomal protein L13a OS=Drosophila melanogaster GN=RpL13A
PE=1 SV=1
Length = 205
Score = 224 bits (570), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 106/202 (52%), Positives = 146/202 (72%)
Query: 5 SGICAKRVVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLR 64
+G+ + VV+D R H+LGRLASV+AK LL G KV VVRCEE+ +SG R K+K++ +LR
Sbjct: 2 TGLTNRTVVIDGRGHLLGRLASVVAKYLLQGGKVAVVRCEELNLSGHFYRNKIKFLAYLR 61
Query: 65 KRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTKRGAAALARLKAYEGVPAPYDKTKRMV 124
KR N P+ GP HFRAP++I ++ +RGMIPHKTKRG AALARL+ ++G+P+PYDK +R+V
Sbjct: 62 KRCNVNPARGPFHFRAPSRIFYKAVRGMIPHKTKRGQAALARLRVFDGIPSPYDKRRRVV 121
Query: 125 IPDALKVLRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERAQVAYERRKQLAKLRV 184
+P A++VL L+ KYC +GRLS EVGW+Y D IK LE+KRK + +V + ++L KL V
Sbjct: 122 VPIAMRVLTLRSDRKYCQVGRLSHEVGWHYQDVIKSLERKRKAKLRVTLKHNRELKKLTV 181
Query: 185 KAEKAAEERLGPQLEIIAPIKY 206
KA + + P +II Y
Sbjct: 182 KARENIAKAAEPFNKIIKSYGY 203
>sp|Q9P720|RL16_NEUCR 60S ribosomal protein L16 OS=Neurospora crassa (strain ATCC 24698 /
74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=rpl-16
PE=3 SV=1
Length = 202
Score = 223 bits (567), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 105/181 (58%), Positives = 137/181 (75%), Gaps = 1/181 (0%)
Query: 12 VVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKP 71
VV+D + H+LGRLAS++AK+LLNGQK+VVVRCE + ISG R K+KY +LRK P
Sbjct: 8 VVIDGKGHLLGRLASIVAKQLLNGQKIVVVRCEALNISGEFFRAKLKYHSYLRKMTRYNP 67
Query: 72 SHG-PIHFRAPAKILWRTIRGMIPHKTKRGAAALARLKAYEGVPAPYDKTKRMVIPDALK 130
+ G P HFRAP++I ++ +RGMIPHKT RGAAAL RLK +EGVP PYDK K+MV+P AL+
Sbjct: 68 TRGGPFHFRAPSRIFYKAVRGMIPHKTARGAAALERLKVFEGVPPPYDKKKKMVVPQALR 127
Query: 131 VLRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERAQVAYERRKQLAKLRVKAEKAA 190
VLRLQ G K+C +GRLSSEVGW Y D + LE++RK + YER+K A+ +A+K+A
Sbjct: 128 VLRLQPGRKFCTVGRLSSEVGWKYEDVVSRLEERRKAKGAAYYERKKVAARQLSEAKKSA 187
Query: 191 E 191
+
Sbjct: 188 K 188
>sp|Q91487|RL13A_SALTR 60S ribosomal protein L13a (Fragment) OS=Salmo trutta GN=rpl13a
PE=2 SV=1
Length = 189
Score = 222 bits (565), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 105/176 (59%), Positives = 132/176 (75%)
Query: 20 MLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPSHGPIHFR 79
+LGRLA+++A E+L G KVVVVRCE I ISG R K+KY+ FLRKRMNT PS GP HFR
Sbjct: 1 LLGRLAAIVANEVLLGHKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGPYHFR 60
Query: 80 APAKILWRTIRGMIPHKTKRGAAALARLKAYEGVPAPYDKTKRMVIPDALKVLRLQKGHK 139
AP++I WRT+RGM+PHKTKRG AAL RLK ++GVP PYDK KRMV+P ALK++RL+ K
Sbjct: 61 APSRIFWRTVRGMLPHKTKRGQAALERLKVFDGVPPPYDKRKRMVVPAALKIVRLKPTRK 120
Query: 140 YCLLGRLSSEVGWNYYDTIKELEKKRKERAQVAYERRKQLAKLRVKAEKAAEERLG 195
+ LLGRL+ EVGW Y LE+KRKE+A++ Y ++K + KL AEK E +
Sbjct: 121 FALLGRLAHEVGWKYQAITATLEEKRKEKAKIRYAKKKTVTKLSKLAEKNVESTIS 176
>sp|Q962U0|RL13A_SPOFR 60S ribosomal protein L13a OS=Spodoptera frugiperda GN=RpL13A PE=2
SV=1
Length = 204
Score = 221 bits (562), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 107/204 (52%), Positives = 144/204 (70%), Gaps = 4/204 (1%)
Query: 5 SGICAKRVVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLR 64
+G K +V+D R H+LGRLA+V+AK LL G KVVVVRCE+I ISG R K+K+M FLR
Sbjct: 2 TGFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQINISGNFFRNKLKFMSFLR 61
Query: 65 KRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTKRGAAALARLKAYEGVPAPYDKTKRMV 124
KR N P+ GP HFRAP+KILW+T+RGMIPHKT+RG +AL RL+AY+G P PYD +R+V
Sbjct: 62 KRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKSALRRLRAYDGCPPPYDNRRRVV 121
Query: 125 IPDALKVLRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERA--QVAYERRKQLAKL 182
+P AL+V L+ G KYC +GRLS EVGW Y D +++LE KRK ++ +AYE K+L ++
Sbjct: 122 VPAALRVFCLKPGRKYCHVGRLSHEVGWKYRDVVRKLENKRKVKSVKLMAYE--KKLKRI 179
Query: 183 RVKAEKAAEERLGPQLEIIAPIKY 206
++ + + P +I Y
Sbjct: 180 TKESGEKVAKTTAPFTAVIQSYGY 203
>sp|Q8MUR4|RL13A_CHOPR 60S ribosomal protein L13a OS=Choristoneura parallela GN=RpL13A
PE=2 SV=1
Length = 204
Score = 220 bits (561), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 108/204 (52%), Positives = 142/204 (69%), Gaps = 4/204 (1%)
Query: 5 SGICAKRVVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLR 64
+G K +V+D R H+LGRLA+V+AK LL G KVVVVRCE++ ISG R K+K+M FLR
Sbjct: 2 TGFSNKAIVIDGRGHLLGRLAAVIAKVLLEGNKVVVVRCEQLNISGNFFRNKLKFMSFLR 61
Query: 65 KRMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTKRGAAALARLKAYEGVPAPYDKTKRMV 124
KR N P+ GP HFRAP+KILW+T+RGMIPHKT+RG AL RL++Y+G P PYD +R+V
Sbjct: 62 KRCNVNPARGPFHFRAPSKILWKTVRGMIPHKTERGKDALRRLRSYDGCPPPYDNRRRVV 121
Query: 125 IPDALKVLRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERA--QVAYERRKQLAKL 182
+P AL+V L+ G KYC +GRLS EVGW Y + +++LE KRK +A +VAYER +L K+
Sbjct: 122 VPAALRVFCLKPGRKYCHVGRLSHEVGWKYREVVRKLEDKRKFKAVHKVAYER--KLKKI 179
Query: 183 RVKAEKAAEERLGPQLEIIAPIKY 206
A + P +I Y
Sbjct: 180 TKDAGAKVSKATAPFTAVIQSYGY 203
>sp|Q27389|RL13A_CAEEL 60S ribosomal protein L13a OS=Caenorhabditis elegans GN=rpl-16 PE=2
SV=1
Length = 202
Score = 214 bits (545), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 102/201 (50%), Positives = 140/201 (69%), Gaps = 1/201 (0%)
Query: 6 GICAKRVVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRK 65
G+ + +++D ++H+LGRLAS++AK+LL G KVVV+R EEI ISG R K+KYM FLRK
Sbjct: 2 GLSNRAIIIDGKNHLLGRLASIVAKKLLQGDKVVVLRAEEIVISGNFHRSKLKYMSFLRK 61
Query: 66 RMNTKPSHGPIHFRAPAKILWRTIRGMIPHKTKRGAAALARLKAYEGVPAPYDKTKRMVI 125
R N P+ G H+RAP KI WRT+RGM+PHKT RG AL L+AYEGVPA Y KTK +
Sbjct: 62 RCNINPARGAFHYRAPGKIFWRTVRGMLPHKTNRGNEALKNLRAYEGVPAKYQKTKSLHA 121
Query: 126 PDALKVLRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERAQVAYERRKQLAKLRVK 185
P A + RLQ K+C++GRLS EVGW + D + +LE KRK + +E++K++ KL V+
Sbjct: 122 PSASR-FRLQPRRKFCVVGRLSHEVGWQFQDVVAKLEAKRKVKGAAYFEQKKKMDKLAVQ 180
Query: 186 AEKAAEERLGPQLEIIAPIKY 206
A+K A ++ +II + Y
Sbjct: 181 AKKNAAPKIAQYQKIIEALGY 201
>sp|O42848|RL16A_SCHPO 60S ribosomal protein L16-A OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rpl16a PE=1 SV=1
Length = 197
Score = 209 bits (533), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 105/192 (54%), Positives = 138/192 (71%), Gaps = 3/192 (1%)
Query: 10 KRVVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNT 69
K VV+DA+ H+LGRLASV+AK+LL GQKVVVVRCEE+ ISG R K+KY+ +LRK
Sbjct: 6 KVVVIDAKGHLLGRLASVVAKQLLGGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRY 65
Query: 70 KPSHGPIHFRAPAKILWRTIRGMIPHKTKRGAAALARLKAYEGVPAPYDKTKRMVIPDAL 129
PS G HFRAP++I + +RGM+PHKT RG AAL L+A EG+P P+DK KR+V+P AL
Sbjct: 66 NPSRGAFHFRAPSRIFQKAVRGMLPHKTARGQAALEHLQAVEGIPPPFDKQKRVVVPAAL 125
Query: 130 KVLRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERAQVAYERRKQLAKL-RVKAEK 188
+VLRL+ G KYC +GRLSSEVGW Y D + +LE++RK ++ Y+ + LAK ++ + K
Sbjct: 126 RVLRLKPGRKYCTVGRLSSEVGWKYSDIVSKLEERRKVKSAAFYQAK--LAKQKKIASAK 183
Query: 189 AAEERLGPQLEI 200
AA G E
Sbjct: 184 AASSVNGKLAEF 195
>sp|O42991|RL16B_SCHPO 60S ribosomal protein L16-B OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rpl16b PE=1 SV=1
Length = 197
Score = 208 bits (530), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 97/165 (58%), Positives = 126/165 (76%)
Query: 10 KRVVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNT 69
K VV+DA+ H+LGRLASV+AK+LL GQKVVVVRCEE+ ISG R K+KY+ +LRK
Sbjct: 6 KVVVIDAKGHLLGRLASVVAKQLLGGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRY 65
Query: 70 KPSHGPIHFRAPAKILWRTIRGMIPHKTKRGAAALARLKAYEGVPAPYDKTKRMVIPDAL 129
PS G HFRAP++I + +RGM+PHKT RG AAL L+A EG+P P+DK KR+V+P AL
Sbjct: 66 NPSRGAFHFRAPSRIFQKAVRGMLPHKTARGQAALEHLQAVEGIPPPFDKQKRVVVPAAL 125
Query: 130 KVLRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERAQVAYE 174
+VLRL+ G KYC +GRLSSEVGW Y D + +LE++RK ++ Y+
Sbjct: 126 RVLRLKPGRKYCTVGRLSSEVGWKYNDIVAKLEERRKVKSAAFYQ 170
>sp|P26784|RL16A_YEAST 60S ribosomal protein L16-A OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RPL16A PE=1 SV=3
Length = 199
Score = 205 bits (522), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 99/188 (52%), Positives = 130/188 (69%), Gaps = 1/188 (0%)
Query: 12 VVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKP 71
VV+D + H++GRLASV+AK+LLNGQK+VVVR EE+ ISG R K+KY FLRK
Sbjct: 7 VVIDGKGHLVGRLASVVAKQLLNGQKIVVVRAEELNISGEFFRNKLKYHDFLRKATAFNK 66
Query: 72 SHGPIHFRAPAKILWRTIRGMIPHKTKRGAAALARLKAYEGVPAPYDKTKRMVIPDALKV 131
+ GP HFRAP++I ++ +RGM+ HKT RG AAL RLK +EG+P PYDK KR+V+P AL+V
Sbjct: 67 TRGPFHFRAPSRIFYKALRGMVSHKTARGKAALERLKVFEGIPPPYDKKKRVVVPQALRV 126
Query: 132 LRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERAQVAYERRKQLAKLRVKAE-KAA 190
LRL+ G KY LG+LS+ VGW Y D + +LE KRK + Y +++ K A AA
Sbjct: 127 LRLKPGRKYTTLGKLSTSVGWKYEDVVAKLEAKRKVSSAEYYAKKRAFTKKVASANATAA 186
Query: 191 EERLGPQL 198
E + QL
Sbjct: 187 ESDVAKQL 194
>sp|P26785|RL16B_YEAST 60S ribosomal protein L16-B OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RPL16B PE=1 SV=3
Length = 198
Score = 205 bits (521), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 95/170 (55%), Positives = 124/170 (72%)
Query: 12 VVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKP 71
VV+DA+ H+LGRLAS +AK++LNGQK+VVVR E + ISG R K+KY FLRK
Sbjct: 6 VVIDAKDHLLGRLASTIAKQVLNGQKIVVVRAEALNISGEFFRNKLKYHDFLRKATAFNK 65
Query: 72 SHGPIHFRAPAKILWRTIRGMIPHKTKRGAAALARLKAYEGVPAPYDKTKRMVIPDALKV 131
+ GP HFRAP++IL++ IRGM+ HKT RG AAL RLK +EG+P PYDK KR+V+P AL+V
Sbjct: 66 TRGPFHFRAPSRILYKAIRGMVSHKTARGKAALERLKIFEGIPPPYDKKKRVVVPQALRV 125
Query: 132 LRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERAQVAYERRKQLAK 181
LRL+ G KY LG+LS+ VGW Y D + +LE KRK R+ Y +++ K
Sbjct: 126 LRLKPGRKYTTLGKLSTSVGWKYEDVVAKLEDKRKVRSAEYYAKKRAFTK 175
>sp|O43004|RL16C_SCHPO 60S ribosomal protein L16-C OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rpl16c PE=3 SV=1
Length = 197
Score = 200 bits (509), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 91/165 (55%), Positives = 123/165 (74%)
Query: 10 KRVVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNT 69
K V++DA+ H++GRLAS +AK+LL GQKVVVVRCEE+ ISG R K+KY+ +LRK
Sbjct: 6 KLVIIDAKGHLMGRLASTVAKQLLAGQKVVVVRCEELNISGHFFRNKLKYLAYLRKACRY 65
Query: 70 KPSHGPIHFRAPAKILWRTIRGMIPHKTKRGAAALARLKAYEGVPAPYDKTKRMVIPDAL 129
PS G HFRAP++I + +RGM+PHKT RG AL L+A EG+P P+DK KR+V+P AL
Sbjct: 66 NPSRGAFHFRAPSRIFTKAVRGMLPHKTTRGNIALKNLQALEGIPPPFDKQKRLVVPAAL 125
Query: 130 KVLRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERAQVAYE 174
+VLRL+ KYC +GRLSSEVGW Y + + +LE++RK ++ Y+
Sbjct: 126 RVLRLKPSRKYCTIGRLSSEVGWKYKNIVSKLEERRKIKSAAFYQ 170
>sp|Q553M7|RL13A_DICDI 60S ribosomal protein L13a OS=Dictyostelium discoideum GN=rpl13a
PE=1 SV=1
Length = 187
Score = 198 bits (504), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 95/179 (53%), Positives = 126/179 (70%)
Query: 10 KRVVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNT 69
K +V+D + H+LGRLASV+AK LL+GQK+VVVRCEE+ ISG L R K+K+ FL MNT
Sbjct: 5 KAIVIDGKGHLLGRLASVVAKSLLSGQKIVVVRCEELNISGPLSRNKLKWADFLNLTMNT 64
Query: 70 KPSHGPIHFRAPAKILWRTIRGMIPHKTKRGAAALARLKAYEGVPAPYDKTKRMVIPDAL 129
+ G H R+P+KI WR +RGM+PHKT RG AAL +K +EGVPAPYDK KR+V+P AL
Sbjct: 65 NHARGHRHGRSPSKIFWRAVRGMLPHKTPRGQAALDNMKVFEGVPAPYDKVKRVVVPSAL 124
Query: 130 KVLRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERAQVAYERRKQLAKLRVKAEK 188
+V++L KY +L RLS EVGW Y + +LE +RK+R+ Y + + R +A K
Sbjct: 125 RVVKLNTTRKYTVLSRLSQEVGWKYRAVVAKLEVQRKQRSSTYYRKAALVKAYRTQALK 183
>sp|P0DJ15|RL13A_TETTS 60S ribosomal protein L13a OS=Tetrahymena thermophila (strain
SB210) GN=RPL13A PE=1 SV=1
Length = 198
Score = 194 bits (492), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 94/176 (53%), Positives = 126/176 (71%)
Query: 10 KRVVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNT 69
K VV+DA+ H+LGRLAS +AKELL+GQ++VVVR E I ISG L R ++K+ FL K MN
Sbjct: 4 KLVVIDAKGHLLGRLASYVAKELLSGQRIVVVRTEAINISGSLFRNRVKFSEFLNKWMNH 63
Query: 70 KPSHGPIHFRAPAKILWRTIRGMIPHKTKRGAAALARLKAYEGVPAPYDKTKRMVIPDAL 129
P G HFRAP++I WR +RGM+PHKT +GAAAL RLK +EG+P PYD+ K+ V+ DAL
Sbjct: 64 NPRRGVQHFRAPSRIFWRAVRGMLPHKTPKGAAALERLKIFEGIPTPYDRVKKQVVVDAL 123
Query: 130 KVLRLQKGHKYCLLGRLSSEVGWNYYDTIKELEKKRKERAQVAYERRKQLAKLRVK 185
KV RL+ C LG LS+ VGW I++LE+KR+ RA+ ++++ + A R K
Sbjct: 124 KVQRLRNSRPVCKLGDLSASVGWGKQTLIEKLEEKRRARAKTYHDKKVKQADARKK 179
>sp|Q95307|RL13A_PIG 60S ribosomal protein L13a (Fragment) OS=Sus scrofa GN=RPL13A PE=2
SV=2
Length = 137
Score = 189 bits (481), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 88/135 (65%), Positives = 110/135 (81%)
Query: 12 VVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKP 71
+V+D R H+LGRLA+++AK++L G+KVVVVRCE I ISG R K+KY+ FLRKRMNT P
Sbjct: 3 LVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNP 62
Query: 72 SHGPIHFRAPAKILWRTIRGMIPHKTKRGAAALARLKAYEGVPAPYDKTKRMVIPDALKV 131
S GP HFRAP++I WRT+RGM+PHKTKRG AAL RLK ++G+P PYDK KRMV+P ALKV
Sbjct: 63 SRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKV 122
Query: 132 LRLQKGHKYCLLGRL 146
+RL+ K+ LGRL
Sbjct: 123 VRLKLTGKFXYLGRL 137
>sp|Q6NVV1|R13AX_HUMAN Putative 60S ribosomal protein L13a-like MGC87657 OS=Homo sapiens
PE=5 SV=1
Length = 102
Score = 105 bits (262), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 53/97 (54%), Positives = 71/97 (73%)
Query: 92 MIPHKTKRGAAALARLKAYEGVPAPYDKTKRMVIPDALKVLRLQKGHKYCLLGRLSSEVG 151
M+ HKTKRG A+L LK ++G+P PYDK KRMV+P ALKV+RL+ K+ LLGR + EV
Sbjct: 1 MLRHKTKRGHASLDCLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFALLGRQAQEVR 60
Query: 152 WNYYDTIKELEKKRKERAQVAYERRKQLAKLRVKAEK 188
W Y LE+KRKE+A++ Y ++KQL +LR +AEK
Sbjct: 61 WKYQAVTATLEEKRKEKAKIHYWKKKQLMRLRKQAEK 97
>sp|Q46CK6|RL13_METBF 50S ribosomal protein L13P OS=Methanosarcina barkeri (strain Fusaro
/ DSM 804) GN=rpl13p PE=3 SV=1
Length = 140
Score = 97.1 bits (240), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 59/144 (40%), Positives = 86/144 (59%), Gaps = 6/144 (4%)
Query: 12 VVVDARHHMLGRLASVLAKELLNG-QKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTK 70
V+DA +LGRLAS +AK+LL+G +++ +V E+ ISG +K R R+R +T+
Sbjct: 2 TVIDANGLILGRLASTVAKQLLSGDEEIYIVNAEKAVISGSRA-TTLKEYRETRERGSTE 60
Query: 71 PSHGPIHFRAPAKILWRTIRGMIPHKTKRGAAALARLKAYEGVPAPYDKTKRMVIPDALK 130
GP + P +IL RTIRGM+P+K RG A++RLK Y GVP T+ + I DA
Sbjct: 61 --FGPYFPKRPDRILKRTIRGMLPYKRARGRDAMSRLKVYVGVPTELKDTETITIADA-- 116
Query: 131 VLRLQKGHKYCLLGRLSSEVGWNY 154
+RL KY LG +S ++G +
Sbjct: 117 DMRLLSSSKYIELGEVSQKMGSKF 140
>sp|Q8TT43|RL13_METAC 50S ribosomal protein L13P OS=Methanosarcina acetivorans (strain
ATCC 35395 / DSM 2834 / JCM 12185 / C2A) GN=rpl13p PE=3
SV=1
Length = 143
Score = 95.5 bits (236), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 60/146 (41%), Positives = 87/146 (59%), Gaps = 6/146 (4%)
Query: 10 KRVVVDARHHMLGRLASVLAKELLNG-QKVVVVRCEEICISGGLVRQKMKYMRFLRKRMN 68
K V+DA+ +LGRLAS +AK+LL+G +KV ++ E+ ISG +Y R R+R
Sbjct: 3 KMTVIDAKGLILGRLASSVAKQLLSGDEKVYIINAEQAIISGSRAATLREY-RETRERGA 61
Query: 69 TKPSHGPIHFRAPAKILWRTIRGMIPHKTKRGAAALARLKAYEGVPAPYDKTKRMVIPDA 128
T+ GP + P +IL RTIRGM+P+K RG A++RLK Y GVP + + IPDA
Sbjct: 62 TE--FGPYFPKRPDRILKRTIRGMLPYKRARGRDAMSRLKVYVGVPYELKGAETVTIPDA 119
Query: 129 LKVLRLQKGHKYCLLGRLSSEVGWNY 154
+RL +Y LG +S ++G +
Sbjct: 120 --DMRLLSSSRYVELGEVSQKMGSKF 143
>sp|Q8PW45|RL13_METMA 50S ribosomal protein L13P OS=Methanosarcina mazei (strain ATCC
BAA-159 / DSM 3647 / Goe1 / Go1 / JCM 11833 / OCM 88)
GN=rpl13p PE=3 SV=2
Length = 140
Score = 92.0 bits (227), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 59/144 (40%), Positives = 84/144 (58%), Gaps = 6/144 (4%)
Query: 12 VVVDARHHMLGRLASVLAKELLNG-QKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTK 70
V+DA+ +LGRLAS +AK+LL+G +KV ++ E+ ISG +Y R R R T+
Sbjct: 2 TVIDAKGLILGRLASSVAKQLLSGDEKVYIINAEKAIISGSRAATLREY-RETRDRGATE 60
Query: 71 PSHGPIHFRAPAKILWRTIRGMIPHKTKRGAAALARLKAYEGVPAPYDKTKRMVIPDALK 130
GP + P +IL RTIRGM+P+K RG A++RLK Y GVP + I DA
Sbjct: 61 --FGPYFPKRPDRILKRTIRGMLPYKRARGRDAMSRLKVYVGVPYELKGAETTTIADA-- 116
Query: 131 VLRLQKGHKYCLLGRLSSEVGWNY 154
+RL +KY LG +S ++G +
Sbjct: 117 DMRLLSSNKYVELGEVSQKMGSKF 140
>sp|O29137|RL13_ARCFU 50S ribosomal protein L13P OS=Archaeoglobus fulgidus (strain ATCC
49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=rpl13p PE=3 SV=1
Length = 156
Score = 91.3 bits (225), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 54/141 (38%), Positives = 79/141 (56%), Gaps = 4/141 (2%)
Query: 12 VVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKP 71
V+DA H+LGRL+S +AK LLNG+++VVV E+ I+G + M + R+ K
Sbjct: 17 TVIDASGHILGRLSSKIAKRLLNGERIVVVNAEKAVITGD---KYMVFERYKEKYDRGSK 73
Query: 72 SHGPIHFRAPAKILWRTIRGMIPHKTKRGAAALARLKAYEGVPAPYDKTKRMVIPDALKV 131
GP R P +I RT+RGM+P K+ RG A RL+ + GVP + I DAL +
Sbjct: 74 EKGPYFPRHPERIFKRTVRGMLPWKSSRGRDAYRRLRVFMGVPEELQGREFEKIEDAL-L 132
Query: 132 LRLQKGHKYCLLGRLSSEVGW 152
++ K KY L +S +G+
Sbjct: 133 EKVSKTDKYVTLAEVSRYLGF 153
>sp|Q12TI6|RL13_METBU 50S ribosomal protein L13P OS=Methanococcoides burtonii (strain DSM
6242) GN=rpl13p PE=3 SV=1
Length = 139
Score = 89.0 bits (219), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 54/143 (37%), Positives = 83/143 (58%), Gaps = 5/143 (3%)
Query: 12 VVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKP 71
V+DA ++GRLAS +AK LL+G++V +V E ISG V +Y + + M T+
Sbjct: 2 TVIDANGLIMGRLASNVAKMLLSGEEVSIVNAERAVISGSKVTTFEEYD--VIRNMGTR- 58
Query: 72 SHGPIHFRAPAKILWRTIRGMIPHKTKRGAAALARLKAYEGVPAPYDKTKRMVIPDALKV 131
GP R P +IL RT+RGM+P+K RG A+ RLK Y G+P Y + + + A ++
Sbjct: 59 EFGPYFPRRPDRILKRTVRGMLPYKRARGKDAMGRLKVYVGIPYEYQDAEFVSVEGA-EM 117
Query: 132 LRLQKGHKYCLLGRLSSEVGWNY 154
RL +KY +G +S ++G +
Sbjct: 118 TRLSS-NKYVTIGDVSRQLGSKF 139
>sp|O26146|RLSX_METTH Fused L13/S9 ribosomal protein OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=rpl13p/rps9p PE=3 SV=1
Length = 282
Score = 87.4 bits (215), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 53/141 (37%), Positives = 83/141 (58%), Gaps = 5/141 (3%)
Query: 12 VVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKY-MRFLRKRMNTK 70
++++ H+LGRLASV++K+LL G++V+V+ E+I I+G KY R R ++
Sbjct: 4 MIINGEGHILGRLASVVSKKLLEGEEVIVLNAEKILITGSKEWAYGKYKQRIDRASISNP 63
Query: 71 PSHGPIHFRAPAKILWRTIRGMIPHKTKRGAAALARLKAYEGVPAPYDKTKRMVIPDALK 130
GP + R P I RT+RGM+P+K +G A LKAY G+P + + + IPDA K
Sbjct: 64 RRMGPKYPRRPDDIFRRTVRGMLPYKKSKGREAFKGLKAYVGIPREFKDEEMVEIPDA-K 122
Query: 131 VLRLQKGHKYCLLGRLSSEVG 151
++KG + LG +S +G
Sbjct: 123 AGSIKKGME---LGEISELLG 140
>sp|Q8TVB6|RL13_METKA 50S ribosomal protein L13P OS=Methanopyrus kandleri (strain AV19 /
DSM 6324 / JCM 9639 / NBRC 100938) GN=rpl13p PE=3 SV=1
Length = 159
Score = 87.0 bits (214), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 81/144 (56%), Gaps = 7/144 (4%)
Query: 12 VVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKP 71
V+DA + +LGRLASV+AK +L G+++ V+ E+ I+G ++ +L+K P
Sbjct: 16 TVIDAENAVLGRLASVVAKRILKGERIAVINTEKAIITG---KKNTIKEEWLQKIQRGDP 72
Query: 72 SHGPIHFRAPAKILWRTIRGMIPHKTKRGAAALARLKAYEGVPAPYDKTKRMVIPDALKV 131
GP + R P I R +RGM+P KTKRG A RL+AY G P ++ + P+ +
Sbjct: 73 KKGPFYPRRPDLIFRRVVRGMLPWKTKRGREAFKRLRAYIGTPRWVEEAN--IEPERVAE 130
Query: 132 LRLQK-GH-KYCLLGRLSSEVGWN 153
+ + GH Y LG LS E+G+
Sbjct: 131 ADMSRLGHLWYVTLGELSEELGYQ 154
>sp|Q5JJF6|RL13_PYRKO 50S ribosomal protein L13P OS=Pyrococcus kodakaraensis (strain ATCC
BAA-918 / JCM 12380 / KOD1) GN=rpl13p PE=3 SV=1
Length = 142
Score = 84.3 bits (207), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 52/142 (36%), Positives = 79/142 (55%), Gaps = 2/142 (1%)
Query: 13 VVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPS 72
+++A +LGRLAS +AK LL G++VV+V E+ I+G KY + R T P
Sbjct: 3 IINAEGLILGRLASKVAKMLLEGEEVVIVNAEKAIITGNREDIFAKYKQRTELRTRTNPR 62
Query: 73 HGPIHFRAPAKILWRTIRGMIPHKTKRGAAALARLKAYEGVPAPYDKTKRMVIPDALKVL 132
GP + + +I+ RT+RGM+P KT RG A RLK Y GVP ++ + I +A +
Sbjct: 63 RGPFYPKRSDEIVRRTVRGMLPWKTDRGRKAFKRLKVYVGVPKEFEGKEFETISEA-HMS 121
Query: 133 RLQKGHKYCLLGRLSSEVGWNY 154
RL KY +G ++ +G +
Sbjct: 122 RLAT-PKYVTVGEVAKFLGGKF 142
>sp|Q8U0E6|RL13_PYRFU 50S ribosomal protein L13P OS=Pyrococcus furiosus (strain ATCC
43587 / DSM 3638 / JCM 8422 / Vc1) GN=rpl13p PE=1 SV=1
Length = 142
Score = 83.2 bits (204), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/142 (37%), Positives = 79/142 (55%), Gaps = 2/142 (1%)
Query: 13 VVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPS 72
+++A +LGRLAS +AK LL G++VV+V E+ I+G KY + R T P
Sbjct: 3 IINAEGLILGRLASKVAKMLLEGEEVVIVNAEKAVITGNRDVIFKKYKQRTELRTLTNPR 62
Query: 73 HGPIHFRAPAKILWRTIRGMIPHKTKRGAAALARLKAYEGVPAPYDKTKRMVIPDALKVL 132
GP + + +I+ RTIRGM+P KT RG A RLK Y G+P + + I +A V
Sbjct: 63 RGPFYPKRSDEIVRRTIRGMLPWKTDRGRKAFKRLKVYVGIPKEFQGKELETIIEA-HVS 121
Query: 133 RLQKGHKYCLLGRLSSEVGWNY 154
RL + KY +G ++ +G +
Sbjct: 122 RLSR-PKYVTVGEVAKFLGGKF 142
>sp|Q9V196|RL13_PYRAB 50S ribosomal protein L13P OS=Pyrococcus abyssi (strain GE5 /
Orsay) GN=rpl13p PE=3 SV=1
Length = 142
Score = 82.8 bits (203), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/142 (37%), Positives = 79/142 (55%), Gaps = 2/142 (1%)
Query: 13 VVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPS 72
+++A +LGRLAS +AK LL G++VV+V E+ I+G KY + R T P
Sbjct: 3 IINAEGLILGRLASRVAKMLLEGEEVVIVNAEKAVITGNREVIFSKYKQRTGLRTLTNPR 62
Query: 73 HGPIHFRAPAKILWRTIRGMIPHKTKRGAAALARLKAYEGVPAPYDKTKRMVIPDALKVL 132
GP + + +I+ RTIRGM+P KT RG A RLK Y G+P + + I +A V
Sbjct: 63 RGPFYPKRSDEIVRRTIRGMLPWKTDRGRKAFKRLKVYVGIPKEFKDKQLETIVEA-HVS 121
Query: 133 RLQKGHKYCLLGRLSSEVGWNY 154
RL + KY +G ++ +G +
Sbjct: 122 RLSR-PKYVTVGEVAKFLGGKF 142
>sp|O59300|RL13_PYRHO 50S ribosomal protein L13P OS=Pyrococcus horikoshii (strain ATCC
700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=rpl13p PE=1 SV=1
Length = 142
Score = 82.0 bits (201), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/142 (37%), Positives = 79/142 (55%), Gaps = 2/142 (1%)
Query: 13 VVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKPS 72
+++A +LGRLAS +AK LL G++VV+V E+ I+G KY + R T P
Sbjct: 3 IINADGLILGRLASRVAKMLLEGEEVVIVNAEKAVITGNREVIFSKYKQRTGLRTLTNPR 62
Query: 73 HGPIHFRAPAKILWRTIRGMIPHKTKRGAAALARLKAYEGVPAPYDKTKRMVIPDALKVL 132
GP + + +I+ RTIRGM+P KT RG A RLK Y G+P + + I +A V
Sbjct: 63 RGPFYPKRSDEIVRRTIRGMLPWKTDRGRKAFRRLKVYVGIPKEFQDKQLETIVEA-HVS 121
Query: 133 RLQKGHKYCLLGRLSSEVGWNY 154
RL + KY +G ++ +G +
Sbjct: 122 RLSR-PKYVTVGEVAKFLGGKF 142
>sp|P29198|RL13_HALMA 50S ribosomal protein L13P OS=Haloarcula marismortui (strain ATCC
43049 / DSM 3752 / JCM 8966 / VKM B-1809) GN=rpl13p PE=1
SV=1
Length = 145
Score = 81.6 bits (200), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 51/142 (35%), Positives = 78/142 (54%), Gaps = 9/142 (6%)
Query: 12 VVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKP 71
V+VDAR ++GR+AS +A++ L+G+ V VV E I+G + KY KR++
Sbjct: 10 VIVDARDCIMGRVASQVAEQALDGETVAVVNAERAVITGREEQIVEKY----EKRVDIGN 65
Query: 72 SHGPIHFRAPAKILWRTIRGMIPHKTKRGAAALARLKAYEGVPAPYDKTKRMVIPDALKV 131
+G + + P I RTIRGM+PHK +RG A ++ Y G PYD+ ++ D +
Sbjct: 66 DNGYFYPKRPDGIFKRTIRGMLPHKKQRGREAFESVRVYLG--NPYDEDGEVL--DGTSL 121
Query: 132 LRLQKGHKYCLLGRLSSEVGWN 153
RL K+ LG +S +G N
Sbjct: 122 DRLSN-IKFVTLGEISETLGAN 142
>sp|Q2FTN5|RL13_METHJ 50S ribosomal protein L13P OS=Methanospirillum hungatei (strain
JF-1 / DSM 864) GN=rpl13p PE=3 SV=1
Length = 140
Score = 81.3 bits (199), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 56/143 (39%), Positives = 72/143 (50%), Gaps = 5/143 (3%)
Query: 12 VVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKP 71
VV+D +LGRLAS +AK L G+++ VV E+ ISG R Y + KR
Sbjct: 3 VVIDGDGLLLGRLASNVAKRALAGEEIAVVNAEKAVISGNRARVLGNYKQ---KRQRGSR 59
Query: 72 SHGPIHFRAPAKILWRTIRGMIPHKTKRGAAALARLKAYEGVPAPYDKTKRMVIPDALKV 131
GP R P IL RTIRGMIP+K +RG A+ R++ Y GVP I DA K
Sbjct: 60 EGGPFFPRRPDHILKRTIRGMIPYKRERGIEAMKRIRIYVGVPDELSGQPFETIEDASKK 119
Query: 132 LRLQKGHKYCLLGRLSSEVGWNY 154
H LG +S+ +G Y
Sbjct: 120 RLGNPSH--VTLGAVSTFLGAKY 140
>sp|Q3IQT4|RL13_NATPD 50S ribosomal protein L13P OS=Natronomonas pharaonis (strain DSM
2160 / ATCC 35678) GN=rpl13p PE=3 SV=1
Length = 144
Score = 81.3 bits (199), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 50/142 (35%), Positives = 79/142 (55%), Gaps = 10/142 (7%)
Query: 12 VVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKP 71
VV+DAR +LGR+AS +A+ L+G+++ VV E+ I+G + M RKR
Sbjct: 10 VVIDARDCILGRVASQVAERALDGERIAVVNAEQAVITG----SEDDIMEVYRKRDEVGS 65
Query: 72 SHGPIHFRAPAKILWRTIRGMIPHKTKRGAAALARLKAYEGVPAPYDKTKRMVIPDALKV 131
GP + + P +I R++RGM+P+KT RG A ++ Y G PY++ + V+ D +
Sbjct: 66 DRGPRYPKRPDRIFKRSVRGMLPYKTTRGREAFENVRIYMG--NPYEEAE--VLEDT-SL 120
Query: 132 LRLQKGHKYCLLGRLSSEVGWN 153
RL K+ LG +S +G N
Sbjct: 121 DRLSN-IKFVSLGEVSENLGAN 141
>sp|Q18G58|RL13_HALWD 50S ribosomal protein L13P OS=Haloquadratum walsbyi (strain DSM
16790) GN=rpl13p PE=3 SV=1
Length = 145
Score = 75.5 bits (184), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 72/140 (51%), Gaps = 9/140 (6%)
Query: 12 VVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKP 71
VV++A++ ++GR+AS +A+ L G+ V +V E+ I+G + M R
Sbjct: 10 VVINAQNCIVGRVASEVAQRALGGETVAIVNVEDAVITG----SEEDVMSVYETRSELGS 65
Query: 72 SHGPIHFRAPAKILWRTIRGMIPHKTKRGAAALARLKAYEGVPAPYDKTKRMVIPDALKV 131
GP + P I R +RGM+P+K+ RG AL+ ++ Y G PYD + D +
Sbjct: 66 DQGPAYPSRPDGIFKRAVRGMLPYKSDRGREALSNVRTYVG--NPYDDDGEAI--DGTTL 121
Query: 132 LRLQKGHKYCLLGRLSSEVG 151
RL K+ LG +S+ +G
Sbjct: 122 DRLSN-IKFLSLGEVSANLG 140
>sp|Q9HQJ3|RL13_HALSA 50S ribosomal protein L13P OS=Halobacterium salinarum (strain ATCC
700922 / JCM 11081 / NRC-1) GN=rpl13p PE=3 SV=1
Length = 145
Score = 75.1 bits (183), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 69/142 (48%), Gaps = 9/142 (6%)
Query: 12 VVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKP 71
VVVDAR ++GR+AS +A+ L G +V VV E+ I+G + R R N
Sbjct: 10 VVVDARDCIMGRVASNVAERALAGDRVAVVNAEQAVITG----TEDDVFSTYRTRANLGS 65
Query: 72 SHGPIHFRAPAKILWRTIRGMIPHKTKRGAAALARLKAYEGVPAPYDKTKRMVIPDALKV 131
GP + + P I R IRGM+P+K G AL ++ Y G P D + D +
Sbjct: 66 DRGPYYPKRPDGIFKRAIRGMLPYKQDDGREALDSVRVYVGNPMDEDGD----VLDGTSL 121
Query: 132 LRLQKGHKYCLLGRLSSEVGWN 153
RL ++ L +S E+G N
Sbjct: 122 DRLST-IRFVTLSEVSEELGAN 142
>sp|Q96YW2|RL13_SULTO 50S ribosomal protein L13P OS=Sulfolobus tokodaii (strain DSM 16993
/ JCM 10545 / NBRC 100140 / 7) GN=rpl13p PE=3 SV=1
Length = 146
Score = 74.7 bits (182), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 54/141 (38%), Positives = 75/141 (53%), Gaps = 5/141 (3%)
Query: 12 VVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKP 71
VVV+A + +LGR+A+ +AK L+ G++VVVV E+ ISG R Y R P
Sbjct: 6 VVVNAENQILGRMATHIAKLLIQGKRVVVVNAEKAIISGPRARVVRGYSLIFSVRKFQNP 65
Query: 72 SHGPI-HFRAPAKILWRTIRGMIPHKTKRGAAALARLKAYEGVPAPYDKTKRMVIPDALK 130
I R P I+ RT+RGM+P K K G L + G+PA Y K K+M+ +
Sbjct: 66 EKNTIKRPRTPINIVKRTVRGMLP-KNKSGKMMFKNLIVFIGIPAEY-KDKQMIRFEDAD 123
Query: 131 VLRLQKGHKYCLLGRLSSEVG 151
V RL+ KY +G LS +G
Sbjct: 124 VKRLK--GKYITVGELSKLLG 142
>sp|P95991|RL13_SULSO 50S ribosomal protein L13P OS=Sulfolobus solfataricus (strain ATCC
35092 / DSM 1617 / JCM 11322 / P2) GN=rpl13p PE=3 SV=1
Length = 149
Score = 72.4 bits (176), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 50/143 (34%), Positives = 78/143 (54%), Gaps = 5/143 (3%)
Query: 12 VVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNTKP 71
V+++A +LGR+AS + + L G+KV++V E+ ISG R Y L + P
Sbjct: 10 VIINAEGQILGRMASNVVRLLKEGKKVIIVNGEKAVISGEKNRVIESYKLLLTVKTLFNP 69
Query: 72 SHGPIHF-RAPAKILWRTIRGMIPHKTKRGAAALARLKAYEGVPAPYDKTKRMVIPDALK 130
I R+P I+ RTIRGM+P K+ +G L +K Y GVP ++ + + PD+
Sbjct: 70 YRNGIRRPRSPINIVKRTIRGMLP-KSSKGRRMLKNVKIYVGVPKEFEGRQFIKFPDS-D 127
Query: 131 VLRLQKGHKYCLLGRLSSEVGWN 153
V RL+ KY + +S E+GW+
Sbjct: 128 VSRLK--GKYVTVEVVSKELGWS 148
>sp|Q2NFZ8|RL13_METST 50S ribosomal protein L13P OS=Methanosphaera stadtmanae (strain DSM
3091) GN=rpl13p PE=3 SV=1
Length = 142
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/104 (37%), Positives = 58/104 (55%), Gaps = 1/104 (0%)
Query: 12 VVVDARHHMLGRLASVLAKELLNGQKVVVVRCEEICISGGLVRQKMKY-MRFLRKRMNTK 70
++D +LGRLAS ++K LL+G+++ ++ E+I ISG KY R R ++
Sbjct: 3 TIIDGEGLVLGRLASTVSKRLLDGEEITIINAEKIIISGNKDFIYAKYKQRVDRASISNP 62
Query: 71 PSHGPIHFRAPAKILWRTIRGMIPHKTKRGAAALARLKAYEGVP 114
GP + R P I RT+RGMIP++ G AA LK G+P
Sbjct: 63 RDLGPKYPRRPDDIFRRTVRGMIPYRKAHGRAAYKNLKVNVGIP 106
>sp|Q8ZYQ1|RL13_PYRAE 50S ribosomal protein L13P OS=Pyrobaculum aerophilum (strain ATCC
51768 / IM2 / DSM 7523 / JCM 9630 / NBRC 100827)
GN=rpl13p PE=3 SV=1
Length = 187
Score = 71.2 bits (173), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 54/145 (37%), Positives = 80/145 (55%), Gaps = 15/145 (10%)
Query: 9 AKRVVVDARHHMLGRLASVLAKELLN--GQKVVVVRCEEICISGGLVRQKMKYMRFLRK- 65
A V+VDA H+ GRLA+ +AK LL ++VVV E++ I+G +KM F RK
Sbjct: 16 AGEVIVDAEGHVAGRLATYIAKALLERPNLRIVVVNAEKLVITGD---EKMVIEWFKRKI 72
Query: 66 ---RMNTKPSH-GPIHFRAPAKILWRTIRGMIPHKTKRGAAALARLKAYEGVPAPYDKTK 121
R + P GP R P ++ R +RGM+P K++ G +AL RL+ Y +P + K
Sbjct: 73 SEWRTHYNPEKAGPKVPRRPDRVFKRIVRGMLPKKSETGRSALKRLRVYMSIPIEIMQRK 132
Query: 122 RMV---IPDALKVLRLQKGHKYCLL 143
R+V +P+A LRL+ +Y L
Sbjct: 133 RLVLYEVPEAK--LRLRPLLQYTTL 155
>sp|B1YC32|RL13_PYRNV 50S ribosomal protein L13P OS=Pyrobaculum neutrophilum (strain DSM
2338 / JCM 9278 / V24Sta) GN=rpl13p PE=3 SV=1
Length = 182
Score = 70.9 bits (172), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 52/166 (31%), Positives = 89/166 (53%), Gaps = 16/166 (9%)
Query: 12 VVVDARHHMLGRLASVLAKELLN--GQKVVVVRCEEICISGGLVRQKMKYMRFLRKRMNT 69
VV++A H+ GRLA+ +AK LL G ++VVV E++ ++G +KM + + +++++
Sbjct: 17 VVINAEGHIAGRLATYIAKALLEKPGLRIVVVNAEKLVVTGD---EKM-VVEWFKRKISE 72
Query: 70 KPSH------GPIHFRAPAKILWRTIRGMIPHKTKRGAAALARLKAYEGVPAPYDKTKRM 123
+H GP R P ++ R +RGM+P + + G AL RL+ Y VP KR+
Sbjct: 73 WGTHYNPEKAGPKIPRRPDRVFKRMVRGMLPKRAESGRRALKRLRVYVSVPMELLSRKRL 132
Query: 124 VIPDALKV-LRLQKGHKYCLLGRLSSEV---GWNYYDTIKELEKKR 165
V+ + LR++ KY L + +V W + +EL +KR
Sbjct: 133 VVYEVPPAKLRMRPLAKYVTLEEVWRQVDPAAWEQWKKAQELWQKR 178
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.137 0.402
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,960,882
Number of Sequences: 539616
Number of extensions: 2771583
Number of successful extensions: 11613
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 581
Number of HSP's that attempted gapping in prelim test: 11227
Number of HSP's gapped (non-prelim): 700
length of query: 206
length of database: 191,569,459
effective HSP length: 112
effective length of query: 94
effective length of database: 131,132,467
effective search space: 12326451898
effective search space used: 12326451898
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 58 (26.9 bits)